Query 041816
Match_columns 396
No_of_seqs 670 out of 2330
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 10:56:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.1E-53 6.8E-58 412.1 39.4 310 80-396 446-757 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.2E-52 2.6E-57 408.0 39.5 311 79-396 480-792 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.9E-47 4.1E-52 368.5 33.3 301 82-396 98-429 (697)
4 PLN03081 pentatricopeptide (PP 100.0 6.1E-47 1.3E-51 365.0 31.6 298 80-396 167-465 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.7E-45 3.6E-50 363.1 30.9 303 79-396 230-628 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.1E-44 2.4E-49 357.2 31.8 303 79-396 261-660 (857)
7 PRK11788 tetratricopeptide rep 99.9 3.4E-24 7.3E-29 194.4 33.7 301 80-394 44-354 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1E-20 2.2E-25 190.1 35.6 291 79-385 575-898 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 3.5E-20 7.5E-25 186.3 37.1 292 78-386 540-831 (899)
10 PRK11788 tetratricopeptide rep 99.9 2E-20 4.3E-25 169.8 31.7 269 113-394 41-316 (389)
11 PRK15174 Vi polysaccharide exp 99.9 2.1E-18 4.6E-23 164.5 37.2 295 77-387 82-381 (656)
12 PRK15174 Vi polysaccharide exp 99.9 1.2E-17 2.6E-22 159.3 36.2 293 81-388 52-348 (656)
13 TIGR00990 3a0801s09 mitochondr 99.8 3.6E-17 7.8E-22 156.4 35.9 302 73-388 129-497 (615)
14 TIGR00990 3a0801s09 mitochondr 99.8 3.8E-16 8.2E-21 149.4 37.0 296 79-387 168-571 (615)
15 KOG4626 O-linked N-acetylgluco 99.8 3.9E-17 8.4E-22 144.1 23.3 291 83-393 196-489 (966)
16 KOG4626 O-linked N-acetylgluco 99.8 5.2E-17 1.1E-21 143.3 22.4 291 77-385 122-415 (966)
17 PRK11447 cellulose synthase su 99.8 2.5E-15 5.5E-20 153.0 37.7 306 80-392 360-746 (1157)
18 PRK11447 cellulose synthase su 99.8 1.5E-15 3.3E-20 154.6 35.5 194 78-282 276-524 (1157)
19 PRK10747 putative protoheme IX 99.8 2.8E-14 6.2E-19 128.6 35.3 285 83-386 96-389 (398)
20 COG2956 Predicted N-acetylgluc 99.7 2.2E-14 4.7E-19 117.4 28.7 294 79-389 43-349 (389)
21 TIGR00540 hemY_coli hemY prote 99.7 5.8E-14 1.3E-18 127.3 34.9 296 81-386 94-398 (409)
22 PF13429 TPR_15: Tetratricopep 99.7 4E-17 8.6E-22 140.8 13.6 259 79-350 16-275 (280)
23 PF13429 TPR_15: Tetratricopep 99.7 2.8E-17 6.1E-22 141.7 12.2 263 112-386 13-276 (280)
24 PRK10049 pgaA outer membrane p 99.7 2.4E-13 5.2E-18 132.8 37.1 294 81-386 59-421 (765)
25 PRK10049 pgaA outer membrane p 99.7 3E-13 6.6E-18 132.0 35.9 299 79-387 91-456 (765)
26 PRK09782 bacteriophage N4 rece 99.7 2.9E-13 6.3E-18 132.9 34.7 285 86-388 453-741 (987)
27 PRK09782 bacteriophage N4 rece 99.7 8.1E-13 1.8E-17 129.8 36.7 292 81-388 386-707 (987)
28 KOG4422 Uncharacterized conser 99.7 2.3E-13 5E-18 115.5 28.3 279 104-388 204-552 (625)
29 COG3071 HemY Uncharacterized e 99.7 2.4E-12 5.2E-17 108.7 33.6 295 82-393 95-396 (400)
30 KOG1126 DNA-binding cell divis 99.7 7.2E-14 1.6E-18 124.9 25.7 291 84-392 332-625 (638)
31 PRK14574 hmsH outer membrane p 99.6 1.8E-12 4E-17 124.8 34.4 292 83-387 46-396 (822)
32 PRK14574 hmsH outer membrane p 99.6 8.4E-12 1.8E-16 120.3 36.0 138 83-226 80-217 (822)
33 PRK10747 putative protoheme IX 99.6 4.7E-12 1E-16 114.3 30.6 254 82-351 129-389 (398)
34 KOG2076 RNA polymerase III tra 99.6 1.4E-11 3E-16 114.0 32.5 294 82-385 150-510 (895)
35 KOG4422 Uncharacterized conser 99.6 6.1E-12 1.3E-16 107.1 27.8 298 81-389 125-464 (625)
36 TIGR00540 hemY_coli hemY prote 99.6 6.8E-12 1.5E-16 113.9 29.7 260 81-351 128-398 (409)
37 PRK12370 invasion protein regu 99.6 7.4E-12 1.6E-16 118.0 30.2 266 105-388 254-536 (553)
38 KOG1155 Anaphase-promoting com 99.6 7.9E-12 1.7E-16 107.4 25.3 164 213-386 331-494 (559)
39 PRK12370 invasion protein regu 99.6 6.7E-12 1.4E-16 118.3 27.7 250 86-352 276-535 (553)
40 KOG1126 DNA-binding cell divis 99.5 1E-12 2.2E-17 117.7 20.0 260 76-352 358-620 (638)
41 COG2956 Predicted N-acetylgluc 99.5 4.7E-11 1E-15 98.2 27.6 259 120-386 48-310 (389)
42 KOG2003 TPR repeat-containing 99.5 1.1E-11 2.3E-16 106.4 25.0 280 80-373 428-709 (840)
43 KOG2003 TPR repeat-containing 99.5 4.6E-11 1E-15 102.6 28.7 155 222-387 534-689 (840)
44 TIGR02521 type_IV_pilW type IV 99.5 1.8E-11 3.9E-16 102.6 26.5 200 177-386 31-231 (234)
45 KOG1155 Anaphase-promoting com 99.5 4E-11 8.6E-16 103.2 27.7 195 179-383 332-532 (559)
46 KOG0547 Translocase of outer m 99.5 5.6E-11 1.2E-15 103.0 28.5 305 73-385 117-564 (606)
47 TIGR02521 type_IV_pilW type IV 99.5 2.2E-11 4.8E-16 102.1 26.1 200 107-350 31-230 (234)
48 KOG4318 Bicoid mRNA stability 99.5 7.4E-12 1.6E-16 115.4 20.1 258 96-396 15-274 (1088)
49 KOG2002 TPR-containing nuclear 99.4 1.3E-10 2.8E-15 108.6 25.9 294 85-388 427-746 (1018)
50 KOG1129 TPR repeat-containing 99.4 3.8E-11 8.3E-16 98.9 19.9 230 146-387 227-458 (478)
51 COG3071 HemY Uncharacterized e 99.4 1E-09 2.3E-14 93.0 28.5 275 112-396 87-364 (400)
52 PF12569 NARP1: NMDA receptor- 99.4 1E-09 2.2E-14 100.4 29.5 294 82-386 15-333 (517)
53 KOG1173 Anaphase-promoting com 99.4 7E-10 1.5E-14 98.0 26.0 274 106-393 243-522 (611)
54 KOG2076 RNA polymerase III tra 99.4 2.8E-09 6.1E-14 99.2 31.1 263 116-387 148-478 (895)
55 KOG1840 Kinesin light chain [C 99.4 4E-10 8.8E-15 101.9 24.5 244 142-385 199-477 (508)
56 PF13041 PPR_2: PPR repeat fam 99.4 1.8E-12 3.9E-17 79.3 6.5 50 321-370 1-50 (50)
57 KOG1129 TPR repeat-containing 99.4 1.6E-10 3.4E-15 95.3 18.8 230 111-352 227-458 (478)
58 PRK11189 lipoprotein NlpI; Pro 99.3 3.7E-09 8.1E-14 91.5 27.5 217 86-317 41-265 (296)
59 KOG2002 TPR-containing nuclear 99.3 5.2E-09 1.1E-13 98.2 29.7 290 85-386 250-558 (1018)
60 KOG0495 HAT repeat protein [RN 99.3 2E-08 4.4E-13 90.5 31.5 297 83-387 528-880 (913)
61 KOG1840 Kinesin light chain [C 99.3 8.5E-10 1.8E-14 99.9 23.4 245 107-351 199-478 (508)
62 PRK11189 lipoprotein NlpI; Pro 99.3 4.2E-09 9.2E-14 91.2 27.0 225 121-361 40-273 (296)
63 KOG1173 Anaphase-promoting com 99.3 4E-09 8.7E-14 93.3 26.4 273 83-370 256-534 (611)
64 KOG0547 Translocase of outer m 99.3 4.3E-09 9.3E-14 91.5 24.6 229 81-316 336-565 (606)
65 COG3063 PilF Tfp pilus assembl 99.3 1.9E-08 4E-13 79.4 24.2 188 113-310 41-229 (250)
66 cd05804 StaR_like StaR_like; a 99.2 1.3E-07 2.9E-12 84.7 33.1 294 85-387 20-336 (355)
67 KOG1915 Cell cycle control pro 99.2 1.3E-07 2.8E-12 82.3 30.6 287 85-387 155-536 (677)
68 KOG0495 HAT repeat protein [RN 99.2 8.7E-08 1.9E-12 86.5 30.3 287 84-384 492-779 (913)
69 COG3063 PilF Tfp pilus assembl 99.2 3.2E-08 6.8E-13 78.2 23.7 195 76-281 40-235 (250)
70 KOG1174 Anaphase-promoting com 99.2 5.9E-08 1.3E-12 82.9 25.9 288 85-388 210-501 (564)
71 PF12569 NARP1: NMDA receptor- 99.2 1.3E-07 2.8E-12 86.9 29.2 262 113-390 10-294 (517)
72 cd05804 StaR_like StaR_like; a 99.1 3.4E-07 7.4E-12 82.1 30.3 274 105-387 4-293 (355)
73 KOG1915 Cell cycle control pro 99.1 1E-06 2.2E-11 76.9 30.8 133 250-386 319-465 (677)
74 PF04733 Coatomer_E: Coatomer 99.1 1.2E-08 2.6E-13 87.2 17.4 249 81-352 11-265 (290)
75 KOG1174 Anaphase-promoting com 99.1 7.3E-07 1.6E-11 76.5 27.4 262 76-352 237-500 (564)
76 KOG0624 dsRNA-activated protei 99.1 5.5E-07 1.2E-11 75.4 25.9 297 76-388 43-371 (504)
77 KOG1156 N-terminal acetyltrans 99.0 2.5E-06 5.5E-11 77.3 30.3 162 77-242 47-249 (700)
78 PLN02789 farnesyltranstransfer 99.0 1E-06 2.2E-11 76.4 26.6 207 117-335 47-267 (320)
79 PLN02789 farnesyltranstransfer 99.0 5.3E-07 1.1E-11 78.2 24.8 204 84-300 50-267 (320)
80 PF04733 Coatomer_E: Coatomer 99.0 1.3E-08 2.7E-13 87.1 14.6 249 117-387 11-265 (290)
81 KOG1125 TPR repeat-containing 99.0 1.6E-07 3.5E-12 83.7 21.6 252 116-380 294-564 (579)
82 KOG1125 TPR repeat-containing 99.0 1.2E-07 2.7E-12 84.4 20.0 251 81-344 295-563 (579)
83 KOG0548 Molecular co-chaperone 99.0 5.5E-07 1.2E-11 79.7 23.7 302 78-388 9-456 (539)
84 KOG1070 rRNA processing protei 99.0 2.6E-07 5.7E-12 90.1 22.3 204 143-356 1459-1667(1710)
85 KOG1070 rRNA processing protei 98.9 2.4E-06 5.1E-11 83.7 26.6 241 92-345 1445-1693(1710)
86 PRK04841 transcriptional regul 98.9 7.3E-06 1.6E-10 83.1 31.8 305 82-388 420-761 (903)
87 KOG4340 Uncharacterized conser 98.9 7.2E-07 1.6E-11 73.3 18.8 83 84-170 23-106 (459)
88 PF12854 PPR_1: PPR repeat 98.9 4E-09 8.6E-14 57.9 4.1 32 353-384 2-33 (34)
89 KOG4318 Bicoid mRNA stability 98.9 3.3E-07 7.1E-12 85.6 18.5 230 81-338 35-286 (1088)
90 KOG3785 Uncharacterized conser 98.8 2.2E-06 4.8E-11 72.1 21.4 52 80-133 66-117 (557)
91 TIGR03302 OM_YfiO outer membra 98.8 1.1E-06 2.4E-11 73.7 20.1 186 175-387 31-232 (235)
92 KOG1128 Uncharacterized conser 98.8 7.7E-07 1.7E-11 81.6 19.9 216 109-351 400-615 (777)
93 KOG4162 Predicted calmodulin-b 98.8 4.3E-05 9.3E-10 71.0 30.8 306 77-387 363-783 (799)
94 KOG1128 Uncharacterized conser 98.8 2.3E-06 4.9E-11 78.7 22.2 214 146-387 402-616 (777)
95 TIGR03302 OM_YfiO outer membra 98.8 1.2E-06 2.7E-11 73.5 19.6 185 105-316 31-231 (235)
96 PF12854 PPR_1: PPR repeat 98.8 7.4E-09 1.6E-13 56.8 3.9 32 318-349 2-33 (34)
97 PRK10370 formate-dependent nit 98.8 2.6E-06 5.7E-11 68.8 19.7 119 225-352 52-173 (198)
98 COG5010 TadD Flp pilus assembl 98.8 2.6E-06 5.6E-11 69.0 18.9 164 106-280 66-229 (257)
99 PRK15179 Vi polysaccharide bio 98.8 3.1E-06 6.7E-11 81.0 22.7 134 105-242 84-218 (694)
100 KOG4162 Predicted calmodulin-b 98.8 1.4E-05 3E-10 74.1 25.3 255 87-352 460-783 (799)
101 KOG2047 mRNA splicing factor [ 98.7 2.9E-05 6.2E-10 70.6 26.5 207 178-389 249-508 (835)
102 PRK10370 formate-dependent nit 98.7 4E-06 8.8E-11 67.8 19.6 119 155-282 52-173 (198)
103 KOG2376 Signal recognition par 98.7 3.1E-05 6.7E-10 69.7 26.4 300 83-394 24-420 (652)
104 COG5010 TadD Flp pilus assembl 98.7 3.1E-06 6.7E-11 68.5 18.4 164 176-350 66-229 (257)
105 PRK15179 Vi polysaccharide bio 98.7 1.7E-05 3.6E-10 76.0 26.0 162 173-350 82-243 (694)
106 KOG3785 Uncharacterized conser 98.7 2.1E-05 4.7E-10 66.4 23.3 287 86-391 166-494 (557)
107 KOG1156 N-terminal acetyltrans 98.7 2.7E-05 5.9E-10 70.8 25.4 292 85-391 21-321 (700)
108 PRK14720 transcript cleavage f 98.7 9.1E-06 2E-10 78.7 24.0 225 100-369 24-268 (906)
109 KOG2047 mRNA splicing factor [ 98.7 0.0001 2.2E-09 67.3 28.5 206 178-385 388-613 (835)
110 PRK04841 transcriptional regul 98.7 4.3E-05 9.4E-10 77.5 30.0 276 111-386 413-719 (903)
111 KOG3081 Vesicle coat complex C 98.7 3.6E-05 7.9E-10 62.5 22.2 140 183-339 114-257 (299)
112 KOG3081 Vesicle coat complex C 98.6 4.1E-05 8.9E-10 62.3 22.2 243 120-385 21-269 (299)
113 PRK15359 type III secretion sy 98.6 5E-06 1.1E-10 63.6 16.4 119 92-218 14-132 (144)
114 PRK15359 type III secretion sy 98.6 6E-06 1.3E-10 63.1 16.0 91 148-240 30-120 (144)
115 COG4783 Putative Zn-dependent 98.6 4.1E-05 8.8E-10 67.6 22.6 231 87-352 219-454 (484)
116 COG4783 Putative Zn-dependent 98.6 4.1E-05 8.9E-10 67.6 22.6 214 122-351 218-436 (484)
117 KOG2376 Signal recognition par 98.6 0.00019 4.2E-09 64.8 26.9 117 269-387 357-487 (652)
118 KOG4340 Uncharacterized conser 98.6 1.4E-05 3.1E-10 65.8 17.6 261 110-388 13-306 (459)
119 KOG2053 Mitochondrial inherita 98.5 0.00051 1.1E-08 65.2 29.3 224 82-318 20-256 (932)
120 KOG0624 dsRNA-activated protei 98.5 0.00031 6.7E-09 59.4 25.1 297 81-394 82-427 (504)
121 KOG3060 Uncharacterized conser 98.5 0.00019 4E-09 58.1 22.4 186 122-317 27-220 (289)
122 PRK14720 transcript cleavage f 98.5 5.5E-05 1.2E-09 73.5 23.2 222 81-334 41-268 (906)
123 TIGR02552 LcrH_SycD type III s 98.5 1.4E-05 3.1E-10 60.6 14.6 110 93-206 5-114 (135)
124 KOG3617 WD40 and TPR repeat-co 98.4 0.00011 2.4E-09 68.9 22.3 249 85-384 814-1106(1416)
125 TIGR02552 LcrH_SycD type III s 98.4 1.6E-05 3.5E-10 60.2 14.7 92 182-281 22-113 (135)
126 TIGR00756 PPR pentatricopeptid 98.4 4.8E-07 1E-11 50.4 4.6 34 360-393 2-35 (35)
127 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 5.7E-05 1.2E-09 67.1 18.6 125 255-385 171-295 (395)
128 KOG3617 WD40 and TPR repeat-co 98.4 0.00011 2.5E-09 68.8 20.6 249 81-373 738-1008(1416)
129 KOG1914 mRNA cleavage and poly 98.4 0.0016 3.5E-08 58.5 29.0 131 254-386 367-500 (656)
130 KOG0985 Vesicle coat protein c 98.4 0.0009 2E-08 64.5 26.5 84 253-344 1104-1187(1666)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.3E-05 5E-10 69.5 15.2 121 148-280 175-295 (395)
132 PF13812 PPR_3: Pentatricopept 98.3 1E-06 2.3E-11 48.6 4.5 33 359-391 2-34 (34)
133 KOG3060 Uncharacterized conser 98.3 0.00052 1.1E-08 55.6 21.1 189 84-283 25-221 (289)
134 KOG0985 Vesicle coat protein c 98.3 0.00027 5.9E-09 67.8 21.4 130 82-234 1059-1188(1666)
135 PF09976 TPR_21: Tetratricopep 98.3 8.2E-05 1.8E-09 57.1 15.2 127 254-384 13-144 (145)
136 PF09976 TPR_21: Tetratricopep 98.3 0.00011 2.4E-09 56.3 15.4 127 213-349 13-144 (145)
137 TIGR00756 PPR pentatricopeptid 98.2 2.5E-06 5.5E-11 47.4 4.5 31 291-321 3-33 (35)
138 KOG0548 Molecular co-chaperone 98.2 0.00097 2.1E-08 59.8 22.4 90 219-316 365-454 (539)
139 KOG1127 TPR repeat-containing 98.2 0.0012 2.5E-08 63.6 23.7 88 77-169 568-657 (1238)
140 PF13812 PPR_3: Pentatricopept 98.2 2.9E-06 6.4E-11 46.8 4.2 32 325-356 3-34 (34)
141 KOG1127 TPR repeat-containing 98.2 0.00056 1.2E-08 65.7 20.8 217 157-384 473-697 (1238)
142 KOG2053 Mitochondrial inherita 98.2 0.0032 6.9E-08 60.0 25.2 223 118-353 20-256 (932)
143 PF10037 MRP-S27: Mitochondria 98.1 9.3E-05 2E-09 66.1 14.4 122 250-371 63-186 (429)
144 KOG3616 Selective LIM binding 98.1 0.00066 1.4E-08 63.2 19.5 192 115-346 740-931 (1636)
145 KOG3616 Selective LIM binding 98.1 0.00038 8.2E-09 64.7 17.5 110 184-312 739-848 (1636)
146 PRK02603 photosystem I assembl 98.1 0.00038 8.2E-09 55.1 15.2 88 105-193 33-122 (172)
147 PF01535 PPR: PPR repeat; Int 98.1 6.8E-06 1.5E-10 44.1 3.6 30 360-389 2-31 (31)
148 PF10037 MRP-S27: Mitochondria 98.0 0.00012 2.5E-09 65.5 13.1 124 172-301 61-186 (429)
149 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00028 6E-09 51.9 13.4 96 111-206 6-105 (119)
150 cd00189 TPR Tetratricopeptide 98.0 0.00013 2.8E-09 50.9 11.1 21 218-238 40-60 (100)
151 PF08579 RPM2: Mitochondrial r 98.0 0.00012 2.6E-09 51.4 9.8 77 112-188 30-115 (120)
152 PF12895 Apc3: Anaphase-promot 98.0 1E-05 2.2E-10 55.5 4.6 81 85-167 3-83 (84)
153 PF05843 Suf: Suppressor of fo 98.0 0.0002 4.4E-09 61.5 13.4 131 254-387 2-136 (280)
154 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00045 9.8E-09 50.8 13.5 91 81-171 12-105 (119)
155 cd00189 TPR Tetratricopeptide 98.0 0.00016 3.5E-09 50.3 10.7 92 216-315 4-95 (100)
156 CHL00033 ycf3 photosystem I as 98.0 0.00033 7.1E-09 55.3 13.3 115 87-202 15-138 (168)
157 PF08579 RPM2: Mitochondrial r 98.0 0.00018 3.8E-09 50.6 9.9 68 301-368 38-114 (120)
158 PF05843 Suf: Suppressor of fo 97.9 0.00037 8E-09 59.9 14.2 129 144-281 3-135 (280)
159 KOG1914 mRNA cleavage and poly 97.9 0.0077 1.7E-07 54.4 22.0 150 158-315 347-499 (656)
160 PRK10866 outer membrane biogen 97.9 0.0047 1E-07 51.8 20.0 184 176-386 31-240 (243)
161 PF01535 PPR: PPR repeat; Int 97.9 1.6E-05 3.4E-10 42.7 3.6 29 255-283 2-30 (31)
162 KOG0553 TPR repeat-containing 97.9 0.00043 9.4E-09 57.6 12.9 110 70-184 80-189 (304)
163 PRK02603 photosystem I assembl 97.9 0.00091 2E-08 53.0 14.6 62 180-241 38-101 (172)
164 PF12895 Apc3: Anaphase-promot 97.9 5.4E-05 1.2E-09 51.9 6.3 47 191-237 3-50 (84)
165 PRK15363 pathogenicity island 97.9 0.00053 1.2E-08 52.0 11.8 98 107-206 35-132 (157)
166 PF06239 ECSIT: Evolutionarily 97.8 0.00058 1.3E-08 54.3 12.1 70 303-372 67-152 (228)
167 PRK10866 outer membrane biogen 97.8 0.011 2.3E-07 49.6 20.5 175 150-350 40-239 (243)
168 CHL00033 ycf3 photosystem I as 97.8 0.0011 2.5E-08 52.2 14.1 95 177-278 35-138 (168)
169 PLN03088 SGT1, suppressor of 97.8 0.00091 2E-08 59.6 14.9 93 148-242 8-100 (356)
170 PRK15363 pathogenicity island 97.8 0.00092 2E-08 50.7 12.5 89 219-315 42-130 (157)
171 KOG0553 TPR repeat-containing 97.8 0.0038 8.3E-08 52.1 17.0 85 154-240 93-177 (304)
172 PLN03088 SGT1, suppressor of 97.8 0.00075 1.6E-08 60.1 14.0 91 219-317 9-99 (356)
173 PF14938 SNAP: Soluble NSF att 97.8 0.00075 1.6E-08 58.2 13.4 131 255-385 116-264 (282)
174 KOG0550 Molecular chaperone (D 97.7 0.0097 2.1E-07 52.0 19.0 264 74-352 52-350 (486)
175 PF14938 SNAP: Soluble NSF att 97.7 0.0031 6.6E-08 54.4 16.5 194 86-298 30-245 (282)
176 PRK10153 DNA-binding transcrip 97.7 0.0021 4.7E-08 59.9 16.4 143 249-396 333-489 (517)
177 PRK10153 DNA-binding transcrip 97.7 0.0031 6.8E-08 58.8 17.0 144 207-361 332-489 (517)
178 PF14559 TPR_19: Tetratricopep 97.7 9.9E-05 2.2E-09 48.2 4.9 61 83-147 3-63 (68)
179 KOG2796 Uncharacterized conser 97.7 0.0064 1.4E-07 49.8 15.7 147 87-242 165-316 (366)
180 PF06239 ECSIT: Evolutionarily 97.6 0.0021 4.6E-08 51.2 12.7 72 121-192 66-153 (228)
181 PF12688 TPR_5: Tetratrico pep 97.6 0.0049 1.1E-07 45.0 13.5 56 186-241 10-67 (120)
182 COG4700 Uncharacterized protei 97.6 0.023 4.9E-07 44.2 18.5 125 250-378 86-213 (251)
183 KOG0550 Molecular chaperone (D 97.6 0.012 2.6E-07 51.5 16.8 257 117-388 59-351 (486)
184 KOG2796 Uncharacterized conser 97.5 0.035 7.6E-07 45.6 18.9 130 146-282 181-315 (366)
185 COG4235 Cytochrome c biogenesi 97.5 0.0084 1.8E-07 50.4 15.2 117 87-207 138-257 (287)
186 COG4700 Uncharacterized protei 97.5 0.027 5.9E-07 43.8 18.3 135 209-351 86-221 (251)
187 PF13525 YfiO: Outer membrane 97.5 0.028 6E-07 45.8 17.7 22 295-316 148-169 (203)
188 COG4235 Cytochrome c biogenesi 97.4 0.013 2.8E-07 49.3 15.4 99 176-282 155-256 (287)
189 PF14559 TPR_19: Tetratricopep 97.4 0.00069 1.5E-08 44.1 6.5 51 155-206 4-54 (68)
190 PF04840 Vps16_C: Vps16, C-ter 97.4 0.071 1.5E-06 46.6 24.0 107 254-380 178-284 (319)
191 KOG2041 WD40 repeat protein [G 97.4 0.012 2.7E-07 54.8 16.1 250 87-386 679-951 (1189)
192 PF12688 TPR_5: Tetratrico pep 97.4 0.018 3.9E-07 42.1 14.1 106 258-369 6-117 (120)
193 PF13525 YfiO: Outer membrane 97.4 0.042 9.1E-07 44.8 17.9 170 183-378 11-198 (203)
194 KOG1130 Predicted G-alpha GTPa 97.4 0.0016 3.6E-08 56.5 9.8 133 254-386 196-343 (639)
195 KOG1130 Predicted G-alpha GTPa 97.4 0.0019 4.1E-08 56.2 10.0 271 78-351 24-343 (639)
196 COG3898 Uncharacterized membra 97.4 0.082 1.8E-06 46.1 30.8 290 78-391 89-396 (531)
197 PF13414 TPR_11: TPR repeat; P 97.4 0.00096 2.1E-08 43.6 6.5 63 212-281 3-66 (69)
198 KOG1538 Uncharacterized conser 97.3 0.022 4.7E-07 52.8 16.6 180 111-316 602-801 (1081)
199 PF13432 TPR_16: Tetratricopep 97.3 0.0013 2.9E-08 42.3 6.9 26 178-203 32-57 (65)
200 PF13432 TPR_16: Tetratricopep 97.3 0.0016 3.5E-08 41.9 7.2 56 330-386 4-59 (65)
201 PF13414 TPR_11: TPR repeat; P 97.3 0.0018 3.9E-08 42.3 7.5 63 177-240 3-66 (69)
202 PF03704 BTAD: Bacterial trans 97.2 0.034 7.3E-07 42.6 14.9 71 290-361 64-139 (146)
203 PRK10803 tol-pal system protei 97.1 0.014 2.9E-07 49.5 12.5 99 254-352 144-246 (263)
204 PF03704 BTAD: Bacterial trans 97.1 0.016 3.5E-07 44.4 12.0 70 214-290 64-138 (146)
205 PF13281 DUF4071: Domain of un 97.1 0.15 3.4E-06 45.0 19.0 169 215-388 144-335 (374)
206 PRK10803 tol-pal system protei 97.1 0.018 3.9E-07 48.7 13.0 99 144-242 145-247 (263)
207 KOG2041 WD40 repeat protein [G 96.9 0.022 4.8E-07 53.2 12.7 206 139-383 689-903 (1189)
208 COG4105 ComL DNA uptake lipopr 96.9 0.18 3.9E-06 41.7 19.4 61 218-282 173-233 (254)
209 PF13424 TPR_12: Tetratricopep 96.9 0.0018 3.8E-08 43.5 4.4 69 212-281 5-74 (78)
210 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.033 7.2E-07 49.9 13.1 66 104-171 72-141 (453)
211 PF12921 ATP13: Mitochondrial 96.9 0.027 5.9E-07 41.6 10.6 87 212-298 2-98 (126)
212 PF12921 ATP13: Mitochondrial 96.8 0.03 6.4E-07 41.4 10.3 99 252-370 1-100 (126)
213 PF10300 DUF3808: Protein of u 96.8 0.088 1.9E-06 48.9 15.7 168 216-386 192-375 (468)
214 PRK15331 chaperone protein Sic 96.8 0.014 3E-07 44.7 8.6 87 117-205 47-133 (165)
215 PF13424 TPR_12: Tetratricopep 96.8 0.0052 1.1E-07 41.2 5.9 61 325-385 7-73 (78)
216 COG3118 Thioredoxin domain-con 96.8 0.26 5.6E-06 41.6 16.5 148 79-230 142-290 (304)
217 PRK15331 chaperone protein Sic 96.8 0.1 2.3E-06 40.0 13.2 88 221-316 46-133 (165)
218 PF13371 TPR_9: Tetratricopept 96.7 0.014 2.9E-07 38.5 7.8 55 186-241 4-58 (73)
219 PF13281 DUF4071: Domain of un 96.7 0.41 9E-06 42.4 20.7 164 181-352 145-334 (374)
220 PF13371 TPR_9: Tetratricopept 96.7 0.012 2.6E-07 38.8 7.0 56 296-352 3-58 (73)
221 PF04840 Vps16_C: Vps16, C-ter 96.6 0.41 8.8E-06 41.9 23.2 110 214-349 179-288 (319)
222 PF04053 Coatomer_WDAD: Coatom 96.6 0.048 1E-06 49.9 12.3 154 85-279 275-428 (443)
223 KOG2610 Uncharacterized conser 96.5 0.1 2.2E-06 44.6 12.9 155 81-238 113-273 (491)
224 KOG4555 TPR repeat-containing 96.5 0.059 1.3E-06 39.2 9.7 92 79-172 51-145 (175)
225 KOG3941 Intermediate in Toll s 96.5 0.029 6.3E-07 46.6 9.1 34 159-192 140-173 (406)
226 COG5107 RNA14 Pre-mRNA 3'-end 96.4 0.72 1.6E-05 41.4 25.4 129 254-386 398-530 (660)
227 PF04053 Coatomer_WDAD: Coatom 96.3 0.14 3E-06 47.0 13.6 157 116-313 270-427 (443)
228 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.18 3.9E-06 45.4 13.9 66 174-241 72-141 (453)
229 KOG1585 Protein required for f 96.2 0.54 1.2E-05 38.5 14.8 118 190-311 123-250 (308)
230 KOG0543 FKBP-type peptidyl-pro 96.2 0.12 2.6E-06 45.5 11.9 91 150-241 216-320 (397)
231 KOG1538 Uncharacterized conser 96.2 0.42 9.1E-06 44.7 15.6 170 89-282 618-802 (1081)
232 PRK11906 transcriptional regul 96.2 0.57 1.2E-05 42.4 16.2 149 87-238 274-433 (458)
233 PF09205 DUF1955: Domain of un 96.2 0.33 7.2E-06 35.6 14.8 65 289-354 87-151 (161)
234 COG0457 NrfG FOG: TPR repeat [ 96.1 0.61 1.3E-05 38.2 25.9 187 87-281 39-230 (291)
235 COG5107 RNA14 Pre-mRNA 3'-end 96.1 0.99 2.2E-05 40.5 19.4 144 179-333 399-545 (660)
236 KOG3941 Intermediate in Toll s 96.1 0.08 1.7E-06 44.1 9.8 32 342-373 142-173 (406)
237 KOG4555 TPR repeat-containing 96.1 0.21 4.6E-06 36.5 10.7 89 153-242 54-145 (175)
238 KOG0543 FKBP-type peptidyl-pro 96.1 0.15 3.3E-06 44.8 12.0 93 183-282 214-320 (397)
239 PF04184 ST7: ST7 protein; In 96.0 0.36 7.8E-06 43.9 14.1 78 144-221 261-340 (539)
240 COG4649 Uncharacterized protei 96.0 0.5 1.1E-05 36.5 12.8 134 108-242 60-197 (221)
241 COG3118 Thioredoxin domain-con 96.0 0.86 1.9E-05 38.6 17.5 142 151-302 143-286 (304)
242 PF09205 DUF1955: Domain of un 95.9 0.46 1E-05 34.9 14.4 140 223-390 13-152 (161)
243 COG0457 NrfG FOG: TPR repeat [ 95.9 0.79 1.7E-05 37.5 29.3 225 121-352 37-265 (291)
244 smart00299 CLH Clathrin heavy 95.8 0.59 1.3E-05 35.3 14.4 41 113-154 13-53 (140)
245 PF08631 SPO22: Meiosis protei 95.7 1.2 2.5E-05 38.4 25.9 163 213-384 85-272 (278)
246 PF10300 DUF3808: Protein of u 95.7 1 2.3E-05 41.9 16.8 162 181-351 192-375 (468)
247 PF13170 DUF4003: Protein of u 95.7 1.3 2.7E-05 38.4 17.8 27 340-366 199-225 (297)
248 smart00299 CLH Clathrin heavy 95.6 0.67 1.5E-05 35.0 15.0 120 81-224 17-137 (140)
249 KOG2280 Vacuolar assembly/sort 95.6 2.3 4.9E-05 40.8 21.4 123 80-205 446-574 (829)
250 COG1729 Uncharacterized protei 95.5 0.47 1E-05 39.6 12.3 97 255-352 144-244 (262)
251 KOG2610 Uncharacterized conser 95.5 0.5 1.1E-05 40.6 12.5 154 223-385 114-274 (491)
252 COG4105 ComL DNA uptake lipopr 95.5 1.2 2.5E-05 37.0 21.0 57 294-351 173-232 (254)
253 COG4785 NlpI Lipoprotein NlpI, 95.5 1 2.2E-05 36.3 15.6 192 79-282 73-266 (297)
254 PF13512 TPR_18: Tetratricopep 95.5 0.68 1.5E-05 34.8 11.8 76 114-189 17-94 (142)
255 COG1729 Uncharacterized protei 95.3 0.36 7.9E-06 40.3 10.9 88 154-241 153-244 (262)
256 KOG1550 Extracellular protein 95.2 3.1 6.6E-05 39.9 23.6 275 86-388 227-539 (552)
257 KOG1941 Acetylcholine receptor 95.2 0.88 1.9E-05 39.6 12.9 50 79-128 14-64 (518)
258 PF07079 DUF1347: Protein of u 95.2 2.4 5.1E-05 38.3 26.0 113 269-384 396-521 (549)
259 COG3898 Uncharacterized membra 95.1 2.2 4.8E-05 37.7 24.5 251 79-352 128-392 (531)
260 KOG1941 Acetylcholine receptor 95.1 1.6 3.4E-05 38.2 14.2 232 117-350 16-273 (518)
261 PF10602 RPN7: 26S proteasome 94.9 0.59 1.3E-05 37.0 10.9 96 144-241 38-142 (177)
262 PF04184 ST7: ST7 protein; In 94.9 0.96 2.1E-05 41.2 13.0 77 292-368 263-341 (539)
263 PF08631 SPO22: Meiosis protei 94.9 2.3 4.9E-05 36.6 25.5 222 119-350 5-273 (278)
264 PF13512 TPR_18: Tetratricopep 94.8 0.47 1E-05 35.6 9.2 76 81-156 20-96 (142)
265 PF09613 HrpB1_HrpK: Bacterial 94.7 1.1 2.4E-05 34.3 11.3 49 86-136 25-73 (160)
266 PF13428 TPR_14: Tetratricopep 94.7 0.15 3.3E-06 29.5 5.3 40 214-260 3-42 (44)
267 PF13428 TPR_14: Tetratricopep 94.6 0.14 3E-06 29.7 5.1 20 185-204 9-28 (44)
268 PRK11906 transcriptional regul 94.6 3.5 7.5E-05 37.6 17.3 163 108-278 252-432 (458)
269 KOG1585 Protein required for f 94.6 2.2 4.8E-05 35.2 16.6 25 145-169 34-58 (308)
270 COG3629 DnrI DNA-binding trans 94.5 0.49 1.1E-05 40.1 9.9 79 212-297 153-236 (280)
271 COG3629 DnrI DNA-binding trans 94.4 0.68 1.5E-05 39.3 10.4 78 143-221 154-236 (280)
272 PF13431 TPR_17: Tetratricopep 94.3 0.07 1.5E-06 28.9 3.0 32 94-127 2-33 (34)
273 PF10602 RPN7: 26S proteasome 94.1 1.5 3.2E-05 34.8 11.4 65 177-241 36-102 (177)
274 PF07035 Mic1: Colon cancer-as 94.1 2.2 4.7E-05 33.3 15.6 134 128-281 15-148 (167)
275 KOG2114 Vacuolar assembly/sort 94.1 2.8 6E-05 40.8 14.7 210 145-387 337-550 (933)
276 KOG0276 Vesicle coat complex C 93.9 1.1 2.3E-05 41.8 11.3 132 109-279 616-747 (794)
277 PF13170 DUF4003: Protein of u 93.9 3.9 8.5E-05 35.5 20.0 134 193-331 78-225 (297)
278 TIGR02561 HrpB1_HrpK type III 93.7 2.3 5E-05 32.2 10.8 52 84-137 23-74 (153)
279 COG4649 Uncharacterized protei 93.4 2.9 6.3E-05 32.5 13.6 138 253-391 59-200 (221)
280 PF13176 TPR_7: Tetratricopept 93.4 0.19 4.2E-06 27.6 3.9 24 110-133 2-25 (36)
281 PF13176 TPR_7: Tetratricopept 93.4 0.24 5.2E-06 27.2 4.2 26 360-385 1-26 (36)
282 KOG1920 IkappaB kinase complex 93.2 11 0.00024 38.5 21.4 28 108-135 791-820 (1265)
283 COG1747 Uncharacterized N-term 93.1 7.1 0.00015 36.0 22.0 182 103-297 62-248 (711)
284 KOG1920 IkappaB kinase complex 93.0 12 0.00026 38.3 19.1 115 250-384 932-1052(1265)
285 PF02259 FAT: FAT domain; Int 92.7 7.1 0.00015 34.8 21.0 66 251-316 144-212 (352)
286 KOG1550 Extracellular protein 92.5 10 0.00022 36.4 21.3 178 158-353 228-427 (552)
287 KOG2114 Vacuolar assembly/sort 92.4 12 0.00026 36.8 18.3 176 110-314 337-516 (933)
288 KOG4570 Uncharacterized conser 92.2 2.4 5.1E-05 36.4 10.1 102 249-352 60-164 (418)
289 COG4785 NlpI Lipoprotein NlpI, 91.9 5.8 0.00013 32.2 16.6 160 177-352 99-266 (297)
290 PF07035 Mic1: Colon cancer-as 91.5 5.5 0.00012 31.0 15.6 130 163-312 15-144 (167)
291 cd00923 Cyt_c_Oxidase_Va Cytoc 91.4 2.2 4.7E-05 29.5 7.4 45 306-350 25-69 (103)
292 PF13431 TPR_17: Tetratricopep 91.3 0.24 5.1E-06 26.8 2.4 24 250-273 10-33 (34)
293 PF13929 mRNA_stabil: mRNA sta 91.2 7.8 0.00017 33.0 12.2 136 89-226 146-292 (292)
294 KOG1586 Protein required for f 91.0 7.8 0.00017 31.9 11.9 25 296-320 162-186 (288)
295 PF00515 TPR_1: Tetratricopept 90.7 0.64 1.4E-05 24.9 3.9 27 109-135 3-29 (34)
296 PRK15180 Vi polysaccharide bio 90.6 5.9 0.00013 36.2 11.4 121 83-207 301-421 (831)
297 PF02284 COX5A: Cytochrome c o 90.6 1.6 3.6E-05 30.4 6.3 41 311-351 33-73 (108)
298 PF11207 DUF2989: Protein of u 90.5 3.6 7.8E-05 33.0 9.1 73 305-378 123-198 (203)
299 KOG4570 Uncharacterized conser 90.0 5.9 0.00013 34.1 10.4 46 193-238 116-161 (418)
300 PF13374 TPR_10: Tetratricopep 89.8 1 2.2E-05 25.2 4.5 28 359-386 3-30 (42)
301 COG1747 Uncharacterized N-term 89.7 17 0.00037 33.7 24.8 177 176-366 65-247 (711)
302 KOG4648 Uncharacterized conser 89.7 2.5 5.4E-05 36.7 8.1 95 75-172 101-195 (536)
303 PF00515 TPR_1: Tetratricopept 89.4 1.4 2.9E-05 23.5 4.5 29 359-387 2-30 (34)
304 PF13374 TPR_10: Tetratricopep 89.3 0.98 2.1E-05 25.4 4.1 27 108-134 3-29 (42)
305 PF02259 FAT: FAT domain; Int 89.2 16 0.00034 32.6 17.3 65 287-351 145-212 (352)
306 PF11207 DUF2989: Protein of u 89.1 7.8 0.00017 31.1 10.0 73 159-232 123-198 (203)
307 KOG4234 TPR repeat-containing 89.0 3.8 8.2E-05 32.8 8.0 93 78-171 102-197 (271)
308 cd00923 Cyt_c_Oxidase_Va Cytoc 88.9 3.9 8.4E-05 28.3 7.0 45 125-169 25-69 (103)
309 PF07719 TPR_2: Tetratricopept 88.9 1.1 2.3E-05 23.8 3.9 27 109-135 3-29 (34)
310 KOG4234 TPR repeat-containing 88.2 7.9 0.00017 31.0 9.4 57 219-282 141-197 (271)
311 PF07163 Pex26: Pex26 protein; 88.0 7.8 0.00017 32.8 9.7 88 113-200 89-181 (309)
312 KOG4648 Uncharacterized conser 87.9 2.1 4.5E-05 37.1 6.6 93 261-357 105-197 (536)
313 PF07719 TPR_2: Tetratricopept 87.9 1.9 4.2E-05 22.8 4.5 29 359-387 2-30 (34)
314 PF00637 Clathrin: Region in C 87.6 0.2 4.3E-06 38.1 0.4 87 258-351 12-98 (143)
315 PF04097 Nic96: Nup93/Nic96; 87.5 15 0.00034 35.7 13.1 89 114-207 265-357 (613)
316 PF09613 HrpB1_HrpK: Bacterial 87.5 11 0.00025 29.0 13.4 52 223-282 21-73 (160)
317 PRK09687 putative lyase; Provi 87.2 19 0.0004 31.1 27.7 234 105-369 35-278 (280)
318 PF07079 DUF1347: Protein of u 87.1 24 0.00051 32.3 26.1 228 122-365 274-532 (549)
319 PF07163 Pex26: Pex26 protein; 86.3 13 0.00027 31.6 10.0 90 146-235 87-181 (309)
320 COG2909 MalT ATP-dependent tra 86.2 39 0.00083 33.8 25.3 223 152-383 425-684 (894)
321 PF00637 Clathrin: Region in C 86.0 0.33 7.2E-06 36.9 0.9 53 253-312 42-94 (143)
322 PF13181 TPR_8: Tetratricopept 85.7 2.9 6.2E-05 22.1 4.4 27 360-386 3-29 (34)
323 TIGR03504 FimV_Cterm FimV C-te 85.6 1.9 4E-05 25.0 3.6 24 364-387 5-28 (44)
324 COG4455 ImpE Protein of avirul 85.2 9 0.00019 31.2 8.3 77 255-332 3-81 (273)
325 KOG2280 Vacuolar assembly/sort 84.8 41 0.00089 32.9 24.5 297 76-385 394-771 (829)
326 PF02284 COX5A: Cytochrome c o 84.6 12 0.00025 26.4 9.3 46 196-241 29-74 (108)
327 PF07721 TPR_4: Tetratricopept 84.6 1.6 3.4E-05 21.8 2.7 21 362-382 5-25 (26)
328 TIGR03504 FimV_Cterm FimV C-te 84.5 2.7 6E-05 24.3 4.0 24 329-352 5-28 (44)
329 PRK15180 Vi polysaccharide bio 84.1 35 0.00076 31.5 13.0 120 189-318 301-421 (831)
330 TIGR02561 HrpB1_HrpK type III 84.1 17 0.00036 27.7 11.4 53 264-318 21-74 (153)
331 KOG0276 Vesicle coat complex C 84.0 16 0.00035 34.5 10.5 103 116-239 646-748 (794)
332 PF06552 TOM20_plant: Plant sp 83.9 16 0.00035 28.8 9.0 28 193-222 96-123 (186)
333 PF13181 TPR_8: Tetratricopept 83.7 3.3 7.1E-05 21.9 4.0 27 109-135 3-29 (34)
334 COG3947 Response regulator con 82.5 31 0.00066 29.6 15.4 183 193-385 103-340 (361)
335 PF10579 Rapsyn_N: Rapsyn N-te 82.3 2.6 5.6E-05 27.9 3.6 47 83-129 18-65 (80)
336 PHA02875 ankyrin repeat protei 82.1 29 0.00062 31.9 12.0 209 117-358 9-230 (413)
337 KOG4077 Cytochrome c oxidase, 81.9 12 0.00026 27.4 7.1 46 307-352 68-113 (149)
338 PF08424 NRDE-2: NRDE-2, neces 81.8 36 0.00078 30.0 17.2 142 250-393 16-190 (321)
339 PF13174 TPR_6: Tetratricopept 81.8 3.1 6.6E-05 21.7 3.4 26 362-387 4-29 (33)
340 COG2909 MalT ATP-dependent tra 81.5 62 0.0013 32.4 24.1 201 189-391 427-651 (894)
341 COG0790 FOG: TPR repeat, SEL1 81.1 35 0.00077 29.4 22.8 83 154-242 53-143 (292)
342 KOG4642 Chaperone-dependent E3 80.9 31 0.00068 28.7 12.6 124 75-202 14-142 (284)
343 COG0790 FOG: TPR repeat, SEL1 80.8 36 0.00078 29.4 22.0 154 79-242 49-221 (292)
344 COG5159 RPN6 26S proteasome re 80.7 35 0.00076 29.2 11.3 126 113-238 9-151 (421)
345 COG2976 Uncharacterized protei 80.2 29 0.00062 27.8 13.5 89 295-388 96-189 (207)
346 KOG2471 TPR repeat-containing 79.5 53 0.0012 30.5 13.7 108 261-370 248-381 (696)
347 COG3947 Response regulator con 79.3 40 0.00087 29.0 15.8 110 250-360 224-355 (361)
348 KOG1258 mRNA processing protei 79.1 60 0.0013 30.9 30.1 103 265-372 378-489 (577)
349 KOG4507 Uncharacterized conser 78.8 20 0.00043 33.9 9.2 101 119-221 619-719 (886)
350 COG4455 ImpE Protein of avirul 77.8 22 0.00048 29.1 8.1 75 110-185 4-80 (273)
351 PF06552 TOM20_plant: Plant sp 77.6 22 0.00049 28.0 8.0 109 229-353 8-137 (186)
352 KOG0991 Replication factor C, 77.6 40 0.00086 28.0 12.2 102 263-368 169-282 (333)
353 TIGR02508 type_III_yscG type I 77.5 22 0.00047 24.9 8.7 78 87-172 21-98 (115)
354 COG2976 Uncharacterized protei 76.1 39 0.00084 27.1 13.7 88 185-283 97-189 (207)
355 PF08311 Mad3_BUB1_I: Mad3/BUB 75.6 13 0.00028 27.5 6.1 45 124-168 80-125 (126)
356 PF07575 Nucleopor_Nup85: Nup8 75.1 38 0.00082 32.7 10.8 31 336-366 508-538 (566)
357 KOG3807 Predicted membrane pro 73.9 61 0.0013 28.4 11.0 64 147-210 280-344 (556)
358 PF10579 Rapsyn_N: Rapsyn N-te 73.9 13 0.00029 24.6 5.0 45 300-344 18-64 (80)
359 PF11846 DUF3366: Domain of un 73.4 23 0.00049 28.5 7.7 33 320-352 141-173 (193)
360 PF09986 DUF2225: Uncharacteri 73.3 50 0.0011 27.1 10.6 64 325-388 120-195 (214)
361 PF14689 SPOB_a: Sensor_kinase 73.1 13 0.00027 23.5 4.8 23 363-385 28-50 (62)
362 KOG2063 Vacuolar assembly/sort 72.4 1.2E+02 0.0025 31.0 19.2 116 109-224 506-638 (877)
363 KOG1464 COP9 signalosome, subu 71.7 62 0.0013 27.5 18.4 193 121-314 41-257 (440)
364 PF10345 Cohesin_load: Cohesin 71.7 1.1E+02 0.0023 30.1 27.4 154 83-238 72-251 (608)
365 KOG0686 COP9 signalosome, subu 71.2 81 0.0018 28.6 15.6 166 143-316 151-332 (466)
366 TIGR02508 type_III_yscG type I 71.0 33 0.00072 24.1 7.6 78 269-353 21-98 (115)
367 PF13762 MNE1: Mitochondrial s 71.0 44 0.00095 25.4 10.5 84 290-373 41-130 (145)
368 PHA02875 ankyrin repeat protei 70.7 86 0.0019 28.7 16.1 203 92-323 16-230 (413)
369 KOG4507 Uncharacterized conser 70.4 66 0.0014 30.7 10.3 113 251-365 605-717 (886)
370 smart00028 TPR Tetratricopepti 69.0 8.1 0.00018 19.1 3.0 27 109-135 3-29 (34)
371 cd00280 TRFH Telomeric Repeat 69.0 40 0.00087 26.7 7.5 49 87-135 85-139 (200)
372 KOG4077 Cytochrome c oxidase, 68.8 40 0.00087 24.8 6.9 43 163-205 70-112 (149)
373 COG0735 Fur Fe2+/Zn2+ uptake r 68.6 50 0.0011 25.2 8.1 43 132-175 11-53 (145)
374 PF10345 Cohesin_load: Cohesin 68.6 1.2E+02 0.0027 29.6 29.3 193 87-280 37-252 (608)
375 KOG2297 Predicted translation 68.4 80 0.0017 27.4 16.3 69 264-342 266-340 (412)
376 PF13762 MNE1: Mitochondrial s 68.2 51 0.0011 25.1 9.1 24 110-133 42-65 (145)
377 PF14689 SPOB_a: Sensor_kinase 68.0 22 0.00049 22.3 5.1 24 217-240 28-51 (62)
378 PRK10941 hypothetical protein; 67.4 36 0.00078 29.1 7.7 78 110-188 184-262 (269)
379 KOG0687 26S proteasome regulat 66.7 90 0.002 27.4 10.6 124 267-392 36-178 (393)
380 PRK09687 putative lyase; Provi 66.4 86 0.0019 27.1 27.2 219 140-387 35-263 (280)
381 KOG0686 COP9 signalosome, subu 66.3 1E+02 0.0022 28.0 15.1 182 177-366 150-352 (466)
382 PF08424 NRDE-2: NRDE-2, neces 64.5 1E+02 0.0022 27.2 19.3 119 228-354 47-185 (321)
383 PF11848 DUF3368: Domain of un 64.4 27 0.00059 20.6 5.1 33 334-366 13-45 (48)
384 COG5187 RPN7 26S proteasome re 64.0 96 0.0021 26.7 9.4 97 287-385 114-219 (412)
385 PRK09857 putative transposase; 63.7 54 0.0012 28.5 8.3 27 364-390 246-272 (292)
386 PF11663 Toxin_YhaV: Toxin wit 63.6 8.5 0.00018 28.5 2.8 32 265-298 107-138 (140)
387 PF14669 Asp_Glu_race_2: Putat 63.6 76 0.0017 25.5 12.5 55 293-347 137-205 (233)
388 PRK10564 maltose regulon perip 63.4 17 0.00036 31.3 4.9 31 109-139 259-289 (303)
389 KOG0890 Protein kinase of the 63.4 2.8E+02 0.006 31.8 21.4 63 323-388 1670-1732(2382)
390 PRK11619 lytic murein transgly 62.6 1.6E+02 0.0036 29.0 25.9 260 112-385 104-373 (644)
391 PF11846 DUF3366: Domain of un 62.5 42 0.00092 26.9 7.2 56 262-317 117-173 (193)
392 PRK10564 maltose regulon perip 62.0 19 0.00041 31.0 5.1 31 291-321 260-290 (303)
393 PF11663 Toxin_YhaV: Toxin wit 62.0 8 0.00017 28.7 2.5 29 191-221 109-137 (140)
394 PF10475 DUF2450: Protein of u 61.9 94 0.002 27.0 9.5 27 255-281 129-155 (291)
395 KOG2659 LisH motif-containing 61.7 92 0.002 25.7 9.7 94 106-201 25-127 (228)
396 PF11848 DUF3368: Domain of un 61.5 31 0.00068 20.3 5.0 29 190-218 15-43 (48)
397 smart00777 Mad3_BUB1_I Mad3/BU 60.9 23 0.0005 26.1 4.8 43 124-166 80-123 (125)
398 PF12862 Apc5: Anaphase-promot 60.8 31 0.00067 23.8 5.3 19 116-134 50-68 (94)
399 KOG0292 Vesicle coat complex C 59.9 52 0.0011 33.0 8.0 128 154-317 655-782 (1202)
400 PF09670 Cas_Cas02710: CRISPR- 59.1 1.4E+02 0.0031 27.1 11.2 55 116-171 140-198 (379)
401 PF09477 Type_III_YscG: Bacter 59.0 63 0.0014 23.1 9.7 78 87-172 22-99 (116)
402 PF09670 Cas_Cas02710: CRISPR- 59.0 1.4E+02 0.0031 27.1 11.8 56 261-317 139-198 (379)
403 COG5159 RPN6 26S proteasome re 58.9 1.2E+02 0.0026 26.2 14.1 23 292-314 129-151 (421)
404 KOG0403 Neoplastic transformat 58.1 1.6E+02 0.0034 27.3 15.4 62 327-389 513-574 (645)
405 smart00777 Mad3_BUB1_I Mad3/BU 57.5 65 0.0014 23.8 6.6 44 159-202 80-124 (125)
406 PF12862 Apc5: Anaphase-promot 57.0 62 0.0013 22.3 7.2 53 299-351 9-69 (94)
407 smart00386 HAT HAT (Half-A-TPR 56.6 25 0.00055 17.8 4.0 28 337-365 1-28 (33)
408 COG5187 RPN7 26S proteasome re 56.5 1.3E+02 0.0029 25.9 13.9 102 176-281 114-220 (412)
409 cd08819 CARD_MDA5_2 Caspase ac 55.6 64 0.0014 22.0 6.9 38 189-231 48-85 (88)
410 PRK10941 hypothetical protein; 55.6 1.3E+02 0.0029 25.7 10.7 63 179-242 183-245 (269)
411 KOG4642 Chaperone-dependent E3 55.3 1.3E+02 0.0027 25.3 10.7 122 152-279 20-143 (284)
412 PF15297 CKAP2_C: Cytoskeleton 55.1 1E+02 0.0022 27.3 8.3 64 88-151 120-184 (353)
413 KOG4279 Serine/threonine prote 55.1 2.3E+02 0.0049 28.3 12.8 190 194-387 180-395 (1226)
414 KOG2396 HAT (Half-A-TPR) repea 55.1 1.9E+02 0.004 27.2 22.8 100 285-386 456-558 (568)
415 PF02847 MA3: MA3 domain; Int 54.4 70 0.0015 22.8 6.5 24 257-280 6-29 (113)
416 KOG1308 Hsp70-interacting prot 54.2 10 0.00022 33.2 2.2 86 154-242 126-212 (377)
417 COG5108 RPO41 Mitochondrial DN 54.0 1.2E+02 0.0027 29.5 9.1 91 147-240 33-131 (1117)
418 KOG2396 HAT (Half-A-TPR) repea 53.7 2E+02 0.0043 27.1 27.8 71 320-391 456-530 (568)
419 cd08819 CARD_MDA5_2 Caspase ac 53.5 70 0.0015 21.8 6.8 68 195-274 20-87 (88)
420 KOG0292 Vesicle coat complex C 53.0 96 0.0021 31.3 8.5 176 120-351 606-781 (1202)
421 PF11817 Foie-gras_1: Foie gra 52.3 77 0.0017 26.7 7.3 23 257-279 182-204 (247)
422 PF10366 Vps39_1: Vacuolar sor 52.0 86 0.0019 22.4 7.6 27 325-351 41-67 (108)
423 KOG0376 Serine-threonine phosp 51.9 45 0.00097 30.8 5.9 99 223-332 15-114 (476)
424 PRK08691 DNA polymerase III su 51.5 2.6E+02 0.0056 27.9 11.5 86 268-356 179-278 (709)
425 KOG1839 Uncharacterized protei 51.5 2.3E+02 0.005 30.1 11.2 159 152-310 942-1121(1236)
426 PF07575 Nucleopor_Nup85: Nup8 51.5 72 0.0016 30.9 7.8 31 300-330 507-537 (566)
427 KOG2066 Vacuolar assembly/sort 51.4 2.6E+02 0.0057 27.9 21.1 146 85-240 370-533 (846)
428 KOG3364 Membrane protein invol 51.1 59 0.0013 24.4 5.4 49 87-135 51-99 (149)
429 KOG0376 Serine-threonine phosp 51.1 40 0.00088 31.0 5.5 104 80-188 13-116 (476)
430 cd00280 TRFH Telomeric Repeat 51.0 1.3E+02 0.0027 24.1 10.7 23 183-205 117-139 (200)
431 KOG1464 COP9 signalosome, subu 50.7 1.6E+02 0.0035 25.2 17.4 205 137-343 21-251 (440)
432 KOG4567 GTPase-activating prot 50.3 1.2E+02 0.0025 26.5 7.7 58 273-335 263-320 (370)
433 KOG2066 Vacuolar assembly/sort 50.2 2.8E+02 0.006 27.8 14.6 168 149-351 363-533 (846)
434 KOG4567 GTPase-activating prot 50.1 1.4E+02 0.0029 26.1 8.0 71 162-237 263-343 (370)
435 TIGR01503 MthylAspMut_E methyl 48.4 2.3E+02 0.005 26.4 12.9 79 83-171 26-115 (480)
436 PF14853 Fis1_TPR_C: Fis1 C-te 48.2 61 0.0013 19.6 5.6 30 113-144 7-36 (53)
437 KOG2659 LisH motif-containing 48.1 1.6E+02 0.0034 24.4 9.3 20 330-349 71-90 (228)
438 PF11817 Foie-gras_1: Foie gra 47.7 1.2E+02 0.0026 25.6 7.7 65 214-279 180-244 (247)
439 PF14561 TPR_20: Tetratricopep 47.6 90 0.002 21.4 8.8 53 105-157 20-73 (90)
440 cd07153 Fur_like Ferric uptake 47.5 61 0.0013 23.3 5.3 47 113-159 6-52 (116)
441 COG0735 Fur Fe2+/Zn2+ uptake r 47.5 56 0.0012 24.9 5.2 50 110-159 23-72 (145)
442 PRK14963 DNA polymerase III su 46.7 2.7E+02 0.0058 26.6 11.1 47 269-317 177-224 (504)
443 KOG1308 Hsp70-interacting prot 46.7 19 0.00041 31.5 2.7 92 224-323 126-217 (377)
444 KOG1258 mRNA processing protei 46.7 2.7E+02 0.0059 26.7 28.1 290 88-387 62-395 (577)
445 KOG3636 Uncharacterized conser 46.6 2.4E+02 0.0052 26.0 17.7 197 94-299 42-271 (669)
446 PF01475 FUR: Ferric uptake re 46.5 52 0.0011 23.9 4.8 48 112-159 12-59 (120)
447 COG5108 RPO41 Mitochondrial DN 45.9 2.2E+02 0.0048 27.9 9.5 90 258-350 33-130 (1117)
448 PF10366 Vps39_1: Vacuolar sor 45.8 1.1E+02 0.0024 21.9 7.8 27 214-240 41-67 (108)
449 PRK14951 DNA polymerase III su 45.3 3.1E+02 0.0067 27.0 11.2 85 269-356 185-283 (618)
450 PRK09857 putative transposase; 45.2 2.1E+02 0.0045 24.9 9.4 66 291-357 209-274 (292)
451 PF09454 Vps23_core: Vps23 cor 44.5 46 0.001 21.2 3.6 28 145-172 11-38 (65)
452 KOG0890 Protein kinase of the 44.3 5.6E+02 0.012 29.6 21.1 62 288-352 1670-1731(2382)
453 PRK12356 glutaminase; Reviewed 44.1 2.1E+02 0.0045 25.3 8.5 108 270-383 140-256 (319)
454 PF03745 DUF309: Domain of unk 43.8 81 0.0018 19.8 5.4 15 155-169 12-26 (62)
455 KOG1839 Uncharacterized protei 43.5 3.2E+02 0.007 29.1 10.9 130 105-234 971-1121(1236)
456 KOG3364 Membrane protein invol 42.0 1.5E+02 0.0033 22.4 9.1 49 158-206 51-100 (149)
457 PRK14956 DNA polymerase III su 41.7 3.1E+02 0.0067 25.9 12.0 37 322-358 247-283 (484)
458 KOG2582 COP9 signalosome, subu 41.6 2.6E+02 0.0057 25.1 17.0 56 333-388 287-346 (422)
459 KOG3807 Predicted membrane pro 41.6 2.5E+02 0.0054 24.8 11.6 57 294-352 281-340 (556)
460 PF09454 Vps23_core: Vps23 cor 41.3 56 0.0012 20.8 3.6 46 322-368 7-52 (65)
461 PRK11639 zinc uptake transcrip 41.3 1.7E+02 0.0037 22.9 7.2 48 112-159 30-77 (169)
462 KOG2297 Predicted translation 41.3 2.5E+02 0.0053 24.6 17.8 72 298-378 265-341 (412)
463 PLN03025 replication factor C 40.8 2.5E+02 0.0055 24.7 10.8 88 269-359 160-260 (319)
464 PF09477 Type_III_YscG: Bacter 40.4 1.4E+02 0.003 21.5 8.9 88 120-215 19-106 (116)
465 PF04190 DUF410: Protein of un 40.2 2.3E+02 0.0051 24.1 18.7 104 83-202 2-115 (260)
466 KOG4814 Uncharacterized conser 39.9 3.6E+02 0.0079 26.4 9.8 99 70-169 353-455 (872)
467 PF12796 Ank_2: Ankyrin repeat 39.6 67 0.0015 21.4 4.3 13 380-392 74-86 (89)
468 PF11768 DUF3312: Protein of u 39.6 3.5E+02 0.0075 25.9 11.3 60 255-316 410-472 (545)
469 PF09868 DUF2095: Uncharacteri 39.3 1.4E+02 0.0031 21.5 5.5 34 113-147 67-100 (128)
470 PRK13342 recombination factor 39.3 3.1E+02 0.0068 25.3 19.3 47 256-302 230-279 (413)
471 PHA03100 ankyrin repeat protei 39.2 3.3E+02 0.0071 25.5 10.5 242 113-391 38-309 (480)
472 PF04910 Tcf25: Transcriptiona 38.8 3E+02 0.0065 24.9 19.0 57 295-351 110-167 (360)
473 KOG2034 Vacuolar sorting prote 38.1 4.5E+02 0.0098 26.8 24.7 23 256-278 533-555 (911)
474 PRK14958 DNA polymerase III su 37.9 3.7E+02 0.008 25.7 11.5 86 270-358 181-280 (509)
475 PF12926 MOZART2: Mitotic-spin 37.7 1.3E+02 0.0028 20.5 8.0 43 344-386 29-71 (88)
476 cd07153 Fur_like Ferric uptake 37.5 95 0.0021 22.2 5.0 49 293-341 5-53 (116)
477 PF09868 DUF2095: Uncharacteri 37.2 1.6E+02 0.0034 21.3 5.7 35 329-364 67-101 (128)
478 PF04097 Nic96: Nup93/Nic96; 36.8 4.2E+02 0.0092 26.1 17.7 46 108-155 113-158 (613)
479 KOG1114 Tripeptidyl peptidase 36.7 5E+02 0.011 26.9 16.7 80 305-385 1213-1293(1304)
480 KOG0989 Replication factor C, 36.2 3E+02 0.0066 24.2 11.3 99 278-379 200-311 (346)
481 PF04190 DUF410: Protein of un 35.9 2.8E+02 0.006 23.7 15.0 25 252-276 89-113 (260)
482 PHA03100 ankyrin repeat protei 35.3 3.8E+02 0.0082 25.1 10.1 80 148-235 38-128 (480)
483 PF15297 CKAP2_C: Cytoskeleton 35.3 3.3E+02 0.0071 24.3 9.8 63 305-369 120-186 (353)
484 COG4941 Predicted RNA polymera 34.9 3.3E+02 0.0072 24.3 11.3 115 269-386 272-393 (415)
485 KOG0551 Hsp90 co-chaperone CNS 34.9 2.1E+02 0.0046 25.4 7.1 98 70-169 80-180 (390)
486 PF02847 MA3: MA3 domain; Int 34.9 1.7E+02 0.0036 20.8 6.3 22 112-133 7-28 (113)
487 PF11838 ERAP1_C: ERAP1-like C 34.8 3.1E+02 0.0067 23.9 20.1 149 228-383 146-304 (324)
488 PRK06645 DNA polymerase III su 34.7 4.2E+02 0.009 25.4 11.2 86 269-357 189-291 (507)
489 KOG1166 Mitotic checkpoint ser 34.2 1.1E+02 0.0024 31.6 6.1 59 119-177 90-149 (974)
490 PF04090 RNA_pol_I_TF: RNA pol 34.2 2.6E+02 0.0055 22.8 7.4 60 289-349 42-102 (199)
491 PF11838 ERAP1_C: ERAP1-like C 34.1 3.2E+02 0.0069 23.9 19.9 82 193-283 146-231 (324)
492 PF02184 HAT: HAT (Half-A-TPR) 33.9 80 0.0017 16.8 3.4 22 339-362 3-24 (32)
493 PF11123 DNA_Packaging_2: DNA 33.5 1.4E+02 0.003 19.6 4.4 33 227-266 12-44 (82)
494 COG2256 MGS1 ATPase related to 33.4 3.9E+02 0.0084 24.6 14.0 151 194-351 192-352 (436)
495 PF07218 RAP1: Rhoptry-associa 33.0 4.4E+02 0.0096 25.2 10.5 140 227-386 595-757 (782)
496 PF12926 MOZART2: Mitotic-spin 32.6 1.6E+02 0.0036 20.0 7.7 14 171-184 37-50 (88)
497 PRK14951 DNA polymerase III su 32.3 5E+02 0.011 25.6 10.9 87 227-321 184-283 (618)
498 PRK09462 fur ferric uptake reg 32.1 2.3E+02 0.0049 21.5 7.4 63 277-340 6-69 (148)
499 COG4259 Uncharacterized protei 31.6 1.9E+02 0.0041 20.4 5.1 57 338-396 52-108 (121)
500 PF04090 RNA_pol_I_TF: RNA pol 31.5 2.9E+02 0.0062 22.5 7.5 64 107-170 41-104 (199)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.1e-53 Score=412.10 Aligned_cols=310 Identities=21% Similarity=0.327 Sum_probs=273.3
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 159 (396)
++++.|++++|.++|+.|.+.|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 456778888999999999888876 7888999999999999999999999999988888889999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA--FGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 237 (396)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999998888889999999999999999999999999998876 57788888999999999999999999999999
Q ss_pred HHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
|.+.+ ++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.
T Consensus 605 M~e~g------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 605 IHEYN------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHcC------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 88887 788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccC
Q 041816 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty 396 (396)
|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888888776
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-52 Score=407.98 Aligned_cols=311 Identities=22% Similarity=0.360 Sum_probs=303.7
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
.++++.|++++|.++|++|.+.|.. ||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 4577899999999999999999877 899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 041816 159 SHGFVVLGRILR--SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236 (396)
Q Consensus 159 ~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 236 (396)
++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|+
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999986 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
+|.+.+ +.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 639 eM~~~G------v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 639 DMKKKG------VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHcC------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999998 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccC
Q 041816 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396 (396)
Q Consensus 317 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty 396 (396)
.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 713 ~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ty 792 (1060)
T PLN03218 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998775
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-47 Score=368.55 Aligned_cols=301 Identities=19% Similarity=0.314 Sum_probs=205.0
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
...|++++|+++|++|...++..|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|++.|++++|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHH
Confidence 34445555555555555444333455555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHH-------------------------------HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 041816 162 FVVLGRI-------------------------------LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210 (396)
Q Consensus 162 ~~~~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 210 (396)
.++|++| .+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|+.+
T Consensus 178 ~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~ 257 (697)
T PLN03081 178 RRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257 (697)
T ss_pred HHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc
Confidence 5555554 444444444444444444444444444444444444555556
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhh
Q 041816 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290 (396)
Q Consensus 211 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 290 (396)
|..+|+.|+.+|++.|++++|.++|++|. ++|..+||.||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGMP----------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhCC----------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 66677888889999999999999998884 45788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041816 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370 (396)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 370 (396)
|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.|+++|++.|++++|.++|++|. .||..+|++||.+|++
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHH
Confidence 999999999999999999999999888888777777777777777777777777777664 3566666667666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccC
Q 041816 371 TGRVNHAKELFVSMESMGCKHTVFSY 396 (396)
Q Consensus 371 ~g~~~~A~~~~~~m~~~g~~p~~~ty 396 (396)
+|+.++|.++|++|.+.|+.||.+||
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 67767777777666666666666664
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.1e-47 Score=365.03 Aligned_cols=298 Identities=19% Similarity=0.320 Sum_probs=243.0
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 159 (396)
.+.+.|++++|.++|+.|.+ |+..+||.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 46788999999999999843 7899999999999999999999999999999999999998888888888888888
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
.+.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888877753 477788888888888888888888888887
Q ss_pred hcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 041816 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 319 (396)
+.+ +.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+
T Consensus 318 ~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--- 388 (697)
T PLN03081 318 DSG------VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--- 388 (697)
T ss_pred HcC------CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---
Confidence 777 67788888888888888888888888888887777777877888888888888888888888777743
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCcccC
Q 041816 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES-MGCKHTVFSY 396 (396)
Q Consensus 320 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~ty 396 (396)
||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 677778888888888888888888888887777778888888888888888888888888877765 5777777665
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-45 Score=363.13 Aligned_cols=303 Identities=23% Similarity=0.319 Sum_probs=221.2
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
..+++.|++++|.++|+.|.. +|+.+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 346788999999999999843 688899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
+.|.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888888888886 357778888888888888888888888888
Q ss_pred HhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 041816 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ- 317 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~- 317 (396)
.+.+ +.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.
T Consensus 381 ~~~g------~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 454 (857)
T PLN03077 381 EQDN------VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454 (857)
T ss_pred HHhC------CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 7776 566666666666666666666666666666666555555555555555555555555554444443221
Q ss_pred -----------------------------CCCC-----------------------------------------------
Q 041816 318 -----------------------------GVQP----------------------------------------------- 321 (396)
Q Consensus 318 -----------------------------~~~p----------------------------------------------- 321 (396)
++.|
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 2333
Q ss_pred ------------------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 322 ------------------DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383 (396)
Q Consensus 322 ------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 383 (396)
|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++
T Consensus 535 ~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 535 VRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 33445555555555556666666666666666666666666666666666666666666666
Q ss_pred HH-hCCCCCCcccC
Q 041816 384 ME-SMGCKHTVFSY 396 (396)
Q Consensus 384 m~-~~g~~p~~~ty 396 (396)
|. +.|+.|+..+|
T Consensus 615 M~~~~gi~P~~~~y 628 (857)
T PLN03077 615 MEEKYSITPNLKHY 628 (857)
T ss_pred HHHHhCCCCchHHH
Confidence 65 45666655443
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-44 Score=357.24 Aligned_cols=303 Identities=21% Similarity=0.263 Sum_probs=233.8
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
.++++.|++++|+++|++|...|.. ||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~~g~~-Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 339 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRELSVD-PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCH
Confidence 4577889999999999999988876 788888888888888888888888888888878777777777777777777777
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+
T Consensus 340 ~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 340 GEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred HHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 77777777664 34666667777777777777777777766666666666666666666666666666666666666
Q ss_pred HhcCCCCcccccCCHhhHHHHHHHHhccCCHHHH-------------------------------HHHHHHHhhCCC---
Q 041816 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA-------------------------------KELFLQMKDKNI--- 284 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-------------------------------~~~~~~m~~~~~--- 284 (396)
.+.+ +.|+..+|+.||.+|++.|++++| .++|++|.. ++
T Consensus 416 ~~~g------~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd 488 (857)
T PLN03077 416 ERKG------LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPN 488 (857)
T ss_pred HHhC------CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCC
Confidence 5555 344444444444444444444444 444444432 12
Q ss_pred --------------------------------------------------------------CCChhhHHHHHHHHHhcC
Q 041816 285 --------------------------------------------------------------NPDVVTYNSLIHGFCYAN 302 (396)
Q Consensus 285 --------------------------------------------------------------~p~~~~~~~li~~~~~~~ 302 (396)
.||..+||++|.+|++.|
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G 568 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHG 568 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcC
Confidence 345667888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041816 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI-LRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381 (396)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 381 (396)
+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++
T Consensus 569 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~ 648 (857)
T PLN03077 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 6799999999999999999999999999999
Q ss_pred HHHHhCCCCCCcccC
Q 041816 382 VSMESMGCKHTVFSY 396 (396)
Q Consensus 382 ~~m~~~g~~p~~~ty 396 (396)
++|. ++||..+|
T Consensus 649 ~~m~---~~pd~~~~ 660 (857)
T PLN03077 649 NKMP---ITPDPAVW 660 (857)
T ss_pred HHCC---CCCCHHHH
Confidence 9984 78887765
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=3.4e-24 Score=194.43 Aligned_cols=301 Identities=16% Similarity=0.129 Sum_probs=255.9
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcC
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD---LYTYNILINCFCKMG 156 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g 156 (396)
.+...|++++|+..|+++.+.++ .+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP--ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34567889999999999999765 4778899999999999999999999999987542222 256788899999999
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCChHHHH
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN----VITYSTLINGLCRTGHTIVAL 232 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~ 232 (396)
++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++++.+.+..+. ...+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999864 34788899999999999999999999999988753322 224567788889999999999
Q ss_pred HHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
..++++.+.. +.+...+..+...+.+.|++++|.++|+++...+......+++.++.+|...|++++|...++
T Consensus 201 ~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 201 ALLKKALAAD-------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred HHHHHHHhHC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998864 445678888999999999999999999999876543335678899999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCC
Q 041816 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL---TGRVNHAKELFVSMESMGC 389 (396)
Q Consensus 313 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~ 389 (396)
++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..++++|.+.++
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 99886 467677789999999999999999999999885 7899999988887765 5699999999999999888
Q ss_pred CCCcc
Q 041816 390 KHTVF 394 (396)
Q Consensus 390 ~p~~~ 394 (396)
.|+..
T Consensus 350 ~~~p~ 354 (389)
T PRK11788 350 KRKPR 354 (389)
T ss_pred hCCCC
Confidence 87753
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=1e-20 Score=190.09 Aligned_cols=291 Identities=15% Similarity=0.125 Sum_probs=155.1
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
..+...|++++|+.+++.+....+ .+...|..+..++...|++++|+..|+++.+.. +.+...+..+..++...|++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAAP--DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 334455666666666666655433 355566666666666666666666666665543 22445555666666666666
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
++|..+++++.+... .+...+..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|...++.+
T Consensus 652 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 652 AKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666666665432 245555555556666666666666665555543 234445555555555555555555555555
Q ss_pred HhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041816 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (396)
.... |+..++..++.++.+.|++++|.+.++.+.+.... +...+..+...|...|++++|...|+++.+..
T Consensus 730 ~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 730 LKRA--------PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HhhC--------CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 5432 22234444444444455555555544444443222 34444444444444444444444444444432
Q ss_pred CCCCHh---------------------------------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041816 319 VQPDVV---------------------------------TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365 (396)
Q Consensus 319 ~~p~~~---------------------------------~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 365 (396)
+.+.. ++..+...+...|++++|.+.++++.+.+. .+..++..+.
T Consensus 801 -p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 878 (899)
T TIGR02917 801 -PDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLA 878 (899)
T ss_pred -CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHH
Confidence 22333 344445555555555555555555555432 2555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 041816 366 DGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~m~ 385 (396)
.++.+.|+.++|.+++++|+
T Consensus 879 ~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 879 LALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 55555555555555555554
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=3.5e-20 Score=186.25 Aligned_cols=292 Identities=11% Similarity=0.046 Sum_probs=249.0
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 157 (396)
+..+...|++++|+..|+++...++ .+...+..++..+.+.|++++|+++++.+.+.. +.+...|..+..++...|+
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNP--QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc--cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 3446678899999999999988765 477788899999999999999999999998754 4578889999999999999
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041816 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 237 (396)
+++|...++.+.+... .+...+..+..++...|++++|..+|+++.+.. +.+..++..++..+...|++++|..+++.
T Consensus 617 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 617 LNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999988753 367888999999999999999999999998864 45688999999999999999999999999
Q ss_pred HHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
+.... +.+...+..+...+...|++++|.+.|+.+...+ |+..++..+...+.+.|++++|...+.++.+.
T Consensus 695 ~~~~~-------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 695 LQKQH-------PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHhhC-------cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99875 6678889999999999999999999999998875 45578888999999999999999999999876
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
. +.+...+..+...|...|+.++|...|+++.+.. +.+...+..+...+...|+ ++|+.+++++.+
T Consensus 766 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 766 H-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred C-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 4 5578889999999999999999999999998763 4466666666665555555 445555555544
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2e-20 Score=169.81 Aligned_cols=269 Identities=14% Similarity=0.053 Sum_probs=224.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---HHHHHHHHHHHHh
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD---AVAFTSLIKGLCA 189 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 189 (396)
....+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445677899999999999999865 23566888999999999999999999999987643222 3567889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCC----HhhHHHHHHHHhc
Q 041816 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN----TVTYTTIIDGLCK 265 (396)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~ 265 (396)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+. .+. ...+..+...+.+
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG------DSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC------CcchHHHHHHHHHHHHHHHh
Confidence 999999999999998863 45678899999999999999999999999987651 111 2245677888899
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 041816 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 345 (396)
.|++++|.+.|+++.+.... +...+..+...+.+.|++++|..+++++.+.+......++..++.+|.+.|++++|...
T Consensus 193 ~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999876433 56678889999999999999999999999764222346788999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc
Q 041816 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394 (396)
Q Consensus 346 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 394 (396)
++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..
T Consensus 272 l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~ 316 (389)
T PRK11788 272 LRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLR 316 (389)
T ss_pred HHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHH
Confidence 9999885 567777788999999999999999999998875 46654
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=2.1e-18 Score=164.50 Aligned_cols=295 Identities=13% Similarity=0.075 Sum_probs=243.8
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 77 SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
++......|++++|+..|+++....|. +...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|
T Consensus 82 l~~~~l~~g~~~~A~~~l~~~l~~~P~--~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g 158 (656)
T PRK15174 82 WVISPLASSQPDAVLQVVNKLLAVNVC--QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMD 158 (656)
T ss_pred HhhhHhhcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCC
Confidence 345566789999999999999997764 77789999999999999999999999998753 335677888999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 236 (396)
++++|...++.+....+. +...+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|+..++
T Consensus 159 ~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~ 236 (656)
T PRK15174 159 KELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGE 236 (656)
T ss_pred ChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999988776544 33344333 3478899999999999998876433444555666788999999999999999
Q ss_pred HHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHH----HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK----AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
++.... +.+...+..+...+...|++++ |...|++..+.... +...+..+...+...|++++|...++
T Consensus 237 ~al~~~-------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 237 SALARG-------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHhcC-------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999875 5678888999999999999986 89999999887544 67789999999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT-STFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 313 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
++.+.. +.+...+..+..++.+.|++++|...++.+.+. .|+. ..+..+..++...|+.++|.+.|++..+.
T Consensus 309 ~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 309 QSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999864 334567778899999999999999999999875 4444 33444567889999999999999998864
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.2e-17 Score=159.32 Aligned_cols=293 Identities=11% Similarity=0.036 Sum_probs=242.2
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
....|++++|+.+++..+...+. +...+..++.+....|++++|++.++++.+.. +.+...+..+...+...|++++
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 34568999999999999998776 45566667777788999999999999998864 3356778888999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
|...++++.+..+ .+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...++.+..
T Consensus 129 Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 129 VADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 9999999998753 3678888999999999999999999998876642 234444443 347889999999999999877
Q ss_pred cCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 041816 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE----ANCLLIEMMD 316 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~ 316 (396)
.. ..++...+..+..++.+.|++++|...++++...... +...+..+...+...|++++ |...++++.+
T Consensus 206 ~~------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 206 FF------ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred cC------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 64 1234445566678889999999999999999987644 67788889999999999986 8999999987
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 317 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.|+++.+.+
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 53 3356788999999999999999999999999862 3356778888899999999999999999998753
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=3.6e-17 Score=156.40 Aligned_cols=302 Identities=14% Similarity=0.076 Sum_probs=241.8
Q ss_pred HhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041816 73 RCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152 (396)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 152 (396)
..+..|..+...|++++|+..|++.+...+ +...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 345567788899999999999999988654 56789999999999999999999999998864 23567888899999
Q ss_pred HhcCChhhHHHHHHHHHhcCCC--------------------------------CCHHHHHHH-----------------
Q 041816 153 CKMGRVSHGFVVLGRILRSCFT--------------------------------PDAVAFTSL----------------- 183 (396)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~~~l----------------- 183 (396)
...|++++|+..|..+...+.. |........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 9999999998766544322100 000000000
Q ss_pred ----------HHHH------HhcCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 041816 184 ----------IKGL------CAESRIMEAAALFTKLKAFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245 (396)
Q Consensus 184 ----------~~~~------~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 245 (396)
+..+ ...+++++|.+.|++..+.+ .+.....|..+...+...|++++|+..+++.....
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--- 361 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--- 361 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence 0000 11257889999999998764 23345678888899999999999999999998865
Q ss_pred cccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 041816 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325 (396)
Q Consensus 246 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 325 (396)
+.....|..+...+...|++++|...|++..+.... +...|..+...+...|++++|...|++.++.. +.+...
T Consensus 362 ----P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~ 435 (615)
T TIGR00990 362 ----PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFS 435 (615)
T ss_pred ----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHH
Confidence 445678899999999999999999999999887543 67889999999999999999999999999864 335677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 326 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
+..+..++.+.|++++|+..|++..+. .+.+...++.+...+...|++++|.+.|++..+..
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 888899999999999999999999875 34468899999999999999999999999988753
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=3.8e-16 Score=149.38 Aligned_cols=296 Identities=13% Similarity=0.022 Sum_probs=184.2
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh-----------------------
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS----------------------- 135 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------------- 135 (396)
..+...|++++|+..++..++..+ .+...|..+..++...|++++|+..|.....
T Consensus 168 ~~~~~l~~~~~Ai~~~~~al~l~p--~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 245 (615)
T TIGR00990 168 ACHNALGDWEKVVEDTTAALELDP--DYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAES 245 (615)
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 456677899999999999988765 4777888888888888888888654432211
Q ss_pred -----------------------------------------------------------------------------CC-
Q 041816 136 -----------------------------------------------------------------------------TG- 137 (396)
Q Consensus 136 -----------------------------------------------------------------------------~~- 137 (396)
.+
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~ 325 (615)
T TIGR00990 246 KAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK 325 (615)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence 00
Q ss_pred CCC-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHH
Q 041816 138 LFP-DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216 (396)
Q Consensus 138 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 216 (396)
..| +...|..+...+...|++++|+..+++.++..+. ....|..+...+...|++++|...|++..+.. +.+..+|.
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 403 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYY 403 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 001 1122334444445556666666666666554321 34455566666666666666666666665543 33456666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041816 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 296 (396)
.+...+...|++++|...|++..... +.+...+..+..++.+.|++++|+..|++..+.... +...|+.+..
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~-------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~ 475 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLD-------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGE 475 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 66666666777777777777666653 345556666666777777777777777776654322 4566677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHh------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041816 297 GFCYANDWNEANCLLIEMMDQGVQPDVV------TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370 (396)
Q Consensus 297 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 370 (396)
.+...|++++|...|++..+.....+.. .++.....+...|++++|.+++++..... +.+...+..+...+..
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~ 554 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQ 554 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 7777777777777777766542111110 11112222334577777777777776642 2344567777888888
Q ss_pred cCCHHHHHHHHHHHHhC
Q 041816 371 TGRVNHAKELFVSMESM 387 (396)
Q Consensus 371 ~g~~~~A~~~~~~m~~~ 387 (396)
.|++++|.++|++..+.
T Consensus 555 ~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 555 QGDVDEALKLFERAAEL 571 (615)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 88888888888877653
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.79 E-value=3.9e-17 Score=144.11 Aligned_cols=291 Identities=14% Similarity=0.108 Sum_probs=227.1
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a 161 (396)
..|+.++|...+.+.++..+ .-...|..|...+-.+|+...|++.|++....+ |+ ...|..|...|.+.+.+++|
T Consensus 196 a~Grl~ea~~cYlkAi~~qp--~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQP--CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred hhcccchhHHHHHHHHhhCC--ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHH
Confidence 34556666666666655443 245567777777777788888888888777643 43 45677788888888888888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
...|.+.....+ -...++..+...|...|.+|.|+..|++..+.. +.-...|+.|..++-..|+..+|.+.|.+....
T Consensus 272 vs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 272 VSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 888887776542 256667777777888899999999999888763 223678999999999999999999999998886
Q ss_pred CCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 041816 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 321 (396)
. +.-..+.+.|..+|...|.+++|..+|....+-... -....+.|...|-+.|++++|+..+++.++ +.|
T Consensus 350 ~-------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P 419 (966)
T KOG4626|consen 350 C-------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKP 419 (966)
T ss_pred C-------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCc
Confidence 4 455678889999999999999999999988775433 355788899999999999999999999887 567
Q ss_pred CH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 041816 322 DV-VTFNVIMDELCKNGKMDEASRLLELMILRGVNPN-TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393 (396)
Q Consensus 322 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 393 (396)
+. ..|+.+...|-..|+++.|.+.+.+.+.. .|. ....+.|...|-..|+..+|+.-|++..+ ++||.
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 74 58889999999999999999999988874 554 46788899999999999999999999876 55664
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.79 E-value=5.2e-17 Score=143.32 Aligned_cols=291 Identities=16% Similarity=0.136 Sum_probs=164.1
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH-HHHHHHHhc
Q 041816 77 SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN-ILINCFCKM 155 (396)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~li~~~~~~ 155 (396)
.++.+-..|++++|+..++.+++..+. .+..|..+..++...|+.+.|.+.|.+..+.+ |+..... .+....-..
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~p~--fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELKPK--FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcCch--hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhh
Confidence 344455678899999999999887654 78889999999999999999999998888743 5554332 234444456
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCChHHHHHH
Q 041816 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN-VITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
|++++|...|.+.++.... =...|..|...+...|+.-.|++.|++..+.. |+ ...|-.|...|...+.++.|+..
T Consensus 198 Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred cccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHH
Confidence 7777777777777665322 24556667777777777777777777766652 32 45566666666666666666666
Q ss_pred HHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
|.+..... +...+++..|...|...|+.+.|+..|++..+.... -...|+.|..++-..|+..+|.+.+.+.
T Consensus 275 Y~rAl~lr-------pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 275 YLRALNLR-------PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHhcC-------CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 65555443 223344444444445555555555555554443222 2334455555555555555555555444
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN-TSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 315 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
.... .--....+.|...|...|.+++|..+|....+- .|. ....+.|...|-++|++++|+..|++.+
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 4421 111233344444444444444444444444431 221 2233444444444444444444444443
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=2.5e-15 Score=153.00 Aligned_cols=306 Identities=13% Similarity=0.042 Sum_probs=221.0
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH-----------
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL----------- 148 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l----------- 148 (396)
.+...|++++|+..|++++...+. +...+..+..++...|++++|++.|+++.+... .+...+..+
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNT--DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHH
Confidence 345778999999999999997654 677888899999999999999999999987542 223333222
Q ss_pred -------------------------------HHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041816 149 -------------------------------INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197 (396)
Q Consensus 149 -------------------------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 197 (396)
...+...|++++|++.+++.++..+. +...+..+...|.+.|++++|+
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 23344678889999999988887543 6777788888999999999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc-------------------------------
Q 041816 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG------------------------------- 246 (396)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------------------------------- 246 (396)
..++++.+.. +.+...+..+...+...++.++|+..++.+........
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999887653 22444443333344445555555554443211000000
Q ss_pred --ccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 041816 247 --VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324 (396)
Q Consensus 247 --~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 324 (396)
...+.+...+..+...+.+.|++++|++.|++..+.... +...+..++..+...|++++|...++.+.+.. +.+..
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~ 672 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLN 672 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChH
Confidence 002445566778888899999999999999999887544 67888999999999999999999999887642 23455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC
Q 041816 325 TFNVIMDELCKNGKMDEASRLLELMILRGV--NP---NTSTFSTLMDGFCLTGRVNHAKELFVSMES-MGCKHT 392 (396)
Q Consensus 325 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~ 392 (396)
.+..+..++...|++++|.++++.+..... +| +...+..+...+...|+.++|.+.|++... .|+.|+
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 667788888899999999999999887521 12 234566677888899999999999988753 555543
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=1.5e-15 Score=154.59 Aligned_cols=194 Identities=11% Similarity=0.049 Sum_probs=151.1
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHhH-----------
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYTY----------- 145 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~----------- 145 (396)
+..+...|++++|+..|++.++..|. +...+..+..++.+.|++++|+..|++..+..... +...|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK--DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 44566789999999999999987654 78889999999999999999999999998754221 11112
Q ss_pred -HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH------
Q 041816 146 -NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL------ 218 (396)
Q Consensus 146 -~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l------ 218 (396)
......+.+.|++++|+..|+++++..+ .+...+..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 1224457789999999999999998754 367788889999999999999999999988763 2233333222
Q ss_pred ------------------------------------HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHH
Q 041816 219 ------------------------------------INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262 (396)
Q Consensus 219 ------------------------------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 262 (396)
...+...|++++|++.+++..+.. +.+...+..+...
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-------P~~~~~~~~LA~~ 504 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-------PGSVWLTYRLAQD 504 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 334556789999999999988865 4567778888899
Q ss_pred HhccCCHHHHHHHHHHHhhC
Q 041816 263 LCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~~ 282 (396)
|.+.|++++|...++++.+.
T Consensus 505 ~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999988764
No 19
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=2.8e-14 Score=128.65 Aligned_cols=285 Identities=8% Similarity=0.011 Sum_probs=223.2
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH--HHHHHHHhcCChhh
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN--ILINCFCKMGRVSH 160 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~ 160 (396)
..|+++.|.+......+.... ....|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~--p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQ--PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 468999999888876554322 2233433455557899999999999999874 35554333 34667889999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH-------HHHHHHHHHHHhcCChHHHHH
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV-------ITYSTLINGLCRTGHTIVALN 233 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~ 233 (396)
|...++.+.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999988744 7888999999999999999999999999988654322 133344444445556677777
Q ss_pred HHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (396)
+++.+... .+.+......+...+...|+.++|.+++++..+. .|+.. -.++.+....++.+++.+..+.
T Consensus 251 ~w~~lp~~-------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 251 WWKNQSRK-------TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHhCCHH-------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHH
Confidence 77776554 3568889999999999999999999999999875 33442 2234444566999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 314 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
..+.. +-|...+..+...|.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 320 ~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98763 345667889999999999999999999999984 79999999999999999999999999998754
No 20
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=2.2e-14 Score=117.41 Aligned_cols=294 Identities=16% Similarity=0.142 Sum_probs=236.7
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH------HhHHHHHHHH
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL------YTYNILINCF 152 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~li~~~ 152 (396)
.+++-.+++++|+++|-.|.+.++. +..+.-+|.+.+.+.|..|.|+.+...+.+. ||. .....|.+-|
T Consensus 43 lNfLLs~Q~dKAvdlF~e~l~~d~~--t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 43 LNFLLSNQPDKAVDLFLEMLQEDPE--TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHHHhhcCcchHHHHHHHHHhcCch--hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHH
Confidence 3445567899999999999996654 7788888999999999999999999999874 442 2345567778
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCCh
Q 041816 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN----VITYSTLINGLCRTGHT 228 (396)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~ 228 (396)
...|-++.|+.+|..+.+.+ ..-......|+..|-...+|++|+.+-+++.+.|..+. ...|.-+...+....+.
T Consensus 118 m~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 89999999999999998865 33567788999999999999999999999998864443 23466677777778899
Q ss_pred HHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 041816 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308 (396)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 308 (396)
+.|..++++..+.+ +..+..--.+...+...|++..|.+.++...+.+..--..+...|..+|.+.|+.++..
T Consensus 197 d~A~~~l~kAlqa~-------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 197 DRARELLKKALQAD-------KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred HHHHHHHHHHHhhC-------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999876 45556666777889999999999999999999877666778899999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHH
Q 041816 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC---LTGRVNHAKELFVSME 385 (396)
Q Consensus 309 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---~~g~~~~A~~~~~~m~ 385 (396)
..+..+.+.. ++...-..+.+.-....-.+.|...+.+-+.+ +|+...+..+|+.-. ..|...+.+.++++|.
T Consensus 270 ~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 270 NFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 9999999864 33444445555555566677788777776665 899999999998764 3467888888999987
Q ss_pred hCCC
Q 041816 386 SMGC 389 (396)
Q Consensus 386 ~~g~ 389 (396)
...+
T Consensus 346 ge~l 349 (389)
T COG2956 346 GEQL 349 (389)
T ss_pred HHHH
Confidence 6544
No 21
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.74 E-value=5.8e-14 Score=127.34 Aligned_cols=296 Identities=8% Similarity=-0.034 Sum_probs=216.7
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCCh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL--YTYNILINCFCKMGRV 158 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~ 158 (396)
....|+++.|.+.+....+..+. ....+-....+..+.|+++.|.+.+.+..+.. |+. .........+...|++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~--~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAE--PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 44678999999999998776543 34445556777888899999999999987643 444 3344457888899999
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH---HhcCChHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL---CRTGHTIVALNLF 235 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~---~~~g~~~~a~~~~ 235 (396)
+.|.+.++.+.+..+. +..++..+...+...|++++|.+++..+.+.+..........-..++ ...+..+.+.+.+
T Consensus 170 ~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 170 HAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999998744 77889999999999999999999999999987543332211111222 2233333333444
Q ss_pred HHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT-YNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
..+...... ..+.+...+..+...+...|+.++|.+++++..+......... ...........++.+.+.+.++..
T Consensus 249 ~~~~~~~p~---~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 249 LNWWKNQPR---HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHCCH---HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 444443200 0124788999999999999999999999999998644322111 122222234457888899999888
Q ss_pred HHCCCCCC-H--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 315 MDQGVQPD-V--VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 315 ~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
.+. .|+ . ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++-..
T Consensus 326 lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 765 344 3 556788999999999999999999544433588999999999999999999999999998643
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=4e-17 Score=140.77 Aligned_cols=259 Identities=16% Similarity=0.127 Sum_probs=82.5
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
..+...|++++|+++++........+.++..|..+.......++++.|++.++++...+.. +...+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 3445566677777777544333312245555666666666666777777777776655422 44445555555 566667
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTGHTIVALNLFEE 237 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 237 (396)
++|.+++....+.. ++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.+++
T Consensus 94 ~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77766666555432 344555666666666677777777766655432 234555666666666677777777777777
Q ss_pred HHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
..+.. |.|....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.++++..+.
T Consensus 172 al~~~-------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 172 ALELD-------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHH--------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHcC-------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 66653 3345666666666666676666666666665543 234555666666666666666666666666653
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
. +.|......+.+++...|+.++|.++..++.
T Consensus 244 ~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 244 N-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp S-TT-HHHHHHHHHHHT----------------
T ss_pred c-ccccccccccccccccccccccccccccccc
Confidence 2 3355566666666666666666666665543
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.73 E-value=2.8e-17 Score=141.67 Aligned_cols=263 Identities=16% Similarity=0.125 Sum_probs=116.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041816 112 LLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190 (396)
Q Consensus 112 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (396)
.+...+.+.|++++|++++++..... .+.|...|..+...+...++++.|.+.++++.+.+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45778889999999999997654433 2335555666777778899999999999999987644 66677777777 789
Q ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHH
Q 041816 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270 (396)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (396)
+++++|.+++++.-+. .++...+..++..+...++++++.++++.+..... .+.+...|..+...+.+.|+.+
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-----APDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T--------T-HHHHHHHHHHHHHCCHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999877654 35667788899999999999999999999876432 3567888999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 271 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
+|.+.+++..+..+. |....+.++..+...|+.+++..++....+.. +.|...+..+..+|...|+.++|...|++..
T Consensus 164 ~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 164 KALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 999999999987544 67888999999999999999999998887653 4566778899999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 351 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
+. .+.|+.....+.+++...|+.++|.++.++..+
T Consensus 242 ~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 242 KL-NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HH-STT-HHHHHHHHHHHT-----------------
T ss_pred cc-ccccccccccccccccccccccccccccccccc
Confidence 85 355888999999999999999999999887654
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.71 E-value=2.4e-13 Score=132.77 Aligned_cols=294 Identities=12% Similarity=0.074 Sum_probs=141.9
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
+...|++++|+.+|++.+...| .+...+..++.++...|++++|+..++++.+.. +.+.. +..+..++...|+.++
T Consensus 59 ~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~ 134 (765)
T PRK10049 59 YRNLKQWQNSLTLWQKALSLEP--QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWD 134 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHH
Confidence 4445566666666666655433 244555555566666666666666666665542 22333 5555556666666666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-----------------------------------------
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL----------------------------------------- 199 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----------------------------------------- 199 (396)
|+..++++.+..+. +...+..+...+...|..++|++.
T Consensus 135 Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad 213 (765)
T PRK10049 135 ELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIAD 213 (765)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHH
Confidence 66666666655432 333333444444444443333322
Q ss_pred -----HHHHHhc-CCCccHH-HH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 200 -----FTKLKAF-GCKPNVI-TY----STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 200 -----~~~~~~~-g~~~~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+. ..|+. .-..+..+|...|+
T Consensus 214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~-----~~P~~-a~~~la~~yl~~g~ 287 (765)
T PRK10049 214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQ-----IIPPW-AQRWVASAYLKLHQ 287 (765)
T ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC-----CCCHH-HHHHHHHHHHhcCC
Confidence 2222211 0011110 00 0012233445566666666666655431 00111 11123445566666
Q ss_pred HHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HhhHHHHHH
Q 041816 269 VDKAKELFLQMKDKNINP---DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV-----------QPD---VVTFNVIMD 331 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~l~~ 331 (396)
+++|+.+|+++....... ....+..+..++...|++++|..+++.+.+... .|+ ...+..+..
T Consensus 288 ~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~ 367 (765)
T PRK10049 288 PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQ 367 (765)
T ss_pred cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHH
Confidence 666666666654432110 012334444455566666666666665554310 112 112334445
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 332 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
.+...|+.++|+++++++... .+.+...+..+...+...|++++|++.+++..+
T Consensus 368 ~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 368 VAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 555556666666666665554 233455555555555555666666666655554
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.69 E-value=3e-13 Score=132.03 Aligned_cols=299 Identities=11% Similarity=-0.014 Sum_probs=218.9
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
..+...|++++|+..++++++..|. +.. +..+..++...|++++|+..++++.+... -+...+..+..++...|..
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~--~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPD--KAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC--CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCh
Confidence 4466789999999999999987654 666 88889999999999999999999988642 2444555566666555555
Q ss_pred hhHH----------------------------------------------HHHHHHHhc-CCCCCHH-HH----HHHHHH
Q 041816 159 SHGF----------------------------------------------VVLGRILRS-CFTPDAV-AF----TSLIKG 186 (396)
Q Consensus 159 ~~a~----------------------------------------------~~~~~~~~~-~~~~~~~-~~----~~l~~~ 186 (396)
+.|+ +.++.+.+. ...|+.. .+ ...+..
T Consensus 167 e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 167 APALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 5444 334444432 1112211 11 111334
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 187 LCAESRIMEAAALFTKLKAFGCK-PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
+...|++++|+..|+++.+.+.+ |+. ....+...|...|++++|+..|+++....... ..........+..++..
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~---~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETI---ADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC---CCCChHHHHHHHHHHHh
Confidence 56779999999999999987632 222 22335778999999999999999987654100 00113456667778899
Q ss_pred cCCHHHHHHHHHHHhhCCC-----------CCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041816 266 EGFVDKAKELFLQMKDKNI-----------NPD---VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 331 (396)
.|++++|.++++.+..... .|+ ...+..+...+...|++++|+.+++++.... +-+...+..+..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 9999999999999987532 123 2245667788899999999999999998763 455778899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 332 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.+...|++++|++.+++..+.. +.+...+..+...+...|++++|..+++++++.
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999852 334677778888899999999999999999874
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.69 E-value=2.9e-13 Score=132.88 Aligned_cols=285 Identities=11% Similarity=-0.006 Sum_probs=219.5
Q ss_pred ChhHHHHHHHHHHhcCCC-CC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 86 TPNEAFCIFDYMLNMRPS-PP--PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
+..++...++.....-+. |+ +...|..+..++.. +++++|+..+.+..... |+......+...+...|++++|.
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHH
Confidence 344444344444333322 35 67788888888887 88999999888877653 66554444555567899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
..++++... +|+...+..+...+.+.|++++|...+++..+.. +.+...+..+.......|++++|...+++..+..
T Consensus 530 ~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~ 606 (987)
T PRK09782 530 AAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA 606 (987)
T ss_pred HHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 999998665 3444556677888899999999999999998875 3334444444455556799999999999999854
Q ss_pred CCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 041816 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 322 (396)
|+...|..+..++.+.|++++|+..|++.....+. +...++.+..++...|++++|+..+++..+.. +-+
T Consensus 607 --------P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~ 676 (987)
T PRK09782 607 --------PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDD 676 (987)
T ss_pred --------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 67889999999999999999999999999987654 67788888899999999999999999998853 345
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT-STFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
...+..+..++...|++++|+..+++..+. .|+. .+.........+..+++.|.+-+++-...+
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 678899999999999999999999999985 4543 555566667777778888888777766543
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=8.1e-13 Score=129.77 Aligned_cols=292 Identities=11% Similarity=0.008 Sum_probs=221.1
Q ss_pred ccccCChhHHHHHHHHHHhc-CCCCCCHhhHHHHHHHHHhcCC---hhHHHHH----------------------HHHHH
Q 041816 81 DITAITPNEAFCIFDYMLNM-RPSPPPLTSFNLLFGCLAKTKH---YDTVLSL----------------------FKRLN 134 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~~~ 134 (396)
.+..|+.++|.++|+..... +....+....+-++..|...+. ..+++.+ ++...
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 45678899999999988763 2222344455567777777655 3333222 22221
Q ss_pred hC-CC-CC--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 041816 135 ST-GL-FP--DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210 (396)
Q Consensus 135 ~~-~~-~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 210 (396)
.. +. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++... +|
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 11 11 23 56677778877776 88889999888887764 45544444555667899999999999998665 45
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhh
Q 041816 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290 (396)
Q Consensus 211 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 290 (396)
+...+..+...+.+.|+.++|...+++..... +.+...+..+.......|++++|...+++..+.. |+...
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-------P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a 611 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-------LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANA 611 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHH
Confidence 55567777888999999999999999998764 3344444445555566799999999999998764 56888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041816 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370 (396)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 370 (396)
|..+..++.+.|++++|...+++..... +.+...+..+..++...|+.++|+..+++..+. .+-+...+..+..++..
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999864 335667888888999999999999999999986 34477889999999999
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 041816 371 TGRVNHAKELFVSMESMG 388 (396)
Q Consensus 371 ~g~~~~A~~~~~~m~~~g 388 (396)
.|++++|...|++..+..
T Consensus 690 lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 690 LDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999998743
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=2.3e-13 Score=115.55 Aligned_cols=279 Identities=14% Similarity=0.149 Sum_probs=183.8
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHH
Q 041816 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183 (396)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (396)
|.+..++..+|.++++.-..+.|.+++++......+.+..+||.+|.+-.- ....+++.+|......||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence 457789999999999999999999999999888778999999999977543 2337899999999999999999999
Q ss_pred HHHHHhcCCHHHH----HHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHH-HHHHHHHHHhc--CCCCcccccCCHhhH
Q 041816 184 IKGLCAESRIMEA----AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV-ALNLFEEMANG--NGKFGVVCKPNTVTY 256 (396)
Q Consensus 184 ~~~~~~~g~~~~a----~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~--~~~~~~~~~~~~~~~ 256 (396)
+.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++... |..+....+.|..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 9999999988764 5788899999999999999999999999988854 44444444332 222222233455566
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHh------------------------------------------hCCCCCChhhHHHH
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMK------------------------------------------DKNINPDVVTYNSL 294 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~------------------------------------------~~~~~p~~~~~~~l 294 (396)
...+..|....+.+-|.++-.-+. -.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 666777777767666666644433 22223344444455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CH--------HH-----HHHHH-------HHHHhCC
Q 041816 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG-KM--------DE-----ASRLL-------ELMILRG 353 (396)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~--------~~-----A~~~~-------~~m~~~g 353 (396)
+++....|.++-.-++|..++..|-..+...-.-++..+++.. .. .. |..++ .+|. .
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r--~ 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR--A 517 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH--h
Confidence 5555555555555555555555443222222222222222221 00 00 00000 1111 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 354 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
........+.+.-.+.+.|+.++|.++|..+.+.+
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 23344555666667778888888888888886544
No 29
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=2.4e-12 Score=108.72 Aligned_cols=295 Identities=11% Similarity=0.045 Sum_probs=240.5
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
...|++.+|.++..+..+.+.. ....|..-+.+.-+.|+.+.+-.++.+.-+..-.++...+-...+.....|+++.|
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~--p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQ--PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 3568999999999998776654 45566666777788999999999999998753345666777788889999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH-------HHHHHHHHHHHhcCChHHHHHH
Q 041816 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV-------ITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
..-++++.+.+.. +........++|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...
T Consensus 173 ~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 173 RENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 9999999988754 7888999999999999999999999999999866554 4677777777777777777778
Q ss_pred HHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
|+..... .+.++..-.+++.-+.++|+.++|.++.++..+.+..|. . ...-.+.+-++.+.-++..++-
T Consensus 252 W~~~pr~-------lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 252 WKNQPRK-------LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred HHhccHH-------hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHH
Confidence 8877665 356777888899999999999999999999998877665 2 2223456778888888887776
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 041816 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393 (396)
Q Consensus 315 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 393 (396)
.+. .+-++..+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.++.++-...-..|+.
T Consensus 321 l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 321 LKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred HHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 654 233447888999999999999999999998887 4899999999999999999999999999987754444443
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=7.2e-14 Score=124.94 Aligned_cols=291 Identities=13% Similarity=0.039 Sum_probs=228.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhH
Q 041816 84 AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL--FPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a 161 (396)
.-+..+|+..|..+..... .+..+...+..+|...+++++|.++|+.+.+... .-+..+|.+.+..+-+ +-+
T Consensus 332 ~y~~~~A~~~~~klp~h~~--nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~ 405 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHY--NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVA 405 (638)
T ss_pred HHHHHHHHHHHHhhHHhcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHH
Confidence 3457899999999555433 3446677788999999999999999999976431 1366778877765533 222
Q ss_pred HHHHH-HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 162 FVVLG-RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 162 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
+..+. .+.+.. +-.+.+|-++..+|.-.++.+.|++.|++..+.. +....+|+.+..-+....++|.|...|+....
T Consensus 406 Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 406 LSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 33332 333332 3478899999999999999999999999999874 33788999999999999999999999999876
Q ss_pred cCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 041816 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (396)
.. +.+..+|--|.-.|.+.++++.|+-.|+...+.++. +.+....+...+-+.|+.++|+.+++++.....
T Consensus 484 ~~-------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~- 554 (638)
T KOG1126|consen 484 VD-------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP- 554 (638)
T ss_pred CC-------chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-
Confidence 54 344556667788999999999999999999987765 777888888889999999999999999987642
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041816 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392 (396)
Q Consensus 321 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 392 (396)
-|...--.-+..+...++.++|+..++++++. ++-+...+..+...|.+.|+.+.|+.-|--+.+...++.
T Consensus 555 kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 555 KNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred CCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 24444444566677889999999999999986 444667788888999999999999999988887665543
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.65 E-value=1.8e-12 Score=124.80 Aligned_cols=292 Identities=11% Similarity=0.028 Sum_probs=174.2
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
+.|+++.|++.|+++.+..|.. ....+ .++..+...|+.++|+..+++.... ..........+...+...|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~-~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQ-SGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccc-hhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4456666666666666654431 11222 5555555566666666666665521 0112222222344555666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
++|+++.+..+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 123 ely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 666666665433 3455555566666666666666666666554 3344444333333333444444666666666553
Q ss_pred CCCcccccCCHhhHHHHHHHHhccCCHHH------------------------------------------------HHH
Q 041816 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDK------------------------------------------------AKE 274 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~------------------------------------------------a~~ 274 (396)
|.+...+..++.+..+.|-... |+.
T Consensus 200 -------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 200 -------PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred -------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 2333444444444333333322 333
Q ss_pred HHHHHhhC-CCCCChhh-----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 275 LFLQMKDK-NINPDVVT-----YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 275 ~~~~m~~~-~~~p~~~~-----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
-++.+... +..|.... ..-.+-++...+++.++++.++.+...+.+....+-..+.++|...+.+++|..+++.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 33333321 11132211 1234456778899999999999999888665566888999999999999999999999
Q ss_pred HHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 349 MILRG-----VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 349 m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
+.... ..++......|.-+|...+++++|..+++++.+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 97642 2334555678899999999999999999999873
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.62 E-value=8.4e-12 Score=120.31 Aligned_cols=138 Identities=12% Similarity=0.031 Sum_probs=68.5
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
..|+.++|+.++++.. .+.+........+...+...|++++|+++|+++.+... -+...+..++..+.+.++.++|+
T Consensus 80 ~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl 156 (822)
T PRK14574 80 WAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVL 156 (822)
T ss_pred HcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHH
Confidence 3466666666666665 22212222233334455566666666666666665432 23444555555666666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 226 (396)
+.++++.+.. |+...+..++..+...++..+|++.++++.+.. +-+...+..+..++.+.|
T Consensus 157 ~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 157 KQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 6666665542 333333333333333444444666666665543 223333333444443333
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=4.7e-12 Score=114.31 Aligned_cols=254 Identities=10% Similarity=0.065 Sum_probs=201.7
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
...|+++.|.+.+.++.+..+. +.....-.....+...|++++|++.++++.+.. +-+...+..+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~-~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADN-DQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHH
Confidence 4678999999999999875543 222222233677888999999999999998876 33677888999999999999999
Q ss_pred HHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 041816 162 FVVLGRILRSCFTPDA-------VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|.++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999987654322 23334444444555667777777776543 245788889999999999999999999
Q ss_pred HHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
+++..+. +++... .++.+....++.+++.+..+...+.... |...+..+...|.+.+++++|.+.|+.+
T Consensus 286 L~~~l~~--------~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 286 ILDGLKR--------QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHHHhc--------CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9998874 345422 2344445669999999999999987654 7778899999999999999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 315 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 355 l~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 355 LKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred Hhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 985 69999999999999999999999999997754
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=1.4e-11 Score=114.00 Aligned_cols=294 Identities=13% Similarity=0.084 Sum_probs=213.5
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
...|+.++|..++.++++..+. ....|..|..+|-+.|+.++++..+-.+...+ +-|...|..+.....+.|++++|
T Consensus 150 farg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 3448999999999999998764 88899999999999999999999887765544 44778899999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHH----HHHHHHHHHHhcCChHHHHHHHHH
Q 041816 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI----TYSTLINGLCRTGHTIVALNLFEE 237 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~ 237 (396)
.-+|.+.++..+ ++...+---+..|-+.|+...|...|.++.....+.|.. .-..+++.+...++.+.|.+.++.
T Consensus 227 ~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999864 466666677889999999999999999998874322222 223346667778888999998888
Q ss_pred HHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC---------------------------C----
Q 041816 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN---------------------------P---- 286 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---------------------------p---- 286 (396)
...... -..+...++.++..+.+...++.|......+...... +
T Consensus 306 ~~s~~~-----~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 306 ALSKEK-----DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHhhcc-----ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 776331 2345567778888888888888888777666541100 1
Q ss_pred --------------------------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 041816 287 --------------------------------DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334 (396)
Q Consensus 287 --------------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 334 (396)
+...|.-+..++.+.|++.+|+.++..+......-+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 122245555666667777777777777766544444556677777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 335 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
..|..++|.+.|+..+.. -+.+...-..|...+.+.|+.++|.+.+..|.
T Consensus 461 ~l~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 777777777777777664 22344455555666667777777777776654
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=6.1e-12 Score=107.11 Aligned_cols=298 Identities=16% Similarity=0.197 Sum_probs=221.3
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHH--HHhcCCh-hHHHHHHHHHHhCC-------------------C
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGC--LAKTKHY-DTVLSLFKRLNSTG-------------------L 138 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~-~~a~~~~~~~~~~~-------------------~ 138 (396)
++..+...++.-+++.|...+.. .+...-..|+.. |....+. -.-++-|-.|...| .
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~-vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~ 203 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVD-VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETL 203 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhc
Confidence 45567788888899999887654 444443333332 1111111 11111222222111 2
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH
Q 041816 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218 (396)
Q Consensus 139 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 218 (396)
+....+|.++|.+.|+--..+.|.+++++......+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 3456789999999999999999999999998887788999999998765432 337889999999999999999999
Q ss_pred HHHHHhcCChHH----HHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHH-HHHHHHHHHhh----CCCCC---
Q 041816 219 INGLCRTGHTIV----ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD-KAKELFLQMKD----KNINP--- 286 (396)
Q Consensus 219 l~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~----~~~~p--- 286 (396)
+++..+.|+++. |.+++.+|++.| +.|...+|..+|..+.+.++.. .|..++.++.. +.++|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiG------VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIG------VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhC------CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999998764 567888999999 8999999999999999888774 34455555432 22222
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041816 287 -DVVTYNSLIHGFCYANDWNEANCLLIEMMDQ----GVQPDV---VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358 (396)
Q Consensus 287 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 358 (396)
|...|...+..|....+.+-|.++..-+... -+.|+. .-|..+....+.....+.....|+.|+-+-+-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 4456777888888999999998887766532 133332 34677788888889999999999999988788899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041816 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGC 389 (396)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 389 (396)
.+...++++..-.|.++-.-++|.+|+..|.
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 9999999999999999999999999998873
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=6.8e-12 Score=113.89 Aligned_cols=260 Identities=9% Similarity=-0.063 Sum_probs=191.2
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
....|+++.|.+.+....+..+. +.....-.....+...|+++.|++.++.+.+.. +-+...+..+...+.+.|++++
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~p~-~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELAGN-DNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCc-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHH
Confidence 34568999999999998876544 233334445778888999999999999999876 3366788899999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHhcCChHHHHHH
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGL---CAESRIMEAAALFTKLKAFGC---KPNVITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~g~---~~~~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
|.+.+..+.+.+..+.......-...+ ...+..+++...+..+.+... +.+...+..+...+...|+.++|.++
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~ 285 (409)
T TIGR00540 206 LDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEI 285 (409)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999987543332211111222 222333333334444444321 13788899999999999999999999
Q ss_pred HHHHHhcCCCCcccccCCHhh---HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHHhcCCHHHHHH
Q 041816 235 FEEMANGNGKFGVVCKPNTVT---YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV--VTYNSLIHGFCYANDWNEANC 309 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~ 309 (396)
+++..+.. ||... ...........++.+.+.+.++...+.... |. ....++...+.+.|++++|.+
T Consensus 286 l~~~l~~~--------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~ 356 (409)
T TIGR00540 286 IFDGLKKL--------GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAAD 356 (409)
T ss_pred HHHHHhhC--------CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHH
Confidence 99999864 33331 122223334467889999999888876433 44 567789999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 310 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 357 ~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 357 AFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999644444579999899999999999999999999998653
No 37
>PRK12370 invasion protein regulator; Provisional
Probab=99.58 E-value=7.4e-12 Score=117.97 Aligned_cols=266 Identities=13% Similarity=0.077 Sum_probs=188.8
Q ss_pred CCHhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHh---------cCChhhHHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAK-----TKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCK---------MGRVSHGFVVLGRIL 169 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~a~~~~~~~~ 169 (396)
.+...|...+.+... .+++++|+++|++..+.. |+ ...|..+..++.. .+++++|...+++.+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455556666665322 234678999999998754 43 4455555554432 244789999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccc
Q 041816 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249 (396)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 249 (396)
+..+. +...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+..
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~------- 402 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD------- 402 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence 88644 78888888889999999999999999999875 4457788889999999999999999999998875
Q ss_pred cCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHH
Q 041816 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-VVTFNV 328 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ 328 (396)
+.+...+..++..+...|++++|...+++......+-+...+..+..++...|++++|...+.++... .|+ ....+.
T Consensus 403 P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~ 480 (553)
T PRK12370 403 PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNL 480 (553)
T ss_pred CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHH
Confidence 23333444455566778999999999999876542224556777888888999999999999887654 344 334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 329 IMDELCKNGKMDEASRLLELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 329 l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
+...|...| ++|...++.+.+. .-.+....+ +-..|.-.|+.+.+..+ +++.+.|
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 566677777 4788877777653 112222222 33455667777777766 8887655
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=7.9e-12 Score=107.40 Aligned_cols=164 Identities=15% Similarity=0.073 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHH
Q 041816 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292 (396)
Q Consensus 213 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 292 (396)
.|...+.+-|.-.++.++|...|+...+.+ +.....|+.+..-|....+...|++-++...+-+.. |-..|.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-------p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWY 402 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-------PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWY 402 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC-------cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHh
Confidence 344555666778889999999999999976 556789999999999999999999999999987655 899999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 041816 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372 (396)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 372 (396)
.|.++|.-.+...=|+-.|++..... +-|...|.+|.++|.+.++.++|++.|......|- .+...+..|...|-+.+
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELK 480 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHH
Confidence 99999999999999999999998753 45788999999999999999999999999998753 36688999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 041816 373 RVNHAKELFVSMES 386 (396)
Q Consensus 373 ~~~~A~~~~~~m~~ 386 (396)
+.++|...|++-++
T Consensus 481 d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999988765
No 39
>PRK12370 invasion protein regulator; Provisional
Probab=99.55 E-value=6.7e-12 Score=118.26 Aligned_cols=250 Identities=12% Similarity=0.049 Sum_probs=184.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK---------TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
+.++|++.|++.++..|. +...|..+..++.. .+++++|...+++..+.+ +-+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 467999999999987664 66777777665542 345889999999998875 336778888888899999
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 236 (396)
++++|...+++.++.++. +...+..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999998643 6778888999999999999999999999987522 33334445556777899999999999
Q ss_pred HHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
++.... .+.+...+..+..++...|++++|...++++...... +....+.+...|+..| ++|...++.+.+
T Consensus 431 ~~l~~~------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQH------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHhc------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 987653 1234556778888999999999999999997665322 3445566666777777 478887777664
Q ss_pred C-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 317 Q-GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 317 ~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
. ...+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 502 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 502 SEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 3 122222223 34445556776666665 777765
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1e-12 Score=117.69 Aligned_cols=260 Identities=17% Similarity=0.085 Sum_probs=210.6
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCC-CCHhhHHHHHHHHHhcCChhHHHHHH-HHHHhCCCCCCHHhHHHHHHHHH
Q 041816 76 SSGQGDITAITPNEAFCIFDYMLNMRPSP-PPLTSFNLLFGCLAKTKHYDTVLSLF-KRLNSTGLFPDLYTYNILINCFC 153 (396)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~ 153 (396)
.+|.+++..+++++|..+|+.+.+..+.. .+.+.|.+.+--+-+. -++..+ +.+.... +-.+.+|..+.++|.
T Consensus 358 q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~Laq~Li~~~-~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 358 QLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLAQDLIDTD-PNSPESWCALGNCFS 432 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHHHHHHhhC-CCCcHHHHHhcchhh
Confidence 45677888889999999999998877652 4566777766543321 123322 2333322 346789999999999
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHH
Q 041816 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 233 (396)
-+++.+.|++.|++.++.... ...+|+.+..-+.....+|.|...|+...... +.+-.+|--+.-.|.+.++++.|+-
T Consensus 433 LQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred hhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHH
Confidence 999999999999999987532 78899999999999999999999999988653 2244556667888999999999999
Q ss_pred HHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (396)
.|+++.+.+ |.+.+....+...+-+.|+.++|++++++....+.. |+..-...+..+...+++++|+..+++
T Consensus 511 ~fqkA~~IN-------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 511 HFQKAVEIN-------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred HHHhhhcCC-------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHH
Confidence 999999986 678888889999999999999999999999887665 666666677778889999999999999
Q ss_pred HHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 314 MMDQGVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 314 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
+.+. .|+ ...|..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 583 Lk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 583 LKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 9884 454 567888899999999999999999988875
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=4.7e-11 Score=98.22 Aligned_cols=259 Identities=17% Similarity=0.120 Sum_probs=198.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHH
Q 041816 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP---DAVAFTSLIKGLCAESRIMEA 196 (396)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a 196 (396)
.++.++|.++|-+|.+.. +-...+.-+|.+.|.+.|..+.|+.++..+.++.--+ .......|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 378999999999998843 2244456678899999999999999999998752111 134556677889999999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCC-HhhHHHHHHHHhccCCHHHHHHH
Q 041816 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKEL 275 (396)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~ 275 (396)
+.+|..+.+.|. --..+...|+..|-...++++|+++-+++...++.. .... ...|.-|...+....+.+.|..+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~---~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT---YRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---chhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999998753 345677889999999999999999999988876311 0001 23466677777788999999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041816 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355 (396)
Q Consensus 276 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 355 (396)
+.+....+.+ .+..--.+.+.....|+++.|.+.++.+.+.+...-..+...|..+|...|+.++....+.++.+. .
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~ 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--N 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--c
Confidence 9999887544 455556677888999999999999999999865555678899999999999999999999999885 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 356 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
+....-..+.+......-.+.|..++.+-..
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 4444444455544455556666666555444
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.1e-11 Score=106.39 Aligned_cols=280 Identities=12% Similarity=0.010 Sum_probs=210.5
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK-TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
.+++.|+.+.|++++.-+.+......+...-|.-+-.+.+ -.++..|.+.-+...... .-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 4778888999998888776655442333333332222333 346777777777665432 22333333333334456899
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
++|.+.|.+.+...-.-....|| +.-.+-..|++++|+..|-++... +..+..+...+.+.|-...+...|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999998764332233333 334567789999999999888754 2346777888889999999999999999888
Q ss_pred HhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041816 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (396)
... ++.|+...+-|...|-+.|+..+|++.+-+--.. ++-+..+...|...|....-+++++.+|++..-
T Consensus 585 ~sl-------ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 585 NSL-------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred ccc-------CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 765 5888999999999999999999999987665543 345888999999999999999999999998765
Q ss_pred CCCCHhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041816 319 VQPDVVTFNVIMDELC-KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373 (396)
Q Consensus 319 ~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 373 (396)
++|+..-|..++..|. +.|++.+|.++|+...++ ++.|.....-|++.+...|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 5899999998876654 689999999999999887 88899999999999888774
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=4.6e-11 Score=102.60 Aligned_cols=155 Identities=16% Similarity=0.111 Sum_probs=112.1
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 041816 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301 (396)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 301 (396)
+-..|++++|++.|-++... +..+..+...+...|....+..+|++++.+.... ++-|+.....|...|-+.
T Consensus 534 ~e~~~~ldeald~f~klh~i-------l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAI-------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 33445555555555444332 2345555566666677777777777777665543 334777888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHH
Q 041816 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF-CLTGRVNHAKEL 380 (396)
Q Consensus 302 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~~ 380 (396)
|+-.+|...+-+--+. ++-+..+...|...|....-+++++..|++..- +.|+..-|..++..| .+.|+++.|+++
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 8888888776554433 456777888888888999999999999998765 699999999998766 567999999999
Q ss_pred HHHHHhC
Q 041816 381 FVSMESM 387 (396)
Q Consensus 381 ~~~m~~~ 387 (396)
|++..+.
T Consensus 683 yk~~hrk 689 (840)
T KOG2003|consen 683 YKDIHRK 689 (840)
T ss_pred HHHHHHh
Confidence 9998753
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=1.8e-11 Score=102.58 Aligned_cols=200 Identities=15% Similarity=0.090 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhH
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------PNNGDVL 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHH
Confidence 4455555666666666666666666665543 2345555666666666666666666666666543 3344556
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMKDKNIN-PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 335 (396)
..+...+...|++++|.+.+++....... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence 66666666666777777766666543211 123455556666777777777777777766543 2234566667777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
.|++++|...+++..+. .+.+...+..+...+...|+.++|..+++.+..
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777777777665 344556666666777777777777777776654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4e-11 Score=103.20 Aligned_cols=195 Identities=11% Similarity=0.020 Sum_probs=146.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHH
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (396)
|+-.+.+-|.-.++.++|..+|++..+.+ +....+|+.+..-|....+...|.+-++.+.+.+ |.|-..|-.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-------p~DyRAWYG 403 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-------PRDYRAWYG 403 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-------chhHHHHhh
Confidence 33444455566677888999999888875 3457788888888999999999999999888875 778888999
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 041816 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338 (396)
Q Consensus 259 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 338 (396)
|.++|.-.+...=|+-.|++.....+. |...|.+|..+|.+.++.++|++.|......| ..+...+..|.+.|-+.++
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHh
Confidence 999999888888888888888876544 88889999999999999999999998888765 3356788888888999999
Q ss_pred HHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 339 MDEASRLLELMILR----GVNPN--TSTFSTLMDGFCLTGRVNHAKELFVS 383 (396)
Q Consensus 339 ~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 383 (396)
.++|...|++-++. |...+ .....-|..-+.+.+++++|..+...
T Consensus 482 ~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 482 LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 99988888777652 32222 12222234455667777666554433
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=5.6e-11 Score=102.96 Aligned_cols=305 Identities=13% Similarity=0.119 Sum_probs=169.6
Q ss_pred HhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHH
Q 041816 73 RCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YTYNILINC 151 (396)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~ 151 (396)
..+..|+.+.++|++++|++.+.+.+...+. .+..|.....+|...|+|+++.+.-.+.++.+ |+- ..+..-..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPD--EPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCC--CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHH
Confidence 4566788999999999999999999986543 37889999999999999999998888877743 442 244444555
Q ss_pred HHhcCChhhHHHHH------------------HHH------------Hh-cC--CCCCHH--------------------
Q 041816 152 FCKMGRVSHGFVVL------------------GRI------------LR-SC--FTPDAV-------------------- 178 (396)
Q Consensus 152 ~~~~g~~~~a~~~~------------------~~~------------~~-~~--~~~~~~-------------------- 178 (396)
+-..|++++|+.=. ++. .+ .+ .-|+..
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 55555555443210 000 00 00 001100
Q ss_pred -------------------------------------------------------HHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 179 -------------------------------------------------------AFTSLIKGLCAESRIMEAAALFTKL 203 (396)
Q Consensus 179 -------------------------------------------------------~~~~l~~~~~~~g~~~~a~~~~~~~ 203 (396)
+.......+.-.|+.-.|..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 0000011111234444455555555
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---------------------------ccccCCHhhH
Q 041816 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG---------------------------VVCKPNTVTY 256 (396)
Q Consensus 204 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~ 256 (396)
++.... +...|--+..+|....+.++....|.+....+.... ..-+.+...|
T Consensus 353 I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 353 IKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred HhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 544321 222255555556666666666666666555441000 0002233344
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHhhH--HHH
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV-----QPDVVTF--NVI 329 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~--~~l 329 (396)
.-+.-+..+.+.+++++..|++.+++-+ --+..|+.....+...+++++|.+.|+..++..- ..+...+ ..+
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKAL 510 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence 4444444455566666666666655422 2455666666666667777777777766664311 1111111 111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 330 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
+- +.-.+++..|..++++.++.. +.....|..|...-.+.|+.++|+++|++-.
T Consensus 511 l~-~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 511 LV-LQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hh-hchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11 112366777777777766641 2244567778888888888888888888753
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.53 E-value=2.2e-11 Score=102.05 Aligned_cols=200 Identities=11% Similarity=0.032 Sum_probs=92.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (396)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3344445555555555555555555554432 122334444444555555555555555555443321 33344444444
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
+...|++++|.+.+++..+.... +.....+..+...+...
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~----------------------------------------~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLY----------------------------------------PQPARSLENAGLCALKA 148 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcccc----------------------------------------ccchHHHHHHHHHHHHc
Confidence 44455555555555444432110 11223334444444555
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 346 (396)
|++++|.+.+++....... +...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.
T Consensus 149 g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred CCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5555555555554443221 2334444555555555555555555555443 1223334444445555555555555555
Q ss_pred HHHH
Q 041816 347 ELMI 350 (396)
Q Consensus 347 ~~m~ 350 (396)
+.+.
T Consensus 227 ~~~~ 230 (234)
T TIGR02521 227 AQLQ 230 (234)
T ss_pred HHHH
Confidence 4443
No 48
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.47 E-value=7.4e-12 Score=115.43 Aligned_cols=258 Identities=14% Similarity=0.137 Sum_probs=152.7
Q ss_pred HHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 041816 96 YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 175 (396)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 175 (396)
.+...|+. |+.++|..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+..+.++.+.+. .|
T Consensus 15 ~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep 81 (1088)
T KOG4318|consen 15 LHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EP 81 (1088)
T ss_pred HHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CC
Confidence 34444444 55566666666666666666665 6666655555555566666666666666555544 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (396)
...+|..|..+|...||+.. |+...+ ....+...+...|.......++..+.-.++ .-||.
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~-----~lpda-- 142 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPH-----SLPDA-- 142 (1088)
T ss_pred chhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcc-----cchhH--
Confidence 56666666666666666544 222111 111223334444444444444433322111 12332
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 041816 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNI-NPDVVTYNSLIHGFCYAND-WNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333 (396)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 333 (396)
...+.-....|-++.+.+++..+..... .|..+ +++-+..... +++-..+.+...+ .|+..+|.+++++-
T Consensus 143 -~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~a 214 (1088)
T KOG4318|consen 143 -ENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRA 214 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHH
Confidence 2233334455667777777766643211 11111 2444433332 3333333333322 58889999999998
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccC
Q 041816 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396 (396)
Q Consensus 334 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty 396 (396)
...|+++.|..++.+|.+.|++.+...|..|+-+ .|+..-+..+++-|.+.|+.|+..||
T Consensus 215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchh
Confidence 9999999999999999999998888888888766 78888888888999999999998885
No 49
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.3e-10 Score=108.60 Aligned_cols=294 Identities=13% Similarity=0.079 Sum_probs=216.8
Q ss_pred CChhHHHHHHHHHH----hcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCH------HhHHHHHHH
Q 041816 85 ITPNEAFCIFDYML----NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST---GLFPDL------YTYNILINC 151 (396)
Q Consensus 85 ~~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~------~~~~~li~~ 151 (396)
+++..++.+|..+. ..+.. ..++..|.+...+...|++.+|...|+..... ...+|. .+-..+..+
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 44445555555443 22333 56778888888888889999998888887654 112232 233446666
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHH
Q 041816 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a 231 (396)
.-..++++.|.+.|..+++..+. -+..|--++.+....++..+|...+....... ..++.++..+...+.+..++..|
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhccc
Confidence 67778888888888888876321 23344444444444577888888888877754 45677788888888888888888
Q ss_pred HHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc------------cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041816 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK------------EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~------------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 299 (396)
.+-|+.....-. ..+|+.+...|.+.|.+ .+..+.|+++|.+.....+. |...-|-+.-.++
T Consensus 584 ~k~f~~i~~~~~-----~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA 657 (1018)
T KOG2002|consen 584 KKKFETILKKTS-----TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLA 657 (1018)
T ss_pred ccHHHHHHhhhc-----cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhh
Confidence 887776665432 23566666666665543 24578999999999887655 7788888889999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041816 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAK 378 (396)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~ 378 (396)
..|++.+|..+|.++.+... -+..+|-.+.++|...|++..|+++|+...+. .-..+..+...|.+++.+.|++.+|.
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred hccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999998643 35568899999999999999999999977764 44558899999999999999999999
Q ss_pred HHHHHHHhCC
Q 041816 379 ELFVSMESMG 388 (396)
Q Consensus 379 ~~~~~m~~~g 388 (396)
+.+.......
T Consensus 737 ~~ll~a~~~~ 746 (1018)
T KOG2002|consen 737 EALLKARHLA 746 (1018)
T ss_pred HHHHHHHHhC
Confidence 9988877643
No 50
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=3.8e-11 Score=98.88 Aligned_cols=230 Identities=13% Similarity=0.065 Sum_probs=196.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 041816 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 225 (396)
+.+.++|.+.|.+.+|..-++..++. .|-+.+|..|-+.|.+..++..|+.+|.+-.+. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56889999999999999999998877 456778888999999999999999999988775 233444445677788889
Q ss_pred CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 041816 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 305 (396)
++.++|.++|+...+.. +.++.....+...|.-.++++.|++.|+.+...|+. ++..|+.+.-+|.-.++++
T Consensus 304 ~~~~~a~~lYk~vlk~~-------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HhHHHHHHHHHHHHhcC-------CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 99999999999998875 567788888888899999999999999999999988 8999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 306 EANCLLIEMMDQGVQPD--VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 383 (396)
-++.-|.+....-..|+ ...|-.+.......||+..|.+.|+-..... .-....++.|.-.-.+.|++++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999999886544455 3467778888888999999999999888762 44678899998888999999999999998
Q ss_pred HHhC
Q 041816 384 MESM 387 (396)
Q Consensus 384 m~~~ 387 (396)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 8764
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=1e-09 Score=93.03 Aligned_cols=275 Identities=11% Similarity=0.047 Sum_probs=215.2
Q ss_pred HHHHHHHh--cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041816 112 LLFGCLAK--TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189 (396)
Q Consensus 112 ~l~~~~~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (396)
.+..++.+ .|+|.+|+++..+-.+.+-. ....|..-..+.-..|+.+.+-.++.+..+....++....-+..+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34444433 59999999999998887744 3455777788888999999999999999887556788888889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCccc-ccCCHhhHHHHHHHHhccCC
Q 041816 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV-CKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~ 268 (396)
.|+.+.|..-++++.+.+ +.+........++|.+.|++.....++..+.+.+...... ......+|..++.-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999886 5578889999999999999999999999999987211000 00123477888887777777
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
.+.-...+++.... .+-++..-.+++.-+.++|+.++|.++..+..+++..|+ -...-.+.+-++...-++..++
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHH
Confidence 77767777776543 233677788889999999999999999999999877666 2223345677888888888877
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccC
Q 041816 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396 (396)
Q Consensus 349 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty 396 (396)
-.+. .+.++..+.+|...|.+++.|.+|.+.|+...+. .|+..+|
T Consensus 320 ~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~ 364 (400)
T COG3071 320 WLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDY 364 (400)
T ss_pred HHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhH
Confidence 7765 4456689999999999999999999999977764 4665543
No 52
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.41 E-value=1e-09 Score=100.43 Aligned_cols=294 Identities=16% Similarity=0.102 Sum_probs=206.0
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hc-----
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC-KM----- 155 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~-~~----- 155 (396)
...|++++|++.++.....-. ............+.+.|+.++|..+|..+.+.+ |+...|...+..+. -.
T Consensus 15 ~e~g~~~~AL~~L~~~~~~I~--Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQIL--DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHCCCHHHHHHHHHhhhhhCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 356889999999988655433 355667778899999999999999999999987 66666655554443 22
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 041816 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI-MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
.+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|+|+ +|+.+-..|.......-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 24677788888887654 3332222222222222233 34556677778888653 466666667766666666666
Q ss_pred HHHHHhcCCCCc--------ccccCCHh--hHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH
Q 041816 235 FEEMANGNGKFG--------VVCKPNTV--TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304 (396)
Q Consensus 235 ~~~~~~~~~~~~--------~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 304 (396)
+......-...+ ..-+|+.. ++..+...|...|++++|++.+++.++..+. .+..|..-.+.+-+.|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCH
Confidence 666543321110 01245553 4466678889999999999999999887543 477888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCCHHH
Q 041816 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS------TF--STLMDGFCLTGRVNH 376 (396)
Q Consensus 305 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~--~~li~~~~~~g~~~~ 376 (396)
.+|...++...... .-|...=+-.+..+.+.|++++|.+++....+.+..|-.. +| .....+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999875 3466677778888999999999999999998776544221 22 445678899999999
Q ss_pred HHHHHHHHHh
Q 041816 377 AKELFVSMES 386 (396)
Q Consensus 377 A~~~~~~m~~ 386 (396)
|++.|..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 9988776654
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=7e-10 Score=97.99 Aligned_cols=274 Identities=14% Similarity=0.089 Sum_probs=205.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
++.....-..-+...+++.+..++++...+.. ++....+..-|.++.+.|+..+-..+=.++++.- +....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 44444555556677889999999999887764 5667777777778888898888888877887764 346788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
.|...|+..+|.++|.+..... +.=...|-.+...|+-.|+.+.|...+..+.+.- +-...-+.-+.--|.+
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-------~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-------PGCHLPSLYLGMEYMR 392 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-------cCCcchHHHHHHHHHH
Confidence 8888899999999998877653 1235578888888999999999988888776642 2233334455566778
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---C-CCHhhHHHHHHHHHhcCCH
Q 041816 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ--GV---Q-PDVVTFNVIMDELCKNGKM 339 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~---~-p~~~~~~~l~~~~~~~g~~ 339 (396)
.++.+.|.+.|.+.....+. |+..++-+.-...+.+.+.+|..+|+..... .+ . --..+++.|..+|.+.+++
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 88899999998888765433 6777777777777788888998888877621 11 1 1234678888888899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 041816 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393 (396)
Q Consensus 340 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 393 (396)
++|+..+++.+.. .+-+..++.++.-.|...|+++.|.+.|.+... +.|+.
T Consensus 472 ~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n 522 (611)
T KOG1173|consen 472 EEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDN 522 (611)
T ss_pred HHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCcc
Confidence 9999999888876 455888888888888888999999988888763 55665
No 54
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.39 E-value=2.8e-09 Score=99.15 Aligned_cols=263 Identities=14% Similarity=0.072 Sum_probs=206.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 041816 116 CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195 (396)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (396)
.+.-.|++++|.+++.++.+.. +.+...|..|...|-..|+.+++...+-..-...+ -|...|..+.......|++++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHH
Confidence 3444599999999999998875 34778899999999999999999887766655543 377999999999999999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhH----HHHHHHHhccCCHHH
Q 041816 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY----TTIIDGLCKEGFVDK 271 (396)
Q Consensus 196 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~ 271 (396)
|.-.|.+.++.. +++....-.-...|-+.|+...|...|.++.... .+.|..-+ -..+..+...++-+.
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~------p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD------PPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999885 4566666667788999999999999999999875 12222222 234556777888899
Q ss_pred HHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------------------------C---
Q 041816 272 AKELFLQMKDK-NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV---------------------------Q--- 320 (396)
Q Consensus 272 a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~--- 320 (396)
|.+.++..... +-..+...++.++..+.+...++.|......+..... .
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 99999887762 2223566788888888888888888877766654110 0
Q ss_pred ---------------------------------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041816 321 ---------------------------------PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367 (396)
Q Consensus 321 ---------------------------------p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 367 (396)
-+...|.-+.++|...|++.+|+.+|..+......-+...|..+..+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 12233567778899999999999999999987555567899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 041816 368 FCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 368 ~~~~g~~~~A~~~~~~m~~~ 387 (396)
|...|.+++|.+.|++....
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhc
Confidence 99999999999999998864
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=4e-10 Score=101.89 Aligned_cols=244 Identities=17% Similarity=0.097 Sum_probs=180.8
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhc-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C--
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRS-----CF-TPDAV-AFTSLIKGLCAESRIMEAAALFTKLKAF-----G-- 207 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g-- 207 (396)
..+...+...|...|+++.|+.+++..++. |. .|... ..+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 446677899999999999999999988764 21 22333 3345778899999999999999988653 2
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHh-hHHHHHHHHhccCCHHHHHHHHHHHhhC---C
Q 041816 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV-TYTTIIDGLCKEGFVDKAKELFLQMKDK---N 283 (396)
Q Consensus 208 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~---~ 283 (396)
.+.-..+++.|..+|.+.|++++|...++...+.....-....|.+. .++.++..+...+++++|..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12224677888889999999999988888765533110000123333 4567777889999999999999876431 1
Q ss_pred CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 284 INP----DVVTYNSLIHGFCYANDWNEANCLLIEMMDQ----GV--QP-DVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 284 ~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
+.+ -..+++.|...|...|++++|.+++++++.. +. .+ ....++.+...|.+.+...+|.++|.+...-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2467999999999999999999999998742 11 22 2456788899999999999999998876542
Q ss_pred ----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 353 ----G--VNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 353 ----g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
| .+-...+|..|...|...|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 22345789999999999999999999988775
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=1.8e-12 Score=79.25 Aligned_cols=50 Identities=42% Similarity=0.895 Sum_probs=48.5
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041816 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370 (396)
Q Consensus 321 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 370 (396)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=1.6e-10 Score=95.34 Aligned_cols=230 Identities=13% Similarity=0.100 Sum_probs=195.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041816 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190 (396)
Q Consensus 111 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (396)
+.+..+|.+.|.+.+|.+.++..... .|-+.||..|-+.|.+..+.+.|+.++.+-++.- +-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56888999999999999999988775 4778888999999999999999999999988763 33555556677888889
Q ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHH
Q 041816 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270 (396)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (396)
++.++|.++|+...+.. +.++.....+...|.-.++++.|++.|+.+.+.| .-+...|+.+.-+|.-.+++|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-------~~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-------AQSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-------CCChHHHhhHHHHHHhhcchh
Confidence 99999999999998874 4577777888888999999999999999999988 567889999999999999999
Q ss_pred HHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 271 KAKELFLQMKDKNINPD--VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 271 ~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
-++..|......--.|+ ...|..+.......|++..|.+.|+-....+ .-+...++.|.-.-.+.|++++|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999998876433333 4568888888889999999999999888654 34567899999888999999999999998
Q ss_pred HHhC
Q 041816 349 MILR 352 (396)
Q Consensus 349 m~~~ 352 (396)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 8764
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.34 E-value=3.7e-09 Score=91.52 Aligned_cols=217 Identities=13% Similarity=0.004 Sum_probs=117.0
Q ss_pred ChhHHHHHHHHHHhcCCCC--CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH
Q 041816 86 TPNEAFCIFDYMLNMRPSP--PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 163 (396)
..+.++.-+.+++...+.. .....|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3455555555555433221 123456666667777777777777777776654 2345667777777777777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 041816 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 243 (396)
.|+..++..+. +..++..+..++...|++++|.+.|++..+.. |+..........+...++.++|...+++.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77777765433 45566666677777777777777777776653 222111122222334566777777775544321
Q ss_pred CCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC---CCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK---NIN---PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
.++...+ .+.. ...|+...+ +.+..+.+. .+. .....|..+...+.+.|++++|...|++..+.
T Consensus 196 ------~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 ------DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred ------CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2222111 1222 223333332 233333211 000 01234555556666666666666666665554
No 59
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.34 E-value=5.2e-09 Score=98.18 Aligned_cols=290 Identities=10% Similarity=-0.010 Sum_probs=196.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhhHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF--PDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
..+..+++++.......+. ++...+.|...+.-.|+++.++++...+...... .-...|..+.++|-..|++++|.
T Consensus 250 ~s~~~~~~ll~~ay~~n~~--nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNE--NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 3466777777777666554 6677788888888888888888888887654311 12345777888888888888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC----ChHHHHHHHHHH
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG----HTIVALNLFEEM 238 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~ 238 (396)
..|.+..+....--...+.-+..+|.+.|+++.+...|+...+.. +-+..+...+...|...+ ..+.|..++.+.
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 888887765433224445567788888888888888888887763 345666666666666664 556777777777
Q ss_pred HhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHH----hhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM----KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
.+.. +.|...|..+...+....-+.. +..|... ...+-.+.+...|.+.......|++++|...|+..
T Consensus 407 ~~~~-------~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 407 LEQT-------PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred Hhcc-------cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 7653 6677788888777766544443 6665554 33444567788888888888889999998888887
Q ss_pred HHC---CCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 315 MDQ---GVQPDV------VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 315 ~~~---~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
... ...+|. .+--.+...+-..++.+.|.+.|..+.+. .+--+..|-.++......+...+|..++++..
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke-hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l 557 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE-HPGYIDAYLRLGCMARDKNNLYEASLLLKDAL 557 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CchhHHHHHHhhHHHHhccCcHHHHHHHHHHH
Confidence 754 122333 22234555666677888888888888775 22233344444433334467777777777766
Q ss_pred h
Q 041816 386 S 386 (396)
Q Consensus 386 ~ 386 (396)
.
T Consensus 558 ~ 558 (1018)
T KOG2002|consen 558 N 558 (1018)
T ss_pred h
Confidence 5
No 60
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.33 E-value=2e-08 Score=90.48 Aligned_cols=297 Identities=14% Similarity=0.105 Sum_probs=181.0
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
+.+.++-|..+|...++-.+ .+...|......--..|..++...++++.... ++-....|......+-..|++..|.
T Consensus 528 k~~~~~carAVya~alqvfp--~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQVFP--CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred hcchHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 44556667777776666443 35556666655555566666666666666554 2223444555555556666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
.++....+.... +..+|-.-+..-..+.+++.|..+|.+.... .++..+|.--+....-.+..++|++++++..+..
T Consensus 605 ~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f 681 (913)
T KOG0495|consen 605 VILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF 681 (913)
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC
Confidence 666666665433 5666666666666666666666666666554 2444445444444444555555555555554433
Q ss_pred CCCc---------------------------ccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 041816 243 GKFG---------------------------VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295 (396)
Q Consensus 243 ~~~~---------------------------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 295 (396)
..+. ..++..+..|..|...--+.|.+-.|..+++...-+++. +...|-..|
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~I 760 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESI 760 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHH
Confidence 1110 013444455666666666667777777777777666655 677777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----C-------------------------CCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 296 HGFCYANDWNEANCLLIEMMDQ----G-------------------------VQPDVVTFNVIMDELCKNGKMDEASRLL 346 (396)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~----~-------------------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 346 (396)
+.-.+.|..+.|..++.++... | +.-|......+...+-...++++|++.|
T Consensus 761 r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 761 RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8878888887777776665542 1 1223444455555666667788888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 347 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.+.++.+ +.+-.+|.-+...+.++|.-++-.++++.....
T Consensus 841 ~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 841 ERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 8887752 334567777777778888877777787777653
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=8.5e-10 Score=99.85 Aligned_cols=245 Identities=18% Similarity=0.151 Sum_probs=180.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCCHHh-HHHHHHHHHhcCChhhHHHHHHHHHhc-----CC-
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNST-----GL-FPDLYT-YNILINCFCKMGRVSHGFVVLGRILRS-----CF- 173 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~- 173 (396)
..+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++.+|..+|++++.. |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666889999999999999999988664 21 233333 334777889999999999999999753 21
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-cc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-C
Q 041816 174 -TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF-----GCK-PN-VITYSTLINGLCRTGHTIVALNLFEEMANGNG-K 244 (396)
Q Consensus 174 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g~~-~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~ 244 (396)
+.-..+++.|...|.+.|++++|..++++..+. |.. +. ...++.+...+...+++++|..+++...+... .
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 223567788888999999999999988876543 211 22 23456777889999999999999987655321 1
Q ss_pred CcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC-----C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 041816 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK-----N--INPDVVTYNSLIHGFCYANDWNEANCLLIEMMD- 316 (396)
Q Consensus 245 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 316 (396)
++...+--..+++.|...|.+.|++++|.++|++.... | ..-....++.|...|.+.+.+++|..+|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 11101122457899999999999999999999997642 1 111245678899999999999999999987553
Q ss_pred ---CCC-CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 317 ---QGV-QPD-VVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 317 ---~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
.|. .|+ ..+|..|...|...|+++.|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 221 223 46899999999999999999999887763
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.33 E-value=4.2e-09 Score=91.19 Aligned_cols=225 Identities=15% Similarity=0.038 Sum_probs=160.8
Q ss_pred CChhHHHHHHHHHHhCC-CCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041816 121 KHYDTVLSLFKRLNSTG-LFPD--LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197 (396)
Q Consensus 121 ~~~~~a~~~~~~~~~~~-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 197 (396)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++.++..+. +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 46677888888877532 1222 355777888899999999999999999987643 7899999999999999999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041816 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277 (396)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 277 (396)
..|++..+.. +-+..+|..+..++...|++++|.+.++...+.. |+..........+...++.++|.+.|+
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--------PNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999864 3357788889999999999999999999998865 332222222333456788999999997
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ---GV--QP-DVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 278 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
+..... .|+... ..+ .....|+..++ ..+..+.+. .. .| ....|..+...+.+.|++++|...|++..+
T Consensus 190 ~~~~~~-~~~~~~-~~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 190 QRYEKL-DKEQWG-WNI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHhhC-CccccH-HHH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 765432 223222 222 23345666554 344554421 11 11 235788999999999999999999999998
Q ss_pred CCCCCCHHHH
Q 041816 352 RGVNPNTSTF 361 (396)
Q Consensus 352 ~g~~p~~~~~ 361 (396)
... |+..-+
T Consensus 265 ~~~-~~~~e~ 273 (296)
T PRK11189 265 NNV-YNFVEH 273 (296)
T ss_pred hCC-chHHHH
Confidence 643 344333
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4e-09 Score=93.30 Aligned_cols=273 Identities=15% Similarity=0.067 Sum_probs=219.5
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
...++.+-+++++.+.+..|. ....+-.-|.++...|+..+-..+-.++.+.- +-.+.+|-++.--|.-.|+..+|.
T Consensus 256 ~~c~f~~c~kit~~lle~dpf--h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKDPF--HLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HcChHHHHHHHhHHHHhhCCC--CcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHH
Confidence 445688999999999987765 66677777889999999988888888887754 446788999998888899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
+.|.+....... =...|-.+...|+-.|..|+|...+...-+.= +-...-+--+.--|.+.+..+.|.+.|.+.....
T Consensus 333 ry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 333 RYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 999998765432 35678889999999999999999988776541 0011112234446888999999999999999874
Q ss_pred CCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC--CCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK--NIN----PDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
|.|+...+-+.-.....+.+.+|..+|+..... .+. --..+++.|..+|.+.+.+++|+..+++.+.
T Consensus 411 -------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 411 -------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred -------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 778899999999989999999999999987621 111 1234688999999999999999999999987
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041816 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370 (396)
Q Consensus 317 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 370 (396)
.. +-|..++.++.-.|...|+++.|.+.|.+... +.|+..+...++..+..
T Consensus 484 l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 484 LS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred cC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 63 66889999999999999999999999999887 58888777777765543
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=4.3e-09 Score=91.54 Aligned_cols=229 Identities=11% Similarity=0.048 Sum_probs=179.6
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
.+-.|+.-.|.+-|+..+...+.+++ .|-.+..+|++..+.++.+..|+...+.+. -|+.+|..-...+.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~--lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS--LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch--HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHH
Confidence 44457888999999999998776443 377788899999999999999999988763 477788888888888899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
|..-|++.+...+. +...|-.+.-+..+.+++++++..|++.++. ++.-+..|+.....+...++++.|.+.|+....
T Consensus 413 A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999999987644 6777877888888999999999999999886 455688999999999999999999999999887
Q ss_pred cCCCCcc-cccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 241 GNGKFGV-VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 241 ~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
....... .+.+.+.+.-.++..- =.+++..|..++++..+.+.+ ....|..|...-.+.|+.++|+++|++...
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5421000 0011111222222222 238899999999998887655 667888899989999999999999988654
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=1.9e-08 Score=79.42 Aligned_cols=188 Identities=12% Similarity=-0.016 Sum_probs=78.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (396)
|.-.|...|++..|..-+++.++.. +-+..+|..+...|.+.|+.+.|.+.|++.++..+. +..+.|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 3334444444444444444444432 112334444444444444444444444444443322 34444444444444444
Q ss_pred HHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHH
Q 041816 193 IMEAAALFTKLKAFGC-KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 271 (396)
+++|...|++...... .--..+|..+.-+..+.|+.+.|...|++..+.. +....+...+.....+.|++..
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-------p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-------PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-------cCCChHHHHHHHHHHhcccchH
Confidence 4444444444443210 0112334444444444444444444444444432 2223333344444444444444
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 041816 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310 (396)
Q Consensus 272 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 310 (396)
|...++.....+. ++..+.-..|+.--..|+-+.+.++
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 4444444443332 3444444444444444444444333
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.24 E-value=1.3e-07 Score=84.74 Aligned_cols=294 Identities=12% Similarity=-0.010 Sum_probs=180.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChh
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPL-TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK----MGRVS 159 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~ 159 (396)
++++++...+....+..+...+. .........+...|++++|.+++++..+.. +.|...+.. ...+.. .+...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~ 97 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRD 97 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCch
Confidence 45666666666666554432232 223333445677899999999999988753 224434442 222323 34455
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
.+.+.+.... ...+........+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..++++..
T Consensus 98 ~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 98 HVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred hHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 5555554411 1122234455566778889999999999999999875 4467788889999999999999999999988
Q ss_pred hcCCCCcccccCCH--hhHHHHHHHHhccCCHHHHHHHHHHHhhCCC-CCChhhH-H--HHHHHHHhcCCHHHHHHH--H
Q 041816 240 NGNGKFGVVCKPNT--VTYTTIIDGLCKEGFVDKAKELFLQMKDKNI-NPDVVTY-N--SLIHGFCYANDWNEANCL--L 311 (396)
Q Consensus 240 ~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~~~~~~a~~~--~ 311 (396)
.... ..++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....+... +
T Consensus 176 ~~~~-----~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~ 250 (355)
T cd05804 176 DTWD-----CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDL 250 (355)
T ss_pred hccC-----CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHH
Confidence 7541 01222 3456788899999999999999999864432 1111111 1 223333344443333332 1
Q ss_pred HHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------C--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 041816 312 IEMMDQGV--QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN------P--NTSTFSTLMDGFCLTGRVNHAKELF 381 (396)
Q Consensus 312 ~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~------p--~~~~~~~li~~~~~~g~~~~A~~~~ 381 (396)
........ ............++...|+.++|..+++.+...... . .....-...-++...|+.++|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L 330 (355)
T cd05804 251 ADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELL 330 (355)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHH
Confidence 11111111 111122235677788899999999999988764211 0 1122222223456889999999999
Q ss_pred HHHHhC
Q 041816 382 VSMESM 387 (396)
Q Consensus 382 ~~m~~~ 387 (396)
......
T Consensus 331 ~~al~~ 336 (355)
T cd05804 331 GPVRDD 336 (355)
T ss_pred HHHHHH
Confidence 887653
No 67
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=1.3e-07 Score=82.34 Aligned_cols=287 Identities=11% Similarity=0.078 Sum_probs=191.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 164 (396)
|+...|.++|++-.. .. |+...|++.+..-.+.+.++.|..+|++..-. .|+..+|.-..+.=.+.|.+..+..+
T Consensus 155 gNi~gaRqiferW~~--w~-P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 155 GNIAGARQIFERWME--WE-PDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred cccHHHHHHHHHHHc--CC-CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 556677777776654 23 67888888888888888888888888887653 47777776666666666666666555
Q ss_pred HHHHHhc-C-----------------------------------------------------------------------
Q 041816 165 LGRILRS-C----------------------------------------------------------------------- 172 (396)
Q Consensus 165 ~~~~~~~-~----------------------------------------------------------------------- 172 (396)
|+..++. |
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 5544432 1
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH--HHHHHHHH--------HHHhcCChHHHHHH
Q 041816 173 --------FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV--ITYSTLIN--------GLCRTGHTIVALNL 234 (396)
Q Consensus 173 --------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~ll~--------~~~~~g~~~~a~~~ 234 (396)
-+.|-.+|-..++.-...|+.+...++|++.+.. ++|-. ..|.-.|. .-....+.+.+.++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 1123344444444444555566666666655543 23311 11211111 11224556666666
Q ss_pred HHHHHhcCCCCcccccCCHhhHHHHHHH----HhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 041816 235 FEEMANGNGKFGVVCKPNTVTYTTIIDG----LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 310 (396)
|+...+. +|-...||.-+=-+ -.++.++..|.+++.... |..|...++...|..-.+.++++.+..+
T Consensus 389 yq~~l~l-------IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 389 YQACLDL-------IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHhh-------cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 6666553 34444555444333 346778888888887765 4567888899999988999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG-VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 311 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
+++.++.+ +-|..+|......=...|+.+.|..+|+-++... .......|-+.|+-=...|.++.|..+|+++.+.
T Consensus 460 YEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 460 YEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 99999875 4567788888888888999999999999988752 2224456667777677899999999999998864
No 68
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.24 E-value=8.7e-08 Score=86.52 Aligned_cols=287 Identities=8% Similarity=-0.039 Sum_probs=197.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 84 AITPNEAFCIFDYMLNMRPSPP-PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
+|..-....+....+..|...- -..+|+.-...|.+.+.++-|..+|...++.- +.+...|...+..--..|..+.-.
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHH
Confidence 3556666777777777765533 34689999999999999999999999998753 446778888887777889999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
.++.+.+..-+ -....|-.....+-..|+...|..++....+.. +.+...|-.-+.......+++.|..+|.+.....
T Consensus 571 Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~s 648 (913)
T KOG0495|consen 571 ALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSIS 648 (913)
T ss_pred HHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC
Confidence 99999998743 356667777778888899999999999998875 4478899999999999999999999999988754
Q ss_pred CCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 041816 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 322 (396)
|+...|.--+..---.++.++|.+++++..+.-.. -...|-.+.+.+-+.++.+.|...|..-.+. ++-.
T Consensus 649 --------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ 718 (913)
T KOG0495|consen 649 --------GTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNS 718 (913)
T ss_pred --------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCC
Confidence 67777776666666678888888888777654211 2334555555555555555555555443332 1222
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
...|-.|.+.=-+.|.+-+|..++++..-++ +-+...|-..|++-.+.|..+.|..+..+.
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2344444444444455555555555544431 224445555555555555555555444443
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=3.2e-08 Score=78.16 Aligned_cols=195 Identities=12% Similarity=0.014 Sum_probs=103.6
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 041816 76 SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (396)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 155 (396)
.++.+|+..|++..|..-+++.++.+|. +..+|..+...|.+.|..+.|.+.|++..+.. +-+..+.|.....+|..
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 3445555666666666666666555443 55555555555666666666666666555533 12344455555555555
Q ss_pred CChhhHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 041816 156 GRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
|++++|...|++..... ...-..+|..+.-+..+.|+++.|...|++..+.. +-...+...+.....+.|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 66666666665555431 11123445555555555566666666665555543 22233444555555555666666655
Q ss_pred HHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
++.....+ .++..+.-..|..--..|+.+.+-+.=.++..
T Consensus 196 ~~~~~~~~-------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRG-------GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcc-------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555554 34555555555555555555555554444443
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=5.9e-08 Score=82.92 Aligned_cols=288 Identities=12% Similarity=0.042 Sum_probs=188.2
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-TYNILINCFCKMGRVSHGFV 163 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~ 163 (396)
++...|.+.+-.+......+.++.....+..++...|+.++|+..|++....+ |+.. ......-.+.+.|+.+....
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHH
Confidence 34445555555444444455677777778888888888888888888776532 3222 11222223446677777666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 041816 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 243 (396)
+...+.... +.+...|..-+.......++..|+.+-++.++.. +.+...+-.-...+...+++++|.-.|+......
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 666665432 1233444444444555677778887777777654 3355556555667777888888888888877754
Q ss_pred CCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCC
Q 041816 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI-HGFC-YANDWNEANCLLIEMMDQGVQP 321 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~p 321 (396)
|-+...|.-|+..|...|.+.+|..+-+...+. ..-+..+...+. ..|. ....-++|.++++...+. .|
T Consensus 365 ------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P 435 (564)
T KOG1174|consen 365 ------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NP 435 (564)
T ss_pred ------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CC
Confidence 456778888888888888888887766654432 112444444442 2222 222346677777766653 45
Q ss_pred CH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 322 DV-VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 322 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
+- ...+.+...+...|..+.+..+++.... ..||....+.|.+.+...+.+++|++.|....+.+
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 53 3556777888889999999999998887 47899999999999999999999999888776543
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=1.3e-07 Score=86.89 Aligned_cols=262 Identities=11% Similarity=0.095 Sum_probs=186.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE-- 190 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 190 (396)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.++. |..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 445678899999999999886543 3333445667788899999999999999999998743 666666666666322
Q ss_pred ---CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChH-HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 191 ---SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI-VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 191 ---g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
.+.+....+|+++...- |.......+.-.+....++. .+...+..+...| + +.+|+.+-..|...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg------v---PslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG------V---PSLFSNLKPLYKDP 156 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC------C---chHHHHHHHHHcCh
Confidence 35778888999887763 43333333322222212222 3445555666655 2 34677777777776
Q ss_pred CCHHHHHHHHHHHhhC----C----------CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHH
Q 041816 267 GFVDKAKELFLQMKDK----N----------INPDV--VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-VVTFNVI 329 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l 329 (396)
.+.+...+++...... + -.|.. .++..+.+.|...|++++|+.++++.++. .|+ +..|..-
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~K 234 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTK 234 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 6666666776665432 1 12333 24566788889999999999999999987 465 6788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041816 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390 (396)
Q Consensus 330 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 390 (396)
.+.+-+.|++.+|.+.++...... .-|...=+-.+..+.+.|+.++|.+++....+.+..
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~ 294 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVD 294 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999863 225555566677789999999999999999877653
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=3.4e-07 Score=82.11 Aligned_cols=274 Identities=9% Similarity=-0.034 Sum_probs=174.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLY-TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (396)
.....|..+...+...|+.+.+.+.+....+... .++.. ........+...|++++|.+++++..+..+. +...+..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH
Confidence 4566777778888888888888777777654321 12221 2222344566789999999999999887533 4444442
Q ss_pred ---HHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHH
Q 041816 183 ---LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259 (396)
Q Consensus 183 ---l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (396)
+.......+..+.+.+.++.... ..+........+...+...|++++|...+++..+.. +.+...+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------p~~~~~~~~l 154 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------PDDAWAVHAV 154 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCcHHHHHH
Confidence 11222224555666666654211 122234455566778899999999999999999875 5667788899
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhH-H--HHHHH
Q 041816 260 IDGLCKEGFVDKAKELFLQMKDKNIN-PDV--VTYNSLIHGFCYANDWNEANCLLIEMMDQGV-QPDVVTF-N--VIMDE 332 (396)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~~~~-p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~-~--~l~~~ 332 (396)
..++...|++++|...+++....... |+. ..|..+...+...|++++|..+++++..... .+..... + .++.-
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR 234 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH
Confidence 99999999999999999998765322 222 3456788889999999999999999864322 1112111 1 33333
Q ss_pred HHhcCCHHHHHHH--HHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 333 LCKNGKMDEASRL--LELMILRGVN--PNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 333 ~~~~g~~~~A~~~--~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
+...|..+.+.+. +......... ...........++...|+.++|..+++.+...
T Consensus 235 ~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 235 LELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4444544333333 1111111111 11222235666778899999999999998763
No 73
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=1e-06 Score=76.92 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=65.9
Q ss_pred cCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCh--hhHHHHH--------HHHHhcCCHHHHHHHHHHHHHCCC
Q 041816 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV--VTYNSLI--------HGFCYANDWNEANCLLIEMMDQGV 319 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li--------~~~~~~~~~~~a~~~~~~~~~~~~ 319 (396)
+-|..+|--.+..-...|+.+...++|+..... ++|-. ..|...| -.-....+.+.+.++++..++. +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 345567777777777788889988998888754 33321 1111111 1113455666666666655542 2
Q ss_pred CCCHhhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 320 QPDVVTFNVIMDELC----KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 320 ~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
+-...||.-+--+|+ ++.++..|.+++...+. .-|-..+|...|..=.+.+.+|...++|++.++
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 222233332222222 33444444444444432 234444444444444444444444444444444
No 74
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.08 E-value=1.2e-08 Score=87.22 Aligned_cols=249 Identities=16% Similarity=0.135 Sum_probs=144.2
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
..-.|++..++.-.+ .....+. ........+.+++.-.|+++.++ .++.... .|.......+...+...++-+.
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~-~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPE-NKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCH-HHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHhhhHHHHHHHhh-ccCCCch-hHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 345677777776655 3222221 33445556677777778776544 3333322 4555555545444433344444
Q ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 161 GFVVLGRILRSCFT-PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 161 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
++.-+++....... .+..........+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54444444333322 22333333335566678888888777542 255666677788888888888888888887
Q ss_pred hcCCCCcccccCCHhhHHHH----HHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 240 NGNGKFGVVCKPNTVTYTTI----IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (396)
+.+ .|. +...+ +..+...+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|..++.+..
T Consensus 159 ~~~--------eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 159 QID--------EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp CCS--------CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred hcC--------CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 654 232 22223 33333345688888888887654 44577778888888888888888888888876
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 041816 316 DQGVQPDVVTFNVIMDELCKNGKM-DEASRLLELMILR 352 (396)
Q Consensus 316 ~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 352 (396)
..+ +-+..+...++.+....|+. +.+.+.+.++...
T Consensus 229 ~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 229 EKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred Hhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 543 23455666677777777776 5666777777653
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=7.3e-07 Score=76.46 Aligned_cols=262 Identities=14% Similarity=0.001 Sum_probs=198.6
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 041816 76 SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (396)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 155 (396)
..+..+...|+.++|+..|++..-.++. ++.........+.+.|+++....+...+.... .-....|-.-.......
T Consensus 237 ~lak~~~~~Gdn~~a~~~Fe~~~~~dpy--~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~ 313 (564)
T KOG1174|consen 237 ALGKCLYYNGDYFQAEDIFSSTLCANPD--NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDE 313 (564)
T ss_pred HHhhhhhhhcCchHHHHHHHHHhhCChh--hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhh
Confidence 3455677899999999999999876654 55554444555678899998888888876532 12334444444555667
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 041816 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 235 (396)
.+++.|+.+-++.++.... +...+-.-...+...|++++|.-.|+...... +-+...|.-|+.+|...|.+.+|..+-
T Consensus 314 K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred hhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 8899999999998876533 56666666678888999999999999888763 457899999999999999999999888
Q ss_pred HHHHhcCCCCcccccCCHhhHHHHH-HHH-hccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 236 EEMANGNGKFGVVCKPNTVTYTTII-DGL-CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~li-~~~-~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (396)
+...+. ++.+..+.+.+. ..+ ....--++|.++++.-....+. -....+.+...|...|..+.++.+++.
T Consensus 392 n~~~~~-------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 392 NWTIRL-------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHH-------hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 776665 345556655552 222 2333457888888887765322 234567777888899999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 314 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
.... .||....+.|.+.+...+.+.+|++.|....+.
T Consensus 464 ~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 464 HLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8874 689999999999999999999999999988874
No 76
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.08 E-value=5.5e-07 Score=75.38 Aligned_cols=297 Identities=11% Similarity=0.081 Sum_probs=221.8
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH-HHHHHHHh
Q 041816 76 SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN-ILINCFCK 154 (396)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~li~~~~~ 154 (396)
.+|..++..|++.+|+.-|...++.+| .+-.++..-...|...|+-..|+.-+.+.++. +||-..-. .-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 346667788999999999999988544 35455555566788889999999999988874 57754322 23345779
Q ss_pred cCChhhHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 155 MGRVSHGFVVLGRILRSCFTPD--------------AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
+|.+++|..-|+.+++....-+ .......+..+...|+...|+.....+.+.. +-|...+..-..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 9999999999999998753211 1122334455667899999999999999874 558888888999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhh----HHHH--
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT----YNSL-- 294 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----~~~l-- 294 (396)
+|...|++..|+.-++...+.. ..++.++--+-..+...|+.+.++...++..+.+ ||... |-.|
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHH
Confidence 9999999999998888877764 5677788888888899999999999999888764 34322 1111
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 041816 295 -------IHGFCYANDWNEANCLLIEMMDQGVQPDV---VTFNVIMDELCKNGKMDEASRLLELMILRGVNP-NTSTFST 363 (396)
Q Consensus 295 -------i~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ 363 (396)
+......++|.+++...+..++....... ..+..+-.++...|.+.+|++...+..+. .| |+.++--
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~d 346 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHH
Confidence 12234567788888888887775422122 23455667778889999999999999874 45 4888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 364 LMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 364 li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
-..+|.-..++++|+.-|+...+.+
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 8899999999999999999988754
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.03 E-value=2.5e-06 Score=77.26 Aligned_cols=162 Identities=12% Similarity=0.080 Sum_probs=95.5
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 77 SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
.|..+..-|+.++|....+..+..++ .+.++|..+.-.+...+++++|++.|......+ +-|...|.-+.-.-++.|
T Consensus 47 kGL~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmR 123 (700)
T KOG1156|consen 47 KGLTLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMR 123 (700)
T ss_pred ccchhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHH
Confidence 35566777888888888888877554 477888888888888888888888888887754 224445544444444445
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHHHH--------------------
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITY-------------------- 215 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~-------------------- 215 (396)
+++.....-..+.+..+ .....|..+..++.-.|+...|..+++...+.. -.|+...+
T Consensus 124 d~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q 202 (700)
T KOG1156|consen 124 DYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQ 202 (700)
T ss_pred hhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHH
Confidence 55544444444444321 123334444444444445554444444443322 11222221
Q ss_pred --------------------HHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 216 --------------------STLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 216 --------------------~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
..-...+.+.+++++|..++..+....
T Consensus 203 ~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 203 KALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 223345667778888888888887764
No 78
>PLN02789 farnesyltranstransferase
Probab=99.01 E-value=1e-06 Score=76.43 Aligned_cols=207 Identities=11% Similarity=0.047 Sum_probs=134.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH--
Q 041816 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG-RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI-- 193 (396)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 193 (396)
+...++.++|+.+++++.+... -+..+|+..-.++...| ++++++..++++.+...+ +..+|+...-.+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 3344567777777777776431 13345555555555666 467777777777776544 555666555555555542
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc---CC--
Q 041816 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE---GF-- 268 (396)
Q Consensus 194 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~-- 268 (396)
+++..+++++.+.. +.|..+|+....++...|+++++++.++++.+.+ +.|..+|+....++.+. |.
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-------~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-------VRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-------CCchhHHHHHHHHHHhcccccccc
Confidence 56677777777765 4477788888778888888888888888887765 45666776666555443 22
Q ss_pred --HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041816 269 --VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA----NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335 (396)
Q Consensus 269 --~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 335 (396)
.++.++...++....+. |...|+.+...+... +...+|...+.+..+.+ ..+......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 24566666676666554 777888887777663 34466877777766643 3356677778888875
No 79
>PLN02789 farnesyltranstransferase
Probab=99.01 E-value=5.3e-07 Score=78.21 Aligned_cols=204 Identities=12% Similarity=0.080 Sum_probs=158.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh--hh
Q 041816 84 AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK-HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV--SH 160 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~ 160 (396)
.++.++|+.+.+.+++..|. +..+|+....++...| +++++++.++++.+.+. .+..+|+.....+.+.|+. ++
T Consensus 50 ~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHH
Confidence 35689999999999997765 7778888877888877 68999999999988653 3566787776666677763 67
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc---CCh----HHHHH
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT---GHT----IVALN 233 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~---g~~----~~a~~ 233 (396)
++++++.+++.... +..+|+...-++...|+++++++.++++++.+ +.|..+|+.....+.+. |.. ++.+.
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 88999999987754 88999999999999999999999999999986 44777888777666554 222 46777
Q ss_pred HHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc----CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 041816 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE----GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 300 (396)
...++.... +-|...|+.+...+... +...+|.+.+.+....++. +......|+..|+.
T Consensus 205 y~~~aI~~~-------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILAN-------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhC-------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 777777764 67888999998888773 4456688888887665443 66777888888775
No 80
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=1.3e-08 Score=87.09 Aligned_cols=249 Identities=17% Similarity=0.133 Sum_probs=142.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041816 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196 (396)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 196 (396)
+.-.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++.+.. .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344577777775555 222221223344556677777777766433 3333332 45555555555444443445555
Q ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHH
Q 041816 197 AALFTKLKAFGCK-PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275 (396)
Q Consensus 197 ~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 275 (396)
..-++.....+.. .+..........+...|++++|++++... .+.......+.+|.+.++++.|.+.
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------------~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------------GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------------TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------------CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 5544443333222 22222233334555677888887777542 2455666777788888888888888
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 276 FLQMKDKNINPDVVTYNSLIHGFCY----ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 276 ~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
++.|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+...
T Consensus 154 l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 154 LKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88887653 33344444444432 33577888888887653 456777777888888888888888888887766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 041816 352 RGVNPNTSTFSTLMDGFCLTGRV-NHAKELFVSMESM 387 (396)
Q Consensus 352 ~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 387 (396)
.. +-+..+...++.+....|+. +.+.+++.++...
T Consensus 230 ~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 230 KD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 52 33566677777777777776 5666777776653
No 81
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=1.6e-07 Score=83.72 Aligned_cols=252 Identities=17% Similarity=0.048 Sum_probs=182.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 041816 116 CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195 (396)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (396)
.+.+.|++.+|.-.|+.....+ +-+...|..|.......++-..|+..+.+.++..+. +..+.-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3567788888888888877765 236778888888888888888888888888887644 77778888888888888888
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHH---------HHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 196 AAALFTKLKAFGCKPNVITYSTLI---------NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 196 a~~~~~~~~~~g~~~~~~~~~~ll---------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
|.+.++.-+....+ -. |.... ..+.....+....++|-++....+ ..+|..+...|.-.|--.
T Consensus 372 Al~~L~~Wi~~~p~-y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~-----~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-YV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP-----TKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHhCcc-ch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC-----CCCChhHHhhhHHHHhcc
Confidence 88888776554211 00 00000 111122223344555555554431 347888889999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHH
Q 041816 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV-VTFNVIMDELCKNGKMDEASRL 345 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 345 (396)
|++++|...|+......+. |..+||.|...++...+.++|+..|.+.++. +|+. ...-.|.-+|...|.+++|.+.
T Consensus 444 ~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred hHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 9999999999999887655 8889999999999999999999999999984 6763 4555677789999999999998
Q ss_pred HHHHHhC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 346 LELMILR---------GVNPNTSTFSTLMDGFCLTGRVNHAKEL 380 (396)
Q Consensus 346 ~~~m~~~---------g~~p~~~~~~~li~~~~~~g~~~~A~~~ 380 (396)
|-..+.. +..++...|..|=.++.-.++.|-+.+.
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 8766542 1223456787777777777877755443
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=1.2e-07 Score=84.44 Aligned_cols=251 Identities=14% Similarity=0.069 Sum_probs=186.8
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
+++.|++.+|.-.|+..++..|. +...|..|....+..++-..|+..+.+..+.. +-|....-.|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 55778899999999999998775 89999999999999999999999999999865 2356777888888999999999
Q ss_pred HHHHHHHHHhcCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCCccHHHHHHHHHHHHhcCChHHH
Q 041816 161 GFVVLGRILRSCFTP--------DAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTIVA 231 (396)
Q Consensus 161 a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~g~~~~~~~~~~ll~~~~~~g~~~~a 231 (396)
|+..++..+...++- +...-.. ..+.....+....++|-++ ...+..+|..+...|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999999887654220 0000000 1111222234444555444 4455557888899999999999999999
Q ss_pred HHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 311 (396)
...|+.+.... |.|...||-|...++...+.++|+.-|.+.++..+. -+.....|.-.|...|.+++|...|
T Consensus 450 iDcf~~AL~v~-------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 450 VDCFEAALQVK-------PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHhcC-------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999875 678899999999999999999999999999886433 2445556666789999999999999
Q ss_pred HHHHHC---------CCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 041816 312 IEMMDQ---------GVQPDVVTFNVIMDELCKNGKMDEASR 344 (396)
Q Consensus 312 ~~~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~ 344 (396)
-.++.. +..++...|..|=.++.-.++.|.+.+
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 876632 112234566666555555565554433
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.5e-07 Score=79.70 Aligned_cols=302 Identities=12% Similarity=0.080 Sum_probs=187.1
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcC
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMG 156 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 156 (396)
|+..+..|+++.|+..|...+...| ++-..|..-..+|+..|++++|++=-.+-.+. .|+ ...|.....++.-.|
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 4556677778888888877766544 46667777777777777777777665555543 344 345666666666777
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHH------------------------------------------------------
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTS------------------------------------------------------ 182 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 182 (396)
++++|+..|.+-++.... +...++.
T Consensus 85 ~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred cHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 777777776665544311 2222222
Q ss_pred ------------------------------------------------------------------HHHHHHhcCCHHHH
Q 041816 183 ------------------------------------------------------------------LIKGLCAESRIMEA 196 (396)
Q Consensus 183 ------------------------------------------------------------------l~~~~~~~g~~~~a 196 (396)
+.++..+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 22222233334444
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041816 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276 (396)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 276 (396)
++.+....+.. -+..-++....+|...|...+.....+...+.++........=...+..+..+|.+.++++.|+..|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 44444444332 2333445555666666766666666665555542100000000112222444677788999999999
Q ss_pred HHHhhCCCCCChhhH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041816 277 LQMKDKNINPDVVTY-------------------------NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331 (396)
Q Consensus 277 ~~m~~~~~~p~~~~~-------------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 331 (396)
.+.......|+...= ..-...+.+.|++..|...|.++++.. +-|...|....-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence 887654444433221 112355678899999999999999876 567889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 332 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
+|.+.|.+..|++-.+..++. -++....|..=..++....+++.|++.|++-.+..
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999988877775 23344555555666667788999999998877654
No 84
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=2.6e-07 Score=90.06 Aligned_cols=204 Identities=12% Similarity=0.068 Sum_probs=97.6
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhc-CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH
Q 041816 143 YTYNILINCFCKMGRVSHGFVVLGRILRS-CFT---PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218 (396)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 218 (396)
..|-..|....+.++.++|.++.++.+.. ++. --...|.++++.-..-|.-+...++|+++.+.. -....|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 34455555555555555555555555432 111 012344444444444455555555555555532 122334555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHH
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN-PDVVTYNSLIHG 297 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~ 297 (396)
...|.+.+..++|-++++.|.+.. ......|...+..+.+..+-+.|..++.+..+.=.+ -......-.+..
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF-------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKF-------GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHh-------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 555555555555555555555542 234445555555555555555555555554432111 012222333333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041816 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356 (396)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 356 (396)
-.+.|+.+++..+|+...... +--...|+.++++-.++|+.+.++.+|++.+..++.|
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 345555555555555554431 2234455555555555555555555555555554443
No 85
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.90 E-value=2.4e-06 Score=83.73 Aligned_cols=241 Identities=11% Similarity=0.042 Sum_probs=187.6
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC---CHHhHHHHHHHHHhcCChhhHHHHHHH
Q 041816 92 CIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFP---DLYTYNILINCFCKMGRVSHGFVVLGR 167 (396)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (396)
+=|++.+...| .+...|-..|....+.++.++|.++.++++.. ++.- -...|.++++.-...|.-+...++|++
T Consensus 1445 eDferlvrssP--NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1445 EDFERLVRSSP--NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHHhcCC--CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 34555555444 57788999999999999999999999998753 2211 234677777777778888888999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 041816 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247 (396)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 247 (396)
+.+.. -...+|..|...|.+.+.+++|.++++.|.+.- .-....|...+..+.+..+-+.|..++.++.+.-
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l----- 1594 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL----- 1594 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-----
Confidence 98863 235678899999999999999999999998862 2467889999999999999999999999988753
Q ss_pred cccC--CHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--
Q 041816 248 VCKP--NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV-- 323 (396)
Q Consensus 248 ~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-- 323 (396)
+. ......-.+..-.+.|+.+.+..+|+......++ -...|+..|+.-.++|+.+.+..+|+++...++.|-.
T Consensus 1595 --Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1595 --PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred --chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 22 2344555566677899999999999999877544 6678999999999999999999999999998876643
Q ss_pred hhHHHHHHHHHhcCCHHHHHHH
Q 041816 324 VTFNVIMDELCKNGKMDEASRL 345 (396)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~A~~~ 345 (396)
..|.-.+..=-+.|+-+.++.+
T Consensus 1672 fffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1672 FFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHHHHhcCchhhHHHH
Confidence 3455555555555665544443
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=7.3e-06 Score=83.10 Aligned_cols=305 Identities=10% Similarity=-0.014 Sum_probs=196.0
Q ss_pred cccCChhHHHHHHHHHHhcCCC-----CCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HhHHHHHH
Q 041816 82 ITAITPNEAFCIFDYMLNMRPS-----PPP--LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL----YTYNILIN 150 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~-----~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~ 150 (396)
...|++++|...++.....-.. ++. ......+...+...|++++|...+++..+.-...+. ...+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 3457888888888877543211 111 122223344566789999999999998763211121 23455666
Q ss_pred HHHhcCChhhHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--c-cHHHHHHH
Q 041816 151 CFCKMGRVSHGFVVLGRILRS----CF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF----GCK--P-NVITYSTL 218 (396)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~--~-~~~~~~~l 218 (396)
.+...|++++|...+.+.... |. ......+..+...+...|++++|...+++..+. |.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 678899999999999888753 11 111334556677788899999999998876553 211 1 23345556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-ChhhH-----H
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP-DVVTY-----N 292 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~-----~ 292 (396)
...+...|++++|...+++........+ .......+..+...+...|++++|.+.++......... ....+ .
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQ--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 6677888999999999988765431111 01123445556778889999999999998875421110 11111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHH
Q 041816 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPD---VVTFNVIMDELCKNGKMDEASRLLELMILR----GVNPN-TSTFSTL 364 (396)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l 364 (396)
..+..+...|+.+.|...+........... ...+..+..++...|+.++|...+++.... |..++ ..+...+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 122444568899999998777553211111 112356777888999999999999988753 33322 3456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 365 MDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 365 i~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
..++.+.|+.++|...+.+..+..
T Consensus 738 a~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 778899999999999999987643
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=7.2e-07 Score=73.27 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=60.2
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH-HHHHHHhcCChhhHH
Q 041816 84 AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI-LINCFCKMGRVSHGF 162 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~a~ 162 (396)
..++++|++++....+..+ .+......|..+|....++..|-+.|+++... .|...-|.. -...+.+.+.+..|+
T Consensus 23 d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHH
Confidence 3468888888888777654 37777888888998999999999999998764 355554432 244556777788888
Q ss_pred HHHHHHHh
Q 041816 163 VVLGRILR 170 (396)
Q Consensus 163 ~~~~~~~~ 170 (396)
.+...|..
T Consensus 99 rV~~~~~D 106 (459)
T KOG4340|consen 99 RVAFLLLD 106 (459)
T ss_pred HHHHHhcC
Confidence 77776654
No 88
>PF12854 PPR_1: PPR repeat
Probab=98.86 E-value=4e-09 Score=57.91 Aligned_cols=32 Identities=50% Similarity=0.966 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 353 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666655
No 89
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.85 E-value=3.3e-07 Score=85.64 Aligned_cols=230 Identities=20% Similarity=0.158 Sum_probs=144.3
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
|+..|+.+.|- +|.-|.-... |.+-..++.++......++.+.+. .|.+.||..|..+|...|++..
T Consensus 35 Yc~~gdieaat-if~fm~~ksL-pv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 35 YCTKGDIEAAT-IFPFMEIKSL-PVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred HcccCCCcccc-chhhhhcccc-cccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHHHHhccchHH
Confidence 34445666666 7777754433 356677888888877777776554 5778888888888888888655
Q ss_pred HHHHHHHHH-------hcCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 041816 161 GFVVLGRIL-------RSCFTPDAVAF--------------TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219 (396)
Q Consensus 161 a~~~~~~~~-------~~~~~~~~~~~--------------~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 219 (396)
-..+=+.+. ..|+......+ ...+....-.|-++.+++++..+...... ..... ++
T Consensus 102 fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fL 178 (1088)
T KOG4318|consen 102 FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FL 178 (1088)
T ss_pred HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HH
Confidence 222211121 12221111111 11222223334455555555444322111 01111 12
Q ss_pred HHHHh-cCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041816 220 NGLCR-TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298 (396)
Q Consensus 220 ~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 298 (396)
+-+.. ...+++-..+.+...+ .|+..+|..++.+-...|+.+.|..++.+|.+.|++.+.+-|..|+-+
T Consensus 179 rqnv~~ntpvekLl~~cksl~e---------~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g- 248 (1088)
T KOG4318|consen 179 RQNVVDNTPVEKLLNMCKSLVE---------APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG- 248 (1088)
T ss_pred HHhccCCchHHHHHHHHHHhhc---------CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc-
Confidence 22222 2233333333333333 378999999999999999999999999999999998888877777765
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 041816 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 338 (396)
.++...+..++.-|.+.|+.|+..|+...+..+.+.|.
T Consensus 249 --~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 249 --INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred --CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 78888888899999999999999999888888877555
No 90
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=2.2e-06 Score=72.14 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=32.4
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 133 (396)
.+...|++++|+..+..+.+... ++...+-.|.-++.-.|.+.+|..+-.+.
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 45566777777777776665332 45555666666666667777777665554
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.84 E-value=1.1e-06 Score=73.74 Aligned_cols=186 Identities=11% Similarity=0.005 Sum_probs=126.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccC
Q 041816 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV---ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251 (396)
Q Consensus 175 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (396)
.....+..+...+...|++++|...|+++.... +.+. .++..+..++...|++++|...++++.+.. +.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~ 102 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-------PN 102 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-------cC
Confidence 456677778888888899999999998887752 3232 456777888888999999999999988764 22
Q ss_pred CHh---hHHHHHHHHhcc--------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 041816 252 NTV---TYTTIIDGLCKE--------GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320 (396)
Q Consensus 252 ~~~---~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (396)
+.. ++..+..++.+. |++++|.+.|+.+...... +...+..+..... ... ...
T Consensus 103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~----- 166 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA----- 166 (235)
T ss_pred CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH-----
Confidence 222 455555556544 6788888888888765432 2222222211100 000 000
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRG--VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 321 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.....+...|.+.|++++|...+++..+.. .+.....+..+..++.+.|++++|..+++.+...
T Consensus 167 ---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 ---GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011245667889999999999999998752 1224578889999999999999999999988764
No 92
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=7.7e-07 Score=81.60 Aligned_cols=216 Identities=16% Similarity=0.086 Sum_probs=156.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (396)
.-..+...+...|-...|+.+++++. .|..+|.+|+..|+..+|..+..+..+. +|+...|-.+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34456667777788888888887754 3667788888888888888888877773 567777777777766
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
...-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.+ +....+|-.+.-+..+.++
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-------plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-------PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-------ccchhHHHhccHHHHHHhh
Confidence 655567777766654321 22222223344678888888888777664 4566778888888888888
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
+..|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 88888888887765433 56778888888888888888888888888776 44566777777777888888888888877
Q ss_pred HHh
Q 041816 349 MIL 351 (396)
Q Consensus 349 m~~ 351 (396)
+..
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 764
No 93
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.83 E-value=4.3e-05 Score=70.95 Aligned_cols=306 Identities=15% Similarity=0.102 Sum_probs=184.2
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-cCChhHHHHHHHHHHhC--CC--CCCHHhHHHHHHH
Q 041816 77 SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK-TKHYDTVLSLFKRLNST--GL--FPDLYTYNILINC 151 (396)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~--~~--~p~~~~~~~li~~ 151 (396)
.+..+..+|.-..|+.+.+......+.|+++..+-..-..|.+ .+..++++++-.++... +. ......|..+.-+
T Consensus 363 ~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~ 442 (799)
T KOG4162|consen 363 LALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIA 442 (799)
T ss_pred HHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Confidence 3344555566666666666665554333344444333333332 34555555554444331 10 0122223333333
Q ss_pred HHhc-----------CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 152 FCKM-----------GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 152 ~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
|... ....++++.+++..+.+.. |..+.-.+.--|+..++++.|.+...+..+.+-..+...|..+.-
T Consensus 443 y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLAL 521 (799)
T KOG4162|consen 443 YGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLAL 521 (799)
T ss_pred HHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3221 1123455555555554432 333333444456666777777777777777654556777777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCC-------------------------------C------------------------
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGK-------------------------------F------------------------ 245 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~-------------------------------~------------------------ 245 (396)
.+...+++.+|+.+.+......+. +
T Consensus 522 vlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l 601 (799)
T KOG4162|consen 522 VLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL 601 (799)
T ss_pred HHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc
Confidence 777777777766666544322111 0
Q ss_pred --------------------------c-------cccc--CC------HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 041816 246 --------------------------G-------VVCK--PN------TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284 (396)
Q Consensus 246 --------------------------~-------~~~~--~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 284 (396)
+ .... |+ ...|......+.+.++.++|...+.+.....
T Consensus 602 a~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~- 680 (799)
T KOG4162|consen 602 ALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID- 680 (799)
T ss_pred CcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-
Confidence 0 0000 11 1123344555666677777776666665543
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHH
Q 041816 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-VVTFNVIMDELCKNGKMDEASR--LLELMILRGVNPNTSTF 361 (396)
Q Consensus 285 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~ 361 (396)
......|......+...|++++|...|...... .|+ +....++..++.+.|+...|.. ++..+.+.+ +.+...|
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW 757 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAW 757 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHH
Confidence 224555666667777888999999999888764 454 5678899999999998888887 999999873 5588999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 362 STLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 362 ~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
..+...+-+.|+.++|.+.|....+.
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999999999999999999987653
No 94
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=2.3e-06 Score=78.66 Aligned_cols=214 Identities=13% Similarity=0.058 Sum_probs=170.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 041816 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 225 (396)
..+...+...|-...|..+++++. .|.-++.+|...|+.++|..+..+..+. +|+...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 456677788888889988888654 4567788899999999999988887774 67888888888877777
Q ss_pred CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 041816 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 305 (396)
.-+++|.++.+..... +-..+.....+.+++.++.+.|+.-.+.+.- -..+|..+..+..+.++++
T Consensus 471 s~yEkawElsn~~sar-------------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred HHHHHHHHHhhhhhHH-------------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhH
Confidence 7778888887765432 1112222233478999999999987765432 6678888888889999999
Q ss_pred HHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 306 EANCLLIEMMDQGVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
.|.+.|...... .|| ...||.+-.+|.+.|+-.+|...+.+..+.. .-+...|...+....+.|.+++|++.+.+|
T Consensus 537 ~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999988764 455 6789999999999999999999999999986 556778888888899999999999999998
Q ss_pred HhC
Q 041816 385 ESM 387 (396)
Q Consensus 385 ~~~ 387 (396)
.+.
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 763
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=1.2e-06 Score=73.47 Aligned_cols=185 Identities=12% Similarity=-0.023 Sum_probs=108.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCH--H
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD----LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA--V 178 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~ 178 (396)
.....+..+...+.+.|++++|...++++.... |+ ...+..+..++.+.|++++|...++++++..+.... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 455566677777888888888888888877643 32 135666777888888888888888888776432111 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCccccc
Q 041816 179 AFTSLIKGLCAE--------SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250 (396)
Q Consensus 179 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (396)
++..+..++... |+.++|.+.|+++.+.. +-+...+..+..... . ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~------~~~~------------ 165 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----L------RNRL------------ 165 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----H------HHHH------------
Confidence 344445555543 67788888888877653 112222222111100 0 0000
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN--PDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
......+...|.+.|++++|...++...+.... .....+..+..++...|++++|..+++.+..
T Consensus 166 --~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 166 --AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 001123445566667777777777666554321 2345666666777777777777776666654
No 96
>PF12854 PPR_1: PPR repeat
Probab=98.81 E-value=7.4e-09 Score=56.82 Aligned_cols=32 Identities=50% Similarity=0.956 Sum_probs=21.1
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 349 (396)
|+.||..||+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 97
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.78 E-value=2.6e-06 Score=68.84 Aligned_cols=119 Identities=10% Similarity=0.072 Sum_probs=61.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH-HhcCC
Q 041816 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF-CYAND 303 (396)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~~~ 303 (396)
.++.+++...++...+.. +.+...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-------P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-------PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQ 123 (198)
T ss_pred chhHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCC
Confidence 344445555555544443 445555555555555555555555555555554333 444455544432 34444
Q ss_pred --HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 304 --WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 304 --~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
.++|..++++..+.+ +-+...+..+...+.+.|++++|...|+++.+.
T Consensus 124 ~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 124 HMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred CCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 355555555555543 223445555555555556666666666555554
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.77 E-value=2.6e-06 Score=68.95 Aligned_cols=164 Identities=15% Similarity=0.035 Sum_probs=116.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
+... ..+-..+...|+-+....+........ .-|.......+....+.|++.+|...+.+..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3344 445556666677777777766654322 2355556667777888888888888888877665 457888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
+|.+.|++++|..-|.+..+.. .-+....+.+.-.|.-.|+.+.|..++....... ..|..+-..+......
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-------~ad~~v~~NLAl~~~~ 214 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-------AADSRVRQNLALVVGL 214 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-------CCchHHHHHHHHHHhh
Confidence 8888888888888888877763 2356667777777888888888888888877764 4467777777777788
Q ss_pred cCCHHHHHHHHHHHh
Q 041816 266 EGFVDKAKELFLQMK 280 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~ 280 (396)
.|++++|.++...-.
T Consensus 215 ~g~~~~A~~i~~~e~ 229 (257)
T COG5010 215 QGDFREAEDIAVQEL 229 (257)
T ss_pred cCChHHHHhhccccc
Confidence 888888877765543
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.77 E-value=3.1e-06 Score=80.95 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=118.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (396)
.++..+-.|..+..+.|++++|+.+++...+.. || ......+...+.+.+++++|+..+++.++..+. +......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 578899999999999999999999999998854 55 556777888999999999999999999998754 78888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999843 4458889999999999999999999999998764
No 100
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.75 E-value=1.4e-05 Score=74.11 Aligned_cols=255 Identities=14% Similarity=0.078 Sum_probs=186.2
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (396)
..++++.+++.++.++..|++..|- .--|+..++.+.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 4678899999999888766555443 34567778999999999999988656789999999999999999999999998
Q ss_pred HHHhcCCC-------------------CCHHHHHHHHHHHHhc-----------------------CCHHHHHHHHHHH-
Q 041816 167 RILRSCFT-------------------PDAVAFTSLIKGLCAE-----------------------SRIMEAAALFTKL- 203 (396)
Q Consensus 167 ~~~~~~~~-------------------~~~~~~~~l~~~~~~~-----------------------g~~~~a~~~~~~~- 203 (396)
.....-.. -...++..++..+-.. ++..++.+....+
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 87754211 0112222233222200 0111111111111
Q ss_pred -------HhcC----CC-------cc------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHH
Q 041816 204 -------KAFG----CK-------PN------VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259 (396)
Q Consensus 204 -------~~~g----~~-------~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (396)
...| ++ |+ ...|......+.+.+..++|...+.+..... +.....|...
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-------~l~~~~~~~~ 690 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-------PLSASVYYLR 690 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-------hhhHHHHHHh
Confidence 0011 00 11 1235566677888888899988888877764 5677788888
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 041816 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC--LLIEMMDQGVQPDVVTFNVIMDELCKNG 337 (396)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g 337 (396)
...+...|++++|.+.|......++. ++....++...+.+.|+..-|.. ++.++.+.+ +.+...|-.+...+-+.|
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcc
Confidence 88899999999999999999877554 67788999999999999888888 999999875 457889999999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 041816 338 KMDEASRLLELMILR 352 (396)
Q Consensus 338 ~~~~A~~~~~~m~~~ 352 (396)
+.+.|.+.|....+.
T Consensus 769 d~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 769 DSKQAAECFQAALQL 783 (799)
T ss_pred chHHHHHHHHHHHhh
Confidence 999999999988764
No 101
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.75 E-value=2.9e-05 Score=70.65 Aligned_cols=207 Identities=10% Similarity=0.116 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC----------------------ChHHHHHHH
Q 041816 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG----------------------HTIVALNLF 235 (396)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----------------------~~~~a~~~~ 235 (396)
..|.+|.+.|.+.|.+++|..+|++.... ..++.-|+.+.++|+.-. +++-.+.-|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 45677777777777777777777776554 223333333333333211 112223333
Q ss_pred HHHHhcCCCCc--c---cccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC------hhhHHHHHHHHHhcCCH
Q 041816 236 EEMANGNGKFG--V---VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD------VVTYNSLIHGFCYANDW 304 (396)
Q Consensus 236 ~~~~~~~~~~~--~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~li~~~~~~~~~ 304 (396)
+.+.+.....- + .-+.++..|..-+. ...|+..+-...|.+.... +.|. ...|..+.+.|-..|+.
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 33333221000 0 00122233332222 2235566666666666542 2221 23577777888888888
Q ss_pred HHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----------CCC-------CHHHHHHH
Q 041816 305 NEANCLLIEMMDQGVQPD---VVTFNVIMDELCKNGKMDEASRLLELMILRG----------VNP-------NTSTFSTL 364 (396)
Q Consensus 305 ~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----------~~p-------~~~~~~~l 364 (396)
+.|..+|++..+-..+-- ..+|.....+=.++.+++.|+++.+....-. ..| +...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 888888888776432211 3455555566667777888888777665321 111 23455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC
Q 041816 365 MDGFCLTGRVNHAKELFVSMESMGC 389 (396)
Q Consensus 365 i~~~~~~g~~~~A~~~~~~m~~~g~ 389 (396)
++.--..|-++....+|+++.+..+
T Consensus 484 ~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhc
Confidence 6655667788888888888877544
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.74 E-value=4e-06 Score=67.76 Aligned_cols=119 Identities=12% Similarity=0.074 Sum_probs=63.4
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH-HhcCC--hHHH
Q 041816 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL-CRTGH--TIVA 231 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~-~~~g~--~~~a 231 (396)
.++.+++...++..++..+ .+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3444555555555555442 255555555556666666666666666555543 22445555555442 44444 3555
Q ss_pred HHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
.+++++..+.+ +.+..++..+...+.+.|++++|+..|+.+.+.
T Consensus 130 ~~~l~~al~~d-------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-------ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666555554 344555555555555555555555555555544
No 103
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=3.1e-05 Score=69.74 Aligned_cols=300 Identities=16% Similarity=0.107 Sum_probs=166.5
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
..+++++|.+..++++..++. +...+..-+-++.+.++|++|+.+.+.-... ..+..-+-.-.-+..+.+..++|+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHH
Confidence 457799999999999887754 6666666777888899999999665542210 111111112223344778889998
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc---------------------------HHHH
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN---------------------------VITY 215 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~---------------------------~~~~ 215 (396)
..++-.. +.+..+...-...+.+.|++++|..+|+.+.+.+.+-. ..+|
T Consensus 100 k~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 100 KTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY 175 (652)
T ss_pred HHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence 8887222 12344666667788889999999999998865542200 0122
Q ss_pred HHH---HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHh----------hHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 216 STL---INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV----------TYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 216 ~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
..+ .-.+...|++.+|+++++.....+...- ..-|.. .-.-|.-++...|+.++|..++......
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l--~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKL--EDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhh--cccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 222 2235567888888888887744331100 011110 1122334556678888888888887776
Q ss_pred CCCCChhh----HHHHHHHHHhcCCHH----------------HHHHHHHH--------------H-----------H-H
Q 041816 283 NINPDVVT----YNSLIHGFCYANDWN----------------EANCLLIE--------------M-----------M-D 316 (396)
Q Consensus 283 ~~~p~~~~----~~~li~~~~~~~~~~----------------~a~~~~~~--------------~-----------~-~ 316 (396)
... |... -|.|+..-....-++ .++..+.. | . .
T Consensus 254 ~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 254 NPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS 332 (652)
T ss_pred cCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 543 4321 222221110000000 00000000 0 0 0
Q ss_pred -CCCCCCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHH
Q 041816 317 -QGVQPDVVTFNVIMDELCKN--GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV--------SME 385 (396)
Q Consensus 317 -~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~ 385 (396)
.+..|. ..+.+++..+.+. ..+.+|.+++...-+..-.-...+.-.++......|+++.|.+++. .+.
T Consensus 333 lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~ 411 (652)
T KOG2376|consen 333 LPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL 411 (652)
T ss_pred CCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh
Confidence 011121 2233333333221 2356677777766654222235566677788889999999999999 777
Q ss_pred hCCCCCCcc
Q 041816 386 SMGCKHTVF 394 (396)
Q Consensus 386 ~~g~~p~~~ 394 (396)
+.+..|..|
T Consensus 412 ~~~~~P~~V 420 (652)
T KOG2376|consen 412 EAKHLPGTV 420 (652)
T ss_pred hhccChhHH
Confidence 777777654
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.74 E-value=3.1e-06 Score=68.53 Aligned_cols=164 Identities=15% Similarity=0.089 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (396)
|..+ ..+-..+...|+-+....+........ +.|.......+....+.|++..|+..+.+..... ++|...
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-------p~d~~~ 136 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-------PTDWEA 136 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-------CCChhh
Confidence 3444 556666777777777777776644332 3455566667888888888888888888888775 778888
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041816 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335 (396)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 335 (396)
|+.+.-+|.+.|++++|..-|.+..+.... +...++.+...+.-.|+++.|..++......+ .-|...-..+......
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~ 214 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGL 214 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhh
Confidence 888888888888888888888888776444 66677888888888888888888888877654 2356667777778888
Q ss_pred cCCHHHHHHHHHHHH
Q 041816 336 NGKMDEASRLLELMI 350 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~ 350 (396)
.|++++|.++...-.
T Consensus 215 ~g~~~~A~~i~~~e~ 229 (257)
T COG5010 215 QGDFREAEDIAVQEL 229 (257)
T ss_pred cCChHHHHhhccccc
Confidence 888888888765443
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.72 E-value=1.7e-05 Score=76.02 Aligned_cols=162 Identities=10% Similarity=0.041 Sum_probs=115.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCC
Q 041816 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252 (396)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (396)
+..+...+..|.....+.|..++|+.+++...+.. +-+......+...+.+.+++++|+..+++..... +.+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-------p~~ 153 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-------SSS 153 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-------CCC
Confidence 34467788888888888888888888888888763 3346667777888888888888888888888765 556
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 332 (396)
......+..++.+.|++++|..+|+++...+.. +..++..+..++-..|+.++|...|+...+.. .+....|+.++
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~-- 229 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL-- 229 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH--
Confidence 667777777888888888888888888774432 46778888888888888888888888877642 34445555443
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 041816 333 LCKNGKMDEASRLLELMI 350 (396)
Q Consensus 333 ~~~~g~~~~A~~~~~~m~ 350 (396)
+++..-..+++.+.
T Consensus 230 ----~~~~~~~~~~~~~~ 243 (694)
T PRK15179 230 ----VDLNADLAALRRLG 243 (694)
T ss_pred ----HHHHHHHHHHHHcC
Confidence 23333444555444
No 106
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=2.1e-05 Score=66.40 Aligned_cols=287 Identities=15% Similarity=0.112 Sum_probs=169.5
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHhhHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHHH
Q 041816 86 TPNEAFCIFDYMLNMRPSPPPLTSFNL-LFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YTYNILINCFCKMGRVSHGFV 163 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~ 163 (396)
.+++|++++.+++..++ .....|. +.-+|.+..-++-+.++++.-.+. .||. ...|.......+.=+-..|.+
T Consensus 166 HYQeAIdvYkrvL~dn~---ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNP---EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHHhcCh---hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHH
Confidence 47899999999987543 3444444 444667777788888887776653 2443 333333332222211111111
Q ss_pred HH--------------HHHHhcCC------------CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH
Q 041816 164 VL--------------GRILRSCF------------TP-----DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212 (396)
Q Consensus 164 ~~--------------~~~~~~~~------------~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 212 (396)
-. +.+.+.+. -| -+..-..|+-.|.+.+++.+|..+.+++.- .++
T Consensus 241 E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP 316 (557)
T KOG3785|consen 241 EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTP 316 (557)
T ss_pred HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC----CCh
Confidence 11 11112110 00 112223445567788999999988877642 233
Q ss_pred HHHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC
Q 041816 213 ITYSTLINGLCRTG-------HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285 (396)
Q Consensus 213 ~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 285 (396)
.-|-.-.-.++..| ...-|.+.|+-.-..+. ...++..-.++...+.-..++++.+-.++.+...-..
T Consensus 317 ~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~-----ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N 391 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL-----ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN 391 (557)
T ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 32322222223333 34455566655544431 1223344556666677777889998888888765444
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-H
Q 041816 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF-NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS-T 363 (396)
Q Consensus 286 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ 363 (396)
|...--.+.++++..|.+.+|+++|-.+....++ |..+| ..|.++|.+.++++.|..++-++.. +.+..+.- .
T Consensus 392 -dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLql 466 (557)
T KOG3785|consen 392 -DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQL 466 (557)
T ss_pred -cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHH
Confidence 4444445788999999999999999887654433 44555 5567888999999998887765542 22333333 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041816 364 LMDGFCLTGRVNHAKELFVSMESMGCKH 391 (396)
Q Consensus 364 li~~~~~~g~~~~A~~~~~~m~~~g~~p 391 (396)
+..-|.+.+.+--|-+.|+.++..+..|
T Consensus 467 IAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 467 IANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 4457788899988999999988765333
No 107
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.71 E-value=2.7e-05 Score=70.84 Aligned_cols=292 Identities=13% Similarity=0.062 Sum_probs=197.0
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 164 (396)
+++...+...+.+++..+.. ..+.....-.+...|+-++|.+......+..+. +.+.|..+.-.+....++++|+..
T Consensus 21 kQYkkgLK~~~~iL~k~~eH--geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEH--GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHhHHHHHHHHHHhCCcc--chhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 45677777777777765553 344444444566779999999999988876543 677888888888888999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 041816 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 244 (396)
|...+..+.. |..++.-+.-.-+..|+++.......++.+.. +.....|..+..++.-.|+...|..++++..+...
T Consensus 98 y~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~- 174 (700)
T KOG1156|consen 98 YRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN- 174 (700)
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 9999988744 78888888888888899998888888877753 33566788889999999999999999999887652
Q ss_pred CcccccCCHhhHHHHH------HHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041816 245 FGVVCKPNTVTYTTII------DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318 (396)
Q Consensus 245 ~~~~~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (396)
..|+...+.... ......|..++|.+.+..-...-+. ....-..-...+.+.+++++|..++..++..+
T Consensus 175 ----~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 175 ----TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred ----cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 135665554433 3345678888888877665543211 22333445567788999999999999999864
Q ss_pred CCCCHhhHHHH-HHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041816 319 VQPDVVTFNVI-MDELCKNGKMDEAS-RLLELMILRGVNPNTSTFSTL-MDGFCLTGRVNHAKELFVSMESMGCKH 391 (396)
Q Consensus 319 ~~p~~~~~~~l-~~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p 391 (396)
||..-|... ..++.+..+.-++. .+|....+. .|....-..+ +.......-.+..-+++..+.+.|+.+
T Consensus 250 --Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 250 --PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred --chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 776655544 44444344444444 666666553 1211111111 111112222334445666677777654
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.71 E-value=9.1e-06 Score=78.73 Aligned_cols=225 Identities=11% Similarity=0.089 Sum_probs=116.2
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHH
Q 041816 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178 (396)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 178 (396)
....|.+...|..|+..+...+++++|.++.+...+.. |+.. .|..+...+.+.++..++..+ .
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~----------- 88 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--N----------- 88 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--h-----------
Confidence 33455788889999999999999999999999777643 4443 333333356666665554443 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHH
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (396)
++.......++..+..+...|.+.+ -+..++..+..+|-+.|+.++|..+|+++.+.+ +.|..+.|.
T Consensus 89 ----~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn 155 (906)
T PRK14720 89 ----LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKK 155 (906)
T ss_pred ----hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHH
Confidence 2222222233333333333333322 233344455555555555555555555555543 344455555
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------CC
Q 041816 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-------------------GV 319 (396)
Q Consensus 259 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------------------~~ 319 (396)
+.-.|... +.++|.+++.+.... +...+++.++..+|.++... |.
T Consensus 156 ~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 156 LATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhcc
Confidence 55555555 555555555444332 22222333333333333221 11
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041816 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369 (396)
Q Consensus 320 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 369 (396)
.--..++-.+...|-..++++++..+++.+.+.. +-|.....-++..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 1223344445556666667777777777776652 235555555555554
No 109
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.70 E-value=0.0001 Score=67.29 Aligned_cols=206 Identities=14% Similarity=0.099 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----Ccccc
Q 041816 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN---VITYSTLINGLCRTGHTIVALNLFEEMANGNGK-----FGVVC 249 (396)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~ 249 (396)
..|..+.+.|-..|+++.|..+|++..+-..+.- ..+|.....+=.+..+.+.|+++.+........ +....
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 3566777778888888888888888776532211 345666666666777888888887776543211 00001
Q ss_pred c------CCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 041816 250 K------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323 (396)
Q Consensus 250 ~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 323 (396)
+ .+...|...+..--..|-++....+|+.+.+..+. ++.........+-.+.-++++.+++++-+..--.|+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 1 23345666677666778889999999999876554 4443333333444556677777777665544333443
Q ss_pred -hhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHH
Q 041816 324 -VTFNVIMDELCK---NGKMDEASRLLELMILRGVNPNTSTFSTLM--DGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 324 -~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~ 385 (396)
..|+..+.-+.+ ...++.|..+|++.++ |.+|...-+--|+ ..=-+.|....|+.++++..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 355555555443 2357788888888887 5655432222221 11134577777777777754
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.69 E-value=4.3e-05 Score=77.54 Aligned_cols=276 Identities=12% Similarity=-0.022 Sum_probs=174.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC------CCCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC----HH
Q 041816 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGL------FPDL--YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD----AV 178 (396)
Q Consensus 111 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~ 178 (396)
......+...|+++++..++......-- .+.. .....+...+...|++++|...+++..+.....+ ..
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3444555678999999999988754210 1111 1222233455678999999999998876322222 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCccc-ccCC
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAF----GCK-PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV-CKPN 252 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ 252 (396)
..+.+...+...|++++|...+++.... |.. ....++..+...+...|++++|...+++........+.. ....
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4456667778899999999999887643 211 112345566778889999999999998876532111100 0112
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhC----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHh--
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDK----NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG--VQPDVV-- 324 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~-- 324 (396)
...+..+...+...|++++|...+++.... +.......+..+...+...|++++|...+.++.... ......
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 334555666777889999999999887542 111123345556677889999999999998875421 111110
Q ss_pred hH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 325 TF--NVIMDELCKNGKMDEASRLLELMILRGVNPN---TSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 325 ~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
.. ...+..+...|+.+.|...+........... ...+..+..++...|+.++|...+++...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 10 1122445568999999999877654211111 11234566778899999999999998765
No 111
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=3.6e-05 Score=62.53 Aligned_cols=140 Identities=17% Similarity=0.116 Sum_probs=71.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHH
Q 041816 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262 (396)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 262 (396)
-...|++.|++++|++...... +......=+..+.+..+.+.|.+.+++|.+.. +..+.+-|..+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---------ed~tLtQLA~a 178 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---------EDATLTQLAQA 178 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---------hHHHHHHHHHH
Confidence 3445556666666666555411 22233333444555556666666666665543 33444444444
Q ss_pred Hhc----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 041816 263 LCK----EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338 (396)
Q Consensus 263 ~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 338 (396)
+.+ .+.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|..++++..... .-+..+...++-+-...|.
T Consensus 179 wv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 179 WVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence 332 34556666666666543 34455555666666666666666666666665543 2234444444444344443
Q ss_pred H
Q 041816 339 M 339 (396)
Q Consensus 339 ~ 339 (396)
.
T Consensus 257 d 257 (299)
T KOG3081|consen 257 D 257 (299)
T ss_pred C
Confidence 3
No 112
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=4.1e-05 Score=62.25 Aligned_cols=243 Identities=15% Similarity=0.118 Sum_probs=120.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-H
Q 041816 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA-A 198 (396)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~ 198 (396)
.|.+..++..-....... -+...-..+.++|...|.+..... ++.... .|.......+.......++.+.-. +
T Consensus 21 ~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred hhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 355555555444433221 233333344555555555443322 222211 223333333333333333333322 3
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041816 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278 (396)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 278 (396)
+.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+++-|.+.++.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444333223232333333445666777777766666521 122333333444555666777777777
Q ss_pred HhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041816 279 MKDKNINPDVVTYNSLIHGFCY----ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354 (396)
Q Consensus 279 m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 354 (396)
|.... +..|.+.|..++.+ .+.+..|.-+|++|-++ ..|+..+.+....++...|++++|..++++...+.
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 76542 55555555555532 34566677777776553 35666666666667777777777777777766652
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 041816 355 NPNTSTFSTLMDGFCLTGRVNH-AKELFVSME 385 (396)
Q Consensus 355 ~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~ 385 (396)
.-++.+...+|..-...|...+ ..+.+.++.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 3355555555555555554433 233444444
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.64 E-value=5e-06 Score=63.58 Aligned_cols=119 Identities=10% Similarity=-0.060 Sum_probs=92.2
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 041816 92 CIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 171 (396)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 171 (396)
.+|++.++..| ..+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|...|+...+.
T Consensus 14 ~~~~~al~~~p-----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSVDP-----ETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHcCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45666655432 235556778888999999999999988765 347778888999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH
Q 041816 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218 (396)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 218 (396)
.+ .+...+..+..++...|++++|+..|++..+.. +.+...|...
T Consensus 88 ~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~ 132 (144)
T PRK15359 88 DA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIR 132 (144)
T ss_pred CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 64 478888889999999999999999999988764 2244444433
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=6e-06 Score=63.12 Aligned_cols=91 Identities=10% Similarity=-0.050 Sum_probs=41.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 041816 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 227 (396)
+...+...|++++|...|+......+. +...+..+..++.+.|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 334444444444444444444443321 44444444444444444444444444444432 2234444444444444444
Q ss_pred hHHHHHHHHHHHh
Q 041816 228 TIVALNLFEEMAN 240 (396)
Q Consensus 228 ~~~a~~~~~~~~~ 240 (396)
+++|...|+....
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=4.1e-05 Score=67.60 Aligned_cols=231 Identities=13% Similarity=0.058 Sum_probs=133.3
Q ss_pred hhHHHHHHHHHHh---cCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhH
Q 041816 87 PNEAFCIFDYMLN---MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG--LFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 87 ~~~A~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
+..-.+.|+++.. .+..+|.- ++.-=.-..++.++...-+.++..+ -.|+...+...+.+......-..+
T Consensus 219 p~gM~~ff~rl~~~~~~~~~~p~y-----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~ 293 (484)
T COG4783 219 PQGMPEFFERLADQLRYGGQPPEY-----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQA 293 (484)
T ss_pred chhHHHHHHHHHHHHhcCCCCChH-----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccch
Confidence 4445577777763 33332221 1111112244555555555654332 124445555555544443333333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
..++.+..+. .-...-|. ..-.+...|++++|+..++.+...- +-|...+......+.+.++.++|.+.++++...
T Consensus 294 ~~~~~~~~~~--~~~aa~YG-~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l 369 (484)
T COG4783 294 ADLLAKRSKR--GGLAAQYG-RALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL 369 (484)
T ss_pred HHHHHHHhCc--cchHHHHH-HHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 3333333221 11222232 2233445677788888887777652 345666666777777888888888888877775
Q ss_pred CCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 041816 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 321 (396)
. +.....+-.+..+|.+.|++.+|+++++........ |+..|..|.++|...|+..++..-..+....
T Consensus 370 ~-------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~---- 437 (484)
T COG4783 370 D-------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEGYAL---- 437 (484)
T ss_pred C-------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHHHHh----
Confidence 4 333566667777778888888888887777766544 7777888888888888777777777666543
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 322 DVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
.|+++.|...+....+.
T Consensus 438 --------------~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 438 --------------AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred --------------CCCHHHHHHHHHHHHHh
Confidence 25556666665555554
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=4.1e-05 Score=67.57 Aligned_cols=214 Identities=15% Similarity=0.033 Sum_probs=147.2
Q ss_pred ChhHHHHHHHHHH---hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 041816 122 HYDTVLSLFKRLN---STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC--FTPDAVAFTSLIKGLCAESRIMEA 196 (396)
Q Consensus 122 ~~~~a~~~~~~~~---~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 196 (396)
+.....++|+++. ..+-.|+.+..+. =.-..++.++...-+.+...+ -.|+.......+........-..+
T Consensus 218 dp~gM~~ff~rl~~~~~~~~~~p~yl~TH----Plp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~ 293 (484)
T COG4783 218 DPQGMPEFFERLADQLRYGGQPPEYLLTH----PLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQA 293 (484)
T ss_pred CchhHHHHHHHHHHHHhcCCCCChHHhcC----CCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccch
Confidence 3455677888886 3343444432221 112234444444445544321 234555566666554444333333
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041816 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276 (396)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 276 (396)
-.++.+..+ +.....+--....+...|+.++|+..++.+.... |.|...+......+.+.++.++|.+.+
T Consensus 294 ~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-------P~N~~~~~~~~~i~~~~nk~~~A~e~~ 363 (484)
T COG4783 294 ADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-------PDNPYYLELAGDILLEANKAKEAIERL 363 (484)
T ss_pred HHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 333333332 1223334444556778899999999999988874 667778888899999999999999999
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 277 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
+.+...... .....-.+..++.+.|++.+|..+++...... +-|...|..|..+|...|+..++.....++..
T Consensus 364 ~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 364 KKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999987433 36677788899999999999999999988763 66889999999999999999999998888764
No 117
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00019 Score=64.82 Aligned_cols=117 Identities=20% Similarity=0.107 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 041816 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI--------EMMDQGVQPDVVTFNVIMDELCKNGKMD 340 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 340 (396)
+..+.+++...-+....-.....-.+++.....|+++.|.+++. .+.+.+..|. +...++..+.+.++-+
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDND 434 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCc
Confidence 33444444444333222223444555666677788888887777 4444333343 3344555566666666
Q ss_pred HHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 341 EASRLLELMILR--GVNPN----TSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 341 ~A~~~~~~m~~~--g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.|..++.+.+.. .-.+. ..++.-+...-.+.|+.++|..+++++.+.
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 666666555532 00111 122222333334567777777777777663
No 118
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=1.4e-05 Score=65.83 Aligned_cols=261 Identities=13% Similarity=0.126 Sum_probs=180.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHH-HHHHHH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS-LIKGLC 188 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 188 (396)
+...+..+.+..++++|++++....++. +.+......+..+|....++..|-..++++-... |...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 6677777888899999999999887765 2277788889999999999999999999998763 44554443 345667
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH--HHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLING--LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
+.+.+.+|+++...|.+. ++...-..-+.+ ....+++..+..++++....+ +..+.+...-...+.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---------~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---------EADGQINLGCLLYKE 157 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---------ccchhccchheeecc
Confidence 889999999999888753 333222222232 345788888888888876433 445555566667789
Q ss_pred CCHHHHHHHHHHHhh-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCHhh-------
Q 041816 267 GFVDKAKELFLQMKD-KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ-------------PDVVT------- 325 (396)
Q Consensus 267 g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------p~~~~------- 325 (396)
|++++|.+-|+...+ .|.. ....|+..+..| +.+++..|++...+++++|++ ||+..
T Consensus 158 gqyEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 999999999999876 4555 566788777655 678999999999999998764 22211
Q ss_pred -HHHHH-------HHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 326 -FNVIM-------DELCKNGKMDEASRLLELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 326 -~~~l~-------~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
-+.++ ..+.+.|+++.|.+.+-.|--+ .-..|++|...+.-.- ..|++-+..+-+.-+...+
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC
Confidence 12233 3345678888888888777532 2344777776653222 2345555555555555443
No 119
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.54 E-value=0.00051 Score=65.20 Aligned_cols=224 Identities=15% Similarity=0.182 Sum_probs=155.7
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGC--LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 159 (396)
+..+++..|++..+++.+..|..+ |..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|.+.++.+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 455679999999999998776533 3334444 46789999999999988776644 8889999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC----------ChH
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG----------HTI 229 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----------~~~ 229 (396)
+|..+|++..+. .|+......+..+|.+.+++.+-.+.--++-+. .+-+...+-++++.+...- -..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999876 456777778888899988876544443333332 2345555555665555422 123
Q ss_pred HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHH-HHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 041816 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL-QMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308 (396)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 308 (396)
-|.+.++.+.+.++.. -+..-...-.......|++++|.+++. ...+.-..-+...-+.-+..+...++|.+..
T Consensus 172 LA~~m~~~~l~~~gk~-----~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKI-----ESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred HHHHHHHHHhccCCcc-----chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 4666777776654211 122222223334556788999999994 4444433345555567778888999999999
Q ss_pred HHHHHHHHCC
Q 041816 309 CLLIEMMDQG 318 (396)
Q Consensus 309 ~~~~~~~~~~ 318 (396)
++-.++...|
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 9999999876
No 120
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.54 E-value=0.00031 Score=59.39 Aligned_cols=297 Identities=13% Similarity=0.070 Sum_probs=200.2
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------------HHh--H
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLT-SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD------------LYT--Y 145 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~------------~~~--~ 145 (396)
|+.-|+-..|+.-+.+.++..| |.. .--.-...+.++|.+++|..-|+..++.....+ ... .
T Consensus 82 yLAmGksk~al~Dl~rVlelKp---DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l 158 (504)
T KOG0624|consen 82 YLAMGKSKAALQDLSRVLELKP---DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVL 158 (504)
T ss_pred HhhhcCCccchhhHHHHHhcCc---cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHH
Confidence 4555666666666666666432 221 222234457788999999999998887642111 111 1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 041816 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 225 (396)
...+..+...|+...|++....+++.. +.|...+..-..+|...|++..|+.=++...+.. ..+..++--+-..+...
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhh
Confidence 223445567789999999999999875 4588889999999999999999998887776654 33566777788888999
Q ss_pred CChHHHHHHHHHHHhcCCCCcccccCCHhhHHH-----------H--HHHHhccCCHHHHHHHHHHHhhCCCCCChhh--
Q 041816 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT-----------I--IDGLCKEGFVDKAKELFLQMKDKNINPDVVT-- 290 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l--i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-- 290 (396)
|+.+.++...++..+.+ ||...+-. | +......++|.++.+-.+...+.........
T Consensus 237 gd~~~sL~~iRECLKld--------pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~ 308 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLD--------PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYN 308 (504)
T ss_pred hhHHHHHHHHHHHHccC--------cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeee
Confidence 99999999999988854 44432211 1 2234456788888888888776654423333
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--
Q 041816 291 -YNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD-- 366 (396)
Q Consensus 291 -~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-- 366 (396)
+..+-.++...+++.+|+..-.++.+. .|| +.++.--..+|.-..+++.|+.-|+...+.. +.+...-..+=.
T Consensus 309 ~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n-~sn~~~reGle~Ak 385 (504)
T KOG0624|consen 309 GFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN-ESNTRAREGLERAK 385 (504)
T ss_pred eeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 344556677888999999999999874 454 7888888999999999999999999888742 112221111111
Q ss_pred ---------------HHHhcCCHHHHHHHHHHHHhCCCCCCcc
Q 041816 367 ---------------GFCLTGRVNHAKELFVSMESMGCKHTVF 394 (396)
Q Consensus 367 ---------------~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 394 (396)
+--+.-.-.+..+.|++|-.. +.||..
T Consensus 386 rlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqk-WHPDNF 427 (504)
T KOG0624|consen 386 RLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQK-WHPDNF 427 (504)
T ss_pred HHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHh-cCCccc
Confidence 112333456677778887653 566653
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=0.00019 Score=58.11 Aligned_cols=186 Identities=12% Similarity=0.078 Sum_probs=113.5
Q ss_pred ChhHHHHHHHHHHh---CC-CCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041816 122 HYDTVLSLFKRLNS---TG-LFPDLY-TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196 (396)
Q Consensus 122 ~~~~a~~~~~~~~~---~~-~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 196 (396)
+.++.++++.++.. .| ..++.. .|..++-+....|+.+.|..+++.+...- +-+..+-..-.-.+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 44555555555532 12 334433 34445556666777777777777766553 22222222222334456777778
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041816 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276 (396)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 276 (396)
+++++.+.+.+ +.|.+++..-+...-..|+.-+|++-+....+. +..|...|.-+.+.|...|++++|.-.+
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-------F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-------FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 88887777765 446666666666666677777777777777665 4677778888888888888888888888
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 041816 277 LQMKDKNINPDVVTYNSLIHGFCYAN---DWNEANCLLIEMMDQ 317 (396)
Q Consensus 277 ~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~ 317 (396)
+++.-..+. ++..+..+...+...| +++-+.++|.+..+.
T Consensus 178 EE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 178 EELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 877654322 4444455554443333 455677777777664
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=5.5e-05 Score=73.52 Aligned_cols=222 Identities=11% Similarity=0.052 Sum_probs=113.4
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
+...+++++|+++.+...+..|. ....|-.+...+.+.++.+++..+ .+.. ......++..
T Consensus 41 ~~~~~~~deai~i~~~~l~~~P~--~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~~~~~~~~~~ 101 (906)
T PRK14720 41 YKSENLTDEAKDICEEHLKEHKK--SISALYISGILSLSRRPLNDSNLL--NLID---------------SFSQNLKWAI 101 (906)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCc--ceehHHHHHHHHHhhcchhhhhhh--hhhh---------------hcccccchhH
Confidence 44567899999999988886654 445555555567777776666555 2222 1111122211
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
...+...+...+ -+..++..+..+|-+.|+.++|..+|+++.+.. +-|..+.|.+...|... ++++|+.++.+...
T Consensus 102 ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 102 VEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 122222222211 123344445555555555555555555555544 33444555555555555 55555555554443
Q ss_pred cCCCCcccccCCHhhHHHHHHHH-----hccCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 241 GNGKFGVVCKPNTVTYTTIIDGL-----CKEGFVDKAKELFLQMKDK-NINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
.. -+..-|+.+.... ....+++.-..+.+.+... |..--..++.-+-..|-..++|+++..+++.+
T Consensus 178 ~~--------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 178 RF--------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred HH--------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 21 0000111111100 1112333333444444332 22234456666777788888999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHH
Q 041816 315 MDQGVQPDVVTFNVIMDELC 334 (396)
Q Consensus 315 ~~~~~~p~~~~~~~l~~~~~ 334 (396)
.+.. +-|.....-++.+|.
T Consensus 250 L~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 250 LEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HhcC-CcchhhHHHHHHHHH
Confidence 8864 335566667777765
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.45 E-value=1.4e-05 Score=60.56 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=81.2
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 041816 93 IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172 (396)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 172 (396)
.++.++...+. +......+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|..+++...+.+
T Consensus 5 ~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE--QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555554443 45556667777788888888888888887754 3366777778888888888888888888877765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041816 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (396)
+.+...+..+...+...|++++|.+.|++..+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 336677777778888888888888888887775
No 124
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=0.00011 Score=68.87 Aligned_cols=249 Identities=14% Similarity=0.112 Sum_probs=127.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 164 (396)
|-.++|+.++++..+ |..|-..|...|.|++|.++-+.-.+.. -..||.....-+...++.+.|++.
T Consensus 814 gMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred hhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHH
Confidence 345666666666543 3334445555677777766655432221 223455555555566666666666
Q ss_pred HHHHHh----------cCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 041816 165 LGRILR----------SCF---------TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 165 ~~~~~~----------~~~---------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 225 (396)
|++.-. ..+ ..|...|.--...+-..|+.|.|+.+|...++ |..+++..|-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 653211 100 01222222222223334455555555544332 34444555555
Q ss_pred CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---
Q 041816 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN--- 302 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--- 302 (396)
|+.++|-++-++ .-|....-.|.+.|...|++.+|...|-+... +...|+.|-.++
T Consensus 952 Gk~~kAa~iA~e------------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 952 GKTDKAARIAEE------------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKD 1010 (1416)
T ss_pred cCchHHHHHHHh------------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHH
Confidence 555555554443 23566777788888888888888888766542 223333222111
Q ss_pred ------------CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCC--CCCHHH
Q 041816 303 ------------DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE--------LMILRGV--NPNTST 360 (396)
Q Consensus 303 ------------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~g~--~p~~~~ 360 (396)
+.-.|-++|++. |. -+...+..|-+.|.+.+|+++-= +++...+ ..|+..
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 222222333221 11 12334556778888888776531 1222222 336677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 361 FSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 361 ~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
.+.-.+.++...++++|..++-..
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 777777777777777777766544
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.44 E-value=1.6e-05 Score=60.24 Aligned_cols=92 Identities=18% Similarity=0.099 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHH
Q 041816 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261 (396)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 261 (396)
.+...+...|++++|...|+.+...+ +.+...|..+...+.+.|++++|...++...... +.+...+..+..
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~ 93 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-------PDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCChHHHHHHHH
Confidence 33333444444444444444443332 2233334444444444444444444444443332 223333333444
Q ss_pred HHhccCCHHHHHHHHHHHhh
Q 041816 262 GLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~~ 281 (396)
.|...|++++|...|+...+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444433
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.44 E-value=4.8e-07 Score=50.38 Aligned_cols=34 Identities=47% Similarity=0.776 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 041816 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393 (396)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 393 (396)
+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 5777777788888888888888888777777763
No 127
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.39 E-value=5.7e-05 Score=67.12 Aligned_cols=125 Identities=19% Similarity=0.184 Sum_probs=104.4
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 041816 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334 (396)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 334 (396)
....|+..+...++++.|..+|+++.+.. |+ ....+++.+...++..+|.+++.+..+.. +-+......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34556667777899999999999999874 33 55668888888899999999999998653 446777777888899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 335 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
+.++.+.|+++.+++... .+-+..+|..|..+|...|++++|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999986 34456799999999999999999999998775
No 128
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=0.00011 Score=68.78 Aligned_cols=249 Identities=15% Similarity=0.105 Sum_probs=152.6
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-C--------CCCCHHhHHHHHHH
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-G--------LFPDLYTYNILINC 151 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~p~~~~~~~li~~ 151 (396)
|+.-|+.+.|.+-.+.+ .+...|..+...|.+..+.+-|.-.+-.|... | -.++ .+=.-+.-.
T Consensus 738 yvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 66778899998887776 35578999999999988888777666555321 1 1122 222223333
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHH
Q 041816 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a 231 (396)
..+.|.+++|+.+|.+-.+. ..|=..|-..|.+++|.++-+.=.+..+ ..||.....-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHH
Confidence 45778899999999887643 3455567778999999888765333222 24555566666667888888
Q ss_pred HHHHHHHHhcCCCC-----------c--ccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041816 232 LNLFEEMANGNGKF-----------G--VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298 (396)
Q Consensus 232 ~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 298 (396)
++.|++........ . .--..|...|.-........|+.+.|+.+|....+ |.++++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 88877643211000 0 00012333444444445556666666666655442 45566666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041816 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 373 (396)
|-.|+.++|-.+-++- -|....-.|.+.|-..|++.+|..+|.+.. ++...|+.|-.++.
T Consensus 949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~ 1008 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDM 1008 (1416)
T ss_pred eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCH
Confidence 6677777776665542 244455567778888888888888887664 34555555544433
No 129
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.38 E-value=0.0016 Score=58.52 Aligned_cols=131 Identities=12% Similarity=0.162 Sum_probs=90.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 041816 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP-DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332 (396)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 332 (396)
.+|..++..-.+..-++.|..+|.+..+.+..+ ++..+++++..+| .++.+-|.++|+--++. ..-+..--...++-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 456666777777777888888888887766665 6666777777665 46777888888765543 11222333556667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 333 LCKNGKMDEASRLLELMILRGVNPN--TSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 333 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
+...++-..|..+|++....++.++ ..+|..+++-=..-|+...+.++-+++..
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7777888888888888887755544 46788888777777888888777766653
No 130
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.0009 Score=64.46 Aligned_cols=84 Identities=13% Similarity=0.233 Sum_probs=42.9
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 332 (396)
...|+.+..+-.+.|...+|++-|-+.- |+..|..+++...+.|.|++-.+++....+..-.|... +.|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 3455555555555555555555442221 44555556666666666665555555555444333332 245555
Q ss_pred HHhcCCHHHHHH
Q 041816 333 LCKNGKMDEASR 344 (396)
Q Consensus 333 ~~~~g~~~~A~~ 344 (396)
|++.+++.+.++
T Consensus 1176 yAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1176 YAKTNRLTELEE 1187 (1666)
T ss_pred HHHhchHHHHHH
Confidence 555555544433
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.35 E-value=2.3e-05 Score=69.54 Aligned_cols=121 Identities=12% Similarity=0.060 Sum_probs=63.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 041816 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 227 (396)
++..+...++++.|.++++++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+......-...+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3444444555666666666655543 22 22234555555555555555555555432 2344444444455555566
Q ss_pred hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 041816 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280 (396)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 280 (396)
.+.|+.+.+++.+.. |.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 250 ~~lAL~iAk~av~ls-------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS-------PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666655542 3344456666666666666666655555544
No 132
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.35 E-value=1e-06 Score=48.63 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041816 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391 (396)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 391 (396)
.+|+.++.+|.+.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00052 Score=55.62 Aligned_cols=189 Identities=14% Similarity=0.083 Sum_probs=140.8
Q ss_pred cCChhHHHHHHHHHHhcCCC---CCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCh
Q 041816 84 AITPNEAFCIFDYMLNMRPS---PPPL-TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-TYNILINCFCKMGRV 158 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~---~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~ 158 (396)
..++++.++++..++..... .++. ..|..++-+....|+.+.|...++++...- |... .-..-.-.+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 34689999999988754332 1333 245566667778899999999999987753 4333 222222235567999
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
++|+++++.+++.+ +.|..++-.-+...-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999987 447777777777777788888888888877765 4669999999999999999999999999999
Q ss_pred HhcCCCCcccccCCHhhHHHHHHHHhcc---CCHHHHHHHHHHHhhCC
Q 041816 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKE---GFVDKAKELFLQMKDKN 283 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~ 283 (396)
.-.. |-+...+..+...+.-. .+...+.+.|.+..+..
T Consensus 181 ll~~-------P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ-------PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8864 45555666666655443 46778889999888764
No 134
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00027 Score=67.81 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=75.0
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
+.++-+++|+.+|+... .+....+.|+.- -+..+.|.++-++.. .+..|..+..+-.+.|.+.+|
T Consensus 1059 i~~~LyEEAF~ifkkf~------~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD------MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred hhhhHHHHHHHHHHHhc------ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 34455788888888752 233344444432 244555555544432 344566677766666666666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 041816 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
++-|-+. .|+..|.-+++...+.|.+++-.+++...++..-.|.+ -+.|+-+|++.++..+..++
T Consensus 1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHH
Confidence 6555332 25566666777777777777777766666655444443 34566666666666554443
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.28 E-value=8.2e-05 Score=57.08 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=95.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHHH
Q 041816 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD---VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV--VTFNV 328 (396)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~ 328 (396)
..|..++..+ ..++...+.+.++.+...... + ....-.+...+...|++++|...|+.+......|+. ...-.
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4555566655 488999999999999886432 2 233344567788999999999999999987633322 24455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 329 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
+...+...|++++|+..++..... ......+....+.|.+.|+.++|...|++.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788899999999999999775443 345567778889999999999999999864
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=0.00011 Score=56.35 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCC---HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC--
Q 041816 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN---TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD-- 287 (396)
Q Consensus 213 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-- 287 (396)
..|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+........|+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~ 84 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK 84 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH
Confidence 3455555555 4778888888888888765 223 23344456778888999999999998887653332
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349 (396)
Q Consensus 288 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 349 (396)
......+...+...|++++|+..++..... ......+....+.|.+.|+.++|...|+..
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 234455677788889999999888664332 234456677788888999999999888764
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=2.5e-06 Score=47.36 Aligned_cols=31 Identities=45% Similarity=0.839 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 041816 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321 (396)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 321 (396)
|+.+|.+|++.|++++|.++|.+|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3444444444444444444444444444433
No 138
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=0.00097 Score=59.78 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=41.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 298 (396)
.+.+.+.|++..|+..|.++.... |.|...|.....+|.+.|.+..|++--+...+.+.. ....|..=..++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al 436 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-------PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAAL 436 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHH
Confidence 334445555555555555555543 444555555555555555555555544444443211 222232223333
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 041816 299 CYANDWNEANCLLIEMMD 316 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~ 316 (396)
....+|++|.+.|.+..+
T Consensus 437 ~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 437 RAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333445555555555444
No 139
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.21 E-value=0.0012 Score=63.60 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=67.1
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH--HHHHHHh
Q 041816 77 SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI--LINCFCK 154 (396)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~--li~~~~~ 154 (396)
.|..+..+++..+|+.-|+...+..| .|...|..+..+|...|++..|+++|++.... .|+. +|.. ....-+.
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dP--kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDP--KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECD 642 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCc--hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHH
Confidence 67889999999999999999988665 59999999999999999999999999988764 3432 2222 2223445
Q ss_pred cCChhhHHHHHHHHH
Q 041816 155 MGRVSHGFVVLGRIL 169 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~ 169 (396)
.|++.+|+..+....
T Consensus 643 ~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 643 NGKYKEALDALGLII 657 (1238)
T ss_pred hhhHHHHHHHHHHHH
Confidence 677777666666554
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.20 E-value=2.9e-06 Score=46.76 Aligned_cols=32 Identities=34% Similarity=0.575 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041816 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNP 356 (396)
Q Consensus 325 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 356 (396)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 141
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.17 E-value=0.00056 Score=65.68 Aligned_cols=217 Identities=16% Similarity=0.079 Sum_probs=134.0
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 236 (396)
+...|+..|-+..+.... -...|..|...|...-+...|.+.|++..+.. ..+...+......|+...++++|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 355555555555554322 35567778888887778888888888887764 3466777888888888888888888744
Q ss_pred HHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
...+... ...-...|....-.|.+.++...|..-|+......+. |...|..+..+|...|.+..|.++|.++..
T Consensus 551 ~~~qka~-----a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 551 RAAQKAP-----AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHhhhch-----HHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 4333221 0011122333445567778888888888888776655 777888888888888888888888887766
Q ss_pred CCCCCCHhhHHHH--HHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 317 QGVQPDVVTFNVI--MDELCKNGKMDEASRLLELMILR------GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 317 ~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
. .|+. +|... .-.-+..|++.+|...++..+.. +..--..++-.+...+...|-...|.+++++-
T Consensus 625 L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 625 L--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred c--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3 3432 22222 22345667888888777766542 11112233333333344445444555555443
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.16 E-value=0.0032 Score=60.04 Aligned_cols=223 Identities=13% Similarity=0.130 Sum_probs=154.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 041816 118 AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC--FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195 (396)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (396)
...+++.+|++...++.+.. |+.. |..++.+ ..+.|+.++|..+++.....+.. |..+...+-.+|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 45688999999999987753 5554 4444454 46889999999999888776655 88999999999999999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccC-C------
Q 041816 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG-F------ 268 (396)
Q Consensus 196 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~------ 268 (396)
|..+|++.... .|+......+..+|.+.+.+.+-.+.--++-+. .+.+...+-.+++.+.+.- .
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-------~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-------FPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCcccchHHHHHHHHHHhccCCccccc
Confidence 99999999876 567777777888888888776544444343333 3455666666666665431 1
Q ss_pred ---HHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041816 269 ---VDKAKELFLQMKDKN-INPDVVTYNSLIHGFCYANDWNEANCLL-IEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343 (396)
Q Consensus 269 ---~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 343 (396)
..-|.+.++.+.+.+ .--+..=.......+...|.+++|..++ ....+.-..-+...-+.-++.+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 234556666666543 1112222222233445678899999998 34444433444555567778888899999999
Q ss_pred HHHHHHHhCC
Q 041816 344 RLLELMILRG 353 (396)
Q Consensus 344 ~~~~~m~~~g 353 (396)
++-.++..+|
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 9988888875
No 143
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.14 E-value=9.3e-05 Score=66.14 Aligned_cols=122 Identities=17% Similarity=0.224 Sum_probs=92.6
Q ss_pred cCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 041816 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK--NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 327 (396)
+.+......++..+....+.+++..++...... ....-..|..++|+.|.+.|..++++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 456667777777777778888888888877654 222234455688888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 041816 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371 (396)
Q Consensus 328 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 371 (396)
.|++.+.+.|++..|.++..+|...+...+..++..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888776666667666666665554
No 144
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.12 E-value=0.00066 Score=63.19 Aligned_cols=192 Identities=14% Similarity=0.146 Sum_probs=118.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041816 115 GCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194 (396)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (396)
.+....+.|.+|+.+++.+..... -..-|..+...|+..|+++.|.++|.+. ..++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 334455677777777777766532 2334666777788888888888777542 23455677788888888
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHH
Q 041816 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274 (396)
Q Consensus 195 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 274 (396)
.|.++-.+... .......|-+-..-+-+.|++.+|.++|-.+. .|+ ..|.+|-+.|..+..++
T Consensus 809 da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----------~p~-----~aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 809 DAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----------EPD-----KAIQMYDKHGLDDDMIR 871 (1636)
T ss_pred HHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----------Cch-----HHHHHHHhhCcchHHHH
Confidence 88877766543 23445556555556666777777766664432 232 24566777777777777
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346 (396)
Q Consensus 275 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 346 (396)
+.++-.... -..|.-.+..-+-..|+...|..-|-+.. -|.+.+++|-..+.+++|.++-
T Consensus 872 lv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 872 LVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 666543221 22344555666667777777776665443 2445556666666666665553
No 145
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.09 E-value=0.00038 Score=64.70 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=72.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHH
Q 041816 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263 (396)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (396)
+.+......|.+|+.+++.+.... .-..-|..+.+-|...|+++.|.++|-+.. .++-.|.+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------------~~~dai~my 801 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------------LFKDAIDMY 801 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------------hhHHHHHHH
Confidence 444556677888888888777653 233456777788888888888888876532 345567788
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
.+.|+|++|.++-.+.. |.......|-.-..-.-+.|++.+|.+++-
T Consensus 802 ~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred hccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 88888888888766553 333344555555555556666666665543
No 146
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.06 E-value=0.00038 Score=55.15 Aligned_cols=88 Identities=8% Similarity=-0.027 Sum_probs=66.3
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD--LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (396)
.....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+.++.... +...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 4555677788888888999999999998876542222 357788888889999999999999988876433 5666777
Q ss_pred HHHHHHhcCCH
Q 041816 183 LIKGLCAESRI 193 (396)
Q Consensus 183 l~~~~~~~g~~ 193 (396)
+...+...|+.
T Consensus 112 lg~~~~~~g~~ 122 (172)
T PRK02603 112 IAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHcCCh
Confidence 77777776663
No 147
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.05 E-value=6.8e-06 Score=44.13 Aligned_cols=30 Identities=33% Similarity=0.730 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041816 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGC 389 (396)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 389 (396)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566666666666666666666666666553
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.05 E-value=0.00012 Score=65.54 Aligned_cols=124 Identities=11% Similarity=0.075 Sum_probs=91.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccc
Q 041816 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF--GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249 (396)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 249 (396)
+.+.+......++..+....+++++..++.+.+.. ....-..|..++++.|.+.|..+.++.+++.=...| +
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yG------i 134 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYG------I 134 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcc------c
Confidence 34456667777777777777788888888887765 221223455688888888888888888888877777 7
Q ss_pred cCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 041816 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 301 (396)
-||..++|.||..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 135 F~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 135 FPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred CCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7888888888888888888888888888877666655667776666666554
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=0.00028 Score=51.93 Aligned_cols=96 Identities=10% Similarity=-0.026 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CCHHHHHHHHHH
Q 041816 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLF--PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT--PDAVAFTSLIKG 186 (396)
Q Consensus 111 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 186 (396)
..+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|...++.+...... .....+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444455555555555555432210 00123333444444555555555555544443211 112334444444
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 041816 187 LCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~ 206 (396)
+.+.|+.++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 44444555555554444443
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.03 E-value=0.00013 Score=50.86 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=8.2
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 041816 218 LINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~ 238 (396)
+...+...+++++|.+.++..
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444433333
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.00 E-value=0.00012 Score=51.40 Aligned_cols=77 Identities=17% Similarity=0.357 Sum_probs=52.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCC--------hhhHHHHHHHHHhcCCCCCHHHHHH
Q 041816 112 LLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCFCKMGR--------VSHGFVVLGRILRSCFTPDAVAFTS 182 (396)
Q Consensus 112 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (396)
..|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..- ..+.+.+|++|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555566888888888888888888 7888888888887765432 2344556666666666666666666
Q ss_pred HHHHHH
Q 041816 183 LIKGLC 188 (396)
Q Consensus 183 l~~~~~ 188 (396)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 665554
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.00 E-value=1e-05 Score=55.54 Aligned_cols=81 Identities=16% Similarity=0.331 Sum_probs=44.7
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 164 (396)
|+++.|+.+|+++....+..++...+..+..++.+.|++++|+.++++ .+.+. .+......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 556677777777766555312344455566666677777777777666 22111 1223333445666666777766666
Q ss_pred HHH
Q 041816 165 LGR 167 (396)
Q Consensus 165 ~~~ 167 (396)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.99 E-value=0.0002 Score=61.45 Aligned_cols=131 Identities=11% Similarity=0.145 Sum_probs=101.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 041816 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG-FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332 (396)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 332 (396)
.+|..++....+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4788899999999999999999999986532 244555555444 33356777799999999875 45677889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 333 LCKNGKMDEASRLLELMILRGVNPNT---STFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 333 ~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
+.+.|+.+.|+.+|++.... +.++. ..|...++.=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999976 33333 58999999889999999999999998863
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.97 E-value=0.00045 Score=50.78 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=42.5
Q ss_pred ccccCChhHHHHHHHHHHhcCCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCC
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSP-PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF--PDLYTYNILINCFCKMGR 157 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~ 157 (396)
+...|++++|+..|+.+....+.. .....+..+..++.+.|++++|.+.|+.+...... .....+..+..++.+.|+
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 91 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD 91 (119)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC
Confidence 344455555555555555443321 11233444555555555555555555555442211 012334444455555555
Q ss_pred hhhHHHHHHHHHhc
Q 041816 158 VSHGFVVLGRILRS 171 (396)
Q Consensus 158 ~~~a~~~~~~~~~~ 171 (396)
.++|...++++.+.
T Consensus 92 ~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 92 KEKAKATLQQVIKR 105 (119)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555544
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.97 E-value=0.00016 Score=50.32 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 041816 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295 (396)
Q Consensus 216 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 295 (396)
..+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.|+........ +..++..+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 75 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHH
Confidence 334444555555555555555554432 223344444555555555555555555554443222 223444444
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 041816 296 HGFCYANDWNEANCLLIEMM 315 (396)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~ 315 (396)
..+...|++++|...+....
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 45555555555555554443
No 156
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.97 E-value=0.00033 Score=55.31 Aligned_cols=115 Identities=10% Similarity=-0.054 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCChhhHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP--DLYTYNILINCFCKMGRVSHGFVV 164 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~ 164 (396)
+..+...+..+.+..........|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444555554333332345667777888888899999999988887643222 234677788888888888888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHH-------hcCCHHHHHHHHHH
Q 041816 165 LGRILRSCFTPDAVAFTSLIKGLC-------AESRIMEAAALFTK 202 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~a~~~~~~ 202 (396)
++...+... .....+..+...+. ..|+++.|...+++
T Consensus 95 ~~~Al~~~~-~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERNP-FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhCc-CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 888877532 23455555665655 56666654444443
No 157
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.95 E-value=0.00018 Score=50.59 Aligned_cols=68 Identities=19% Similarity=0.419 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041816 301 ANDWNEANCLLIEMMDQGV-QPDVVTFNVIMDELCKNG--------KMDEASRLLELMILRGVNPNTSTFSTLMDGF 368 (396)
Q Consensus 301 ~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 368 (396)
.+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+|+.++..+
T Consensus 38 ~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 38 NEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred hcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3444444444444444444 444444444444433321 2233445555555555555555555555544
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.95 E-value=0.00037 Score=59.87 Aligned_cols=129 Identities=9% Similarity=0.050 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 041816 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG-LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222 (396)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 222 (396)
+|..+++...+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|.++|+...+. .+.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555556665555332 1122333332222 12234444455555555543 233445555555555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcccccCC---HhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPN---TVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
.+.++.+.|..+|+.....- +++ ...|...+..-.+.|+.+.+.++.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l-------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSL-------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTS-------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555431 111 13555555555555555555555555544
No 159
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.93 E-value=0.0077 Score=54.40 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHH
Q 041816 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP-NVITYSTLINGLCRTGHTIVALNLFE 236 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~ 236 (396)
.+.....+++++.....--..+|-.+|+...+..-+..|..+|.+..+.+..+ ++.+.++++.-||. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 33444455555443211123345556666666666777777777776665555 55566666665543 55666777776
Q ss_pred HHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD--VVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
--.... ..+..--...+.-+...++-..+..+|+.....++.|+ ...|..++..-..-|++..+.++-+++
T Consensus 426 LGLkkf-------~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKKF-------GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhc-------CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 655543 23333444555666666666777777777666644333 356777777666777777776666665
Q ss_pred H
Q 041816 315 M 315 (396)
Q Consensus 315 ~ 315 (396)
.
T Consensus 499 ~ 499 (656)
T KOG1914|consen 499 F 499 (656)
T ss_pred H
Confidence 4
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.93 E-value=0.0047 Score=51.77 Aligned_cols=184 Identities=12% Similarity=0.096 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH-HHH---HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccC
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV-ITY---STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (396)
+...+-.....+...|++++|.+.|+++... .|+. ... -.++.++.+.+++++|...+++..+..+ -.|
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P-----~~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-----THP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-----CCC
Confidence 3333334455556678888888888888775 3443 222 3456777888888888888888887652 112
Q ss_pred CHhhHHHHHHHHhc--cC---------------C---HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 252 NTVTYTTIIDGLCK--EG---------------F---VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311 (396)
Q Consensus 252 ~~~~~~~li~~~~~--~g---------------~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 311 (396)
+ .-+...+.+.+. .+ | ..+|+..|+.+++. |-...-..+|...+
T Consensus 104 ~-~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl 167 (243)
T PRK10866 104 N-IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRL 167 (243)
T ss_pred c-hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHH
Confidence 2 233333333221 11 1 12333444444333 22223334444433
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR--GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 312 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
..+... .-..- -.+.+.|.+.|.+.-|..-++.+++. +.+........++.+|...|..++|.++...+..
T Consensus 168 ~~l~~~---la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 168 VFLKDR---LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHH---HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 333321 00111 24566788999999999999999876 3344567777888999999999999988876653
No 161
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.93 E-value=1.6e-05 Score=42.69 Aligned_cols=29 Identities=38% Similarity=0.806 Sum_probs=14.9
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCC
Q 041816 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKN 283 (396)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 283 (396)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555554443
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00043 Score=57.57 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=82.3
Q ss_pred HHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 041816 70 LKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149 (396)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 149 (396)
+.+..+.-|....+.+++++|++.|..+++..| .|.+.|..-..+|.+.|.++.|++-.+.....+ +--..+|..|.
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P--~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG 156 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDP--TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHH
Confidence 344455556777788888888888888888665 478888888888888888888888888877743 12345788888
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
.+|...|++++|++.|.+.++. .|+..+|-.=+
T Consensus 157 ~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhcc--CCCcHHHHHHH
Confidence 8888888888888888887765 55655554433
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.89 E-value=0.00091 Score=52.99 Aligned_cols=62 Identities=11% Similarity=0.022 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKP--NVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
+..+...+...|++++|...|++..+....+ ....+..+...+.+.|++++|...+++....
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3334444444444444444444444322111 1234444455555555555555555554443
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.87 E-value=5.4e-05 Score=51.87 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041816 191 SRIMEAAALFTKLKAFGCK-PNVITYSTLINGLCRTGHTIVALNLFEE 237 (396)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 237 (396)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444555555554443211 1223333344555555555555555544
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.86 E-value=0.00053 Score=51.96 Aligned_cols=98 Identities=13% Similarity=0.047 Sum_probs=63.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (396)
....-.+...+...|++++|..+|+.+..... -+..-|..|.-++-..|++++|+..|.......+. |...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 33344455556667777777777777766442 24455566666677777777777777777766643 66666677777
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 041816 187 LCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~ 206 (396)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777766554
No 166
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.83 E-value=0.00058 Score=54.32 Aligned_cols=70 Identities=26% Similarity=0.293 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc----------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041816 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN----------------GKMDEASRLLELMILRGVNPNTSTFSTLMD 366 (396)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 366 (396)
..+=....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|++++++|...|+-||..++..+++
T Consensus 67 HVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~ 146 (228)
T PF06239_consen 67 HVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLN 146 (228)
T ss_pred hHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 3333444444444445555555555555443321 123446677777777777777777777777
Q ss_pred HHHhcC
Q 041816 367 GFCLTG 372 (396)
Q Consensus 367 ~~~~~g 372 (396)
.+.+.+
T Consensus 147 iFG~~s 152 (228)
T PF06239_consen 147 IFGRKS 152 (228)
T ss_pred Hhcccc
Confidence 664444
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.82 E-value=0.011 Score=49.60 Aligned_cols=175 Identities=13% Similarity=0.128 Sum_probs=94.5
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh--
Q 041816 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAF---TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR-- 224 (396)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~-- 224 (396)
..+.+.|++++|.+.|+.+...-+.. .... -.++.++.+.+++++|...+++..+........-+...+.+.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 33445566666666666665543222 1111 23445556666666666666666654221112222222222221
Q ss_pred c---------------CC---hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC
Q 041816 225 T---------------GH---TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286 (396)
Q Consensus 225 ~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 286 (396)
. .+ ..+|+..|+.+.+.. |+. .-..+|...+..+...
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--------P~S-------------~ya~~A~~rl~~l~~~---- 173 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--------PNS-------------QYTTDATKRLVFLKDR---- 173 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--------cCC-------------hhHHHHHHHHHHHHHH----
Confidence 1 11 234556666666543 222 2344554444444322
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQ--GVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
=...--.+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+...+.
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1111225566688888888888888888864 333345566778888989999998888776654
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.82 E-value=0.0011 Score=52.20 Aligned_cols=95 Identities=14% Similarity=0.028 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHh
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP--NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (396)
...+..+...+...|++++|+..|++.......+ ...+|..+...+...|++++|+..++...... +....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-------~~~~~ 107 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-------PFLPQ 107 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCcHH
Confidence 4455556666666677777777777766542121 23466677777777777777777777776643 33344
Q ss_pred hHHHHHHHHh-------ccCCHHHHHHHHHH
Q 041816 255 TYTTIIDGLC-------KEGFVDKAKELFLQ 278 (396)
Q Consensus 255 ~~~~li~~~~-------~~g~~~~a~~~~~~ 278 (396)
++..+...+. ..|++++|...+++
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 4555555555 55666655444443
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.82 E-value=0.00091 Score=59.62 Aligned_cols=93 Identities=10% Similarity=-0.086 Sum_probs=76.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 041816 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 227 (396)
....+...|++++|++.|++.++.... +...|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 345566778999999999999887644 67788888888999999999999999988875 3467788888889999999
Q ss_pred hHHHHHHHHHHHhcC
Q 041816 228 TIVALNLFEEMANGN 242 (396)
Q Consensus 228 ~~~a~~~~~~~~~~~ 242 (396)
+++|+..|++.....
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988864
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.81 E-value=0.00092 Score=50.68 Aligned_cols=89 Identities=9% Similarity=-0.080 Sum_probs=43.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 298 (396)
...+...|++++|..+|+.+...+ +-+..-|-.|..++-..|++++|+..|......++. |+..+-.+..++
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D-------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD-------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 333444555555555555554443 333444444555555555555555555555444432 444555555555
Q ss_pred HhcCCHHHHHHHHHHHH
Q 041816 299 CYANDWNEANCLLIEMM 315 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~ 315 (396)
...|+.+.|.+.|+..+
T Consensus 114 L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 114 LACDNVCYAIKALKAVV 130 (157)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555554444
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.0038 Score=52.11 Aligned_cols=85 Identities=11% Similarity=0.005 Sum_probs=40.7
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHH
Q 041816 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 233 (396)
+.+++.+|+..|.+.++..+. |...|..-..+|.+.|.++.|++-.+..+... +....+|..|..+|...|++++|++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHH
Confidence 444555555555555544322 44444444555555555555555444444432 1223445555555555555555555
Q ss_pred HHHHHHh
Q 041816 234 LFEEMAN 240 (396)
Q Consensus 234 ~~~~~~~ 240 (396)
.|++..+
T Consensus 171 aykKaLe 177 (304)
T KOG0553|consen 171 AYKKALE 177 (304)
T ss_pred HHHhhhc
Confidence 5555444
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.80 E-value=0.00075 Score=60.13 Aligned_cols=91 Identities=11% Similarity=0.020 Sum_probs=65.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 298 (396)
...+...|++++|+..|+++.... +.+...|..+..+|.+.|++++|+..++........ +...|..+..+|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~ 80 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-------PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHH
Confidence 345566777777887777777764 456667777777777778888888887777765433 566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 041816 299 CYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~ 317 (396)
...|++++|...|++.++.
T Consensus 81 ~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHhCCHHHHHHHHHHHHHh
Confidence 7778888888887777764
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.78 E-value=0.00075 Score=58.17 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=84.2
Q ss_pred hHHHHHHHHhcc-CCHHHHHHHHHHHhhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCH
Q 041816 255 TYTTIIDGLCKE-GFVDKAKELFLQMKDK----NI-NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ-----PDV 323 (396)
Q Consensus 255 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~ 323 (396)
.+..+...|... |++++|++.|++..+. +. .--..++..+...+.+.|++++|..+|+++...... .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455567777 8999999999887542 21 011345677888899999999999999998865322 222
Q ss_pred h-hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 041816 324 V-TFNVIMDELCKNGKMDEASRLLELMILR--GVNPN--TSTFSTLMDGFCL--TGRVNHAKELFVSME 385 (396)
Q Consensus 324 ~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 385 (396)
. .|-..+-++...||...|.+.+++.... ++..+ ......|+.+|-. ...+++++.-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2 2333444677789999999999998864 23323 4566777887743 345666766666554
No 174
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0097 Score=51.97 Aligned_cols=264 Identities=14% Similarity=0.037 Sum_probs=170.3
Q ss_pred hccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHH
Q 041816 74 CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCF 152 (396)
Q Consensus 74 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~ 152 (396)
....+..+.+..++..|+..+...++..+. ++..|..-+..+...+++++|+--.+.-.+.. |. .......-+++
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd--~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPD--NASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCH 127 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCcc--chhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhh
Confidence 344567778888899999999999998765 67788888888888899998887766554421 11 11233333334
Q ss_pred HhcCChhhHHHHHH---------------HHHhcCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHH
Q 041816 153 CKMGRVSHGFVVLG---------------RILRSCF-TPDAVAFTSL-IKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215 (396)
Q Consensus 153 ~~~g~~~~a~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 215 (396)
...++..+|.+.++ .+..... +|....+..+ ..++.-.|+.++|.+.--...+.. ..+....
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al 206 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEAL 206 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHH
Confidence 34444444443332 2211111 2333444444 345666799999988877777653 2233333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh-------------HHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT-------------YTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 216 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
-.-..++...++.+.|...|++....+ |+... +..-.+-..+.|++..|.+.|.+.+..
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ld--------pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLD--------PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccC--------hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 333344556889999999999988865 33321 222234456789999999999998764
Q ss_pred ---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 283 ---NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 283 ---~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
+..++...|.....+..+.|+.++|+.--++..+.+ +. ...|..-..++...+++++|.+-++...+.
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667778888888889999999998888877632 21 123333445566678888888888877764
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.74 E-value=0.0031 Score=54.43 Aligned_cols=194 Identities=13% Similarity=0.156 Sum_probs=116.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChhh
Q 041816 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST----GLFP-DLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~ 160 (396)
++++|..+|++. ...|...+++++|.+.|.+.... +-.. -...|.....+|.+ +++++
T Consensus 30 ~~e~Aa~~y~~A----------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~ 92 (282)
T PF14938_consen 30 DYEEAADLYEKA----------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDE 92 (282)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHH
T ss_pred CHHHHHHHHHHH----------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHH
Confidence 566666666654 44566778888888888776332 2111 12234455555544 48888
Q ss_pred HHHHHHHHHh----cCCCCC--HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CCCc-cHHHHHHHHHHHHhcCCh
Q 041816 161 GFVVLGRILR----SCFTPD--AVAFTSLIKGLCAE-SRIMEAAALFTKLKAF----GCKP-NVITYSTLINGLCRTGHT 228 (396)
Q Consensus 161 a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~g~~ 228 (396)
|.+.+++... .| .++ ...+..+...|-.. |++++|++.|++..+. |.+. -...+..+...+.+.|++
T Consensus 93 Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 93 AIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 8888887764 23 222 44677788888888 9999999999987653 3111 134567788899999999
Q ss_pred HHHHHHHHHHHhcCCCCcccccCCHh-hHHHHHHHHhccCCHHHHHHHHHHHhhCCC--CC--ChhhHHHHHHHH
Q 041816 229 IVALNLFEEMANGNGKFGVVCKPNTV-TYTTIIDGLCKEGFVDKAKELFLQMKDKNI--NP--DVVTYNSLIHGF 298 (396)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p--~~~~~~~li~~~ 298 (396)
++|.++|++.......... ...+.. .+...+-++...||...|.+.|++.....+ .. .......|+.+|
T Consensus 172 ~~A~~~~e~~~~~~l~~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 9999999998775411000 111222 233344466678999999999999876532 11 123445555555
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.74 E-value=0.0021 Score=59.92 Aligned_cols=143 Identities=10% Similarity=0.031 Sum_probs=100.9
Q ss_pred ccCCHhhHHHHHHHHhc--c---CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHH
Q 041816 249 CKPNTVTYTTIIDGLCK--E---GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN--------DWNEANCLLIEMM 315 (396)
Q Consensus 249 ~~~~~~~~~~li~~~~~--~---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~ 315 (396)
.+.+...|...+.+... . ++...|..+|++..+.... ....|..+..++.... ++..+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 36677888888887543 2 3477999999999987543 3445555444443221 2233444444433
Q ss_pred HC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc
Q 041816 316 DQ-GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394 (396)
Q Consensus 316 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 394 (396)
.. ....+...|..+.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++....+ |...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCc
Confidence 32 23345577888877777889999999999999986 5788999999999999999999999999988644 5544
Q ss_pred cC
Q 041816 395 SY 396 (396)
Q Consensus 395 ty 396 (396)
||
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 43
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.71 E-value=0.0031 Score=58.84 Aligned_cols=144 Identities=11% Similarity=-0.004 Sum_probs=100.6
Q ss_pred CCCccHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc--------CCHHHHH
Q 041816 207 GCKPNVITYSTLINGLCRTG-----HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE--------GFVDKAK 273 (396)
Q Consensus 207 g~~~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~ 273 (396)
+.+.+...|...+++..... +...|..+|++..+.. |.....|..+..++... ++...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-------P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~ 404 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-------PDFTYAQAEKALADIVRHSQQPLDEKQLAALS 404 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 34667888888888755432 3668999999998875 33445555554444322 1233444
Q ss_pred HHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 274 ELFLQMKDK-NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 274 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
+..+..... ....+...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444443332 123355778887777777899999999999999865 78889999999999999999999999999874
Q ss_pred CCCCCHHHH
Q 041816 353 GVNPNTSTF 361 (396)
Q Consensus 353 g~~p~~~~~ 361 (396)
.|...+|
T Consensus 483 --~P~~pt~ 489 (517)
T PRK10153 483 --RPGENTL 489 (517)
T ss_pred --CCCCchH
Confidence 5544443
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.66 E-value=9.9e-05 Score=48.18 Aligned_cols=61 Identities=26% Similarity=0.330 Sum_probs=40.5
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 147 (396)
..|++++|+++|+.+....|. +...+..+..++.+.|++++|.++++++.... |+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHH
Confidence 456777777777777776554 66666677777777777777777777776643 55444433
No 179
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0064 Score=49.81 Aligned_cols=147 Identities=13% Similarity=0.093 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (396)
++..++.|++-.. .+-+.++.++.-.|.+.-..+++++..+...+.++.....|.+.-.+.|+.+.|...|+
T Consensus 165 ~ESsv~lW~KRl~--------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 165 EESSIRLWRKRLG--------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred hhhHHHHHHHHHH--------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4666666665422 34567777888889999999999999988767788888889999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHH-----HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 167 RILRSCFTPDAVAFTSL-----IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
+..+..-..|...++.+ ...|.-.+++..|...+++....+ +.|+..-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 237 ~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 237 DVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88765433444444433 344556788999999999888765 446767777666777789999999999999986
Q ss_pred C
Q 041816 242 N 242 (396)
Q Consensus 242 ~ 242 (396)
.
T Consensus 316 ~ 316 (366)
T KOG2796|consen 316 D 316 (366)
T ss_pred C
Confidence 4
No 180
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.65 E-value=0.0021 Score=51.19 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=43.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc----------------CChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM----------------GRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~----------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
|..+-....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|++++++|...|+-||..++..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 33333334444445555555555555555444221 23456778888888888888888888888
Q ss_pred HHHHhcCC
Q 041816 185 KGLCAESR 192 (396)
Q Consensus 185 ~~~~~~g~ 192 (396)
+.+.+.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 88766554
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.62 E-value=0.0049 Score=45.03 Aligned_cols=56 Identities=25% Similarity=0.160 Sum_probs=28.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPN--VITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.++++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444555555555555555543322 223334445555555555555555555443
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.57 E-value=0.023 Score=44.19 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=67.8
Q ss_pred cCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhH
Q 041816 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG---VQPDVVTF 326 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~ 326 (396)
.|++..-..|..+....|+..+|...|++...--..-|....-.+.++....+++..|...++.+.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 355555556666666666666666666665544334455555556666666666666666666655432 1222 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041816 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378 (396)
Q Consensus 327 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 378 (396)
-.+.+.+...|+..+|+..|+..... -|+...-......+.++|+.+++.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 34455566666666666666666653 344433333334455555555444
No 183
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.012 Score=51.46 Aligned_cols=257 Identities=14% Similarity=0.017 Sum_probs=156.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041816 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196 (396)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 196 (396)
+.+..++.+|+..+....+.... +..-|..-...+.-.|+++++.--.+.-++.... ......-.-+++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHHH
Confidence 45667888899999888876522 3445555566666677777776555544433211 111222222333333333333
Q ss_pred HHHHH---------------HHHhcC-CCccHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHH
Q 041816 197 AALFT---------------KLKAFG-CKPNVITYSTL-INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259 (396)
Q Consensus 197 ~~~~~---------------~~~~~g-~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (396)
...++ ...... -+|...+|..+ ..++.-.|+.++|..+--...+.+ ..+....-.-
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-------~~n~~al~vr 209 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-------ATNAEALYVR 209 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-------cchhHHHHhc
Confidence 33332 111111 11333334333 345677899999988877777654 2222222222
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCChhhH-------------HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH
Q 041816 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTY-------------NSLIHGFCYANDWNEANCLLIEMMDQ---GVQPDV 323 (396)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-------------~~li~~~~~~~~~~~a~~~~~~~~~~---~~~p~~ 323 (396)
..++--.++.+.|...|++.+..+ |+...- ..-..-..+.|.+..|.+.+.+.+.. ++.|+.
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred ccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 234445788899999998887654 332221 11223346789999999999998853 456777
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST---LMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
..|.....+..+.|+.++|+.--++..+. |...... -..++...++|++|.+.|++..+..
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 78888888899999999999998888763 4333333 3345566799999999999877643
No 184
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.035 Score=45.64 Aligned_cols=130 Identities=13% Similarity=0.059 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH-----HH
Q 041816 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL-----IN 220 (396)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l-----l~ 220 (396)
+.++.++...|.+.-....+.++++...+.++.....|++.-...|+.+.|..+|++..+..-..|..+.+.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4555556666677777777777777665666777777777777777777777777766544223333333322 23
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
.|.-.+++..|...+.++...+ +.|...-|.-.-+..-.|+..+|++.++.|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC-------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444556666666676666654 344444454444444456677777777777665
No 185
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0084 Score=50.35 Aligned_cols=117 Identities=13% Similarity=0.029 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc---CChhhHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM---GRVSHGFV 163 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~ 163 (396)
++..+.-++.-+..+| .|...|-.|..+|...|++..|..-|.+..+.. .++...+..+..++... ....++..
T Consensus 138 ~~~l~a~Le~~L~~nP--~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 138 MEALIARLETHLQQNP--GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred HHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 4555555555555554 377777777777777777777777777776642 23555555555554332 23456677
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041816 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (396)
+++++++.... |..+...|...+...|++.+|...|+.|.+..
T Consensus 215 ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 215 LLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 77777776533 66666667777777777777777777777653
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.51 E-value=0.027 Score=43.76 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=100.4
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CC
Q 041816 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN-PD 287 (396)
Q Consensus 209 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~ 287 (396)
-|++..--.|..++...|+..+|...|++....- +..|......+.++....+++..|...++.+.+.+.. -+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGI------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence 4566666678888889999999999998887654 5677888888888888889999999999888765321 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 288 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
+.+.-.+.+.+...|.+..|..-|+..... -|+...-......+.+.|+.+++..-+..+.+
T Consensus 160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 160 PDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred CCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 334556778888889999999999988875 46655555556677888887777655554443
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.47 E-value=0.028 Score=45.82 Aligned_cols=22 Identities=5% Similarity=0.045 Sum_probs=10.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 041816 295 IHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~ 316 (396)
...|.+.|.+..|..-++.+++
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 3344445555555555544444
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.013 Score=49.27 Aligned_cols=99 Identities=16% Similarity=0.095 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCcccccCC
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG---HTIVALNLFEEMANGNGKFGVVCKPN 252 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (396)
|...|-.|...|...|+++.|..-|.+..+.. +.+...+..+..++.... ...++..+|+++...+ +.|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-------~~~ 226 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-------PAN 226 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-------Ccc
Confidence 55666666666666666666666666655542 234444444444443322 2345556666666554 445
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
+.+...|...+...|++.+|...|+.|.+.
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555555666666666666666666554
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.43 E-value=0.00069 Score=44.10 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=23.8
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041816 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (396)
.|++++|+++|+.+.+..+. +..++..+..+|.+.|++++|..+++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555444322 4444444555555555555555555544443
No 190
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.43 E-value=0.071 Score=46.56 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=83.6
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 041816 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333 (396)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 333 (396)
.+.+..|.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-..+... +-.+..|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345555677778899888888866653 36999999999999999999988876432 22458899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380 (396)
Q Consensus 334 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 380 (396)
.+.|...+|..+..++ + +..-+..|.+.|++.+|.+.
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 9999999999888772 1 24567788889998888765
No 191
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.012 Score=54.78 Aligned_cols=250 Identities=13% Similarity=0.051 Sum_probs=135.0
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHH----H--HHHHHhcCChh
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNI----L--INCFCKMGRVS 159 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~----l--i~~~~~~g~~~ 159 (396)
.++|.+..+. .|.+..|..+.......-.++.|...|-+.... |++.-...-.. + ...-.--|+++
T Consensus 679 ledA~qfiEd-------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 679 LEDAIQFIED-------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred hHHHHHHHhc-------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 5666655543 278889999988888777888888877665432 22110000000 0 11112347888
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC--KPNVITYSTLINGLCRTGHTIVALNLFEE 237 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 237 (396)
+|+++|-++-++. ..+..+.+.|++-.+.++++.--. +. .--..+|+.+...++....+++|.+.|..
T Consensus 752 eaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred Hhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888887776542 346667777887777666643111 10 01134677777777777777777777665
Q ss_pred HHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
.... ...+.++.+..++++-..+-+.+.+ +....-.+.+++...|.-++|.+.+-+-
T Consensus 822 ~~~~---------------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~--- 878 (1189)
T KOG2041|consen 822 CGDT---------------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR--- 878 (1189)
T ss_pred ccch---------------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---
Confidence 3221 1234445555555554444443332 4445566666666677666666555332
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHH
Q 041816 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF--------------STLMDGFCLTGRVNHAKELFVS 383 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~ 383 (396)
+ .| ...+..|...+++.+|.++-+...- |.+.+. .--|..+.+.|+.-+|-+++.+
T Consensus 879 s-~p-----kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 879 S-LP-----KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred c-Cc-----HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHH
Confidence 1 11 1334555566666666555443321 111111 1123445566666666666666
Q ss_pred HHh
Q 041816 384 MES 386 (396)
Q Consensus 384 m~~ 386 (396)
|-+
T Consensus 949 mae 951 (1189)
T KOG2041|consen 949 MAE 951 (1189)
T ss_pred HhH
Confidence 654
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.40 E-value=0.018 Score=42.07 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=73.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHH
Q 041816 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPD--VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD----VVTFNVIMD 331 (396)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~ 331 (396)
.+..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++..... |+ ......+..
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHH
Confidence 345667778999999999999988876643 3456677788889999999999998887642 33 223333445
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041816 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369 (396)
Q Consensus 332 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 369 (396)
++...|+.++|.+.+-..... +...|.--|..|.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 677889999998888766542 3335555554443
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.40 E-value=0.042 Score=44.77 Aligned_cols=170 Identities=19% Similarity=0.135 Sum_probs=90.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHH
Q 041816 183 LIKGLCAESRIMEAAALFTKLKAFGC--KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260 (396)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 260 (396)
....+...|++++|.+.|+.+..... +--..+.-.++.++.+.|+++.|...++.+....+. .| ...+...+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~-----~~-~~~~A~Y~ 84 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN-----SP-KADYALYM 84 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT------T-THHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----Cc-chhhHHHH
Confidence 34445566777777777777665421 112344455666777777777777777776665411 01 11111111
Q ss_pred HHHh-------------ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 041816 261 DGLC-------------KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327 (396)
Q Consensus 261 ~~~~-------------~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 327 (396)
.+.+ ..+...+|...|+. ++.-|=...-..+|...+..+.+. .-. ---
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~---------------li~~yP~S~y~~~A~~~l~~l~~~---la~-~e~ 145 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEE---------------LIKRYPNSEYAEEAKKRLAELRNR---LAE-HEL 145 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHH---------------HHHH-TTSTTHHHHHHHHHHHHHH---HHH-HHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHH---------------HHHHCcCchHHHHHHHHHHHHHHH---HHH-HHH
Confidence 1111 11122333444433 444444445555555555554431 011 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 041816 328 VIMDELCKNGKMDEASRLLELMILRGVNP---NTSTFSTLMDGFCLTGRVNHAK 378 (396)
Q Consensus 328 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~ 378 (396)
.+...|.+.|.+..|..-++.+++. .+- .......++.+|.+.|..+.|.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3677899999999999999999986 222 2345677888999999888554
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.40 E-value=0.0016 Score=56.54 Aligned_cols=133 Identities=9% Similarity=-0.031 Sum_probs=89.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHh----hCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCH
Q 041816 254 VTYTTIIDGLCKEGFVDKAKELFLQMK----DKNIN-PDVVTYNSLIHGFCYANDWNEANCLLIEMMD----QGV-QPDV 323 (396)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~p~~ 323 (396)
..|..|...|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666666777888998887655432 22211 1345677788888889999999988876542 221 1223
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 324 VTFNVIMDELCKNGKMDEASRLLELMILR-----GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
.+.-+|...|.-..++++|+.++.+-..- ...-....+.+|..+|...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34556777787778888888877654321 1233567888999999999999999888776554
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.39 E-value=0.0019 Score=56.19 Aligned_cols=271 Identities=13% Similarity=0.044 Sum_probs=163.6
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHh----hHHHHHHHHHhcCChhHHHHHHHHH--HhC--CCC-CCHHhHHHH
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLT----SFNLLFGCLAKTKHYDTVLSLFKRL--NST--GLF-PDLYTYNIL 148 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~~-p~~~~~~~l 148 (396)
|..+++.|+....+.+|+..++.|.. |.. .|..|.++|.-.+++++|+++...= ..+ |-+ -...+-..|
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 45567778999999999999998765 333 4777777888888999998875321 111 100 011222334
Q ss_pred HHHHHhcCChhhHHHHHHHH----HhcCCC-CCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 041816 149 INCFCKMGRVSHGFVVLGRI----LRSCFT-PDAVAFTSLIKGLCAESR--------------------IMEAAALFTKL 203 (396)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~ 203 (396)
.+.+--.|.+++|+..-.+- .+.|-. .....+-.+...|...|+ ++.|.++|.+=
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 44444456666665432221 222211 123344445666654442 33444555432
Q ss_pred H----hcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041816 204 K----AFGCK-PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278 (396)
Q Consensus 204 ~----~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 278 (396)
. +.|.. .-...|..|.+.|.-.|+++.|+...+.-......+|. -......+..+..++.-.|+++.|.+.|+.
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh-HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 2 11210 11234566666777788999998776654332221111 122345778888999999999999999887
Q ss_pred Hhh----CCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 279 MKD----KNI-NPDVVTYNSLIHGFCYANDWNEANCLLIEMMD----Q-GVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 279 m~~----~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
-.. .|- .....+..+|...|.-..++++|+.++.+-.. . ...-....+-+|..+|...|..++|+.+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 532 221 12455667788888888899999998876432 1 1122456788899999999999999988776
Q ss_pred HHh
Q 041816 349 MIL 351 (396)
Q Consensus 349 m~~ 351 (396)
..+
T Consensus 341 hl~ 343 (639)
T KOG1130|consen 341 HLR 343 (639)
T ss_pred HHH
Confidence 654
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.38 E-value=0.082 Score=46.14 Aligned_cols=290 Identities=15% Similarity=0.080 Sum_probs=185.3
Q ss_pred CCCccc--cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH----HH
Q 041816 78 GQGDIT--AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFG--CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI----LI 149 (396)
Q Consensus 78 ~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~----li 149 (396)
+.+++. +|+-..|.++-.+..+.-.. |..-.-.++. +-.-.|+++.|.+-|+.|.. |+.+-.. |.
T Consensus 89 StGliAagAGda~lARkmt~~~~~llss--DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLy 161 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSS--DQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLY 161 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhc--cchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHH
Confidence 344443 46667777776665432222 2222333333 33456999999999999986 3343333 33
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHHH--HHHHHHHHH---
Q 041816 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVIT--YSTLINGLC--- 223 (396)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~--~~~ll~~~~--- 223 (396)
-...+.|..+.|..+-+.....-.. -...+..++...+..|+++.|+++.+.-+... +.++..- -..|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 3345778999998888887765433 46788899999999999999999998766542 2333221 122222211
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcccccCCHhh-HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 041816 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVT-YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302 (396)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 302 (396)
-..+...|...-.+..+ +.||.+- -..-..++.+.|+..++-.+++.+-+....|+. +. +..+.+.|
T Consensus 241 ldadp~~Ar~~A~~a~K--------L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~g 308 (531)
T COG3898 241 LDADPASARDDALEANK--------LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSG 308 (531)
T ss_pred hcCChHHHHHHHHHHhh--------cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCC
Confidence 12355666666666555 3455443 334457889999999999999999988655553 22 22334455
Q ss_pred CHHHHHHHHHHHHHC-CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 041816 303 DWNEANCLLIEMMDQ-GVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC-LTGRVNHAKE 379 (396)
Q Consensus 303 ~~~~a~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~ 379 (396)
+ .+..-+++..+. .++|| ......+..+-...|++..|..--+...+ ..|....|..|.+.-. ..|+-.++..
T Consensus 309 d--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~ 384 (531)
T COG3898 309 D--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQ 384 (531)
T ss_pred C--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHH
Confidence 4 444444444321 23454 45667778888889999998887777766 4788888888887664 4599999999
Q ss_pred HHHHHHhCCCCC
Q 041816 380 LFVSMESMGCKH 391 (396)
Q Consensus 380 ~~~~m~~~g~~p 391 (396)
++-+..+.--.|
T Consensus 385 wlAqav~APrdP 396 (531)
T COG3898 385 WLAQAVKAPRDP 396 (531)
T ss_pred HHHHHhcCCCCC
Confidence 988877643333
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.35 E-value=0.00096 Score=43.58 Aligned_cols=63 Identities=19% Similarity=0.125 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccC-CHHHHHHHHHHHhh
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG-FVDKAKELFLQMKD 281 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 281 (396)
..+|..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555543 334445555555555555 45555555555443
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.34 E-value=0.022 Score=52.75 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=86.0
Q ss_pred HHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041816 111 NLLFGCLAKTKH--YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188 (396)
Q Consensus 111 ~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (396)
+..-.+|.+-.+ +-+.+.-+++++++|-.|+... +...++-.|++.+|-++|.+ .|.. |..+.+|.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyT 669 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYT 669 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHH
Confidence 333344444333 2233344556667776677653 44556667777777777754 2322 22233444
Q ss_pred hcCCHHHHHHHHH------------HHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHH------HHHhcCCCCccccc
Q 041816 189 AESRIMEAAALFT------------KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE------EMANGNGKFGVVCK 250 (396)
Q Consensus 189 ~~g~~~~a~~~~~------------~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~------~~~~~~~~~~~~~~ 250 (396)
....+|.|.+++. +--+- ..++.--.+....+...|+.++|..+.- -+.+.+... -.
T Consensus 670 DlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl---d~ 744 (1081)
T KOG1538|consen 670 DLRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL---DK 744 (1081)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc---ch
Confidence 4444444433332 11100 0011111233445556666666655432 111111000 01
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
.+..+...+..-+-+...+..|-++|..|-+. ..+++.....++|.+|..+-+..-+
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 23334444444445556667777777766432 3456666777777777777665544
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.34 E-value=0.0013 Score=42.32 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 178 VAFTSLIKGLCAESRIMEAAALFTKL 203 (396)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 203 (396)
..+..+..++...|++++|..+|+++
T Consensus 32 ~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 32 EAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333333333
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.32 E-value=0.0016 Score=41.91 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=34.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 330 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
...+.+.|++++|.+.|+.+++.. +-+...+..+..++...|++++|..+|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566666666666666666652 33556666666666666777777666666654
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.32 E-value=0.0018 Score=42.27 Aligned_cols=63 Identities=22% Similarity=0.170 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG-HTIVALNLFEEMAN 240 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~ 240 (396)
..+|..+...+...|++++|+..|++..+.. +.+...|..+..+|...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4555666666666666666666666666653 335556666666666666 56666666666554
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.23 E-value=0.034 Score=42.58 Aligned_cols=71 Identities=25% Similarity=0.335 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 041816 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL-----RGVNPNTSTF 361 (396)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 361 (396)
+...++..+...|++++|..+...+.... +.|...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44556666677777777777777777653 44666777777777777777777777776653 3677766553
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.12 E-value=0.014 Score=49.48 Aligned_cols=99 Identities=11% Similarity=0.028 Sum_probs=63.7
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHH
Q 041816 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD--VVTYNSLIHGFCYANDWNEANCLLIEMMDQG--VQPDVVTFNVI 329 (396)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l 329 (396)
..|...+..+.+.|++++|...|+.+.+..+.-. ...+..+...|...|++++|...|..+.+.- -......+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555555666788888888888777643211 2466777777777888888888887777531 11123344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 041816 330 MDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 330 ~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
...+...|+.++|..+|+.+++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 56666777888888887777764
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.11 E-value=0.016 Score=44.36 Aligned_cols=70 Identities=19% Similarity=0.279 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHh-----hCCCCCCh
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK-----DKNINPDV 288 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~ 288 (396)
+...++..+...|++++|..+.+.+.... |-+...|..+|.+|...|+..+|.++|+.+. +.|+.|+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 34455556666677777777777766654 4566667777777777777777777766653 23555554
Q ss_pred hh
Q 041816 289 VT 290 (396)
Q Consensus 289 ~~ 290 (396)
.+
T Consensus 137 ~~ 138 (146)
T PF03704_consen 137 ET 138 (146)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.11 E-value=0.15 Score=45.04 Aligned_cols=169 Identities=15% Similarity=0.070 Sum_probs=108.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc---cCCHHHHHHHHHHHhhCCCCCChhhH
Q 041816 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK---EGFVDKAKELFLQMKDKNINPDVVTY 291 (396)
Q Consensus 215 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~ 291 (396)
.-.++-.|....+++..+++++.+....... +......-.....++.+ .|+.++|++++..+......+++.+|
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~---~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCD---VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccc---hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3455556888899999999999988752100 11122223344556666 89999999999997666666788899
Q ss_pred HHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH----HHHHHHH---H-HHHhCCC
Q 041816 292 NSLIHGFCY---------ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM----DEASRLL---E-LMILRGV 354 (396)
Q Consensus 292 ~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~A~~~~---~-~m~~~g~ 354 (396)
..+.+.|-. ....++|...|.+.-+. .||...--.++..+...|.. .+..++- . .+.++|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 888877632 22467788888776653 35554433333333333422 2233332 1 2223332
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 355 ---NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 355 ---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
..+-..+.+++.++.-.|+.++|.+..++|.+..
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 3456667788899999999999999999998763
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.10 E-value=0.018 Score=48.75 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=68.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCccHHHHHHHH
Q 041816 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPD--AVAFTSLIKGLCAESRIMEAAALFTKLKAFG--CKPNVITYSTLI 219 (396)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~ll 219 (396)
.|...+..+.+.|++++|...|+.+++..+... ...+-.+...|...|++++|...|+.+.+.- -+.....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 455555445666888888888888887643321 3456677788888888888888888887642 111244555566
Q ss_pred HHHHhcCChHHHHHHHHHHHhcC
Q 041816 220 NGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
..+...|+.++|..+|+.+.+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 67778888888888888887764
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.94 E-value=0.022 Score=53.17 Aligned_cols=206 Identities=13% Similarity=0.046 Sum_probs=125.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041816 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTP--------DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209 (396)
Q Consensus 139 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 209 (396)
.|.+..|..+.......-.++.|+..|-+.... |++. +...-.+=+.+| -|++++|+++|-+|.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 478888888888777777777777776655431 2210 111111222222 37888888888777654
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChh
Q 041816 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289 (396)
Q Consensus 210 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 289 (396)
| ..+..+.+.|++-.+.++++.-..... -.--...|+.+...+.....|++|.+.|..-...
T Consensus 764 -D-----LAielr~klgDwfrV~qL~r~g~~d~d-----D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------- 825 (1189)
T KOG2041|consen 764 -D-----LAIELRKKLGDWFRVYQLIRNGGSDDD-----DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------- 825 (1189)
T ss_pred -h-----hhHHHHHhhhhHHHHHHHHHccCCCcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------
Confidence 2 245667778888766666654221110 0112357888888888888888888887664321
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041816 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369 (396)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 369 (396)
...+.++.+..++++-+.+...+ +-|....-.+.+++.+.|.-++|.+.+-+-. .| ...+..|.
T Consensus 826 --e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv 889 (1189)
T KOG2041|consen 826 --ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCV 889 (1189)
T ss_pred --HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHH
Confidence 23556666666666655554443 4456677788888889998888887764432 11 12345566
Q ss_pred hcCCHHHHHHHHHH
Q 041816 370 LTGRVNHAKELFVS 383 (396)
Q Consensus 370 ~~g~~~~A~~~~~~ 383 (396)
..++|.+|.++-++
T Consensus 890 ~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666665544
No 208
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.92 E-value=0.18 Score=41.67 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=38.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
+.+-|.+.|.+..|..-++++.+.... .+-....+-.|.++|...|..++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~----t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPD----TSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 456677778888787777777776421 1112234555666777777777777766555443
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.91 E-value=0.0018 Score=43.52 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCC-HhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
..+++.+...|...|++++|+..|++..+.....+. -.|+ ..++..+..+|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456788888888999999998888887654211111 1222 56778888888999999999998887653
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.87 E-value=0.033 Score=49.91 Aligned_cols=66 Identities=15% Similarity=0.042 Sum_probs=50.2
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 041816 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL----YTYNILINCFCKMGRVSHGFVVLGRILRS 171 (396)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 171 (396)
|.+...|+.+..+|.+.|++++|+..|++..+.+ |+. .+|..+..+|...|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567778888888888888888888888877653 443 34778888888888888888888887764
No 211
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.85 E-value=0.027 Score=41.58 Aligned_cols=87 Identities=13% Similarity=0.014 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---------CCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh-
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGN---------GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD- 281 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 281 (396)
..++.+++.++++.|+.+....+++..-.-+ ...+....|+..+..+++.+|+..+++..|+++.+...+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455566666666666666665555443221 011122455666666666666666666666666666543
Q ss_pred CCCCCChhhHHHHHHHH
Q 041816 282 KNINPDVVTYNSLIHGF 298 (396)
Q Consensus 282 ~~~~p~~~~~~~li~~~ 298 (396)
.+++.+..+|..|+.-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 34444555555555443
No 212
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.78 E-value=0.03 Score=41.39 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=63.9
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041816 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331 (396)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 331 (396)
|..++..+|.++++.|+.+....+++..-. +.++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345666777777777777777666655432 2211100 0000 0112345688888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 041816 332 ELCKNGKMDEASRLLELMILR-GVNPNTSTFSTLMDGFCL 370 (396)
Q Consensus 332 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~ 370 (396)
+|+..|++..|+++.+...+. +++.+...|..|+.-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 888888999998888887764 677788888888876543
No 213
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.78 E-value=0.088 Score=48.91 Aligned_cols=168 Identities=14% Similarity=0.110 Sum_probs=113.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCChhhH
Q 041816 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK----EGFVDKAKELFLQMKDKNINPDVVTY 291 (396)
Q Consensus 216 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~ 291 (396)
..++....-.||-+.+++.+.+..+.++..+.....-...|...+..++. ..+.+.|.++++.+...- |+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHH
Confidence 44566666789999999999988775543222111122344555544443 457889999999998863 455554
Q ss_pred HH-HHHHHHhcCCHHHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041816 292 NS-LIHGFCYANDWNEANCLLIEMMDQGV---QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367 (396)
Q Consensus 292 ~~-li~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 367 (396)
.. -.+.+...|+.++|++.|++...... +.....+--+..++.-.+++++|.+.|..+.+. -..+...|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-SKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-cccHHHHHHHHHHH
Confidence 43 34566788999999999998664211 122344556677788899999999999999985 24455566655544
Q ss_pred H-HhcCCH-------HHHHHHHHHHHh
Q 041816 368 F-CLTGRV-------NHAKELFVSMES 386 (396)
Q Consensus 368 ~-~~~g~~-------~~A~~~~~~m~~ 386 (396)
| ...|+. ++|.++|.+...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 567887 889999888754
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=96.77 E-value=0.014 Score=44.70 Aligned_cols=87 Identities=8% Similarity=-0.080 Sum_probs=44.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041816 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196 (396)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 196 (396)
+...|++++|..+|.-+.-.+. -+..-|..|..++-..+++++|+..|......+.. |...+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 3445566666666655544332 23333444445555555566666555555443321 333344455555555666666
Q ss_pred HHHHHHHHh
Q 041816 197 AALFTKLKA 205 (396)
Q Consensus 197 ~~~~~~~~~ 205 (396)
...|....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666655554
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.76 E-value=0.0052 Score=41.18 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 325 TFNVIMDELCKNGKMDEASRLLELMILR----GV-NPN-TSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 325 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+...|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555554432 10 111 3445555556666666666666665543
No 216
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.26 Score=41.61 Aligned_cols=148 Identities=16% Similarity=0.024 Sum_probs=101.3
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
......|++.+|..+|.......+. +...--.++.+|...|+.+.|..++..+...--.........-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 4577888999999999999887765 45566778889999999999999999886543222222223345666666677
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHhcCChHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTGHTIV 230 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~ 230 (396)
.+...+-.+.-.. +-|...-..+...+...|+.+.|...+-.+.+.. -.-|...-..++..+.-.|..+.
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 7666666665543 2266777778888888999999988776665542 12244556666766666664443
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=96.75 E-value=0.1 Score=40.01 Aligned_cols=88 Identities=11% Similarity=-0.115 Sum_probs=55.8
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 300 (396)
-+...|++++|..+|.-+...+ +-+..-|..|..++-..+++++|+..|......+.. |+..+-....++..
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~ 117 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHH
Confidence 3455677777777777766654 344555666666666677777777777665544432 55555556666667
Q ss_pred cCCHHHHHHHHHHHHH
Q 041816 301 ANDWNEANCLLIEMMD 316 (396)
Q Consensus 301 ~~~~~~a~~~~~~~~~ 316 (396)
.|+.+.|...|...++
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 7777777777766665
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.75 E-value=0.014 Score=38.51 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=28.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
.|.+.+++++|.++++++...+ +.+...|.....++.+.|++++|.+.++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555543 224444555555555555555555555555543
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.68 E-value=0.41 Score=42.44 Aligned_cols=164 Identities=15% Similarity=0.085 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCcccccCCHh
Q 041816 181 TSLIKGLCAESRIMEAAALFTKLKAFG---CKPNVITYSTLINGLCR---TGHTIVALNLFEEMANGNGKFGVVCKPNTV 254 (396)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (396)
..++-.|....+++..+++.+.+.... +.....+-....-++.+ .|+.++|++++..+.... ..++..
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~------~~~~~d 218 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD------ENPDPD 218 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc------CCCChH
Confidence 344445666666676676666666541 11122222233444455 667777777776644333 255666
Q ss_pred hHHHHHHHHhc---------cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-HH---HHHHHH---HH-HHHC
Q 041816 255 TYTTIIDGLCK---------EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND-WN---EANCLL---IE-MMDQ 317 (396)
Q Consensus 255 ~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~---~a~~~~---~~-~~~~ 317 (396)
+|..+...|-. ....++|+..|.+.-+.. |+...--.++..+.-.|. .+ +..++- .. +.+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 66666655432 223677888887765542 443332222222333332 11 222222 22 2233
Q ss_pred CCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 318 GVQ---PDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 318 ~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
|.. .|--.+..++.++.-.|+.++|.+..+.|.+.
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 322 23334577888999999999999999999976
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.65 E-value=0.012 Score=38.78 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=35.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
..|.+.+++++|.++++.+...+ +.+...+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566666777777776666653 234455556666666667777777766666654
No 221
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.65 E-value=0.41 Score=41.91 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 293 (396)
+.+..+.-+...|+...|.++-++.. -|+..-|...+.+++..++|++-.++-.. + -++.-|..
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----------v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyep 242 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----------VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEP 242 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHH
Confidence 34555677788899988888877763 47889999999999999999988776432 1 25688999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349 (396)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 349 (396)
++.+|.+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-.+.
T Consensus 243 Fv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 243 FVEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999999999888762 2256678899999999998765544
No 222
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.57 E-value=0.048 Score=49.92 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=102.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 164 (396)
++++++.++.+.-.-. +. -+....+.++..+.+.|..+.|+++...- . .-.....+.|+++.|.++
T Consensus 275 ~d~~~v~~~i~~~~ll-~~-i~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLL-PN-IPKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNLDIALEI 340 (443)
T ss_dssp T-HHH-----HHHHTG-GG---HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-HHHHHHH
T ss_pred CChhhhhhhhhhhhhc-cc-CChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCHHHHHHH
Confidence 4566655555411111 11 12455888899999999999999875432 1 234455688999998876
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 041816 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 244 (396)
.++. .+...|..|.....+.|+++.|++.|.+..+ |..|+-.|.-.|+.+.-.++.+.....+
T Consensus 341 a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-- 403 (443)
T PF04053_consen 341 AKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-- 403 (443)
T ss_dssp CCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 6542 3778999999999999999999999988653 5677778889999988888888877765
Q ss_pred CcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041816 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279 (396)
Q Consensus 245 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 279 (396)
-++....++.-.|+.++..+++.+-
T Consensus 404 ----------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 ----------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -----------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ----------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2555566666678888888877653
No 223
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.1 Score=44.64 Aligned_cols=155 Identities=13% Similarity=-0.020 Sum_probs=113.7
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHhcCC
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST---GLFPDLYTYNILINCFCKMGR 157 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~ 157 (396)
+.-.|++.+|-..++++++..| .|..+++..=.++.-.|+.+.-...++++... +++...+.-....-++.+.|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3456788999999999998655 58888998889999999999999999988653 222223333445556678999
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCccHHHHHHHHHHHHhcCChHHHHHH
Q 041816 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF---GCKPNVITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
+++|++.-++..+.+ +-|...-.++...+-..|++.++.++..+-... +.-.-..-|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999998876 347888888888999999999999988765432 1001112233334456677999999999
Q ss_pred HHHH
Q 041816 235 FEEM 238 (396)
Q Consensus 235 ~~~~ 238 (396)
|+.-
T Consensus 270 yD~e 273 (491)
T KOG2610|consen 270 YDRE 273 (491)
T ss_pred HHHH
Confidence 9763
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.48 E-value=0.059 Score=39.24 Aligned_cols=92 Identities=10% Similarity=-0.034 Sum_probs=69.4
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---hHHHHHHHHHhc
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY---TYNILINCFCKM 155 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~li~~~~~~ 155 (396)
..+..+|+++.|++.|.+.+..-|. ....||.-..++.-+|+.++|++-+++..+..-..... .|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4456778999999999999886554 77889999999999999999999999887642111222 233334456778
Q ss_pred CChhhHHHHHHHHHhcC
Q 041816 156 GRVSHGFVVLGRILRSC 172 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~ 172 (396)
|+.+.|..-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888887776
No 225
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.47 E-value=0.029 Score=46.61 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (396)
+-++.++++|...|+.||..+-..|+.++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3455666666666666666666666666655543
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.36 E-value=0.72 Score=41.38 Aligned_cols=129 Identities=14% Similarity=0.261 Sum_probs=95.3
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH-HHHHH
Q 041816 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKN-INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF-NVIMD 331 (396)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~ 331 (396)
.+|...+..-.+..-++.|..+|-+..+.+ +.+++..+++++..++ .|+..-|.++|+--+.. -||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456677777778888899999999998887 5678888899988765 57888888888875553 3454444 45566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 332 ELCKNGKMDEASRLLELMILRGVNPN--TSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 332 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
.+...++-..|..+|+..+.+ +..+ ...|..+|+--..-|+...+..+=++|.+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 677888888999999866654 3333 56788888877788888777766666654
No 227
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.32 E-value=0.14 Score=47.02 Aligned_cols=157 Identities=13% Similarity=0.094 Sum_probs=97.3
Q ss_pred HHHhcCChhHHHHHHHHHH-hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041816 116 CLAKTKHYDTVLSLFKRLN-STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194 (396)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (396)
...-.++++++.++.+.-. -..+ +....+.++..+.+.|..+.|+++..+-. .-.....+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 3445678888777765211 1111 24446778888888888888887654321 2345566788888
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHH
Q 041816 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274 (396)
Q Consensus 195 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 274 (396)
.|.++.++. .+...|..|.....+.|+++.|.+.|++.. -|..|+-.|.-.|+.+.-.+
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------------d~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------------DFSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------------CccccHHHHHHhCCHHHHHH
Confidence 888766443 366788888888889999988888888743 35667777777888877777
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313 (396)
Q Consensus 275 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (396)
+.+.....| -++....++...|+.++..+++.+
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777766554 255556666667777777776654
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.31 E-value=0.18 Score=45.39 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV----ITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
+.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346788888888999999999999999888876 4663 35888888999999999999999888774
No 229
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.54 Score=38.53 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHHHHHhc---CCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCC-HhhHHHHHHH
Q 041816 190 ESRIMEAAALFTKLKAF---GCKPN---VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN-TVTYTTIIDG 262 (396)
Q Consensus 190 ~g~~~~a~~~~~~~~~~---g~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~ 262 (396)
.-++++|+++|.+.... + ..+ ...+..+-..+.+...+++|-..+.+-......+. ..++ ...|...|-.
T Consensus 123 nv~Pd~AlqlYqralavve~~-dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~--~y~~~~k~~va~ilv 199 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEED-DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD--AYNSQCKAYVAAILV 199 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh--hcccHHHHHHHHHHH
Confidence 34566666666654321 1 111 22234444556666666655444433221110000 0111 1335555666
Q ss_pred HhccCCHHHHHHHHHHHhh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 263 LCKEGFVDKAKELFLQMKD---KNINPDVVTYNSLIHGFCYANDWNEANCLL 311 (396)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 311 (396)
|.-..++..|.+.++.--. ..-.-+..+...|+.+| ..|+.+++.+++
T Consensus 200 ~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 200 YLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 6666777788877777322 11122556677777766 456666665544
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.12 Score=45.47 Aligned_cols=91 Identities=16% Similarity=0.071 Sum_probs=51.1
Q ss_pred HHHHhcCChhhHHHHHHHHHhc-----CCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHH
Q 041816 150 NCFCKMGRVSHGFVVLGRILRS-----CFT---------PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215 (396)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 215 (396)
+.+.+.|++..|..-|++.+.. +.+ .-..+++.+.-+|.+.+++..|++.-++..+.+ +.|+...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3556777777777777665432 111 112344555555566666666666666655554 3455555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 216 STLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 216 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
-.-..++...|+++.|+..|+++.+.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 55555666666666666666666554
No 231
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.18 E-value=0.42 Score=44.73 Aligned_cols=170 Identities=15% Similarity=0.078 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHH-----HHHHHHHhcCChhhHH
Q 041816 89 EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYN-----ILINCFCKMGRVSHGF 162 (396)
Q Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~-----~li~~~~~~g~~~~a~ 162 (396)
+-+.-++++.+.+.. |+.. .+...++-.|++.+|.++|.+- |...- ...|+ -...-+...|..++-.
T Consensus 618 ~li~EL~~~k~rge~-P~~i---LlA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKK 690 (1081)
T KOG1538|consen 618 ELISELEERKKRGET-PNDL---LLADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKK 690 (1081)
T ss_pred HHHHHHHHHHhcCCC-chHH---HHHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHH
Confidence 444456667676665 4432 3556677789999999998753 32211 11111 1223344445544444
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------HHhcCC---CccHHHHHHHHHHHHhcCChHHHHH
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK------LKAFGC---KPNVITYSTLINGLCRTGHTIVALN 233 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------~~~~g~---~~~~~~~~~ll~~~~~~g~~~~a~~ 233 (396)
.+.++-.+. ..+..--.+...++...|+.++|..+.-+ +.+.+- ..+..+...+..-+.+...+..|-+
T Consensus 691 mL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAae 768 (1081)
T KOG1538|consen 691 MLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAE 768 (1081)
T ss_pred HHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHH
Confidence 443332211 01111112344555666777776654321 222221 2244555566666677888889999
Q ss_pred HHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
+|.+|-.. ..++......++|++|..+-+...+.
T Consensus 769 IF~k~gD~---------------ksiVqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 769 IFLKMGDL---------------KSLVQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred HHHHhccH---------------HHHhhheeecccchHhHhhhhhCccc
Confidence 99987543 35677788899999999998877654
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=96.16 E-value=0.57 Score=42.41 Aligned_cols=149 Identities=13% Similarity=0.057 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHhcCC-CCCCHhhHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 87 PNEAFCIFDYMLNMRP-SPPPLTSFNLLFGCLAKT---------KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
.+.|+.+|.+.+.... .|.....|..+..++... ....+|.++-++..+.+ .-|......+..+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 5678899999983222 223455666666555432 24457778888888776 347888888888778888
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHhcCChHHHHHHH
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLINGLCRTGHTIVALNLF 235 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~ 235 (396)
+++.|..+|++....++. ...+|-...-...-.|+.++|.+.+++..+... ..........+..|+..+ .+.|.++|
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 899999999999987633 455555555566678999999999999776531 112333444455666544 67777776
Q ss_pred HHH
Q 041816 236 EEM 238 (396)
Q Consensus 236 ~~~ 238 (396)
-+-
T Consensus 431 ~~~ 433 (458)
T PRK11906 431 YKE 433 (458)
T ss_pred hhc
Confidence 543
No 233
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.16 E-value=0.33 Score=35.60 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041816 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354 (396)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 354 (396)
......+......|.-++-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.++.++|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555566666666666666666542 245566666666667777777777666666666654
No 234
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.11 E-value=0.61 Score=38.20 Aligned_cols=187 Identities=19% Similarity=0.081 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFVVL 165 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 165 (396)
...+...+...............+......+...+.+..+...+...... ........+......+...+++..+...+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44444444444443322112344555555666666666666666665431 12233444555555555556666666666
Q ss_pred HHHHhcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 166 GRILRSCFTPDAVAFTSLIK-GLCAESRIMEAAALFTKLKAFGC--KPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.......
T Consensus 119 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 119 EKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN 197 (291)
T ss_pred HHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC
Confidence 6665543222 111112222 45555666666666665543211 0122222233333444555555555555555432
Q ss_pred CCCcccccC-CHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 243 GKFGVVCKP-NTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 243 ~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
+. ....+..+...+...++++.|...+.....
T Consensus 198 -------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 198 -------PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred -------cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 22 233444444444444444444444444443
No 235
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.10 E-value=0.99 Score=40.53 Aligned_cols=144 Identities=19% Similarity=0.194 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHH
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (396)
+|-.++....+..-++.|..+|-++.+.| +.+++.++++++..++ .|+..-|.++|+--.... +.+..--+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-------~d~~~y~~ 470 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-------PDSTLYKE 470 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-------CCchHHHH
Confidence 44455555556666777777777777776 5566666777776554 456667777777655542 22233334
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 041816 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPD--VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333 (396)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 333 (396)
-.+..+...++-+.|..+|+....+ +..+ ...|..+|..-..-|++..+..+-+.|.+. .|...+.......|
T Consensus 471 kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 4455556667777777777754332 1112 346777777667777777766666666552 34444443444333
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.10 E-value=0.08 Score=44.12 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041816 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373 (396)
Q Consensus 342 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 373 (396)
+++++++|...|+.||..+-..|+.++.+.|-
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 56777777777777777777777777765554
No 237
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.08 E-value=0.21 Score=36.47 Aligned_cols=89 Identities=16% Similarity=0.061 Sum_probs=38.2
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH---HHHHHHHHHHHhcCChH
Q 041816 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV---ITYSTLINGLCRTGHTI 229 (396)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~ll~~~~~~g~~~ 229 (396)
+..|+++.|++.|.+.+..-+ -....||.-..++.-.|+.++|+.=+++..+..-..+. ..|.--...|...|+.+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 344444445444444444321 13444444444444445555544444444433111111 11222223344455555
Q ss_pred HHHHHHHHHHhcC
Q 041816 230 VALNLFEEMANGN 242 (396)
Q Consensus 230 ~a~~~~~~~~~~~ 242 (396)
.|..-|+...+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 5555555555444
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.15 Score=44.77 Aligned_cols=93 Identities=13% Similarity=0.033 Sum_probs=50.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCCc---------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCccc
Q 041816 183 LIKGLCAESRIMEAAALFTKLKAF-----GCKP---------NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248 (396)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~-----g~~~---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 248 (396)
-...|.+.|++..|..-|++.... +.++ -..++..+.-+|.+.+++.+|++..++....+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~------ 287 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD------ 287 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC------
Confidence 345678899999999998886543 1110 11234444445555555555555555555443
Q ss_pred ccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 249 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
++|+...---..++...|+++.|+..|+.+++.
T Consensus 288 -~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 288 -PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred -CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 344444444444555555555555555555443
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.01 E-value=0.36 Score=43.86 Aligned_cols=78 Identities=18% Similarity=0.255 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HHHHHHHHHH
Q 041816 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFT-PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN-VITYSTLING 221 (396)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~ 221 (396)
+-..+..++.+.|+.++|++.+.+|.+.... .+..+...|+.++...+.+.++..++.+..+...+.+ ...|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3345677778899999999999999876433 2455777899999999999999999999876543322 3456654433
No 240
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=0.5 Score=36.52 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHH-HHHHH--
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV-AFTSL-- 183 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l-- 183 (396)
..|..-+. +++.+..++|+.-|..+.+.|..--+. ..-.......+.|+...|...|+++-.....|-.. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 33443333 345566677777777776655331111 11122233456677777777777766543333222 11111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
.-.+...|.+++.....+-+-..+-+.-...-..|.-+-.+.|++.+|..+|+.+....
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 12345567777777776666655544444555566666677777777777777766543
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.86 Score=38.61 Aligned_cols=142 Identities=16% Similarity=0.099 Sum_probs=81.8
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHH
Q 041816 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230 (396)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 230 (396)
.....|++.+|..+|+...+.... +...--.+..+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 455667777888877777766433 4555666777778888888888887776543211112222223344444444444
Q ss_pred HHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcC
Q 041816 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK--NINPDVVTYNSLIHGFCYAN 302 (396)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~ 302 (396)
...+-...... +.|...-..+...+...|+.++|.+.+-.+.++ |.. |...-..++..+.-.|
T Consensus 222 ~~~l~~~~aad--------Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--------PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 44444444332 346666667777777777777777766665543 222 4444455555554444
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.88 E-value=0.46 Score=34.88 Aligned_cols=140 Identities=16% Similarity=0.173 Sum_probs=81.3
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 041816 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302 (396)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 302 (396)
.-.|..++..++..+..... +..-+|-+|--....-+-+-..++++.+-+. .|.. ..|
T Consensus 13 ildG~V~qGveii~k~v~Ss---------ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~ 70 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---------NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCG 70 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----------HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S
T ss_pred HHhchHHHHHHHHHHHcCcC---------CccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhc
Confidence 34577777788888776643 3444444444333334444455555554332 2222 223
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041816 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382 (396)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 382 (396)
+.......+..+ ..+.......++.+...|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.++++
T Consensus 71 NlKrVi~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 71 NLKRVIECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp -THHHHHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 333333322221 123445566778889999999999999998764 47788999999999999999999999999
Q ss_pred HHHhCCCC
Q 041816 383 SMESMGCK 390 (396)
Q Consensus 383 ~m~~~g~~ 390 (396)
+.-+.|++
T Consensus 145 ~ACekG~k 152 (161)
T PF09205_consen 145 EACEKGLK 152 (161)
T ss_dssp HHHHTT-H
T ss_pred HHHHhchH
Confidence 99999864
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.88 E-value=0.79 Score=37.53 Aligned_cols=225 Identities=20% Similarity=0.110 Sum_probs=121.3
Q ss_pred CChhHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041816 121 KHYDTVLSLFKRLNSTGLF-PDLYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAA 198 (396)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 198 (396)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555555555555543311 12455566666666777777777776666542 223345555566666666667777777
Q ss_pred HHHHHHhcCCCccHHHHHHHHH-HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041816 199 LFTKLKAFGCKPNVITYSTLIN-GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277 (396)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 277 (396)
.+.........+ ......... .+...|+.+.|...+++....... .......+......+...++.+.+...+.
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPE----LNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 777666543222 122222223 566777777777777776442200 00122333333444555666777777766
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 278 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
.............+..+...+...++++.+...+....... |+ ...+..+...+...+..+++...+......
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66654222124555666666666666666666666666532 22 233333333344555566666666666553
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.77 E-value=0.59 Score=35.34 Aligned_cols=41 Identities=10% Similarity=0.130 Sum_probs=16.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 154 (396)
++..+.+.+.......+++.+...+. .+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 33344434444444444444443331 233334444444443
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.73 E-value=1.2 Score=38.40 Aligned_cols=163 Identities=12% Similarity=0.074 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChh
Q 041816 213 ITYSTLINGLCRTGHTI---VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289 (396)
Q Consensus 213 ~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 289 (396)
.+...++.+|...+..+ +|.++++.+.... +....++..-+..+.+.++.+++.+++..|...-.. ...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-------~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~ 156 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-------GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SES 156 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccc
Confidence 45667788888877655 5666666775553 333566667777777789999999999999875221 334
Q ss_pred hHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHh-hHH-HHH---HHHHhcCC------HHHHHHHHHHHHhC-CC
Q 041816 290 TYNSLIHGF---CYANDWNEANCLLIEMMDQGVQPDVV-TFN-VIM---DELCKNGK------MDEASRLLELMILR-GV 354 (396)
Q Consensus 290 ~~~~li~~~---~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~-~l~---~~~~~~g~------~~~A~~~~~~m~~~-g~ 354 (396)
.+..++..+ .. .....|...+..+....+.|... ... .++ ......++ ++....+++...+. +.
T Consensus 157 ~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~ 235 (278)
T PF08631_consen 157 NFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGK 235 (278)
T ss_pred hHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcC
Confidence 455544444 33 33456667776666544455443 111 111 11222222 44445555533332 23
Q ss_pred CCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHH
Q 041816 355 NPNTSTFSTL-------MDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 355 ~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m 384 (396)
+.+..+-.++ ...+.+.+++++|.++|+--
T Consensus 236 ~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 236 QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3344443333 23456789999999999854
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.71 E-value=1 Score=41.92 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=107.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH------HHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCccccc
Q 041816 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNV------ITYSTLINGLCR----TGHTIVALNLFEEMANGNGKFGVVCK 250 (396)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~------~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (396)
..++....=.||-+.+++.+.+..+.+--..+ -.|..++..++. ..+.+.|.++++.+....
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-------- 263 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-------- 263 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--------
Confidence 44555556678999999988887664311121 234444444443 456788999999999874
Q ss_pred CCHhhHHHH-HHHHhccCCHHHHHHHHHHHhhCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 041816 251 PNTVTYTTI-IDGLCKEGFVDKAKELFLQMKDKN---INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326 (396)
Q Consensus 251 ~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 326 (396)
|+...|... .+.+...|++++|++.|+...... .+.....+.-+.-.+.-..+|++|...|..+.+.. ..+..+|
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y 342 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFY 342 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHH
Confidence 666666544 456778899999999999765311 11234455666677788999999999999999753 3344445
Q ss_pred HHHHH-HHHhcCCH-------HHHHHHHHHHHh
Q 041816 327 NVIMD-ELCKNGKM-------DEASRLLELMIL 351 (396)
Q Consensus 327 ~~l~~-~~~~~g~~-------~~A~~~~~~m~~ 351 (396)
.-+.. ++...|+. ++|.++|.+...
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44433 33456777 888888877653
No 247
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.69 E-value=1.3 Score=38.44 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041816 340 DEASRLLELMILRGVNPNTSTFSTLMD 366 (396)
Q Consensus 340 ~~A~~~~~~m~~~g~~p~~~~~~~li~ 366 (396)
.++.++++.+.+.|+++....|..+.-
T Consensus 199 ~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 199 ARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHcCCccccccccHHHH
Confidence 345555666666666655555554443
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.65 E-value=0.67 Score=35.04 Aligned_cols=120 Identities=12% Similarity=-0.003 Sum_probs=75.7
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
+...+.+..++.+++.+...++ .+...++.++..|++.+ ..+.++.++. ..+......+++.|.+.+.+++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHH
Confidence 3445778888899998888764 57778888999988764 3344444442 1234445567777888888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAE-SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 224 (396)
+.-++.++.. ... .+..+... ++++.|.+++.+- .+...|..++..+..
T Consensus 88 ~~~l~~k~~~-----~~~----Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 88 AVELYKKDGN-----FKD----AIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHhhcC-----HHH----HHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 8777766532 122 23333333 6777777777651 255567777666543
No 249
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=2.3 Score=40.82 Aligned_cols=123 Identities=12% Similarity=-0.056 Sum_probs=67.3
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH--YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 157 (396)
.++.-+.+..|+++..++-..-. .....|......+.+..+ -+++++.+++=..... .+...|..+.+-....|+
T Consensus 446 Rl~~r~~Y~vaIQva~~l~~p~~--~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 446 RLVDRHLYSVAIQVAKLLNLPES--QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGR 522 (829)
T ss_pred HHHhcchhHHHHHHHHHhCCccc--cccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCc
Confidence 35556678889999888743211 123455566666665532 2334444433222222 344567777777778899
Q ss_pred hhhHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 158 VSHGFVVLGRILRSCFT----PDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 205 (396)
.+-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+..
T Consensus 523 ~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 523 FELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred HHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 88888777642222111 1122234445555666776666666655543
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=0.47 Score=39.63 Aligned_cols=97 Identities=22% Similarity=0.234 Sum_probs=64.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC-CHhhHHHHH
Q 041816 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNIN--PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG-VQP-DVVTFNVIM 330 (396)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p-~~~~~~~l~ 330 (396)
.|+.-+.. .+.|++..|...|...++.... -....+..|...+...|++++|..+|..+.+.- -.| -...+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46665554 3556688888888887765322 123456677788888888888888887777541 111 134556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 041816 331 DELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
.+..+.|+.++|...|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777788888888888887775
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.5 Score=40.63 Aligned_cols=154 Identities=12% Similarity=0.028 Sum_probs=105.3
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHH----HHHHHH
Q 041816 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN----SLIHGF 298 (396)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~----~li~~~ 298 (396)
...|+..+|-..++++.+.. |.|...+..-=.+|.-.|+.+.-...++++... -.+|...|. .+.-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-------PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-------PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hccccccHHHHHHHHHHHhC-------chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhH
Confidence 45688888888899988874 778888888888899999998888888888654 123433332 233344
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHH
Q 041816 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR---GVNPNTSTFSTLMDGFCLTGRVN 375 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~ 375 (396)
...|-+++|++.-++..+.+ +-|.-.-.++...+.-.|++.++.++..+-... +--.-..-|....-.+...+.++
T Consensus 186 ~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred HHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 68899999999888887654 334445566677777788999998887665432 11111223344444556678899
Q ss_pred HHHHHHHHHH
Q 041816 376 HAKELFVSME 385 (396)
Q Consensus 376 ~A~~~~~~m~ 385 (396)
.|+++|+.=+
T Consensus 265 ~aleIyD~ei 274 (491)
T KOG2610|consen 265 KALEIYDREI 274 (491)
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.53 E-value=1.2 Score=37.05 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=33.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 294 LIHGFCYANDWNEANCLLIEMMDQGVQPD---VVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
+.+.|.+.|.+..|..-+++|++. .+-+ ...+-.+..+|...|-.++|.+.-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445566777777777777777664 1111 22344555666667766666666555544
No 253
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.52 E-value=1 Score=36.30 Aligned_cols=192 Identities=16% Similarity=0.026 Sum_probs=108.1
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
.-|-+.|-..-|.--|.+.+...| .-+.+||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|++
T Consensus 73 vlYDSlGL~~LAR~DftQaLai~P--~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~ 149 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRY 149 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhhcCC--CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCch
Confidence 334455556666666777766555 4677899999999999999999999999988653322222333333 3356889
Q ss_pred hhHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFT-PDAVAFTSLIKGLCAESRIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 236 (396)
.-|.+-+-...+.... |-...|--+.. ..-++.+|..- .++..+. |..-|...|-.|.- |++. ...+++
T Consensus 150 ~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~ 220 (297)
T COG4785 150 KLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLME 220 (297)
T ss_pred HhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHH
Confidence 9998877777765432 33333433332 23456666543 3444432 43444433333222 2111 122333
Q ss_pred HHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
.+..........-..-+.||-.|..-+...|+.++|..+|+-....
T Consensus 221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3333220000000112356677777778888888888888777654
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.49 E-value=0.68 Score=34.76 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=48.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041816 114 FGCLAKTKHYDTVLSLFKRLNSTGL--FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189 (396)
Q Consensus 114 ~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (396)
.....+.|++++|.+.|+.+..+-. +-....-..++.+|.+.+++++|...+++.++..+.....-|...+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3344566888888888888876521 112344556777788888888888888888877654444455555555443
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.31 E-value=0.36 Score=40.28 Aligned_cols=88 Identities=17% Similarity=0.084 Sum_probs=37.9
Q ss_pred hcCChhhHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C-CccHHHHHHHHHHHHhcCChH
Q 041816 154 KMGRVSHGFVVLGRILRSCFT--PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-C-KPNVITYSTLINGLCRTGHTI 229 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~-~~~~~~~~~ll~~~~~~g~~~ 229 (396)
+.|++..|...|...++..+. -....+--|..++...|++++|..+|..+.+.- - +.-+..+--|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 334455555555555543211 011222234455555555555555554444431 0 011233444444444555555
Q ss_pred HHHHHHHHHHhc
Q 041816 230 VALNLFEEMANG 241 (396)
Q Consensus 230 ~a~~~~~~~~~~ 241 (396)
+|..+|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 256
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.21 E-value=3.1 Score=39.87 Aligned_cols=275 Identities=12% Similarity=0.052 Sum_probs=157.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHhhHHHHHHH-----HHhcCChhHHHHHHHHHHh-------CCCCCCHHhHHHHHHHHH
Q 041816 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGC-----LAKTKHYDTVLSLFKRLNS-------TGLFPDLYTYNILINCFC 153 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~p~~~~~~~li~~~~ 153 (396)
....|++.++...+.+.. ..-..+..+ +....+.+.|+.+++.+.+ .| +.....-+..+|.
T Consensus 227 ~~~~a~~~~~~~a~~g~~----~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHS----EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYL 299 (552)
T ss_pred hhhHHHHHHHHHHhhcch----HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHh
Confidence 467899999988876643 222222222 3356789999999999876 44 3345566777777
Q ss_pred hcC-----ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH----
Q 041816 154 KMG-----RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA-ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC---- 223 (396)
Q Consensus 154 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~---- 223 (396)
+.. +.+.|..++....+.|.+ +....-..+..... ..+...|.++|...-+.|.. . .+-.+..+|.
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLG 375 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCC
Confidence 643 566799999998888743 44443333332222 24678999999999988832 2 2223333332
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH----H
Q 041816 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF----C 299 (396)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~ 299 (396)
-..+.+.|..++++..+.+ .|...--...+..+.. +.++.+.-.+..+.+.|.. ...+-...+..- .
T Consensus 376 v~r~~~~A~~~~k~aA~~g-------~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~ 446 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-------NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDL 446 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-------ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccc
Confidence 2347889999999998876 2222222233334444 7777777777777666544 222222222111 0
Q ss_pred h----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 041816 300 Y----ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN----GKMDEASRLLELMILRGVNPNTSTFSTLMDGFC-- 369 (396)
Q Consensus 300 ~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-- 369 (396)
. ..+.+.+...+......| +......+-+.|..- .+++.|...+......+ ......+...+-
T Consensus 447 ~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g 519 (552)
T KOG1550|consen 447 FSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHG 519 (552)
T ss_pred cccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcC
Confidence 1 124556666666666544 334444444444332 34677777777666654 222222222221
Q ss_pred --hcCCHHHHHHHHHHHHhCC
Q 041816 370 --LTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 370 --~~g~~~~A~~~~~~m~~~g 388 (396)
... +..|.+++++..+.+
T Consensus 520 ~g~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 520 EGIKV-LHLAKRYYDQASEED 539 (552)
T ss_pred cCcch-hHHHHHHHHHHHhcC
Confidence 123 677778877766543
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.18 E-value=0.88 Score=39.65 Aligned_cols=50 Identities=10% Similarity=0.116 Sum_probs=24.7
Q ss_pred CCccccCChhHHHHHHHHHHhcCCC-CCCHhhHHHHHHHHHhcCChhHHHH
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPS-PPPLTSFNLLFGCLAKTKHYDTVLS 128 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 128 (396)
..+....+.++|+..|.+.+..-.. -....++..+..+.++.|.+++++.
T Consensus 14 ~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 14 LQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 3455556666666666655442111 0122344555555555555555544
No 258
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.16 E-value=2.4 Score=38.32 Aligned_cols=113 Identities=15% Similarity=0.141 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHH----HHHH---hcCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHH--HHh
Q 041816 269 VDKAKELFLQMKDKNINPDVVTYNSLI----HGFC---YANDWNEANCLLIEMMDQGVQPDVV----TFNVIMDE--LCK 335 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p~~~~~~~li----~~~~---~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~--~~~ 335 (396)
-++|+++++.+.+-..- |..+-|.+. .+|. ....+.+-.++-+-+.+.|+.|-.. .-|.|.++ +..
T Consensus 396 dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 66677777766653211 333333322 1221 1223444444444455667766433 34444443 456
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
.|++.++.-.-.-+.+ +.|++.+|..+.-.+....++++|.+++.++
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 7888888766555555 7899999999999999999999999999875
No 259
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.11 E-value=2.2 Score=37.72 Aligned_cols=251 Identities=11% Similarity=0.087 Sum_probs=161.7
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTS--FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
+.-.-.|+.++|.+-|+.|... |.... ...|.-...+.|+.+.|.+.-+..-..- +.-.-.+...+...+..|
T Consensus 128 Qaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 128 QAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAG 202 (531)
T ss_pred HHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcC
Confidence 3344578999999999999752 22221 1222222346789999999888876542 223456788999999999
Q ss_pred ChhhHHHHHHHHHhcC-CCCCHH--HHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHhcCChH
Q 041816 157 RVSHGFVVLGRILRSC-FTPDAV--AFTSLIKGLC---AESRIMEAAALFTKLKAFGCKPNVI-TYSTLINGLCRTGHTI 229 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~ 229 (396)
+++.|+++++.-.+.. +.++.. .-..|+.+-. -..+...|...-.+..+. .||.. .-..-..++.+.|+..
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~r 280 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLR 280 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchh
Confidence 9999999999876543 233322 1122222211 123455566555555443 44432 2233457889999999
Q ss_pred HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHH----HHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 041816 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK----ELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305 (396)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~----~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 305 (396)
++-.+++.+-+.. |....+... .+.+.|+..... +-+..|+.. +......+..+-...|++.
T Consensus 281 Kg~~ilE~aWK~e--------PHP~ia~lY--~~ar~gdta~dRlkRa~~L~slk~n----naes~~~va~aAlda~e~~ 346 (531)
T COG3898 281 KGSKILETAWKAE--------PHPDIALLY--VRARSGDTALDRLKRAKKLESLKPN----NAESSLAVAEAALDAGEFS 346 (531)
T ss_pred hhhhHHHHHHhcC--------CChHHHHHH--HHhcCCCcHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHhccchH
Confidence 9999999998875 444333322 334555532211 112233322 5667777888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHhC
Q 041816 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCK-NGKMDEASRLLELMILR 352 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~ 352 (396)
.|..--+...+ ..|....|..|.+.-.. .|+-.++...+.+.++.
T Consensus 347 ~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 347 AARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 88887777665 36888888888887654 59999999999988875
No 260
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.09 E-value=1.6 Score=38.16 Aligned_cols=232 Identities=12% Similarity=0.061 Sum_probs=125.7
Q ss_pred HHhcCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc--CCC---CCHHHHHHHHHHHHh
Q 041816 117 LAKTKHYDTVLSLFKRLNSTG--LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS--CFT---PDAVAFTSLIKGLCA 189 (396)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~ 189 (396)
+....+.++|+..+.+-..+- ..--..+|..+..+.++.|.+++++..--.-++. ... .-...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888887765431 1112346677777888888877765432221110 001 113344555555555
Q ss_pred cCCHHHHHHHHHHHHhc-CCCc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 190 ESRIMEAAALFTKLKAF-GCKP---NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 190 ~g~~~~a~~~~~~~~~~-g~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
.-++.+++.+-..-... |..+ .-...-.+..++...+.++++++.|+...+.....+. ......+|..|.+.|.+
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D-~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD-AMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC-ceeeeehhhhHHHHHHH
Confidence 55555555555443332 2222 1223345566666677777888887777665422111 01123567777777777
Q ss_pred cCCHHHHHHHHHHHhh----CCCCCChh-hH-----HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HhhHHHHH
Q 041816 266 EGFVDKAKELFLQMKD----KNINPDVV-TY-----NSLIHGFCYANDWNEANCLLIEMMD----QGVQPD-VVTFNVIM 330 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~----~~~~p~~~-~~-----~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~ 330 (396)
..|+++|.-...+..+ .++. |.. -| ..|.-++...|....|.+.-++..+ .|-.+. ......+.
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 7788777766655432 2222 211 12 2233445566777777777666553 232221 23345566
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 041816 331 DELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~m~ 350 (396)
+.|...|+.+.|..-|+...
T Consensus 254 DIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHhcccHhHHHHHHHHHH
Confidence 67777777777776666554
No 261
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.94 E-value=0.59 Score=37.02 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---ccH----HH
Q 041816 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTP--DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK---PNV----IT 214 (396)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~---~~~----~~ 214 (396)
.+..+...|++.|+.+.|.+.|.++.+....+ -...+-.+|+...-.+++..+...+.+....-.. .+. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34455555666666666666666655542222 2334455555666666666666665554432111 111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 215 YSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 215 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
|..+ .+...+++..|-+.|-+....
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccCcC
Confidence 1111 233456777777777665543
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.90 E-value=0.96 Score=41.25 Aligned_cols=77 Identities=9% Similarity=0.009 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 041816 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQ-PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP-NTSTFSTLMDGF 368 (396)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~ 368 (396)
..+..++-+.|+.++|.+.+++|.+..-. -+......|+.++...+.+.++..++.+..+...+. -...|+..+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 44566667889999999999988864311 234466788888999999999998888875432222 234455544333
No 263
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.86 E-value=2.3 Score=36.63 Aligned_cols=222 Identities=14% Similarity=0.090 Sum_probs=113.5
Q ss_pred hcCChhHHHHHHHHHHhCC--CCCCHH------hHHHHHHHHHhcC-ChhhHHHHHHHHHhc--------CCCCC-----
Q 041816 119 KTKHYDTVLSLFKRLNSTG--LFPDLY------TYNILINCFCKMG-RVSHGFVVLGRILRS--------CFTPD----- 176 (396)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~--~~p~~~------~~~~li~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~----- 176 (396)
+.|+++.|..++.+..... ..|+.. .|+.-.. ..+.+ +++.|..++++..+. ...++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4566666666666654322 122211 1222222 23334 666666555554332 11222
Q ss_pred HHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCH
Q 041816 177 AVAFTSLIKGLCAESRIM---EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (396)
..++..++.+|...+..+ +|..+++.+.... +-....+..-+..+.+.++.+++.+.+.+|...- .-..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-------~~~e 155 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-------DHSE 155 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-------cccc
Confidence 345667777777776644 5566666665542 2234555566677777888889999998888763 2233
Q ss_pred hhHHHHHHHH---hccCCHHHHHHHHHHHhhCCCCCChh-hHHHH-HH---HHHhcCC------HHHHHHHHHHHHHC-C
Q 041816 254 VTYTTIIDGL---CKEGFVDKAKELFLQMKDKNINPDVV-TYNSL-IH---GFCYAND------WNEANCLLIEMMDQ-G 318 (396)
Q Consensus 254 ~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l-i~---~~~~~~~------~~~a~~~~~~~~~~-~ 318 (396)
..+..++..+ .. .....|...++.+....+.|... ....+ +. ...+.++ .+....++..+.+. +
T Consensus 156 ~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~ 234 (278)
T PF08631_consen 156 SNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLG 234 (278)
T ss_pred chHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhc
Confidence 4455555544 33 23456666666665544444443 11111 11 1112111 34444445533322 2
Q ss_pred CCCCHhhHH---HHH----HHHHhcCCHHHHHHHHHHHH
Q 041816 319 VQPDVVTFN---VIM----DELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 319 ~~p~~~~~~---~l~----~~~~~~g~~~~A~~~~~~m~ 350 (396)
.+.+..+-. +++ ..+.+.+++++|.+.|+-..
T Consensus 235 ~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 235 KQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 233333322 222 23456789999999988554
No 264
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.77 E-value=0.47 Score=35.61 Aligned_cols=76 Identities=11% Similarity=0.014 Sum_probs=55.9
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPP-PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
.+..|++++|++.|+.+...-|..+ ...+--.++.++.+.+++++|+..+++..+....-...-|...+.+++...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3456889999999999998877643 345666789999999999999999999988653322234555555555433
No 265
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.73 E-value=1.1 Score=34.35 Aligned_cols=49 Identities=24% Similarity=0.421 Sum_probs=28.4
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041816 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 136 (396)
+.+++..+++-+.-..|..+...++... .+...|+|.+|+.+|+++.+.
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence 5666666666666655554444444333 345566677777777666554
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.67 E-value=0.15 Score=29.53 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHH
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 260 (396)
+|..+...|...|++++|.++|+++.+.. +.|...+..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-------P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-------PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCCHHHHHHhh
Confidence 46667777888888888888888877764 45555555443
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.64 E-value=0.14 Score=29.69 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=7.4
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 041816 185 KGLCAESRIMEAAALFTKLK 204 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~ 204 (396)
..|.+.|++++|+++|++..
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 33333333333333333333
No 268
>PRK11906 transcriptional regulator; Provisional
Probab=94.61 E-value=3.5 Score=37.59 Aligned_cols=163 Identities=10% Similarity=0.071 Sum_probs=93.5
Q ss_pred hhH--HHHHHHHHhc-----CChhHHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHh---------cCChhhHHHHHHHHH
Q 041816 108 TSF--NLLFGCLAKT-----KHYDTVLSLFKRLNST-GLFPD-LYTYNILINCFCK---------MGRVSHGFVVLGRIL 169 (396)
Q Consensus 108 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~-~~~p~-~~~~~~li~~~~~---------~g~~~~a~~~~~~~~ 169 (396)
..| ...+.+.... ...+.|+.+|.+.... .+.|+ ...|..+..++.. ..+..+|.++-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555554442 2345677788887721 13343 3344443333221 123445666677777
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccc
Q 041816 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249 (396)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 249 (396)
+.+.. |......+..+..-.++++.|...|++....+ +-...+|........-.|+.++|.+.+++..+... .
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP-----~ 404 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP-----R 404 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc-----h
Confidence 76633 77777777777777777888888888887764 22355566666666778888888888888666431 1
Q ss_pred cCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041816 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 278 (396)
..-....-..+..|+..+ .+.|+++|-+
T Consensus 405 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 405 RRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred hhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 112223333344555443 4555555543
No 269
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=2.2 Score=35.16 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRIL 169 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~ 169 (396)
|.-...+|....++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3334445555555666555554443
No 270
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.51 E-value=0.49 Score=40.11 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh-----CCCCC
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD-----KNINP 286 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p 286 (396)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.. .|+.|
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P 225 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP 225 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc
Confidence 3456777888888888888888888888875 66788888888888888888888888888754 57777
Q ss_pred ChhhHHHHHHH
Q 041816 287 DVVTYNSLIHG 297 (396)
Q Consensus 287 ~~~~~~~li~~ 297 (396)
...+.......
T Consensus 226 ~~~~~~~y~~~ 236 (280)
T COG3629 226 APELRALYEEI 236 (280)
T ss_pred cHHHHHHHHHH
Confidence 76666555554
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.37 E-value=0.68 Score=39.31 Aligned_cols=78 Identities=18% Similarity=0.174 Sum_probs=61.9
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCccHHHHHH
Q 041816 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA-----FGCKPNVITYST 217 (396)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~~~~~~ 217 (396)
.++..++..+...|+++.+.+.++++....+ -+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3556677788888889999999998888763 4788899999999999999999998888765 477887777666
Q ss_pred HHHH
Q 041816 218 LING 221 (396)
Q Consensus 218 ll~~ 221 (396)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 272
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.27 E-value=0.07 Score=28.95 Aligned_cols=32 Identities=13% Similarity=0.354 Sum_probs=24.1
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 041816 94 FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVL 127 (396)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 127 (396)
|++.++..| .++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P--~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP--NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC--CCHHHHHHHHHHHHHCcCHHhhc
Confidence 445555544 48888888888888888888875
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.15 E-value=1.5 Score=34.80 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN--VITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
...+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.++......+++..+...+.+....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35677888889999999999999999887744433 445677788888888888888888777654
No 274
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.13 E-value=2.2 Score=33.26 Aligned_cols=134 Identities=16% Similarity=0.211 Sum_probs=65.3
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041816 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207 (396)
Q Consensus 128 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (396)
+.++.+.+.++.|+...+..+++.+.+.|++.. +..+++.++-+|.......+-.+.. ....+.++=-.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 444455556667777777777777777776543 3334444444444444333322221 222222222222221
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 208 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
=...+..++..+...|++-+|+++.+...... ......++++..+.+|...-..+|+-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----------~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----------SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----------cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00124556666667777777777766643221 22224455555555555544444444443
No 275
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=2.8 Score=40.82 Aligned_cols=210 Identities=12% Similarity=0.110 Sum_probs=131.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF----TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
...-+..+.+...++.|+.+-+. .+. +.... .....-+.+.|++++|...|-+.... +.| ..++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 44566677777777777766543 222 33333 33444556789999999888776653 222 23566
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 300 (396)
-|....+...-..+++.+.+.+ -.+...-+.|+.+|.+.++.+.-.+..+... .|.. ..-....+..+.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~g-------la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKG-------LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRK 475 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcc-------cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHH
Confidence 6777777788888888888887 4566677889999999999998877776654 3322 1124566777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380 (396)
Q Consensus 301 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 380 (396)
.+-.++|..+-..... +......+ +-..|++++|.+.++.+--.. -..+.......+. ...+++...+
T Consensus 476 snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e---~l~~l~kyGk~Ll-~h~P~~t~~i 543 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISE---LLRTLNKYGKILL-EHDPEETMKI 543 (933)
T ss_pred hChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHH---HHHHHHHHHHHHH-hhChHHHHHH
Confidence 7777887766655433 23333333 456788999999988763111 1122222222222 3456777776
Q ss_pred HHHHHhC
Q 041816 381 FVSMESM 387 (396)
Q Consensus 381 ~~~m~~~ 387 (396)
+-+....
T Consensus 544 li~~~t~ 550 (933)
T KOG2114|consen 544 LIELITE 550 (933)
T ss_pred HHHHHhh
Confidence 6665543
No 276
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.93 E-value=1.1 Score=41.82 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (396)
.-+.++..+.++|-.++|+++- +|..- -.....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 3455556666666666665442 22221 1223345677777776655432 5667788888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
..|++..|.+.|.+... |..|+-.+...|+.+....+-....+.+ .. |....+|...|+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-------~~-----N~AF~~~~l~g~ 736 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-------KN-----NLAFLAYFLSGD 736 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-------cc-----chHHHHHHHcCC
Confidence 88888888888776654 4456666777777766666666655554 12 233345556688
Q ss_pred HHHHHHHHHHH
Q 041816 269 VDKAKELFLQM 279 (396)
Q Consensus 269 ~~~a~~~~~~m 279 (396)
++++.+++..-
T Consensus 737 ~~~C~~lLi~t 747 (794)
T KOG0276|consen 737 YEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhc
Confidence 88887776553
No 277
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.91 E-value=3.9 Score=35.46 Aligned_cols=134 Identities=12% Similarity=0.141 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCR--TG----HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
+++...+++.|.+.|...+..+|-+..-.... .. ....|..+|+.|.+...-. ..++-..+..++.. ..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL---Ts~~D~~~a~lLA~--~~ 152 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL---TSPEDYPFAALLAM--TS 152 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc---cCccchhHHHHHhc--cc
Confidence 44566778888888887777665543332222 22 2346888999998876322 23455566666554 33
Q ss_pred CC----HHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041816 267 GF----VDKAKELFLQMKDKNINPDV--VTYNSLIHGFCYAND--WNEANCLLIEMMDQGVQPDVVTFNVIMD 331 (396)
Q Consensus 267 g~----~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 331 (396)
++ .+.+..+|+.+.+.|+..+. .....++..+..... ..++..+++.+.+.|+++....|..+.-
T Consensus 153 ~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 153 EDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 33 35667777777776665432 333344433322222 4478888899999998888777765543
No 278
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.65 E-value=2.3 Score=32.16 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=36.9
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041816 84 AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG 137 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 137 (396)
.++++++..+++.+.-..|..+...++-..+ +...|+|++|+++|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 5667888888888877777655555555443 567788888888888887654
No 279
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.45 E-value=2.9 Score=32.51 Aligned_cols=138 Identities=17% Similarity=0.139 Sum_probs=93.3
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHH-
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV-TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV-TFNVI- 329 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l- 329 (396)
...|..-+. ..+.+..++|+.-|..+.+.|..--+. .-........+.|+-..|...|+++-.....|-.. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 444544444 356688999999999999886552111 11223344578899999999999998764444332 11111
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041816 330 -MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391 (396)
Q Consensus 330 -~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 391 (396)
...+...|.++......+-+...+-+--...-..|.-+-.+.|++..|..+|..+....-.|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22456789999988888877765544455556777778889999999999999987644444
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.42 E-value=0.19 Score=27.57 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRL 133 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~ 133 (396)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666663
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.35 E-value=0.24 Score=27.21 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 360 TFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
+|..|...|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777778888888888777744
No 282
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.17 E-value=11 Score=38.48 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHhcC--ChhHHHHHHHHHHh
Q 041816 108 TSFNLLFGCLAKTK--HYDTVLSLFKRLNS 135 (396)
Q Consensus 108 ~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 135 (396)
.....+|..|.+.+ ..++|+....+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34455677777766 66677766666654
No 283
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.13 E-value=7.1 Score=36.03 Aligned_cols=182 Identities=14% Similarity=0.106 Sum_probs=124.6
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHH
Q 041816 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182 (396)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (396)
.+-+-...-+++..+.++..++-+..+..+|...| -+-..|..++.+|... .-+.-..+++++.+..+. |+..-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 33566677788999999999999999999999876 5778899999999988 567778899998887654 5555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCc-----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHH
Q 041816 183 LIKGLCAESRIMEAAALFTKLKAFGCKP-----NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257 (396)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~g~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (396)
|...|-+ ++...+..+|.+....-++. -...|.-+...- ..+.+..+.+..++....+ ...-.+.+.
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg-----~~~~~Vl~q 209 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLG-----EGRGSVLMQ 209 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhc-----cchHHHHHH
Confidence 5555555 88888888888776543221 122444444321 3456677777777665442 223345566
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 041816 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297 (396)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 297 (396)
-+-.-|....++++|++++..+.+.+-+ |...-..++.-
T Consensus 210 dv~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 210 DVYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred HHHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 6667788889999999999987765433 44444444443
No 284
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.98 E-value=12 Score=38.29 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=63.3
Q ss_pred cCCHhhHHHHHHHH----hccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-
Q 041816 250 KPNTVTYTTIIDGL----CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV- 324 (396)
Q Consensus 250 ~~~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~- 324 (396)
.|+...+.....+| ...+.+++|.-.|+..-+ ..--+.+|..+|+|.+|..+..++... -|..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 34544444333333 334555555555544322 123455666677777777766655421 1222
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 325 -TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 325 -~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
+-..|+.-+...+++-+|-++..+.... . ...+..|++...|++|.++-..-
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd----~----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD----P----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhcC----H----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 2256677777888888888887777643 1 22344556666777777665443
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.66 E-value=7.1 Score=34.80 Aligned_cols=66 Identities=14% Similarity=0.000 Sum_probs=43.8
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP---DVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
....+|..++..+.+.|.++.|...+..+...+... .+.....-....-..|+..+|...+++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567777788888888888888888776643221 233444445555667777888887777776
No 286
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.55 E-value=10 Score=36.38 Aligned_cols=178 Identities=14% Similarity=0.039 Sum_probs=100.2
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------cCCCccHHHHHHHHHHHHhc
Q 041816 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKG-----LCAESRIMEAAALFTKLKA-------FGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~g~~~~~~~~~~ll~~~~~~ 225 (396)
...+.++++...+.| +......+..+ +....+.+.|+.+|+.+.+ .| ......-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 356777777777765 22222222222 3355678888888887766 44 223455566666664
Q ss_pred C-----ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc-cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041816 226 G-----HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK-EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299 (396)
Q Consensus 226 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 299 (396)
. +.+.|+.++.+....+ .|+.......+..... ..+...|.++|......|.. ..+-.+...|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~ 371 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYE 371 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHH
Confidence 3 5566888888887776 4454444433333333 34677888888888877743 22222222221
Q ss_pred ----hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 300 ----YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353 (396)
Q Consensus 300 ----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 353 (396)
...+.+.|..++++..+.| .|-..--...+..+.. ++.+.+.-.+..+.+.|
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2346778888888887776 3322222222333333 66666666665555544
No 287
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.44 E-value=12 Score=36.82 Aligned_cols=176 Identities=16% Similarity=0.160 Sum_probs=118.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH----HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI----NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
...-+..+.+...++-|+.+-+. .+ .|..+...+. .-+.+.|++++|...|-+-+.. ++| ..++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 45567777888888888877554 33 2444334443 4456789999999888776643 232 23566
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
-|....++.+--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|. . ..-....+..+.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~-----~---~fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGE-----W---FFDVETALEILRK 475 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccc-----e---eeeHHHHHHHHHH
Confidence 677777888888999999999864 66666889999999999999888777655 221 1 1123455666667
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
.+-.++|..+-..... .......++ -..+++++|++.+..+
T Consensus 476 snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 7777777666544432 333344443 4578899999998765
No 288
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.23 E-value=2.4 Score=36.36 Aligned_cols=102 Identities=17% Similarity=0.281 Sum_probs=73.2
Q ss_pred ccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 041816 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK---NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325 (396)
Q Consensus 249 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 325 (396)
.+....+...++..-.....++.++..+-++... ...|+... ..+++.+ -.-+.++++.++..=+..|+-||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 3455666666777667778888888888777643 12222211 2233332 34467799999888888999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 326 FNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 326 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
++.+++.+.+.+++.+|.++.-.|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999998888777654
No 289
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.93 E-value=5.8 Score=32.20 Aligned_cols=160 Identities=14% Similarity=0.083 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhH
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
+.+||.|.--+...|+++.|.+.|+...+.... ...+...-.-++.-.|+++.|.+-+.+.-+.+. -.|-...|
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~-----~DPfR~LW 172 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP-----NDPFRSLW 172 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhcCC-----CChHHHHH
Confidence 556666666666677777777777766665322 111221122223345666666666655555441 12222333
Q ss_pred HHHHHHHhccCCHHHHHHHH-HHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HhhHHH
Q 041816 257 TTIIDGLCKEGFVDKAKELF-LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-------VVTFNV 328 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~-~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-------~~~~~~ 328 (396)
..+++ +.-++.+|..-+ ++.... |..-|...|-.|. .|+.. ...+++++... -.-+ ..||--
T Consensus 173 LYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFY 242 (297)
T COG4785 173 LYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKIS-EETLMERLKAD-ATDNTSLAEHLTETYFY 242 (297)
T ss_pred HHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHH
Confidence 33332 223444444332 222222 3334433333322 12111 11222332221 1111 245666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 329 IMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 329 l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
+.+-+...|+.++|..+|+-.+..
T Consensus 243 L~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 243 LGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHhccccHHHHHHHHHHHHHH
Confidence 777777888888888888877654
No 290
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.48 E-value=5.5 Score=31.03 Aligned_cols=130 Identities=16% Similarity=0.113 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
+++..+.+.+++|+...+..+++.+.+.|++....++ ...++-+|.......+-.+. +....+.++--.|..+-
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 3444555566666777777777777777765544433 33343444433332221111 22233333333333221
Q ss_pred CCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
...+..+++.+...|++-+|.++.+..... +......++.+-.+.++..--..+++
T Consensus 89 ----------~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 89 ----------GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred ----------hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 113445555666666666666666554322 22222344444444444443333333
No 291
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.40 E-value=2.2 Score=29.47 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
++.+-++.+....+.|++....+.+++|.+.+++..|.++|+..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444555555555555555555555555555555444
No 292
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.33 E-value=0.24 Score=26.84 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=20.1
Q ss_pred cCCHhhHHHHHHHHhccCCHHHHH
Q 041816 250 KPNTVTYTTIIDGLCKEGFVDKAK 273 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~ 273 (396)
|.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 667888888888888888888875
No 293
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.22 E-value=7.8 Score=33.04 Aligned_cols=136 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH
Q 041816 89 EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK-----TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163 (396)
Q Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 163 (396)
+|+.+|+.....+..-.|..+-..+++.... ..-+-|.+..+. ...+-.++..+...++..+++.+++..-.+
T Consensus 146 ~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~--~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 146 EALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLV--STFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHH--hccccCCChhHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhcCCCccHHHHHHHHHHHHhcC
Q 041816 164 VLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALFTK-----LKAFGCKPNVITYSTLINGLCRTG 226 (396)
Q Consensus 164 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~g~~~~~~~~~~ll~~~~~~g 226 (396)
+++..... ++..|...|..+|+.....|+..-..++.++ +++.|+..+...-..+-..+.+.|
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~vd 292 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKVD 292 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhcC
No 294
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.99 E-value=7.8 Score=31.88 Aligned_cols=25 Identities=4% Similarity=0.037 Sum_probs=15.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC
Q 041816 296 HGFCYANDWNEANCLLIEMMDQGVQ 320 (396)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (396)
..-+..+++.+|+++|+++....+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3335567777777777777655433
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.70 E-value=0.64 Score=24.86 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNS 135 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 135 (396)
+|..+..++...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666655
No 296
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.60 E-value=5.9 Score=36.17 Aligned_cols=121 Identities=10% Similarity=0.009 Sum_probs=75.0
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
.+|+.-.|-+-....++..+..|+. ...........|+++.+.+.+...... +.....+...+++...+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3455555543333333333332333 223334456678888888887665432 2345566778888888888888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (396)
.+-+-|+...++ +..+........-..|-+|++.-.|+++....
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888888876665 44444444444445577888888888876654
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.55 E-value=1.6 Score=30.39 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=17.1
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 311 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
++.+....+.|++....+.+++|.+.+++..|.++|+..+.
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444443
No 298
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.47 E-value=3.6 Score=32.98 Aligned_cols=73 Identities=11% Similarity=-0.004 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041816 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR---GVNPNTSTFSTLMDGFCLTGRVNHAK 378 (396)
Q Consensus 305 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~ 378 (396)
+.|.+.|-.+...+.--+......|...|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555555555444444444444444444 34556666666555542 22556666666666666666666653
No 299
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.02 E-value=5.9 Score=34.09 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
+++++.++..=+..|+-||..+++.+|+.+.+.+++.+|.++.-.|
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344444444444455555555555555555555554444444443
No 300
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.82 E-value=1 Score=25.25 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 359 STFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666777777777777777766543
No 301
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.71 E-value=17 Score=33.72 Aligned_cols=177 Identities=15% Similarity=0.130 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (396)
|.....+++..+..+-.+.-++.+..+|...| -+...|..++++|... ..+.-..+|+++.+.. -.|++.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-------fnDvv~ 134 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-------FNDVVI 134 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-------chhHHH
Confidence 44445556666666666666666666666654 2555566666666666 4555566666665543 223333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHhhHHHH
Q 041816 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNIN-----PDVVTYNSLIHGFCYANDWNEANCLLIEMMD-QGVQPDVVTFNVI 329 (396)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l 329 (396)
-..|...|.+ ++...+...|..+..+-++ .-...|..++.. -..+.+..+.+...+.. .|..--...+.-+
T Consensus 135 ~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 135 GRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 3344444443 5556666666655433211 011233333321 12344555555554443 2333334445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041816 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366 (396)
Q Consensus 330 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 366 (396)
-.-|....++++|++++..+.+.. .-|...-..++.
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 555666666666666666555542 224444344443
No 302
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.70 E-value=2.5 Score=36.66 Aligned_cols=95 Identities=11% Similarity=-0.044 Sum_probs=70.3
Q ss_pred ccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 041816 75 KSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (396)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 154 (396)
+.-|+.|++.|.+++|++.+...+...+ .+++++..-..+|.+..+|..|..-.+.....+ ..-...|..-+.+-..
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P--~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYP--HNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARES 177 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCC--CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHH
Confidence 4567889999999999999999877654 488888888899999999998888777766532 1122345555555556
Q ss_pred cCChhhHHHHHHHHHhcC
Q 041816 155 MGRVSHGFVVLGRILRSC 172 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~ 172 (396)
.|...+|.+-++..++..
T Consensus 178 Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALE 195 (536)
T ss_pred HhhHHHHHHhHHHHHhhC
Confidence 677778877777777653
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.37 E-value=1.4 Score=23.52 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 359 STFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.+|..+..+|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46777888888888888888888888763
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.28 E-value=0.98 Score=25.35 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLN 134 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 134 (396)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345666666666666666666666654
No 305
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.22 E-value=16 Score=32.60 Aligned_cols=65 Identities=15% Similarity=0.054 Sum_probs=36.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP---DVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
...+|..+...+.+.|.++.|...+..+...+... +....-.-++.....|+..+|...+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666666777777766666666532111 223333344555556666666666666555
No 306
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.13 E-value=7.8 Score=31.13 Aligned_cols=73 Identities=8% Similarity=-0.103 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCccHHHHHHHHHHHHhcCChHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF---GCKPNVITYSTLINGLCRTGHTIVAL 232 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---g~~~~~~~~~~ll~~~~~~g~~~~a~ 232 (396)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+..|+..|.+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555555555544434444444444444 45666666666665543 22456666777777777777766653
No 307
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.96 E-value=3.8 Score=32.76 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=40.4
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPP---LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 154 (396)
|+.++..|++++|..-|..++..-+..+. ...|..-..++.+.+.++.|++-..+..+.+.. .......-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 44455555555555555555544332111 112333334444555555555555444443310 11112222334444
Q ss_pred cCChhhHHHHHHHHHhc
Q 041816 155 MGRVSHGFVVLGRILRS 171 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~ 171 (396)
...+++|++-|..+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 45555555555555443
No 308
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.92 E-value=3.9 Score=28.31 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 041816 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169 (396)
Q Consensus 125 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 169 (396)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555555555666666666777777777777777777766555
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.91 E-value=1.1 Score=23.83 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNS 135 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 135 (396)
.|..+..++...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555666666666666666666554
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.25 E-value=7.9 Score=31.02 Aligned_cols=57 Identities=11% Similarity=-0.005 Sum_probs=25.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
..++.+.+.++.|+.-..+..+.+ +........-..+|.+...+++|++-|+.+.+.
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~-------pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELN-------PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcC-------chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 344445555555555444444433 111222222233455555555555555555544
No 311
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.04 E-value=7.8 Score=32.77 Aligned_cols=88 Identities=14% Similarity=0.050 Sum_probs=58.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA--- 189 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 189 (396)
=|.+++..++|.+++...-+--+..-+........-|-.|.+.+++..+.++-..-++..-..+..-|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 37788888999888876655433222223344455555688888888888888877764333344446666666554
Q ss_pred --cCCHHHHHHHH
Q 041816 190 --ESRIMEAAALF 200 (396)
Q Consensus 190 --~g~~~~a~~~~ 200 (396)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 58888888777
No 312
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.94 E-value=2.1 Score=37.12 Aligned_cols=93 Identities=13% Similarity=0.077 Sum_probs=60.8
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 041816 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340 (396)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 340 (396)
+-|.+.|.+++|+..|..-...... +.+++..-..+|.+...+..|+.=....+..+ ..-...|..-+.+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 4688999999999999887765322 88888888889999888887777666665432 111223333333344445566
Q ss_pred HHHHHHHHHHhCCCCCC
Q 041816 341 EASRLLELMILRGVNPN 357 (396)
Q Consensus 341 ~A~~~~~~m~~~g~~p~ 357 (396)
+|.+=++..++ +.|+
T Consensus 183 EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHhHHHHHh--hCcc
Confidence 66665555555 4555
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.86 E-value=1.9 Score=22.75 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 359 STFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
..|..+...+...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35666777888888888888888887763
No 314
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.56 E-value=0.2 Score=38.10 Aligned_cols=87 Identities=11% Similarity=0.078 Sum_probs=56.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 041816 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337 (396)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 337 (396)
.++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++. .+..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 35666677777777778888877665555677778888888887776777766651 12233345667777777
Q ss_pred CHHHHHHHHHHHHh
Q 041816 338 KMDEASRLLELMIL 351 (396)
Q Consensus 338 ~~~~A~~~~~~m~~ 351 (396)
.+++|.-++.++-.
T Consensus 85 l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 85 LYEEAVYLYSKLGN 98 (143)
T ss_dssp SHHHHHHHHHCCTT
T ss_pred hHHHHHHHHHHccc
Confidence 77777777766543
No 315
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.53 E-value=15 Score=35.69 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=41.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhc--
Q 041816 114 FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF-TPDAVAFTSLIKGLCAE-- 190 (396)
Q Consensus 114 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-- 190 (396)
...+.-.|+|+.|++.+-+. .+...|...+...+.-| |-+......-..++.... .|...-+..||..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 44566679999999988762 22234555444444433 322222221133332211 11225577788888764
Q ss_pred -CCHHHHHHHHHHHHhcC
Q 041816 191 -SRIMEAAALFTKLKAFG 207 (396)
Q Consensus 191 -g~~~~a~~~~~~~~~~g 207 (396)
.+..+|.++|--+....
T Consensus 340 ~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFK 357 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 67889999988776653
No 316
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.52 E-value=11 Score=29.00 Aligned_cols=52 Identities=17% Similarity=0.036 Sum_probs=25.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcccccCCHhhH-HHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY-TTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
.+.++.+++..++..+.-.. |..... ..-...+...|++.+|.++|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLR--------P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR--------PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34456666666666655532 222211 22223345556666666666665544
No 317
>PRK09687 putative lyase; Provisional
Probab=87.17 E-value=19 Score=31.10 Aligned_cols=234 Identities=13% Similarity=0.102 Sum_probs=136.2
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh----hhHHHHHHHHHhcCCCCCHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV----SHGFVVLGRILRSCFTPDAVAF 180 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~ 180 (396)
++.......+..+...|. +++...+..+... +|...-...+.++.+.|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455566666666766665 3344444445432 4666666777777777764 3566666666433 3455555
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh
Q 041816 181 TSLIKGLCAESRI-----MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255 (396)
Q Consensus 181 ~~l~~~~~~~g~~-----~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (396)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+... ++..+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---------~~~~V 175 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---------PNGDV 175 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---------CCHHH
Confidence 5566666554321 223333333332 2355566667777777776 4566666666553 34445
Q ss_pred HHHHHHHHhccC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 041816 256 YTTIIDGLCKEG-FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334 (396)
Q Consensus 256 ~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 334 (396)
-...+.++.+.+ +...+...+..+... ++..+-...+.++.+.++ ..|...+-+..+.+ + .....+.++.
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg 246 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAG 246 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHH
Confidence 555555555543 234566666555532 466677777788888877 45655555555543 2 2346777788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041816 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369 (396)
Q Consensus 335 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 369 (396)
..|+. +|...+..+.+. .||..+-...+.++.
T Consensus 247 ~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 247 ELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 88875 677777777764 346666655555553
No 318
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.14 E-value=24 Score=32.29 Aligned_cols=228 Identities=12% Similarity=0.126 Sum_probs=136.6
Q ss_pred ChhHHHHHHHHHHhCCCC----CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHH-------HHHHH--
Q 041816 122 HYDTVLSLFKRLNSTGLF----PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL-------IKGLC-- 188 (396)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~-- 188 (396)
+.+++..+.+.+....+. -=..+|..++....+.++..+|.+.+.-+.... |+...-..+ -+..+
T Consensus 274 ~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~D 351 (549)
T PF07079_consen 274 DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCED 351 (549)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcc
Confidence 555666665555433211 124567888888889999999998888776543 333322221 12222
Q ss_pred --hcCCHHHHHHHHHHHHhcCCCccHHHH--HHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHH---
Q 041816 189 --AESRIMEAAALFTKLKAFGCKPNVITY--STLINGLCRTGH-TIVALNLFEEMANGNGKFGVVCKPNTVTYTTII--- 260 (396)
Q Consensus 189 --~~g~~~~a~~~~~~~~~~g~~~~~~~~--~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li--- 260 (396)
..-+...-+.+|+.....++....-+. -.-..-+.+.|. -++|+++++.+.+-. +-|...-|.+.
T Consensus 352 D~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-------~yD~ec~n~v~~fv 424 (549)
T PF07079_consen 352 DESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-------NYDIECENIVFLFV 424 (549)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-------cccHHHHHHHHHHH
Confidence 111233445566666655433221111 112233555665 789999999988743 34444333322
Q ss_pred -HHHhc---cCCHHHHHHHHHHHhhCCCCCChhh----HHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 041816 261 -DGLCK---EGFVDKAKELFLQMKDKNINPDVVT----YNSLIHG--FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330 (396)
Q Consensus 261 -~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~----~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 330 (396)
.+|.+ ...+..-..+-+-+.+.|+.|-.+. -|.|.++ +...|++.++.-.-.-+.+ +.|++.+|..+.
T Consensus 425 Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlG 502 (549)
T PF07079_consen 425 KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLG 502 (549)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHH
Confidence 23332 2344455555555667777764333 3444333 3567899988776655555 689999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041816 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365 (396)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 365 (396)
-+.....++++|..++..+ +|+..++++=+
T Consensus 503 l~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 503 LCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred HHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 9999999999999998865 77888777643
No 319
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=86.32 E-value=13 Score=31.61 Aligned_cols=90 Identities=11% Similarity=-0.035 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh-
Q 041816 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR- 224 (396)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~- 224 (396)
..-|.++++.+++.+++...-+..+.--+....+...-|-.|.+.+++..+.++-..-....-..+...|..++..|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 4458899999999999887766655433334566777788899999999999888776654222334457777666655
Q ss_pred ----cCChHHHHHHH
Q 041816 225 ----TGHTIVALNLF 235 (396)
Q Consensus 225 ----~g~~~~a~~~~ 235 (396)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 79999999887
No 320
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.19 E-value=39 Score=33.77 Aligned_cols=223 Identities=13% Similarity=0.097 Sum_probs=123.3
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHhc----CCCccHHHHHHHH
Q 041816 152 FCKMGRVSHGFVVLGRILRSCFTPDA-------VAFTSLIK-GLCAESRIMEAAALFTKLKAF----GCKPNVITYSTLI 219 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~----g~~~~~~~~~~ll 219 (396)
.....++.+|..++.++...-..|+. ..++.+-. .....|++++|.++-+..... -.......+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34568899999999888764333322 13333322 233468899999888876654 1223456677778
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh---HHHH--HHHHhccCC--HHHHHHHHHHHhhC-----CC-CC
Q 041816 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT---YTTI--IDGLCKEGF--VDKAKELFLQMKDK-----NI-NP 286 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~l--i~~~~~~g~--~~~a~~~~~~m~~~-----~~-~p 286 (396)
.+..-.|+++.|..+..+..+... .-++.. |..+ ...+...|+ +.+....|...... .. .+
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~------~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMAR------QHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHH------HcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 888889999999999888776541 223332 3333 223455663 23333333333221 10 11
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----
Q 041816 287 DVVTYNSLIHGFCYANDWNEANCL----LIEMMDQGVQPDVVT--FNVIMDELCKNGKMDEASRLLELMILRGVNP---- 356 (396)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---- 356 (396)
-..++..+..++.+ .+.+..- +.--......|-... +..|+......|+.++|...++++......+
T Consensus 579 ~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~ 655 (894)
T COG2909 579 LVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHV 655 (894)
T ss_pred HHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 22344445555544 2322222 221112211222222 2367788888999999999999888653332
Q ss_pred CHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 041816 357 NTSTFSTLMDG--FCLTGRVNHAKELFVS 383 (396)
Q Consensus 357 ~~~~~~~li~~--~~~~g~~~~A~~~~~~ 383 (396)
+...-...+.. ....|+..++.....+
T Consensus 656 ~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 656 DYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 33333333332 2457888887777665
No 321
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.01 E-value=0.33 Score=36.87 Aligned_cols=53 Identities=13% Similarity=-0.002 Sum_probs=24.1
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
....+.++..|++.+..+...++++.. +..-...++..|.+.|.++++..++.
T Consensus 42 ~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~~~a~~Ly~ 94 (143)
T PF00637_consen 42 PDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLYEEAVYLYS 94 (143)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchHHHHHHHHH
Confidence 444555555555555545554444411 11222344444555555555544443
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.75 E-value=2.9 Score=22.14 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 360 TFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566667777778888888888877665
No 323
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.55 E-value=1.9 Score=25.00 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=13.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 364 LMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 364 li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666665543
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.17 E-value=9 Score=31.20 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=57.6
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHH
Q 041816 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG--VQPDVVTFNVIMDE 332 (396)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~ 332 (396)
|.+.-++.+.+.+...+++...++-++.... |..+-..+++.+|-.|+|++|..-++-.-... ..+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455677788889999999999888776544 77778889999999999999998887766532 23345567766654
No 325
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.80 E-value=41 Score=32.88 Aligned_cols=297 Identities=12% Similarity=0.089 Sum_probs=156.4
Q ss_pred cCCCCccccCChhHHHHHHHHHHh--------cCCCCCCHhh-----HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 041816 76 SSGQGDITAITPNEAFCIFDYMLN--------MRPSPPPLTS-----FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142 (396)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 142 (396)
+.|.++.+..++++-..+.+.+.- .|+. -+..- -..+++-+...+.+..|+++-..+...-.. +.
T Consensus 394 sfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIp-lT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~ 471 (829)
T KOG2280|consen 394 SFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIP-LTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GD 471 (829)
T ss_pred hhcccccccCChHHHHHHHHHHHHHhhhcccccCcc-ccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-cc
Confidence 456777788888877766655432 1211 23222 234566677889999999998877532111 25
Q ss_pred HhHHHHHHHHHhcCCh--hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----ccHHHHH
Q 041816 143 YTYNILINCFCKMGRV--SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK----PNVITYS 216 (396)
Q Consensus 143 ~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~----~~~~~~~ 216 (396)
..|..+..-+.+..+. +++.+.+++=++... .....|..+.+-...+|+++.|..+++.=...+.. .+...+.
T Consensus 472 ~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~ 550 (829)
T KOG2280|consen 472 RVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSS 550 (829)
T ss_pred HHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHH
Confidence 6677777777766432 223333333232222 34556777777777889999998887642211100 0111223
Q ss_pred HHHHHHHhcCChHHHHHH--------------------------HHHHHhcCCC-Cc---------------ccc-----
Q 041816 217 TLINGLCRTGHTIVALNL--------------------------FEEMANGNGK-FG---------------VVC----- 249 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~--------------------------~~~~~~~~~~-~~---------------~~~----- 249 (396)
..+.-....|+.+....+ |.+..+.... .. ..+
T Consensus 551 ~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~ 630 (829)
T KOG2280|consen 551 LALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYA 630 (829)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhh
Confidence 333444444554444333 3333221100 00 000
Q ss_pred ----cCCHhhHHHHHHHHhccCCHHH-HHHHHHHHh----------hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 250 ----KPNTVTYTTIIDGLCKEGFVDK-AKELFLQMK----------DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 250 ----~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~----------~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
.+-.........++.+.....- +..+=+++. +.|......+.+--+.-+...|+-.+|.++-.+.
T Consensus 631 ~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F 710 (829)
T KOG2280|consen 631 AETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF 710 (829)
T ss_pred hhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc
Confidence 0000011112222222222111 111111111 1122223344555555666667777776666554
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 315 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
. -||-..|-.-+.+++..+++++-+++-+.+. .+.-|...+.+|.+.|+.+||.+++.+..
T Consensus 711 k----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 711 K----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred C----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 3 4777788778888888888887776655543 24556678888889999999988877653
No 326
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.58 E-value=12 Score=26.36 Aligned_cols=46 Identities=11% Similarity=0.162 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 196 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
..+-++.+....+.|++.+..+.+.+|.+.+++..|.++++..+..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444444444555555555556666666666666666666555544
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.57 E-value=1.6 Score=21.78 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=11.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 041816 362 STLMDGFCLTGRVNHAKELFV 382 (396)
Q Consensus 362 ~~li~~~~~~g~~~~A~~~~~ 382 (396)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555556666666665554
No 328
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.49 E-value=2.7 Score=24.29 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=14.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 329 IMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 329 l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666543
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.08 E-value=35 Score=31.49 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=82.0
Q ss_pred hcCCHHHH-HHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccC
Q 041816 189 AESRIMEA-AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267 (396)
Q Consensus 189 ~~g~~~~a-~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 267 (396)
..|++-.| .++++-+....-.|+.....+ ..+...|+++.+...+...... +.....+..+++....+.|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-------~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-------IGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-------hcCCchHHHHHHHhhhchh
Confidence 34665554 445566665543455444333 3466789999998888777654 3455677888889899999
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041816 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318 (396)
Q Consensus 268 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (396)
++++|..+-+.|....+. ++..........-..|-++++.-.|+++...+
T Consensus 372 r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 372 RWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999999999888877665 44444444334456677889999998887643
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.06 E-value=17 Score=27.71 Aligned_cols=53 Identities=11% Similarity=0.224 Sum_probs=37.9
Q ss_pred hccCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041816 264 CKEGFVDKAKELFLQMKDKNIN-PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318 (396)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (396)
...++.+++..+++.|.-..+. +...++...+ +...|+|.+|..+|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 3478899999999988764332 2333444443 567899999999999998764
No 331
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.98 E-value=16 Score=34.54 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=67.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 041816 116 CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195 (396)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (396)
...+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|..... |..|+-.+...|+-+.
T Consensus 646 lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 3455678888877765542 556688888888888888888888776543 3455666666777766
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 196 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
...+-....+.|. .|. +| -+|...|+++++.+++.+-.
T Consensus 711 l~~la~~~~~~g~-~N~-AF----~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 711 LAVLASLAKKQGK-NNL-AF----LAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHHHHhhcc-cch-HH----HHHHHcCCHHHHHHHHHhcC
Confidence 6666666666652 232 22 24566788888877776653
No 332
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.93 E-value=16 Score=28.82 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 041816 193 IMEAAALFTKLKAFGCKPNVITYSTLINGL 222 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 222 (396)
+++|...|++.... .|+...|+.-+...
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 34444555555444 45666666555544
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.69 E-value=3.3 Score=21.90 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNS 135 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 135 (396)
+|..+...+.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666666667777777777766654
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.51 E-value=31 Score=29.64 Aligned_cols=183 Identities=19% Similarity=0.101 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh------cC-----ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHH
Q 041816 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCR------TG-----HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~------~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 261 (396)
.++-.+..++..+.-......+|...+.++.. .| -..+|+++|--+....+ -.++-.-++.
T Consensus 103 ~ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkg--------k~v~~~~~ie 174 (361)
T COG3947 103 PEKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKG--------KEVTSWEAIE 174 (361)
T ss_pred HHHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcC--------CcccHhHHHH
Confidence 33444444444433223344556666655552 11 23578888888776542 2344555666
Q ss_pred HHhccCCHHHHHHHHHHHh-------h-------------------CCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHH
Q 041816 262 GLCKEGFVDKAKELFLQMK-------D-------------------KNINPDVVTYNSLIHGFCYA-NDWNEANCLLIEM 314 (396)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~-------~-------------------~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~~ 314 (396)
++-...+..+|...+.... . .++..|..-|...+...... -.++++.++....
T Consensus 175 ~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~y 254 (361)
T COG3947 175 ALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQY 254 (361)
T ss_pred HHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHh
Confidence 6666666666665554321 1 12334555555555544322 2355555555544
Q ss_pred HHCCCCC--------C---------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041816 315 MDQGVQP--------D---------VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377 (396)
Q Consensus 315 ~~~~~~p--------~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 377 (396)
... .-| | ..+++.....|..+|.+.+|.++.+..... -+.+...+-.++..+...|+--.|
T Consensus 255 kgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~ 332 (361)
T COG3947 255 KGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISA 332 (361)
T ss_pred cCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhh
Confidence 321 111 1 123455667889999999999999999876 355788889999999999998888
Q ss_pred HHHHHHHH
Q 041816 378 KELFVSME 385 (396)
Q Consensus 378 ~~~~~~m~ 385 (396)
.+-++++.
T Consensus 333 ~khyerya 340 (361)
T COG3947 333 IKHYERYA 340 (361)
T ss_pred hhHHHHHH
Confidence 77777664
No 335
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.30 E-value=2.6 Score=27.89 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=26.0
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCChhHHHHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPP-LTSFNLLFGCLAKTKHYDTVLSL 129 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 129 (396)
..++.++|+..|+..++....+++ ..++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666655444222 12455556666666666665554
No 336
>PHA02875 ankyrin repeat protein; Provisional
Probab=82.06 E-value=29 Score=31.86 Aligned_cols=209 Identities=17% Similarity=0.131 Sum_probs=97.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCC
Q 041816 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYT--YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV--AFTSLIKGLCAESR 192 (396)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 192 (396)
.++.|+.+-+ +.+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3455776544 44445676665432 234455556667754 445555666555432 12234555667788
Q ss_pred HHHHHHHHHHHHhcCCCccHH---HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCH
Q 041816 193 IMEAAALFTKLKAFGCKPNVI---TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (396)
.+.+..+++ .|...+.. .-...+...+..|+.+-+..+ .+.|... ..++....+ .+...+..|+.
T Consensus 81 ~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~L----l~~gad~---~~~~~~g~t-pLh~A~~~~~~ 148 (413)
T PHA02875 81 VKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLL----IARGADP---DIPNTDKFS-PLHLAVMMGDI 148 (413)
T ss_pred HHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHH----HhCCCCC---CCCCCCCCC-HHHHHHHcCCH
Confidence 776655554 33221111 112334444556665444333 3334110 011222222 33444556776
Q ss_pred HHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH---HHHHHHHHhcCCHHHHH
Q 041816 270 DKAKELFLQMKDKNINP---DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF---NVIMDELCKNGKMDEAS 343 (396)
Q Consensus 270 ~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~ 343 (396)
+.+..+++ .|..+ |..-.+.+.. .+..|+.+ +.+.+.+.|..++...- ..++...+..|+.+
T Consensus 149 ~~v~~Ll~----~g~~~~~~d~~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~--- 216 (413)
T PHA02875 149 KGIELLID----HKACLDIEDCCGCTPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID--- 216 (413)
T ss_pred HHHHHHHh----cCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH---
Confidence 65444443 33332 2223333333 34455544 44445566666654321 23444344556553
Q ss_pred HHHHHHHhCCCCCCH
Q 041816 344 RLLELMILRGVNPNT 358 (396)
Q Consensus 344 ~~~~~m~~~g~~p~~ 358 (396)
+.+.+.+.|..++.
T Consensus 217 -iv~~Ll~~gad~n~ 230 (413)
T PHA02875 217 -IVRLFIKRGADCNI 230 (413)
T ss_pred -HHHHHHHCCcCcch
Confidence 44555666776664
No 337
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=81.94 E-value=12 Score=27.43 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 307 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
..+-++.....++.|+......-+++|.+.+|+..|.++|+-.+.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344444445556666666666666666666666666666665544
No 338
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=81.83 E-value=36 Score=30.04 Aligned_cols=142 Identities=8% Similarity=0.004 Sum_probs=93.8
Q ss_pred cCCHhhHHHHHHHHhcc------------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 250 KPNTVTYTTIIDGLCKE------------GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
|-|+.+|-.++..--.. .-.+.-+.++++..+.+. -+...+..++..+.+..+.++..+.|+++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56777887777543222 124556677888777754 37777888899999999999999999999976
Q ss_pred CCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHhC------CC----CCC----H---HHHHHHHHHHHhcCCHHHH
Q 041816 318 GVQPDVVTFNVIMDELCK---NGKMDEASRLLELMILR------GV----NPN----T---STFSTLMDGFCLTGRVNHA 377 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~------g~----~p~----~---~~~~~li~~~~~~g~~~~A 377 (396)
. +-+...|...++.... .-.++....+|.+..+. +. .+. . .++..+...+...|..+.|
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 3 2256777777776554 23566666666655432 11 111 1 2233333344678999999
Q ss_pred HHHHHHHHhCCC-CCCc
Q 041816 378 KELFVSMESMGC-KHTV 393 (396)
Q Consensus 378 ~~~~~~m~~~g~-~p~~ 393 (396)
..+|+-+.+.++ .|+.
T Consensus 174 va~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 174 VALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHHHHHHHcCCccc
Confidence 999999998776 4543
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.80 E-value=3.1 Score=21.70 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 362 STLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 362 ~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
-.+..++.+.|++++|.+.|+++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566777788888888888888763
No 340
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.46 E-value=62 Score=32.45 Aligned_cols=201 Identities=16% Similarity=0.084 Sum_probs=109.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccH-------HHHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHH
Q 041816 189 AESRIMEAAALFTKLKAFGCKPNV-------ITYSTLI-NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 260 (396)
...++++|..++.++...-..|+. ..|+.+- ......|++++|.++.+.....-.. ....+....+..+.
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~--~~~~~r~~~~sv~~ 504 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE--AAYRSRIVALSVLG 504 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc--ccchhhhhhhhhhh
Confidence 457899999998887654222221 2333332 2344578889999888877654210 00234566777888
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCCChhhH---HHHH--HHHHhcCC--HHHHHHHHHHHHHC--CCC----CCHhhHH
Q 041816 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTY---NSLI--HGFCYAND--WNEANCLLIEMMDQ--GVQ----PDVVTFN 327 (396)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~li--~~~~~~~~--~~~a~~~~~~~~~~--~~~----p~~~~~~ 327 (396)
.+..-.|++++|..+..+..+..-.-+...+ ..+. ..+...|+ +.+....+...... .-+ +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888899999999988876553222233332 2222 23445563 33333333333321 011 1233455
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041816 328 VIMDELCKN-GKMDEASRLLELMILRGVNPNTSTF--STLMDGFCLTGRVNHAKELFVSMESMGCKH 391 (396)
Q Consensus 328 ~l~~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 391 (396)
.++.++.+. +...++..-++--......|-...+ ..|+......|+.++|...++++......+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 555555552 1222222223222222222222222 256778888999999999999988754443
No 341
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=81.07 E-value=35 Score=29.44 Aligned_cols=83 Identities=17% Similarity=0.017 Sum_probs=47.3
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----c
Q 041816 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA----ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR----T 225 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~ 225 (396)
..+++..+...+......+ +......+...|.. ..+..+|..+|...-+.| .......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4466777777777766543 22334444444433 245667777777666655 23334445555554 3
Q ss_pred CChHHHHHHHHHHHhcC
Q 041816 226 GHTIVALNLFEEMANGN 242 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~ 242 (396)
.+..+|..++++..+.+
T Consensus 127 ~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 127 LDLVKALKYYEKAAKLG 143 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 36667777777777666
No 342
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.88 E-value=31 Score=28.67 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=83.1
Q ss_pred ccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHh-HHHHHHHHH
Q 041816 75 KSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT-YNILINCFC 153 (396)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~li~~~~ 153 (396)
+.-|..+....++++|+..+.+.+...|. .+..|..-+.++.+.++++.+..--.+.++. .||..- ...+..+..
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~--~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPT--VASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLL 89 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCC--cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHH
Confidence 34567777888899999988888876553 4567778888899999999888887777763 466553 334555667
Q ss_pred hcCChhhHHHHHHHHHh----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 154 KMGRVSHGFVVLGRILR----SCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 202 (396)
....+++|+..+.+... ..+.+-..+...|..+--+.=...+..++.++
T Consensus 90 ~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred hhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77889999988887743 33444555566665554333334444444433
No 343
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=80.83 E-value=36 Score=29.38 Aligned_cols=154 Identities=12% Similarity=0.044 Sum_probs=101.1
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK----TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 154 (396)
......+++..|...+......+ +......+...+.. ..+..+|.++|..+.+.|. ......|...|..
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~ 121 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYAN 121 (292)
T ss_pred ccccccccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhc
Confidence 34456677888888888886633 22344444444443 3468889999998877763 3333445555544
Q ss_pred ----cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 041816 155 ----MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES-------RIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223 (396)
Q Consensus 155 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 223 (396)
..+..+|..+|....+.|..+.......+...|.... +...|...|.+.-..+ +......+...|.
T Consensus 122 G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~ 198 (292)
T COG0790 122 GRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYE 198 (292)
T ss_pred CCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHH
Confidence 3488999999999999885543333445555554431 2347889999888876 4445555555554
Q ss_pred h----cCChHHHHHHHHHHHhcC
Q 041816 224 R----TGHTIVALNLFEEMANGN 242 (396)
Q Consensus 224 ~----~g~~~~a~~~~~~~~~~~ 242 (396)
. ..+.++|..+|+...+.+
T Consensus 199 ~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 199 KGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred cCCCCCcCHHHHHHHHHHHHHCC
Confidence 4 347889999999998877
No 344
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.67 E-value=35 Score=29.16 Aligned_cols=126 Identities=17% Similarity=0.134 Sum_probs=71.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHh-------HHHHHHHHHhcCChhhHHHHHHHHHh----cCCCCCHHHHH
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT-------YNILINCFCKMGRVSHGFVVLGRILR----SCFTPDAVAFT 181 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-------~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 181 (396)
+.+...+.+++++|+..+.++...|+..|..+ ...+...|...|+...--+......+ ..-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 34445566778888888888887776655443 34566677777776554444332221 11122344555
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhcCCCcc-----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 182 SLIKGLCAE-SRIMEAAALFTKLKAFGCKPN-----VITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 182 ~l~~~~~~~-g~~~~a~~~~~~~~~~g~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
+|+..+-.. ..++..+.+.....+....-+ ...-.-++..+.+.|.+.+|+.+...+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 566555433 345666665555544321111 112235678889999999998766544
No 345
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.18 E-value=29 Score=27.84 Aligned_cols=89 Identities=13% Similarity=0.054 Sum_probs=61.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041816 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTF-----NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369 (396)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 369 (396)
...+...|++++|..-++..... |....+ -.|.+.....|.+|+|+..++.....+. .......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 45667888888888888877753 222223 3345566778888888888887765432 2333445567788
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 041816 370 LTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 370 ~~g~~~~A~~~~~~m~~~g 388 (396)
..|+-++|..-|++....+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8889899988888888765
No 346
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.47 E-value=53 Score=30.50 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=73.2
Q ss_pred HHHhccCCHHHHHHHHHHHh---hCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC---
Q 041816 261 DGLCKEGFVDKAKELFLQMK---DKNINPD-----VVTYNSLIHGFCYANDWNEANCLLIEMMD-------QGVQPD--- 322 (396)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~m~---~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~p~--- 322 (396)
..+.-.|++.+|.+++...- ..|...+ -..||.|.-.+.+.|.+.-+..+|.+..+ .|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34556799999999886642 1221112 22356666666777888877777777663 354442
Q ss_pred --------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041816 323 --------VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370 (396)
Q Consensus 323 --------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 370 (396)
..+||. .-.|...|++-.|.+.|.+...- +..++..|-.|..+|..
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 223443 23467889999999999998875 67789999999998864
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.31 E-value=40 Score=28.97 Aligned_cols=110 Identities=19% Similarity=0.140 Sum_probs=73.8
Q ss_pred cCCHhhHHHHHHHHhc-cCCHHHHHHHHHHHhhCCCCC-------C---------hhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 250 KPNTVTYTTIIDGLCK-EGFVDKAKELFLQMKDKNINP-------D---------VVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p-------~---------~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
.-|+.-|-..++.... ...++++.++.......-++- | ..+++...+.|..+|.+.+|..+.+
T Consensus 224 k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~q 303 (361)
T COG3947 224 KYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQ 303 (361)
T ss_pred cccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4456666666554433 245666666666654221110 1 1234556688999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 041816 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL-----RGVNPNTST 360 (396)
Q Consensus 313 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 360 (396)
.....+ +.+...+-.++..+...|+--.|.+-++.+.+ .|+..+-..
T Consensus 304 r~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 304 RALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 998764 56778889999999999998888888877754 255554433
No 348
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=79.11 E-value=60 Score=30.87 Aligned_cols=103 Identities=14% Similarity=0.070 Sum_probs=59.1
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCCHHHHHH---HHHHHHHCCCCCCHhhHHHHHH-----HHHh
Q 041816 265 KEGFVDKAKELFLQMKDKNINPDVV-TYNSLIHGFCYANDWNEANC---LLIEMMDQGVQPDVVTFNVIMD-----ELCK 335 (396)
Q Consensus 265 ~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~---~~~~~~~~~~~p~~~~~~~l~~-----~~~~ 335 (396)
..|+++.|..+++.+...- |+.. .-..-+....+.|..+.+.. ++...... .-+..+...+.- .+.-
T Consensus 378 ~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred hhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHH
Confidence 3577888888888776653 3321 22222333445666666663 22222221 112222222221 2334
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 041816 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 372 (396)
.++.+.|..++.++.+. ++++...|..++......+
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 67889999999999887 6778888888888776655
No 349
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.78 E-value=20 Score=33.87 Aligned_cols=101 Identities=14% Similarity=0.026 Sum_probs=51.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041816 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198 (396)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 198 (396)
-.|+...|...+.........-..+....|.+...+.|....|..++.+.+... .....++-.+.++|....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 346666666655554432211122233344445555555556666665555443 2234455556666666666666666
Q ss_pred HHHHHHhcCCCccHHHHHHHHHH
Q 041816 199 LFTKLKAFGCKPNVITYSTLING 221 (396)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~ll~~ 221 (396)
.|+...+.. +.+.+.-+.|...
T Consensus 698 ~~~~a~~~~-~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 698 AFRQALKLT-TKCPECENSLKLI 719 (886)
T ss_pred HHHHHHhcC-CCChhhHHHHHHH
Confidence 666655543 2234444444433
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.84 E-value=22 Score=29.06 Aligned_cols=75 Identities=15% Similarity=0.132 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCCCHHHHHHHHH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC--FTPDAVAFTSLIK 185 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~ 185 (396)
.+..++.+.+.++.++++...++-.+.+ +-|...-..++..+|-.|++++|..-++-.-+.. ..+....|..+|+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445566666777777777766655543 2355555667777777777777765555444322 1223445555554
No 351
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.63 E-value=22 Score=28.02 Aligned_cols=109 Identities=16% Similarity=0.081 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHh---ccCC-------HHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041816 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC---KEGF-------VDKAKELFLQMKDKNINPDVVTYNSLIHGF 298 (396)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 298 (396)
+.|.+.++.....+ +.|...++.-..++. +... +++|+.-|++....++. ...++..+..+|
T Consensus 8 E~ark~aea~y~~n-------P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ 79 (186)
T PF06552_consen 8 EHARKKAEAAYAKN-------PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDALWCLGNAY 79 (186)
T ss_dssp HHHHHHHHHHHHH--------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-------cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 44555555544443 455555444333333 2333 33444444554444322 346777777777
Q ss_pred HhcC----C-------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 299 CYAN----D-------WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353 (396)
Q Consensus 299 ~~~~----~-------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 353 (396)
...+ + +++|...|+.... ..|+..+|+.-+.... +|-++..++.+.+
T Consensus 80 ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 80 TSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 5443 2 5556666666655 4699999988887763 4666666666553
No 352
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=77.61 E-value=40 Score=28.02 Aligned_cols=102 Identities=21% Similarity=0.228 Sum_probs=65.2
Q ss_pred HhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-----------CCCCHhhHHHHH
Q 041816 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-G-----------VQPDVVTFNVIM 330 (396)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-----------~~p~~~~~~~l~ 330 (396)
|.+..+..--.++.+-....++.-+......++ +...|++.+|+.-++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 555555555556666556566665555666655 34688898888887764421 1 146666666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041816 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368 (396)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 368 (396)
..|.+ +++++|.+++.++-+.|+.|.-. .+.+.+.+
T Consensus 247 ~~~~~-~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 247 QACLK-RNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred HHHHh-ccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 66554 67899999999988888876433 33444443
No 353
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.46 E-value=22 Score=24.95 Aligned_cols=78 Identities=24% Similarity=0.236 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (396)
.++|..+-+++...+.. .-.+--.-+..+...|+|++|+.+.+.+ ..||...|..|.. .+.|..++...-+.
T Consensus 21 HqEA~tIAdwL~~~~~~--~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 21 HQEANTIADWLHLKGES--EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHhcCCch--HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 56777777777554321 1111222244566777888887776665 2577776665543 35566666666666
Q ss_pred HHHhcC
Q 041816 167 RILRSC 172 (396)
Q Consensus 167 ~~~~~~ 172 (396)
++...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 666655
No 354
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.13 E-value=39 Score=27.14 Aligned_cols=88 Identities=13% Similarity=0.057 Sum_probs=44.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccHHHHH-----HHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHH
Q 041816 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYS-----TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (396)
..+...|++++|+.-++..... +....+. .|.......|..++|+.+++.....+ -.......-
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--------w~~~~~elr 165 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--------WAAIVAELR 165 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--------HHHHHHHHh
Confidence 3455666666666666655543 1111222 23344555666666666666544322 011122233
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCC
Q 041816 260 IDGLCKEGFVDKAKELFLQMKDKN 283 (396)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~~ 283 (396)
..++...|+.++|..-|+.....+
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHcc
Confidence 445566666666666666665543
No 355
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=75.55 E-value=13 Score=27.54 Aligned_cols=45 Identities=18% Similarity=0.081 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 041816 124 DTVLSLFKRLNSTGLFP-DLYTYNILINCFCKMGRVSHGFVVLGRI 168 (396)
Q Consensus 124 ~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 168 (396)
+.+.++|..|...|+-- -+..|......+...|++++|.++|...
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 37888888887766543 3455677777788888888888887653
No 356
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=75.09 E-value=38 Score=32.74 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041816 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMD 366 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 366 (396)
.|++.+|.+.+-.+.+.++.|...-...|.+
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp -------------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 3677777777766666656655544444443
No 357
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.92 E-value=61 Score=28.39 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=38.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 041816 147 ILINCFCKMGRVSHGFVVLGRILRSCFTP-DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210 (396)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 210 (396)
.+.-+..+.|+..+|.+.++++.+.-.-. -..+...|+.++....-+.++..++.+..+...+.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPk 344 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPK 344 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcc
Confidence 34455567788888888888776643211 12233456777777666666666666665554433
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.89 E-value=13 Score=24.63 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=20.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHH
Q 041816 300 YANDWNEANCLLIEMMDQGVQPD--VVTFNVIMDELCKNGKMDEASR 344 (396)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 344 (396)
..++-++|+..|....+.-..+. ..++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544322211 1234444555555555544443
No 359
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=73.40 E-value=23 Score=28.47 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=22.3
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 320 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
.|+..+|..++..+...|+.++|.+..+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566666666677777777777776666666653
No 360
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=73.33 E-value=50 Score=27.12 Aligned_cols=64 Identities=13% Similarity=-0.020 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhcCCH-------HHHHHHHHHHHhCCCCC----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 325 TFNVIMDELCKNGKM-------DEASRLLELMILRGVNP----N-TSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 325 ~~~~l~~~~~~~g~~-------~~A~~~~~~m~~~g~~p----~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
.+--+...|...|+- ..|.+.|.+..+..-.| + ..+.-.+.....+.|+.++|.++|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 344455555556653 33555555555432111 2 2333344456677788888888888877644
No 361
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=73.10 E-value=13 Score=23.48 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 041816 363 TLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 363 ~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555554443
No 362
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.38 E-value=1.2e+02 Score=30.95 Aligned_cols=116 Identities=12% Similarity=0.051 Sum_probs=70.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCCHHhHHHHHHHHHhcCCh--hhHHHHHHHHHhcCCCCCHHHHH--
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGL---FPDLYTYNILINCFCKMGRV--SHGFVVLGRILRSCFTPDAVAFT-- 181 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~-- 181 (396)
-|..|+..|...|+.++|++++.+.....- .--...+..++.-+.+.+.. +-..++-+...+....-...++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 378899999999999999999999876320 01112233455555555544 44555544444433211111111
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 041816 182 ----------SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224 (396)
Q Consensus 182 ----------~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 224 (396)
..+-.|......+.+..+++.+....-..+....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1233455667778888999988876555677777777777765
No 363
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.73 E-value=62 Score=27.49 Aligned_cols=193 Identities=11% Similarity=0.067 Sum_probs=97.7
Q ss_pred CChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChhhHHHHHHHHHh---cCC--CCCHHHHHHHHHHHHhcCC
Q 041816 121 KHYDTVLSLFKRLNSTGLFPD---LYTYNILINCFCKMGRVSHGFVVLGRILR---SCF--TPDAVAFTSLIKGLCAESR 192 (396)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~g~ 192 (396)
...++|+.-|.+..+..-+.. -.....+|....+.|++++..+.|.+++. ..+ .-+....|.++.......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 345555555555544211111 12233455555666666666666655542 111 1234455666665555555
Q ss_pred HHHHHHHHHHHHhc-CCCccHH----HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCccc--c---cCCHhhHHHHHHH
Q 041816 193 IMEAAALFTKLKAF-GCKPNVI----TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV--C---KPNTVTYTTIIDG 262 (396)
Q Consensus 193 ~~~a~~~~~~~~~~-g~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~---~~~~~~~~~li~~ 262 (396)
.+....+|+.-.+. .-..+.. |-.-+...|...|++.+..++++++......-... . ..-...|..-|.+
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 55555554432221 0001211 22456667777777777777777775443110000 0 1113467777888
Q ss_pred HhccCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHH-----HhcCCHHHHHHHHHHH
Q 041816 263 LCKEGFVDKAKELFLQMKDK-NINPDVVTYNSLIHGF-----CYANDWNEANCLLIEM 314 (396)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~-----~~~~~~~~a~~~~~~~ 314 (396)
|....+-.....++++.... ..-|.+... .+|+-| .+.|++++|-.-|-++
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHH
Confidence 88888888888888876532 222343332 333333 3556777765544333
No 364
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=71.66 E-value=1.1e+02 Score=30.09 Aligned_cols=154 Identities=15% Similarity=0.117 Sum_probs=91.1
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHh-----hHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCHHhHHHH-HHHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLT-----SFNLLFGCLAKTKHYDTVLSLFKRLNSTG----LFPDLYTYNIL-INCF 152 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~l-i~~~ 152 (396)
...+++.|...+++....... ++.. +-..++..+.+.+... |...+++..+.- ..+-...|..+ +..+
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~ 149 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLA 149 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 445689999998887554332 2222 2345566677766655 998888875531 11222333333 3333
Q ss_pred HhcCChhhHHHHHHHHHhcC---CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcC---------CCccHHHHHHH
Q 041816 153 CKMGRVSHGFVVLGRILRSC---FTPDAVAFTSLIKGLC--AESRIMEAAALFTKLKAFG---------CKPNVITYSTL 218 (396)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~g---------~~~~~~~~~~l 218 (396)
...++...|.+.++.+.... ..|...++-.++.+.. +.+..+++.+..+++.... ..|...+|..+
T Consensus 150 ~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~ll 229 (608)
T PF10345_consen 150 LQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLL 229 (608)
T ss_pred HhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 33479999999998886532 3444555555555544 3455677777777664322 13456777777
Q ss_pred HHHHH--hcCChHHHHHHHHHH
Q 041816 219 INGLC--RTGHTIVALNLFEEM 238 (396)
Q Consensus 219 l~~~~--~~g~~~~a~~~~~~~ 238 (396)
++.++ ..|+++.+...++++
T Consensus 230 l~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 230 LDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 77655 467766666555544
No 365
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.15 E-value=81 Score=28.58 Aligned_cols=166 Identities=13% Similarity=0.051 Sum_probs=90.9
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCcc
Q 041816 143 YTYNILINCFCKMGRVSHGFVVLGRILRSC--FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG---------CKPN 211 (396)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g---------~~~~ 211 (396)
..+.-+...|...|+++.|++.|.+...-- .......|-.+|..-.-.|+|.....+..+....- +++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 356677888999999999999999855421 12235556667777777888888888777776541 2222
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHH-----HHHHHHhhCCCCC
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK-----ELFLQMKDKNINP 286 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-----~~~~~m~~~~~~p 286 (396)
...+..+.... .+++..|.+.|-........+...+.|..++....+.+..--+.-+--. ..|+.+.+.
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel---- 304 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL---- 304 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc----
Confidence 33333333333 3366666665544433222222223343333333333433333222211 223333332
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
.+..+..+..-| .+++..++++++++..
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 444555555554 4678888888887764
No 366
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.99 E-value=33 Score=24.08 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
.++|..+-+-+...+.. ....--+-+..+.+.|+|++|..+.+.. ..||...|-+|-. .+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45555555444443311 1111122223344556666665554433 2455555544422 344555555555555
Q ss_pred HHhCC
Q 041816 349 MILRG 353 (396)
Q Consensus 349 m~~~g 353 (396)
|..+|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 55443
No 367
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.96 E-value=44 Score=25.42 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHH
Q 041816 290 TYNSLIHGFCYANDWNEANCLLIEMMDQG-----VQPDVVTFNVIMDELCKNGK-MDEASRLLELMILRGVNPNTSTFST 363 (396)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ 363 (396)
..|.++......+++.....+++.+.... -..+..+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 35667776677777777777777664321 12355678888888876665 4456778888888778889999999
Q ss_pred HHHHHHhcCC
Q 041816 364 LMDGFCLTGR 373 (396)
Q Consensus 364 li~~~~~~g~ 373 (396)
+|.++.+--.
T Consensus 121 li~~~l~g~~ 130 (145)
T PF13762_consen 121 LIKAALRGYF 130 (145)
T ss_pred HHHHHHcCCC
Confidence 9988866533
No 368
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.73 E-value=86 Score=28.73 Aligned_cols=203 Identities=14% Similarity=0.065 Sum_probs=100.0
Q ss_pred HHHHHHHhcCCCCCCHh--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhcCChhhHHHHHHH
Q 041816 92 CIFDYMLNMRPSPPPLT--SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY--TYNILINCFCKMGRVSHGFVVLGR 167 (396)
Q Consensus 92 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~ 167 (396)
++++.+++.|.. ++.. .....+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..++
T Consensus 16 ~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll-- 88 (413)
T PHA02875 16 DIARRLLDIGIN-PNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL-- 88 (413)
T ss_pred HHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH--
Confidence 445555666654 3332 2334455666777765 444555666555432 1223455566778877655544
Q ss_pred HHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 168 ILRSCFTPDAV---AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT--YSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 168 ~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
+.|...+.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+.+..+++ .+
T Consensus 89 --~~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~----~g 158 (413)
T PHA02875 89 --DLGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID----HK 158 (413)
T ss_pred --HcCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----cC
Confidence 333221111 1123444555667765 4444455565554321 1234445566777766555544 33
Q ss_pred CCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 041816 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT---YNSLIHGFCYANDWNEANCLLIEMMDQGV 319 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 319 (396)
... -..|..-++.|. ..+..|+.+- .+.+.+.|..++... ..+++...+..|+.+ +.+.+.+.|.
T Consensus 159 ~~~---~~~d~~g~TpL~-~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ga 226 (413)
T PHA02875 159 ACL---DIEDCCGCTPLI-IAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGA 226 (413)
T ss_pred CCC---CCCCCCCCCHHH-HHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCc
Confidence 110 012333333433 3345566554 444555666555432 124444445666654 4555567787
Q ss_pred CCCH
Q 041816 320 QPDV 323 (396)
Q Consensus 320 ~p~~ 323 (396)
.++.
T Consensus 227 d~n~ 230 (413)
T PHA02875 227 DCNI 230 (413)
T ss_pred Ccch
Confidence 7764
No 369
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.36 E-value=66 Score=30.68 Aligned_cols=113 Identities=11% Similarity=-0.045 Sum_probs=71.4
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 041816 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330 (396)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 330 (396)
|-....|...-.+.-.|+...|.+.+.........-..+....|.+...+.|....|-.++.+..... ....-++-.+.
T Consensus 605 p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g 683 (886)
T KOG4507|consen 605 PIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLG 683 (886)
T ss_pred CeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcc
Confidence 33344443333344568888888887776544333344455566666667777777888877766543 33445667778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041816 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365 (396)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 365 (396)
+++....++++|++.|+...+.. +.+.+.-+.|.
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~ 717 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLT-TKCPECENSLK 717 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHH
Confidence 88888888999998888887752 22444444443
No 370
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=69.04 E-value=8.1 Score=19.10 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNS 135 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 135 (396)
.|..+..++...+++++|...++...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345555566666666666666665544
No 371
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=68.98 E-value=40 Score=26.74 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHhcCCCCCCH-hh-----HHHHHHHHHhcCChhHHHHHHHHHHh
Q 041816 87 PNEAFCIFDYMLNMRPSPPPL-TS-----FNLLFGCLAKTKHYDTVLSLFKRLNS 135 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~-~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~ 135 (396)
++.|+.+|+.+.+..+.+.+. .. --..+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 567777777776654431111 01 11122345566666666666666554
No 372
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.84 E-value=40 Score=24.84 Aligned_cols=43 Identities=9% Similarity=0.166 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 205 (396)
+.+..+....+.|+..+...-+++|-+.+++..|.++|+.++.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555443
No 373
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=68.64 E-value=50 Score=25.15 Aligned_cols=43 Identities=9% Similarity=-0.049 Sum_probs=19.9
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 041816 132 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 175 (396)
Q Consensus 132 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 175 (396)
.+.+.|++++.. -..++..+.+.++.-.|.++|+.+.+.++..
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~i 53 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGI 53 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCC
Confidence 334444443332 2334444444444455555555555544443
No 374
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=68.61 E-value=1.2e+02 Score=29.64 Aligned_cols=193 Identities=16% Similarity=0.124 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHHhcCCCCCCH--hhHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCHH-----hHHHHHHHHHhcCCh
Q 041816 87 PNEAFCIFDYMLNMRPSPPPL--TSFNLLFGCLA-KTKHYDTVLSLFKRLNSTGLFPDLY-----TYNILINCFCKMGRV 158 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~p~~~-----~~~~li~~~~~~g~~ 158 (396)
...|+..++.+.+....+|.. .++-.+...+. ...++++|...+++.....-.++.. .-..++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 445677777777533333433 34555666666 6789999999999875432222221 223456667776665
Q ss_pred hhHHHHHHHHHhcC----CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHh--cCCh
Q 041816 159 SHGFVVLGRILRSC----FTPDAVAFTSL-IKGLCAESRIMEAAALFTKLKAFG---CKPNVITYSTLINGLCR--TGHT 228 (396)
Q Consensus 159 ~~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~ll~~~~~--~g~~ 228 (396)
. |...+++.++.- ..+-...|..+ +..+...++...|.+.++.+...- ..+...++..++.+... .+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 888888876532 12223334444 333334479999999998876542 23445555555555443 4556
Q ss_pred HHHHHHHHHHHhcCCCC---cccccCCHhhHHHHHHHH--hccCCHHHHHHHHHHHh
Q 041816 229 IVALNLFEEMANGNGKF---GVVCKPNTVTYTTIIDGL--CKEGFVDKAKELFLQMK 280 (396)
Q Consensus 229 ~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~ 280 (396)
+++.+.++.+....... +....|-..+|..++..+ ...|+++.+...++++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777764332111 001245566777777654 45777777777766653
No 375
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=68.44 E-value=80 Score=27.43 Aligned_cols=69 Identities=16% Similarity=0.430 Sum_probs=36.8
Q ss_pred hccCCHHHHHHHHHH-HhhCCCCCChh----hHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHhhHHHHHHHHHhcC
Q 041816 264 CKEGFVDKAKELFLQ-MKDKNINPDVV----TYNSLIHGFCYANDWNEANCLL-IEMMDQGVQPDVVTFNVIMDELCKNG 337 (396)
Q Consensus 264 ~~~g~~~~a~~~~~~-m~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g 337 (396)
.+...+++.....++ |.+.++ |+.. .|..++++ .+|.+-.++. +.+++ ...+|..|+.+++..|
T Consensus 266 s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsa----veWnKkeelva~qalr-----hlK~yaPLL~af~s~g 335 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSA----VEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQG 335 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHH----HhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCC
Confidence 334455555554444 454444 4543 45666554 3343333322 22222 2457888888888888
Q ss_pred CHHHH
Q 041816 338 KMDEA 342 (396)
Q Consensus 338 ~~~~A 342 (396)
+.+..
T Consensus 336 ~sEL~ 340 (412)
T KOG2297|consen 336 QSELE 340 (412)
T ss_pred hHHHH
Confidence 77654
No 376
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.21 E-value=51 Score=25.08 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRL 133 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~ 133 (396)
.|.++.-.+..+++...+.+++.+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHH
Confidence 455555555555555555555555
No 377
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.99 E-value=22 Score=22.32 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=12.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 041816 217 TLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
.++.+|...|++++|.++++++..
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345556666666666655555443
No 378
>PRK10941 hypothetical protein; Provisional
Probab=67.37 E-value=36 Score=29.11 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCCHHHHHHHHHHHH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF-TPDAVAFTSLIKGLC 188 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 188 (396)
.+.+-.+|.+.++++.|+.+.+.+.... +.+..-+.--.-.|.+.|.+..|..=++..++..+ .|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 3445666777788888888888877654 22444455555567778888888777777766532 344555544444443
No 379
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=66.68 E-value=90 Score=27.39 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhhCCCCC-------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHH
Q 041816 267 GFVDKAKELFLQMKDKNINP-------------DVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-GVQPDVVTFNVIMDE 332 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~~~~p-------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~ 332 (396)
++.+....+++.+.+.+..| |...++.|..+ +....++-.+..+...+. |-.--...+.....-
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeY 113 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEY 113 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041816 333 LCKNGKMDEASRLLELMILR----GVNPNTSTFSTLMD-GFCLTGRVNHAKELFVSMESMGCKHT 392 (396)
Q Consensus 333 ~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~ 392 (396)
|++.|+.+.|.+.+.+..++ |.+.|+..+..-+. .|..+.-..+-++..+.|.+.|...+
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWe 178 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWE 178 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChh
No 380
>PRK09687 putative lyase; Provisional
Probab=66.41 E-value=86 Score=27.06 Aligned_cols=219 Identities=10% Similarity=-0.023 Sum_probs=139.0
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhcCCCccHHHH
Q 041816 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI----MEAAALFTKLKAFGCKPNVITY 215 (396)
Q Consensus 140 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~g~~~~~~~~ 215 (396)
+|.......+.++...|. +++...+..+.+. +|...=...+.++...|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 566666677777777765 3344444444433 3555555666777777763 5677777776433 4566666
Q ss_pred HHHHHHHHhcCCh-----HHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhh
Q 041816 216 STLINGLCRTGHT-----IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290 (396)
Q Consensus 216 ~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 290 (396)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++. ++...+-.+.+. +|...
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---------D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~V 175 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---------DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDV 175 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---------CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHH
Confidence 6667776665432 233444433332 34667777888888888874 566666666653 35555
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041816 291 YNSLIHGFCYAN-DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369 (396)
Q Consensus 291 ~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 369 (396)
-...+.++.+.+ +...+...+..+.. .+|..+-...+.++.+.|+. .|...+-+..+.+ + .....+.++.
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg 246 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAG 246 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHH
Confidence 555566666543 24467777776664 46777788889999999984 5666666666543 2 2456788899
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 041816 370 LTGRVNHAKELFVSMESM 387 (396)
Q Consensus 370 ~~g~~~~A~~~~~~m~~~ 387 (396)
..|.. +|...+..+.+.
T Consensus 247 ~ig~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 247 ELGDK-TLLPVLDTLLYK 263 (280)
T ss_pred hcCCH-hHHHHHHHHHhh
Confidence 99986 688888888763
No 381
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.32 E-value=1e+02 Score=27.95 Aligned_cols=182 Identities=11% Similarity=0.066 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCcccccC
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGC--KPNVITYSTLINGLCRTGHTIVALNLFEEMANGN---GKFGVVCKP 251 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~ 251 (396)
...+.-+..-|..+|+++.|++.|.+.++.-. .-.+..|-.+|..-.-.|++........+..... ......+++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 45677888999999999999999999766421 1234456667777777888888877777776541 000011233
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHhhCC------CCCChhhHHHHHHHHHhcCCHHHHHH-----HHHHHHHCCCC
Q 041816 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN------INPDVVTYNSLIHGFCYANDWNEANC-----LLIEMMDQGVQ 320 (396)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~li~~~~~~~~~~~a~~-----~~~~~~~~~~~ 320 (396)
-...+..+..... ++++.|.+.|-...... +.|...+....+.+.+.-++-+--.. .|+...+
T Consensus 230 kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle---- 303 (466)
T KOG0686|consen 230 KLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE---- 303 (466)
T ss_pred chHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh----
Confidence 3344444444333 47777776665443221 22333333333334333332221111 1222222
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHH
Q 041816 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILR-----GVNPNTSTFSTLMD 366 (396)
Q Consensus 321 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~li~ 366 (396)
..+.....+...|. +++...+++++++..+ -+.|.+.+.-.+|+
T Consensus 304 l~Pqlr~il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 304 LEPQLREILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred cChHHHHHHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 22333444444333 4677777777777653 23455555444443
No 382
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=64.51 E-value=1e+02 Score=27.24 Aligned_cols=119 Identities=11% Similarity=-0.002 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh---cCCH
Q 041816 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY---ANDW 304 (396)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~~~~ 304 (396)
.+.-+.+++++.+.+ +.+...+..++..+.+..+.++..+.++++...... +...|...+..... .-.+
T Consensus 47 ~E~klsilerAL~~n-------p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v 118 (321)
T PF08424_consen 47 AERKLSILERALKHN-------PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTV 118 (321)
T ss_pred HHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcH
Confidence 345677888888775 567888888999999999999999999999887544 67777777776544 2346
Q ss_pred HHHHHHHHHHHHC------CC----CCCHh-------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041816 305 NEANCLLIEMMDQ------GV----QPDVV-------TFNVIMDELCKNGKMDEASRLLELMILRGV 354 (396)
Q Consensus 305 ~~a~~~~~~~~~~------~~----~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 354 (396)
+....+|.+.+.. +. .+-.. .+..+...+..+|-.+.|..+++.+.+..+
T Consensus 119 ~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 119 SDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6666666655421 11 01111 223333445678999999999999988644
No 383
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.42 E-value=27 Score=20.58 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=19.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041816 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366 (396)
Q Consensus 334 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 366 (396)
.+.|-++++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344555566666666666666666555555443
No 384
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.00 E-value=96 Score=26.75 Aligned_cols=97 Identities=11% Similarity=0.136 Sum_probs=59.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHhhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--
Q 041816 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMD----QGVQPDVVTFN-VIMDELCKNGKMDEASRLLELMILRGVNPNTS-- 359 (396)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 359 (396)
....+..+...|++.++.+.+.+...+..+ .|.+.|..... .|.-.|....-+++-++..+.|.++|...+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 456677788888888888888877766553 46666654322 23333444445677778888888887655432
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 360 --TFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 360 --~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
+|..+. +....++.+|-.++-+..
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 333222 233456777777776654
No 385
>PRK09857 putative transposase; Provisional
Probab=63.68 E-value=54 Score=28.50 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=12.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041816 364 LMDGFCLTGRVNHAKELFVSMESMGCK 390 (396)
Q Consensus 364 li~~~~~~g~~~~A~~~~~~m~~~g~~ 390 (396)
+..-+...|..+++.++..+|...|+.
T Consensus 246 iAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 246 IAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333333344444444555555554444
No 386
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.57 E-value=8.5 Score=28.54 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=25.5
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041816 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298 (396)
Q Consensus 265 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 298 (396)
.-|.-.+|..+|+.|.+.|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34667789999999999998887 588887654
No 387
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=63.56 E-value=76 Score=25.46 Aligned_cols=55 Identities=18% Similarity=0.336 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--------------CCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 293 SLIHGFCYANDWNEANCLLIEMMDQGV--------------QPDVVTFNVIMDELCKNGKMDEASRLLE 347 (396)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~~~~--------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 347 (396)
+++..|-+..+|.++.++++.|.+..+ .+.-...|.....+.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 455556666777777777777665322 1222334555666666677776666665
No 388
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=63.41 E-value=17 Score=31.34 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 139 (396)
.||..|....+.||+++|+.++++.++.|+.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3455555566666666666666666665544
No 389
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.36 E-value=2.8e+02 Score=31.82 Aligned_cols=63 Identities=11% Similarity=-0.089 Sum_probs=49.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
..+|-...+...+.|.++.|...+-...+.+ -+..+--....+...|+...|+.++++..+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4578888888888999999998887777654 33555566778889999999999999988643
No 390
>PRK11619 lytic murein transglycosylase; Provisional
Probab=62.59 E-value=1.6e+02 Score=28.99 Aligned_cols=260 Identities=9% Similarity=-0.004 Sum_probs=123.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041816 112 LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191 (396)
Q Consensus 112 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (396)
..+..+.+.++++..++++.. .+.+...-.....+....|+.++|......+-..|. .....++.++..+.+.|
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcC
Confidence 344455666777766663321 133455555667777778887777776666655552 24566677777776555
Q ss_pred CHHH--HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---ccccCCHhhHHHHHHHH--h
Q 041816 192 RIME--AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG---VVCKPNTVTYTTIIDGL--C 264 (396)
Q Consensus 192 ~~~~--a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~--~ 264 (396)
.+.. ..+=++.+...| +...-..++..+. .+.....+.+..+........ ...+++...-..++-++ .
T Consensus 178 ~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 178 KQDPLAYLERIRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASV 252 (644)
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHH
Confidence 4332 222222222222 1111122222110 000000001111110000000 00112221111111122 2
Q ss_pred ccCCHHHHHHHHHHHhhCC-CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 041816 265 KEGFVDKAKELFLQMKDKN-INPD--VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341 (396)
Q Consensus 265 ~~g~~~~a~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 341 (396)
...+.+.|..++....... ..+. ...+..+.......+...++...+....... .|......-+..-...++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 3456688888888764432 2111 1223344333333332456666665543322 244444555555567888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 342 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
+...+..|.... .-...-.-=+.+++...|+.++|..+|+++.
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888875532 2222333335566666889999988888864
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.54 E-value=42 Score=26.91 Aligned_cols=56 Identities=13% Similarity=-0.033 Sum_probs=34.4
Q ss_pred HHhccCCHHHHHHHHHHHhh-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 262 GLCKEGFVDKAKELFLQMKD-KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
......+.+......+.+.+ ....|+..+|..++.++...|+.++|.++..++...
T Consensus 117 ~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 117 LARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33345555544444444332 234567777777777777788888887777777653
No 392
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=62.04 E-value=19 Score=30.97 Aligned_cols=31 Identities=26% Similarity=0.200 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 041816 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321 (396)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 321 (396)
|+..|....+.||+++|+.+++++.+.|+.-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 3456666666666666666666666665443
No 393
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=62.01 E-value=8 Score=28.67 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 041816 191 SRIMEAAALFTKLKAFGCKPNVITYSTLING 221 (396)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 221 (396)
|.-.+|..+|.+|.+.|-+||. |+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 4555677777777777776664 6666543
No 394
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=61.88 E-value=94 Score=27.00 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=15.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 255 TYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
.-...+......|++..|++++.+..+
T Consensus 129 ~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 129 QTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334445555566666666666666543
No 395
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=61.67 E-value=92 Score=25.74 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=48.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHhH--HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP---DLYTY--NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 180 (396)
...-.|.|+--|.....+.+|.+.|.. ..|+.| |..++ ..-|+...+.|+++.|++....+-..-+..|...+
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 344455555555555556666666544 334444 33333 24566667888888888877776544333343222
Q ss_pred HHHHH----HHHhcCCHHHHHHHHH
Q 041816 181 TSLIK----GLCAESRIMEAAALFT 201 (396)
Q Consensus 181 ~~l~~----~~~~~g~~~~a~~~~~ 201 (396)
-.|.. -..+.|..++|+++.+
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q 127 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQ 127 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 22221 1234455555555543
No 396
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.47 E-value=31 Score=20.31 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=13.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHH
Q 041816 190 ESRIMEAAALFTKLKAFGCKPNVITYSTL 218 (396)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 218 (396)
.|-.+++..++++|.+.|+..+...+..+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 34444444444444444444444444433
No 397
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=60.92 E-value=23 Score=26.11 Aligned_cols=43 Identities=26% Similarity=0.239 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHHHHHH
Q 041816 124 DTVLSLFKRLNSTGLFPDL-YTYNILINCFCKMGRVSHGFVVLG 166 (396)
Q Consensus 124 ~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~ 166 (396)
++..++|..|...|+-... ..|......+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4467889999888765443 456677777888899999998886
No 398
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=60.82 E-value=31 Score=23.83 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=10.2
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 041816 116 CLAKTKHYDTVLSLFKRLN 134 (396)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~ 134 (396)
.....|++++|.+.+++..
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3444555666655555543
No 399
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.94 E-value=52 Score=32.98 Aligned_cols=128 Identities=13% Similarity=0.043 Sum_probs=64.6
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHH
Q 041816 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 233 (396)
+.|+++.|++.-..+- +..+|..|.....+.|+.+-|+..|++.+. |..|--.|.-.|+.++-.+
T Consensus 655 e~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred hcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 4455555544433221 455666666666666666666666665543 2223333445566666555
Q ss_pred HHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (396)
+.+..+.+. |..+ ......-.|+.++-.++++..-.. +..|-. -..+|.-++|.++.++
T Consensus 720 m~~iae~r~---------D~~~---~~qnalYl~dv~ervkIl~n~g~~-----~laylt----a~~~G~~~~ae~l~ee 778 (1202)
T KOG0292|consen 720 MMKIAEIRN---------DATG---QFQNALYLGDVKERVKILENGGQL-----PLAYLT----AAAHGLEDQAEKLGEE 778 (1202)
T ss_pred HHHHHHhhh---------hhHH---HHHHHHHhccHHHHHHHHHhcCcc-----cHHHHH----HhhcCcHHHHHHHHHh
Confidence 555544332 2111 111112246666666665543221 112211 2346777888888888
Q ss_pred HHHC
Q 041816 314 MMDQ 317 (396)
Q Consensus 314 ~~~~ 317 (396)
..+.
T Consensus 779 ~~~~ 782 (1202)
T KOG0292|consen 779 LEKQ 782 (1202)
T ss_pred hccc
Confidence 7763
No 400
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.06 E-value=1.4e+02 Score=27.12 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=39.8
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHH--hHHHHHHHHH--hcCChhhHHHHHHHHHhc
Q 041816 116 CLAKTKHYDTVLSLFKRLNSTGLFPDLY--TYNILINCFC--KMGRVSHGFVVLGRILRS 171 (396)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~li~~~~--~~g~~~~a~~~~~~~~~~ 171 (396)
.+...++|..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455789999999999999886 555444 4455555554 356778899988887764
No 401
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.04 E-value=63 Score=23.06 Aligned_cols=78 Identities=22% Similarity=0.169 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (396)
.++|..+.+++...+.. ...+--.-+..+...|+|++|+. .- .....||...|-.|. -.+.|--+++...+.
T Consensus 22 H~EA~tIa~wL~~~~~~--~E~v~lIr~~sLmNrG~Yq~ALl---~~-~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 22 HQEANTIADWLEQEGEM--EEVVALIRLSSLMNRGDYQEALL---LP-QCHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp HHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHTT-HHHHHH---HH-TTS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHhhHHHHHHHH---hc-ccCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 55666666666554432 11122222334555666666611 11 112235555554443 235565566665555
Q ss_pred HHHhcC
Q 041816 167 RILRSC 172 (396)
Q Consensus 167 ~~~~~~ 172 (396)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 555444
No 402
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.03 E-value=1.4e+02 Score=27.11 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=40.3
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCCChh--hHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 041816 261 DGLCKEGFVDKAKELFLQMKDKNINPDVV--TYNSLIHGFC--YANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~--~~~~~~~a~~~~~~~~~~ 317 (396)
....+.+++..|.++|+.+... +.++.. .|..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455789999999999999886 554444 4455555553 456788999999887764
No 403
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.93 E-value=1.2e+02 Score=26.17 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 041816 292 NSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
.-++..+.+.|.+.+|+.+...+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 44667777778888777765443
No 404
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=58.09 E-value=1.6e+02 Score=27.28 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041816 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389 (396)
Q Consensus 327 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 389 (396)
..|+.-|...|++.+|.+.++++--- +--...++.+++.+.-+.|+-...+.++++.-+.|+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 56777788888888888887766321 112456788888888888888888888887766664
No 405
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=57.46 E-value=65 Score=23.82 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPD-AVAFTSLIKGLCAESRIMEAAALFTK 202 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 202 (396)
++..++|..|.+.|+-.. +..|......+-..|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 557889999998876544 44566777788889999999999863
No 406
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.02 E-value=62 Score=22.30 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=29.0
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 299 CYANDWNEANCLLIEMMDQ----GVQPD----VVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
.+.|++.+|.+.+.+..+. +.... ....-.+.......|+.++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4667777776655555432 21111 11222344455566777777777777765
No 407
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=56.65 E-value=25 Score=17.75 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041816 337 GKMDEASRLLELMILRGVNPNTSTFSTLM 365 (396)
Q Consensus 337 g~~~~A~~~~~~m~~~g~~p~~~~~~~li 365 (396)
|+.+.|..+|+.+... .+-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~-~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEK-FPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHH-CCCChHHHHHHH
Confidence 4566777777777664 233555555444
No 408
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=56.47 E-value=1.3e+02 Score=25.95 Aligned_cols=102 Identities=14% Similarity=0.099 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCccHHHHHH-HHHHHHhcCChHHHHHHHHHHHhcCCCCccccc
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKA----FGCKPNVITYST-LINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~g~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (396)
-..++..+...|+..++.+.+.+..++..+ .|.+.|+....+ |.-.|....-.++.++..+.+.+.|+.|.. .
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeR--r 191 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWER--R 191 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHh--h
Confidence 345666677777777777777666555433 344444432221 222233333455666666666666643321 1
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
.-..+|-.+-.+ ...++.+|-.++-+...
T Consensus 192 NRyK~Y~Gi~~m--~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 192 NRYKVYKGIFKM--MRRNFKEAAILLSDILP 220 (412)
T ss_pred hhHHHHHHHHHH--HHHhhHHHHHHHHHHhc
Confidence 112233322221 23456666666655543
No 409
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.56 E-value=64 Score=22.02 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=19.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHH
Q 041816 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a 231 (396)
..|+.+.|.++++.+. .| |+ .|..++.++...|..+.|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhh
Confidence 3355556666665555 32 22 355555555555554443
No 410
>PRK10941 hypothetical protein; Provisional
Probab=55.56 E-value=1.3e+02 Score=25.73 Aligned_cols=63 Identities=14% Similarity=0.012 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
..+.+-.+|.+.++++.|+++.+.+.... +.+..-+.--.-.|.+.|.+..|..=++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 45667778899999999999999999875 4456667777778999999999999888887764
No 411
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.33 E-value=1.3e+02 Score=25.33 Aligned_cols=122 Identities=11% Similarity=-0.030 Sum_probs=66.6
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHhcCChH
Q 041816 152 FCKMGRVSHGFVVLGRILRSCFTPDA-VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI-TYSTLINGLCRTGHTI 229 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~ 229 (396)
|.....+..|+..|.+.+... |+. .-|..-+.++.+..+++.+..=-.+..+. .||.+ ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 444456777777666666543 444 44556666677777777776666555554 34433 3334445555666777
Q ss_pred HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041816 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279 (396)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 279 (396)
+|+..+.+......... +++....+..|..+--+.-...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~--~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQP--FTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 77777777643322111 2333445555555544444445555554443
No 412
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=55.14 E-value=1e+02 Score=27.33 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhcCCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 041816 88 NEAFCIFDYMLNMRPS-PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151 (396)
Q Consensus 88 ~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 151 (396)
++.+.+++.+++.-|. ..-+..|-.++......|.++.++.+|+++...|..|-...-..++..
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3555555555443221 011234555555555555555666666666555555544444444443
No 413
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.12 E-value=2.3e+02 Score=28.27 Aligned_cols=190 Identities=15% Similarity=0.188 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCH-hhHHHHHHHHhccCCH
Q 041816 194 MEAAALFTKLKAFGCKPN---VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT-VTYTTIIDGLCKEGFV 269 (396)
Q Consensus 194 ~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~ 269 (396)
++-..++++|+..-..|+ ..+...++-.|....+++...++.+.++.....+...-.+++ ..|...++--.+-|+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 344556777776533343 445566777788888999999999998874311111111111 2344444445567888
Q ss_pred HHHHHHHHHHhhC--CCCCChhhHHH-------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHhcC
Q 041816 270 DKAKELFLQMKDK--NINPDVVTYNS-------LIHGFCYANDWNEANCLLIEMMDQGVQPDVVT---FNVIMDELCKNG 337 (396)
Q Consensus 270 ~~a~~~~~~m~~~--~~~p~~~~~~~-------li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g 337 (396)
++|+.+.-.+.+. .+.||..+... +-+.|...+..+.|...|++..+ +.|+..+ +..|+.+-.+.
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~- 336 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH- 336 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh-
Confidence 9998887777653 35566544321 12334455667888888988876 4566543 33333332221
Q ss_pred CHHHHHHH------HHHHH-hCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhC
Q 041816 338 KMDEASRL------LELMI-LRGVNPNTSTFSTL---MDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 338 ~~~~A~~~------~~~m~-~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
++...++ +..+. ++|.-.....|.-+ +.+-.-.+++.+|.+.-+.|-+.
T Consensus 337 -Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 337 -FENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred -ccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 1111111 11111 22322222333222 22334567888888888887764
No 414
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=55.05 E-value=1.9e+02 Score=27.24 Aligned_cols=100 Identities=8% Similarity=0.103 Sum_probs=73.6
Q ss_pred CCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 041816 285 NPDVVTY-NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK--NGKMDEASRLLELMILRGVNPNTSTF 361 (396)
Q Consensus 285 ~p~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~ 361 (396)
.|+..++ +.++.-+-+.|-..+|..++..+... .+|+...|..++..=.. .-++..+..+|+.|... +..|+..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHH
Confidence 3455554 56777778889999999999998875 35677778777764321 22378889999988865 23688888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 362 STLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 362 ~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
-..+.-=...|..+.+-.++.+..+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 8888777789999988888776554
No 415
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=54.43 E-value=70 Score=22.81 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=15.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHh
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMK 280 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~ 280 (396)
..++.-|...++.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 445566677778888877777753
No 416
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.15 E-value=10 Score=33.17 Aligned_cols=86 Identities=9% Similarity=-0.030 Sum_probs=51.4
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCChHHHH
Q 041816 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN-VITYSTLINGLCRTGHTIVAL 232 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~ 232 (396)
..|.++.|++.+...++.. ++....|..-...+.+.+++..|++=++...+.+ || ..-|-.--.+-...|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 4566777777777766654 3355556666666666777777776666666542 23 222333333444466777777
Q ss_pred HHHHHHHhcC
Q 041816 233 NLFEEMANGN 242 (396)
Q Consensus 233 ~~~~~~~~~~ 242 (396)
..+....+.+
T Consensus 203 ~dl~~a~kld 212 (377)
T KOG1308|consen 203 HDLALACKLD 212 (377)
T ss_pred HHHHHHHhcc
Confidence 7776666654
No 417
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=54.03 E-value=1.2e+02 Score=29.48 Aligned_cols=91 Identities=12% Similarity=0.136 Sum_probs=60.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhcCCCccHHHHHHH
Q 041816 147 ILINCFCKMGRVSHGFVVLGRILRS--CFTPDAVAFTSLIKGLCAESRIM------EAAALFTKLKAFGCKPNVITYSTL 218 (396)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~g~~~~~~~~~~l 218 (396)
+|+.+|...|++..+.++++.+... |-+.-...+|..|+...+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999998764 22333567888888888888764 3334444433 34578888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 041816 219 INGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~ 240 (396)
+++-..--.-...+-++.+...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765553333344444444443
No 418
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=53.71 E-value=2e+02 Score=27.11 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=51.7
Q ss_pred CCCHhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHh-CCCCC
Q 041816 320 QPDVVTF-NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC--LTGRVNHAKELFVSMES-MGCKH 391 (396)
Q Consensus 320 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~-~g~~p 391 (396)
.|+..++ +.+++.+.+.|-..+|...+..+... .+|+...|..+|..=. ..-+...+.++|+.|.. .|-.|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 4555544 56777888889999999999999886 5678888888886432 22237888889988874 66433
No 419
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=53.49 E-value=70 Score=21.84 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHH
Q 041816 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274 (396)
Q Consensus 195 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 274 (396)
.+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .+ ...|..++.++...|.-+-|.+
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----------~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----------EGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----------CcHHHHHHHHHHHcCchhhhhc
Confidence 355678888887753 33334444333346789999999999998 55 4578888998888887666543
No 420
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.03 E-value=96 Score=31.27 Aligned_cols=176 Identities=20% Similarity=0.195 Sum_probs=92.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199 (396)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 199 (396)
++++++.+.+.+...--| .++|.-+.+.|-.+-|+...++-.. -...+..+|+++.|++.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~t------------RF~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERT------------RFELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcch------------heeeehhcCCHHHHHHH
Confidence 456777766655433222 2344455566666666655443211 12334456777777765
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041816 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279 (396)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 279 (396)
-.++- +..+|..|.......|+.+-|+..|+.... |..|--.|.-.|+.++-.++.+..
T Consensus 666 akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------------fekLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 666 AKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------------FEKLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred HHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------------hhheeEEEEEeCCHHHHHHHHHHH
Confidence 54432 556777888888888888777777776543 233334455667777666665555
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 280 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
..++ |..+ ....-.-.|+.++-.++++.. |..| ..|-. -..+|.-++|.++.++...
T Consensus 725 e~r~---D~~~---~~qnalYl~dv~ervkIl~n~---g~~~--laylt----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 725 EIRN---DATG---QFQNALYLGDVKERVKILENG---GQLP--LAYLT----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred Hhhh---hhHH---HHHHHHHhccHHHHHHHHHhc---Cccc--HHHHH----HhhcCcHHHHHHHHHhhcc
Confidence 4331 2211 111112245666555555432 2122 11211 1334555666666666554
No 421
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.32 E-value=77 Score=26.72 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=14.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHH
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQM 279 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m 279 (396)
..+...|.+.|++++|.++|+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 34555566666666666666665
No 422
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.02 E-value=86 Score=22.44 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 325 TFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 325 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
-|..|+..|...|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466777777777777777777777765
No 423
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.89 E-value=45 Score=30.77 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=41.6
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcccccCCHh-hHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 041816 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTV-TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301 (396)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 301 (396)
.+.++++.|..++.++.+.. ||.. -|..-..++.+.+++..|+.=+....+.... -...|..=..++...
T Consensus 15 l~~~~fd~avdlysKaI~ld--------pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELD--------PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMAL 85 (476)
T ss_pred cccchHHHHHHHHHHHHhcC--------CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhH
Confidence 34445555555555555532 3222 2222234555555555555544444443211 112222222333333
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 041816 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332 (396)
Q Consensus 302 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 332 (396)
+.+.+|...|+.... +.|+..-+...+.-
T Consensus 86 ~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKK--LAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHHHhhh--cCcCcHHHHHHHHH
Confidence 444444444444433 34444444444433
No 424
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=51.54 E-value=2.6e+02 Score=27.87 Aligned_cols=86 Identities=12% Similarity=0.040 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHh-hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---C----------CCHhhHHHHHHHH
Q 041816 268 FVDKAKELFLQMK-DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV---Q----------PDVVTFNVIMDEL 333 (396)
Q Consensus 268 ~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~----------p~~~~~~~l~~~~ 333 (396)
..++..+.+.... ..|+..+......++... .|++..++.+++++...|- . .+......++.++
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Confidence 3455555555543 457777777777777654 6999999999988776431 1 1222233444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC
Q 041816 334 CKNGKMDEASRLLELMILRGVNP 356 (396)
Q Consensus 334 ~~~g~~~~A~~~~~~m~~~g~~p 356 (396)
.+ ++...++.+++++...|+.+
T Consensus 257 ~~-~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 257 IN-QDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCCH
Confidence 43 77778888888888776644
No 425
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=51.53 E-value=2.3e+02 Score=30.08 Aligned_cols=159 Identities=16% Similarity=0.037 Sum_probs=96.2
Q ss_pred HHhcCChhhHHH------HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhcCCCccHHHHHHH
Q 041816 152 FCKMGRVSHGFV------VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-------KAFGCKPNVITYSTL 218 (396)
Q Consensus 152 ~~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~g~~~~~~~~~~l 218 (396)
....|.+.++.+ ++......-.+.....|..+...+.+.|+.++|+..-.+. ....-+.+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344555665555 5553333223445677888888889999999888765442 222223345556666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCC-CCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC-----CC--CCChhh
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNG-KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK-----NI--NPDVVT 290 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~--~p~~~~ 290 (396)
.-.....+....|...+........ .++...||...+++.+-..+...++++.|.+.++..... |. -.+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 6666666677777777766654332 223324555566666666666678899999998887642 11 124556
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 041816 291 YNSLIHGFCYANDWNEANCL 310 (396)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~ 310 (396)
|..+.+.+...+++..|...
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 66666666666666555443
No 426
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=51.51 E-value=72 Score=30.86 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 041816 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330 (396)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 330 (396)
+.+++.+|.+.+-.+.+....|...-...|.
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~ 537 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLC 537 (566)
T ss_dssp -------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 3477777777777777766666554444333
No 427
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.41 E-value=2.6e+02 Score=27.90 Aligned_cols=146 Identities=10% Similarity=0.054 Sum_probs=86.0
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 164 (396)
+.+++|+++.+.....-+.......+...+..+.-.|++++|-...-.|.. -+..-|...+..+...++......+
T Consensus 370 k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l~~Ia~~ 445 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQLTDIAPY 445 (846)
T ss_pred hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccccchhhcc
Confidence 347777777666544322212445678888888888999999988888875 3667777777777777765543222
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------------------HHhcCCCccHHHHHHHHHHHHhcC
Q 041816 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK------------------LKAFGCKPNVITYSTLINGLCRTG 226 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------------------~~~~g~~~~~~~~~~ll~~~~~~g 226 (396)
+.......+...|..++..+.. .+...-.++..+ ..+. ..+...-..|+..|...+
T Consensus 446 ---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl~d~ 519 (846)
T KOG2066|consen 446 ---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYLYDN 519 (846)
T ss_pred ---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHHHcc
Confidence 2222222455667666666655 222222221111 0110 012223345778888889
Q ss_pred ChHHHHHHHHHHHh
Q 041816 227 HTIVALNLFEEMAN 240 (396)
Q Consensus 227 ~~~~a~~~~~~~~~ 240 (396)
++..|+.++-....
T Consensus 520 ~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 520 KYEKALPIYLKLQD 533 (846)
T ss_pred ChHHHHHHHHhccC
Confidence 99998888876654
No 428
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.13 E-value=59 Score=24.41 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS 135 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 135 (396)
..+.+.+++.+.+.............|.-++.+.++++.++++.+.+.+
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 4445555555554222113333334444455555666666666555554
No 429
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.07 E-value=40 Score=31.03 Aligned_cols=104 Identities=11% Similarity=0.064 Sum_probs=70.3
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 159 (396)
..+..+.++.|+.++.++++..+. .+..|..-..++.+.+++..|+.=...+.+.. +--...|..-..++.+.+.+.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpn--ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPN--CAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCc--ceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHH
Confidence 345667899999999999887653 56666666678888999999988888877754 112233444445566667777
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLC 188 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (396)
+|+..|+..... .|+..-....+.-|-
T Consensus 90 ~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 90 KALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 777777776654 566665555555443
No 430
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.98 E-value=1.3e+02 Score=24.09 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=16.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 041816 183 LIKGLCAESRIMEAAALFTKLKA 205 (396)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~ 205 (396)
.+..|.+.|.+++|.+++++..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34456777777777777777765
No 431
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.67 E-value=1.6e+02 Score=25.17 Aligned_cols=205 Identities=12% Similarity=0.102 Sum_probs=119.9
Q ss_pred CCCCCHHhHHHHHHH-HHhcCChhhHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC
Q 041816 137 GLFPDLYTYNILINC-FCKMGRVSHGFVVLGRILRSCFTPDAV---AFTSLIKGLCAESRIMEAAALFTKLKAF---GCK 209 (396)
Q Consensus 137 ~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~---g~~ 209 (396)
+-+||+..=|..-.+ -.+..++++|+.-|.+.++....-..+ +...++..+.+.|++++....|.++... .+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 445665543322211 113347888999898888754333333 4456788889999999999988887643 111
Q ss_pred --ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC-----
Q 041816 210 --PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK----- 282 (396)
Q Consensus 210 --~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 282 (396)
-+....|+++.......+.+....+++.-...-..... -..=..|-+-|...|...+.+....++++++...
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKN-eRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKN-ERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhc-ceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 23455677777776666666655555543221100000 0011123356777888889999999999888642
Q ss_pred CCC------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHH-----HhcCCHHHHH
Q 041816 283 NIN------PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-GVQPDVVTFNVIMDEL-----CKNGKMDEAS 343 (396)
Q Consensus 283 ~~~------p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~A~ 343 (396)
|-. -=...|..-|+.|....+-.+...++++...- .--|.+.... +|+-| .+.|++++|-
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHH
Confidence 111 01346777788888888877778888876632 2234444333 23322 3456666654
No 432
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.32 E-value=1.2e+02 Score=26.52 Aligned_cols=58 Identities=14% Similarity=0.283 Sum_probs=45.7
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041816 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335 (396)
Q Consensus 273 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 335 (396)
.++++.+.+.++.|.-..+..+.-.+.+.=.+..++.+|+.+... ..-|..|+..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 567888888899999888888888888888889999999988763 3336677776664
No 433
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.24 E-value=2.8e+02 Score=27.78 Aligned_cols=168 Identities=11% Similarity=0.075 Sum_probs=80.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 041816 149 INCFCKMGRVSHGFVVLGRILRSCFTP---DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 225 (396)
++.+.+.+.+++|+++.+..... .+ -...+..+|..+.-.|++++|-...-.|... +...|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 44555566666666655543322 22 2344555666666666666666666666542 455555555555555
Q ss_pred CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 041816 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 305 (396)
++......++ .... ...+...|..++..+.. .+.. ..++...+. +...|..+-..-+...+
T Consensus 437 ~~l~~Ia~~l---Pt~~------~rL~p~vYemvLve~L~-~~~~---~F~e~i~~W----p~~Lys~l~iisa~~~q-- 497 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGP------PRLKPLVYEMVLVEFLA-SDVK---GFLELIKEW----PGHLYSVLTIISATEPQ-- 497 (846)
T ss_pred cccchhhccC---CCCC------cccCchHHHHHHHHHHH-HHHH---HHHHHHHhC----ChhhhhhhHHHhhcchH--
Confidence 5443322221 1110 11234556666665554 2211 122222211 22233332211111111
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
..+ ... +...-..|+..|...+++..|..++-.+.+
T Consensus 498 --------~~q-~Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 498 --------IKQ-NSE-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred --------HHh-hcc-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 111 111 222334488889999999999998877763
No 434
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.13 E-value=1.4e+02 Score=26.14 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----------cCChHHH
Q 041816 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR----------TGHTIVA 231 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----------~g~~~~a 231 (396)
.++++.+.+.++.|.-..+.-+.-.+...=.+.+++.+|+.+.. |..-|..++..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46788888888888888887777777788888888888888875 33335555555543 5788877
Q ss_pred HHHHHH
Q 041816 232 LNLFEE 237 (396)
Q Consensus 232 ~~~~~~ 237 (396)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 777765
No 435
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=48.39 E-value=2.3e+02 Score=26.37 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=52.9
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-----------cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK-----------TKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 151 (396)
+.-++++|.++.+.+- ....+...+....+ ...+++-+++++.+.+.| .+| ....-|++
T Consensus 26 ~~vd~~eav~y~k~~p-------~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDS 95 (480)
T TIGR01503 26 KDVDLQDAVDYHKSIP-------AHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG-GAD--FLPSTIDA 95 (480)
T ss_pred ccCCHHHHHHHHHhCC-------ccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc-CCC--ccceeeec
Confidence 3347888888877762 22223333332222 235788888998888876 234 44567889
Q ss_pred HHhcCChhhHHHHHHHHHhc
Q 041816 152 FCKMGRVSHGFVVLGRILRS 171 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~ 171 (396)
|.+.+++++|...+++-.+.
T Consensus 96 yTR~n~y~~A~~~l~~s~~~ 115 (480)
T TIGR01503 96 YTRQNRYDEAAVGIKESIKA 115 (480)
T ss_pred ccccccHHHHHHHHHhhhhc
Confidence 99999999999999988764
No 436
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=48.21 E-value=61 Score=19.64 Aligned_cols=30 Identities=20% Similarity=0.046 Sum_probs=16.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHh
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT 144 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 144 (396)
+.-++.+.|++++|.+..+.+.+. .|+..-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHH
Confidence 444566667777777777666653 455443
No 437
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=48.10 E-value=1.6e+02 Score=24.41 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=9.7
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 041816 330 MDELCKNGKMDEASRLLELM 349 (396)
Q Consensus 330 ~~~~~~~g~~~~A~~~~~~m 349 (396)
|......|++++|++....+
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 33444555555555554444
No 438
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.70 E-value=1.2e+02 Score=25.60 Aligned_cols=65 Identities=18% Similarity=0.106 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 279 (396)
..-.+..-|.+.|++++|.++|+.+......-+= ..+...+...+..++.+.|+.+....+-=++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW-~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGW-WSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3446777899999999999999988543210000 1233445556666677777777666654443
No 439
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=47.58 E-value=90 Score=21.41 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=31.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCC
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYTYNILINCFCKMGR 157 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 157 (396)
.|...--.+...+...|++++|++.+-.+.+..-.. +...-..++..+.-.|.
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 466677777777888888888888887776654222 33344555555555454
No 440
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=47.50 E-value=61 Score=23.26 Aligned_cols=47 Identities=19% Similarity=0.197 Sum_probs=29.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 159 (396)
++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444455555667777777777665566666666666776666544
No 441
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.46 E-value=56 Score=24.85 Aligned_cols=50 Identities=16% Similarity=0.069 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 159 (396)
-..++..+.+.++.-.|.++++.+.+.+...+..|....++.+.+.|-+.
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 34577777888788899999999999887767777777777887777543
No 442
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.71 E-value=2.7e+02 Score=26.60 Aligned_cols=47 Identities=6% Similarity=0.080 Sum_probs=27.7
Q ss_pred HHHHHHHHHHH-hhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 269 VDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 269 ~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
.++..+.+... .+.|+..+......++... .|++..+...++.+...
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~ 224 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLAL 224 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhc
Confidence 34444555443 3456666666666665543 57777777777776543
No 443
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.69 E-value=19 Score=31.53 Aligned_cols=92 Identities=16% Similarity=0.052 Sum_probs=57.7
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 041816 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303 (396)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 303 (396)
..|.++.|++.|...+... ++....|.--.+++.+.+++..|++=++...+.+.. ...-|-.--.+....|+
T Consensus 126 n~G~~~~ai~~~t~ai~ln-------p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-------PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGN 197 (377)
T ss_pred cCcchhhhhcccccccccC-------CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhc
Confidence 4566777777777776654 555566666667777777777777777666654332 22334333444455677
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q 041816 304 WNEANCLLIEMMDQGVQPDV 323 (396)
Q Consensus 304 ~~~a~~~~~~~~~~~~~p~~ 323 (396)
|++|-..+....+.+..+..
T Consensus 198 ~e~aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYDEAN 217 (377)
T ss_pred hHHHHHHHHHHHhccccHHH
Confidence 77777777777776554443
No 444
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=46.65 E-value=2.7e+02 Score=26.72 Aligned_cols=290 Identities=10% Similarity=0.024 Sum_probs=153.3
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCChhhHHHHHH
Q 041816 88 NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC-KMGRVSHGFVVLG 166 (396)
Q Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~ 166 (396)
+.+..+++.++..-|. --..|......=.+.|..+.+.++|++... +++.....|...+..+. ..|+.+.....|+
T Consensus 62 ~~~r~~y~~fL~kyPl--~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPL--CYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHhhCcc--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 5566677777654432 334566666666778899999999999876 45666667766655443 4566777777777
Q ss_pred HHHhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH---h------cCChHHHHHHH
Q 041816 167 RILRS-CFT-PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC---R------TGHTIVALNLF 235 (396)
Q Consensus 167 ~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~---~------~g~~~~a~~~~ 235 (396)
..+.. |.. .+...|...|..-...+++.....+|+++.+.. ..-++..-.-|. . ....+++.++-
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~ 214 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLR 214 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHh
Confidence 77653 321 245678888888888899999999999998751 222222222221 1 12233333333
Q ss_pred HHHHhc-CCCCc------------ccccCC---HhhHHHHH-------HHHhccCCHHHHHHHHHHHhhC---CCC----
Q 041816 236 EEMANG-NGKFG------------VVCKPN---TVTYTTII-------DGLCKEGFVDKAKELFLQMKDK---NIN---- 285 (396)
Q Consensus 236 ~~~~~~-~~~~~------------~~~~~~---~~~~~~li-------~~~~~~g~~~~a~~~~~~m~~~---~~~---- 285 (396)
...... ...+. ....|. ....+.+- .++.......+....|+.-.+. .++
T Consensus 215 ~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~ 294 (577)
T KOG1258|consen 215 SDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQ 294 (577)
T ss_pred hhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccH
Confidence 322211 00000 000010 01111111 1122222222333333332221 111
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHH
Q 041816 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN--PNTSTFST 363 (396)
Q Consensus 286 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ 363 (396)
++..+|...+.--...|+++.+.-+|+...-- +.--...|-..+.-....|+.+-|..++....+--++ |....+.+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 24556777777778888888888887776531 1111233444444444457777777666665554222 22222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 364 LMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 364 li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
. ..-..|+.+.|..+++.+.+.
T Consensus 374 ~--f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 374 R--FEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred H--HHHhhccHHHHHHHHHHHHhh
Confidence 2 223356777777777777654
No 445
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=46.60 E-value=2.4e+02 Score=26.03 Aligned_cols=197 Identities=16% Similarity=0.230 Sum_probs=115.6
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChhh-----HHHHHH
Q 041816 94 FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST--GLFPDLYTYNILINCFCKMGRVSH-----GFVVLG 166 (396)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~-----a~~~~~ 166 (396)
|..++.-...+.....|+.+.+.=-+..-.+...++.+.|... .-.|-..-...+|..||+..+.+- -+.++.
T Consensus 42 W~~~L~V~~K~d~l~~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~ 121 (669)
T KOG3636|consen 42 WMRLLGVSMKPNPLDDWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLE 121 (669)
T ss_pred HHHHhcccCCCCchhhHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHH
Confidence 5555544445455667877766544444455667777776432 112333345677888888776542 234555
Q ss_pred HHHhcCCCCCHHHHHHHH---HHHH-----hcCCHHHHHHHHH---------HHHhcCCCccHHHHHHHHHHHHhcCChH
Q 041816 167 RILRSCFTPDAVAFTSLI---KGLC-----AESRIMEAAALFT---------KLKAFGCKPNVITYSTLINGLCRTGHTI 229 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~---~~~~-----~~g~~~~a~~~~~---------~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 229 (396)
.+....++ -...||... .-|. ..|++=...+++- .+....+.||..+.|.+...++..-..+
T Consensus 122 pl~~L~lp-rsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Ste 200 (669)
T KOG3636|consen 122 PLLLLNLP-RSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTE 200 (669)
T ss_pred HHHHhcCC-cchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHH
Confidence 55544433 344444332 2232 2233322222221 2334467899999999999999888899
Q ss_pred HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHH--------HhccCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHH
Q 041816 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG--------LCKEGFVDKAKELFLQMKDK-NINPDVVTYNSLIHGFC 299 (396)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~ 299 (396)
-...+|+-..+.. .|-.+-+.++|-. -.+....++++++++.|... .+. |..-+..|...|+
T Consensus 201 v~~a~WdlY~qqa-------DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~e-DvpDffsLAqyY~ 271 (669)
T KOG3636|consen 201 VCHALWDLYIQQA-------DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVE-DVPDFFSLAQYYS 271 (669)
T ss_pred HHHHHHHHHHhcC-------CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccc-cchhHHHHHHHHh
Confidence 9999999988876 3433334333321 13456678999999998653 333 6666666766665
No 446
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=46.54 E-value=52 Score=23.88 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=30.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 041816 112 LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (396)
Q Consensus 112 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 159 (396)
.++..+...+.+-.|.++++.+.+.+...+..|...-+..+.+.|-+.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 455555566666777788888877776666666666666666666443
No 447
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.85 E-value=2.2e+02 Score=27.88 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=59.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHhhHHHH
Q 041816 258 TIIDGLCKEGFVDKAKELFLQMKDK--NINPDVVTYNSLIHGFCYANDWN------EANCLLIEMMDQGVQPDVVTFNVI 329 (396)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~------~a~~~~~~~~~~~~~p~~~~~~~l 329 (396)
+|.++|...|++..+.++++.+... |-+.-...||..|+...+.|.++ .|.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8899999999999999999998753 33333557888889889998764 3333333333 45577888877
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 041816 330 MDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 330 ~~~~~~~g~~~~A~~~~~~m~ 350 (396)
+.+-...-.-....-++.+++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 766554333333333444443
No 448
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.82 E-value=1.1e+02 Score=21.89 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
-|..++..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 378899999999999999999998877
No 449
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.30 E-value=3.1e+02 Score=26.96 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=52.9
Q ss_pred HHHHHHHHHHH-hhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCHhhHHHHHHHHH
Q 041816 269 VDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ-------------PDVVTFNVIMDELC 334 (396)
Q Consensus 269 ~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------p~~~~~~~l~~~~~ 334 (396)
.++..+.+... .+.|+..+......++.. ..|++..++.+++++...+-. .+......+++++.
T Consensus 185 ~eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~ 262 (618)
T PRK14951 185 PETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA 262 (618)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34444555443 456777777777777764 468999999998877644311 12222334444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC
Q 041816 335 KNGKMDEASRLLELMILRGVNP 356 (396)
Q Consensus 335 ~~g~~~~A~~~~~~m~~~g~~p 356 (396)
. |+...++.+++++.+.|..+
T Consensus 263 ~-~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 263 Q-GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred c-CCHHHHHHHHHHHHHcCCCH
Confidence 3 77888888888888776654
No 450
>PRK09857 putative transposase; Provisional
Probab=45.25 E-value=2.1e+02 Score=24.94 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041816 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357 (396)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 357 (396)
+..++......++.++..++++.+.+. .+........+..-+...|..+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344555445666666666777666654 233344455666777777777788888888888887655
No 451
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=44.52 E-value=46 Score=21.23 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILRSC 172 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~~~ 172 (396)
++.++..+++-.-.++++..+++..+.|
T Consensus 11 ~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 11 SNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444444444444444444443
No 452
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=44.32 E-value=5.6e+02 Score=29.65 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 288 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
..+|-...+...++|+++.|...+-+..+.+ .| ..+--.+......|+...|+.++++-.+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 5678888888888999999999888877765 23 45556677788999999999999988864
No 453
>PRK12356 glutaminase; Reviewed
Probab=44.08 E-value=2.1e+02 Score=25.26 Aligned_cols=108 Identities=13% Similarity=0.142 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C-HhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP-D-VVTFNVIMDELCKNGKMDEASRLLE 347 (396)
Q Consensus 270 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~ 347 (396)
+...++++++-...+..|..+|.+ -...++-..|+..+ |...|.-+ | ..+.....+.|+-....++.-.+..
T Consensus 140 ~~il~~~~~~ag~~l~~de~v~~S----E~~t~~RNrAlA~~--lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a 213 (319)
T PRK12356 140 QRILDGQQRFAGRELALSDEVYQS----EQTTNFHNRAIAWL--LYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGA 213 (319)
T ss_pred HHHHHHHHHHhCCCCccCHHHHHH----HHhhhHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHH
Confidence 333444444443334444444333 22334444444333 33443322 2 2233334444444444444444444
Q ss_pred HHHhCCCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 348 LMILRGVNP-------NTSTFSTLMDGFCLTGRVNHAKELFVS 383 (396)
Q Consensus 348 ~m~~~g~~p-------~~~~~~~li~~~~~~g~~~~A~~~~~~ 383 (396)
-+...|+.| +..+-..+......+|.+|.+-++.-+
T Consensus 214 ~LAn~G~~P~tg~~vl~~~~~r~v~s~M~TCGmYd~SG~fa~~ 256 (319)
T PRK12356 214 TLAAGGVNPLTGKRVVDADNVPYILAEMTMEGLYERSGDWAYT 256 (319)
T ss_pred HHHcCCcCCCCCCeecCHHHHHHHHHHHHHcCCccchhhHHHH
Confidence 555555554 344444555555666777777666544
No 454
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=43.83 E-value=81 Score=19.84 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=6.1
Q ss_pred cCChhhHHHHHHHHH
Q 041816 155 MGRVSHGFVVLGRIL 169 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~ 169 (396)
.|++=+|-++++.+-
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 344444444444443
No 455
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=43.47 E-value=3.2e+02 Score=29.11 Aligned_cols=130 Identities=14% Similarity=0.056 Sum_probs=79.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHH-------HhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-----C
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRL-------NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS-----C 172 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~ 172 (396)
.....|..+...+-+.++.++|+..-... ....-.-+...|..+...+...++...|...+.+.... |
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence 45667888888889999999998865543 11122223445666666666666777777777766542 2
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C---CccHHHHHHHHHHHHhcCChHHHHHH
Q 041816 173 --FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG----C---KPNVITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 173 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g----~---~~~~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
.+|...+++.+-..+...++.+.|.++.+...+.. . -.+..++..+.+.+...+++..|+..
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 23344455555555555688889998888876541 1 12345566666666666665554443
No 456
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=41.96 E-value=1.5e+02 Score=22.37 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041816 158 VSHGFVVLGRILR-SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 158 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (396)
..+.+.+++++.+ ..........-.|.-++.+.+++++++++.+.+.+.
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4455566666664 222222333334445566666666666666666554
No 457
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.67 E-value=3.1e+02 Score=25.93 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=21.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041816 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358 (396)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 358 (396)
+...+..++++....+....|+.++++|.+.|..|..
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 3334445555555544456677777777777665543
No 458
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.64 E-value=2.6e+02 Score=25.10 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=36.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhCC
Q 041816 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD----GFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 333 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~g 388 (396)
+.+-++..-|..+...+.++.+..-..+|.+|-- -....+..++|.+..-+|.+.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 4456666777777777766655555566655532 2335678888888888887765
No 459
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=41.60 E-value=2.5e+02 Score=24.84 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=34.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVV---TFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
|..+..+.|+..+|.+.++.+.+. .|-.. .-..|+.++....-+.+...++.+.-+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344445678888888888777654 22222 2345677777766666666666555443
No 460
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=41.34 E-value=56 Score=20.83 Aligned_cols=46 Identities=13% Similarity=0.228 Sum_probs=19.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041816 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368 (396)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 368 (396)
+...++.++..+++-.-+++++..+.++...|. .+..+|---++.+
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 333444444444444444455555555544442 2333333333333
No 461
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=41.30 E-value=1.7e+02 Score=22.94 Aligned_cols=48 Identities=10% Similarity=0.012 Sum_probs=29.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 041816 112 LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (396)
Q Consensus 112 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 159 (396)
.++..+...++.-.|.++++.+.+.+...+..|....+..+.+.|-+.
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344444445556667777777777665566666666666666666544
No 462
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.28 E-value=2.5e+02 Score=24.63 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=40.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcC
Q 041816 298 FCYANDWNEANCLLIEMMDQGVQPDVV----TFNVIMDELCKNGKMDEASRLL-ELMILRGVNPNTSTFSTLMDGFCLTG 372 (396)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~~~~~li~~~~~~g 372 (396)
..+...+++.....++-.+..--|+.. .|..++++ +.+.+-.++. +..++ ...+|..|+.+++..|
T Consensus 265 ~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsa----veWnKkeelva~qalr-----hlK~yaPLL~af~s~g 335 (412)
T KOG2297|consen 265 VSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSA----VEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQG 335 (412)
T ss_pred hccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHH----HhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCC
Confidence 334455666666665544444456654 45555554 3333333222 22222 3567889999999999
Q ss_pred CHHHHH
Q 041816 373 RVNHAK 378 (396)
Q Consensus 373 ~~~~A~ 378 (396)
+.+-++
T Consensus 336 ~sEL~L 341 (412)
T KOG2297|consen 336 QSELEL 341 (412)
T ss_pred hHHHHH
Confidence 877553
No 463
>PLN03025 replication factor C subunit; Provisional
Probab=40.77 E-value=2.5e+02 Score=24.67 Aligned_cols=88 Identities=17% Similarity=0.176 Sum_probs=57.2
Q ss_pred HHHHHHHHHHH-hhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-----------CCCCHhhHHHHHHHHHh
Q 041816 269 VDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-G-----------VQPDVVTFNVIMDELCK 335 (396)
Q Consensus 269 ~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-----------~~p~~~~~~~l~~~~~~ 335 (396)
.++....+... .+.|+..+......++..+ .|+...+...++..... + ..+.......+++.. .
T Consensus 160 ~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~-~ 236 (319)
T PLN03025 160 DQEILGRLMKVVEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC-L 236 (319)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-H
Confidence 34555555554 4568777888888887754 69999999998854321 1 112222333444444 3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH
Q 041816 336 NGKMDEASRLLELMILRGVNPNTS 359 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~~~g~~p~~~ 359 (396)
.+++++|...+.++...|..|...
T Consensus 237 ~~~~~~a~~~l~~ll~~g~~~~~I 260 (319)
T PLN03025 237 KGKFDDACDGLKQLYDLGYSPTDI 260 (319)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 578999999999999888776543
No 464
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=40.40 E-value=1.4e+02 Score=21.46 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=51.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199 (396)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 199 (396)
....++|..+.+.+...+. ....+--+-+..+.+.|++++|+ ..- .....||...|..|- -.+.|--+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~-~~~~~pdL~p~~AL~--a~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLP-QCHCYPDLEPWAALC--AWKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHH-TTS--GGGHHHHHHH--HHHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hhc-ccCCCccHHHHHHHH--HHhhccHHHHHHH
Confidence 4568899999998887653 22333334455677889999882 111 222356777775554 3577888888888
Q ss_pred HHHHHhcCCCccHHHH
Q 041816 200 FTKLKAFGCKPNVITY 215 (396)
Q Consensus 200 ~~~~~~~g~~~~~~~~ 215 (396)
+.++...| .|....|
T Consensus 92 l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 92 LTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHCT-S-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 88887766 3343333
No 465
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.20 E-value=2.3e+02 Score=24.09 Aligned_cols=104 Identities=15% Similarity=0.001 Sum_probs=51.0
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF----KRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
+++++++|++++..-. ..+.+.|+...|-++- +-..+.+.+.|......++..+...+.-
T Consensus 2 ~~kky~eAidLL~~Ga----------------~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA----------------LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HTT-HHHHHHHHHHHH----------------HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred ccccHHHHHHHHHHHH----------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Confidence 3456777777665431 1234445544443333 3333445566666556666665554432
Q ss_pred h-hHHHHHHHHHhc---C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 159 S-HGFVVLGRILRS---C--FTPDAVAFTSLIKGLCAESRIMEAAALFTK 202 (396)
Q Consensus 159 ~-~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 202 (396)
+ +-..+.+.+++. + ..-+......+...|.+.|++.+|+..|-.
T Consensus 66 ~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 66 EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 2 233334433321 1 122567777888888888888888876643
No 466
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.92 E-value=3.6e+02 Score=26.41 Aligned_cols=99 Identities=9% Similarity=0.077 Sum_probs=65.4
Q ss_pred HHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhH
Q 041816 70 LKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPP----LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145 (396)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 145 (396)
+|...=......++..++..+++.|..-...-+...- ......+.-+|....+.|.|.+++++..+.+ +.+..+-
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q 431 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQ 431 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHH
Confidence 3333334445567778899999999887665433111 1235556667778889999999999998864 2244444
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHH
Q 041816 146 NILINCFCKMGRVSHGFVVLGRIL 169 (396)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~ 169 (396)
-.+..+....|.-++|+.+.....
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHH
Confidence 555666677788888887766554
No 467
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=39.64 E-value=67 Score=21.44 Aligned_cols=13 Identities=8% Similarity=0.107 Sum_probs=5.6
Q ss_pred HHHHHHhCCCCCC
Q 041816 380 LFVSMESMGCKHT 392 (396)
Q Consensus 380 ~~~~m~~~g~~p~ 392 (396)
+++.+.+.|..++
T Consensus 74 ~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 74 IVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHTTT-TT
T ss_pred HHHHHHHcCCCCC
Confidence 4444444555444
No 468
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=39.63 E-value=3.5e+02 Score=25.89 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=38.9
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT---YNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
....++.-|.+.+++++|..++..|.=... .... .+.+++.+.+..--.+.+..++.+..
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~~~--g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWNTM--GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCcccc--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 345688899999999999999999853321 2233 34455555555544555555555554
No 469
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.33 E-value=1.4e+02 Score=21.52 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=23.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 147 (396)
+++.+.++...++|+++++.|.++|- .+...-+.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GE-It~e~A~e 100 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGE-ITPEEAKE 100 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 56667777888889999998888873 34443333
No 470
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.27 E-value=3.1e+02 Score=25.26 Aligned_cols=47 Identities=17% Similarity=0.076 Sum_probs=27.8
Q ss_pred HHHHHHHHhc---cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 041816 256 YTTIIDGLCK---EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302 (396)
Q Consensus 256 ~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 302 (396)
...+++++.+ .++.+.|+.++..|.+.|..|....-..++.++-..|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3344444443 4678888888888888777766555444444443333
No 471
>PHA03100 ankyrin repeat protein; Provisional
Probab=39.24 E-value=3.3e+02 Score=25.51 Aligned_cols=242 Identities=13% Similarity=0.092 Sum_probs=108.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhH--HHHHHH-----HHhcCChhhHHHHHHHHHhcCCCCCH---HHHHH
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY--NILINC-----FCKMGRVSHGFVVLGRILRSCFTPDA---VAFTS 182 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~li~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~ 182 (396)
.+...++.|+.+ +++.+.+.|..|+.... ...+.. ....|.. ++.+.+.+.|..++. ...+.
T Consensus 38 ~L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~----~iv~~Ll~~ga~i~~~d~~g~tp 109 (480)
T PHA03100 38 PLYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVK----EIVKLLLEYGANVNAPDNNGITP 109 (480)
T ss_pred hhhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchH----HHHHHHHHCCCCCCCCCCCCCch
Confidence 344455666654 44555566766654322 233344 4444443 344555566654432 12223
Q ss_pred HHHHHH--hcCCHHHHHHHHHHHHhcCCCccHHH--HHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCcccccCCHhhH
Q 041816 183 LIKGLC--AESRIMEAAALFTKLKAFGCKPNVIT--YSTLINGLCRTG--HTIVALNLFEEMANGNGKFGVVCKPNTVTY 256 (396)
Q Consensus 183 l~~~~~--~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
+...+ ..|+.+-+.. +.+.|..++... -...+...+..| +.+- ++.+.+.|.... ..+...
T Consensus 110 -L~~A~~~~~~~~~iv~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~i----v~~Ll~~g~din---~~d~~g- 176 (480)
T PHA03100 110 -LLYAISKKSNSYSIVEY----LLDNGANVNIKNSDGENLLHLYLESNKIDLKI----LKLLIDKGVDIN---AKNRYG- 176 (480)
T ss_pred -hhHHHhcccChHHHHHH----HHHcCCCCCccCCCCCcHHHHHHHcCCChHHH----HHHHHHCCCCcc---cccCCC-
Confidence 33333 6666654444 444554443221 123455556666 4443 333444441100 112222
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhH--------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hh
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY--------NSLIHGFCYANDWNEANCLLIEMMDQGVQPDV---VT 325 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--------~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~ 325 (396)
.+.+...+..|+.+-+ +.+.+.|..++.... ...+...+..|. ...++++.+.+.|..++. ..
T Consensus 177 ~tpL~~A~~~~~~~iv----~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g 250 (480)
T PHA03100 177 YTPLHIAVEKGNIDVI----KFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYG 250 (480)
T ss_pred CCHHHHHHHhCCHHHH----HHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCC
Confidence 2334455566665544 444455555543211 233333344454 113444555566655443 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041816 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTST---FSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391 (396)
Q Consensus 326 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 391 (396)
.+.|.. .+..|..+ +++.+.+.|..++... .+.+ ......|.. ++++.+.+.|...
T Consensus 251 ~TpL~~-A~~~~~~~----iv~~Ll~~gad~n~~d~~g~tpl-~~A~~~~~~----~iv~~Ll~~g~~i 309 (480)
T PHA03100 251 FTPLHY-AVYNNNPE----FVKYLLDLGANPNLVNKYGDTPL-HIAILNNNK----EIFKLLLNNGPSI 309 (480)
T ss_pred CCHHHH-HHHcCCHH----HHHHHHHcCCCCCccCCCCCcHH-HHHHHhCCH----HHHHHHHhcCCCH
Confidence 334433 34556543 4455556665554332 1222 233344554 4555566666543
No 472
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=38.79 E-value=3e+02 Score=24.88 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=36.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 041816 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC-KNGKMDEASRLLELMIL 351 (396)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 351 (396)
|..+.+.|.+..|+++.+-+...+..-|......+|+.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4556677777777777777776654435555555666654 55666666666665544
No 473
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.14 E-value=4.5e+02 Score=26.81 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=15.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHH
Q 041816 256 YTTIIDGLCKEGFVDKAKELFLQ 278 (396)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~ 278 (396)
|..++..+.+.|.+++|++++..
T Consensus 533 ~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 533 YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666777777777776654
No 474
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.88 E-value=3.7e+02 Score=25.71 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=52.4
Q ss_pred HHHHHHHHH-HhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C------------CCHhhHHHHHHHHHh
Q 041816 270 DKAKELFLQ-MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV-Q------------PDVVTFNVIMDELCK 335 (396)
Q Consensus 270 ~~a~~~~~~-m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~------------p~~~~~~~l~~~~~~ 335 (396)
++..+.+.. +.+.|+..+......++... .|++..|..+++++...|- . ++......+++++.
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~- 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA- 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 344444444 34567776776666666553 6899999999988775431 1 12222233444443
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH
Q 041816 336 NGKMDEASRLLELMILRGVNPNT 358 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~~~g~~p~~ 358 (396)
.|+.+.+..++++|...|..|..
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHH
Confidence 37778888888888887766543
No 475
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=37.75 E-value=1.3e+02 Score=20.48 Aligned_cols=43 Identities=28% Similarity=0.318 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 344 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
++|+-....|+..|+.+|..+++.+.-.=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5555555566666666666666665555555566666666643
No 476
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.52 E-value=95 Score=22.24 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 041816 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341 (396)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 341 (396)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+.+.|-+.+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3455555666677788888888887766677766666777777776543
No 477
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=37.23 E-value=1.6e+02 Score=21.27 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=19.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041816 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364 (396)
Q Consensus 329 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 364 (396)
+++.+.++...++|+++++.|.++| ..+...-+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3444556666677777777777665 3344433333
No 478
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=36.85 E-value=4.2e+02 Score=26.07 Aligned_cols=46 Identities=9% Similarity=0.150 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 155 (396)
..|. +|-.|.+.|++++|.++..+.... .......+...+..|...
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3564 566788999999999999555432 334455667777777654
No 479
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=36.66 E-value=5e+02 Score=26.91 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL-RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383 (396)
Q Consensus 305 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 383 (396)
++-.+.|.++.+---.-|..++..-...+...|++..+.+++.++.+ .|-.++...|-.++..+...|-- ...-+++.
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~~ 1291 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVKN 1291 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHhh
Confidence 33444454444322234555666666666677778888887777765 34556666666666666555543 33344444
Q ss_pred HH
Q 041816 384 ME 385 (396)
Q Consensus 384 m~ 385 (396)
+.
T Consensus 1292 ~~ 1293 (1304)
T KOG1114|consen 1292 WM 1293 (1304)
T ss_pred he
Confidence 44
No 480
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=36.20 E-value=3e+02 Score=24.21 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=58.0
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH----------HHHH--HHHhcCCHHHHHHH
Q 041816 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN----------VIMD--ELCKNGKMDEASRL 345 (396)
Q Consensus 278 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~----------~l~~--~~~~~g~~~~A~~~ 345 (396)
-..+.|+..|...+..++.. ..|++..|+.+++.+-..|-..+...-+ .+.+ -.+..++..+..+.
T Consensus 200 Ia~~E~v~~d~~al~~I~~~--S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~~~v~~ 277 (346)
T KOG0989|consen 200 IASKEGVDIDDDALKLIAKI--SDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLELALSADTPNTVKR 277 (346)
T ss_pred HHHHhCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHHHHHccChHHHHHH
Confidence 33456667777777777663 4678888888877766544333311111 1111 23567888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHH
Q 041816 346 LELMILRGVNPNTSTFSTLMDGFCLT-GRVNHAKE 379 (396)
Q Consensus 346 ~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~ 379 (396)
.+++.+.|..| ....+.|....... |..+.-..
T Consensus 278 ~Rei~~sg~~~-~~lmsQLa~vi~~~~g~~d~~k~ 311 (346)
T KOG0989|consen 278 VREIMRSGYSP-LQLMSQLAEVIMDIIGLSDEQKA 311 (346)
T ss_pred HHHHHHhccCH-HHHHHHHHHHHHhccccchHHHH
Confidence 88888887654 34445555555444 55444443
No 481
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.95 E-value=2.8e+02 Score=23.67 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=16.2
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHH
Q 041816 252 NTVTYTTIIDGLCKEGFVDKAKELF 276 (396)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~a~~~~ 276 (396)
+......+...|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5566677777777777777776554
No 482
>PHA03100 ankyrin repeat protein; Provisional
Probab=35.31 E-value=3.8e+02 Score=25.09 Aligned_cols=80 Identities=9% Similarity=-0.006 Sum_probs=36.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHH--HHHHHH-----HHhcCCHHHHHHHHHHHHhcCCCccHHH--HHHH
Q 041816 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF--TSLIKG-----LCAESRIMEAAALFTKLKAFGCKPNVIT--YSTL 218 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~-----~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~l 218 (396)
.+...++.|+.+ +++.+++.|..++.... ...+.. ....|+.+ +.+.+.+.|..++... -.+.
T Consensus 38 ~L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~tp 109 (480)
T PHA03100 38 PLYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGITP 109 (480)
T ss_pred hhhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCch
Confidence 344445556643 44555566665543321 223333 34444433 3344445555444322 2445
Q ss_pred HHHHH--hcCChHHHHHHH
Q 041816 219 INGLC--RTGHTIVALNLF 235 (396)
Q Consensus 219 l~~~~--~~g~~~~a~~~~ 235 (396)
+...+ ..|+.+-+..++
T Consensus 110 L~~A~~~~~~~~~iv~~Ll 128 (480)
T PHA03100 110 LLYAISKKSNSYSIVEYLL 128 (480)
T ss_pred hhHHHhcccChHHHHHHHH
Confidence 55555 555555444433
No 483
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.27 E-value=3.3e+02 Score=24.34 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041816 305 NEANCLLIEMMDQGVQPDV----VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369 (396)
Q Consensus 305 ~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 369 (396)
+++..++.++++. .|+. .-|-.++......|.++.++.+|++++..|-.|-...-..+++.+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4566666666653 3443 3456667777777888888888888888887777777666666654
No 484
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=34.92 E-value=3.3e+02 Score=24.27 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHH------HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 041816 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGF------CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~------~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 342 (396)
++++..+++.....+. |.+......|.++ ...-+|.....+|+-+.. +.|+.+.--.-.-+..+..-.+.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHhH
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 343 SRLLELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 343 ~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
+.+.+-+... ++.-....+..-...+.+.|+.++|..-|++...
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
No 485
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.91 E-value=2.1e+02 Score=25.36 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=59.5
Q ss_pred HHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHH
Q 041816 70 LKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPP--LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYN 146 (396)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~ 146 (396)
+.+..+.-|+.+.+..++..|...|..-++.....|+ .+.|+.-..+-...|++..|+.=....+... |+ .-.|.
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~--P~h~Ka~~ 157 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK--PTHLKAYI 157 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC--cchhhhhh
Confidence 3344455567777778888888888877766554444 3456666656566677777777666666543 33 33444
Q ss_pred HHHHHHHhcCChhhHHHHHHHHH
Q 041816 147 ILINCFCKMGRVSHGFVVLGRIL 169 (396)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~~~ 169 (396)
.-..++....++.+|..+.++..
T Consensus 158 R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhh
Confidence 44455556666666666555543
No 486
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=34.89 E-value=1.7e+02 Score=20.81 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=15.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 041816 112 LLFGCLAKTKHYDTVLSLFKRL 133 (396)
Q Consensus 112 ~l~~~~~~~~~~~~a~~~~~~~ 133 (396)
.++.-|...++.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 4555667778888888888775
No 487
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=34.81 E-value=3.1e+02 Score=23.93 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 041816 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307 (396)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 307 (396)
.+.|.+.|+.....+.... ...+......++....+.|+.+.-..+++..... .+...-..++.+.+...+.+..
T Consensus 146 ~~~a~~~~~~~~~~~~~~~--~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~ 220 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPE--SSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELL 220 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TT--STS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHH
T ss_pred HHHHHHHHHHHhcCCcccc--cccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHH
Confidence 4577888888777532100 0234555666777777888877766666666544 2677778899999889999998
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH--HHHHHHHH----HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 041816 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM--DEASRLLE----LMILRGVNPNTSTFSTLMDGFCL----TGRVNHA 377 (396)
Q Consensus 308 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~----~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A 377 (396)
.++++.+...+..++... ..++.++...+.. +.+.+.+. .+.+. ...+......++..+.. ....++.
T Consensus 221 ~~~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 298 (324)
T PF11838_consen 221 KRLLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDEL 298 (324)
T ss_dssp HHHHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHH
T ss_pred HHHHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHH
Confidence 999998887542233333 3344444423333 55555543 34333 33332245555554433 3344444
Q ss_pred HHHHHH
Q 041816 378 KELFVS 383 (396)
Q Consensus 378 ~~~~~~ 383 (396)
.++|+.
T Consensus 299 ~~f~~~ 304 (324)
T PF11838_consen 299 EEFFED 304 (324)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 444433
No 488
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=34.67 E-value=4.2e+02 Score=25.36 Aligned_cols=86 Identities=13% Similarity=0.162 Sum_probs=54.5
Q ss_pred HHHHHHHHHHH-hhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC------C----------CCCHhhHHHHHH
Q 041816 269 VDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG------V----------QPDVVTFNVIMD 331 (396)
Q Consensus 269 ~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~----------~p~~~~~~~l~~ 331 (396)
.++..+.++.. .+.|+..+......++.. ..|++..|...++++...+ + ..+....-.+++
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ 266 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVE 266 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 44555555554 345777777777776664 4689999999999885432 1 112222233444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041816 332 ELCKNGKMDEASRLLELMILRGVNPN 357 (396)
Q Consensus 332 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 357 (396)
+.. .|+.++|+.+++++...|..|.
T Consensus 267 ai~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 267 YII-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 444 4888888888888888876543
No 489
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=34.17 E-value=1.1e+02 Score=31.64 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=30.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCH
Q 041816 119 KTKHYDTVLSLFKRLNSTGLFPDLY-TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 177 (396)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 177 (396)
....+.+++++|+.|...|+..... .|......+.+.+.+.+|..+|..-++....|-.
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~ 149 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLE 149 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 3344555666666665555444332 3334444455555566666666555554444433
No 490
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=34.15 E-value=2.6e+02 Score=22.75 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV-TFNVIMDELCKNGKMDEASRLLELM 349 (396)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m 349 (396)
...+.++..|...|+++.|.++|.-+++.. ..|.. .|..=+..+.+.+.-....+.++.|
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 345677777777788888888887777643 23332 3343344444444433333444433
No 491
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=34.05 E-value=3.2e+02 Score=23.85 Aligned_cols=82 Identities=15% Similarity=0.009 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCC----CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 193 IMEAAALFTKLKAFGC----KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
.+.|.+.|+.....+. ..+......++....+.|+.+.-..+++..... .+......++.+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---------~~~~~k~~~l~aLa~~~d 216 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---------TSPEEKRRLLSALACSPD 216 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---------STHHHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---------CCHHHHHHHHHhhhccCC
Confidence 3455666666555311 223344444555555555555444444444432 345556666666666666
Q ss_pred HHHHHHHHHHHhhCC
Q 041816 269 VDKAKELFLQMKDKN 283 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~ 283 (396)
.+...++++.....+
T Consensus 217 ~~~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 217 PELLKRLLDLLLSND 231 (324)
T ss_dssp HHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHcCCc
Confidence 666666666666643
No 492
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=33.87 E-value=80 Score=16.85 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHH
Q 041816 339 MDEASRLLELMILRGVNPNTSTFS 362 (396)
Q Consensus 339 ~~~A~~~~~~m~~~g~~p~~~~~~ 362 (396)
++.|..+|+..+.. .|++.+|.
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHHH
Confidence 45566666665552 45555543
No 493
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=33.54 E-value=1.4e+02 Score=19.56 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
+.+.|..++..+.... +.++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~de-------kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-------KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-------hcChHHHHHHHHHHHHc
Confidence 4567777787777654 56788898887766554
No 494
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=33.39 E-value=3.9e+02 Score=24.59 Aligned_cols=151 Identities=10% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc---CC
Q 041816 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTG--HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE---GF 268 (396)
Q Consensus 194 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~ 268 (396)
++|..++-.+..-....-..+...+..+.-... ..+...+++++-.... ..+...+--+++++-+. .+
T Consensus 192 ~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~-------Dk~gD~hYdliSA~hKSvRGSD 264 (436)
T COG2256 192 EEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARF-------DKDGDAHYDLISALHKSVRGSD 264 (436)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhcc-------CCCcchHHHHHHHHHHhhccCC
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041816 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND-----WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 343 (396)
.+.|+-++-.|.+.|..|-...-..++-++-.-|. ..-|...++.....|.+-........+-.++-.-+-..+.
T Consensus 265 ~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~~i~LAqavvyLA~aPKSNavY 344 (436)
T COG2256 265 PDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSPEARIALAQAVVYLALAPKSNAVY 344 (436)
T ss_pred cCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCccHHHH
Q ss_pred HHHHHHHh
Q 041816 344 RLLELMIL 351 (396)
Q Consensus 344 ~~~~~m~~ 351 (396)
..|+.+.+
T Consensus 345 ~A~~~A~~ 352 (436)
T COG2256 345 TAINAALA 352 (436)
T ss_pred HHHHHHHH
No 495
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=32.98 E-value=4.4e+02 Score=25.18 Aligned_cols=140 Identities=19% Similarity=0.345 Sum_probs=71.2
Q ss_pred ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 041816 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306 (396)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 306 (396)
+.-+|.+++..+...-+.++. +-.+...||++|++ -.++...++.-|.+.++- ....+++|+.-.-+-.....
T Consensus 595 nI~~a~~my~~i~e~~Rlyss-CfKN~iIYNaVISg-----IheqmK~lmkl~PR~~iL-~DiHF~aLL~K~kKp~K~~~ 667 (782)
T PF07218_consen 595 NIYEALQMYSYIAEYIRLYSS-CFKNMIIYNAVISG-----IHEQMKNLMKLMPRKPIL-KDIHFEALLNKEKKPQKITR 667 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhhhHhHHHHHHH-----HHHHHHHHHHhCCCcchh-HHHHHHHHhhhccccccccc
Confidence 555666666655443222221 34566777777764 345666677777666554 44566666654432111001
Q ss_pred HHHHHHHHHHCCCCCCHhhH----------HHHHHHHHhcCCHHHHHHHHHHHHhC-------------CCCCCHHHHHH
Q 041816 307 ANCLLIEMMDQGVQPDVVTF----------NVIMDELCKNGKMDEASRLLELMILR-------------GVNPNTSTFST 363 (396)
Q Consensus 307 a~~~~~~~~~~~~~p~~~~~----------~~l~~~~~~~g~~~~A~~~~~~m~~~-------------g~~p~~~~~~~ 363 (396)
...+. ..|++..| ..+|.+|.....- +...+..+|.-. .-.|+...+..
T Consensus 668 td~v~-------YdPTVKsyAL~~LeR~PmvsvInsfFEaKKK-~Ls~i~aqmKLDlfSL~nedlKiP~d~~~nsKL~~k 739 (782)
T PF07218_consen 668 TDYVL-------YDPTVKSYALTELEREPMVSVINSFFEAKKK-DLSDIMAQMKLDLFSLTNEDLKIPNDKGANSKLTAK 739 (782)
T ss_pred cccee-------cCchHHHHHhhhhccchHHHHHHHHHHHHHH-HHHHHHHHHhhhHHhhccccccCCCCCCcchHHHHH
Confidence 10000 12333332 4456666554322 223333333310 12467777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 041816 364 LMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 364 li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
||.-| -.|...+|++|..
T Consensus 740 LiskY-----K~EIK~~FkEMr~ 757 (782)
T PF07218_consen 740 LISKY-----KKEIKKLFKEMRD 757 (782)
T ss_pred HHHHH-----HHHHHHHHHHHHH
Confidence 88877 4566777777764
No 496
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=32.56 E-value=1.6e+02 Score=20.04 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=5.1
Q ss_pred cCCCCCHHHHHHHH
Q 041816 171 SCFTPDAVAFTSLI 184 (396)
Q Consensus 171 ~~~~~~~~~~~~l~ 184 (396)
.|+..|..+|..++
T Consensus 37 AGv~~dp~VFriil 50 (88)
T PF12926_consen 37 AGVPMDPEVFRIIL 50 (88)
T ss_pred hCCCcChHHHHHHH
Confidence 33333333333333
No 497
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.28 E-value=5e+02 Score=25.58 Aligned_cols=87 Identities=13% Similarity=0.036 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-------------CChhhHHH
Q 041816 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN-------------PDVVTYNS 293 (396)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------------p~~~~~~~ 293 (396)
..++..+.+.......+ +..+......++. ...|+...++.++++....+-. .+......
T Consensus 184 s~eei~~~L~~i~~~eg-----i~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~ 256 (618)
T PRK14951 184 APETVLEHLTQVLAAEN-----VPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFR 256 (618)
T ss_pred CHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHH
Confidence 34555666666666553 3445555555555 3458999999999876544311 12233344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 041816 294 LIHGFCYANDWNEANCLLIEMMDQGVQP 321 (396)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~p 321 (396)
++.++ ..|+...++.+++++.+.|..+
T Consensus 257 LldaL-~~~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 257 LIDAL-AQGDGRTVVETADELRLNGLSA 283 (618)
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHcCCCH
Confidence 55544 4478889999999998887554
No 498
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.08 E-value=2.3e+02 Score=21.54 Aligned_cols=63 Identities=13% Similarity=0.186 Sum_probs=39.3
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 041816 277 LQMKDKNINPDVVTYNSLIHGFCYA-NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340 (396)
Q Consensus 277 ~~m~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 340 (396)
+.+.+.|.+++.. -..++..+... +..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 6 ~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3445566664433 34444555543 457788888888888776666666656666677766553
No 499
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.61 E-value=1.9e+02 Score=20.42 Aligned_cols=57 Identities=11% Similarity=0.015 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccC
Q 041816 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396 (396)
Q Consensus 338 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty 396 (396)
+.....+.+++....+....+-....|.-.|.+.|+.+.|.+-|+.=.. .-|.+.+|
T Consensus 52 Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~f 108 (121)
T COG4259 52 QTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVF 108 (121)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhH
No 500
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=31.47 E-value=2.9e+02 Score=22.49 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 170 (396)
....+.++..+...|+++.|-++|.-+.+..-..=...|..-+..+.+.+.-....+.++.+..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Done!