Query 041816
Match_columns 396
No_of_seqs 670 out of 2330
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 18:48:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.4E-33 8.2E-38 258.3 24.9 206 160-371 8-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 6.1E-33 2.1E-37 255.6 24.2 195 109-335 28-222 (501)
3 2xpi_A Anaphase-promoting comp 100.0 5.9E-29 2E-33 237.2 35.1 299 75-388 276-580 (597)
4 2xpi_A Anaphase-promoting comp 100.0 2.4E-28 8.1E-33 233.0 28.4 294 80-388 209-546 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 6.7E-25 2.3E-29 197.9 33.9 299 77-392 73-371 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 7.1E-24 2.4E-28 191.2 35.6 292 81-387 43-334 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 5.5E-23 1.9E-27 189.0 37.7 296 79-392 34-361 (450)
8 3ieg_A DNAJ homolog subfamily 99.9 1.5E-20 5.1E-25 167.0 36.5 295 79-388 11-336 (359)
9 2y4t_A DNAJ homolog subfamily 99.9 2.5E-21 8.4E-26 177.9 31.9 282 90-387 11-324 (450)
10 1fch_A Peroxisomal targeting s 99.9 2.9E-21 9.8E-26 172.6 25.6 292 80-383 34-355 (368)
11 3hym_B Cell division cycle pro 99.9 4.5E-20 1.5E-24 162.1 30.1 280 82-375 33-322 (330)
12 3hym_B Cell division cycle pro 99.9 6.1E-20 2.1E-24 161.2 29.9 271 105-387 20-299 (330)
13 2gw1_A Mitochondrial precursor 99.9 2.1E-20 7.3E-25 174.5 28.5 295 78-387 13-401 (514)
14 2gw1_A Mitochondrial precursor 99.9 9.7E-20 3.3E-24 170.0 29.2 232 144-387 239-478 (514)
15 4eqf_A PEX5-related protein; a 99.9 5.1E-20 1.7E-24 164.5 24.3 265 106-383 64-352 (365)
16 3fp2_A TPR repeat-containing p 99.9 3.7E-19 1.3E-23 167.2 28.7 297 76-388 30-408 (537)
17 3ieg_A DNAJ homolog subfamily 99.9 5.3E-18 1.8E-22 150.5 34.5 270 106-387 2-301 (359)
18 3cv0_A Peroxisome targeting si 99.9 3E-19 1E-23 156.5 24.7 267 106-384 20-312 (327)
19 3fp2_A TPR repeat-containing p 99.8 3.7E-18 1.3E-22 160.3 31.8 297 78-388 66-492 (537)
20 4eqf_A PEX5-related protein; a 99.8 1.8E-19 6.3E-24 160.8 21.2 257 81-348 75-352 (365)
21 3cv0_A Peroxisome targeting si 99.8 5E-19 1.7E-23 155.1 22.7 256 82-350 32-313 (327)
22 1fch_A Peroxisomal targeting s 99.8 7.4E-19 2.5E-23 156.9 23.4 257 81-349 74-356 (368)
23 3mkr_A Coatomer subunit epsilo 99.8 1.8E-17 6.2E-22 142.7 25.6 272 82-379 10-286 (291)
24 3spa_A Mtrpol, DNA-directed RN 99.8 5.7E-20 2E-24 174.9 9.8 138 250-392 124-265 (1134)
25 3mkr_A Coatomer subunit epsilo 99.8 3.9E-17 1.4E-21 140.6 25.7 252 115-388 7-265 (291)
26 3spa_A Mtrpol, DNA-directed RN 99.8 2E-19 6.9E-24 171.1 8.8 165 107-278 127-306 (1134)
27 3uq3_A Heat shock protein STI1 99.8 1.7E-16 5.8E-21 134.0 24.1 227 106-352 4-236 (258)
28 1b89_A Protein (clathrin heavy 99.8 2.9E-18 9.9E-23 151.4 13.0 251 83-382 15-267 (449)
29 3uq3_A Heat shock protein STI1 99.8 5.7E-16 2E-20 130.7 24.7 226 142-387 5-236 (258)
30 2pl2_A Hypothetical conserved 99.7 2.6E-16 8.9E-21 129.5 21.0 199 175-385 3-212 (217)
31 2xm6_A Protein corresponding t 99.7 3.7E-14 1.3E-18 131.6 38.0 283 84-388 92-433 (490)
32 2xm6_A Protein corresponding t 99.7 6.1E-14 2.1E-18 130.1 39.4 273 83-386 55-359 (490)
33 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.9E-16 9.9E-21 134.0 20.7 253 78-346 12-269 (275)
34 2pl2_A Hypothetical conserved 99.7 5.6E-16 1.9E-20 127.5 21.0 199 140-350 3-212 (217)
35 3u4t_A TPR repeat-containing p 99.7 3.8E-15 1.3E-19 126.9 25.5 235 108-352 4-250 (272)
36 2h6f_A Protein farnesyltransfe 99.7 1.8E-15 6.2E-20 134.6 24.1 250 105-369 95-364 (382)
37 1ouv_A Conserved hypothetical 99.7 3.4E-14 1.1E-18 121.2 31.0 225 105-353 4-252 (273)
38 1ouv_A Conserved hypothetical 99.7 5.6E-14 1.9E-18 119.9 31.1 224 141-388 5-252 (273)
39 1b89_A Protein (clathrin heavy 99.7 1.4E-16 4.9E-21 140.7 15.0 264 73-380 34-304 (449)
40 2ho1_A Type 4 fimbrial biogene 99.7 1.3E-14 4.4E-19 122.1 26.5 201 107-317 37-238 (252)
41 1xnf_A Lipoprotein NLPI; TPR, 99.7 8.3E-16 2.8E-20 131.1 19.5 248 118-381 16-269 (275)
42 2ho1_A Type 4 fimbrial biogene 99.7 1.7E-14 5.8E-19 121.4 26.9 202 142-352 37-238 (252)
43 3u4t_A TPR repeat-containing p 99.7 7.7E-15 2.6E-19 125.0 24.2 237 142-388 3-251 (272)
44 2h6f_A Protein farnesyltransfe 99.7 7.8E-15 2.7E-19 130.6 24.8 233 142-387 97-348 (382)
45 2vq2_A PILW, putative fimbrial 99.7 2.3E-14 7.8E-19 118.2 25.7 203 105-316 6-210 (225)
46 2q7f_A YRRB protein; TPR, prot 99.7 3.5E-15 1.2E-19 124.8 20.7 197 109-316 25-221 (243)
47 2q7f_A YRRB protein; TPR, prot 99.7 4E-15 1.4E-19 124.4 20.6 213 140-364 21-233 (243)
48 2vq2_A PILW, putative fimbrial 99.7 3.6E-14 1.2E-18 116.9 25.7 203 141-351 7-210 (225)
49 2ooe_A Cleavage stimulation fa 99.7 4.1E-13 1.4E-17 125.9 35.1 169 211-388 271-455 (530)
50 4g1t_A Interferon-induced prot 99.7 8.3E-14 2.8E-18 128.5 28.3 299 78-387 58-401 (472)
51 4a1s_A PINS, partner of inscut 99.7 4.5E-15 1.5E-19 134.5 19.1 278 108-387 49-372 (411)
52 4g1t_A Interferon-induced prot 99.7 2.3E-13 7.9E-18 125.5 30.9 278 102-390 46-366 (472)
53 3sf4_A G-protein-signaling mod 99.7 1.1E-14 3.8E-19 131.4 20.3 280 105-386 7-335 (406)
54 3sf4_A G-protein-signaling mod 99.6 3.6E-15 1.2E-19 134.6 15.2 293 81-374 19-363 (406)
55 4a1s_A PINS, partner of inscut 99.6 5.8E-15 2E-19 133.7 16.4 273 79-352 56-372 (411)
56 3ro2_A PINS homolog, G-protein 99.6 1.5E-14 5.1E-19 126.7 17.6 278 108-387 6-332 (338)
57 2ond_A Cleavage stimulation fa 99.6 4.3E-13 1.5E-17 116.5 26.1 218 88-317 33-270 (308)
58 2ond_A Cleavage stimulation fa 99.6 1.5E-12 5.2E-17 113.0 28.4 217 124-352 33-270 (308)
59 3ro2_A PINS homolog, G-protein 99.6 1E-14 3.4E-19 127.9 14.4 273 79-352 13-332 (338)
60 3ulq_A Response regulator aspa 99.6 1.1E-13 3.8E-18 124.2 21.1 299 82-386 23-367 (383)
61 2ooe_A Cleavage stimulation fa 99.6 7.1E-12 2.4E-16 117.4 32.7 218 160-387 256-492 (530)
62 4abn_A Tetratricopeptide repea 99.6 9.9E-14 3.4E-18 127.9 19.5 212 87-312 84-316 (474)
63 3vtx_A MAMA; tetratricopeptide 99.6 8.3E-13 2.8E-17 105.4 22.1 166 106-281 4-169 (184)
64 3nf1_A KLC 1, kinesin light ch 99.6 1.6E-14 5.4E-19 125.4 12.8 177 105-281 25-223 (311)
65 3vtx_A MAMA; tetratricopeptide 99.6 9.2E-13 3.2E-17 105.1 22.1 163 143-315 6-168 (184)
66 4abn_A Tetratricopeptide repea 99.6 1.6E-13 5.6E-18 126.4 19.7 217 121-349 82-318 (474)
67 3nf1_A KLC 1, kinesin light ch 99.6 2.7E-14 9.4E-19 123.9 12.9 245 141-386 26-306 (311)
68 1hz4_A MALT regulatory protein 99.5 9.8E-12 3.4E-16 110.9 28.3 295 78-387 21-349 (373)
69 1xi4_A Clathrin heavy chain; a 99.5 4.8E-12 1.7E-16 124.9 27.9 252 78-385 1056-1307(1630)
70 1xi4_A Clathrin heavy chain; a 99.5 9.1E-12 3.1E-16 123.0 29.0 251 83-382 1088-1340(1630)
71 3e4b_A ALGK; tetratricopeptide 99.5 4.3E-12 1.5E-16 116.1 23.4 279 76-388 40-352 (452)
72 1hz4_A MALT regulatory protein 99.5 1.6E-11 5.4E-16 109.6 26.5 274 110-386 17-321 (373)
73 4gyw_A UDP-N-acetylglucosamine 99.5 2.5E-12 8.5E-17 123.4 20.0 169 103-281 5-173 (723)
74 3q15_A PSP28, response regulat 99.5 8.2E-12 2.8E-16 111.7 21.7 299 83-386 24-364 (378)
75 3as5_A MAMA; tetratricopeptide 99.5 1.1E-11 3.8E-16 98.4 19.6 166 212-387 8-173 (186)
76 3as5_A MAMA; tetratricopeptide 99.5 1.3E-11 4.4E-16 98.0 19.9 166 107-282 8-173 (186)
77 4gyw_A UDP-N-acetylglucosamine 99.4 6.9E-12 2.4E-16 120.4 20.8 166 141-316 8-173 (723)
78 3e4b_A ALGK; tetratricopeptide 99.4 3.9E-11 1.3E-15 109.8 24.8 276 85-389 88-389 (452)
79 3ulq_A Response regulator aspa 99.4 8.2E-12 2.8E-16 111.9 19.8 235 113-351 109-367 (383)
80 4i17_A Hypothetical protein; T 99.4 2.5E-11 8.6E-16 100.3 21.1 197 105-318 5-210 (228)
81 3edt_B KLC 2, kinesin light ch 99.4 5.1E-12 1.7E-16 107.7 16.0 139 143-281 44-197 (283)
82 3edt_B KLC 2, kinesin light ch 99.4 5.8E-12 2E-16 107.4 15.7 234 153-387 12-281 (283)
83 4i17_A Hypothetical protein; T 99.4 1.1E-10 3.7E-15 96.4 21.3 195 140-352 5-209 (228)
84 3q15_A PSP28, response regulat 99.4 9.1E-11 3.1E-15 104.9 21.1 234 79-316 109-364 (378)
85 3mv2_B Coatomer subunit epsilo 99.3 1.2E-09 4.2E-14 92.6 23.7 179 161-352 85-282 (310)
86 1qqe_A Vesicular transport pro 99.3 2.4E-10 8.1E-15 98.3 18.9 212 122-351 32-268 (292)
87 1qqe_A Vesicular transport pro 99.3 3E-10 1E-14 97.6 17.8 238 125-386 3-268 (292)
88 3dra_A Protein farnesyltransfe 99.2 1.3E-08 4.4E-13 87.1 26.4 229 123-363 49-298 (306)
89 2pzi_A Probable serine/threoni 99.2 1.2E-10 3.9E-15 112.2 15.0 174 82-268 402-583 (681)
90 3mv2_B Coatomer subunit epsilo 99.2 3E-09 1E-13 90.2 21.4 181 126-317 85-282 (310)
91 2fo7_A Synthetic consensus TPR 99.2 1.3E-09 4.3E-14 81.3 17.5 58 111-169 5-62 (136)
92 3rjv_A Putative SEL1 repeat pr 99.2 3.9E-09 1.3E-13 86.0 21.6 176 160-353 4-198 (212)
93 2pzi_A Probable serine/threoni 99.2 2.5E-10 8.4E-15 109.9 16.7 174 118-303 402-583 (681)
94 2fo7_A Synthetic consensus TPR 99.2 1.3E-09 4.3E-14 81.3 17.1 90 148-239 7-96 (136)
95 3qky_A Outer membrane assembly 99.2 1.2E-09 4.1E-14 92.2 18.8 100 142-242 15-127 (261)
96 3urz_A Uncharacterized protein 99.2 1.2E-09 4.1E-14 88.8 17.9 137 217-365 59-197 (208)
97 3dra_A Protein farnesyltransfe 99.2 1.5E-08 5.3E-13 86.6 25.2 220 86-317 48-287 (306)
98 3qky_A Outer membrane assembly 99.2 2E-09 6.9E-14 90.8 19.1 172 175-352 13-224 (261)
99 3urz_A Uncharacterized protein 99.2 1.4E-09 4.9E-14 88.3 17.3 187 107-326 4-193 (208)
100 3rjv_A Putative SEL1 repeat pr 99.2 5.5E-09 1.9E-13 85.1 20.9 178 194-389 3-199 (212)
101 2vsy_A XCC0866; transferase, g 99.2 1.6E-09 5.5E-14 102.3 18.5 154 84-242 2-158 (568)
102 4ga2_A E3 SUMO-protein ligase 99.1 5E-10 1.7E-14 85.8 11.5 146 77-227 3-149 (150)
103 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.9E-08 9.8E-13 81.6 22.2 202 143-388 5-214 (225)
104 3qou_A Protein YBBN; thioredox 99.1 3.9E-09 1.3E-13 90.3 17.1 165 141-315 116-282 (287)
105 4ga2_A E3 SUMO-protein ligase 99.1 6.1E-10 2.1E-14 85.4 10.8 146 113-268 3-149 (150)
106 2ifu_A Gamma-SNAP; membrane fu 99.1 1.6E-09 5.4E-14 93.8 14.5 135 214-350 78-222 (307)
107 2r5s_A Uncharacterized protein 99.1 1.8E-09 6.1E-14 85.2 13.6 63 252-314 107-170 (176)
108 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.2E-08 7.6E-13 82.3 20.3 203 106-352 3-213 (225)
109 4e6h_A MRNA 3'-END-processing 99.1 2.4E-07 8.2E-12 88.1 29.8 170 211-388 342-534 (679)
110 2vsy_A XCC0866; transferase, g 99.1 4.5E-09 1.5E-13 99.2 18.1 156 120-285 2-160 (568)
111 2r5s_A Uncharacterized protein 99.1 1.4E-09 4.7E-14 85.8 12.2 155 81-240 16-172 (176)
112 2ifu_A Gamma-SNAP; membrane fu 99.1 1.4E-08 4.9E-13 87.8 19.5 178 84-280 29-222 (307)
113 3qou_A Protein YBBN; thioredox 99.1 6.8E-09 2.3E-13 88.9 16.9 163 176-348 116-280 (287)
114 3q7a_A Farnesyltransferase alp 99.1 1.9E-07 6.5E-12 80.8 25.3 221 121-352 68-331 (349)
115 3q7a_A Farnesyltransferase alp 99.0 2.5E-07 8.7E-12 80.0 23.9 220 86-317 69-331 (349)
116 3u3w_A Transcriptional activat 99.0 4.1E-07 1.4E-11 78.0 24.7 165 217-386 80-265 (293)
117 4e6h_A MRNA 3'-END-processing 99.0 1.3E-07 4.5E-12 89.9 22.4 230 89-331 327-582 (679)
118 2c2l_A CHIP, carboxy terminus 98.9 2.1E-08 7.2E-13 85.5 14.5 194 176-386 3-198 (281)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.3E-07 4.4E-12 76.8 18.4 135 145-284 9-152 (213)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.3E-07 4.5E-12 76.7 18.5 130 178-318 7-151 (213)
121 2qfc_A PLCR protein; TPR, HTH, 98.9 9E-07 3.1E-11 75.8 23.1 167 217-384 80-263 (293)
122 2e2e_A Formate-dependent nitri 98.9 3.3E-08 1.1E-12 77.8 13.0 126 78-207 17-145 (177)
123 3u3w_A Transcriptional activat 98.9 5.2E-08 1.8E-12 83.6 14.8 160 81-240 85-265 (293)
124 1a17_A Serine/threonine protei 98.9 1.5E-07 5.2E-12 72.8 15.8 93 181-281 17-109 (166)
125 1a17_A Serine/threonine protei 98.8 1.8E-07 6.1E-12 72.4 16.0 126 145-279 16-143 (166)
126 4gco_A Protein STI-1; structur 98.8 1.2E-07 4.1E-12 70.0 14.2 93 146-240 17-109 (126)
127 4f3v_A ESX-1 secretion system 98.8 7.6E-08 2.6E-12 80.5 14.3 188 83-283 18-238 (282)
128 4gco_A Protein STI-1; structur 98.8 1.8E-07 6.1E-12 69.1 15.0 113 105-220 11-123 (126)
129 2qfc_A PLCR protein; TPR, HTH, 98.8 4.1E-07 1.4E-11 77.9 19.1 173 107-280 75-264 (293)
130 1p5q_A FKBP52, FK506-binding p 98.8 1E-08 3.5E-13 89.8 9.1 152 85-240 127-293 (336)
131 2c2l_A CHIP, carboxy terminus 98.8 3.5E-08 1.2E-12 84.1 12.1 195 105-316 2-198 (281)
132 3gw4_A Uncharacterized protein 98.8 8.9E-08 3.1E-12 77.0 13.7 158 82-241 3-176 (203)
133 1na0_A Designed protein CTPR3; 98.8 2.4E-07 8.1E-12 67.7 14.7 93 145-239 12-104 (125)
134 3gw4_A Uncharacterized protein 98.8 8.7E-08 3E-12 77.0 12.8 161 189-351 4-175 (203)
135 2lni_A Stress-induced-phosphop 98.8 2.5E-07 8.4E-12 68.6 14.4 120 104-226 13-132 (133)
136 1na0_A Designed protein CTPR3; 98.8 4E-07 1.4E-11 66.4 15.4 117 106-225 8-124 (125)
137 2lni_A Stress-induced-phosphop 98.8 2.9E-07 9.8E-12 68.2 14.7 120 139-267 13-132 (133)
138 2uy1_A Cleavage stimulation fa 98.8 8.3E-06 2.8E-10 75.1 26.8 285 85-384 28-380 (493)
139 2vyi_A SGTA protein; chaperone 98.8 2.9E-07 1E-11 67.8 14.2 22 148-169 18-39 (131)
140 3gyz_A Chaperone protein IPGC; 98.8 1.8E-07 6.2E-12 71.3 13.2 98 177-282 36-133 (151)
141 2e2e_A Formate-dependent nitri 98.8 1.9E-07 6.4E-12 73.4 13.8 119 155-282 23-144 (177)
142 3dss_A Geranylgeranyl transfer 98.8 7.7E-06 2.6E-10 70.4 24.5 220 118-351 40-303 (331)
143 3dss_A Geranylgeranyl transfer 98.8 1E-05 3.5E-10 69.6 25.2 216 87-317 46-304 (331)
144 4f3v_A ESX-1 secretion system 98.8 3.9E-07 1.3E-11 76.2 15.9 126 218-352 108-237 (282)
145 2vyi_A SGTA protein; chaperone 98.8 3.7E-07 1.3E-11 67.2 14.4 121 105-228 10-130 (131)
146 1p5q_A FKBP52, FK506-binding p 98.7 3.3E-07 1.1E-11 80.2 15.6 151 121-280 127-292 (336)
147 3gyz_A Chaperone protein IPGC; 98.7 3.2E-07 1.1E-11 69.9 13.2 98 212-317 36-133 (151)
148 2vgx_A Chaperone SYCD; alterna 98.7 1.2E-07 4.3E-12 72.1 10.2 93 215-315 24-116 (148)
149 2vgx_A Chaperone SYCD; alterna 98.7 1.3E-07 4.3E-12 72.1 10.1 97 177-281 21-117 (148)
150 2fbn_A 70 kDa peptidylprolyl i 98.7 3.8E-08 1.3E-12 79.1 7.2 88 178-273 89-176 (198)
151 2fbn_A 70 kDa peptidylprolyl i 98.7 6.5E-08 2.2E-12 77.7 8.0 130 177-314 38-183 (198)
152 2uy1_A Cleavage stimulation fa 98.6 3.9E-05 1.3E-09 70.6 27.3 208 161-386 198-412 (493)
153 3upv_A Heat shock protein STI1 98.6 1.1E-06 3.8E-11 64.5 13.4 93 180-280 7-99 (126)
154 4b4t_Q 26S proteasome regulato 98.6 8.9E-07 3E-11 80.3 15.5 198 82-281 15-244 (434)
155 1elw_A TPR1-domain of HOP; HOP 98.6 3.1E-06 1.1E-10 60.9 15.5 96 108-205 5-100 (118)
156 1elw_A TPR1-domain of HOP; HOP 98.6 2.5E-06 8.7E-11 61.3 15.0 91 147-239 9-99 (118)
157 3upv_A Heat shock protein STI1 98.6 1.5E-06 5.2E-11 63.8 13.8 99 106-206 3-101 (126)
158 2xcb_A PCRH, regulatory protei 98.6 1.2E-06 3.9E-11 66.1 12.4 91 182-280 23-113 (142)
159 2xcb_A PCRH, regulatory protei 98.6 1.4E-06 4.8E-11 65.7 12.5 98 106-205 17-114 (142)
160 2dba_A Smooth muscle cell asso 98.5 4.5E-06 1.5E-10 62.9 15.5 112 105-220 26-141 (148)
161 2kck_A TPR repeat; tetratricop 98.5 1.3E-06 4.6E-11 62.2 11.8 93 181-281 10-105 (112)
162 4b4t_Q 26S proteasome regulato 98.5 5.7E-06 1.9E-10 74.9 18.6 166 149-315 11-202 (434)
163 4gcn_A Protein STI-1; structur 98.5 2.3E-06 8E-11 63.0 13.0 105 108-215 9-119 (127)
164 3sz7_A HSC70 cochaperone (SGT) 98.5 2.6E-06 8.9E-11 65.9 13.7 95 179-281 13-107 (164)
165 4gcn_A Protein STI-1; structur 98.5 1.9E-06 6.6E-11 63.5 12.1 97 213-316 9-111 (127)
166 1elr_A TPR2A-domain of HOP; HO 98.5 1.2E-06 4.1E-11 64.5 10.9 113 106-221 3-121 (131)
167 3sz7_A HSC70 cochaperone (SGT) 98.5 3.2E-06 1.1E-10 65.3 13.8 98 106-205 10-107 (164)
168 2kck_A TPR repeat; tetratricop 98.5 3.3E-06 1.1E-10 60.1 12.8 98 288-387 6-106 (112)
169 3q49_B STIP1 homology and U bo 98.5 3.1E-06 1.1E-10 63.0 13.0 99 105-205 7-105 (137)
170 2dba_A Smooth muscle cell asso 98.5 6.7E-06 2.3E-10 61.9 15.0 96 142-240 28-127 (148)
171 3q49_B STIP1 homology and U bo 98.5 5E-06 1.7E-10 61.9 13.7 96 177-280 9-104 (137)
172 1wao_1 Serine/threonine protei 98.4 8.9E-07 3E-11 81.3 10.5 124 74-201 9-134 (477)
173 1elr_A TPR2A-domain of HOP; HO 98.4 1.7E-06 5.9E-11 63.6 10.3 58 215-279 7-64 (131)
174 1hxi_A PEX5, peroxisome target 98.4 3.5E-06 1.2E-10 61.5 10.9 91 148-240 23-113 (121)
175 1dce_A Protein (RAB geranylger 98.4 1.3E-05 4.5E-10 75.0 16.6 173 87-271 45-244 (567)
176 3ro3_A PINS homolog, G-protein 98.4 2.7E-06 9.1E-11 65.1 10.1 134 253-386 9-157 (164)
177 3ro3_A PINS homolog, G-protein 98.4 3.3E-06 1.1E-10 64.6 10.5 135 107-241 9-158 (164)
178 1hxi_A PEX5, peroxisome target 98.3 4.4E-06 1.5E-10 60.9 10.2 93 257-351 21-113 (121)
179 1dce_A Protein (RAB geranylger 98.3 3.7E-05 1.3E-09 71.9 18.8 176 120-306 42-244 (567)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1E-05 3.4E-10 74.0 14.5 131 142-280 268-413 (457)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.1E-05 3.9E-10 73.6 14.7 145 156-309 248-406 (457)
182 2xev_A YBGF; tetratricopeptide 98.3 2.7E-05 9.3E-10 57.1 14.3 96 110-207 5-106 (129)
183 1wao_1 Serine/threonine protei 98.3 2.7E-06 9.4E-11 78.1 10.1 120 150-278 14-135 (477)
184 2xev_A YBGF; tetratricopeptide 98.3 3.5E-05 1.2E-09 56.4 14.3 96 145-242 5-106 (129)
185 1ihg_A Cyclophilin 40; ppiase 98.3 1.3E-05 4.4E-10 71.0 13.3 96 179-281 225-335 (370)
186 3k9i_A BH0479 protein; putativ 98.3 3.4E-06 1.2E-10 61.1 7.8 86 155-241 3-90 (117)
187 1ihg_A Cyclophilin 40; ppiase 98.2 1.4E-05 4.9E-10 70.7 13.1 121 145-274 226-362 (370)
188 3k9i_A BH0479 protein; putativ 98.2 2.6E-06 9E-11 61.7 6.8 86 190-282 3-90 (117)
189 3rkv_A Putative peptidylprolyl 98.2 2.7E-05 9.3E-10 59.9 12.3 103 214-317 13-126 (162)
190 3rkv_A Putative peptidylprolyl 98.2 2.8E-05 9.5E-10 59.8 12.4 64 212-282 63-126 (162)
191 2if4_A ATFKBP42; FKBP-like, al 98.2 9.8E-06 3.4E-10 70.8 10.4 94 214-315 232-326 (338)
192 2if4_A ATFKBP42; FKBP-like, al 98.1 1.2E-05 4E-10 70.3 9.6 96 179-282 232-328 (338)
193 2hr2_A Hypothetical protein; a 98.1 7.9E-05 2.7E-09 56.3 12.5 62 179-241 59-131 (159)
194 2hr2_A Hypothetical protein; a 98.1 7.8E-05 2.7E-09 56.4 12.1 96 179-281 13-130 (159)
195 1klx_A Cysteine rich protein B 98.1 0.00022 7.6E-09 53.1 14.6 110 227-353 10-127 (138)
196 1klx_A Cysteine rich protein B 98.1 0.00018 6.1E-09 53.6 14.0 83 152-240 35-125 (138)
197 3n71_A Histone lysine methyltr 98.0 2.5E-05 8.5E-10 71.5 9.8 131 151-281 318-463 (490)
198 2kat_A Uncharacterized protein 98.0 4.6E-05 1.6E-09 54.7 9.5 81 88-171 2-82 (115)
199 3n71_A Histone lysine methyltr 98.0 4.8E-05 1.6E-09 69.6 11.4 126 116-241 318-464 (490)
200 2l6j_A TPR repeat-containing p 97.9 1.1E-05 3.8E-10 57.4 5.1 64 177-241 4-67 (111)
201 2kat_A Uncharacterized protein 97.9 0.00011 3.9E-09 52.6 9.7 78 161-240 4-81 (115)
202 2l6j_A TPR repeat-containing p 97.8 0.0001 3.6E-09 52.1 8.7 65 211-282 3-67 (111)
203 1na3_A Designed protein CTPR2; 97.8 0.0003 1E-08 47.6 10.6 63 178-241 10-72 (91)
204 1na3_A Designed protein CTPR2; 97.8 0.00028 9.7E-09 47.7 10.0 64 212-282 9-72 (91)
205 1zu2_A Mitochondrial import re 97.7 0.00016 5.5E-09 54.5 7.8 61 193-262 62-133 (158)
206 1zu2_A Mitochondrial import re 97.7 0.00019 6.5E-09 54.1 8.1 70 83-155 14-93 (158)
207 3ma5_A Tetratricopeptide repea 97.5 0.00039 1.3E-08 48.4 8.0 62 177-239 7-68 (100)
208 3mkq_A Coatomer beta'-subunit; 97.5 0.0031 1E-07 61.9 16.5 98 118-239 610-708 (814)
209 3ma5_A Tetratricopeptide repea 97.5 0.00075 2.6E-08 46.9 8.5 65 210-281 5-69 (100)
210 3mkq_A Coatomer beta'-subunit; 97.4 0.019 6.4E-07 56.3 20.2 152 153-349 610-762 (814)
211 3ly7_A Transcriptional activat 97.2 0.0062 2.1E-07 52.7 12.9 73 286-362 275-347 (372)
212 3ly7_A Transcriptional activat 97.2 0.017 5.9E-07 50.0 15.6 142 105-258 192-348 (372)
213 3qww_A SET and MYND domain-con 97.1 0.0027 9.4E-08 57.0 10.5 85 301-385 311-409 (433)
214 3qwp_A SET and MYND domain-con 97.1 0.0041 1.4E-07 55.9 11.2 99 218-316 293-399 (429)
215 3qww_A SET and MYND domain-con 97.1 0.0023 7.8E-08 57.5 9.1 88 154-241 310-411 (433)
216 2kc7_A BFR218_protein; tetratr 97.0 0.0024 8.1E-08 43.9 7.4 55 186-241 9-64 (99)
217 3qwp_A SET and MYND domain-con 97.0 0.0044 1.5E-07 55.7 10.8 93 148-240 293-399 (429)
218 3u64_A Protein TP_0956; tetrat 96.8 0.18 6.3E-06 41.9 18.3 92 193-294 179-283 (301)
219 3mkq_B Coatomer subunit alpha; 96.8 0.052 1.8E-06 41.5 13.2 44 154-203 17-60 (177)
220 3bee_A Putative YFRE protein; 96.7 0.015 5.2E-07 39.5 9.3 65 211-282 5-72 (93)
221 1wy6_A Hypothetical protein ST 96.7 0.095 3.2E-06 37.8 15.6 138 190-355 20-157 (172)
222 2kc7_A BFR218_protein; tetratr 96.7 0.014 4.9E-07 39.8 9.2 60 218-284 6-66 (99)
223 1pc2_A Mitochondria fission pr 96.6 0.021 7.2E-07 42.5 9.8 87 268-358 13-104 (152)
224 3mkq_B Coatomer subunit alpha; 96.5 0.15 5.1E-06 39.0 14.2 126 83-239 17-142 (177)
225 1wy6_A Hypothetical protein ST 96.5 0.14 4.7E-06 36.9 15.3 141 222-390 17-157 (172)
226 3bee_A Putative YFRE protein; 96.4 0.038 1.3E-06 37.5 9.6 65 287-352 5-72 (93)
227 3u64_A Protein TP_0956; tetrat 96.3 0.033 1.1E-06 46.3 10.1 65 143-207 200-270 (301)
228 2v5f_A Prolyl 4-hydroxylase su 96.2 0.048 1.6E-06 37.8 9.5 67 106-172 4-76 (104)
229 2v5f_A Prolyl 4-hydroxylase su 96.2 0.077 2.6E-06 36.7 10.5 61 180-240 8-74 (104)
230 1pc2_A Mitochondria fission pr 96.2 0.034 1.2E-06 41.4 8.8 66 141-206 31-100 (152)
231 4h7y_A Dual specificity protei 95.8 0.27 9.1E-06 36.3 11.7 114 103-219 9-135 (161)
232 4ady_A RPN2, 26S proteasome re 95.8 1.2 4E-05 43.8 19.6 276 79-368 382-671 (963)
233 4h7y_A Dual specificity protei 95.6 0.22 7.5E-06 36.7 10.5 115 250-367 10-137 (161)
234 1nzn_A CGI-135 protein, fissio 95.1 0.15 5.2E-06 36.4 8.4 64 287-351 34-102 (126)
235 4b4t_P 26S proteasome regulato 94.9 0.88 3E-05 40.9 15.0 262 85-350 30-322 (445)
236 4gns_B Protein CSD3, chitin bi 94.6 0.23 8E-06 47.6 10.7 127 257-384 252-397 (754)
237 3lvg_A Clathrin heavy chain 1; 94.3 8E-06 2.7E-10 72.1 -18.5 121 251-378 197-324 (624)
238 1nzn_A CGI-135 protein, fissio 94.2 0.29 1E-05 35.0 8.0 89 226-323 15-107 (126)
239 4ady_A RPN2, 26S proteasome re 94.0 2 6.8E-05 42.2 15.7 258 117-386 384-657 (963)
240 2ff4_A Probable regulatory pro 93.8 0.24 8E-06 43.8 8.6 74 288-362 171-249 (388)
241 4b4t_P 26S proteasome regulato 93.7 3.7 0.00013 36.9 18.2 193 156-351 30-246 (445)
242 4gns_B Protein CSD3, chitin bi 93.4 0.73 2.5E-05 44.2 11.6 52 221-279 346-397 (754)
243 3lvg_A Clathrin heavy chain 1; 93.4 3.1E-06 1E-10 74.7 -22.7 225 105-371 52-276 (624)
244 4fhn_B Nucleoporin NUP120; pro 92.9 3.4 0.00012 42.2 16.3 146 218-377 818-990 (1139)
245 1v54_E Cytochrome C oxidase po 92.7 1.2 4.1E-05 30.1 8.4 46 306-351 28-73 (109)
246 2ff4_A Probable regulatory pro 92.7 0.61 2.1E-05 41.1 9.5 73 253-326 171-248 (388)
247 3o48_A Mitochondria fission 1 92.0 1.7 5.7E-05 31.3 9.2 67 285-351 37-106 (134)
248 2y69_E Cytochrome C oxidase su 90.7 2.2 7.7E-05 30.6 8.4 59 306-365 71-129 (152)
249 4fhn_B Nucleoporin NUP120; pro 90.4 8 0.00027 39.5 15.9 193 110-315 815-1048(1139)
250 1y8m_A FIS1; mitochondria, unk 89.3 4.9 0.00017 29.3 12.0 72 285-358 36-110 (144)
251 2wpv_A GET4, UPF0363 protein Y 87.8 12 0.0004 31.7 17.5 80 252-350 133-215 (312)
252 3ffl_A Anaphase-promoting comp 87.6 4.2 0.00014 30.5 8.6 58 113-170 26-91 (167)
253 1v54_E Cytochrome C oxidase po 86.8 5.6 0.00019 27.0 9.7 47 195-241 28-74 (109)
254 4b4t_R RPN7, 26S proteasome re 86.5 5 0.00017 35.8 10.3 99 144-242 133-238 (429)
255 4a1g_A Mitotic checkpoint seri 85.9 2.4 8.3E-05 31.4 6.5 55 124-178 82-137 (152)
256 3ffl_A Anaphase-promoting comp 85.4 9.9 0.00034 28.5 9.8 98 144-241 22-151 (167)
257 3lpz_A GET4 (YOR164C homolog); 84.9 17 0.00059 30.9 20.2 165 111-315 39-214 (336)
258 3esl_A Checkpoint serine/threo 84.3 3.7 0.00013 31.9 7.1 88 87-177 60-150 (202)
259 3lpz_A GET4 (YOR164C homolog); 84.1 19 0.00064 30.7 19.0 173 145-351 38-215 (336)
260 3txn_A 26S proteasome regulato 84.1 21 0.00072 31.3 20.7 233 110-349 22-281 (394)
261 2wvi_A Mitotic checkpoint seri 83.8 3.5 0.00012 31.0 6.6 71 105-178 61-132 (164)
262 4b4t_R RPN7, 26S proteasome re 83.4 7.4 0.00025 34.7 9.9 101 178-281 132-236 (429)
263 2y69_E Cytochrome C oxidase su 83.2 11 0.00037 27.2 9.7 46 196-241 72-117 (152)
264 3o48_A Mitochondria fission 1 82.8 11 0.00038 27.1 10.1 47 125-171 61-107 (134)
265 2p58_C Putative type III secre 82.7 8.9 0.00031 25.9 8.1 76 87-172 23-99 (116)
266 2uwj_G Type III export protein 82.4 8.6 0.00029 25.9 7.2 76 87-172 22-98 (115)
267 2p58_C Putative type III secre 82.2 9.4 0.00032 25.8 7.9 78 267-352 21-98 (116)
268 2uwj_G Type III export protein 81.6 9.3 0.00032 25.8 7.1 77 268-352 21-97 (115)
269 3esl_A Checkpoint serine/threo 79.1 21 0.0007 27.8 9.8 58 301-358 92-150 (202)
270 1zbp_A Hypothetical protein VP 79.0 6.1 0.00021 32.4 6.9 55 221-282 6-60 (273)
271 4aez_C MAD3, mitotic spindle c 78.2 4.9 0.00017 31.9 6.0 70 105-177 115-185 (223)
272 1wdy_A 2-5A-dependent ribonucl 78.0 9 0.00031 31.3 8.2 123 260-394 152-282 (285)
273 1y8m_A FIS1; mitochondria, unk 75.7 21 0.0007 26.0 11.9 23 183-205 83-105 (144)
274 1k1a_A B-cell lymphoma 3-encod 68.0 42 0.0014 26.3 9.8 20 153-172 17-36 (241)
275 1zbp_A Hypothetical protein VP 67.8 49 0.0017 27.1 14.2 112 81-206 7-129 (273)
276 2wpv_A GET4, UPF0363 protein Y 65.6 61 0.0021 27.3 19.7 165 111-315 37-215 (312)
277 2zu6_B Programmed cell death p 65.3 41 0.0014 28.3 9.1 67 255-322 168-236 (307)
278 3eiq_C Programmed cell death p 64.5 67 0.0023 27.7 10.4 66 325-391 219-286 (358)
279 2d2s_A Exocyst complex compone 63.9 55 0.0019 26.2 9.7 89 259-350 24-118 (235)
280 1k1a_A B-cell lymphoma 3-encod 63.3 32 0.0011 27.0 8.2 85 114-202 13-101 (241)
281 3txn_A 26S proteasome regulato 63.2 77 0.0026 27.7 22.8 237 143-384 20-281 (394)
282 3kea_A K1L; tropism, ANK repea 62.3 8.9 0.0003 31.7 4.7 229 84-347 9-242 (285)
283 3t8k_A Uncharacterized protein 62.1 45 0.0015 25.3 8.4 160 222-391 13-184 (186)
284 1wdy_A 2-5A-dependent ribonucl 60.9 26 0.00087 28.4 7.3 216 147-393 7-248 (285)
285 3eiq_C Programmed cell death p 60.8 81 0.0028 27.1 13.0 69 255-324 219-289 (358)
286 3kea_A K1L; tropism, ANK repea 60.2 23 0.00079 29.2 6.9 229 120-382 9-242 (285)
287 2ion_A PDCD4, programmed cell 60.1 37 0.0013 25.0 7.1 67 255-322 11-79 (152)
288 2d2s_A Exocyst complex compone 60.1 65 0.0022 25.8 9.2 89 113-204 24-118 (235)
289 4a1g_A Mitotic checkpoint seri 59.4 50 0.0017 24.3 9.3 51 306-356 83-134 (152)
290 2nsz_A Programmed cell death p 58.8 46 0.0016 23.7 8.5 66 255-321 9-76 (129)
291 3eu9_A Huntingtin-interacting 57.7 15 0.00052 28.9 5.2 11 118-128 17-27 (240)
292 3jxi_A Vanilloid receptor-rela 55.8 9.8 0.00034 30.7 3.8 56 114-169 9-73 (260)
293 3ljn_A Hypothetical protein; a 53.8 70 0.0024 27.2 9.1 218 106-348 17-266 (364)
294 4g8k_A 2-5A-dependent ribonucl 53.2 1E+02 0.0034 25.8 11.2 103 275-393 221-329 (337)
295 4aez_C MAD3, mitotic spindle c 52.4 34 0.0012 27.1 6.0 53 305-357 131-184 (223)
296 1qsa_A Protein (soluble lytic 50.9 1.6E+02 0.0055 27.6 26.7 251 111-386 76-347 (618)
297 3hra_A Ankyrin repeat family p 50.4 34 0.0012 25.9 6.0 14 118-131 13-26 (201)
298 1bpo_A Protein (clathrin); cla 49.5 1.5E+02 0.005 26.7 10.1 140 86-239 344-483 (494)
299 3jxi_A Vanilloid receptor-rela 48.8 15 0.00052 29.6 3.8 22 365-386 229-250 (260)
300 4gq2_M Nucleoporin NUP120; bet 48.7 1.7E+02 0.0059 29.1 11.9 48 325-372 899-950 (950)
301 2zu6_B Programmed cell death p 48.5 1.2E+02 0.0041 25.4 10.8 64 326-390 169-234 (307)
302 3twr_A Tankyrase-2; ankyrin re 48.4 62 0.0021 23.5 7.0 117 262-393 14-136 (165)
303 1ug3_A EIF4GI, eukaryotic prot 48.3 1.1E+02 0.0038 26.0 9.3 25 180-204 14-38 (339)
304 4ets_A Ferric uptake regulatio 47.8 42 0.0015 25.0 5.8 44 148-191 38-83 (162)
305 3kae_A CDC27, possible protein 47.5 90 0.0031 23.6 9.6 30 177-206 114-143 (242)
306 3eyy_A Putative iron uptake re 47.2 78 0.0027 22.9 7.3 20 158-177 33-52 (145)
307 3hra_A Ankyrin repeat family p 46.2 38 0.0013 25.6 5.7 13 153-165 13-25 (201)
308 4b4t_S RPN3, 26S proteasome re 44.1 1.9E+02 0.0064 26.4 11.4 66 107-172 231-300 (523)
309 2ion_A PDCD4, programmed cell 43.9 93 0.0032 22.8 8.0 64 215-285 12-77 (152)
310 2xig_A Ferric uptake regulatio 43.3 94 0.0032 22.6 8.1 46 133-179 18-63 (150)
311 3bge_A Predicted ATPase; struc 42.9 1.1E+02 0.0039 23.5 7.9 56 264-319 18-78 (201)
312 2fe3_A Peroxide operon regulat 42.6 94 0.0032 22.5 8.7 46 133-179 13-58 (145)
313 3kae_A CDC27, possible protein 42.2 1.1E+02 0.0038 23.2 7.6 24 360-383 116-139 (242)
314 2ijq_A Hypothetical protein; s 41.8 1.1E+02 0.0036 22.8 8.2 50 156-205 46-103 (161)
315 2r9g_A AAA ATPase, central reg 41.1 1.2E+02 0.0042 23.4 9.0 56 265-321 26-86 (204)
316 1mzb_A Ferric uptake regulatio 40.7 96 0.0033 22.1 7.7 17 157-173 33-49 (136)
317 2w57_A Ferric uptake regulatio 40.4 1E+02 0.0036 22.4 7.4 15 158-172 33-47 (150)
318 2nsz_A Programmed cell death p 39.4 1E+02 0.0034 21.9 9.4 64 215-285 10-75 (129)
319 2wvi_A Mitotic checkpoint seri 39.2 1.2E+02 0.0041 22.7 9.9 56 305-360 77-133 (164)
320 3mwm_A ZUR, putative metal upt 38.4 44 0.0015 24.0 4.5 46 113-158 19-64 (139)
321 2o03_A Probable zinc uptake re 38.2 63 0.0021 22.9 5.3 46 113-158 16-61 (131)
322 3eu9_A Huntingtin-interacting 37.8 64 0.0022 25.1 5.9 17 113-129 45-61 (240)
323 2ijq_A Hypothetical protein; s 36.6 1.3E+02 0.0044 22.4 7.9 51 266-316 45-103 (161)
324 3ctd_A Putative ATPase, AAA fa 36.2 1.5E+02 0.0053 23.1 8.3 66 256-321 35-108 (213)
325 3eyy_A Putative iron uptake re 35.2 1.2E+02 0.0042 21.8 6.5 48 111-159 22-69 (145)
326 2fe3_A Peroxide operon regulat 34.7 1.3E+02 0.0044 21.7 6.8 50 110-159 24-73 (145)
327 3ph0_C ASCG; type III secretio 34.7 71 0.0024 18.8 3.9 14 87-100 22-35 (61)
328 3pvs_A Replication-associated 34.4 2.5E+02 0.0085 25.0 14.2 38 265-302 267-304 (447)
329 2b7e_A PRE-mRNA processing pro 34.1 42 0.0014 20.1 3.0 29 88-117 3-31 (59)
330 2rfa_A Transient receptor pote 34.0 1.6E+02 0.0055 22.7 8.3 84 298-386 128-222 (232)
331 1mzb_A Ferric uptake regulatio 33.0 81 0.0028 22.5 5.2 49 111-159 21-70 (136)
332 1ug3_A EIF4GI, eukaryotic prot 32.9 60 0.0021 27.7 5.2 95 256-351 14-113 (339)
333 4b4t_S RPN3, 26S proteasome re 32.4 2.9E+02 0.01 25.2 12.1 66 212-282 231-299 (523)
334 2xig_A Ferric uptake regulatio 32.1 1.5E+02 0.005 21.6 7.4 51 109-159 28-78 (150)
335 4ets_A Ferric uptake regulatio 32.1 1.5E+02 0.0053 21.9 7.6 58 170-228 26-85 (162)
336 3ljn_A Hypothetical protein; a 31.7 2E+02 0.0067 24.3 8.5 182 114-313 57-266 (364)
337 2pnn_A Transient receptor pote 31.3 47 0.0016 26.8 4.2 55 114-168 17-80 (273)
338 4gq2_M Nucleoporin NUP120; bet 30.5 2.6E+02 0.009 27.8 9.9 88 294-387 816-926 (950)
339 3aji_A 26S proteasome non-ATPa 30.4 1.8E+02 0.0063 22.2 8.5 19 149-167 10-28 (231)
340 3pvs_A Replication-associated 29.4 3E+02 0.01 24.4 13.9 19 191-209 269-287 (447)
341 2keb_A DNA polymerase subunit 28.8 1.3E+02 0.0045 20.1 6.3 31 272-302 28-58 (101)
342 3mwm_A ZUR, putative metal upt 28.5 70 0.0024 23.0 4.2 47 257-303 17-63 (139)
343 4fke_A Aminopeptidase N; zinc 28.5 4.4E+02 0.015 26.0 18.1 89 147-240 691-786 (909)
344 3aji_A 26S proteasome non-ATPa 28.2 1.2E+02 0.0041 23.4 6.0 20 114-133 10-29 (231)
345 3f3f_C Nucleoporin NUP85; stru 28.2 1.5E+02 0.005 27.4 6.9 90 106-197 478-569 (570)
346 2yru_A Steroid receptor RNA ac 28.0 1E+02 0.0034 21.6 4.6 17 153-169 72-88 (118)
347 2keb_A DNA polymerase subunit 28.0 1.4E+02 0.0047 20.0 6.8 31 126-156 28-58 (101)
348 1wgl_A TOLL-interacting protei 27.6 84 0.0029 18.7 3.6 24 370-393 35-58 (59)
349 2cos_A Serine/threonine protei 27.6 71 0.0024 18.6 3.1 37 344-385 11-49 (54)
350 3ltm_A Alpha-REP4; protein eng 27.4 2E+02 0.0069 21.8 18.8 17 141-157 32-48 (211)
351 2o03_A Probable zinc uptake re 27.4 1.6E+02 0.0053 20.7 5.8 30 149-178 17-46 (131)
352 3b7b_A Euchromatic histone-lys 27.3 77 0.0026 24.7 4.7 20 367-386 216-235 (237)
353 4fke_A Aminopeptidase N; zinc 27.1 4.7E+02 0.016 25.9 17.6 158 181-351 690-859 (909)
354 2etb_A Transient receptor pote 26.9 2.3E+02 0.0078 22.2 7.9 56 114-170 6-71 (256)
355 3bge_A Predicted ATPase; struc 26.5 2.2E+02 0.0076 22.0 9.7 21 155-175 20-40 (201)
356 2w57_A Ferric uptake regulatio 26.0 92 0.0031 22.7 4.5 50 111-160 20-70 (150)
357 3lxu_X Tripeptidyl-peptidase 2 25.8 4.3E+02 0.015 27.5 10.3 85 304-391 1265-1349(1354)
358 2yru_A Steroid receptor RNA ac 25.7 1E+02 0.0035 21.5 4.4 41 276-316 49-89 (118)
359 3f3f_C Nucleoporin NUP85; stru 25.7 2.5E+02 0.0086 25.9 7.9 75 156-232 495-569 (570)
360 1wty_A Hypothetical protein TT 25.2 1.5E+02 0.005 20.5 5.2 78 267-351 2-80 (119)
361 2f6m_A Suppressor protein STP2 25.0 1.2E+02 0.0042 18.5 4.0 25 148-172 8-32 (65)
362 2r9g_A AAA ATPase, central reg 25.0 2.4E+02 0.0083 21.8 11.1 20 155-175 27-46 (204)
363 2rg8_A Programmed cell death p 24.7 1.1E+02 0.0037 22.9 4.7 22 217-238 15-36 (165)
364 3t8k_A Uncharacterized protein 23.5 2.3E+02 0.008 21.1 10.6 134 218-354 41-182 (186)
365 1bd8_A P19INK4D CDK4/6 inhibit 23.3 99 0.0034 22.0 4.3 11 190-200 12-22 (156)
366 2fu4_A Ferric uptake regulatio 22.8 1.5E+02 0.005 18.6 7.3 14 159-172 34-47 (83)
367 3ygs_P Procaspase 9; apoptosis 22.4 1.7E+02 0.0058 19.4 4.9 37 267-307 51-87 (97)
368 3qil_A Clathrin heavy chain 1; 22.2 64 0.0022 22.6 2.7 47 184-233 39-85 (125)
369 1qsa_A Protein (soluble lytic 22.2 4.9E+02 0.017 24.3 34.0 177 192-381 229-436 (618)
370 1bpo_A Protein (clathrin); cla 22.0 4.4E+02 0.015 23.7 10.8 112 120-236 342-453 (494)
371 3ctd_A Putative ATPase, AAA fa 21.8 2.9E+02 0.0099 21.6 10.0 20 156-175 49-68 (213)
372 2pnn_A Transient receptor pote 21.6 1.3E+02 0.0044 24.1 5.1 55 149-203 17-80 (273)
373 3t5v_B Nuclear mRNA export pro 20.5 2.1E+02 0.007 25.6 6.3 63 255-317 178-249 (455)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.4e-33 Score=258.29 Aligned_cols=206 Identities=16% Similarity=0.211 Sum_probs=178.5
Q ss_pred hHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC---------hH
Q 041816 160 HGFVVLGRILRSCFTPD-AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH---------TI 229 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---------~~ 229 (396)
.+..+.+++.+.+.... ...++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. .+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34455566666655443 345788889999999999999999999998999999999999998887654 67
Q ss_pred HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 041816 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309 (396)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 309 (396)
+|.++|++|...+ +.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 88 ~A~~lf~~M~~~G------~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 88 RGFDIFKQMIVDK------VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 8999999999998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 041816 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371 (396)
Q Consensus 310 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 371 (396)
+|++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999998764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.1e-33 Score=255.58 Aligned_cols=195 Identities=16% Similarity=0.222 Sum_probs=112.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (396)
.++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+...++ .
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------------------------~ 81 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------------------------S 81 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------------------------S
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------------------------h
Confidence 35555555555555555555555555555555555555555555544432110 0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
+.+.+++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.+ +.||..+|+.+|.+|++.|+
T Consensus 82 ~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g------~~Pd~~tyn~lI~~~~~~g~ 155 (501)
T 4g26_A 82 PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG------IQPRLRSYGPALFGFCRKGD 155 (501)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHTTC
T ss_pred hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCccceehHHHHHHHHCCC
Confidence 112245556666666666666666666666666666666666666666666555 55666666666666666666
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041816 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 335 (396)
+++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 156 ~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666666666666666655554
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=5.9e-29 Score=237.15 Aligned_cols=299 Identities=11% Similarity=0.016 Sum_probs=271.9
Q ss_pred ccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 041816 75 KSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (396)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 154 (396)
...+..+...|++++|+++|+.+.+. +++..+|+.++.++.+.|++++|+++|+++.+.+ +.+..++..++.++.+
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHE 351 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHH
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHH
Confidence 34477888999999999999999876 3789999999999999999999999999998765 3478889999999999
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 041816 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++
T Consensus 352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999765 4478999999999999999999999999998864 44788999999999999999999999
Q ss_pred HHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|+.++..|.+.|++++|..+|+++
T Consensus 430 ~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 430 YTTAARLF-------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHTT-------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhC-------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999875 568899999999999999999999999999886544 7899999999999999999999999999
Q ss_pred HHC----CCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 315 MDQ----GVQPD--VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 315 ~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.++|+++.+..
T Consensus 502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 875 66787 7899999999999999999999999999863 4589999999999999999999999999998753
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.4e-28 Score=232.96 Aligned_cols=294 Identities=11% Similarity=-0.003 Sum_probs=261.8
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHH--------------------------------------HHHHHhcC
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLL--------------------------------------FGCLAKTK 121 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~~~~ 121 (396)
.+...|++++|+++|+++.+.++. +...+..+ +..|.+.|
T Consensus 209 ~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (597)
T 2xpi_A 209 VYTNLSNFDRAKECYKEALMVDAK--CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCch--hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence 355678999999999999987764 44444433 44566789
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041816 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201 (396)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 201 (396)
++++|+++|+++.+. +++..+++.++..|.+.|++++|.++|+++.+.+.. +..++..++.+|.+.|++++|..+++
T Consensus 287 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 287 ELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp HHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998765 579999999999999999999999999999987644 78889999999999999999999999
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 202 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 364 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 364 DLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 998764 5578999999999999999999999999998864 56788999999999999999999999999988
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC
Q 041816 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR----GVNPN 357 (396)
Q Consensus 282 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~ 357 (396)
.+.. +..+|+.++.+|.+.|++++|..+|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+
T Consensus 436 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 436 LFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp TTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred hCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 7543 88999999999999999999999999999764 447889999999999999999999999999876 66787
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 358 --TSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 358 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
..+|..++.+|.+.|++++|.++|+++.+.+
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999998765
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=6.7e-25 Score=197.89 Aligned_cols=299 Identities=15% Similarity=0.079 Sum_probs=252.0
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 77 SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
++..+...|++++|+..|+++.+..| .+...|..+..++.+.|++++|++.|+++.+.. +.+...+..+...+...|
T Consensus 73 lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 149 (388)
T 1w3b_A 73 LGNVYKERGQLQEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALG 149 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcc
Confidence 34456677889999999999888654 467788888889999999999999998888754 224456677778888889
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 236 (396)
++++|.+.|+++.+..+. +..+|..+...+...|++++|...|+++.+.+ +.+...|..+...+...|++++|...++
T Consensus 150 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998887533 67888889999999999999999999988875 3467788888999999999999999999
Q ss_pred HHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
+..... +.+..++..+..+|.+.|++++|.+.|+++.+.+.. +..+|..+...+.+.|++++|...++++.+
T Consensus 228 ~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 228 RALSLS-------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhhC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888764 456788999999999999999999999999887544 677899999999999999999999999987
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041816 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392 (396)
Q Consensus 317 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 392 (396)
.. +.+..++..+...+.+.|++++|...++++.+. .+.+..++..+...|.+.|++++|.+.|+++.+. .|+
T Consensus 300 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~ 371 (388)
T 1w3b_A 300 LC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPT 371 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTT
T ss_pred hC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC
Confidence 63 567889999999999999999999999999886 3456889999999999999999999999999873 454
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=7.1e-24 Score=191.16 Aligned_cols=292 Identities=13% Similarity=0.068 Sum_probs=259.5
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
+...|++++|...++..++..+ .+...|..+..++.+.|++++|++.|+++.+.. +.+..+|..+..++.+.|++++
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHH
Confidence 4456789999999999988765 588899999999999999999999999998754 2356679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
|.+.|+++++..+. +...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++..
T Consensus 120 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 120 AVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999987643 56778889999999999999999999998874 44688999999999999999999999999998
Q ss_pred cCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 041816 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (396)
.. +.+...|..+...+...|++++|...|++....... +..++..+...+...|++++|...++++.+.+ +
T Consensus 198 ~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 268 (388)
T 1w3b_A 198 LD-------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-P 268 (388)
T ss_dssp HC-------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-S
T ss_pred cC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Confidence 75 566788999999999999999999999999876543 67889999999999999999999999999864 3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 321 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.+..+|..+..++.+.|++++|.+.|+++.+. .+.+..++..+...+...|++++|.+.++++.+.
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 35778999999999999999999999999987 4668899999999999999999999999999874
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=5.5e-23 Score=188.97 Aligned_cols=296 Identities=11% Similarity=0.064 Sum_probs=253.9
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
..+...|++++|+.+|+.+++..+ .+...|..+..++...|++++|++.|+++.+.+ +.+...+..+..++.+.|++
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 110 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKL 110 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 345567899999999999998755 478999999999999999999999999998865 34678899999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDA---VAFTSL------------IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 223 (396)
++|...|+++.+.... +. ..+..+ ...+...|++++|...|+++.+.. +.+..++..+..+|.
T Consensus 111 ~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 111 DEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFI 188 (450)
T ss_dssp HHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 9999999999987532 34 555555 444889999999999999998875 457889999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHH---------
Q 041816 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL--------- 294 (396)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l--------- 294 (396)
+.|++++|...|+++.... +.+..+|..+..+|...|++++|...|+++...... +...+..+
T Consensus 189 ~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLK-------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHH-------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHH
Confidence 9999999999999998864 567899999999999999999999999999876433 44445444
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041816 295 ---IHGFCYANDWNEANCLLIEMMDQGVQPD-----VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366 (396)
Q Consensus 295 ---i~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 366 (396)
...+...|++++|...++++.+. .|+ ...+..+..++.+.|++++|...++++.+. .+.+...|..+..
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHH
Confidence 78899999999999999999975 344 447888999999999999999999999875 2447899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041816 367 GFCLTGRVNHAKELFVSMESMGCKHT 392 (396)
Q Consensus 367 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 392 (396)
+|...|++++|.+.|+++.+. .|+
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~--~p~ 361 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEH--NEN 361 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--SSS
T ss_pred HHHHhcCHHHHHHHHHHHHHh--Ccc
Confidence 999999999999999999874 454
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1.5e-20 Score=167.00 Aligned_cols=295 Identities=10% Similarity=0.050 Sum_probs=249.5
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
..+...|++++|+..|+.+++..+. +...|..+..++...|++++|+..++++.+.. +.+...+..+...+...|++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCCh
Confidence 3455678999999999999997664 78899999999999999999999999998764 23678899999999999999
Q ss_pred hhHHHHHHHHHhcCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 041816 159 SHGFVVLGRILRSCFT--PDAVAFTSL------------IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 224 (396)
++|...++++.+.... .+...+..+ ...+...|++++|..+++++.+.. +.+..++..+...+..
T Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 166 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIK 166 (359)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 9999999999987530 245555544 578899999999999999998875 4578889999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHH------------
Q 041816 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN------------ 292 (396)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~------------ 292 (396)
.|++++|...++++.... +.+..++..+...+...|++++|.+.|+...+.... +...+.
T Consensus 167 ~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 167 EGEPRKAISDLKAASKLK-------SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp TTCHHHHHHHHHHHHTTC-------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHH
Confidence 999999999999999875 667889999999999999999999999999876433 333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041816 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPD-V----VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367 (396)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 367 (396)
.+...+...|++++|...++++.+.. |+ . ..+..+..++...|++++|...+++..+. .+.+...+..+...
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHH
Confidence 23667889999999999999998754 33 2 23556788999999999999999999986 34478999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 041816 368 FCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 368 ~~~~g~~~~A~~~~~~m~~~g 388 (396)
+...|++++|.+.|++..+..
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999753
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.5e-21 Score=177.93 Aligned_cols=282 Identities=13% Similarity=0.078 Sum_probs=233.0
Q ss_pred HHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 041816 90 AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169 (396)
Q Consensus 90 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 169 (396)
+...|..+....+ .++..|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...+++++
T Consensus 11 ~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 11 VDLGTENLYFQSM--ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ------------C--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344455544433 578899999999999999999999999998754 3478899999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH---HHHHHH------------HHHHHhcCChHHHHHH
Q 041816 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV---ITYSTL------------INGLCRTGHTIVALNL 234 (396)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~ 234 (396)
+.++. +..++..+..+|.+.|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|+..
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88643 68899999999999999999999999999874 2344 566555 4448999999999999
Q ss_pred HHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
++++.... +.+..++..++.+|.+.|++++|.++|+++.+.... +..+|..+...|...|++++|...++++
T Consensus 166 ~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 166 LDKILEVC-------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhC-------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999875 567889999999999999999999999999876433 7889999999999999999999999999
Q ss_pred HHCCCCCCHhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHH
Q 041816 315 MDQGVQPDVVTFNVI------------MDELCKNGKMDEASRLLELMILRGVNPN-----TSTFSTLMDGFCLTGRVNHA 377 (396)
Q Consensus 315 ~~~~~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A 377 (396)
.+.. +.+...+..+ ...|.+.|++++|...|+++.+. .|+ ...+..+...+.+.|++++|
T Consensus 238 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 238 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 8753 2234444444 78899999999999999999985 444 45788899999999999999
Q ss_pred HHHHHHHHhC
Q 041816 378 KELFVSMESM 387 (396)
Q Consensus 378 ~~~~~~m~~~ 387 (396)
...++++.+.
T Consensus 315 ~~~~~~a~~~ 324 (450)
T 2y4t_A 315 IRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 10
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=2.9e-21 Score=172.60 Aligned_cols=292 Identities=12% Similarity=0.009 Sum_probs=235.2
Q ss_pred CccccCChhHHHH-HHHHHHhcCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 80 GDITAITPNEAFC-IFDYMLNMRPSPP--PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 80 ~~~~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
.+...|++++|++ .|++.....+..| +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 4556688999998 9998776655433 35678889999999999999999999999875 347788999999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHH---------------HHHH
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST---------------LING 221 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~---------------ll~~ 221 (396)
++++|...++++++..+ .+..++..+...|...|++++|...++++.+.... +...+.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 99999999999998764 37889999999999999999999999999987522 2222221 2334
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcccccC--CHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041816 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKP--NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299 (396)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 299 (396)
+...|++++|...++++.... +. +..++..+...|.+.|++++|...|+++...... +..+|..+...+.
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~ 262 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLD-------PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLA 262 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HhhcccHHHHHHHHHHHHHhC-------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHH
Confidence 448999999999999999875 33 5789999999999999999999999999876433 6789999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHH
Q 041816 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN----------PNTSTFSTLMDGFC 369 (396)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~----------p~~~~~~~li~~~~ 369 (396)
..|++++|...++++.+.. +.+...+..+..+|.+.|++++|...|+++.+.... ....+|..+..+|.
T Consensus 263 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 263 NGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 9999999999999998753 345788999999999999999999999998874111 12689999999999
Q ss_pred hcCCHHHHHHHHHH
Q 041816 370 LTGRVNHAKELFVS 383 (396)
Q Consensus 370 ~~g~~~~A~~~~~~ 383 (396)
..|++++|..++++
T Consensus 342 ~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 342 MLGQSDAYGAADAR 355 (368)
T ss_dssp HHTCGGGHHHHHTT
T ss_pred HhCChHhHHHhHHH
Confidence 99999999988764
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=4.5e-20 Score=162.08 Aligned_cols=280 Identities=13% Similarity=0.051 Sum_probs=233.2
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-Chhh
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG-RVSH 160 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~ 160 (396)
...|++++|+++|+.+.+..+. +...+..++.++...|++++|..+++++.+.. +.+...+..+...+...| ++++
T Consensus 33 ~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 33 YYNCDFKMCYKLTSVVMEKDPF--HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT--CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHH
Confidence 3457899999999999987664 66778888888999999999999999998754 336778888999999999 9999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
|...+++..+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++..
T Consensus 110 A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 110 ARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999987533 67788999999999999999999999998875 33566777899999999999999999999998
Q ss_pred cCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCC--------CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN--------INPDVVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
.. +.+...+..+...+...|++++|...+++..+.. ......++..+...+...|++++|...++
T Consensus 188 ~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 188 IA-------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp TC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hC-------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 75 5678899999999999999999999999987532 12345788999999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHH
Q 041816 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF-CLTGRVN 375 (396)
Q Consensus 313 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~ 375 (396)
++.+.. +.+...+..+..+|.+.|++++|.+.++++.+. .+.+...+..+..++ ...|+.+
T Consensus 261 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 261 QALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc-CCCchHHHHHHHHHHHHHhCchh
Confidence 998764 345678889999999999999999999998875 234677788888777 4556543
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=6.1e-20 Score=161.23 Aligned_cols=271 Identities=12% Similarity=0.032 Sum_probs=236.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
.++..+..+...+...|++++|+++++++.+.. +.+...+..++.++...|++++|..+++++.+.... +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 466678888899999999999999999998764 335667777888999999999999999999987543 678899999
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHH
Q 041816 185 KGLCAES-RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263 (396)
Q Consensus 185 ~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (396)
..+...| ++++|...|++..+.. +.+...|..+...+...|++++|...++++.... +.+...+..+...|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-------KGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-------TTCSHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------cccHHHHHHHHHHH
Confidence 9999999 9999999999999875 4467789999999999999999999999999875 45667888899999
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHhhHHHHHHHHHh
Q 041816 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG--------VQPDVVTFNVIMDELCK 335 (396)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~ 335 (396)
...|++++|.+.+++..+.... +...+..+...+...|++++|...++++.+.. .+.+...+..+..+|..
T Consensus 170 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 9999999999999999887544 77889999999999999999999999988631 13345788999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.|++++|...++++.+.. +.+...+..+...+...|++++|.+.|++..+.
T Consensus 249 ~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred hcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999863 447788999999999999999999999998764
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.1e-20 Score=174.50 Aligned_cols=295 Identities=8% Similarity=-0.005 Sum_probs=249.2
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 157 (396)
|..+...|++++|+..|++++... |+...|..+..++.+.|++++|++.++++.+.+ +.+...|..+..++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhh
Confidence 445667789999999999999976 478899999999999999999999999998865 3467789999999999999
Q ss_pred hhhHHHHHHHHHhcCCCC--------------------------------------------------------------
Q 041816 158 VSHGFVVLGRILRSCFTP-------------------------------------------------------------- 175 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~-------------------------------------------------------------- 175 (396)
+++|...|+++.+.+...
T Consensus 89 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 89 FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 999999999998765311
Q ss_pred ----------------CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----cCC--------CccHHHHHHHHHHHH
Q 041816 176 ----------------DAVAFTSLIKGLCA---ESRIMEAAALFTKLKA-----FGC--------KPNVITYSTLINGLC 223 (396)
Q Consensus 176 ----------------~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~ll~~~~ 223 (396)
+...+......+.. .|++++|..+|+++.+ ... +.+..++..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 13333334444443 8999999999999987 311 234667888999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 041816 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303 (396)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 303 (396)
..|++++|...++++.... |+...+..+..++...|++++|.+.++++...... +...+..+...+...|+
T Consensus 249 ~~~~~~~A~~~~~~~l~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELF--------PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHhhC--------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCC
Confidence 9999999999999999865 33888999999999999999999999999887544 67789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383 (396)
Q Consensus 304 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 383 (396)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999864 335678899999999999999999999999886 344678899999999999999999999999
Q ss_pred HHhC
Q 041816 384 MESM 387 (396)
Q Consensus 384 m~~~ 387 (396)
+.+.
T Consensus 398 a~~~ 401 (514)
T 2gw1_A 398 AIEL 401 (514)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8763
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=9.7e-20 Score=170.03 Aligned_cols=232 Identities=13% Similarity=-0.016 Sum_probs=136.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 041816 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223 (396)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 223 (396)
++..+...+...|++++|...++++.+.... ...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 3344444445555555555555555444322 4445555555555555555555555554432 223445555555666
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 041816 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303 (396)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 303 (396)
..|++++|...++++.... +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|+
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-------PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKND 387 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-------SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHhC-------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCC
Confidence 6666666666666665543 334556666666666666677776666666554322 45566666677777777
Q ss_pred HHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 041816 304 WNEANCLLIEMMDQGV-QPD----VVTFNVIMDELCK---NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375 (396)
Q Consensus 304 ~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 375 (396)
+++|...++++.+... .++ ...+..+...+.. .|++++|...++++.+. .+.+...+..+...|...|+++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-DPRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHH
Confidence 7777777776664311 111 2266667777777 77777777777777664 2335666777777777777777
Q ss_pred HHHHHHHHHHhC
Q 041816 376 HAKELFVSMESM 387 (396)
Q Consensus 376 ~A~~~~~~m~~~ 387 (396)
+|.+.|++..+.
T Consensus 467 ~A~~~~~~a~~~ 478 (514)
T 2gw1_A 467 EAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777777654
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.87 E-value=5.1e-20 Score=164.46 Aligned_cols=265 Identities=12% Similarity=-0.030 Sum_probs=221.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
+...|..+...+.+.|++++|+++|+++.+.. +.+..+|..+..++...|++++|+..|+++++..+ .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 45668899999999999999999999998865 34788999999999999999999999999998763 36889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcc-H----------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccC--C
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPN-V----------ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP--N 252 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~-~----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~ 252 (396)
+|...|++++|...|+++.+.. |+ . ..+..+...+...|++++|...++++.... +. +
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~ 212 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-------GDMID 212 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-------CSSCC
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-------cCccC
Confidence 9999999999999999998763 22 2 223445888999999999999999999875 33 6
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 332 (396)
..++..+...|...|++++|.+.|++..+.... +..+|..+..+|...|++++|...++++.+.. +.+..++..+..+
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 290 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGIS 290 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence 889999999999999999999999999886543 78899999999999999999999999999863 3357889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 333 LCKNGKMDEASRLLELMILRGV---N--------PNTSTFSTLMDGFCLTGRVNHAKELFVS 383 (396)
Q Consensus 333 ~~~~g~~~~A~~~~~~m~~~g~---~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 383 (396)
|...|++++|...|+++.+... . .+...|..+..++...|+.+.+.++.++
T Consensus 291 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999999987410 0 1367899999999999999998887665
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=3.7e-19 Score=167.17 Aligned_cols=297 Identities=13% Similarity=0.104 Sum_probs=239.5
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 041816 76 SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (396)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 155 (396)
..+..+...|++++|+..|++++...| .++..|..+..++.+.|++++|++.++++.+.+ +.+..++..+..++...
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc
Confidence 345567778999999999999999876 488999999999999999999999999998865 34678899999999999
Q ss_pred CChhhHHHHHHHHHhcCCCC-------------------------------------CHH--------------------
Q 041816 156 GRVSHGFVVLGRILRSCFTP-------------------------------------DAV-------------------- 178 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~-------------------------------------~~~-------------------- 178 (396)
|++++|...|+.+ .....+ +..
T Consensus 107 g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 107 GNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp TCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred CCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 9999999999633 221111 000
Q ss_pred ----------HHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCcc-------HHHHHHHHHHHHhcCChHHHHH
Q 041816 179 ----------AFTSLIKGLCA--------ESRIMEAAALFTKLKAFGCKPN-------VITYSTLINGLCRTGHTIVALN 233 (396)
Q Consensus 179 ----------~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~g~~~~-------~~~~~~ll~~~~~~g~~~~a~~ 233 (396)
....+...+.. .|++++|..+++++.+... .+ ..++..+...+...|++++|..
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 11122222211 2478899999999987642 23 2356777788899999999999
Q ss_pred HHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (396)
.++++.... |+...+..+...+...|++++|.+.|+++.+.... +..+|..+...+...|++++|...+++
T Consensus 265 ~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 265 LLQESINLH--------PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHC--------CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcC--------CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999864 56888999999999999999999999999886544 688899999999999999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 314 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
+.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.|+++.+..
T Consensus 336 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 336 AQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99764 335678899999999999999999999999986 34567889999999999999999999999987643
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=5.3e-18 Score=150.48 Aligned_cols=270 Identities=13% Similarity=0.069 Sum_probs=226.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
++..+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+..+. +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 45678888999999999999999999998764 346788999999999999999999999999987533 6789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC--ccHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCcccccC
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCK--PNVITYSTL------------INGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (396)
.+...|++++|...|+++.+.... .+...+..+ ...+...|++++|...++++.... +.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~ 152 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-------VW 152 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CC
Confidence 999999999999999999987420 245555555 578999999999999999999875 56
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH----
Q 041816 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN---- 327 (396)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~---- 327 (396)
+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 230 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH
Confidence 7889999999999999999999999999887543 78899999999999999999999999998753 22333332
Q ss_pred --------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 328 --------VIMDELCKNGKMDEASRLLELMILRGVNPNT----STFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 328 --------~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.+...+.+.|++++|...++++.+.. +.+. ..+..+...+...|++++|.+.+++..+.
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 23667899999999999999999863 2233 33556778999999999999999999875
No 18
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=3e-19 Score=156.53 Aligned_cols=267 Identities=11% Similarity=-0.064 Sum_probs=222.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++++.+... .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 44567778888999999999999999998764 34777888899999999999999999999998753 37888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHhcCCCCccccc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTL--------------IN-GLCRTGHTIVALNLFEEMANGNGKFGVVCK 250 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (396)
.+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.... +
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~ 169 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-------P 169 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-------T
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-------C
Confidence 9999999999999999998764 2233333333 22 3778899999999999998875 5
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 041816 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330 (396)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 330 (396)
.+...+..+...+...|++++|.+.++++.+.... +..++..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 247 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMA 247 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 57889999999999999999999999999876543 67889999999999999999999999998754 34578899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 331 DELCKNGKMDEASRLLELMILRGVNP-----------NTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
..|...|++++|.+.++++.+..... +...|..+..++...|++++|..++++.
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999998752211 4788999999999999999999988754
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=3.7e-18 Score=160.30 Aligned_cols=297 Identities=12% Similarity=0.006 Sum_probs=223.5
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC---------------------
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST--------------------- 136 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------- 136 (396)
+..+...|++++|++.|+++++..| .+...+..+..++...|++++|++.|+.+...
T Consensus 66 a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 143 (537)
T 3fp2_A 66 SACYISTGDLEKVIEFTTKALEIKP--DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAM 143 (537)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Confidence 4456677899999999999998765 47888999999999999999998877433100
Q ss_pred --------------------------------------------------------------------------------
Q 041816 137 -------------------------------------------------------------------------------- 136 (396)
Q Consensus 137 -------------------------------------------------------------------------------- 136 (396)
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp HHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence
Q ss_pred ------CCCCC--------HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 137 ------GLFPD--------LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202 (396)
Q Consensus 137 ------~~~p~--------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 202 (396)
...|+ ..++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...+++
T Consensus 224 ~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 224 MYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 01111 1234455566677788888888888888764 4477777888888888888888888888
Q ss_pred HHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 203 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
+.+.. +.+..+|..+...+...|++++|...++++.... +.+...+..+..++...|++++|.+.++++.+.
T Consensus 302 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 302 AVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-------PENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 87764 3467778888888888888888888888888764 445677888888888888888888888888776
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhhHHHHHHHHHhc----------CCHHHHHHHHH
Q 041816 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG-----VQPDVVTFNVIMDELCKN----------GKMDEASRLLE 347 (396)
Q Consensus 283 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~ 347 (396)
... +...+..+...+...|++++|...++++.+.. .......+......+... |++++|...|+
T Consensus 374 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 374 FPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp CTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred CCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence 433 56678888888888888888888888877532 111112234445667777 88999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 348 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
++.+. .+.+...+..+...|...|++++|.+.|++..+..
T Consensus 453 ~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 453 KACEL-DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88876 24467889999999999999999999999988754
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1.8e-19 Score=160.81 Aligned_cols=257 Identities=8% Similarity=-0.024 Sum_probs=211.0
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
+...|++++|+.+|+++++..+ .+..+|..+..++...|++++|++.|+++.+.. +.+..++..+..++...|++++
T Consensus 75 ~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 151 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQDP--GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQD 151 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHH
Confidence 4456789999999999999766 478899999999999999999999999998864 3468889999999999999999
Q ss_pred HHHHHHHHHhcCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHhcCChHH
Q 041816 161 GFVVLGRILRSCFTP---------DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK-PNVITYSTLINGLCRTGHTIV 230 (396)
Q Consensus 161 a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~ 230 (396)
|...++++.+..... ....+..+...+...|++++|..+++++.+.... .+..++..+...|...|++++
T Consensus 152 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~ 231 (365)
T 4eqf_A 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNR 231 (365)
T ss_dssp HHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHH
Confidence 999999998864210 1223345588899999999999999999987522 168899999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 041816 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310 (396)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 310 (396)
|+..++++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.... +..+|..+...|...|++++|...
T Consensus 232 A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 232 AIDAFNAALTVR-------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999875 567889999999999999999999999999886543 688899999999999999999999
Q ss_pred HHHHHHCCC---C--------CCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 311 LIEMMDQGV---Q--------PDVVTFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 311 ~~~~~~~~~---~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
++++.+... . .+...|..+..++...|+.+.+.++.++
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999886321 1 1357889999999999999998887664
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=5e-19 Score=155.13 Aligned_cols=256 Identities=10% Similarity=-0.015 Sum_probs=215.6
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
...|++++|+.+|+.+.+..+. +...|..+..++...|++++|.+.++++.+.. +.+..++..+...+...|++++|
T Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A 108 (327)
T 3cv0_A 32 LKLANLAEAALAFEAVCQAAPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAA 108 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 3457899999999999987654 78899999999999999999999999998764 34678899999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 041816 162 FVVLGRILRSCFTPDAVAFTSL--------------IK-GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 226 (396)
.+.++++.+.... +...+..+ .. .+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 109 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 109 LASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSN 186 (327)
T ss_dssp HHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhc
Confidence 9999999986533 33333333 22 3778899999999999998875 447889999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 041816 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306 (396)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 306 (396)
++++|...++++.... +.+..++..+...+...|++++|.+.|+++.+.... +...+..+...+...|++++
T Consensus 187 ~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 187 NYDSAAANLRRAVELR-------PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp CHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHH
Confidence 9999999999998875 567889999999999999999999999999876543 67889999999999999999
Q ss_pred HHHHHHHHHHCCCCC-----------CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 307 ANCLLIEMMDQGVQP-----------DVVTFNVIMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 307 a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
|...++++.+..... +...+..+..++.+.|+.++|..++++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999998753221 46788999999999999999999987544
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=7.4e-19 Score=156.89 Aligned_cols=257 Identities=12% Similarity=0.053 Sum_probs=216.3
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
+...|++++|+..|+++++..+ .+...|..+..++...|++++|++.++++.+.. +.+..++..+...+...|++++
T Consensus 74 ~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 150 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ 150 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4566889999999999999765 478899999999999999999999999998865 3478889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTS---------------LIKGLCAESRIMEAAALFTKLKAFGCKP-NVITYSTLINGLCR 224 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~ 224 (396)
|...++++.+.... +...+.. .+..+...|++++|...|+++.+..... +..++..+...|..
T Consensus 151 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~ 229 (368)
T 1fch_A 151 ACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229 (368)
T ss_dssp HHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence 99999999987543 2222221 2333448899999999999998875221 58889999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH
Q 041816 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304 (396)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 304 (396)
.|++++|...++++.... +.+..++..+...+...|++++|.+.|+++.+.... +...+..+...|.+.|++
T Consensus 230 ~g~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 230 SGEYDKAVDCFTAALSVR-------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAH 301 (368)
T ss_dssp TTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred cCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCH
Confidence 999999999999998875 566889999999999999999999999999876533 678899999999999999
Q ss_pred HHHHHHHHHHHHCCCC----------CCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 305 NEANCLLIEMMDQGVQ----------PDVVTFNVIMDELCKNGKMDEASRLLELM 349 (396)
Q Consensus 305 ~~a~~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 349 (396)
++|...++++.+.... ....+|..+..+|...|+.++|..++++.
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999998864211 12678999999999999999999987643
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=1.8e-17 Score=142.68 Aligned_cols=272 Identities=13% Similarity=0.086 Sum_probs=204.5
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
+..|+++.|+..++......+. ........+..+|...|++++|+..++.. -.|+..++..+...+...|+.++|
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~-~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPE-RDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHH-HHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCch-hhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3467899999988876553332 12345566788899999999999866541 346777888888899999999999
Q ss_pred HHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 162 FVVLGRILRSCFTP-DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 162 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.++++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999998876433 566777788899999999999999987 45788889999999999999999999999988
Q ss_pred cCCCCcccccCCHhh---HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 241 GNGKFGVVCKPNTVT---YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
.. |+... ...++..+...|++++|..+|+++.+... .+...|+.+..++.+.|++++|...++++.+.
T Consensus 159 ~~--------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 159 QD--------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HC--------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC--------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 64 33221 12233445566899999999999988743 47888999999999999999999999998875
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041816 318 GVQPDVVTFNVIMDELCKNGKMDE-ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 379 (396)
. +-+..++..++..+...|+.++ +.++++++.+. .|+.... .+...+.+.++++..
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~---~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFI---KEYRAKENDFDRLVL 286 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHH---HHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHH---HHHHHHHHHHHHHHH
Confidence 3 3467788889989999999876 57888888874 4443322 223344444444443
No 24
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=5.7e-20 Score=174.85 Aligned_cols=138 Identities=13% Similarity=0.165 Sum_probs=120.2
Q ss_pred cCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 041816 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD---KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 326 (396)
..-..+|++||.+|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34467999999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041816 327 NVIMDELCKNGK-MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392 (396)
Q Consensus 327 ~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 392 (396)
+++|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ .-+..|+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 999999999998 478999999999999999999999998766544 334444444 3455554
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=3.9e-17 Score=140.56 Aligned_cols=252 Identities=13% Similarity=0.095 Sum_probs=206.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041816 115 GCLAKTKHYDTVLSLFKRLNSTGLFPDL--YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192 (396)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (396)
......|+++.|+..++..... .|+. .....+.++|...|+++.|+..++. .-+|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3456679999999999876543 3443 4556778999999999999986654 235678889999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHH
Q 041816 193 IMEAAALFTKLKAFGC-KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 271 (396)
.++|++.++++...+. +-+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------~~~~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------GDSLECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------CCSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------CCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999988764 34677788888999999999999999987 2467889999999999999999
Q ss_pred HHHHHHHHhhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 272 AKELFLQMKDKNINPDVVTY---NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 272 a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
|.+.|+.+.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++
T Consensus 149 A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 149 ARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998874 443211 22334444568999999999999986 356788999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC
Q 041816 349 MILRGVNPNTSTFSTLMDGFCLTGRVNH-AKELFVSMESMG 388 (396)
Q Consensus 349 m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g 388 (396)
+.+. -+-+..++..++..+...|+.++ +.++++++.+..
T Consensus 226 al~~-~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 226 ALDK-DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHh-CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9986 34578899999999999999976 578999988743
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=2e-19 Score=171.13 Aligned_cols=165 Identities=16% Similarity=0.207 Sum_probs=132.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHH
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNS---TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (396)
..+||++|++|++.|+.++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCccc--ccCCHhhHHHHH
Q 041816 184 IKGLCAESR-IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV--CKPNTVTYTTII 260 (396)
Q Consensus 184 ~~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~li 260 (396)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..+. .+++..+++ ...+... .+|...+...|.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv---~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV---KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG---CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh---CcccCCCCCCcccccchHHHH
Confidence 999999998 578999999999999999999999998655543 333333333 3222211 112355666777
Q ss_pred HHHhccC---------CHHHHHHHHHH
Q 041816 261 DGLCKEG---------FVDKAKELFLQ 278 (396)
Q Consensus 261 ~~~~~~g---------~~~~a~~~~~~ 278 (396)
+.|.+.+ ..++-.++|++
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHH
Confidence 7887755 23555555554
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.7e-16 Score=133.96 Aligned_cols=227 Identities=10% Similarity=0.017 Sum_probs=179.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CC----HHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT--PD----AVA 179 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~ 179 (396)
....|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+++..+.... ++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 34567788888888899999999998888766 67788888888888999999999988888765322 11 577
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHH
Q 041816 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259 (396)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (396)
+..+...+...|++++|...|++..+.. |+. ..+...|++++|...++++.... +.+...+..+
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ 145 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-------PEKAEEARLE 145 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-------cchHHHHHHH
Confidence 8888888888899999999998888763 442 34566778888888888888764 4566778888
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 041816 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339 (396)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 339 (396)
...+...|++++|.+.|++..+.... +...|..+...+...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhH
Confidence 88888888888888888888776543 67778888888888888888888888888753 33467788888888888888
Q ss_pred HHHHHHHHHHHhC
Q 041816 340 DEASRLLELMILR 352 (396)
Q Consensus 340 ~~A~~~~~~m~~~ 352 (396)
++|...+++..+.
T Consensus 224 ~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 224 ASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887764
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.9e-18 Score=151.43 Aligned_cols=251 Identities=12% Similarity=0.117 Sum_probs=112.5
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
..|+.++|.++++++ +++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 456799999999998 23458999999999999999999999653 57779999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 3457888999999999999999998884 367789999999999999999999999965
Q ss_pred CCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 041816 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 322 (396)
..|..++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+. +.|
T Consensus 149 -----------~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a- 207 (449)
T 1b89_A 149 -----------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA- 207 (449)
T ss_dssp -----------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH-
T ss_pred -----------hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH-
Confidence 369999999999999999999999981 78999999999999999999966554422 234
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 041816 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT--GRVNHAKELFV 382 (396)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~ 382 (396)
.-...++..|.+.|.+++|..+++...... +-....|+-|.-+|++- |+..+.++.|.
T Consensus 208 -d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 208 -DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred -hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 335578899999999999999999998653 44677788887777654 44555555443
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=5.7e-16 Score=130.70 Aligned_cols=226 Identities=12% Similarity=0.033 Sum_probs=196.2
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cc----HHHH
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK--PN----VITY 215 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--~~----~~~~ 215 (396)
...+..+...+...|++++|...+++.++.. .+..++..+..++...|++++|...+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888999999999999999999999887 68899999999999999999999999998875311 11 5789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 041816 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295 (396)
Q Consensus 216 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 295 (396)
..+...+...|++++|...++++.... |+. ..+.+.|++++|.+.++.+...... +...+..+.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 146 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--------RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEG 146 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--------CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--------chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHH
Confidence 999999999999999999999999854 443 4566778899999999999886433 667888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 041816 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375 (396)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 375 (396)
..+...|++++|...++++.+.. +.+...+..+..+|...|++++|...++++.+. .+.+...|..+...+...|+++
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999764 346788999999999999999999999999986 3446889999999999999999
Q ss_pred HHHHHHHHHHhC
Q 041816 376 HAKELFVSMESM 387 (396)
Q Consensus 376 ~A~~~~~~m~~~ 387 (396)
+|.+.|++..+.
T Consensus 225 ~A~~~~~~a~~~ 236 (258)
T 3uq3_A 225 SALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=2.6e-16 Score=129.50 Aligned_cols=199 Identities=12% Similarity=0.040 Sum_probs=152.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHh
Q 041816 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254 (396)
Q Consensus 175 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (396)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++..+.. |.+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~~ 74 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-------PRYLG 74 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHH
Confidence 455667777777777888888888888777664 3467777777778888888888888888877764 45667
Q ss_pred hHHHHHHHHhcc-----------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 041816 255 TYTTIIDGLCKE-----------GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323 (396)
Q Consensus 255 ~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 323 (396)
.+..+..++... |++++|+..|++..+..+. +...|..+...+...|++++|+..|+++.+.. .+.
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~ 151 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cch
Confidence 777777777777 9999999999999887554 67889999999999999999999999999877 688
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
..+..+..+|...|++++|...|+++.+. -+.+...+..+...+...|++++|...|++..
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 89999999999999999999999999986 34478889999999999999999999998764
No 31
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=3.7e-14 Score=131.60 Aligned_cols=283 Identities=10% Similarity=-0.007 Sum_probs=155.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----c
Q 041816 84 AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK----TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK----M 155 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~ 155 (396)
.+++++|+..|++..+.+ ++..+..|...|.. .+++++|++.|++..+.| +...+..+...|.. .
T Consensus 92 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 567777777777776643 45566666667766 667777777777776654 45556666666665 5
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----cCC
Q 041816 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA----ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR----TGH 227 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~ 227 (396)
+++++|.+.|++..+.+ +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .++
T Consensus 165 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 66777777777666654 45566666666665 566666666666665543 34445555555554 455
Q ss_pred hHHHHHHHHHHHhcCCCCc-----------c----------------cccCCHhhHHHHHHHHhcc-----CCHHHHHHH
Q 041816 228 TIVALNLFEEMANGNGKFG-----------V----------------VCKPNTVTYTTIIDGLCKE-----GFVDKAKEL 275 (396)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~-----------~----------------~~~~~~~~~~~li~~~~~~-----g~~~~a~~~ 275 (396)
.++|..+|++..+.+.... . .-.-+...+..+...|... +++++|...
T Consensus 239 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 5555555555554330000 0 0000223333344444433 444445544
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHH
Q 041816 276 FLQMKDKNINPDVVTYNSLIHGFCYAN---DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK----NGKMDEASRLLEL 348 (396)
Q Consensus 276 ~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 348 (396)
|++..+.+ +...+..+...|...| ++++|...|++..+.| +...+..+...|.. .++.++|...|++
T Consensus 319 ~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 319 YTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 44444432 2334444444444433 4455555555555432 34455555555555 5566666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 041816 349 MILRGVNPNTSTFSTLMDGFCL----TGRVNHAKELFVSMESMG 388 (396)
Q Consensus 349 m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 388 (396)
..+.| +...+..|...|.. .++.++|..+|++..+.|
T Consensus 393 A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 393 AAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 65543 34555555555555 566666666666655544
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=6.1e-14 Score=130.14 Aligned_cols=273 Identities=12% Similarity=0.037 Sum_probs=195.1
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK----TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK---- 154 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 154 (396)
..+++++|+..|++..+.+ ++..+..|...|.. .+++++|++.|++..+.| +...+..+...|..
T Consensus 55 ~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 55 TTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 4688999999999998753 56788889999998 999999999999998865 66777888888888
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----cC
Q 041816 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA----ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR----TG 226 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g 226 (396)
.+++++|..+|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+
T Consensus 128 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 201 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVER 201 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCc
Confidence 789999999999999876 67788888888887 789999999999999875 67888899999988 89
Q ss_pred ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--
Q 041816 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK----EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY-- 300 (396)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-- 300 (396)
+.++|..+|++..+.+ +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|..
T Consensus 202 ~~~~A~~~~~~a~~~~---------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 202 NDAISAQWYRKSATSG---------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGL 269 (490)
T ss_dssp CHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCC
Confidence 9999999999998765 44566666666664 667777777777766553 34455555555555
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 041816 301 --ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN-----GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG- 372 (396)
Q Consensus 301 --~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g- 372 (396)
.+++++|...|++..+.| +...+..+...|... ++.++|...|++..+.| +...+..+...|...|
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGS 343 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Confidence 566666666666665543 333444444455444 55555555555554432 2333333444443333
Q ss_pred --CHHHHHHHHHHHHh
Q 041816 373 --RVNHAKELFVSMES 386 (396)
Q Consensus 373 --~~~~A~~~~~~m~~ 386 (396)
+.++|.++|++..+
T Consensus 344 ~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 34444444444433
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=2.9e-16 Score=133.98 Aligned_cols=253 Identities=11% Similarity=-0.070 Sum_probs=165.5
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 155 (396)
+......|++++|+..|+.+++..+. +.+...|..+..++...|++++|++.|+++.+.. +.+...|..+...+...
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHc
Confidence 34556678899999999998886432 2356678888888888899999999998887754 23577788888888888
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 041816 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 235 (396)
|++++|...++++++.... +..++..+...|...|++++|...|+++.+.. |+.......+..+...|++++|...+
T Consensus 91 ~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888888888888876533 56777788888888888888888888887753 33333334444556667888888888
Q ss_pred HHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP---DVVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
++..... +++...+ .++..+...++.++|.+.++......... +...+..+...|...|++++|...++
T Consensus 168 ~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 239 (275)
T 1xnf_A 168 KQHFEKS-------DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 239 (275)
T ss_dssp HHHHHHS-------CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcC-------CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7766653 3333333 36666667777777777777765542110 13455556666666666666666666
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346 (396)
Q Consensus 313 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 346 (396)
++.+.. |+. +.....++...|++++|++.+
T Consensus 240 ~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 240 LAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 665532 321 122233444555555555443
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=5.6e-16 Score=127.51 Aligned_cols=199 Identities=17% Similarity=0.034 Sum_probs=142.1
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 041816 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219 (396)
Q Consensus 140 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 219 (396)
++...+..+...+.+.|++++|...|++.++..+. +...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34455566666666666666666666666665432 56666666666666666666666666666653 33455666666
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCh
Q 041816 220 NGLCRT-----------GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288 (396)
Q Consensus 220 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 288 (396)
.++... |++++|+..+++..+.. +.+...+..+..++...|++++|+..|++..+.. .+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~ 151 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-------PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTP 151 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cch
Confidence 666666 99999999999999875 5578899999999999999999999999998877 588
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
..+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999863 3457788899999999999999999998764
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=3.8e-15 Score=126.88 Aligned_cols=235 Identities=11% Similarity=0.073 Sum_probs=157.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC--CHHHHHHHHH
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP--DAVAFTSLIK 185 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 185 (396)
..+......+...|++++|+..|+++.+... .+...+..+..++...|++++|+..+++..+....+ ....|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3445566677777778888888877776542 244467777777777788888887777777632111 2334677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
.+...|++++|+..|++..+.. +.+..+|..+...|...|++++|...+++..+.. +.+...|..+...+..
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-------TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-------CCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-------CCcHHHHHHHHHHHHH
Confidence 7777788888888887777654 3355677777777888888888888887777653 4456666666623333
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HhhHHHHHHHHHh
Q 041816 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND---WNEANCLLIEMMDQG-VQPD------VVTFNVIMDELCK 335 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~ 335 (396)
.+++++|.+.|+++.+.... +...+..+...+...|+ +++|...++++.+.. -.|+ ...|..+...|..
T Consensus 155 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 44788888888777765432 45666667777777776 777777777766431 1122 1466667777778
Q ss_pred cCCHHHHHHHHHHHHhC
Q 041816 336 NGKMDEASRLLELMILR 352 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~~~ 352 (396)
.|++++|.+.|+++.+.
T Consensus 234 ~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 234 NRDKVKADAAWKNILAL 250 (272)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 88888888888887765
No 36
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=1.8e-15 Score=134.64 Aligned_cols=250 Identities=7% Similarity=0.032 Sum_probs=207.8
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hhhHHHHHHHHHhcCCCCCHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR-VSHGFVVLGRILRSCFTPDAVAFTSL 183 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (396)
.....|+.+..++...|++++|++.++++.+.. +-+...|+.+..++...|+ +++|+..++++++..+. +..+|..+
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 456788889999999999999999999998865 2367788999999999997 99999999999998754 78999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHH
Q 041816 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263 (396)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (396)
..++...|++++|+..|+++.+.. +-+..+|..+..++.+.|++++|+..++++.+.. +.+...|+.+..++
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-------P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-------VRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 999999999999999999999875 4578999999999999999999999999999976 66788999999999
Q ss_pred hc-cCCHHHH-----HHHHHHHhhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041816 264 CK-EGFVDKA-----KELFLQMKDKNINPDVVTYNSLIHGFCYAN--DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335 (396)
Q Consensus 264 ~~-~g~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 335 (396)
.+ .|..++| ++.|++....... +...|+.+...+...| ++++|...+.++ +. .+.+...+..+..+|.+
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHH
Confidence 99 6665777 5888888876544 6778999988898888 689999999888 33 34456788889999988
Q ss_pred cC---------CHHHHHHHHHHH-HhCCCCC-CHHHHHHHHHHHH
Q 041816 336 NG---------KMDEASRLLELM-ILRGVNP-NTSTFSTLMDGFC 369 (396)
Q Consensus 336 ~g---------~~~~A~~~~~~m-~~~g~~p-~~~~~~~li~~~~ 369 (396)
.| ..++|.++++++ .+. .| ....|..+...+.
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 74 358999999998 553 44 4455665555543
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=3.4e-14 Score=121.24 Aligned_cols=225 Identities=10% Similarity=-0.065 Sum_probs=179.0
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCCHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK----MGRVSHGFVVLGRILRSCFTPDAVAF 180 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 180 (396)
.++..+..+...+...|++++|++.|++..+. -+...+..+...+.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 46677888888888888999999999888873 356677778888888 888999999888888875 67778
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCcccccCC
Q 041816 181 TSLIKGLCA----ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR----TGHTIVALNLFEEMANGNGKFGVVCKPN 252 (396)
Q Consensus 181 ~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (396)
..+...|.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---------~ 145 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---------D 145 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---------C
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---------c
Confidence 888888888 888899998888888764 67778888888888 888888888888888754 4
Q ss_pred HhhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHh
Q 041816 253 TVTYTTIIDGLCK----EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY----ANDWNEANCLLIEMMDQGVQPDVV 324 (396)
Q Consensus 253 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~ 324 (396)
...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +..
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 219 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG 219 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHH
Confidence 5667777777777 888888888888887764 56677778888888 888888888888888764 256
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 041816 325 TFNVIMDELCK----NGKMDEASRLLELMILRG 353 (396)
Q Consensus 325 ~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 353 (396)
.+..+...|.. .+++++|.+.|++..+.|
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 67777777877 788888888888887753
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=5.6e-14 Score=119.87 Aligned_cols=224 Identities=15% Similarity=-0.032 Sum_probs=199.9
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHH
Q 041816 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA----ESRIMEAAALFTKLKAFGCKPNVITYS 216 (396)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~ 216 (396)
+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56778888899999999999999999999843 56788889999999 999999999999999876 778899
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCCh
Q 041816 217 TLINGLCR----TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK----EGFVDKAKELFLQMKDKNINPDV 288 (396)
Q Consensus 217 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~ 288 (396)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 99999999 999999999999998864 67889999999999 999999999999999876 66
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 041816 289 VTYNSLIHGFCY----ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK----NGKMDEASRLLELMILRGVNPNTST 360 (396)
Q Consensus 289 ~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 360 (396)
..+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 220 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 220 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHH
Confidence 788888888888 999999999999999864 56788889999999 999999999999999864 3778
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 041816 361 FSTLMDGFCL----TGRVNHAKELFVSMESMG 388 (396)
Q Consensus 361 ~~~li~~~~~----~g~~~~A~~~~~~m~~~g 388 (396)
+..+...|.. .+++++|.++|++..+.|
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888899998 999999999999998876
No 39
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=1.4e-16 Score=140.70 Aligned_cols=264 Identities=13% Similarity=0.089 Sum_probs=135.0
Q ss_pred HhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041816 73 RCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152 (396)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 152 (396)
....++.++...|++++|++.|.+. ++...|..++.++...|++++|+..++...+. .+++.+.+.++.+|
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHH
Confidence 4456788899999999999999764 57778999999999999999999988777663 45678899999999
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHH
Q 041816 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232 (396)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 232 (396)
.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|..+ ..|..++.++.+.|++++|.
T Consensus 105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence 99999999888874 367789999999999999999999999976 36999999999999999999
Q ss_pred HHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
+.++++. ++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|.+++|..+++
T Consensus 169 ea~~KA~------------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 169 DGARKAN------------STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHHHHHT------------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcC------------CchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999872 58999999999999999999966555432 244446679999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR-GVNP------NTSTFSTLMDGFCLTGRVNHAKEL 380 (396)
Q Consensus 313 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p------~~~~~~~li~~~~~~g~~~~A~~~ 380 (396)
...... +-....|+-+.-.|++- ++++.++.++....+ .++| +...|..++..|.+.++++.|...
T Consensus 232 ~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 232 AALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 988654 44567788887777765 234444333333222 2233 467799999999999999988763
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=1.3e-14 Score=122.14 Aligned_cols=201 Identities=12% Similarity=-0.047 Sum_probs=121.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (396)
...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4456666666777777777777777766543 234556666666666777777777777766665422 55666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 187 LCAESRIMEAAALFTKLKAFGCKP-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
|...|++++|.++++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-------RNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHH
Confidence 666666666666666666522222 44555666666666666666666666666543 3345556666666666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
.|++++|...++++.+... .+...+..+...+...|++++|...++++.+.
T Consensus 188 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666666666655432 24445555555556666666666666665543
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=8.3e-16 Score=131.14 Aligned_cols=248 Identities=11% Similarity=-0.020 Sum_probs=195.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCC---CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041816 118 AKTKHYDTVLSLFKRLNSTGLF---PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194 (396)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (396)
...|++++|++.++++.+.... .+..++..+...+...|++++|...|+++++..+. +..++..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 3458899999999999876321 24567888999999999999999999999987643 7889999999999999999
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHH
Q 041816 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274 (396)
Q Consensus 195 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 274 (396)
+|...|+++.+.. +.+..++..+...|...|++++|...++++.+.. |+.......+..+...|++++|..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--------PNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999874 3467889999999999999999999999999864 444444555556677899999999
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ---PDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 275 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
.+++...... ++... ..++..+...++.++|...+.++.+.... .+...+..+...|...|++++|...|+++.+
T Consensus 166 ~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 166 VLKQHFEKSD-KEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHSC-CCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCC-cchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9988876532 24334 44777788889999999999988754211 1157888999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041816 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381 (396)
Q Consensus 352 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 381 (396)
. .|+. +.....++...|++++|++.+
T Consensus 244 ~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 244 N--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred C--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 5 3422 333355777889999988776
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=1.7e-14 Score=121.39 Aligned_cols=202 Identities=13% Similarity=-0.040 Sum_probs=160.3
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 221 (396)
...+..+...+...|++++|.+.++++.+... .+...+..+...|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 45677788888899999999999999887653 367888888888999999999999999888764 3467788888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 041816 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301 (396)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 301 (396)
|...|++++|.+.++++...+. .+.+...+..+..++...|++++|.+.|++..+.... +...+..+...+...
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTL-----YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKE 188 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTT-----CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHhCcc-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHc
Confidence 8999999999999988877210 1345677888888888888898888888888776433 567788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 302 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
|++++|...++++.+.. +.+...+..+...+...|+.++|.+.++++.+.
T Consensus 189 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888887653 345667777788888888888888888888775
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=7.7e-15 Score=124.97 Aligned_cols=237 Identities=8% Similarity=0.042 Sum_probs=193.7
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--cHHHHHHHH
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP--NVITYSTLI 219 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~ll 219 (396)
...+......+...|++++|+..+++.++..+. +...+..+..+|...|++++|+..+++..+.+..+ ...+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 445667778899999999999999999987543 56688889999999999999999999998843222 234588999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041816 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 299 (396)
..+...|++++|+..+++..+.. +.+..++..+...|...|++++|.+.|++..+.... +...|..+...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHH
Confidence 99999999999999999999875 556789999999999999999999999999887433 6677777773444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHH
Q 041816 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK---MDEASRLLELMILRG-VNPN------TSTFSTLMDGFC 369 (396)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~li~~~~ 369 (396)
..+++++|...++++.+.. +.+...+..+..++...|+ .++|...++++.+.. -.|+ ...|..+...|.
T Consensus 154 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 5569999999999999853 3346778888888888888 888999998887641 1133 267888999999
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 041816 370 LTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 370 ~~g~~~~A~~~~~~m~~~g 388 (396)
..|++++|.+.|++..+..
T Consensus 233 ~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALD 251 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 9999999999999998754
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.70 E-value=7.8e-15 Score=130.57 Aligned_cols=233 Identities=12% Similarity=0.034 Sum_probs=200.9
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR-IMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
...|..+...+...|++++|+..++++++..+. +..+|+.+..++...|+ +++|+..|+++.+.. +.+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 456777888899999999999999999998644 78899999999999997 999999999999875 447889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 300 (396)
++...|++++|+..|+++.... +.+...|..+..++.+.|++++|+..|+++.+.+.. +...|+.+..++..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 9999999999999999999986 678899999999999999999999999999988665 78899999999999
Q ss_pred -cCCHHHH-----HHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 041816 301 -ANDWNEA-----NCLLIEMMDQGVQPDVVTFNVIMDELCKNG--KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372 (396)
Q Consensus 301 -~~~~~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 372 (396)
.|..++| +..+++.++.. +-+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+...|.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHh
Confidence 6665777 58888888753 335678888899999888 689999999988 33 4557788899999998874
Q ss_pred ---------CHHHHHHHHHHH-HhC
Q 041816 373 ---------RVNHAKELFVSM-ESM 387 (396)
Q Consensus 373 ---------~~~~A~~~~~~m-~~~ 387 (396)
..++|.++|+++ .+.
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHh
Confidence 358999999998 553
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.69 E-value=2.3e-14 Score=118.15 Aligned_cols=203 Identities=10% Similarity=-0.051 Sum_probs=122.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
.++..|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 345566666777777777777777777766543 23455666666667777777777777776666542 2555666666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHH
Q 041816 185 KGLCAE-SRIMEAAALFTKLKAFGCKP-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262 (396)
Q Consensus 185 ~~~~~~-g~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 262 (396)
..+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~ 156 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-------PQFPPAFKELART 156 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCchHHHHHHHH
Confidence 666666 66666666666666522122 24556666666666666666666666666543 3345556666666
Q ss_pred HhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
+...|++++|.+.++++.+.....+...+..+...+...|+.+++..+++.+.+
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666666666666655543212444455555555556666666665555543
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.69 E-value=3.5e-15 Score=124.76 Aligned_cols=197 Identities=16% Similarity=0.155 Sum_probs=82.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (396)
.|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHH
Confidence 34444444444455555555555544432 12344444444444455555555555554444321 13444444445555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+.+.|+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-------ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTC
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHcCC
Confidence 5555555555555444432 2234444444555555555555555555544432 2334444444444445555
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
+++|.+.|+++.+.... +..++..+...+...|++++|...++++.+
T Consensus 175 ~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55555555444433221 333444444444444444444444444443
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.69 E-value=4e-15 Score=124.40 Aligned_cols=213 Identities=13% Similarity=0.041 Sum_probs=157.1
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 041816 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219 (396)
Q Consensus 140 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 219 (396)
.....|..+...+...|++++|...++++++... .+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 3456677788888899999999999999988653 368888889999999999999999999988764 34678888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041816 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 299 (396)
..+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.... +...+..+...+.
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 99999999999999999988865 557778888899999999999999999998876433 6778888888899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041816 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364 (396)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 364 (396)
..|++++|...++++.+.. +.+..++..+..+|...|++++|.+.++++.+.. +.+...+..+
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 9999999999999888753 3457788888889999999999999999888752 3344444433
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=3.6e-14 Score=116.92 Aligned_cols=203 Identities=8% Similarity=-0.051 Sum_probs=120.5
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
+...+..+...+...|++++|.+.++.+.+... .+...+..+...|...|++++|..+++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 344556666666666777777777666666542 245566666666666666666666666666543 234556666666
Q ss_pred HHHhc-CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041816 221 GLCRT-GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299 (396)
Q Consensus 221 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 299 (396)
.+... |++++|...++++..... .+.+...+..+..++...|++++|.+.|+++.+.... +...+..+...+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 158 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPT-----YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKM 158 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTT-----CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHH
Confidence 66666 666666666666665210 1223455666666666666666666666666554322 4555666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
..|++++|...++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666666665532113444555555555666666666666666554
No 49
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=4.1e-13 Score=125.87 Aligned_cols=169 Identities=12% Similarity=0.076 Sum_probs=130.0
Q ss_pred cHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041816 211 NVITYSTLINGLCR-------TGHTI-------VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276 (396)
Q Consensus 211 ~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 276 (396)
+...|..++..+.+ .|+++ +|..++++..+.. .+.+...|..++..+.+.|++++|..+|
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~------~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL------LKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT------CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34455555555554 68876 8899999888632 2557889999999999999999999999
Q ss_pred HHHhhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCC
Q 041816 277 LQMKDKNINPD-VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE-LCKNGKMDEASRLLELMILRGV 354 (396)
Q Consensus 277 ~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~g~ 354 (396)
+++.+.... + ...|..++..+.+.|++++|..+|++..+.. +.+...|...+.. +...|+.++|..+|+...+. .
T Consensus 345 ~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-~ 421 (530)
T 2ooe_A 345 NRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-Y 421 (530)
T ss_dssp HHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-H
T ss_pred HHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-C
Confidence 999986322 3 2578888888889999999999999998752 2223333322222 34689999999999998876 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 355 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
+.+...|..++..+.+.|+.++|..+|++....+
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 4468899999999999999999999999998864
No 50
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=8.3e-14 Score=128.52 Aligned_cols=299 Identities=10% Similarity=-0.051 Sum_probs=216.8
Q ss_pred CCCccccCChhHHHHHHHHHHhc-------CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-C-CCCHH
Q 041816 78 GQGDITAITPNEAFCIFDYMLNM-------RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-----G-L-FPDLY 143 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~-~p~~~ 143 (396)
|..+...|++++|++.|++.++. ...+....+|+.+..+|...|++++|...+++..+. + . .....
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 44455678999999999987653 123346778999999999999999999999887542 1 0 11345
Q ss_pred hHHHHHHHHHhc--CChhhHHHHHHHHHhcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH
Q 041816 144 TYNILINCFCKM--GRVSHGFVVLGRILRSCFTPDAVAFTSLIKG---LCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218 (396)
Q Consensus 144 ~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 218 (396)
++.....++... +++++|++.|++.++..+. +...+..+..+ +...++.++|++.+++..+.. +.+..++..+
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l 215 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLL 215 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHH
Confidence 666665555554 4689999999999987643 56666555555 345677788999999888765 3456667666
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 041816 219 INGLCR----TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294 (396)
Q Consensus 219 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 294 (396)
...+.. .|+.++|.+.+++..... +.+..++..+...|...|++++|...+++..+..+. +..++..+
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 287 (472)
T 4g1t_A 216 ALKLHKMREEGEEEGEGEKLVEEALEKA-------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQI 287 (472)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHH
Confidence 655554 467789999999988875 667888999999999999999999999999886544 56667766
Q ss_pred HHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041816 295 IHGFCYA-------------------NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355 (396)
Q Consensus 295 i~~~~~~-------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 355 (396)
...|... +.+++|...+++..+.. +.+...+..+...|...|++++|...|++..+....
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 6655332 23567888888877653 345668889999999999999999999999886433
Q ss_pred CCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHhC
Q 041816 356 PNT--STFSTLMD-GFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 356 p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~ 387 (396)
+.. ..+..+.. .....|+.++|+..|++..+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 322 12333332 335789999999999998764
No 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.66 E-value=4.5e-15 Score=134.46 Aligned_cols=278 Identities=13% Similarity=0.050 Sum_probs=203.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhhHHHHHHHHHhc----C-CCCCHH
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL----YTYNILINCFCKMGRVSHGFVVLGRILRS----C-FTPDAV 178 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~ 178 (396)
..+..+...+...|++++|+..|+++.+.+. .+. ..+..+...+...|++++|...+++.++. + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3444566677788888888888888877532 122 46777778888888888888888877653 1 122456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCccHHHHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAF----G-CKPNVITYSTLINGLCRTGH-----------------TIVALNLFE 236 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g-~~~~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~ 236 (396)
++..+...|...|++++|...+++..+. + .+....++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7778888888899999999888877654 1 12235577888888999999 888888888
Q ss_pred HHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN-PD----VVTYNSLIHGFCYANDWNEANCLL 311 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~ 311 (396)
+........+. .+....++..+...|...|++++|.+.+++..+.... .+ ...+..+...|...|++++|...+
T Consensus 208 ~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 208 ENLKLMRDLGD-RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 76543100000 1123457888899999999999999999998653211 11 237888999999999999999999
Q ss_pred HHHHHCCC----C-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041816 312 IEMMDQGV----Q-PDVVTFNVIMDELCKNGKMDEASRLLELMILR----GV-NPNTSTFSTLMDGFCLTGRVNHAKELF 381 (396)
Q Consensus 312 ~~~~~~~~----~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~ 381 (396)
++..+... . ....++..+...|...|++++|...+++..+. +. .....++..+...|...|++++|.++|
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 98875311 0 11467888999999999999999999988763 11 112457888899999999999999999
Q ss_pred HHHHhC
Q 041816 382 VSMESM 387 (396)
Q Consensus 382 ~~m~~~ 387 (396)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 52
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=2.3e-13 Score=125.53 Aligned_cols=278 Identities=14% Similarity=-0.006 Sum_probs=204.4
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C---CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC-
Q 041816 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-----G---LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC- 172 (396)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 172 (396)
..+.....||.|..++...|++++|++.|++..+. + -+....+|+.+..+|...|++++|...+++..+..
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 33345678999999999999999999999987542 1 12245689999999999999999999999886531
Q ss_pred -----C-CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCccHHHHHHHHHH---HHhcCChHHHHHHHHHHHhc
Q 041816 173 -----F-TPDAVAFTSLIKGLCAE--SRIMEAAALFTKLKAFGCKPNVITYSTLING---LCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 173 -----~-~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~ 241 (396)
. .....++..+..++... +++++|+..|++..+.. +-+...+..+..+ +...++.++|++.+++..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 12355666666555554 57999999999998874 3355666655554 44568888999999998886
Q ss_pred CCCCcccccCCHhhHHHHHHHHh----ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 242 NGKFGVVCKPNTVTYTTIIDGLC----KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
. +.+..++..+...+. ..|++++|.+++++....... +...+..+...|...|++++|...+.++.+.
T Consensus 205 ~-------p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 205 N-------PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp C-------SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-------CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 5 456666766655544 356788999999998876544 7778999999999999999999999999875
Q ss_pred CCCCCHhhHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041816 318 GVQPDVVTFNVIMDELCKN-------------------GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 378 (396)
. +-+..++..+..+|... +..++|...+++..+. -+.+...+..+...|...|++++|.
T Consensus 277 ~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 277 I-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA-NDNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp S-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH-CTTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-CCchhhhhhhHHHHHHHhccHHHHH
Confidence 3 23456666666655432 2356778888887765 2345677888999999999999999
Q ss_pred HHHHHHHhCCCC
Q 041816 379 ELFVSMESMGCK 390 (396)
Q Consensus 379 ~~~~~m~~~g~~ 390 (396)
+.|++..+....
T Consensus 355 ~~~~kaL~~~~~ 366 (472)
T 4g1t_A 355 YYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHSCCC
T ss_pred HHHHHHHhcCCC
Confidence 999999876543
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=1.1e-14 Score=131.40 Aligned_cols=280 Identities=13% Similarity=0.023 Sum_probs=212.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhc----CCC-C
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD----LYTYNILINCFCKMGRVSHGFVVLGRILRS----CFT-P 175 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~ 175 (396)
.....+......+...|++++|+..|+++.+.+. .+ ...+..+...+...|++++|...+++.++. +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 4566677788889999999999999999987642 23 356788888999999999999999987653 111 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CC-ccHHHHHHHHHHHHhcCC--------------------hHH
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFG----CK-PNVITYSTLINGLCRTGH--------------------TIV 230 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g----~~-~~~~~~~~ll~~~~~~g~--------------------~~~ 230 (396)
...++..+...|...|++++|...+++..+.. .. ....++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 35677888899999999999999998876541 11 114478888999999999 999
Q ss_pred HHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CC----hhhHHHHHHHHHhcCCHH
Q 041816 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN-PD----VVTYNSLIHGFCYANDWN 305 (396)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~ 305 (396)
|...+++........+. .+....++..+...|...|++++|.+.+++..+.... ++ ..++..+...+...|+++
T Consensus 166 A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 99999887653210000 1122457888899999999999999999998653111 12 337888999999999999
Q ss_pred HHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHH
Q 041816 306 EANCLLIEMMDQ----GVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILR----GVNP-NTSTFSTLMDGFCLTGRVN 375 (396)
Q Consensus 306 ~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~ 375 (396)
+|...+++..+. +..+. ..++..+...|...|++++|...+++..+. +..+ ...++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998743 11111 457888999999999999999999988753 1111 1567888889999999999
Q ss_pred HHHHHHHHHHh
Q 041816 376 HAKELFVSMES 386 (396)
Q Consensus 376 ~A~~~~~~m~~ 386 (396)
+|.+.+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=3.6e-15 Score=134.59 Aligned_cols=293 Identities=14% Similarity=0.070 Sum_probs=218.2
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHH
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPP--LTSFNLLFGCLAKTKHYDTVLSLFKRLNST----GLFP-DLYTYNILINCFC 153 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~ 153 (396)
+...|++++|+..|+++++..+..+. ..+|..+..++...|++++|+..+++.... +-.| ...++..+...+.
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 98 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 98 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 45668899999999999998654222 357888999999999999999999987542 2112 2456788888999
Q ss_pred hcCChhhHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhc--
Q 041816 154 KMGRVSHGFVVLGRILRSCFT-----PDAVAFTSLIKGLCAESR--------------------IMEAAALFTKLKAF-- 206 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~~-- 206 (396)
..|++++|...+++..+.... ....++..+...|...|+ +++|...+++..+.
T Consensus 99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 178 (406)
T 3sf4_A 99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT 178 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988764211 124578888999999999 99999999876543
Q ss_pred --CCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCC
Q 041816 207 --GCK-PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283 (396)
Q Consensus 207 --g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 283 (396)
+.. ....++..+...|...|++++|...+++........+. ......++..+...|...|++++|...+++.....
T Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 211 12457888999999999999999999998764311000 01113478889999999999999999999876431
Q ss_pred CC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 041816 284 IN-PD----VVTYNSLIHGFCYANDWNEANCLLIEMMDQ----GVQP-DVVTFNVIMDELCKNGKMDEASRLLELMILR- 352 (396)
Q Consensus 284 ~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 352 (396)
.. .+ ..++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+.
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 01 557888999999999999999999998753 1111 1457888999999999999999999987753
Q ss_pred ---CCC-CCHHHHHHHHHHHHhcCCH
Q 041816 353 ---GVN-PNTSTFSTLMDGFCLTGRV 374 (396)
Q Consensus 353 ---g~~-p~~~~~~~li~~~~~~g~~ 374 (396)
+.. ....++..+...+...|+.
T Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 338 REVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 211 1245667777777777765
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=5.8e-15 Score=133.72 Aligned_cols=273 Identities=13% Similarity=0.071 Sum_probs=207.9
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHHhHHHHHHH
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPP--LTSFNLLFGCLAKTKHYDTVLSLFKRLNST----GL-FPDLYTYNILINC 151 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~~li~~ 151 (396)
..+...|++++|+..|+++++..+..+. ...|..+..++...|++++|++.+++..+. +- ......+..+...
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 3445678999999999999998654221 157888999999999999999999988653 11 1234577888899
Q ss_pred HHhcCChhhHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhc---
Q 041816 152 FCKMGRVSHGFVVLGRILRSC-----FTPDAVAFTSLIKGLCAESR-----------------IMEAAALFTKLKAF--- 206 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~~~~--- 206 (396)
+...|++++|...+++..+.. ......++..+...|...|+ +++|+..+++..+.
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887641 12235578889999999999 99999999886543
Q ss_pred -CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 041816 207 -GC-KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284 (396)
Q Consensus 207 -g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 284 (396)
+. .....++..+...|...|++++|+..+++........+. .......+..+...|...|++++|.+.+++......
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD-RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 21 113457888999999999999999999998764310000 001123788899999999999999999998765311
Q ss_pred C-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 285 N-----PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ----GVQ-PDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 285 ~-----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
. ....++..+...+...|++++|...+++..+. +.. ....++..+...|...|++++|...+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1 12567888999999999999999999998753 111 11347788999999999999999999998864
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.62 E-value=1.5e-14 Score=126.74 Aligned_cols=278 Identities=13% Similarity=0.030 Sum_probs=202.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhc----CC-CCCHH
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD----LYTYNILINCFCKMGRVSHGFVVLGRILRS----CF-TPDAV 178 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 178 (396)
..+......+...|++++|+..|+++.+... .+ ...+..+...+...|++++|.+.+++..+. +. +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3455566677888889999998888877532 13 356777888888889999888888877543 11 12356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ccc----HHHHHHHHHHHHhcCC--------------------hHHHHH
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPN----VITYSTLINGLCRTGH--------------------TIVALN 233 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~~~----~~~~~~ll~~~~~~g~--------------------~~~a~~ 233 (396)
++..+...+...|++++|...+++..+... ..+ ..++..+...|...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 777888888899999999998888765310 011 3477888888999999 888988
Q ss_pred HHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC-----CCChhhHHHHHHHHHhcCCHHHHH
Q 041816 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI-----NPDVVTYNSLIHGFCYANDWNEAN 308 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~~~~~~a~ 308 (396)
.+++........+. .+.....+..+...+...|++++|.+.+++..+... .....++..+...+...|++++|.
T Consensus 165 ~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 165 LYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88876543100000 112245788888999999999999999998764311 111337888899999999999999
Q ss_pred HHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 041816 309 CLLIEMMDQ----GVQP-DVVTFNVIMDELCKNGKMDEASRLLELMILR----GVN-PNTSTFSTLMDGFCLTGRVNHAK 378 (396)
Q Consensus 309 ~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~ 378 (396)
..+++..+. +..+ ...++..+...|...|++++|...+++..+. +.. ....++..+...|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999988743 1111 1457788899999999999999999988753 111 12457788899999999999999
Q ss_pred HHHHHHHhC
Q 041816 379 ELFVSMESM 387 (396)
Q Consensus 379 ~~~~~m~~~ 387 (396)
+.+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998874
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=4.3e-13 Score=116.48 Aligned_cols=218 Identities=12% Similarity=0.049 Sum_probs=163.0
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-------cCCh-------hHHHHHHHHHHhC-CCCCCHHhHHHHHHHH
Q 041816 88 NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK-------TKHY-------DTVLSLFKRLNST-GLFPDLYTYNILINCF 152 (396)
Q Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~p~~~~~~~li~~~ 152 (396)
++|+.+|++++...| .++..|..++..+.. .|++ ++|..+|++..+. . +-+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 789999999998765 488889888887763 4775 8899999888873 3 23556788888888
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH-hcCChHH
Q 041816 153 CKMGRVSHGFVVLGRILRSCFTPDAV-AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC-RTGHTIV 230 (396)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~-~~g~~~~ 230 (396)
.+.|++++|..+|+++++..+. +.. +|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|+.++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 8889999999999988875432 333 78888888888888888888888888764 234445544333322 3688888
Q ss_pred HHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCC-CCC--ChhhHHHHHHHHHhcCCHHHH
Q 041816 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN-INP--DVVTYNSLIHGFCYANDWNEA 307 (396)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~~~~~~a 307 (396)
|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.++|
T Consensus 188 A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 188 AFKIFELGLKKY-------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp HHHHHHHHHHHH-------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888888887753 4567788888888888888888888888887752 333 355677777777788888888
Q ss_pred HHHHHHHHHC
Q 041816 308 NCLLIEMMDQ 317 (396)
Q Consensus 308 ~~~~~~~~~~ 317 (396)
..+++++.+.
T Consensus 261 ~~~~~~a~~~ 270 (308)
T 2ond_A 261 LKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=1.5e-12 Score=113.04 Aligned_cols=217 Identities=9% Similarity=0.024 Sum_probs=166.1
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-------hcCCh-------hhHHHHHHHHHhc-CCCCCHHHHHHHHHHHH
Q 041816 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFC-------KMGRV-------SHGFVVLGRILRS-CFTPDAVAFTSLIKGLC 188 (396)
Q Consensus 124 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 188 (396)
++|..+|+++.... +-+...|..++..+. +.|++ ++|..+|++.++. . +-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 67888888887753 346777877777765 35776 8899999998873 3 336778888899999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcc-HH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHh-c
Q 041816 189 AESRIMEAAALFTKLKAFGCKPN-VI-TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC-K 265 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~ 265 (396)
+.|++++|..+|++..+.. |+ .. +|..++..+.+.|++++|..+|++..+.. +.+...|...+.... .
T Consensus 111 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-------RTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-------TCCTHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHH
Confidence 9999999999999988753 33 33 78888888888999999999999988764 344455554443322 3
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHhhHHHHHHHHHhcCCHHHH
Q 041816 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG-VQP--DVVTFNVIMDELCKNGKMDEA 342 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A 342 (396)
.|++++|.++|+...+.... +...|..++..+.+.|++++|..+|++..... ..| ....|..++..+.+.|+.++|
T Consensus 182 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 68899999999888775433 67788888888888899999999999888863 344 356788888888888999999
Q ss_pred HHHHHHHHhC
Q 041816 343 SRLLELMILR 352 (396)
Q Consensus 343 ~~~~~~m~~~ 352 (396)
..+++++.+.
T Consensus 261 ~~~~~~a~~~ 270 (308)
T 2ond_A 261 LKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888888875
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=1e-14 Score=127.87 Aligned_cols=273 Identities=14% Similarity=0.074 Sum_probs=205.7
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHhHHHHHHH
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPP--LTSFNLLFGCLAKTKHYDTVLSLFKRLNST----GLF-PDLYTYNILINC 151 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~li~~ 151 (396)
..+...|++++|+..|+++++..+..+. ...+..+...+...|++++|++.+++..+. +-. ....++..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3445678999999999999997654221 467888999999999999999999987542 111 124577888899
Q ss_pred HHhcCChhhHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhc
Q 041816 152 FCKMGRVSHGFVVLGRILRSCFT-PD----AVAFTSLIKGLCAESR--------------------IMEAAALFTKLKAF 206 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~~ 206 (396)
+...|++++|...+.+..+.... .+ ..++..+...+...|+ +++|...+++..+.
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988753211 12 4478888899999999 99999999886543
Q ss_pred ----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 207 ----GC-KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 207 ----g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
+. .....++..+...+...|++++|...+++........+. ......++..+...+...|++++|.+.+++...
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 112457888899999999999999999988754210000 011234788889999999999999999998764
Q ss_pred CCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 282 KNIN-PD----VVTYNSLIHGFCYANDWNEANCLLIEMMDQ----GVQ-PDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 282 ~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
.... .+ ..++..+...+...|++++|...++++.+. +.. ....++..+...|.+.|++++|...+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3111 11 557788899999999999999999988753 111 1144778899999999999999999999887
Q ss_pred C
Q 041816 352 R 352 (396)
Q Consensus 352 ~ 352 (396)
.
T Consensus 332 ~ 332 (338)
T 3ro2_A 332 I 332 (338)
T ss_dssp C
T ss_pred H
Confidence 4
No 60
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=1.1e-13 Score=124.17 Aligned_cols=299 Identities=8% Similarity=-0.068 Sum_probs=210.6
Q ss_pred cccCChhHHHHHHHHHHhcCCC---CCCHhhHHHHHHHH--HhcCChhHHH-----------HHHHHHHhCCCCCCHHh-
Q 041816 82 ITAITPNEAFCIFDYMLNMRPS---PPPLTSFNLLFGCL--AKTKHYDTVL-----------SLFKRLNSTGLFPDLYT- 144 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~--~~~~~~~~a~-----------~~~~~~~~~~~~p~~~~- 144 (396)
+..+++++|..+.+.+.+.-.. .++...|..++..- ...++++.+. +.++.+.... .+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhH
Confidence 3457899999999988654221 23344444443321 1224444444 6666665421 11111
Q ss_pred -----HHHHHHHHHhcCChhhHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C----
Q 041816 145 -----YNILINCFCKMGRVSHGFVVLGRILRS----CFTP-DAVAFTSLIKGLCAESRIMEAAALFTKLKAFG--C---- 208 (396)
Q Consensus 145 -----~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g--~---- 208 (396)
+......+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+.. .
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 222556678899999999999999864 1111 35678899999999999999999999877541 1
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh-----CC
Q 041816 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD-----KN 283 (396)
Q Consensus 209 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~ 283 (396)
+....+++.+...|...|++++|...+++........+. .+....++..+...|...|++++|.+.|++..+ ..
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ-PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 112457888999999999999999999998764310000 011124788899999999999999999999876 32
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC
Q 041816 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ----GVQPDVVTFNVIMDELCKNGK---MDEASRLLELMILRGVNP 356 (396)
Q Consensus 284 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p 356 (396)
......++..+...+...|++++|...+++..+. +-+.....+..+...|...|+ +++|..++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 1334677899999999999999999999998753 111122345778888889999 77777777765 2233
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 357 -NTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 357 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
....+..+...|...|++++|.+.|++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345677888999999999999999999875
No 61
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=7.1e-12 Score=117.43 Aligned_cols=218 Identities=9% Similarity=0.041 Sum_probs=172.2
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCA-------ESRIM-------EAAALFTKLKAFGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 225 (396)
++..+|++.+... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5566777777653 3367788888888775 68877 8999999998632345688999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCcccccCCH-hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcCC
Q 041816 226 GHTIVALNLFEEMANGNGKFGVVCKPNT-VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG-FCYAND 303 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~ 303 (396)
|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|.++|++..+.... +...|...... +...|+
T Consensus 335 g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIE-------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp TCHHHHHHHHHHHHHSS-------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHhCcc-------ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCC
Confidence 99999999999999854 2333 58999999999999999999999999876322 33333332222 336899
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG-VNP--NTSTFSTLMDGFCLTGRVNHAKEL 380 (396)
Q Consensus 304 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~~ 380 (396)
+++|..+|+..++.. +-+...|..++..+.+.|+.++|..+|++....+ ..| ....|...+......|+.+.+..+
T Consensus 407 ~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~ 485 (530)
T 2ooe_A 407 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 485 (530)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998753 3357889999999999999999999999999863 233 255888888888899999999999
Q ss_pred HHHHHhC
Q 041816 381 FVSMESM 387 (396)
Q Consensus 381 ~~~m~~~ 387 (396)
++++.+.
T Consensus 486 ~~r~~~~ 492 (530)
T 2ooe_A 486 EKRRFTA 492 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998763
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.58 E-value=9.9e-14 Score=127.86 Aligned_cols=212 Identities=13% Similarity=0.016 Sum_probs=182.4
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHY-DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 165 (396)
+++|++.++......+ .+...|..+..++...|++ ++|++.|++..+.. +-+...|..+..+|...|++++|.+.|
T Consensus 84 ~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6777888887766443 5888999999999999999 99999999998764 235789999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc--------CCh
Q 041816 166 GRILRSCFTPDAVAFTSLIKGLCAE---------SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT--------GHT 228 (396)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~--------g~~ 228 (396)
++.++.. |+...+..+...|... |++++|+..|++..+.. +.+...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999875 5678999999999999 99999999999999875 44688999999999998 999
Q ss_pred HHHHHHHHHHHhcCCCCccccc---CCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 041816 229 IVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305 (396)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 305 (396)
++|+..|++..+.. + .+...|..+..+|...|++++|.+.|++..+.... +...+..+...+...|+++
T Consensus 238 ~~A~~~~~~al~~~-------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 238 QQALSAYAQAEKVD-------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHHHC-------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 99999999999864 3 57889999999999999999999999998876544 6667888888888888888
Q ss_pred HHHHHHH
Q 041816 306 EANCLLI 312 (396)
Q Consensus 306 ~a~~~~~ 312 (396)
+|...+.
T Consensus 310 eAi~~~~ 316 (474)
T 4abn_A 310 SLLESKG 316 (474)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 8876553
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=8.3e-13 Score=105.35 Aligned_cols=166 Identities=14% Similarity=0.071 Sum_probs=81.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
++..|..+..++...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 34455555555555555555555555554433 123444555555555555555555555555444322 3444444445
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
.+...++++.|...+.+..+.. +.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-------PGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-------chhhhHHHHHHHHHHH
Confidence 5555555555555555544432 2234444555555555555555555555554443 3344445555555555
Q ss_pred cCCHHHHHHHHHHHhh
Q 041816 266 EGFVDKAKELFLQMKD 281 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~ 281 (396)
.|++++|++.|++..+
T Consensus 154 ~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALE 169 (184)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5555555555555444
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=125.36 Aligned_cols=177 Identities=14% Similarity=0.040 Sum_probs=138.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc------
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-------GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS------ 171 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------ 171 (396)
....++..+...+...|++++|+.+++++.+. ........+..+...+...|++++|...+++.++.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 45677888999999999999999999998763 22334567888899999999999999999998764
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 041816 172 CF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF------GC-KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (396)
Q Consensus 172 ~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 243 (396)
+. +....++..+...|...|++++|...+++..+. +. +....++..+...+...|++++|+..++++.....
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 21 234677888999999999999999999988764 22 22456788899999999999999999999877510
Q ss_pred CC-cccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 244 KF-GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 244 ~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
.. +...+....++..+..+|...|++++|.+.++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 000123355788889999999999999999998875
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=9.2e-13 Score=105.08 Aligned_cols=163 Identities=13% Similarity=0.023 Sum_probs=66.6
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 041816 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222 (396)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 222 (396)
..|..+...+.+.|++++|++.|++.++..+. +..++..+..+|.+.|++++|...+.+..... +.+...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 34444444444444444444444444443322 34444444444444444444444444443332 12333333444444
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 041816 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302 (396)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 302 (396)
...++++.|...+++..... +.+...+..+..+|.+.|++++|++.|++..+.... +..+|..+..+|.+.|
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCC
Confidence 44444444444444444332 223334444444444444444444444444333221 3333344444444444
Q ss_pred CHHHHHHHHHHHH
Q 041816 303 DWNEANCLLIEMM 315 (396)
Q Consensus 303 ~~~~a~~~~~~~~ 315 (396)
++++|...|++.+
T Consensus 156 ~~~~A~~~~~~al 168 (184)
T 3vtx_A 156 LRDEAVKYFKKAL 168 (184)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444433
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.57 E-value=1.6e-13 Score=126.37 Aligned_cols=217 Identities=8% Similarity=-0.034 Sum_probs=185.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh-hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV-SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199 (396)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 199 (396)
+.++++++.+++..... +.+...+..+...+...|++ ++|++.|++.++.... +...|..+..+|...|++++|...
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34677888888776543 34788899999999999999 9999999999987643 688999999999999999999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhc---------CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc----
Q 041816 200 FTKLKAFGCKPNVITYSTLINGLCRT---------GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE---- 266 (396)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 266 (396)
|++..+.. |+..++..+...|... |++++|+..+++..+.. +.+...|..+..+|...
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-------VLDGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHhh
Confidence 99999874 6678899999999999 99999999999999875 56788999999999988
Q ss_pred ----CCHHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 041816 267 ----GFVDKAKELFLQMKDKNIN--PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340 (396)
Q Consensus 267 ----g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 340 (396)
|++++|++.|++..+.... -+...|..+..+|...|++++|...|+++.+.. +-+...+..+..++...|+++
T Consensus 231 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886431 278889999999999999999999999998753 334667888888888889888
Q ss_pred HHHHHHHHH
Q 041816 341 EASRLLELM 349 (396)
Q Consensus 341 ~A~~~~~~m 349 (396)
+|.+.+.++
T Consensus 310 eAi~~~~~~ 318 (474)
T 4abn_A 310 SLLESKGKT 318 (474)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHhccc
Confidence 888765443
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=2.7e-14 Score=123.86 Aligned_cols=245 Identities=14% Similarity=0.079 Sum_probs=173.8
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------C
Q 041816 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRS-------CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF------G 207 (396)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g 207 (396)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999999873 23345677889999999999999999999988764 2
Q ss_pred C-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-cccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC---
Q 041816 208 C-KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF-GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK--- 282 (396)
Q Consensus 208 ~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 282 (396)
. +....++..+...|...|++++|...++++.+..... +...+.....+..+...+...|++++|.++|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 2346778899999999999999999999987641000 0001334567888999999999999999999998764
Q ss_pred ---CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHhh-------HHHHHHHHHhcCCHHHHHH
Q 041816 283 ---NINP-DVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-------GVQPDVVT-------FNVIMDELCKNGKMDEASR 344 (396)
Q Consensus 283 ---~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~-------~~~l~~~~~~~g~~~~A~~ 344 (396)
+..| ...++..+...|...|++++|...++++.+. ...+.... +..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 3457888999999999999999999998853 11222222 2222333344455566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 345 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
.++..... .+....++..+..+|.+.|++++|.++|++..+
T Consensus 266 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666543 233567888999999999999999999999875
No 68
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.54 E-value=9.8e-12 Score=110.95 Aligned_cols=295 Identities=13% Similarity=0.104 Sum_probs=177.1
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH----HhHHHH
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPL----TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDL----YTYNIL 148 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~----~~~~~l 148 (396)
+..+...|++++|+..+++.+...+. .+. ..++.+...+...|++++|.+.+++...... ..+. .++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34456678888888888887765543 222 2455666667777888888888777654210 0121 234556
Q ss_pred HHHHHhcCChhhHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----ccHHHHHH
Q 041816 149 INCFCKMGRVSHGFVVLGRILRS----CFT--P-DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK----PNVITYST 217 (396)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~----~~~~~~~~ 217 (396)
...+...|++++|...+++.++. +.. | ....+..+...+...|++++|...+++..+.... ....++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66677778888888877777653 111 2 2345556677777778888888888776654211 12345667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCH-hhHH-----HHHHHHhccCCHHHHHHHHHHHhhCCCCCC---h
Q 041816 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT-VTYT-----TIIDGLCKEGFVDKAKELFLQMKDKNINPD---V 288 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~ 288 (396)
+...+...|++++|...+++...... .++. ..+. ..+..+...|++++|...+++.......+. .
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLG------NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHT------TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHh------ccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 77777778888888888887776532 1111 1121 223346677888888888777765432211 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 041816 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQ----GVQPDV-VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363 (396)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 363 (396)
..+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..... +. ..
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g 327 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TG 327 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----cc
Confidence 23556667777778888888877776532 211222 255556667777788888888777777641 00 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 364 LMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 364 li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.+..+...| +....+++.+...
T Consensus 328 ~~~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 328 FISHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp CCHHHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHHHHcc--HHHHHHHHHHHhC
Confidence 223344444 5566666666654
No 69
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.54 E-value=4.8e-12 Score=124.91 Aligned_cols=252 Identities=13% Similarity=0.118 Sum_probs=175.6
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 157 (396)
+..+...|.+++|+.+|++.. ......+.++. ..+++++|.++.++. -+..+|..+..++.+.|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 444566788999999999862 12222233322 567888888888755 246778888888888899
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041816 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 237 (396)
+++|++.|.+. -|...|..++.+|.+.|++++|.+++...++.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 99888888653 367778888888888899999998888777654 33333445888888888877533332
Q ss_pred HHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
. .++...|..+...|...|++++|..+|... ..|..+...+++.|++++|.+.+++.
T Consensus 1191 --~---------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--- 1247 (1630)
T 1xi4_A 1191 --N---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--- 1247 (1630)
T ss_pred --h---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh---
Confidence 1 245566777888888888888888888874 36888888888888888888888766
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
-+..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...
T Consensus 1248 ---~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1248 ---NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred ---CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 24466666666666666666666654432 2345555666666666677766666665554
No 70
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.53 E-value=9.1e-12 Score=123.00 Aligned_cols=251 Identities=12% Similarity=0.104 Sum_probs=199.8
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
..+++++|.++.+++ .+..+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.
T Consensus 1088 ~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHH
Confidence 445677777777755 46788999999999999999999999764 37788899999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
+.+....+.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|..+
T Consensus 1155 eyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---- 1221 (1630)
T 1xi4_A 1155 KYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 1221 (1630)
T ss_pred HHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Confidence 9999888765 33333445999999999998644443 2 346677888999999999999999999984
Q ss_pred CCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 041816 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 322 (396)
..|..+...|.+.|++++|.+.+++.. +..+|..+..+|...|++..|......+ ..+
T Consensus 1222 -----------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~ 1279 (1630)
T 1xi4_A 1222 -----------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 1279 (1630)
T ss_pred -----------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcC
Confidence 368999999999999999999998873 6789999999999999999998876643 345
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 041816 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT--GRVNHAKELFV 382 (396)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~ 382 (396)
...+..++..|.+.|.+++|+.+++...... +-....|+-+..+|++- ++..++.++|.
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6677799999999999999999998887542 33445666666666653 45555555554
No 71
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=4.3e-12 Score=116.14 Aligned_cols=279 Identities=11% Similarity=-0.009 Sum_probs=135.9
Q ss_pred cCCCCccccCCh---hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCCCHHhHHH
Q 041816 76 SSGQGDITAITP---NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK-----HYDTVLSLFKRLNSTGLFPDLYTYNI 147 (396)
Q Consensus 76 ~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~ 147 (396)
.++..+...|++ ++|+..|++..+. ++..+..+...+...+ ++++|+..|++..+.|. ...+..
T Consensus 40 ~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~ 111 (452)
T 3e4b_A 40 GLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIP 111 (452)
T ss_dssp TCC---------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHH
T ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHH
Confidence 455556667777 8999999988753 4556677777555554 78899999999988763 235666
Q ss_pred HHHHHHhcCChh---hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 148 LINCFCKMGRVS---HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR----IMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 148 li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
|...|...+..+ ++.+.+......| +...+..+...|...+. .+.+..+++..... +...+..+..
T Consensus 112 Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~ 184 (452)
T 3e4b_A 112 LAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT----TDICYVELAT 184 (452)
T ss_dssp HHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHH
Confidence 666666655433 3444444444433 23344445555555553 33333333333221 2225556666
Q ss_pred HHHhcC---ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc----CCHHHHHHHHHHHhhCCCCCChhhHHH
Q 041816 221 GLCRTG---HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE----GFVDKAKELFLQMKDKNINPDVVTYNS 293 (396)
Q Consensus 221 ~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~ 293 (396)
.|...| +.++|++.|++..+.+ +++...+..|...|... +++++|.+.|+... .| +...+..
T Consensus 185 ~~~~~g~~~~~~~A~~~~~~aa~~g-------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~ 253 (452)
T 3e4b_A 185 VYQKKQQPEQQAELLKQMEAGVSRG-------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS 253 (452)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTT-------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred HHHHcCCcccHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence 666666 6666666666666655 34444445555555443 56666666666655 22 4444455
Q ss_pred HHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041816 294 LIHG-F--CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG-----KMDEASRLLELMILRGVNPNTSTFSTLM 365 (396)
Q Consensus 294 li~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li 365 (396)
+... + ...+++++|...|++..+.| +...+..|...|. .| +.++|.+.|++.. . -+...+..|.
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg 325 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLG 325 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHH
Confidence 5444 2 34556666666666666544 4444555555554 33 5666666665555 2 2444455555
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCC
Q 041816 366 DGFCL----TGRVNHAKELFVSMESMG 388 (396)
Q Consensus 366 ~~~~~----~g~~~~A~~~~~~m~~~g 388 (396)
..|.. ..++++|..+|++..+.|
T Consensus 326 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 326 QIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 44443 225566666665555444
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.51 E-value=1.6e-11 Score=109.58 Aligned_cols=274 Identities=10% Similarity=-0.011 Sum_probs=150.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-CC----HHHH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY----TYNILINCFCKMGRVSHGFVVLGRILRSCFT-PD----AVAF 180 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~ 180 (396)
+......+...|++++|...+++........+.. .+..+...+...|++++|...+++..+.... .+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4445556667788888888887776643222221 3455666677778888888777776642110 11 2335
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--c-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCH
Q 041816 181 TSLIKGLCAESRIMEAAALFTKLKAF----GCK--P-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253 (396)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (396)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........+.......
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56667777778888888777776543 211 2 2345566777777788888888887776654433221111222
Q ss_pred hhHHHHH-HHHhccC----CHHHHHHHHHHHhhCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---H
Q 041816 254 VTYTTII-DGLCKEG----FVDKAKELFLQMKDKNINPDVVTY--NSLIHGFCYANDWNEANCLLIEMMDQGVQPD---V 323 (396)
Q Consensus 254 ~~~~~li-~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~ 323 (396)
......+ ....+.. .++++.++. ...+..+..... ...+..+...|++++|...+.+.......+. .
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLL---GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH---TTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH---hccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 2111111 1111111 122333322 222221111111 1233446677888888887777664321111 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 324 VTFNVIMDELCKNGKMDEASRLLELMILR----GVNPNT-STFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
..+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 24556677777778888888777766542 222222 2555566677777888888877776653
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=2.5e-12 Score=123.43 Aligned_cols=169 Identities=12% Similarity=0.051 Sum_probs=150.0
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHH
Q 041816 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182 (396)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (396)
.|.+..+|+.|..++.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++.++.... +...|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 34578899999999999999999999999998864 235788999999999999999999999999987644 7889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHH
Q 041816 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262 (396)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 262 (396)
+..+|.+.|++++|++.|++..+.. +-+..+|+.+..+|...|++++|++.|++..+.. +.+...+..+..+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-------PDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHhhhhhH
Confidence 9999999999999999999999875 4468899999999999999999999999999875 5678899999999
Q ss_pred HhccCCHHHHHHHHHHHhh
Q 041816 263 LCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~ 281 (396)
+...|++++|.+.+++..+
T Consensus 155 l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 9999999999999888753
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=8.2e-12 Score=111.72 Aligned_cols=299 Identities=8% Similarity=-0.057 Sum_probs=205.2
Q ss_pred ccCChhHHHHHHHHHHhcCC---CCCCHhhHHHHHHHH--HhcCChhHHH---------HHHHHHHhCCCCCCH----Hh
Q 041816 83 TAITPNEAFCIFDYMLNMRP---SPPPLTSFNLLFGCL--AKTKHYDTVL---------SLFKRLNSTGLFPDL----YT 144 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~~~a~---------~~~~~~~~~~~~p~~----~~ 144 (396)
..++.++|..+++.+.+... ...++..|-.++..- .-.+.+..+. +.++.+.......+. ..
T Consensus 24 ~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~ 103 (378)
T 3q15_A 24 RQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYS 103 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHH
Confidence 45679999999998755321 113344444444331 1123333333 666665432111111 12
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-C-ccHH
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILRSCF-TP----DAVAFTSLIKGLCAESRIMEAAALFTKLKAF----GC-K-PNVI 213 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~-~-~~~~ 213 (396)
+......+...|++++|+..+++..+... .+ ...++..+...|...|+++.|...+++..+. +. . ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 23344556789999999999999986421 11 3567888999999999999999999987653 11 1 1256
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh-----CCCCCCh
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD-----KNINPDV 288 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~ 288 (396)
+++.+...|...|++++|...+++........+. ......++..+..+|...|++++|.+.|++..+ .... ..
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~ 261 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN-DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LP 261 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HH
Confidence 7888999999999999999999988764210000 111245788899999999999999999999876 4333 36
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHH
Q 041816 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQG----VQPDVVTFNVIMDELCKNGK---MDEASRLLELMILRGVNP-NTST 360 (396)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p-~~~~ 360 (396)
.++..+...+.+.|++++|...+++..+.. -+.....+..+...|...|+ +.+|...+++. +..+ ....
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~ 338 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHH
Confidence 788899999999999999999999988642 12223456667777778888 77777777663 2222 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 361 FSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 361 ~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
+..+...|...|++++|.+.|++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67888999999999999999998764
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.46 E-value=1.1e-11 Score=98.42 Aligned_cols=166 Identities=16% Similarity=0.130 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhH
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 291 (396)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|.+.++++.+.... +...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 79 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVA 79 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 4556777888888899999999888887654 456778888888999999999999999988776433 67788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 041816 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371 (396)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 371 (396)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-RPNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHc
Confidence 888888999999999999999888753 446778888888999999999999999998876 345678888899999999
Q ss_pred CCHHHHHHHHHHHHhC
Q 041816 372 GRVNHAKELFVSMESM 387 (396)
Q Consensus 372 g~~~~A~~~~~~m~~~ 387 (396)
|++++|.+.+++..+.
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999988764
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.46 E-value=1.3e-11 Score=98.04 Aligned_cols=166 Identities=17% Similarity=0.047 Sum_probs=132.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (396)
...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4567777788888899999999988887653 34677788888888888999999998888887643 367788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-------PNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHc
Confidence 888899999999888887764 4467778888888888899999999888888764 45677888888888888
Q ss_pred CCHHHHHHHHHHHhhC
Q 041816 267 GFVDKAKELFLQMKDK 282 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~ 282 (396)
|++++|.+.+++..+.
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 8888888888887654
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=6.9e-12 Score=120.36 Aligned_cols=166 Identities=15% Similarity=0.114 Sum_probs=149.2
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
+...|+.+...+.+.|++++|++.|++.++.... +..++..+..+|.+.|++++|+..|++..+.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4678999999999999999999999999987644 78899999999999999999999999999875 346889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 300 (396)
+|...|++++|++.|++..+.. +.+...|+.+..+|.+.|++++|++.|++..+.... +...|..+...+..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-------PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHh
Confidence 9999999999999999999875 567889999999999999999999999999887544 67889999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q 041816 301 ANDWNEANCLLIEMMD 316 (396)
Q Consensus 301 ~~~~~~a~~~~~~~~~ 316 (396)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999999888764
No 78
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=3.9e-11 Score=109.85 Aligned_cols=276 Identities=10% Similarity=0.000 Sum_probs=184.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD---TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
+++++|+..|++..+.+. ...+..|...|...+..+ ++.+.+......| +...+..+...|...+.++++
T Consensus 88 ~~~~~A~~~~~~Aa~~g~----~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE----GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC----SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred cCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 468899999999988553 236777777777655433 4555555555444 345566677777777766655
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc----CChHHHHHH
Q 041816 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAES---RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT----GHTIVALNL 234 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~----g~~~~a~~~ 234 (396)
......+.+.-...+...+..|...|...| +.++|+..|++..+.| +++...+..+...|... ++.++|+.+
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 554333333211223337777788888888 8888888888888877 44555556666666554 688888888
Q ss_pred HHHHHhcCCCCcccccCCHhhHHHHHHH-H--hccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-----CHHH
Q 041816 235 FEEMANGNGKFGVVCKPNTVTYTTIIDG-L--CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN-----DWNE 306 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-----~~~~ 306 (396)
|++.. .+ +...+..|... + ...+++++|.+.|++..+.| +...+..|...|. .| ++++
T Consensus 240 ~~~aa-~g---------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 240 LEKIA-PG---------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHG-GG---------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHc-CC---------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 88876 43 44556666665 3 45788888888888887776 6667777777776 44 8888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 041816 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCK----NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL----TGRVNHAK 378 (396)
Q Consensus 307 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 378 (396)
|...|++.. . -+...+..|...|.. ..+.++|...|++..+.|. ......|...|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 888888776 3 355666667666665 3488888888888887653 3444555555543 35788888
Q ss_pred HHHHHHHhCCC
Q 041816 379 ELFVSMESMGC 389 (396)
Q Consensus 379 ~~~~~m~~~g~ 389 (396)
.+|+...+.|.
T Consensus 379 ~~~~~A~~~g~ 389 (452)
T 3e4b_A 379 VFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHCCC
Confidence 88887777663
No 79
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=8.2e-12 Score=111.93 Aligned_cols=235 Identities=11% Similarity=-0.051 Sum_probs=177.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC------CCCHHHHH
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNST----GLFP-DLYTYNILINCFCKMGRVSHGFVVLGRILRSCF------TPDAVAFT 181 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~ 181 (396)
....+...|++++|++.+++..+. +-.+ ...++..+...+...|++++|...+.+.++... .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566678899999999999999764 1111 245788899999999999999999999876311 11246788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhH
Q 041816 182 SLIKGLCAESRIMEAAALFTKLKAF----GCKP-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256 (396)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
.+...|...|++++|...+++..+. +..+ ...++..+..+|...|++++|...+++........+. .+....++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI-LPSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-chhHHHHH
Confidence 8999999999999999999987754 1111 1347888999999999999999999998773100000 13346778
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhC----CCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HhhHHH
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMKDK----NINPDVVTYNSLIHGFCYAND---WNEANCLLIEMMDQGVQPD-VVTFNV 328 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~ 328 (396)
..+...|.+.|++++|.+.+++..+. +-......+..+...+...|+ +++|..++++. +..|+ ...+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 99999999999999999999987653 111122335678888888898 77777777665 22333 446778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 041816 329 IMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 329 l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
+...|...|++++|...+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999998875
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=2.5e-11 Score=100.29 Aligned_cols=197 Identities=11% Similarity=-0.007 Sum_probs=156.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
.++..+......+...|++++|++.|++..+....++...+..+..++...|++++|+..+++.++..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4678888899999999999999999999988664367788888999999999999999999999987644 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccC--CHhh
Q 041816 185 KGLCAESRIMEAAALFTKLKAFGCKPNV-------ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP--NTVT 255 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~ 255 (396)
..|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|+..|+++.+.. +. +...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~ 155 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-------SKKWKTDA 155 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-------CHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-------CCcccHHH
Confidence 99999999999999999998864 2344 568888889999999999999999998864 33 4677
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041816 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318 (396)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (396)
|..+..+|...| ..+++++...+.. +...|..... ...+.+++|...+++..+..
T Consensus 156 ~~~l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 156 LYSLGVLFYNNG-----ADVLRKATPLASS-NKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 888888876544 4445555554322 3444444433 34567899999999998753
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.42 E-value=5.1e-12 Score=107.73 Aligned_cols=139 Identities=13% Similarity=0.033 Sum_probs=88.0
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------C-C
Q 041816 143 YTYNILINCFCKMGRVSHGFVVLGRILRS------CF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF------G-C 208 (396)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g-~ 208 (396)
.++..+...+...|++++|...+++.++. +- +....++..+...|...|++++|...+++..+. . .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444555555555555555555555432 11 123445666666777777777777777666543 1 1
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-cccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF-GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 209 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
+....++..+...|...|++++|...++++....... +...+....++..+...|...|++++|.+.+++..+
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345677788888888888888888888877641000 000123456788899999999999999999998865
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.41 E-value=5.8e-12 Score=107.36 Aligned_cols=234 Identities=13% Similarity=0.047 Sum_probs=160.5
Q ss_pred HhcCChhhHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CccHHHHHHH
Q 041816 153 CKMGRVSHGFVVLGRILRS-------CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF------GC-KPNVITYSTL 218 (396)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~l 218 (396)
...|++++|+..+++.++. ..+....++..+...|...|++++|+..+++..+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666676666666542 22335678889999999999999999999988765 22 2346688999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCc-ccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC------CCCC-Chhh
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFG-VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK------NINP-DVVT 290 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~ 290 (396)
...|...|++++|...++++........ ...+....++..+...|...|++++|.+.|++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999999876510000 001334678889999999999999999999998764 1122 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-hhHHHHHHHHHhcCCHHH------HHHHHHHHHhCCCCC
Q 041816 291 YNSLIHGFCYANDWNEANCLLIEMMDQ-------GVQPDV-VTFNVIMDELCKNGKMDE------ASRLLELMILRGVNP 356 (396)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~------A~~~~~~m~~~g~~p 356 (396)
+..+...|...|++++|...++++.+. ...+.. ..+..+...+...+.... +...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998853 122332 233333333333333222 2222222111 1122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 357 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
...++..+...|...|++++|.++|++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888999999999999999999998753
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.38 E-value=1.1e-10 Score=96.42 Aligned_cols=195 Identities=13% Similarity=-0.001 Sum_probs=141.8
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 041816 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219 (396)
Q Consensus 140 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 219 (396)
.|+..+......+...|++++|+..|++.++...+++...+..+..++...|++++|+..|++..+.. +.+..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677888888888999999999999998887654677777778888889999999999999888764 33677888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcccccCCH-------hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC---hh
Q 041816 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT-------VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD---VV 289 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~ 289 (396)
.+|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.|++..+. .|+ ..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 154 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-------PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTD 154 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHH
Confidence 89999999999999999888764 3444 45777778888888888888888888775 333 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
.|..+...|... +..+++++...+ ..+...|.... ....+.+++|...+++..+.
T Consensus 155 ~~~~l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 155 ALYSLGVLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666666666543 334445554432 22333443333 23345678888888888774
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=9.1e-11 Score=104.91 Aligned_cols=234 Identities=10% Similarity=-0.035 Sum_probs=169.6
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CC-CHHhHHHH
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPP----PLTSFNLLFGCLAKTKHYDTVLSLFKRLNST----GL-FP-DLYTYNIL 148 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p-~~~~~~~l 148 (396)
..+...|++++|+..|+++.+.....+ ...++..+..++...|++++|+..+++..+. +- .+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345667899999999999986532212 3457888999999999999999999987652 11 11 24567888
Q ss_pred HHHHHhcCChhhHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCccHHHHHHHH
Q 041816 149 INCFCKMGRVSHGFVVLGRILRS----CFT-PDAVAFTSLIKGLCAESRIMEAAALFTKLKAF----GCKPNVITYSTLI 219 (396)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~~~~~~~~ll 219 (396)
..+|...|++++|.+.+.+.++. +.. ....++..+..+|...|++++|+..+++..+. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 99999999999999999988763 111 12457888999999999999999999998762 2233477888999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC---HHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041816 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF---VDKAKELFLQMKDKNINPDVVTYNSLIH 296 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~ 296 (396)
..|.+.|++++|...+++........+ .+.....+..+...|...++ +.+|+..+++... .......+..+..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~ 344 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARS--HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAAA 344 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTC--CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHHH
Confidence 999999999999999999887642211 11223455666677777788 7777777766321 1112335566777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 041816 297 GFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 297 ~~~~~~~~~~a~~~~~~~~~ 316 (396)
.|...|++++|...|++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 77778888888877777654
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.31 E-value=1.2e-09 Score=92.56 Aligned_cols=179 Identities=8% Similarity=0.017 Sum_probs=92.9
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
|+..+++.++.+ .++...+..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 23444444566666666666666666666555432 1245555666666666666666666666665
Q ss_pred hcCCCCcccccC-----CHhhHHHHHHHHh--c--cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 041816 240 NGNGKFGVVCKP-----NTVTYTTIIDGLC--K--EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310 (396)
Q Consensus 240 ~~~~~~~~~~~~-----~~~~~~~li~~~~--~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 310 (396)
+. .| +..+...|+.++. . .+++.+|..+|+++.+.. |+..+...++.++.+.|++++|...
T Consensus 164 ~~--------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 164 NA--------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp HH--------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hc--------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHH
Confidence 53 24 2334444443322 1 226666666666665432 2322233333356666666666666
Q ss_pred HHHHHHC-----C----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 311 LIEMMDQ-----G----VQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 311 ~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
++.+.+. . -+-|..++..+|......|+ +|.++++++.+.
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 6654432 0 02234444444444444554 566666666653
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.30 E-value=2.4e-10 Score=98.28 Aligned_cols=212 Identities=9% Similarity=0.021 Sum_probs=150.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 041816 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS----CFTP-DAVAFTSLIKGLCAESRIMEA 196 (396)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a 196 (396)
++++|.+.|++. ...|...|++++|.+.|.+..+. |-.+ ...+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477888877776 33566788888888888877653 2111 256788888899999999999
Q ss_pred HHHHHHHHhc----CCCc-cHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHH
Q 041816 197 AALFTKLKAF----GCKP-NVITYSTLINGLCRT-GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270 (396)
Q Consensus 197 ~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (396)
+..|++..+. |-.. -..+++.+...|... |++++|+..|++........+. ......++..+...+.+.|+++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhCCHH
Confidence 9888887654 2111 145788899999996 9999999999998775310000 0001356888999999999999
Q ss_pred HHHHHHHHHhhCCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hhHHHHHHHHH--hc
Q 041816 271 KAKELFLQMKDKNINPDVV------TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV------VTFNVIMDELC--KN 336 (396)
Q Consensus 271 ~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~ 336 (396)
+|+..|++..+........ .|..+..++...|++++|...+++..+. .|+. ..+..++.+|. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 9999999998865442221 5677888899999999999999998763 3332 13445566664 45
Q ss_pred CCHHHHHHHHHHHHh
Q 041816 337 GKMDEASRLLELMIL 351 (396)
Q Consensus 337 g~~~~A~~~~~~m~~ 351 (396)
+++++|...|+.+..
T Consensus 254 ~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhccCCc
Confidence 678888888877654
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.26 E-value=3e-10 Score=97.64 Aligned_cols=238 Identities=13% Similarity=0.047 Sum_probs=166.9
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc--C-ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041816 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKM--G-RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201 (396)
Q Consensus 125 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 201 (396)
+|.+++.+..+.- ++....| .+ .+. + ++++|...|.+. ...|...|++++|...|+
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 4667777765542 2221222 22 232 2 488888888776 446778899999999999
Q ss_pred HHHhc----CCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc-CCHHHHHHH
Q 041816 202 KLKAF----GCKPN-VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE-GFVDKAKEL 275 (396)
Q Consensus 202 ~~~~~----g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~ 275 (396)
+..+. |.+++ ..+|+.+..+|.+.|++++|+..+++........+. ...-..+++.+..+|... |++++|+..
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-FRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 87654 32222 568999999999999999999999988764310000 001145788899999996 999999999
Q ss_pred HHHHhhCCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHhcCCHHHHHH
Q 041816 276 FLQMKDKNINP-D----VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV------VTFNVIMDELCKNGKMDEASR 344 (396)
Q Consensus 276 ~~~m~~~~~~p-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~ 344 (396)
|++..+..... + ..++..+...+...|++++|...|+++.+....... ..|..+..++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987532110 1 356888999999999999999999999986432222 156778888999999999999
Q ss_pred HHHHHHhCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 041816 345 LLELMILRGVNPNT------STFSTLMDGFC--LTGRVNHAKELFVSMES 386 (396)
Q Consensus 345 ~~~~m~~~g~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 386 (396)
.|++..+. .|+. ..+..++.++. ..+++++|++.|+++..
T Consensus 221 ~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 221 TLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 99998863 3332 23455666664 45779999998877654
No 88
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.24 E-value=1.3e-08 Score=87.11 Aligned_cols=229 Identities=8% Similarity=0.001 Sum_probs=160.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hhc---CCH
Q 041816 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG--RVSHGFVVLGRILRSCFTPDAVAFTSLIKGL----CAE---SRI 193 (396)
Q Consensus 123 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 193 (396)
.++|+++++.++..+. -+...|+.--..+...| ++++++++++.++...+. +..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 4567777777766441 23445666666666666 777777777777776544 455555544444 444 678
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChH--HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC---
Q 041816 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI--VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF--- 268 (396)
Q Consensus 194 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 268 (396)
++++.+++++.+.. +.+-.+|+.-...+.+.|.++ ++++.++++.+.+ +.|...|+.-.....+.+.
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-------~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-------LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHSSGGGCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhccccch
Confidence 88888888888765 457788888777778888877 8888888888876 5677888877777777666
Q ss_pred ---HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHH
Q 041816 269 ---VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE-ANCLLIEMMDQG--VQPDVVTFNVIMDELCKNGKMDEA 342 (396)
Q Consensus 269 ---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 342 (396)
++++++.++++....+. |...|+.+-..+.+.|+..+ +..+..++.+.+ -..+...+..+++.|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 88899999988887666 88888888888888877444 445666555432 134667888888889899999999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHH
Q 041816 343 SRLLELMILRGVNP-NTSTFST 363 (396)
Q Consensus 343 ~~~~~~m~~~g~~p-~~~~~~~ 363 (396)
.++++.+.+. ..| ....|..
T Consensus 278 ~~~~~~l~~~-~Dpir~~yW~~ 298 (306)
T 3dra_A 278 RTVYDLLKSK-YNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHHT-TCGGGHHHHHH
T ss_pred HHHHHHHHhc-cChHHHHHHHH
Confidence 9999998864 233 3444443
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.23 E-value=1.2e-10 Score=112.22 Aligned_cols=174 Identities=8% Similarity=-0.080 Sum_probs=147.3
Q ss_pred cccCChhHHHHHHHHHH--------hcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041816 82 ITAITPNEAFCIFDYML--------NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 153 (396)
...|++++|++.+++++ +..+ .+...|..+..++.+.|++++|++.|+++.+.+ +-+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS--ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc--cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 56789999999999998 5433 577889999999999999999999999998764 336788999999999
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHH
Q 041816 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 233 (396)
..|++++|++.|++.++..+. +...+..+..+|.+.|++++ +..|++..+.. +.+...|..+..++.+.|++++|++
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999988644 67888999999999999999 99999998875 4478899999999999999999999
Q ss_pred HHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
.|+++.+.. +.+...+..+..++...++
T Consensus 556 ~~~~al~l~-------P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTS-------RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTS-------TTHHHHHHHHHHHTC----
T ss_pred HHHhhcccC-------cccHHHHHHHHHHHHccCC
Confidence 999998764 4456788888888877555
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=3e-09 Score=90.21 Aligned_cols=181 Identities=9% Similarity=0.002 Sum_probs=116.2
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204 (396)
Q Consensus 126 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 204 (396)
|+..+++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666777666544 34555666777778888888888888888766653 2366777778888888888888888888887
Q ss_pred hcCCCc-----cHHHHHHHHHHHH--hcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041816 205 AFGCKP-----NVITYSTLINGLC--RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277 (396)
Q Consensus 205 ~~g~~~-----~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 277 (396)
+. .| +..+...++.++. ..|.- ...+-|.-..+... ..|+..+-..++.++.+.|++++|.+.++
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~-~~q~A~~~f~El~~-----~~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKE-TATSNFYYYEELSQ-----TFPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCS-TTTHHHHHHHHHHT-----TSCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHH-----hCCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 75 45 3555566666633 34442 34444555544332 23443344445557788888888888888
Q ss_pred HHhhCC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 278 QMKDKN---------INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 278 ~m~~~~---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
.+.+.. -+-+..++..+|......|+ +|.+++.++.+.
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 665421 02256666566555556675 777888888774
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.22 E-value=1.3e-09 Score=81.32 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 041816 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169 (396)
Q Consensus 111 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 169 (396)
..+...+...|++++|+++++++.+.+ +.+...+..+...+...|++++|..+++++.
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 62 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333344444444444444444443322 1123333333333333444444444444333
No 92
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.22 E-value=3.9e-09 Score=85.99 Aligned_cols=176 Identities=14% Similarity=-0.040 Sum_probs=95.7
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC----ChHHHHHHH
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG----HTIVALNLF 235 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~ 235 (396)
+|++.|.+..+.| +...+..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3445555555443 44555555555555566666666666655543 34445555555555 4 566666666
Q ss_pred HHHHhcCCCCcccccCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHh----cCCHHH
Q 041816 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCK----EGFVDKAKELFLQMKDKNIN-PDVVTYNSLIHGFCY----ANDWNE 306 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~~~~~~ 306 (396)
++..+.+ +...+..|...|.. .+++++|+++|++..+.+.. .+...+..|...|.. .+++++
T Consensus 77 ~~A~~~g---------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 77 EKAVEAG---------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHTT---------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHCC---------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 6655433 34455555555555 55666666666666555421 014555555555555 556666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 041816 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKN-G-----KMDEASRLLELMILRG 353 (396)
Q Consensus 307 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g 353 (396)
|...|++..+. ..+...+..|..+|... | +.++|...|+...+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66666666654 12333445555555432 2 5666666666666554
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.22 E-value=2.5e-10 Score=109.95 Aligned_cols=174 Identities=8% Similarity=-0.091 Sum_probs=145.4
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041816 118 AKTKHYDTVLSLFKRLN--------STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189 (396)
Q Consensus 118 ~~~~~~~~a~~~~~~~~--------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (396)
...|++++|++.+++.. +.. +.+...+..+..++.+.|++++|++.+++.++.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999998 432 345677888899999999999999999999987543 78899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCH
Q 041816 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269 (396)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (396)
.|++++|+..|++..+.. +.+...|..+..+|.+.|++++ ++.|+++.+.+ +.+...|..+..++.+.|++
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------CchHHHHHHHHHHHHHcCCH
Confidence 999999999999998875 3467888999999999999999 99999999875 56788999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 041816 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303 (396)
Q Consensus 270 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 303 (396)
++|.+.|++..+.+.. +...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9999999998876433 46677777777766554
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.22 E-value=1.3e-09 Score=81.33 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=34.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 041816 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 227 (396)
+...+...|++++|..+++++.+... .+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcC
Confidence 33334444444444444444433321 123333333333444444444444444433332 1223333333333344444
Q ss_pred hHHHHHHHHHHH
Q 041816 228 TIVALNLFEEMA 239 (396)
Q Consensus 228 ~~~a~~~~~~~~ 239 (396)
+++|...++++.
T Consensus 85 ~~~A~~~~~~~~ 96 (136)
T 2fo7_A 85 YDEAIEYYQKAL 96 (136)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.21 E-value=1.2e-09 Score=92.16 Aligned_cols=100 Identities=11% Similarity=-0.017 Sum_probs=54.3
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CccHHHHH
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD---AVAFTSLIKGLCAESRIMEAAALFTKLKAFGC--KPNVITYS 216 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~ 216 (396)
...+..+...+.+.|++++|+..|+.+++..+. + ...+..+..+|.+.|++++|+..|++..+... +....++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 334444444555555555555555555554321 2 44555555556666666666666666555421 11234455
Q ss_pred HHHHHHHh--------cCChHHHHHHHHHHHhcC
Q 041816 217 TLINGLCR--------TGHTIVALNLFEEMANGN 242 (396)
Q Consensus 217 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~ 242 (396)
.+..++.. .|++++|+..|+++....
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 55555665 677777777777776653
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.21 E-value=1.2e-09 Score=88.76 Aligned_cols=137 Identities=11% Similarity=0.008 Sum_probs=102.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041816 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 296 (396)
.+..+|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..+..+. +...|..+..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 130 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGN 130 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 38889999999999999999999875 567889999999999999999999999999887654 6778888888
Q ss_pred HHHhcCC--HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041816 297 GFCYAND--WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365 (396)
Q Consensus 297 ~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 365 (396)
.|...|+ ...+...+..... ..|....+.....++...|++++|...|++.++ +.|+......+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 131 YYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 8766554 3445555555432 223333444456667778999999999999987 467765544443
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=1.5e-08 Score=86.59 Aligned_cols=220 Identities=13% Similarity=0.023 Sum_probs=181.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH----Hhc---C
Q 041816 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK--HYDTVLSLFKRLNSTGLFPDLYTYNILINCF----CKM---G 156 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~----~~~---g 156 (396)
..++|+++++.++...|. ...+|+.-..++...+ ++++++++++.+...+. -+..+|+.--..+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINELAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccC
Confidence 357899999999998775 8889999999999888 99999999999988653 3556677655555 555 7
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC------h
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM--EAAALFTKLKAFGCKPNVITYSTLINGLCRTGH------T 228 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~------~ 228 (396)
++++++++++.+++.... +..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|..+|+.....+...+. +
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 899999999999998754 8889988888888889888 9999999999886 4588899888888888877 8
Q ss_pred HHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHH-HHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCCHH
Q 041816 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK-AKELFLQMKDKN--INPDVVTYNSLIHGFCYANDWN 305 (396)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~ 305 (396)
+++++.++.+.... +-|...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.+
T Consensus 203 ~eEl~~~~~aI~~~-------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 203 DEELNYVKDKIVKC-------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhC-------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 89999999999876 7789999999998888887444 555666665533 1237788999999999999999
Q ss_pred HHHHHHHHHHHC
Q 041816 306 EANCLLIEMMDQ 317 (396)
Q Consensus 306 ~a~~~~~~~~~~ 317 (396)
+|.++++.+.+.
T Consensus 276 ~A~~~~~~l~~~ 287 (306)
T 3dra_A 276 ESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999999863
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.19 E-value=2e-09 Score=90.76 Aligned_cols=172 Identities=11% Similarity=0.011 Sum_probs=134.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccC
Q 041816 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN---VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251 (396)
Q Consensus 175 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (396)
.+...+-.+...+.+.|++++|+..|+++.+.. +.+ ..++..+..+|.+.|++++|+..|+++...... .+.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~----~~~ 87 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI----DPR 87 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CTT
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC----Cch
Confidence 466777788889999999999999999999874 223 678889999999999999999999999986410 012
Q ss_pred CHhhHHHHHHHHhc--------cCCHHHHHHHHHHHhhCCCCCChhhH-----------------HHHHHHHHhcCCHHH
Q 041816 252 NTVTYTTIIDGLCK--------EGFVDKAKELFLQMKDKNINPDVVTY-----------------NSLIHGFCYANDWNE 306 (396)
Q Consensus 252 ~~~~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~~~~~~ 306 (396)
....+..+..++.. .|++++|...|+++.+.... +.... ..+...|...|++++
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 24567788888888 99999999999999876433 33333 456778889999999
Q ss_pred HHHHHHHHHHCCCCC--CHhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 041816 307 ANCLLIEMMDQGVQP--DVVTFNVIMDELCKN----------GKMDEASRLLELMILR 352 (396)
Q Consensus 307 a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 352 (396)
|...|+++++..... ....+..+..+|... |++++|...|+++.+.
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 999999988753111 234667777777765 8889999999988875
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.19 E-value=1.4e-09 Score=88.35 Aligned_cols=187 Identities=10% Similarity=0.017 Sum_probs=108.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
+..+......+...|++++|+..|++..+.. |+. ..|.. ...... ..........+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~-----~~~~~~--------------~~~~~~~~~~lg~ 62 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYW-----TNVDKN--------------SEISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHH-----HHSCTT--------------SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHH-----hhhcch--------------hhhhHHHHHHHHH
Confidence 3444445556677788888888888776642 332 22222 000000 0011222334677
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
+|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++..+.. |.+..+|..+..+|..
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-------ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHH
Confidence 7777777788877777777764 3356777777777777788888888887777764 4556677777776655
Q ss_pred cCC--HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 041816 266 EGF--VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326 (396)
Q Consensus 266 ~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 326 (396)
.|+ .+.+...++.... ..|....+.....++...|++++|...|++.++. .|+....
T Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 443 3344444444432 1222223344455556677788888888877764 4665433
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.19 E-value=5.5e-09 Score=85.08 Aligned_cols=178 Identities=11% Similarity=-0.057 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccC----CH
Q 041816 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG----FV 269 (396)
Q Consensus 194 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~ 269 (396)
.+|++.|++..+.| +...+..+...|...+++++|+.+|++..+.+ +...+..|...|.. + ++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------~~~a~~~lg~~y~~-~g~~~~~ 69 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------DGDALALLAQLKIR-NPQQADY 69 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHTTS-STTSCCH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHc-CCCCCCH
Confidence 35778888888875 77888999999999999999999999998865 57788888888888 7 99
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHh----cCCHH
Q 041816 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCY----ANDWNEANCLLIEMMDQGVQ-PDVVTFNVIMDELCK----NGKMD 340 (396)
Q Consensus 270 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~ 340 (396)
++|.++|++..+.| +...+..|...|.. .+++++|..+|++..+.|.. .+...+..|...|.. .++.+
T Consensus 70 ~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 70 PQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 99999999998876 67788888888887 88999999999999987521 126788888889988 88999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 041816 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLT-G-----RVNHAKELFVSMESMGC 389 (396)
Q Consensus 341 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g~ 389 (396)
+|...|++..+. ..+...+..|...|... | +.++|..+|++..+.|.
T Consensus 147 ~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 147 KASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999986 23555777788887653 3 89999999999988774
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.16 E-value=1.6e-09 Score=102.28 Aligned_cols=154 Identities=12% Similarity=-0.043 Sum_probs=121.4
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH
Q 041816 84 AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 163 (396)
.|++++|++.|+++.+..+ .+...|..+...+...|++++|++.+++..+.. +.+...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP--QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4678999999999988655 478899999999999999999999999998865 3367889999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc---CChHHHHHHHHHHHh
Q 041816 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT---GHTIVALNLFEEMAN 240 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 240 (396)
.+++.++.... +...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99999987643 68899999999999999999999999998875 34678899999999999 999999999999988
Q ss_pred cC
Q 041816 241 GN 242 (396)
Q Consensus 241 ~~ 242 (396)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 76
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=5e-10 Score=85.84 Aligned_cols=146 Identities=10% Similarity=-0.070 Sum_probs=117.7
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 77 SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
+|..+...|++++|+..+.......+ .+...+..+..+|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p--~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR--QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH--HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 35556677889999999999876543 356677889999999999999999999998865 337888999999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGH 227 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 227 (396)
++++|+..|++.++..+. +..++..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999999999999987644 788999999999999999876655 58887764 4467788887777777764
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.12 E-value=2.9e-08 Score=81.64 Aligned_cols=202 Identities=8% Similarity=-0.062 Sum_probs=112.0
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc--HHHHHHH
Q 041816 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTP--DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN--VITYSTL 218 (396)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~l 218 (396)
..+..+...+.+.|++++|+..|+++++..+.. ....+..+..+|.+.|++++|+..|+++.+...... ..++..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 344445555666666666666666666543221 134555566666666666666666666665431110 0123333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 298 (396)
..++...|.. . ...|..+...+...|++++|...|+++.+..+. +...+......-
T Consensus 85 g~~~~~~~~~-----~------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~ 140 (225)
T 2yhc_A 85 GLTNMALDDS-----A------------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHC-------------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH
T ss_pred HHHHHhhhhh-----h------------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH
Confidence 3333332210 0 011222233344567888899999888876432 222222211100
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCH
Q 041816 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN----TSTFSTLMDGFCLTGRV 374 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~ 374 (396)
.+...+. .....+...|.+.|++++|...|+++++. .|+ ...+..+..+|.+.|+.
T Consensus 141 ----------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 141 ----------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp ----------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCH
T ss_pred ----------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCc
Confidence 0011110 11234567788999999999999999886 332 25688888999999999
Q ss_pred HHHHHHHHHHHhCC
Q 041816 375 NHAKELFVSMESMG 388 (396)
Q Consensus 375 ~~A~~~~~~m~~~g 388 (396)
++|.+.++.+...+
T Consensus 201 ~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 201 AQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999988765
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.11 E-value=3.9e-09 Score=90.35 Aligned_cols=165 Identities=10% Similarity=0.005 Sum_probs=97.7
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHH-HHHH
Q 041816 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY-STLI 219 (396)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~-~~ll 219 (396)
+...+..+...+.+.|++++|...|++.++..+. +...+..+...+.+.|++++|...++++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 3444555666666667777777777766665433 55666666666667777777777776665542 232222 2222
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHH
Q 041816 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP-DVVTYNSLIHGF 298 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~ 298 (396)
..+...++.++|...+++..... +.+...+..+...+...|++++|.+.|+++.+..... +...+..++..+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-------PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC-------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 23455566666666666666654 4556666666666666677777776666666543321 244566666666
Q ss_pred HhcCCHHHHHHHHHHHH
Q 041816 299 CYANDWNEANCLLIEMM 315 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~ 315 (396)
...|+.++|...+++..
T Consensus 266 ~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 266 AALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHH
Confidence 66666666666665543
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.11 E-value=6.1e-10 Score=85.36 Aligned_cols=146 Identities=10% Similarity=-0.050 Sum_probs=117.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (396)
|...+...|++++|+..++...... +-+...+..+...|.+.|++++|++.|++.++..+. +..+|..+..+|.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 3445566789999999999886532 123456678899999999999999999999998644 78999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL-FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
+++|+..|++..+.. +-+..+|..+...|.+.|+.++|.+. +++..+.. |.+..+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-------P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-------PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHhCc
Confidence 999999999999875 44688999999999999999876654 58888764 5567788877777776664
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.10 E-value=1.6e-09 Score=93.82 Aligned_cols=135 Identities=10% Similarity=-0.063 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-----Ch
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP-----DV 288 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~ 288 (396)
+|+.+...|...|++++|+..|++........+. ...-..++..+..+|.. |++++|++.|++..+..... ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 3444444455555555555555444332100000 00012344444445544 55555555555443211000 02
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQ----GVQPD-VVTFNVIMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
.++..+...|...|++++|+..|++..+. +..+. ...+..+..++...|++++|...|++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34445555555555555555555554431 11111 1133344444445555555555555554
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.10 E-value=1.8e-09 Score=85.20 Aligned_cols=63 Identities=13% Similarity=0.035 Sum_probs=28.3
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP-DVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++.
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 34444444444445555555555554444433221 1234444444444444444444444433
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=2.2e-08 Score=82.31 Aligned_cols=203 Identities=11% Similarity=0.049 Sum_probs=129.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCH--HHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-P-DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA--VAFT 181 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 181 (396)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++++..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556777788899999999999999999875321 1 1356788899999999999999999999987543221 2444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHH
Q 041816 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261 (396)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 261 (396)
.+..++...|.- .+ ..|..+...+...|+.++|...|+++.+.. |.+...+.....
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~ 138 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDATKR 138 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHHHH
Confidence 444555443321 11 123334455567789999999999999875 333333332211
Q ss_pred HHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcC
Q 041816 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD----VVTFNVIMDELCKNG 337 (396)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 337 (396)
.. .+...+. .....+...|.+.|++++|...|+++++.. |+ ...+..+..+|.+.|
T Consensus 139 l~----------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g 198 (225)
T 2yhc_A 139 LV----------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQ 198 (225)
T ss_dssp HH----------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT
T ss_pred HH----------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcC
Confidence 10 0111111 112345667788888888888888888652 33 246777888888888
Q ss_pred CHHHHHHHHHHHHhC
Q 041816 338 KMDEASRLLELMILR 352 (396)
Q Consensus 338 ~~~~A~~~~~~m~~~ 352 (396)
+.++|.+.++.+...
T Consensus 199 ~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 199 MNAQAEKVAKIIAAN 213 (225)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHhh
Confidence 888888888888775
No 109
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.09 E-value=2.4e-07 Score=88.11 Aligned_cols=170 Identities=9% Similarity=-0.001 Sum_probs=113.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHH-HHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC-----
Q 041816 211 NVITYSTLINGLCRTGHTIVAL-NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI----- 284 (396)
Q Consensus 211 ~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----- 284 (396)
+...|...+..+...|+.++|. .+|+..... ++.+...|...+....+.|+++.|.++|+.+.....
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-------~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~ 414 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-------IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA 414 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555555556677777786 888888765 356666777788888888889889888888765310
Q ss_pred ----CCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHH
Q 041816 285 ----NPD------------VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN-GKMDEASRLLE 347 (396)
Q Consensus 285 ----~p~------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~ 347 (396)
.|+ ...|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|.++|+
T Consensus 415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife 494 (679)
T 4e6h_A 415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLE 494 (679)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 121 2357777777777888888888888887751111233343333333333 44788888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 348 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
...+. ++-+...|...+......|+.+.|..+|++.....
T Consensus 495 ~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 495 LGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 88776 45566667777777777888888888888877653
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.08 E-value=4.5e-09 Score=99.22 Aligned_cols=156 Identities=13% Similarity=0.030 Sum_probs=121.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199 (396)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 199 (396)
.|++++|++.+++..+.. +-+...+..+...+...|++++|.+.+++.++.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999987754 235788999999999999999999999999987643 788999999999999999999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc---CCHHHHHHHH
Q 041816 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE---GFVDKAKELF 276 (396)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~ 276 (396)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-------PEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 99998875 4468899999999999999999999999999875 55678899999999999 9999999999
Q ss_pred HHHhhCCCC
Q 041816 277 LQMKDKNIN 285 (396)
Q Consensus 277 ~~m~~~~~~ 285 (396)
++..+.+..
T Consensus 152 ~~al~~~p~ 160 (568)
T 2vsy_A 152 RAAVAQGVG 160 (568)
T ss_dssp HHHHHHTCC
T ss_pred HHHHhcCCc
Confidence 999876543
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.08 E-value=1.4e-09 Score=85.84 Aligned_cols=155 Identities=12% Similarity=0.023 Sum_probs=122.9
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHhcCChh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC-FCKMGRVS 159 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~ 159 (396)
+...|++++|+..|+++++..| .+...+..+..++...|++++|+..++++.... |+...+..+... +...+...
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDELQ--SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHHH--TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccc
Confidence 3456889999999999988765 478899999999999999999999999987653 344433332222 22333445
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP-NVITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
.|+..+++.++..+. +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++.
T Consensus 92 ~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 92 PELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 678999999887543 68899999999999999999999999999875322 3568899999999999999999999887
Q ss_pred Hh
Q 041816 239 AN 240 (396)
Q Consensus 239 ~~ 240 (396)
..
T Consensus 171 l~ 172 (176)
T 2r5s_A 171 LY 172 (176)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.08 E-value=1.4e-08 Score=87.76 Aligned_cols=178 Identities=9% Similarity=-0.041 Sum_probs=121.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCCh
Q 041816 84 AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST----GLFP-DLYTYNILINCFCKMGRV 158 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~ 158 (396)
.+++++|...|+.+ ...|...|++++|.+.|.+..+. +-.+ -..+|+.+...|...|++
T Consensus 29 ~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 92 (307)
T 2ifu_A 29 KPDYDSAASEYAKA----------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM 92 (307)
T ss_dssp SCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred CCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCH
Confidence 45666666666654 44677789999999988887542 1111 134677888888889999
Q ss_pred hhHHHHHHHHHhcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCc-cHHHHHHHHHHHHhcCCh
Q 041816 159 SHGFVVLGRILRSCF---TP--DAVAFTSLIKGLCAESRIMEAAALFTKLKAFG----CKP-NVITYSTLINGLCRTGHT 228 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g----~~~-~~~~~~~ll~~~~~~g~~ 228 (396)
++|+..|++.++... .+ -..+++.+...|.. |++++|+..|++..+.. ... ...++..+...|.+.|++
T Consensus 93 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 171 (307)
T 2ifu_A 93 PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF 171 (307)
T ss_dssp GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCH
Confidence 999999888765311 11 24567778888888 99999998888876541 110 145677888888888999
Q ss_pred HHHHHHHHHHHhcCCCCcccccCC-HhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 041816 229 IVALNLFEEMANGNGKFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLQMK 280 (396)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 280 (396)
++|+..|++........+ ..+. ...+..++.++...|++++|...|++..
T Consensus 172 ~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 172 DEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 998888888776421000 0111 2255666677777788888888888877
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.07 E-value=6.8e-09 Score=88.86 Aligned_cols=163 Identities=15% Similarity=0.020 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (396)
+...+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.... |+...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--------p~~~~ 186 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--------QDTRY 186 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--------CSHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--------cchHH
Confidence 34444445555555555555555555555442 2244455555555555555555555555544432 22222
Q ss_pred HHH-HHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHH
Q 041816 256 YTT-IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ-PDVVTFNVIMDEL 333 (396)
Q Consensus 256 ~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~ 333 (396)
... ....+...++.++|.+.+++....... +...+..+...+...|++++|...+.++.+.... .+...+..++..+
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 111 112233444444455555554443322 4444455555555555555555555555443211 0123444444444
Q ss_pred HhcCCHHHHHHHHHH
Q 041816 334 CKNGKMDEASRLLEL 348 (396)
Q Consensus 334 ~~~g~~~~A~~~~~~ 348 (396)
...|+.++|...+++
T Consensus 266 ~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 266 AALGTGDALASXYRR 280 (287)
T ss_dssp HHHCTTCHHHHHHHH
T ss_pred HHcCCCCcHHHHHHH
Confidence 444554444444443
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.05 E-value=1.9e-07 Score=80.77 Aligned_cols=221 Identities=9% Similarity=0.013 Sum_probs=150.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 041816 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG-RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE-S-RIMEAA 197 (396)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~a~ 197 (396)
+..++|+++++++...+. -+..+|+.--..+...| .+++++++++.++...++ +..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 344567777777766542 24455666666666666 477777777777776544 666777666666665 5 677888
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC-
Q 041816 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTI--------VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF- 268 (396)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 268 (396)
.+++++.+.. +.|-.+|+.-...+.+.|..+ ++++.++++.+.. +-|..+|+.....+.+.+.
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-------p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-------GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcccc
Confidence 8888887764 446777776666666655555 8999999999876 6788999999888888876
Q ss_pred ------HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC----
Q 041816 269 ------VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW--------------------NEANCLLIEMMDQG---- 318 (396)
Q Consensus 269 ------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~--------------------~~a~~~~~~~~~~~---- 318 (396)
++++++.++++....+. |...|+.+-..+.+.|.. ........++...+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 68899999988887655 778888777766666653 12222222222211
Q ss_pred -CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 319 -VQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 319 -~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
-.+....+..+++.|...|+.++|.++++.+.+.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1245667777888888888888888888887654
No 115
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.00 E-value=2.5e-07 Score=79.97 Aligned_cols=220 Identities=10% Similarity=0.037 Sum_probs=172.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-C-ChhhHH
Q 041816 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK-HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM-G-RVSHGF 162 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g-~~~~a~ 162 (396)
..++|+++++.++...|. +..+|+.--.++...| .+++++++++.+..... -+..+|+.-...+... + ++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHH
Confidence 357899999999998775 8889999888888888 59999999999998763 3777888887777777 7 899999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC-------
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIM--------EAAALFTKLKAFGCKPNVITYSTLINGLCRTGH------- 227 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~------- 227 (396)
++++.+++.... |..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|..+|+.....+.+.+.
T Consensus 146 ~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 999999987644 7888887666666666555 8999999999876 4588899999888888886
Q ss_pred hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCH--------------------HHHHHHHHHHhhCC----
Q 041816 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV--------------------DKAKELFLQMKDKN---- 283 (396)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~~---- 283 (396)
++++++.++++.... +-|...|+.+-..+.+.|.. ....+...++...+
T Consensus 224 ~~eELe~~~~aI~~~-------P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-------PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp HHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred HHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 688999999988875 67888898877777766653 23333333333322
Q ss_pred -CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 284 -INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 284 -~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
..++...+..++..|...|+.++|.++++.+.+.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1357788899999999999999999999998754
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.98 E-value=4.1e-07 Score=77.96 Aligned_cols=165 Identities=7% Similarity=-0.035 Sum_probs=121.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCH----hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CC----
Q 041816 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT----VTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN-PD---- 287 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~---- 287 (396)
..+..+...|++++|..++++...... ..++. ..+..+...+...+++++|+..|++....... ++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEE-----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 346678888999999999998877531 12221 13345677777888999999999998874322 22
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC
Q 041816 288 VVTYNSLIHGFCYANDWNEANCLLIEMMD----Q-GVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILR----GVNPN 357 (396)
Q Consensus 288 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~ 357 (396)
..+|+.+...|...|++++|...++++.+ . +..+. ..++..+...|.+.|++++|...+++..+. +..+.
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 23688899999999999999999999874 1 11222 237788899999999999999999887753 22222
Q ss_pred -HHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 041816 358 -TSTFSTLMDGFCLTGR-VNHAKELFVSMES 386 (396)
Q Consensus 358 -~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 386 (396)
...|..+..+|.+.|+ +++|.+.|++...
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 6788889999999994 6999998888754
No 117
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.96 E-value=1.3e-07 Score=89.89 Aligned_cols=230 Identities=10% Similarity=-0.001 Sum_probs=136.3
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH-HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHH
Q 041816 89 EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVL-SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167 (396)
Q Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (396)
.+..+|++++..-+ .....|-..+..+...|+.++|. ++|++.... .+.+...|...+....+.|++++|.++|+.
T Consensus 327 Rv~~~Ye~aL~~~p--~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 327 RMTYVYMQAAQHVC--FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34556666666543 36666777777677777777775 777777653 233455556666666677777777777777
Q ss_pred HHhcCC---------CC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHhc
Q 041816 168 ILRSCF---------TP------------DAVAFTSLIKGLCAESRIMEAAALFTKLKAF-GCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 168 ~~~~~~---------~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~ 225 (396)
+++... .| ...+|...++...+.|+.+.|.++|.+..+. + ......|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 765310 12 1235666666666677777777777777654 2 11222333222222333
Q ss_pred -CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcC
Q 041816 226 -GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP--DVVTYNSLIHGFCYAN 302 (396)
Q Consensus 226 -g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~ 302 (396)
++.+.|..+|+...+.. +.+...|...+......|+.+.|..+|+........+ ....|...+..-.+.|
T Consensus 483 ~~d~e~Ar~ife~~Lk~~-------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYF-------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG 555 (679)
T ss_dssp TSCCHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHC-------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence 34677777777776652 4455566666666666777777777777776553311 2345666666666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041816 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMD 331 (396)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 331 (396)
+.+.+..+.+++.+. .|+......+++
T Consensus 556 ~~~~~~~v~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 556 SLNSVRTLEKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp CSHHHHHHHHHHHHH--STTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCcHHHHHHH
Confidence 777777777777664 244333333333
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=2.1e-08 Score=85.48 Aligned_cols=194 Identities=8% Similarity=-0.037 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (396)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~ 74 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVKA 74 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHH
Confidence 34455556666666666666666666666543 2355666666666666666666666666666553 445566
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041816 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335 (396)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 335 (396)
+..+..+|...|++++|...|++..+.+.. +...+...+....+ ..++. -+..........+......+.. + .
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~ 147 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTR-L-I 147 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHH-H-H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHH-H-H
Confidence 666666666666777766666665543211 11111111111111 01111 1111222223333333333322 2 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 041816 336 NGKMDEASRLLELMILRGVNPNT-STFSTLMDGFCLT-GRVNHAKELFVSMES 386 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 386 (396)
.|+.++|.+.+++..+. .|+. .....+...+.+. +.+++|.++|++..+
T Consensus 148 ~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 56777777777766653 4443 3333333334443 567777777777654
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.92 E-value=1.3e-07 Score=76.79 Aligned_cols=135 Identities=11% Similarity=-0.104 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 224 (396)
+..+...+...|++++|...|++.. .++...+..+...|...|++++|+..|++..+.. +.+...|..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555566666666666666553 3456666677777777777777777777766653 3356667777777777
Q ss_pred cCChHHHHHHHHHHHhcCCCCc--------c-cccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 041816 225 TGHTIVALNLFEEMANGNGKFG--------V-VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284 (396)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 284 (396)
.|++++|+..|++..+...... . ..+.....+..+..+|.+.|++++|.+.|+...+...
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 7777777777777766431100 0 0112337788899999999999999999999987653
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.92 E-value=1.3e-07 Score=76.70 Aligned_cols=130 Identities=11% Similarity=-0.020 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHH
Q 041816 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257 (396)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (396)
..+..+...+...|++++|...|++.. .++..+|..+...|...|++++|+..+++..... +.+...+.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~ 75 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KHLAVAYF 75 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------ccchHHHH
Confidence 345567778889999999999998874 5688899999999999999999999999998875 56778899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCC---------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041816 258 TIIDGLCKEGFVDKAKELFLQMKDKNINP---------------DVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318 (396)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p---------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (396)
.+..+|...|++++|.+.|++..+..... ....+..+..++...|++++|...++++.+..
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999999999998754321 12678888899999999999999999998754
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.88 E-value=9e-07 Score=75.83 Aligned_cols=167 Identities=7% Similarity=-0.058 Sum_probs=79.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC---CC--hhhH
Q 041816 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN---PD--VVTY 291 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---p~--~~~~ 291 (396)
..+..+...|++++|.+.+++..+....... .......+..+...+...|++++|...+++..+.... +. ..+|
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3444455555555555555554443210000 0000112223444455555666666666555432111 11 2355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHH
Q 041816 292 NSLIHGFCYANDWNEANCLLIEMMD---Q-GVQP--DVVTFNVIMDELCKNGKMDEASRLLELMILR----GVNP-NTST 360 (396)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~---~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~ 360 (396)
+.+...|...|++++|...++++.+ . +..+ ...++..+...|...|++++|...+++..+. +... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 5566666666666666666665542 1 1011 1135555666666666666666666655432 1111 1445
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHHH
Q 041816 361 FSTLMDGFCLTGRVNHA-KELFVSM 384 (396)
Q Consensus 361 ~~~li~~~~~~g~~~~A-~~~~~~m 384 (396)
|..+...|...|++++| ...+++.
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 55666666666666666 5545543
No 122
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.88 E-value=3.3e-08 Score=77.80 Aligned_cols=126 Identities=11% Similarity=0.124 Sum_probs=104.0
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHhcC
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC-FCKMG 156 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g 156 (396)
+..+...|++++|+..++..+...+ .+...|..+..++...|++++|+..|++..+.. +.+...+..+..+ +...|
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQAS 93 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcC
Confidence 3557788999999999999988765 478899999999999999999999999998754 2367778888888 77899
Q ss_pred Ch--hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041816 157 RV--SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207 (396)
Q Consensus 157 ~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (396)
++ ++|...++..++..+. +...+..+...|...|++++|...|+++.+..
T Consensus 94 ~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CcchHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 98 9999999999987643 67888899999999999999999999998874
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.87 E-value=5.2e-08 Score=83.59 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=122.7
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHhHHHHHHH
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPL----TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PD----LYTYNILINC 151 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~ 151 (396)
+...|++++|..+++...+..+..++. ..+..+...+...+++++|+..+++....... ++ ..+++.+...
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 456789999999999998865543342 23445677777888999999999999874322 23 2368899999
Q ss_pred HHhcCChhhHHHHHHHHHhc-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCc-cHHHHHHHHH
Q 041816 152 FCKMGRVSHGFVVLGRILRS-----CFTP-DAVAFTSLIKGLCAESRIMEAAALFTKLKAF----GCKP-NVITYSTLIN 220 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~ll~ 220 (396)
|...|++++|+..++++++. +..+ ...++..+...|.+.|++++|...+++..+. +..+ -..+|..+..
T Consensus 165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 244 (293)
T 3u3w_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGE 244 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 99999999999999999841 1111 2347888999999999999999999987653 2112 2678899999
Q ss_pred HHHhcCC-hHHHHHHHHHHHh
Q 041816 221 GLCRTGH-TIVALNLFEEMAN 240 (396)
Q Consensus 221 ~~~~~g~-~~~a~~~~~~~~~ 240 (396)
+|.+.|+ .++|.+.+++...
T Consensus 245 ~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 245 CLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHHH
Confidence 9999995 5999999988764
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=1.5e-07 Score=72.84 Aligned_cols=93 Identities=13% Similarity=0.020 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHH
Q 041816 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260 (396)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 260 (396)
..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..... +.+...+..+.
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~a 88 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHHHHHHHH
Confidence 333334444444444444444443332 1233344444444444444444444444444332 22333444444
Q ss_pred HHHhccCCHHHHHHHHHHHhh
Q 041816 261 DGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~m~~ 281 (396)
.++...|++++|.+.|++..+
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444433
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=1.8e-07 Score=72.43 Aligned_cols=126 Identities=10% Similarity=-0.004 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 224 (396)
+..+...+...|++++|...+.+.++... .+..++..+...+...|++++|...+++..+.. +.+...|..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 34444444455555555555555544432 244455555555555555555555555555543 2344555555555666
Q ss_pred cCChHHHHHHHHHHHhcCCCCcccccCCHhhHHH--HHHHHhccCCHHHHHHHHHHH
Q 041816 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT--IIDGLCKEGFVDKAKELFLQM 279 (396)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m 279 (396)
.|++++|...++++.... +.+...+.. ++..+.+.|++++|.+.+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~-------p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666555543 223333322 222244555556655555543
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.85 E-value=1.2e-07 Score=69.96 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 041816 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 225 (396)
......+.+.|++++|++.|++.++..+. +...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|...
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHC
Confidence 33334444444444444444444433211 33344444444444444444444444443332 12333344444444444
Q ss_pred CChHHHHHHHHHHHh
Q 041816 226 GHTIVALNLFEEMAN 240 (396)
Q Consensus 226 g~~~~a~~~~~~~~~ 240 (396)
|++++|++.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444433
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.84 E-value=7.6e-08 Score=80.50 Aligned_cols=188 Identities=7% Similarity=-0.074 Sum_probs=136.2
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCCCH-------------
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLL-------FGCLAKTKHYDTVLSLFKRLNSTGLFPDL------------- 142 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------------- 142 (396)
..+++..|.+.|.++....|. ....|+.+ ...+...++..+++..+..-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 468999999999999998775 77889888 5666666666666666655443 22221
Q ss_pred ---------HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc--
Q 041816 143 ---------YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN-- 211 (396)
Q Consensus 143 ---------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-- 211 (396)
.....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 123346677888899999999998887654 333355666678888999999999998665432 111
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccC--CHhhHHHHHHHHhccCCHHHHHHHHHHHhhCC
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP--NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 283 (396)
...+..+..++...|++++|+..|++..... ..| ..........++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSP------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTST------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3467778888999999999999999887533 213 33466777778888899999999999888764
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.84 E-value=1.8e-07 Score=69.05 Aligned_cols=113 Identities=11% Similarity=0.000 Sum_probs=96.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
.....+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++.++.... +...|..+.
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg 88 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHH
Confidence 356788899999999999999999999998765 347888999999999999999999999999988644 788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
.+|...|++++|++.|++..+.. +-+...+..+..
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 99999999999999999999874 335555555543
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.83 E-value=4.1e-07 Score=77.94 Aligned_cols=173 Identities=9% Similarity=-0.005 Sum_probs=124.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-----HhHHHHHHHHHhcCChhhHHHHHHHHHhcCC---CCC--
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-----YTYNILINCFCKMGRVSHGFVVLGRILRSCF---TPD-- 176 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~-- 176 (396)
...+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|+..+.+.++... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 445566777888999999999999988775322111 2234456667788999999999999886422 112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCccccc
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAF----GCKP--NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (396)
..+++.+...|...|++++|...|++..+. +..+ ...++..+...|...|++++|+..+++........+. ..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~-~~ 233 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-MA 233 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-CS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-HH
Confidence 558899999999999999999999988732 1111 1258889999999999999999999988754210000 01
Q ss_pred CCHhhHHHHHHHHhccCCHHHH-HHHHHHHh
Q 041816 251 PNTVTYTTIIDGLCKEGFVDKA-KELFLQMK 280 (396)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 280 (396)
.-..+|..+..+|.+.|++++| ...+++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1256778888888999999988 67677654
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.82 E-value=1e-08 Score=89.82 Aligned_cols=152 Identities=15% Similarity=0.045 Sum_probs=124.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------HHhHHHHHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD--------------LYTYNILIN 150 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--------------~~~~~~li~ 150 (396)
+++++|+..|+......+ .+...|..+...+.+.|++++|+..|++..+...... ...|..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~p--~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKL--EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 445667666666554332 3667889999999999999999999999987542211 478999999
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHH
Q 041816 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230 (396)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 230 (396)
++.+.|++++|+..+++.++..+. +...+..+..+|...|++++|+..|++..+.. +.+..++..+..++.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998643 78899999999999999999999999999875 4467889999999999999998
Q ss_pred H-HHHHHHHHh
Q 041816 231 A-LNLFEEMAN 240 (396)
Q Consensus 231 a-~~~~~~~~~ 240 (396)
| ..+++.|..
T Consensus 283 a~~~~~~~~~~ 293 (336)
T 1p5q_A 283 REKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 8 446666543
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.82 E-value=3.5e-08 Score=84.12 Aligned_cols=195 Identities=10% Similarity=-0.003 Sum_probs=126.2
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++.++... .+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 456778888888899999999999999988754 23677888888899999999999999999888753 3678888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHH
Q 041816 185 KGLCAESRIMEAAALFTKLKAFGCKPNV-ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (396)
.+|...|++++|...|++..+.. |+. ..+...+....+ ...+... ....... .+.+......+...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~------~~~~~~i~~~l~~l- 146 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRW-NSIEERR------IHQESELHSYLTRL- 146 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHH-HHHHHTC------CCCCCHHHHHHHHH-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHH-HHHHHHH------HhhhHHHHHHHHHH-
Confidence 99999999999999998877652 211 011111111111 1111222 2222222 24444444444332
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 041816 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA-NDWNEANCLLIEMMD 316 (396)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~ 316 (396)
..|++++|.+.++...+.... +......+...+.+. +.+++|..+|.++.+
T Consensus 147 -~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 -IAAERERELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -HHHHHHHHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -HHHHHHHHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 268888888888877765321 333334443344444 567888888887764
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.81 E-value=8.9e-08 Score=76.95 Aligned_cols=158 Identities=9% Similarity=-0.061 Sum_probs=117.9
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCC-CCHHhHHHHHHHHHhcC
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS----TGLF-PDLYTYNILINCFCKMG 156 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-p~~~~~~~li~~~~~~g 156 (396)
+..|++++|.++++.+.. .+. ....++..+...+...|++++|+..+++..+ .+.. ....++..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPA-TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC-ChH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 567899999996666644 222 4677899999999999999999999998865 2211 23456788888999999
Q ss_pred ChhhHHHHHHHHHhc----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCc-cHHHHHHHHHHHHhc
Q 041816 157 RVSHGFVVLGRILRS----CFT--PDAVAFTSLIKGLCAESRIMEAAALFTKLKAF----GCKP-NVITYSTLINGLCRT 225 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~ 225 (396)
++++|...+.+..+. +.. .....+..+...+...|++++|...+++..+. +... -..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999988764 212 12456788889999999999999999987643 2111 134467888899999
Q ss_pred CChHHHHHHHHHHHhc
Q 041816 226 GHTIVALNLFEEMANG 241 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~ 241 (396)
|++++|...+++....
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999887654
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.81 E-value=2.4e-07 Score=67.68 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 224 (396)
+..+...+...|++++|.+.++++.+... .+..++..+...+.+.|++++|..+++++.+.. +.+..++..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 33333344444444444444444433321 123333333444444444444444444433322 1223333333333444
Q ss_pred cCChHHHHHHHHHHH
Q 041816 225 TGHTIVALNLFEEMA 239 (396)
Q Consensus 225 ~g~~~~a~~~~~~~~ 239 (396)
.|++++|...++++.
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 90 QGDYDEAIEYYQKAL 104 (125)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444333
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.79 E-value=8.7e-08 Score=77.02 Aligned_cols=161 Identities=12% Similarity=-0.069 Sum_probs=89.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
..|++++|.++++.+... ......++..+...+...|++++|...+++........+. .+....++..+...|...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-HTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcCC
Confidence 346666666644333321 1124555666666666666666666666665542110000 12234456666667777777
Q ss_pred HHHHHHHHHHHhhC----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC--HhhHHHHHHHHHhcC
Q 041816 269 VDKAKELFLQMKDK----NINP--DVVTYNSLIHGFCYANDWNEANCLLIEMMDQ---GVQPD--VVTFNVIMDELCKNG 337 (396)
Q Consensus 269 ~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g 337 (396)
+++|.+.+++.... +..+ ....+..+...+...|++++|...+++..+. .-.+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777665432 1111 2334666677777777777777777776532 00111 234567777788888
Q ss_pred CHHHHHHHHHHHHh
Q 041816 338 KMDEASRLLELMIL 351 (396)
Q Consensus 338 ~~~~A~~~~~~m~~ 351 (396)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888777654
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.79 E-value=2.5e-07 Score=68.57 Aligned_cols=120 Identities=9% Similarity=-0.008 Sum_probs=98.6
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHH
Q 041816 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183 (396)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (396)
+.+...|..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 3567788889999999999999999999998764 33678888899999999999999999999988753 378888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 041816 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226 (396)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 226 (396)
..++.+.|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 999999999999999999988764 234566666766666554
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.79 E-value=4e-07 Score=66.41 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=97.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
....|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|..+++++.+... .+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 85 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHH
Confidence 36788899999999999999999999998754 34677888999999999999999999999998753 47888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 225 (396)
.+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 9999999999999999998874 34566666666555443
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.78 E-value=2.9e-07 Score=68.20 Aligned_cols=120 Identities=7% Similarity=-0.064 Sum_probs=101.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH
Q 041816 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218 (396)
Q Consensus 139 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 218 (396)
+.+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 34566788899999999999999999999998753 378889999999999999999999999998875 4468889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccC
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 267 (396)
..++...|++++|...+++..... +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-------SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-------GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHhc
Confidence 999999999999999999998864 445566777776666554
No 138
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.77 E-value=8.3e-06 Score=75.08 Aligned_cols=285 Identities=11% Similarity=-0.011 Sum_probs=161.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHhC-CCC-CCHHhHHHHHHHHH----hcCC
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH-YDTVLSLFKRLNST-GLF-PDLYTYNILINCFC----KMGR 157 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~~-p~~~~~~~li~~~~----~~g~ 157 (396)
++++.+..+|++.+..- |++..|...+....+.+. .+....+|+..... |.. .+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 67999999999998843 589999999888877763 45677888887653 432 35667777776543 3467
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 041816 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA-------------ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 224 (396)
.+.+..+|++.+......-...|......-.. .+.+..|..+++.+...-...+...|...+..-..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 88899999999874322112233322221111 12233344444444321000133456555554332
Q ss_pred cC--C-----hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhH------
Q 041816 225 TG--H-----TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY------ 291 (396)
Q Consensus 225 ~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~------ 291 (396)
.+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+|+..... + .+...|
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~y~~~ 255 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLYYGLV 255 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHH
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHHHHhh
Confidence 21 1 234677888888764 566788888888888999999999999988766 2 222222
Q ss_pred ----------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-
Q 041816 292 ----------------------------------NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN- 336 (396)
Q Consensus 292 ----------------------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~- 336 (396)
...+....+.++.+.|..+|..+ +.. ..+...|...+..-...
T Consensus 256 ~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 256 MDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp TTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHC
Confidence 11122222345566677777766 211 12233333222221222
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 337 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
++.+.|..+|+...+. .+-+...+...++...+.|+.+.|..+|+++
T Consensus 334 ~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp CCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2577777777776664 2223444444555555556666666555553
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.77 E-value=2.9e-07 Score=67.78 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=8.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHH
Q 041816 148 LINCFCKMGRVSHGFVVLGRIL 169 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~ 169 (396)
+...+...|++++|...+++..
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~ 39 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAI 39 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 3333333334444443333333
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.77 E-value=1.8e-07 Score=71.28 Aligned_cols=98 Identities=18% Similarity=0.003 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhH
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..... |.+...|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-------P~~~~~~ 107 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-------KNDYTPV 107 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------SSCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------CCCcHHH
Confidence 3344455555555555555555555555543 2345555555555555555555555555555543 3344555
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
..+..+|.+.|++++|.+.|+...+.
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555555555543
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.76 E-value=1.9e-07 Score=73.43 Aligned_cols=119 Identities=8% Similarity=0.051 Sum_probs=60.2
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH-HHhcCCh--HHH
Q 041816 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING-LCRTGHT--IVA 231 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-~~~~g~~--~~a 231 (396)
.|++++|...++..++... .+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3455555555555554432 244555555555555555555555555555442 2244445555555 4455555 555
Q ss_pred HHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
...++++.... +.+...+..+..+|...|++++|...|++..+.
T Consensus 101 ~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-------SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 55555555543 334455555555555555555555555555544
No 142
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.76 E-value=7.7e-06 Score=70.38 Aligned_cols=220 Identities=11% Similarity=-0.016 Sum_probs=142.2
Q ss_pred HhcCChh-HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041816 118 AKTKHYD-TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR----------VSHGFVVLGRILRSCFTPDAVAFTSLIKG 186 (396)
Q Consensus 118 ~~~~~~~-~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (396)
.+.|.+. +|+++++.+...+. -+..+|+.--..+...+. +++++.+++.++...++ +..+|+.-.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3455554 78999999987652 244556655444444333 57788888888877644 77888877777
Q ss_pred HHhcC--CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHH
Q 041816 187 LCAES--RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH-TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263 (396)
Q Consensus 187 ~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (396)
+.+.| .+++++.+++++.+.. +.|-.+|+.-...+...|. .+++++.++.+.+.. +-|..+|+.....+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-------p~N~SAW~~R~~ll 189 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHH
Confidence 77777 4888888888888875 4578888888878888887 488888888888875 56777887776665
Q ss_pred hcc--------------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCC
Q 041816 264 CKE--------------GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA-----------NDWNEANCLLIEMMDQG 318 (396)
Q Consensus 264 ~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~~ 318 (396)
.+. +.++++++.+++.....+. |...|+.+-..+.+. +.++++++.++++.+.
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~- 267 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL- 267 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-
Confidence 554 3466777777777765544 666666554444444 2355666666666653
Q ss_pred CCCCHhhHHHHHH-----HHHhcCCHHHHHHHHHHHHh
Q 041816 319 VQPDVVTFNVIMD-----ELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 319 ~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~ 351 (396)
.||. .|+.+.. .....|..+++...+.++.+
T Consensus 268 -~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 268 -EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp -CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred -Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3443 2322111 11134455555556665555
No 143
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.76 E-value=1e-05 Score=69.61 Aligned_cols=216 Identities=10% Similarity=-0.018 Sum_probs=166.6
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH----------YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
.++|+++++.++...|. +..+|+.--.++...+. +++++.+++.+.... +-+..+|+.-...+...|
T Consensus 46 s~eaL~~t~~~L~~nP~--~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 46 DESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp SHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 45899999999998765 77888887666655444 688999999998765 347788988888888888
Q ss_pred C--hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc--------
Q 041816 157 R--VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR-IMEAAALFTKLKAFGCKPNVITYSTLINGLCRT-------- 225 (396)
Q Consensus 157 ~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-------- 225 (396)
+ +++++.+++.+.+..+. |..+|+.-.-.+...|. ++++++.++++.+.. +.|..+|+.....+.+.
T Consensus 123 ~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 123 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC----
T ss_pred cccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccccc
Confidence 4 89999999999998754 88899888888888888 699999999999876 45888888877776665
Q ss_pred ------CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc-----------CCHHHHHHHHHHHhhCCCCCCh
Q 041816 226 ------GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE-----------GFVDKAKELFLQMKDKNINPDV 288 (396)
Q Consensus 226 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~ 288 (396)
+.++++++.++...... |-|..+|+.+-..+.+. +.++++++.++++.+.. ||.
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~-------P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd~ 271 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTD-------PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PEN 271 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred ccccchHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--ccc
Confidence 45788999999998875 67888888776666665 45789999999998764 333
Q ss_pred hhHHHHHH-----HHHhcCCHHHHHHHHHHHHHC
Q 041816 289 VTYNSLIH-----GFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 289 ~~~~~li~-----~~~~~~~~~~a~~~~~~~~~~ 317 (396)
.|..+.. +....+..+++...+.++++.
T Consensus 272 -~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 272 -KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp -HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3432222 222456777888888888874
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.76 E-value=3.9e-07 Score=76.24 Aligned_cols=126 Identities=10% Similarity=-0.088 Sum_probs=61.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC--hhhHHHHH
Q 041816 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD--VVTYNSLI 295 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li 295 (396)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+.
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--------p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG 178 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--------SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHG 178 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--------CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHH
Confidence 4444555555555555555544432 222244444445555555555555555333221 110 12445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 296 HGFCYANDWNEANCLLIEMMDQGVQPD--VVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 179 ~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 179 VAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555566666666666665553222132 223444455555666666666666666553
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.75 E-value=3.7e-07 Score=67.22 Aligned_cols=121 Identities=11% Similarity=0.061 Sum_probs=100.0
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
.+...+..+...+...|++++|+..+++..... +.+...+..+...+...|++++|...+....+... .+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHH
Confidence 466788889999999999999999999998754 34677888899999999999999999999988753 3677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCh
Q 041816 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 228 (396)
..+...|++++|...|++..+.. +.+...+..+..++...|+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 89999999999999999888764 34667777777777777664
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.73 E-value=3.3e-07 Score=80.20 Aligned_cols=151 Identities=11% Similarity=-0.014 Sum_probs=114.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--------------HHHHHHHHHH
Q 041816 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD--------------AVAFTSLIKG 186 (396)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 186 (396)
+++++|++.++...+.. +-+...+..+...+.+.|++++|+..|++.++...... ..+|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44556665554433221 11456778888889999999999999999988754322 5788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
|.+.|++++|+..+++..+.. +.+..+|..+..+|...|++++|+..|+++.+.. +.+...+..+..++.+.
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------PNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHH
Confidence 999999999999999888875 4467888888889999999999999999888865 55677888888888888
Q ss_pred CCHHHH-HHHHHHHh
Q 041816 267 GFVDKA-KELFLQMK 280 (396)
Q Consensus 267 g~~~~a-~~~~~~m~ 280 (396)
|+.++| ..+|+.|.
T Consensus 278 ~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 278 RRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877 44565554
No 147
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.72 E-value=3.2e-07 Score=69.93 Aligned_cols=98 Identities=9% Similarity=-0.096 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhH
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 291 (396)
...+..+...+.+.|++++|+..|+++.... |.+...|..+..+|...|++++|+..|++.....+. +...|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~ 107 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPV 107 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHH
Confidence 4455556666666666666666666666654 445566666666666666666666666666655433 45556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 292 NSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
..+..+|...|++++|...|++..+.
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666666666653
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.69 E-value=1.2e-07 Score=72.11 Aligned_cols=93 Identities=12% Similarity=-0.030 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 041816 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294 (396)
Q Consensus 215 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 294 (396)
+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|+..|++....... +...+..+
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~l 95 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-------HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHH
Confidence 3333444444444444444444444332 223334444444444444444444444444333221 33333444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 041816 295 IHGFCYANDWNEANCLLIEMM 315 (396)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~ 315 (396)
..+|...|++++|...|+...
T Consensus 96 g~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444433
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.68 E-value=1.3e-07 Score=72.10 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhH
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..... +.+...+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~ 92 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-------IXEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCchHH
Confidence 4444555555566666666666666655543 2345555556666666666666666666665543 3345555
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
..+..+|...|++++|.+.|+...+
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666666666666666666554
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.67 E-value=3.8e-08 Score=79.10 Aligned_cols=88 Identities=16% Similarity=-0.072 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHH
Q 041816 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257 (396)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (396)
.++..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..... +.+...+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~ 160 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-------PNNLDIRN 160 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHH
Confidence 445555555555566666666555555542 2344555555555555666666666665555543 23444444
Q ss_pred HHHHHHhccCCHHHHH
Q 041816 258 TIIDGLCKEGFVDKAK 273 (396)
Q Consensus 258 ~li~~~~~~g~~~~a~ 273 (396)
.+..++...++.+++.
T Consensus 161 ~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 161 SYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5544444444444333
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.65 E-value=6.5e-08 Score=77.73 Aligned_cols=130 Identities=15% Similarity=0.057 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-c--------------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK-P--------------NVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~--------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
...+..+...+...|++++|+..|++..+.... + ...+|..+..+|...|++++|+..+++....
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344555666666667777777777666654211 0 1256777777888888888888888887776
Q ss_pred CCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHH
Q 041816 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN-CLLIEM 314 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~-~~~~~~ 314 (396)
. +.+...+..+..+|...|++++|.+.|++..+.... +...+..+...+...++.+++. ..+..+
T Consensus 118 ~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 118 D-------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp S-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC---------
T ss_pred C-------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 456677777777788888888888888777665432 4556666666666555555554 333333
No 152
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.64 E-value=3.9e-05 Score=70.59 Aligned_cols=208 Identities=9% Similarity=0.023 Sum_probs=131.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
+..+|++++... +.+...|...+..+.+.|+++.|..+|++.... +.+...|.. |....+.++. ++.+.+
T Consensus 198 v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 198 MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHH
Confidence 455677666643 335667777777777788888888888887776 333333322 2222222222 222222
Q ss_pred cCCCCc------ccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHH
Q 041816 241 GNGKFG------VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY-ANDWNEANCLLIE 313 (396)
Q Consensus 241 ~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~ 313 (396)
...... .........|...+....+.++.+.|..+|+.. .. ...+...|......-.. .++.+.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 110000 000112355677777777788899999999999 32 12233444332222222 3369999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 314 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
..+.. +-+...+...++...+.|+.+.|..+|+.+. .....|...+..-...|+.+.+.++++++..
T Consensus 346 al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 98753 2234556667888888999999999999973 2578888888877888999999999988874
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.62 E-value=1.1e-06 Score=64.55 Aligned_cols=93 Identities=12% Similarity=-0.031 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHH
Q 041816 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259 (396)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (396)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l 78 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-------PNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHH
Confidence 3334444444444444444444444432 2234444444444444444444444444444432 2334444444
Q ss_pred HHHHhccCCHHHHHHHHHHHh
Q 041816 260 IDGLCKEGFVDKAKELFLQMK 280 (396)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~ 280 (396)
..++...|++++|.+.|++..
T Consensus 79 g~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHH
Confidence 444444444444444444443
No 154
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.62 E-value=8.9e-07 Score=80.29 Aligned_cols=198 Identities=10% Similarity=-0.046 Sum_probs=141.5
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCH---------------hhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHH--
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPL---------------TSFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLY-- 143 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~-- 143 (396)
...|++++|++.|..+++..+...+. .++..+...|.+.|++++|.+.+..+... +..++..
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH
Confidence 45678999999999998876553332 23778899999999999999999887542 1112222
Q ss_pred --hHHHHHHHHHhcCChhhHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCcc
Q 041816 144 --TYNILINCFCKMGRVSHGFVVLGRILRS----CFTP-DAVAFTSLIKGLCAESRIMEAAALFTKLKAF----G-CKPN 211 (396)
Q Consensus 144 --~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g-~~~~ 211 (396)
+.+.+-..+...|+.+.|..++...... +..+ -..++..+...|...|++++|..+++++... + -+..
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 174 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL 174 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence 2233333444568899999998887642 2222 3567888999999999999999999987653 1 1123
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCC--HhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN--TVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
..++..++..|...|++++|..++++......... .++. ...+..+...+...|++++|...|.+..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY--CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC--CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 56788999999999999999999998765321100 1111 34567777888899999999988887653
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.61 E-value=3.1e-06 Score=60.87 Aligned_cols=96 Identities=9% Similarity=-0.014 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (396)
..+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.... +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 344444555555555555555555554432 123444444444444555555555555544443221 344444444444
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 041816 188 CAESRIMEAAALFTKLKA 205 (396)
Q Consensus 188 ~~~g~~~~a~~~~~~~~~ 205 (396)
...|++++|...+++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 444444444444444444
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.61 E-value=2.5e-06 Score=61.33 Aligned_cols=91 Identities=12% Similarity=-0.036 Sum_probs=33.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 041816 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226 (396)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 226 (396)
.+...+...|++++|...++...+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHh
Confidence 333333344444444444444333321 123333333333333344444444433333322 112333333333333333
Q ss_pred ChHHHHHHHHHHH
Q 041816 227 HTIVALNLFEEMA 239 (396)
Q Consensus 227 ~~~~a~~~~~~~~ 239 (396)
++++|...+++..
T Consensus 87 ~~~~A~~~~~~~~ 99 (118)
T 1elw_A 87 RFEEAKRTYEEGL 99 (118)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.61 E-value=1.5e-06 Score=63.82 Aligned_cols=99 Identities=7% Similarity=-0.017 Sum_probs=79.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++.++..+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 34567777788888889999999888887754 336778888888888889999999888888887533 6778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~ 206 (396)
++...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888889999998888888765
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=1.2e-06 Score=66.12 Aligned_cols=91 Identities=14% Similarity=-0.004 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHH
Q 041816 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261 (396)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 261 (396)
.+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|++..... +.+...+..+..
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~ 94 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-------INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCcHHHHHHHH
Confidence 33344444444444444444444432 2234444444444444444444444444444432 233334444444
Q ss_pred HHhccCCHHHHHHHHHHHh
Q 041816 262 GLCKEGFVDKAKELFLQMK 280 (396)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~ 280 (396)
+|...|++++|.+.|+...
T Consensus 95 ~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 4444444444444444443
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.55 E-value=1.4e-06 Score=65.65 Aligned_cols=98 Identities=12% Similarity=-0.011 Sum_probs=51.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
+...+..+...+.+.|++++|+..|++....+ +.+...|..+..++...|++++|+..|+..++..+. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34444445555555555555555555555433 124444555555555555555555555555554322 3444455555
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 041816 186 GLCAESRIMEAAALFTKLKA 205 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~ 205 (396)
+|...|++++|...|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555544
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=4.5e-06 Score=62.91 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=92.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD----LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 180 (396)
.+...+..+...+...|++++|++.|++..+.. |+ ...+..+..++...|++++|+..+++..+.... +...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 577788889999999999999999999998754 55 677888888999999999999999999887533 67888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 889999999999999999999988764 234555544443
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.55 E-value=1.3e-06 Score=62.20 Aligned_cols=93 Identities=14% Similarity=-0.034 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccC--CHhhHHH
Q 041816 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP--NTVTYTT 258 (396)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 258 (396)
..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~~ 81 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-------EDEYNKDVWAA 81 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------CCTTCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------cccchHHHHHH
Confidence 333444444444444444444444332 1233344444444444444444444444444432 22 3344444
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHhh
Q 041816 259 IIDGLCKE-GFVDKAKELFLQMKD 281 (396)
Q Consensus 259 li~~~~~~-g~~~~a~~~~~~m~~ 281 (396)
+..++... |++++|.+.++....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Confidence 44444444 444444444444443
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=5.7e-06 Score=74.95 Aligned_cols=166 Identities=5% Similarity=-0.112 Sum_probs=71.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcc
Q 041816 149 INCFCKMGRVSHGFVVLGRILRSCFTPD----------------AVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPN 211 (396)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~ 211 (396)
.+.+.+.|++++|++.|..+++...... ...+..+...|...|++++|.+++..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445566777777777777666432211 1124445555555555555555555543320 0111
Q ss_pred HHH----HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC--CCC
Q 041816 212 VIT----YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK--NIN 285 (396)
Q Consensus 212 ~~~----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~ 285 (396)
..+ .+.+...+...|+.+.|..+++.........+. ...-..++..+...|...|++++|..+++++... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR-VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC-CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 111 111222222344555555555555444211100 0001223444444555555555555555444321 100
Q ss_pred --C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 286 --P-DVVTYNSLIHGFCYANDWNEANCLLIEMM 315 (396)
Q Consensus 286 --p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (396)
+ ...+|..++..|...|++++|..++++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 0 12234444444555555555555544443
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=2.3e-06 Score=63.03 Aligned_cols=105 Identities=10% Similarity=0.024 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CC----HHHHH
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT--PD----AVAFT 181 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 181 (396)
..+..+...+.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.+++.++.... .+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345666777777777777777777776643 234566677777777777777777777776653211 11 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHH
Q 041816 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215 (396)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 215 (396)
.+..++...|++++|++.|++..+. .|+..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 6667777777777777777776654 3444433
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=2.6e-06 Score=65.87 Aligned_cols=95 Identities=15% Similarity=0.036 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHH
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (396)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++..... +.+...|..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~ 84 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-------PKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHH
Confidence 33344444444444444444444444332 1233444444444444444444444444444432 223444444
Q ss_pred HHHHHhccCCHHHHHHHHHHHhh
Q 041816 259 IIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 259 li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
+..+|...|++++|.+.|++..+
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=1.9e-06 Score=63.48 Aligned_cols=97 Identities=12% Similarity=0.042 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC--CC---
Q 041816 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN--PD--- 287 (396)
Q Consensus 213 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~--- 287 (396)
.++..+...+.+.|++++|+..|++..+.. |.+...|..+..+|.+.|++++|++.+++..+.... ++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 345555566666666666666666665543 344555666666666666666666666655432111 00
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 288 -VVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 288 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
..+|..+..++...|++++|+..|++.++
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12334444444445555555555544443
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.50 E-value=1.2e-06 Score=64.47 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=85.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CC----HHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT--PD----AVA 179 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~ 179 (396)
....|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++...+.... ++ ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 34567778888888899999999999887754 346777888888888899999999998888775321 12 667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 041816 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221 (396)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 221 (396)
+..+..++...|++++|...|++..+.. |+...+..+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 8888888889999999999998888764 455555554443
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.50 E-value=3.2e-06 Score=65.34 Aligned_cols=98 Identities=9% Similarity=-0.045 Sum_probs=47.5
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
+...|..+...+.+.|++++|++.|++..+.. +-+...|..+..++.+.|++++|+..+++.++.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34445555555555555555555555554432 123444444555555555555555555555444322 3444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 041816 186 GLCAESRIMEAAALFTKLKA 205 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~ 205 (396)
+|...|++++|...|++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 45555555555555544443
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.50 E-value=3.3e-06 Score=60.12 Aligned_cols=98 Identities=12% Similarity=0.044 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 041816 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP--NTSTFSTLM 365 (396)
Q Consensus 288 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li 365 (396)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+. .+. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV-IEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccchHHHHHHHH
Confidence 3344555555555555666665555555432 223445555566666666666666666666554 122 355566666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhC
Q 041816 366 DGFCLT-GRVNHAKELFVSMESM 387 (396)
Q Consensus 366 ~~~~~~-g~~~~A~~~~~~m~~~ 387 (396)
..+... |++++|.+.+++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666554
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.49 E-value=3.1e-06 Score=63.03 Aligned_cols=99 Identities=15% Similarity=0.036 Sum_probs=51.2
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
.+...|..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...++..++.... +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 344555555555555555555555555554432 123444555555555555555555555555554322 444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 041816 185 KGLCAESRIMEAAALFTKLKA 205 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~ 205 (396)
.+|...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555555443
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=6.7e-06 Score=61.93 Aligned_cols=96 Identities=13% Similarity=-0.045 Sum_probs=41.8
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHH
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD----AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 217 (396)
...+..+...+...|++++|...|++..+.. |+ ...+..+...|...|++++|+..+++..+.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 3344444444444445555554444444432 22 3334444444444444444444444444332 123334444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 041816 218 LINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
+..++...|++++|...|++...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.47 E-value=5e-06 Score=61.87 Aligned_cols=96 Identities=11% Similarity=-0.047 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhH
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...+++..... +.+...+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~ 80 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVKAH 80 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------chhHHHH
Confidence 4444444444455555555555555444432 2234444445555555555555555555544432 2334444
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHh
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMK 280 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~ 280 (396)
..+..+|...|++++|...|+...
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445555555555555555554443
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.44 E-value=8.9e-07 Score=81.33 Aligned_cols=124 Identities=12% Similarity=0.036 Sum_probs=100.8
Q ss_pred hccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041816 74 CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (396)
Q Consensus 74 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 153 (396)
....+..+...|++++|++.|+++++..+. +...|..+..++.+.|++++|++.+++..+.. +.+...|..+..+|.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 445677888999999999999999997654 78899999999999999999999999999875 346788999999999
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 041816 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG--LCAESRIMEAAALFT 201 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 201 (396)
..|++++|++.+++.++.... +...+..+..+ +.+.|++++|++.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999987533 34455555555 888899999999988
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.44 E-value=1.7e-06 Score=63.58 Aligned_cols=58 Identities=17% Similarity=0.116 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041816 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279 (396)
Q Consensus 215 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 279 (396)
+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3334444444444444444444444332 223334444444444444444444444443
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.40 E-value=3.5e-06 Score=61.50 Aligned_cols=91 Identities=9% Similarity=-0.004 Sum_probs=42.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 041816 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 227 (396)
+...+.+.|++++|+..+++.++..+. +...|..+..++...|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 334444445555555555554444322 44444444444555555555555555444432 1234444444444445555
Q ss_pred hHHHHHHHHHHHh
Q 041816 228 TIVALNLFEEMAN 240 (396)
Q Consensus 228 ~~~a~~~~~~~~~ 240 (396)
+++|+..+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
No 175
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.37 E-value=1.3e-05 Score=75.02 Aligned_cols=173 Identities=10% Similarity=-0.017 Sum_probs=145.9
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH----------YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
.++|++.++.++...|. +..+|+.--.++...|+ ++++++.++.+.+... -+..+|+.-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~--~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCch--hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc
Confidence 57899999999998775 88889988888888777 9999999999988763 47788998888889999
Q ss_pred --ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc--------
Q 041816 157 --RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES-RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT-------- 225 (396)
Q Consensus 157 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-------- 225 (396)
+++++++.++++.+.... +..+|+...-.+.+.| .++++++.++++.+.. +.|..+|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 669999999999998754 8899998888888888 8999999999999876 45888898888777763
Q ss_pred ------CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHH
Q 041816 226 ------GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271 (396)
Q Consensus 226 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 271 (396)
+.++++++.++++.... +.+...|+.+-..+.+.+..++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-------P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-------PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-------SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-------CCCccHHHHHHHHHhcCCCccc
Confidence 45689999999998875 6678899998888888777444
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.36 E-value=2.7e-06 Score=65.11 Aligned_cols=134 Identities=8% Similarity=-0.002 Sum_probs=103.7
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN-PD----VVTYNSLIHGFCYANDWNEANCLLIEMMDQ----GVQP-D 322 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~ 322 (396)
..++..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|++++|...+++..+. +..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 457788888999999999999999987653111 11 247888899999999999999999997753 1111 1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 323 VVTFNVIMDELCKNGKMDEASRLLELMILR----GVNP-NTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
...+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456788888999999999999999988753 2111 245677888899999999999999998775
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.36 E-value=3.3e-06 Score=64.58 Aligned_cols=135 Identities=14% Similarity=-0.009 Sum_probs=101.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC---C--CC
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PD----LYTYNILINCFCKMGRVSHGFVVLGRILRSCF---T--PD 176 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~--~~ 176 (396)
..++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+... . ..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346777888888999999999999887653111 11 13677788889999999999999998775311 1 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAF----GCK-PNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
...+..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|.+.+++..+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456778888899999999999999887653 211 12456778888999999999999999987654
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.34 E-value=4.4e-06 Score=60.91 Aligned_cols=93 Identities=13% Similarity=-0.041 Sum_probs=43.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 336 (396)
..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|+..+++..+.. +-+...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33444444445555555555554443322 34444444444555555555555555544432 11233444444555555
Q ss_pred CCHHHHHHHHHHHHh
Q 041816 337 GKMDEASRLLELMIL 351 (396)
Q Consensus 337 g~~~~A~~~~~~m~~ 351 (396)
|++++|...+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555554443
No 179
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.33 E-value=3.7e-05 Score=71.94 Aligned_cols=176 Identities=12% Similarity=-0.024 Sum_probs=143.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041816 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR----------VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189 (396)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (396)
....++|++.++++...+. -+..+|+.--.++...|+ ++++++.++.+++..++ +..+|+.-.-.+.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3445688999999988652 256678777777777777 89999999999998755 88899988888889
Q ss_pred cC--CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 190 ES--RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG-HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 190 ~g--~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
.| ++++++..++++.+.. +.+..+|+.....+.+.| ..+++++.++++.+.. +-|..+|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-------p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-------CCCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-------CCCccHHHHHHHHHHhh
Confidence 99 7899999999999986 458899999988899999 8999999999998876 67888898887776653
Q ss_pred --------------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 041816 267 --------------GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306 (396)
Q Consensus 267 --------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 306 (396)
+.++++++.+++.....+. |...|+.+-..+.+.+..++
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578999999998877655 77888888888877776444
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.33 E-value=1e-05 Score=73.98 Aligned_cols=131 Identities=14% Similarity=0.008 Sum_probs=96.2
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD--------------AVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (396)
...|..+...+.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34556666667777777777777777766432211 5788888889999999999999999988875
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHH-HHHHHh
Q 041816 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE-LFLQMK 280 (396)
Q Consensus 208 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m~ 280 (396)
+.+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..++.+.++.+++.+ ++..|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468888889999999999999999999998865 4566788888888888888877663 444443
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.32 E-value=1.1e-05 Score=73.59 Aligned_cols=145 Identities=10% Similarity=-0.028 Sum_probs=97.8
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc--------------HHHHHHHHHH
Q 041816 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN--------------VITYSTLING 221 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~--------------~~~~~~ll~~ 221 (396)
+++++|.+.++...+..+ -....+..+...|.+.|++++|+..|++..+...... ..+|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~~-~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKL-EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 345556555544333211 1456788889999999999999999999887532211 4667777777
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 041816 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301 (396)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 301 (396)
|.+.|++++|+..++++.... +.+...|..+..+|...|++++|...|++..+.... +...+..+..++...
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKA 398 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 777888888888777777764 456677777777777777777777777777765433 455666666666666
Q ss_pred CCHHHHHH
Q 041816 302 NDWNEANC 309 (396)
Q Consensus 302 ~~~~~a~~ 309 (396)
++++++.+
T Consensus 399 ~~~~~a~~ 406 (457)
T 1kt0_A 399 KEHNERDR 406 (457)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665553
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.32 E-value=2.7e-05 Score=57.05 Aligned_cols=96 Identities=13% Similarity=-0.009 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---HHHHHHH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL---YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD---AVAFTSL 183 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 183 (396)
+..+...+...|++++|++.|+++.+... .+. ..+..+..++...|++++|...++.+.+..+. + ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 34456667777888888888888776431 122 36667777788888888888888888776433 3 5667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC
Q 041816 184 IKGLCAESRIMEAAALFTKLKAFG 207 (396)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g 207 (396)
..++...|++++|...|+++.+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 778888888888888888877653
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.30 E-value=2.7e-06 Score=78.08 Aligned_cols=120 Identities=11% Similarity=0.011 Sum_probs=63.7
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChH
Q 041816 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229 (396)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 229 (396)
..+.+.|++++|++.+++.++.... +..++..+..+|.+.|++++|+..+++..+.. +.+..+|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3445556666666666666655322 45566666666666666666666666666553 234555666666666666666
Q ss_pred HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHH--HhccCCHHHHHHHHHH
Q 041816 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG--LCKEGFVDKAKELFLQ 278 (396)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~ 278 (396)
+|++.+++..+.. +.+...+..+..+ +.+.|++++|++.+++
T Consensus 92 eA~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVK-------PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHS-------TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6666666655543 2233344444333 5555556666555554
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.28 E-value=3.5e-05 Score=56.44 Aligned_cols=96 Identities=15% Similarity=-0.020 Sum_probs=80.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc---HHHHHHH
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDA---VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN---VITYSTL 218 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~l 218 (396)
+..+...+...|++++|...|+.+.+..+. +. ..+..+..++...|++++|...|++..+.. +.+ ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 445667788999999999999999986533 33 577888999999999999999999998874 223 6778889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcC
Q 041816 219 INGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
..++...|++++|...|+++....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999998864
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.26 E-value=1.3e-05 Score=70.96 Aligned_cols=96 Identities=10% Similarity=-0.039 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------------CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFG---------------CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g---------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 243 (396)
.+..+...+.+.|++++|+..|++..+.- .+.+..+|..+..+|.+.|++++|+..+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 34555566666666666666666655410 01123334444444444444444444444444432
Q ss_pred CCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
+.+...|..+..+|...|++++|.+.|++..+
T Consensus 304 ------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 ------PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22334444444444444444444444444443
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.25 E-value=3.4e-06 Score=61.09 Aligned_cols=86 Identities=10% Similarity=-0.028 Sum_probs=43.4
Q ss_pred cCChhhHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHH
Q 041816 155 MGRVSHGFVVLGRILRSC--FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 232 (396)
.|++++|+..|++.++.+ -+.+...+..+..+|...|++++|+..|++..+.. +-+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555442 11234445555555555555555555555555543 224455555555555566666666
Q ss_pred HHHHHHHhc
Q 041816 233 NLFEEMANG 241 (396)
Q Consensus 233 ~~~~~~~~~ 241 (396)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 655555543
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.24 E-value=1.4e-05 Score=70.67 Aligned_cols=121 Identities=10% Similarity=-0.051 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh----------------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILR----------------SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 208 (396)
+..+...+.+.|++++|+..|++.++ .. +.+..+|..+..+|.+.|++++|+..+++..+..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 45555566666666666666666654 11 2246678888888889999999999999888764
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHH
Q 041816 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274 (396)
Q Consensus 209 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 274 (396)
+.+..+|..+..+|...|++++|+..|+++.+.. +.+...+..+..++...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888889999999999999999888764 4466677777777776666665543
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.23 E-value=2.6e-06 Score=61.69 Aligned_cols=86 Identities=16% Similarity=0.050 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccC
Q 041816 190 ESRIMEAAALFTKLKAFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267 (396)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 267 (396)
.|++++|+..|++..+.+ -+.+..++..+..+|...|++++|+..+++..+.. +.+...+..+..++.+.|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-------PNHQALRVFYAMVLYNLG 75 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHcC
Confidence 467777777887777653 23345667777777777888888888888777764 455667777777777778
Q ss_pred CHHHHHHHHHHHhhC
Q 041816 268 FVDKAKELFLQMKDK 282 (396)
Q Consensus 268 ~~~~a~~~~~~m~~~ 282 (396)
++++|...|++....
T Consensus 76 ~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 76 RYEQGVELLLKIIAE 90 (117)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 888887777776654
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.19 E-value=2.7e-05 Score=59.87 Aligned_cols=103 Identities=13% Similarity=0.054 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------c-----ccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKF------G-----VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
.+......+.+.|++++|+..|++........ . ...+.+...|..+..+|.+.|++++|+..++.....
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34445555555555555555555554430000 0 000223456777777777778888887777777765
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 283 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
+.. +...|..+..+|...|++++|...|++..+.
T Consensus 93 ~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 433 5667777777777777777777777777764
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.19 E-value=2.8e-05 Score=59.82 Aligned_cols=64 Identities=13% Similarity=0.045 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
...|..+..+|.+.|++++|+..+++..... +.+...|..+..+|...|++++|...|+.....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3455555556666666666666666655543 344555556666666666666666666665544
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.17 E-value=9.8e-06 Score=70.83 Aligned_cols=94 Identities=10% Similarity=-0.011 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 293 (396)
.|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.... +...+..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~ 303 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRE 303 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 45556666666666666666666665543 344556666666666666666666666665543221 2233333
Q ss_pred HHHH-HHhcCCHHHHHHHHHHHH
Q 041816 294 LIHG-FCYANDWNEANCLLIEMM 315 (396)
Q Consensus 294 li~~-~~~~~~~~~a~~~~~~~~ 315 (396)
+... ....+..+++..+|..|.
T Consensus 304 L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 304 LRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 3322 122333444444554444
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.11 E-value=1.2e-05 Score=70.32 Aligned_cols=96 Identities=11% Similarity=0.000 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHH
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (396)
.|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-------p~~~~a~~~ 303 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-------PDDKAIRRE 303 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHH
Confidence 67788888889999999999999888764 3467888889999999999999999999887754 334555555
Q ss_pred HHHH-HhccCCHHHHHHHHHHHhhC
Q 041816 259 IIDG-LCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 259 li~~-~~~~g~~~~a~~~~~~m~~~ 282 (396)
+... ....+..+.+.++|..|...
T Consensus 304 L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 304 LRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 5554 33456677777888887654
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.09 E-value=7.9e-05 Score=56.33 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCccHHHH----HHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAF-------GCKPNVITY----STLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------g~~~~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
.|..+..++.+.|++++|+..+++..+. . +-+...| .....++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6677777777777777777777776664 3 2345667 77888888888888888888887664
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.07 E-value=7.8e-05 Score=56.36 Aligned_cols=96 Identities=15% Similarity=-0.018 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCK-----------PNVITYSTLINGLCRTGHTIVALNLFEEMANG------ 241 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-----------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------ 241 (396)
.+......+.+.|++++|+..|++..+.... .+...|..+..++.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444555556666666666666666654211 02338999999999999999999999999886
Q ss_pred -CCCCcccccCCHhhH----HHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 242 -NGKFGVVCKPNTVTY----TTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 242 -~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
. +.+...| .....++...|++++|+..|++..+
T Consensus 93 ~~-------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LN-------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TT-------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4 3456678 8889999999999999999998865
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.06 E-value=0.00022 Score=53.10 Aligned_cols=110 Identities=10% Similarity=-0.081 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cC
Q 041816 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY----AN 302 (396)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~ 302 (396)
+.++|+++|++..+.+ .++. . |...|...+.+++|.+.|++..+.| +...+..|...|.. .+
T Consensus 10 d~~~A~~~~~~aa~~g-------~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-------EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp HHHHHHHHHHHHHHTT-------CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CHHHHHHHHHHHHcCC-------CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCc
Confidence 4556666666666554 1222 2 5555555566666666666666554 55556666666655 56
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 041816 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK----NGKMDEASRLLELMILRG 353 (396)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 353 (396)
++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 76 d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 76 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666666666553 34455555555655 566666666666666554
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.06 E-value=0.00018 Score=53.61 Aligned_cols=83 Identities=12% Similarity=-0.025 Sum_probs=33.6
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh---
Q 041816 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA----ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR--- 224 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~--- 224 (396)
|...+.+++|.++|++..+.| +...+..|..+|.. .+++++|...|++..+.| +...+..|...|..
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKG 108 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCC
Confidence 333334444444444444432 33333344444433 344444444444444332 23333334444443
Q ss_pred -cCChHHHHHHHHHHHh
Q 041816 225 -TGHTIVALNLFEEMAN 240 (396)
Q Consensus 225 -~g~~~~a~~~~~~~~~ 240 (396)
.++.++|..+|++..+
T Consensus 109 ~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACR 125 (138)
T ss_dssp SCCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 3444444444444433
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.00 E-value=2.5e-05 Score=71.45 Aligned_cols=131 Identities=8% Similarity=-0.125 Sum_probs=94.2
Q ss_pred HHHhcCChhhHHHHHHHHHhc-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C--CCccHHHHH
Q 041816 151 CFCKMGRVSHGFVVLGRILRS-----CF--TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF-----G--CKPNVITYS 216 (396)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g--~~~~~~~~~ 216 (396)
.+...|++++|+.++++.++. |. +....+++.|...|...|++++|+.++++..+. | .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999888753 21 113567899999999999999999999887643 3 122356789
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCC-CcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 217 TLINGLCRTGHTIVALNLFEEMANGNGK-FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
.|...|...|++++|+.++++....... +|...+....+.+.+..++...+.+++|..+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887643211 1111122234556666777778888888888888765
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.99 E-value=4.6e-05 Score=54.67 Aligned_cols=81 Identities=11% Similarity=-0.019 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHH
Q 041816 88 NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167 (396)
Q Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (396)
++|+..|+..++..+ .+...|..+..++...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQGT--DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 457778888877655 477788888888888899999999888887754 23566778888888888888888888888
Q ss_pred HHhc
Q 041816 168 ILRS 171 (396)
Q Consensus 168 ~~~~ 171 (396)
.++.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=4.8e-05 Score=69.59 Aligned_cols=126 Identities=10% Similarity=-0.019 Sum_probs=97.0
Q ss_pred HHHhcCChhHHHHHHHHHHhC--C-CCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhc-----CC--CCCHHHHH
Q 041816 116 CLAKTKHYDTVLSLFKRLNST--G-LFPD----LYTYNILINCFCKMGRVSHGFVVLGRILRS-----CF--TPDAVAFT 181 (396)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~--~-~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~~ 181 (396)
.+..+|++++|+.++++.++. . +.++ ..+++.|...|...|++++|..++++.++. |. +....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887642 1 1122 457889999999999999999999988652 32 12356789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCC--ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 182 SLIKGLCAESRIMEAAALFTKLKAF-----GCK--PNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~-----g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
.|...|...|++++|+.++++..+. |.. ....+.+.+..++...+.+++|+.+|..+.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987643 421 22445677788888999999999999988763
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=1.1e-05 Score=57.36 Aligned_cols=64 Identities=16% Similarity=0.093 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555543 224555555555555566666666665555554
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.87 E-value=0.00011 Score=52.56 Aligned_cols=78 Identities=14% Similarity=0.020 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
|++.|++.++..+ .+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++...
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444332 234444555555555555555555555554442 22344455555555555555555555555443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.0001 Score=52.12 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=43.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 211 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
+...+..+...+...|++++|+..|++..... +.+...+..+..++.+.|++++|++.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34556666667777777777777777766654 445666666677777777777777777776654
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.81 E-value=0.0003 Score=47.58 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
..+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++....
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444444555555555555555544432 223444555555555555555555555555443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.77 E-value=0.00028 Score=47.70 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|.+.|++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3445555555555566666666665555543 334445555555555555555555555555443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.67 E-value=0.00016 Score=54.51 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHH
Q 041816 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRT-----------GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 261 (396)
+++|+..|++..+.. +.+..+|..+..+|... |++++|++.|++..+. .|+...|...+.
T Consensus 62 ~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--------~P~~~~y~~al~ 132 (158)
T 1zu2_A 62 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 567888888877764 33567777788888776 4899999999999985 466666555444
Q ss_pred H
Q 041816 262 G 262 (396)
Q Consensus 262 ~ 262 (396)
.
T Consensus 133 ~ 133 (158)
T 1zu2_A 133 M 133 (158)
T ss_dssp H
T ss_pred H
Confidence 3
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.66 E-value=0.00019 Score=54.12 Aligned_cols=70 Identities=7% Similarity=0.006 Sum_probs=40.1
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChh----------HHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD----------TVLSLFKRLNSTGLFPDLYTYNILINCF 152 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~p~~~~~~~li~~~ 152 (396)
+.+.+++|++.++..++..|. +...|+.+..++...++++ +|+..|++..+... -+..+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-CcHHHHHHHHHHH
Confidence 345577777777777776654 6777777777777766654 44444444444321 1333444444444
Q ss_pred Hhc
Q 041816 153 CKM 155 (396)
Q Consensus 153 ~~~ 155 (396)
...
T Consensus 91 ~~l 93 (158)
T 1zu2_A 91 TSF 93 (158)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.55 E-value=0.00039 Score=48.38 Aligned_cols=62 Identities=21% Similarity=0.099 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
...+..+...|...|++++|+..|++..+.. +.+..+|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444555555555555555555544442 1233444455555555555555555555444
No 208
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.49 E-value=0.0031 Score=61.93 Aligned_cols=98 Identities=6% Similarity=0.006 Sum_probs=54.3
Q ss_pred HhcCChhHHHH-HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041816 118 AKTKHYDTVLS-LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196 (396)
Q Consensus 118 ~~~~~~~~a~~-~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 196 (396)
...+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.-. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 34566666655 43111 112222556666666676666665442110 112334456777777
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 7665432 255667777777777777777777777654
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.46 E-value=0.00075 Score=46.86 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=51.3
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 210 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
.+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356777888888888888888888888888765 45566788888888888888888888887654
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.36 E-value=0.019 Score=56.33 Aligned_cols=152 Identities=17% Similarity=0.170 Sum_probs=88.7
Q ss_pred HhcCChhhHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHH
Q 041816 153 CKMGRVSHGFV-VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231 (396)
Q Consensus 153 ~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a 231 (396)
...+++++|.+ ++..+ ++......++..+.+.|.+++|.++.+.-. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 35577777765 44111 112223666777777788887776553211 112334567888888
Q ss_pred HHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 311 (396)
+++.+. ..+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++.
T Consensus 672 ~~~~~~------------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 672 RDLLTD------------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTT------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHh------------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 777543 23567788888888888888888888887653 334444455566666655555
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349 (396)
Q Consensus 312 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 349 (396)
+.....| -++....+|.+.|++++|.+++.++
T Consensus 731 ~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5555443 2233344455556666666665544
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.21 E-value=0.0062 Score=52.74 Aligned_cols=73 Identities=11% Similarity=0.014 Sum_probs=56.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 041816 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362 (396)
Q Consensus 286 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 362 (396)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 467777777777777788888888888888765 77777777788888888888888888888874 66666543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.21 E-value=0.017 Score=49.98 Aligned_cols=142 Identities=9% Similarity=-0.011 Sum_probs=97.5
Q ss_pred CCHhhHHHHHHHHHh--c---CChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHh---cC-Ch-hhHH---HHHHHHHh
Q 041816 105 PPLTSFNLLFGCLAK--T---KHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCK---MG-RV-SHGF---VVLGRILR 170 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~---~g-~~-~~a~---~~~~~~~~ 170 (396)
.+...|...+.+... . .+..+|+.+|++..+.. |+ ...|..+.-++.- .+ .. .... ..+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 577888888776543 2 34578999999998854 54 3444443333321 11 11 1111 12222111
Q ss_pred -cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccc
Q 041816 171 -SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249 (396)
Q Consensus 171 -~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 249 (396)
...+.+..++..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++....+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~------- 340 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR------- 340 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence 1225578888888887888899999999999999985 788888888999999999999999999998854
Q ss_pred cCCHhhHHH
Q 041816 250 KPNTVTYTT 258 (396)
Q Consensus 250 ~~~~~~~~~ 258 (396)
|...+|..
T Consensus 341 -P~~~t~~~ 348 (372)
T 3ly7_A 341 -PGANTLYW 348 (372)
T ss_dssp -CSHHHHHH
T ss_pred -CCcChHHH
Confidence 66666543
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.14 E-value=0.0027 Score=57.00 Aligned_cols=85 Identities=7% Similarity=-0.119 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC-CHHHHHHHHH
Q 041816 301 ANDWNEANCLLIEMMDQ---GVQPD----VVTFNVIMDELCKNGKMDEASRLLELMILR-----G-VNP-NTSTFSTLMD 366 (396)
Q Consensus 301 ~~~~~~a~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~~~~li~ 366 (396)
.|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++..+- | -.| ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666777666665531 11122 245666777777777777777776666532 1 112 2345666667
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 041816 367 GFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 367 ~~~~~g~~~~A~~~~~~m~ 385 (396)
.|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777766654
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.09 E-value=0.0041 Score=55.90 Aligned_cols=99 Identities=12% Similarity=-0.029 Sum_probs=70.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCC-CcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh-----CCCC-C-Chh
Q 041816 218 LINGLCRTGHTIVALNLFEEMANGNGK-FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD-----KNIN-P-DVV 289 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~-p-~~~ 289 (396)
.+..+.+.|++++|+.++++..+.... ++...+....+++.+..+|...|++++|+.++++..+ .|.. | ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355577889999999999998875422 2222222346788889999999999999999888753 1211 1 234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 290 TYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
+++.|...|...|++++|..+++++.+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 577788888888888888888877653
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.05 E-value=0.0023 Score=57.52 Aligned_cols=88 Identities=6% Similarity=-0.179 Sum_probs=69.2
Q ss_pred hcCChhhHHHHHHHHHhc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-Cc-cHHHHHHHH
Q 041816 154 KMGRVSHGFVVLGRILRS---CFTP----DAVAFTSLIKGLCAESRIMEAAALFTKLKAF-----GC-KP-NVITYSTLI 219 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g~-~~-~~~~~~~ll 219 (396)
..|++++|+.++++.++. -+.| ...+++.|...|...|++++|+.++++..+. |. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999999988762 1122 3567899999999999999999999987643 31 12 356789999
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 041816 220 NGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
..|...|++++|+.++++..+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.05 E-value=0.0024 Score=43.92 Aligned_cols=55 Identities=16% Similarity=0.091 Sum_probs=27.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVI-TYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
.+.+.|++++|...|++..+.. +.+.. .+..+..+|...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444455555555555554432 22334 4555555555555555555555555543
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.03 E-value=0.0044 Score=55.73 Aligned_cols=93 Identities=9% Similarity=-0.081 Sum_probs=73.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C--CCccHH
Q 041816 148 LINCFCKMGRVSHGFVVLGRILRSC---FTP----DAVAFTSLIKGLCAESRIMEAAALFTKLKAF-----G--CKPNVI 213 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g--~~~~~~ 213 (396)
.+..+.+.|++++|+.++++.++.. +.+ ...+++.+...|...|++++|+.++++..+. | .+....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667899999999999998642 112 3567899999999999999999999987643 2 112356
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
+++.|...|...|++++|+.++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 788999999999999999999988765
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.77 E-value=0.18 Score=41.90 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCcccccC--CHhhHHHHHHH
Q 041816 193 IMEAAALFTKLKAFGCKPN---VITYSTLINGLCRT-----GHTIVALNLFEEMANGNGKFGVVCKP--NTVTYTTIIDG 262 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~ 262 (396)
...|...+++..+.. |+ ...|..+...|.+. |+.++|.+.|++..+.. | +..++......
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--------P~~~id~~v~YA~~ 248 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--------SAHDPDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--------CTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--------CCCCchHHHHHHHH
Confidence 566777777777763 44 56788888888884 88888888888888854 4 36777777888
Q ss_pred Hhcc-CCHHHHHHHHHHHhhCCCC--CChhhHHHH
Q 041816 263 LCKE-GFVDKAKELFLQMKDKNIN--PDVVTYNSL 294 (396)
Q Consensus 263 ~~~~-g~~~~a~~~~~~m~~~~~~--p~~~~~~~l 294 (396)
++.. |+.+++.+.+++....... |+....+.+
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 8774 8888888888888877665 554444443
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.052 Score=41.51 Aligned_cols=44 Identities=14% Similarity=0.275 Sum_probs=21.1
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 203 (396)
+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 445555554444433 13444555555555555555555555444
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.74 E-value=0.015 Score=39.48 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 211 NVITYSTLINGLCRTGH---TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 211 ~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
+...+..+..++...++ .++|..++++....+ +.++.....+...+.+.|++++|+..|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444444444433332 455555555555543 334445555555555555555555555555544
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.72 E-value=0.095 Score=37.76 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCH
Q 041816 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269 (396)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (396)
.|.+++..++..+.... .+..-||.++--....-+-+-..++++.+-... |. ..+|+.
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF---------Di----------s~C~Nl 77 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF---------DL----------DKCQNL 77 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS---------CG----------GGCSCT
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc---------Cc----------HhhhcH
Confidence 46666666666666553 244445555544444455555555555544332 11 223444
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349 (396)
Q Consensus 270 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 349 (396)
......+-.+-. +.......++.....|.-++-.+++.++.. +.+|++...-.+..+|.+.|+..+|.+++.++
T Consensus 78 KrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 78 KSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp HHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444444433321 444555566666677777777777766543 23566666667777777777777777777777
Q ss_pred HhCCCC
Q 041816 350 ILRGVN 355 (396)
Q Consensus 350 ~~~g~~ 355 (396)
.++|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 776653
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.70 E-value=0.014 Score=39.82 Aligned_cols=60 Identities=22% Similarity=0.153 Sum_probs=46.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHh-hHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 041816 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV-TYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 284 (396)
....+...|++++|...++++.+.. +.+.. .+..+..+|...|++++|.+.|++..+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4556777888888888888888764 44566 788888888888888888888888877643
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.61 E-value=0.021 Score=42.52 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHHHH
Q 041816 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN---DWNEANCLLIEMMDQGVQP--DVVTFNVIMDELCKNGKMDEA 342 (396)
Q Consensus 268 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 342 (396)
....+.+-|.+....+. ++..+...+..++++.+ +.+++..++++..+.+ .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45566666666666554 47777777777788777 5668888888887754 24 244555566677888888888
Q ss_pred HHHHHHHHhCCCCCCH
Q 041816 343 SRLLELMILRGVNPNT 358 (396)
Q Consensus 343 ~~~~~~m~~~g~~p~~ 358 (396)
++.++.+.+. .|+.
T Consensus 91 ~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHHH--CTTC
T ss_pred HHHHHHHHhc--CCCC
Confidence 8888888874 5543
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.15 Score=39.00 Aligned_cols=126 Identities=11% Similarity=0.054 Sum_probs=85.2
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+.-.
T Consensus 17 ~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred hcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 347789999888876 4678899999999999999999999988653 344555566677777666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
.+-+.....| -++.....+.-.|+++++.++|.+..+ .|.. .-.....|..+.|.++.+++.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHhC
Confidence 5555554444 134445556667999999998865432 1111 112233566777888877664
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.49 E-value=0.14 Score=36.93 Aligned_cols=141 Identities=13% Similarity=0.076 Sum_probs=98.2
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 041816 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301 (396)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 301 (396)
+.-.|..++..++..+..... +..-||-+|--....-+-+-..++++.+-+. .|. ..+
T Consensus 17 ~ildG~v~qGveii~k~~~ss---------ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C 74 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---------TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKC 74 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---------CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGC
T ss_pred HHHhhhHHHHHHHHHHHcCCC---------CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------Hhh
Confidence 344678888888888877643 4555555555555555666666666665442 122 234
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041816 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381 (396)
Q Consensus 302 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 381 (396)
|+.......+-.+ ..+.......++.+...|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++
T Consensus 75 ~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 75 QNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp SCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 4444444443332 134456677788889999999999999996543 5788999999999999999999999999
Q ss_pred HHHHhCCCC
Q 041816 382 VSMESMGCK 390 (396)
Q Consensus 382 ~~m~~~g~~ 390 (396)
.+.-+.|++
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 999999974
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.44 E-value=0.038 Score=37.50 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=42.3
Q ss_pred ChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 287 DVVTYNSLIHGFCYAND---WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 287 ~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
+...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55566666666654443 577777777777643 234556666667777777777777777777764
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.29 E-value=0.033 Score=46.29 Aligned_cols=65 Identities=14% Similarity=0.281 Sum_probs=36.3
Q ss_pred HhHHHHHHHHHhc-----CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcC
Q 041816 143 YTYNILINCFCKM-----GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE-SRIMEAAALFTKLKAFG 207 (396)
Q Consensus 143 ~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~g 207 (396)
..|..+...|... |+.++|.+.|++.++.++.-+..++......++.. |+.+++.+.+++.....
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 3455555555553 56666666666666554322355555555555553 66666666666666554
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.21 E-value=0.048 Score=37.83 Aligned_cols=67 Identities=7% Similarity=0.009 Sum_probs=42.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG------LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 172 (396)
+...+..|...+.+.++++.|...|+...+.. -.+....+..+..++.+.|+++.|...+++..+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34455667777777777777777777765421 12244556666667777777777777777666653
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.21 E-value=0.077 Score=36.75 Aligned_cols=61 Identities=15% Similarity=0.015 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 180 FTSLIKGLCAESRIMEAAALFTKLKAFG------CKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
+-.+...+.+.|+++.|...|+...+.- -.....++..+..++.+.|+++.|...++++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344444444455555544444433320 112344455555555555555555555555554
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.19 E-value=0.034 Score=41.40 Aligned_cols=66 Identities=15% Similarity=0.058 Sum_probs=28.0
Q ss_pred CHHhHHHHHHHHHhcC---ChhhHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041816 141 DLYTYNILINCFCKMG---RVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 141 ~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (396)
+..+.-.+..++++.+ ++++++.+++.+.+.. +.-....+-.+.-+|.+.|++++|.++++.+.+.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4444444444444444 3334444444444432 1012233333444444555555555555554443
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.82 E-value=0.27 Score=36.27 Aligned_cols=114 Identities=12% Similarity=0.097 Sum_probs=80.8
Q ss_pred CCCCHhhHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHH-hHHHHHH------HHHhcCChhhHHHHHHHHH
Q 041816 103 SPPPLTSFNLLFGCLAKTKHY------DTVLSLFKRLNSTGLFPDLY-TYNILIN------CFCKMGRVSHGFVVLGRIL 169 (396)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~p~~~-~~~~li~------~~~~~g~~~~a~~~~~~~~ 169 (396)
.|.|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .|...|. .+...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 346888888888888888888 8888999988763 455432 1111111 1234589999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 041816 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219 (396)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 219 (396)
+..-.- ..+|......=.+.|+++.|.+++.+....+..| .......+
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~ 135 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIAL 135 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHH
Confidence 763333 7788888888889999999999999999887554 33344333
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.79 E-value=1.2 Score=43.76 Aligned_cols=276 Identities=15% Similarity=0.035 Sum_probs=149.0
Q ss_pred CCccccCChhHHHHHHHHHHhcC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--C-----CCHHhHHHHHH
Q 041816 79 QGDITAITPNEAFCIFDYMLNMR-PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL--F-----PDLYTYNILIN 150 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----p~~~~~~~li~ 150 (396)
.|.+..|+.++++.+++..+..+ ...+.+..=..+.-+.+..|..+++.+++.......- . +....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 45667778888888887765422 1112223333344445666666677777766554210 0 00111122222
Q ss_pred HHHhcCC-hhhHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 041816 151 CFCKMGR-VSHGFVVLGRILRSCFTPDA--VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227 (396)
Q Consensus 151 ~~~~~g~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 227 (396)
+++-.|. -+++.+.+..++...- ... ..--.|...+...|+-+....++..+.+.. .-+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 2333343 2455666666655321 111 111233344556788888888887776532 1122222333344557889
Q ss_pred hHHHHHHHHHHHhcCCCCcccccCCHhhH--HHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 041816 228 TIVALNLFEEMANGNGKFGVVCKPNTVTY--TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305 (396)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 305 (396)
.+.+..+.+.+.... .|....- .++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+
T Consensus 540 ~e~~~~li~~L~~~~-------dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 540 QELADDLITKMLASD-------ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp GGGGHHHHHHHHHCS-------CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCS
T ss_pred hHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHH
Confidence 998888888887643 2222222 234557888899888888998887642 223333333333445567777
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041816 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM-DEASRLLELMILRGVNPNTSTFSTLMDGF 368 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 368 (396)
.+.+++..+.+.+ .|...--..+.-+....|.. .++..++..+.. .+|..+-...+.++
T Consensus 612 ~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 612 TVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp SHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 7777776666543 45555444455555545443 577888888874 34554444444343
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.57 E-value=0.22 Score=36.69 Aligned_cols=115 Identities=12% Similarity=0.111 Sum_probs=76.7
Q ss_pred cCCHhhHHHHHHHHhccCCH------HHHHHHHHHHhhCCCCCChh-hHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 041816 250 KPNTVTYTTIIDGLCKEGFV------DKAKELFLQMKDKNINPDVV-TYNSLIH------GFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~~~-~~~~li~------~~~~~~~~~~a~~~~~~~~~ 316 (396)
+.|..+|-..+....+.|+. +...++|++.... ++|+.. .|...|. .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45777888888887777888 8888888887653 344321 1211111 11344788999999998876
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041816 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367 (396)
Q Consensus 317 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 367 (396)
.+-.- ...|......-.+.|++..|.+++...+..+.+ +...+...+.-
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~n 137 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRN 137 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHh
Confidence 53333 666777777777889999999999998887544 44445544443
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.10 E-value=0.15 Score=36.43 Aligned_cols=64 Identities=9% Similarity=0.024 Sum_probs=28.5
Q ss_pred ChhhHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 287 DVVTYNSLIHGFCYANDWNE---ANCLLIEMMDQGVQP--DVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
+..+-..+..++.+..+... ++.++.++.+.+ .| .....-.|.-++.+.|++++|.+.++.+.+
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444444444444444333 555555544432 12 112222334445555555555555555554
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.88 Score=40.94 Aligned_cols=262 Identities=12% Similarity=0.048 Sum_probs=148.7
Q ss_pred CChhHHHHHHHHHHhc----CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHhHHHHHHHH----Hhc
Q 041816 85 ITPNEAFCIFDYMLNM----RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS-TGLFPDLYTYNILINCF----CKM 155 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~----~~~ 155 (396)
+++++|++.+-.+.+. ...+........++..|.+.++++...+.+..+.. +|..+.. ...+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 5677887776655542 22224566788899999999999999888776643 3433222 23333333 223
Q ss_pred CChhhH--HHHHHHHHh--cC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCcc---HHHHHHHHHHH
Q 041816 156 GRVSHG--FVVLGRILR--SC-FTP---DAVAFTSLIKGLCAESRIMEAAALFTKLKAF--GCKPN---VITYSTLINGL 222 (396)
Q Consensus 156 g~~~~a--~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--g~~~~---~~~~~~ll~~~ 222 (396)
...+.. ..+.+.+.. .| +-. .......|...|...|++.+|..++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 332221 112211111 11 111 2334567888999999999999999998643 22111 45677788899
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcccccCC--HhhHHHHHHHHhccCCHHHHHHHHHHHhhC-CCCCChhhHHH----HH
Q 041816 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPN--TVTYTTIIDGLCKEGFVDKAKELFLQMKDK-NINPDVVTYNS----LI 295 (396)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~----li 295 (396)
...+++..|..++.++...... ...+|+ ...+..++..+...+++.+|.+.|.++... ...-|...+.. ++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~--~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v 265 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFK--NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIV 265 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcc--cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 9999999999999987431100 001222 235667778888899999999888887542 11113222221 11
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 041816 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN--GKMDEASRLLELMI 350 (396)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~ 350 (396)
....-.+....-..+.........-++...|..++.+|... .+++.+.+.|+...
T Consensus 266 ~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 266 YFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 11122222222223333333222235667788888888764 45666666555433
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.59 E-value=0.23 Score=47.55 Aligned_cols=127 Identities=13% Similarity=0.049 Sum_probs=82.0
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHC------CCCCC-H----
Q 041816 257 TTIIDGLCKEGF-VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN-DWNEANCLLIEMMDQ------GVQPD-V---- 323 (396)
Q Consensus 257 ~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~------~~~p~-~---- 323 (396)
..++..+...+. .+.|..+|+++......-+......++..+...+ +--+|..++.+..+. ...+. .
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 345555555666 5889999999988643222222233333333333 223455555554421 11111 1
Q ss_pred ------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 324 ------VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 324 ------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
.....=.+.|...|+++.|+++-++.... .+-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12222345577889999999999999986 4556899999999999999999999999887
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.29 E-value=8e-06 Score=72.14 Aligned_cols=121 Identities=14% Similarity=0.058 Sum_probs=64.0
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 041816 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330 (396)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 330 (396)
.++.||-.+-.+|...+.+.-|.-.--.+.- ...-...++..|-..|.+++-+.+++.-... -......|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence 3566777777777777776655444333321 1112334555666777777777777665532 133455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 041816 331 DELCKNGKMDEASRLLELMILR-GVNP------NTSTFSTLMDGFCLTGRVNHAK 378 (396)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~m~~~-g~~p------~~~~~~~li~~~~~~g~~~~A~ 378 (396)
-.|++- ++++.++.++..-.+ +++- ....|..++-.|.+-.++|.|.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 666664 344444433322221 1111 2344566666666666666553
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.20 E-value=0.29 Score=34.96 Aligned_cols=89 Identities=11% Similarity=0.055 Sum_probs=65.0
Q ss_pred CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHH---HHHHHHHHhhCCCC-CChhhHHHHHHHHHhc
Q 041816 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK---AKELFLQMKDKNIN-PDVVTYNSLIHGFCYA 301 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~ 301 (396)
.....+.+-|......+ .++..+-..+..++++..+... ++.+++++.+.+.+ -.......|.-++.+.
T Consensus 15 ~~l~~~~~~y~~e~~~~-------~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccC-------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence 34455566666665554 4777888888888888887666 89999998876411 1344566677788999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH
Q 041816 302 NDWNEANCLLIEMMDQGVQPDV 323 (396)
Q Consensus 302 ~~~~~a~~~~~~~~~~~~~p~~ 323 (396)
|++++|.+.++.+.+. .|+.
T Consensus 88 g~Y~~A~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQT--EPQN 107 (126)
T ss_dssp TCHHHHHHHHHHHHHH--CTTC
T ss_pred hhHHHHHHHHHHHHHh--CCCC
Confidence 9999999999999984 4643
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.99 E-value=2 Score=42.23 Aligned_cols=258 Identities=12% Similarity=0.030 Sum_probs=129.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCChhhHHHHHHHHHhcCC-------CCCHHHHHHHHHHH
Q 041816 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYT--YNILINCFCKMGRVSHGFVVLGRILRSCF-------TPDAVAFTSLIKGL 187 (396)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 187 (396)
....|+.++++.+++.....+-..+..+ -..+.-+....|...++.+++...+...- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456677777776665443110112222 22233344555655667776666654321 01111122222222
Q ss_pred --HhcCCHHHHHHHHHHHHhcCCCccHHHHH--HHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHH
Q 041816 188 --CAESRIMEAAALFTKLKAFGCKPNVITYS--TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263 (396)
Q Consensus 188 --~~~g~~~~a~~~~~~~~~~g~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (396)
.-.++- ++...+..+.... ........ +|...+.-.|+.+....++..+.+.. ..++.-...+.-++
T Consensus 464 a~~GS~~e-ev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-------~e~vrR~aalgLGl 534 (963)
T 4ady_A 464 AAMGSANI-EVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-------HGNITRGLAVGLAL 534 (963)
T ss_dssp HSTTCCCH-HHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-------CHHHHHHHHHHHHH
T ss_pred HhcCCCCH-HHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-------cHHHHHHHHHHHHh
Confidence 333443 4444444444321 11111122 23333445677777777777666532 22233333444455
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 041816 264 CKEGFVDKAKELFLQMKDKNINPDVVTY--NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341 (396)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 341 (396)
...|+.+.+..+.+.+.... .|....- .++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.
T Consensus 535 l~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 535 INYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 56788888888888777531 1122111 233456677888877777888877642 2233333333334445677666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 041816 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV-NHAKELFVSMES 386 (396)
Q Consensus 342 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 386 (396)
+.++++.+.+.+ .|....-..+.-+....|.. .++.+.+..+..
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 777776666543 44444444444455555543 567777777753
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.83 E-value=0.24 Score=43.80 Aligned_cols=74 Identities=7% Similarity=0.008 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 041816 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL-----RGVNPNTSTFS 362 (396)
Q Consensus 288 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 362 (396)
..+...++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-.
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3455666777778888888888887777543 45677888888888888888888888877654 37777766544
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.73 E-value=3.7 Score=36.86 Aligned_cols=193 Identities=8% Similarity=0.043 Sum_probs=109.8
Q ss_pred CChhhHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCccHHHHHHHHHHH----Hhc
Q 041816 156 GRVSHGFVVLGRILRS-----CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF-GCKPNVITYSTLINGL----CRT 225 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~----~~~ 225 (396)
|+++.|++.+-.+.+. ....+......++..|...|+++...+.+.-+.+. |..+.. ...+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 6788888877666542 23446777888999999999999888877666543 322222 23333322 223
Q ss_pred CChHHHHHHHHHHHhcCCCCcccccC---CHhhHHHHHHHHhccCCHHHHHHHHHHHhhC--CCCCC---hhhHHHHHHH
Q 041816 226 GHTIVALNLFEEMANGNGKFGVVCKP---NTVTYTTIIDGLCKEGFVDKAKELFLQMKDK--NINPD---VVTYNSLIHG 297 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~ 297 (396)
...+.... ...+..........+-. .......|...|...|++.+|.+++.++... +.... ...+...++.
T Consensus 108 ~~~d~~~~-~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 108 KSLDLNTR-ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp CTTHHHHH-HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CchhHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 33222111 11111111110000111 0112345677788888888888888887542 22111 2356666777
Q ss_pred HHhcCCHHHHHHHHHHHHH----CCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 298 FCYANDWNEANCLLIEMMD----QGVQPDV--VTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~----~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
|...+++.+|..++.++.. ....|+. ..+...+..+...+++.+|.+.|.++.+
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8888888888888877642 2222222 3455666667777788777777766654
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.42 E-value=0.73 Score=44.19 Aligned_cols=52 Identities=15% Similarity=0.007 Sum_probs=33.1
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 279 (396)
.+...|+++.|+.+-++..... |.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-------PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-------LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-------chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445666666666666666643 445666666777777777777666666665
No 243
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.39 E-value=3.1e-06 Score=74.71 Aligned_cols=225 Identities=12% Similarity=0.110 Sum_probs=160.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
..+.+|..|..+..+.++..+|++.|=+. -|+..|..+|....+.|.+++-+..+....+..- +..+=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHH
Confidence 45667999999999888888888765332 3666788999999999999999988877666533 344446789
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHh
Q 041816 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 264 (396)
-+|++.+++.+.++++. .||..-...+.+-|...|.++.|.-+|..+. -|.-|...+.
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------------N~akLAstLV 181 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------NFGRLASTLV 181 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------------CCTTTSSSSS
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------------cHHHHHHHHH
Confidence 99999998765544432 3566666778888888888888876665543 3444555667
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 041816 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344 (396)
Q Consensus 265 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 344 (396)
+.|++..|.+.-+ +. -+..||-.+-.+|...+++.-|...--.++-. +| -...++..|-..|-+++.+.
T Consensus 182 ~L~~yq~AVdaAr---KA---ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIs 250 (624)
T 3lvg_A 182 HLGEYQAAVDGAR---KA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELIT 250 (624)
T ss_dssp SCSGGGSSTTTTT---TC---CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTT
T ss_pred HHHHHHHHHHHHH---hc---CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHH
Confidence 7888877765432 22 27889999999999999999887766555532 22 22345667888999999888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 041816 345 LLELMILRGVNPNTSTFSTLMDGFCLT 371 (396)
Q Consensus 345 ~~~~m~~~g~~p~~~~~~~li~~~~~~ 371 (396)
+++.-... -.....+|+-|.-.|++-
T Consensus 251 LlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 251 MLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp THHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 88877643 234667777777666654
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.87 E-value=3.4 Score=42.24 Aligned_cols=146 Identities=14% Similarity=0.070 Sum_probs=100.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC------------
Q 041816 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN------------ 285 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------------ 285 (396)
++..+.+.+..+.+.++... ++.+....-.+..+|...|++++|.+.|.+... |+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~ 885 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREF 885 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhh-----------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccc
Confidence 44445556666655554432 234455556677889999999999999987531 110
Q ss_pred -----------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 286 -----------PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV----VTFNVIMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 286 -----------p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
.-..-|..++..+.+.+.++.+.++-...++....-+. ..|..+.+.+...|++++|...+-.+.
T Consensus 886 ~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 886 QEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 01123677888888999999999888877754222221 257889999999999999999998887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041816 351 LRGVNPNTSTFSTLMDGFCLTGRVNHA 377 (396)
Q Consensus 351 ~~g~~p~~~~~~~li~~~~~~g~~~~A 377 (396)
... --......|+..++..|..+.-
T Consensus 966 d~~--~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 966 TTP--LKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HSS--SCHHHHHHHHHHHHHHCCHHHH
T ss_pred CHH--HHHHHHHHHHHHHHhCCChhhh
Confidence 653 3456777888877777766544
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.73 E-value=1.2 Score=30.15 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+..+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555555555555554443
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.70 E-value=0.61 Score=41.14 Aligned_cols=73 Identities=10% Similarity=0.049 Sum_probs=60.1
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhH
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD-----QGVQPDVVTF 326 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~ 326 (396)
..+...++..+...|++++|...+..+..... .+...|..+|.++...|+..+|++.|+...+ .|+.|...+-
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34556677888899999999999999887643 3788999999999999999999999998764 4888876553
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.05 E-value=1.7 Score=31.27 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=34.6
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 285 NPDVVTYNSLIHGFCYAND---WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 285 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
.|+..+--.+..++.+..+ ..+++.++.++.+.+..-....+-.|.-++.+.|++++|++..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3445554444445554443 335566666665543111233344455566666666666666666665
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.66 E-value=2.2 Score=30.60 Aligned_cols=59 Identities=12% Similarity=0.237 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041816 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 365 (396)
+..+-++.+...++.|++......+++|.+.+|+..|.++|+-.+.+ ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44455555555566666666666666666666666666666666654 233334454443
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.40 E-value=8 Score=39.51 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=114.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc----C-------------
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS----C------------- 172 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~------------- 172 (396)
...++..+...+.++.+.++..... .+...--.+..++...|++++|.+.|.+.... .
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 3346666777788777776554432 24444456677788899999999988764210 0
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 041816 173 -----FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN----VITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (396)
Q Consensus 173 -----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 243 (396)
...-..-|..++..+-+.+.++.+.++-....+...+.+ ...|..+.+.+...|++++|...+-.+....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~- 968 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP- 968 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-
Confidence 001124567788888888888888888776665432212 2257888899999999999988888776543
Q ss_pred CCcccccCCHhhHHHHHHHHhccCC------------HHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 041816 244 KFGVVCKPNTVTYTTIIDGLCKEGF------------VDKAKELFLQMKDK--NINPDVVTYNSLIHGFCYANDWNEANC 309 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~li~~~~~~g~------------~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~ 309 (396)
.-......|+...+..|. .++..+++....+. .+...+.-|..|-.-+...|++.+|-.
T Consensus 969 -------~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~ 1041 (1139)
T 4fhn_B 969 -------LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAA 1041 (1139)
T ss_dssp -------SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHH
T ss_pred -------HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHH
Confidence 223445555555554444 44444444332211 111112234555555566677665544
Q ss_pred H-HHHHH
Q 041816 310 L-LIEMM 315 (396)
Q Consensus 310 ~-~~~~~ 315 (396)
+ |+.+.
T Consensus 1042 vmYe~~~ 1048 (1139)
T 4fhn_B 1042 IIYEKLS 1048 (1139)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4 44444
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.30 E-value=4.9 Score=29.27 Aligned_cols=72 Identities=11% Similarity=0.109 Sum_probs=45.9
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041816 285 NPDVVTYNSLIHGFCYAND---WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358 (396)
Q Consensus 285 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 358 (396)
.|+..+--.+..++.+..+ ..+++.+++++.+.+..-.....-.|.-++.+.|++++|++..+.+.+. .|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 4566666666666666654 4467777777776432112334445566778888888888888888874 5543
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.77 E-value=12 Score=31.66 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=47.1
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 041816 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA---NDWNEANCLLIEMMDQGVQPDVVTFNV 328 (396)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~ 328 (396)
++.....+...|.+.|++.+|...|-. |-.-|...+..++.-+... |...++.-++.+ .
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------a 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------L 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------H
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------H
Confidence 677888888999999999998887641 1111344555555444443 443333222211 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 041816 329 IMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 329 l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
+-.|...|+...|..+++...
T Consensus 195 -VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 -VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp -HHHHHHTTBHHHHHHHHHHHH
T ss_pred -HHHHHHhcCHHHHHHHHHHHH
Confidence 223455677888887777654
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.58 E-value=4.2 Score=30.53 Aligned_cols=58 Identities=12% Similarity=-0.028 Sum_probs=33.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC-CCCCH-------HhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTG-LFPDL-------YTYNILINCFCKMGRVSHGFVVLGRILR 170 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~ 170 (396)
-+..+...|.++.|+-+.+.+.... ..|+. .++..+.+++...|++.+|...|++.++
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445566677777766666543211 11221 2445566667777777777777777643
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.80 E-value=5.6 Score=26.98 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 195 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++++..+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555555555443
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.45 E-value=5 Score=35.79 Aligned_cols=99 Identities=8% Similarity=-0.023 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCccHHH--HH
Q 041816 144 TYNILINCFCKMGRVSHGFVVLGRILRS--CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF---GCKPNVIT--YS 216 (396)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---g~~~~~~~--~~ 216 (396)
+...+...|.+.|+++.|.+.+.++... +...-...+-..++.+...+++..+...+.+.... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4566777777778888888877777653 22334566677777777778888877777776432 22222211 01
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 217 TLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
.-...+...+++..|-..|-+.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11122344677777777776655443
No 255
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=85.91 E-value=2.4 Score=31.36 Aligned_cols=55 Identities=18% Similarity=0.191 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHH
Q 041816 124 DTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178 (396)
Q Consensus 124 ~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 178 (396)
+++.++|..|...|+--. +..|......+...|++.+|.++|..-++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 447888888877766433 4456777777888888888888888888877666443
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.39 E-value=9.9 Score=28.53 Aligned_cols=98 Identities=9% Similarity=0.019 Sum_probs=68.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------
Q 041816 144 TYNILINCFCKMGRVSHGFVVLGRILRSC-FTPD-------AVAFTSLIKGLCAESRIMEAAALFTKLKAFG-------- 207 (396)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-------- 207 (396)
++-.-++.+...|.++.|+-+.+.++... ..++ ..++..+.+++...|++..|...|++..+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455677788899999888877765421 1222 2356778889999999999999999853220
Q ss_pred ----------------CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 208 ----------------CKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 208 ----------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
...+...---+..+|.+.+++++|+.+++.+...
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1112233345788999999999999999886543
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.95 E-value=17 Score=30.92 Aligned_cols=165 Identities=10% Similarity=0.045 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH----HHHHHHhcCCCCCHHHHHHHHHH
Q 041816 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV----VLGRILRSCFTPDAVAFTSLIKG 186 (396)
Q Consensus 111 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~ 186 (396)
.++..-|.+.+++++|++++-.-. ..+.+.|+...|.+ +++-+.+.+.++|......++..
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 334445677788888888764432 12233344433333 33444455666777666666666
Q ss_pred HHhcCCHH-HHHHHHHHHH----hcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHH
Q 041816 187 LCAESRIM-EAAALFTKLK----AFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259 (396)
Q Consensus 187 ~~~~g~~~-~a~~~~~~~~----~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (396)
+.....-+ .=.++.+++. +.| ..-|......+...|.+.+++.+|...|- . + ..++...|..+
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g------~~~s~~~~a~m 173 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--G------TKESPEVLARM 173 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--S------CTTHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--c------CCchHHHHHHH
Confidence 66554311 1122222222 222 22356677788888999998888887773 1 2 12333555444
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315 (396)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (396)
+--+...+...++ +...-..++ -|.-.++...|..+++...
T Consensus 174 L~ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 174 EYEWYKQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 4433333321111 222222333 3455677777777666555
No 258
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.31 E-value=3.7 Score=31.95 Aligned_cols=88 Identities=9% Similarity=0.017 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhhHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK--TKHYDTVLSLFKRLNSTGLFP-DLYTYNILINCFCKMGRVSHGFV 163 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~ 163 (396)
+++++..|...... ..|+.....-+...-. .+...++.++|..|...|+-- -+..|......+...|++.+|.+
T Consensus 60 LErc~~~F~~~~rY---kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 60 MERCLIYIQDMETY---RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHTTCGGG---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcccccc---cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34444444444332 2455444333332222 455778899999988776543 34567778888888999999999
Q ss_pred HHHHHHhcCCCCCH
Q 041816 164 VLGRILRSCFTPDA 177 (396)
Q Consensus 164 ~~~~~~~~~~~~~~ 177 (396)
+|..-++.+-.|-.
T Consensus 137 Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 137 LLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHTTCBSHH
T ss_pred HHHHHHHcCCccHH
Confidence 99998888777644
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.11 E-value=19 Score=30.69 Aligned_cols=173 Identities=12% Similarity=0.071 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI----MEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
|.++..-|.+.+++++|++++..-.. .+.+.|+. |.+.-+++-+.+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34455567888999999987654321 12233443 233344455566677777777777777
Q ss_pred HHHhcCChH-HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041816 221 GLCRTGHTI-VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299 (396)
Q Consensus 221 ~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 299 (396)
.+......+ .=..+.+++..-...++....-|......+...|.+.+++.+|..-| +. |-.+....|..++.-+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--il--g~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--VL--GTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--TT--SCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--Hh--cCCchHHHHHHHHHHHH
Confidence 766655322 11222222221110000001235677788888999999999988877 22 33333456655555554
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
..+...++--+ .-..+ -.|...+++..|..+++...+
T Consensus 179 ~~~~~~e~dlf--------------iaRaV-L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 179 KQDESHTAPLY--------------CARAV-LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTSCGGGHHHH--------------HHHHH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCccHHHH--------------HHHHH-HHHHHhCCHHHHHHHHHHHHH
Confidence 44433222222 22222 235556788888777666553
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.08 E-value=21 Score=31.26 Aligned_cols=233 Identities=10% Similarity=-0.048 Sum_probs=126.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC---HHhHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCC-H----HH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPD---LYTYNILINCFCKMG-RVSHGFVVLGRILRSCFTPD-A----VA 179 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~---~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~-~----~~ 179 (396)
...|...|.+.|+.++..+++...... +..+- ......++..+.... ..+.-.++..+.++..-.-. . ..
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777888888888888887766431 11111 223456666665543 23333344444333210001 1 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHh
Q 041816 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKP-----NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254 (396)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (396)
-..++..|...|++.+|.+++.++.+.=-.. -..++..-++.|...++..++...+......... +.+++.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a----i~~~p~ 177 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA----IYCPPK 177 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----SCCCHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc----CCCCHH
Confidence 2367889999999999999998887641111 1445667788899999999999999887653210 113332
Q ss_pred hHH----HHHHHHh-ccCCHHHHHHHHHHHhhC-C-CC-C---ChhhHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCC
Q 041816 255 TYT----TIIDGLC-KEGFVDKAKELFLQMKDK-N-IN-P---DVVTYNSLIHGFCYANDWNEANCLLI-EMMDQGVQPD 322 (396)
Q Consensus 255 ~~~----~li~~~~-~~g~~~~a~~~~~~m~~~-~-~~-p---~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~p~ 322 (396)
.-. .-.-.+. ..+++..|...|-+..+. . .. | +...|..+.... .++..+...++. .....-..|.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pe 255 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCcc
Confidence 221 1223455 789999999888776421 1 10 1 122233332222 233223222221 2111112455
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 323 VVTFNVIMDELCKNGKMDEASRLLELM 349 (396)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 349 (396)
...+..++.+|. .+++.+...+++..
T Consensus 256 i~~l~~L~~a~~-~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 256 IDAMKSVAEASH-KRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 555666666554 46676666665554
No 261
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=83.83 E-value=3.5 Score=30.99 Aligned_cols=71 Identities=10% Similarity=0.034 Sum_probs=47.7
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 178 (396)
.|+.....-+...-.. +++.++|..|...|+--. +..|......+...|++.+|.++|..-++.+-.|-..
T Consensus 61 nD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 61 SDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp TCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred cCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 4555444444322222 447778888888776543 4456777778888889999999998888887776544
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.36 E-value=7.4 Score=34.69 Aligned_cols=101 Identities=10% Similarity=-0.138 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHh-
Q 041816 178 VAFTSLIKGLCAESRIMEAAALFTKLKAF--GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV- 254 (396)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~- 254 (396)
.+...+...|.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...++++....... ..++..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~---~d~~~~~ 208 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG---GDWERRN 208 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---CCTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC---CCHHHHH
Confidence 35678899999999999999999999875 333346778889999999999999999999876532110 112221
Q ss_pred -hHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 255 -TYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 255 -~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
....-...+...+++..|...|-+...
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 111222334567899999998887654
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.21 E-value=11 Score=27.19 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 196 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
..+-++.+....+.|++.+..+.+++|.+.+|+..|.++++..+..
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3444444444455555555555555555555555555555555443
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.79 E-value=11 Score=27.05 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 041816 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 171 (396)
Q Consensus 125 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 171 (396)
+++.+++.+.+.+..-....+..+.-++.+.|++++|.+..+.+++.
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 44555555544331111223333444455555555555555555543
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.69 E-value=8.9 Score=25.90 Aligned_cols=76 Identities=24% Similarity=0.313 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHH-HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 165 (396)
.++|..+-+++...+. ..+.+ .-+..+...|+|++|+.+.+.+. .||...|..|.. .+.|..+++...+
T Consensus 23 HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 5666666666655432 12111 12334556677777776665543 466666655543 3556666666666
Q ss_pred HHHHhcC
Q 041816 166 GRILRSC 172 (396)
Q Consensus 166 ~~~~~~~ 172 (396)
.++...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 5555554
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.44 E-value=8.6 Score=25.93 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHH-HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 165 (396)
.++|..+-+++...+. ..+.+ .-+..+...|+|++|+.+.+.+. .||...|..|.. .+.|..+++...+
T Consensus 22 HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ----DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 5666666666655432 12111 12334556677777776655443 466666655543 3566666666666
Q ss_pred HHHHhcC
Q 041816 166 GRILRSC 172 (396)
Q Consensus 166 ~~~~~~~ 172 (396)
.++...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 5665554
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.18 E-value=9.4 Score=25.80 Aligned_cols=78 Identities=10% Similarity=0.055 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 346 (396)
...++|..+-+-+...+. ....--+-+..+.+.|+|++|..+.+.. ..||...|-+|.. .+.|-.+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345555555555544432 1111111223344556666665544332 2455555544432 3445555555555
Q ss_pred HHHHhC
Q 041816 347 ELMILR 352 (396)
Q Consensus 347 ~~m~~~ 352 (396)
.++..+
T Consensus 93 ~~la~s 98 (116)
T 2p58_C 93 NRLARS 98 (116)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 455444
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.64 E-value=9.3 Score=25.77 Aligned_cols=77 Identities=12% Similarity=-0.031 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347 (396)
Q Consensus 268 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 347 (396)
..++|..+-+-+...+. ....--+-+..+.+.|+|++|..+.+.. ..||...|-+|. -.+.|-.+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 45555555555544432 1111111223344556666655544322 245555544432 234555555555555
Q ss_pred HHHhC
Q 041816 348 LMILR 352 (396)
Q Consensus 348 ~m~~~ 352 (396)
++..+
T Consensus 93 ~la~s 97 (115)
T 2uwj_G 93 GLGGS 97 (115)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 55544
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.08 E-value=21 Score=27.80 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=44.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041816 301 ANDWNEANCLLIEMMDQGVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358 (396)
Q Consensus 301 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 358 (396)
.+....+..+|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4446788888888887766544 456777788888889999999999888888777733
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.04 E-value=6.1 Score=32.36 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=36.6
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
...+.|++++|+.....-.+.. |.|...-..++..+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-------PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455667777777666666654 556666667777777777777777766666554
No 271
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=78.17 E-value=4.9 Score=31.86 Aligned_cols=70 Identities=16% Similarity=0.098 Sum_probs=51.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 177 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 177 (396)
.|+.....-+. |++. .+++.++|..|...|+--. +..|......+...|++.+|.++|..-++.+-.|-.
T Consensus 115 nD~RyLklWl~-Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 115 DDVRYLRIWMQ-YVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp TCHHHHHHHHH-HHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHH-HHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 45554444443 2332 3578899999998876543 556788888899999999999999999998777644
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.96 E-value=9 Score=31.26 Aligned_cols=123 Identities=16% Similarity=0.136 Sum_probs=62.2
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh--HHHHHHHHH
Q 041816 260 IDGLCKEGFVDKAKELFLQMKDKNINP---DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT--FNVIMDELC 334 (396)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~ 334 (396)
+...+..|+.+.+..+++.. |..+ +..-.+.+..+ +..+.......+++.+.+.|..++... -...+...+
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~ 227 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 33444567766555555431 3332 22233334333 455666666777777888877665432 123344455
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc
Q 041816 335 KNGKMDEASRLLELMILRGVNPNT---STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394 (396)
Q Consensus 335 ~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 394 (396)
+.|..+-+..+++. .|..++. .-.+. +...++.|.. ++.+-+.+.|..|+..
T Consensus 228 ~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~-l~~A~~~~~~----~i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 228 EKKHLGLVQRLLEQ---EHIEINDTDSDGKTA-LLLAVELKLK----KIAELLCKRGASTDCG 282 (285)
T ss_dssp HTTCHHHHHHHHHS---SSCCTTCCCTTSCCH-HHHHHHTTCH----HHHHHHHHHSSCSCCS
T ss_pred HcCCHHHHHHHHhc---cCCCccccCCCCCcH-HHHHHHcCcH----HHHHHHHHcCCCCCcc
Confidence 66777655544441 3433322 11222 3334455665 3455566667777653
No 273
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=75.74 E-value=21 Score=26.04 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=10.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 041816 183 LIKGLCAESRIMEAAALFTKLKA 205 (396)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~ 205 (396)
|.-++.+.|++++|.++.+.+.+
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33344444444444444444444
No 274
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=68.01 E-value=42 Score=26.32 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=8.8
Q ss_pred HhcCChhhHHHHHHHHHhcC
Q 041816 153 CKMGRVSHGFVVLGRILRSC 172 (396)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~ 172 (396)
+..|+.+....+++.+.+.+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 34455444444444443333
No 275
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.82 E-value=49 Score=27.09 Aligned_cols=112 Identities=8% Similarity=0.041 Sum_probs=66.4
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcC
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL----YTYNILINCFCKMG 156 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g 156 (396)
+++.|++++|+.....-++..|. |...-..++..+|-.|+|+.|.+-++...+.. |+. ..|..+|++
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~--da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH-----
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH-----
Confidence 45677888888888888777664 77777778888888888888888887776642 332 233333332
Q ss_pred ChhhHHHHHHHHHhcCCCC-----CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhc
Q 041816 157 RVSHGFVVLGRILRSCFTP-----DAVAFTSLIKGLC--AESRIMEAAALFTKLKAF 206 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 206 (396)
+..-.++...+-.| .......++.+.. ..|+.++|..+-+++.+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222222222111 2333444444443 347777777777666543
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=65.58 E-value=61 Score=27.29 Aligned_cols=165 Identities=10% Similarity=0.045 Sum_probs=86.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH----HHHHHHhcCCCCCHHHHHHHHHH
Q 041816 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV----VLGRILRSCFTPDAVAFTSLIKG 186 (396)
Q Consensus 111 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~ 186 (396)
.++..-|.+.+++++|++++..-.. .+.+.|+...|.+ +++-+.+.+.+++......++..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3344456667778887777654321 2233344443333 34444455667777777777766
Q ss_pred HHhcCCHH-HHHHHHHHH----HhcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHH
Q 041816 187 LCAESRIM-EAAALFTKL----KAFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259 (396)
Q Consensus 187 ~~~~g~~~-~a~~~~~~~----~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (396)
+.....-+ .=.++++++ .+.| ..-++.....+...|.+.|++.+|...|-... ..+...+..+
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----------~~s~~~~a~~ 171 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT----------HDSMIKYVDL 171 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----------HHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----------CccHHHHHHH
Confidence 65532111 112222222 2222 12367778888889999999988887764210 1134445444
Q ss_pred HHHHhcc---CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 260 IDGLCKE---GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315 (396)
Q Consensus 260 i~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (396)
+--+... |...++ +...-..++ .|.-.++...|..+++...
T Consensus 172 l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 172 LWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 4433333 433332 111112222 3445677888887777654
No 277
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=65.26 E-value=41 Score=28.28 Aligned_cols=67 Identities=9% Similarity=0.142 Sum_probs=41.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 041816 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND--WNEANCLLIEMMDQGVQPD 322 (396)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p~ 322 (396)
....++.-|...|+.++|.+.++++..-... .......+..+.-+.++ .+....++..+.+.|+-+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 3467788888899999999999998632111 22334444444444333 4556677777776654443
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.46 E-value=67 Score=27.66 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCC
Q 041816 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR--VNHAKELFVSMESMGCKH 391 (396)
Q Consensus 325 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 391 (396)
....++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+...|+-+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 3578888999999999999999999632111 23334445555554433 456778888888777543
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=63.89 E-value=55 Score=26.21 Aligned_cols=89 Identities=15% Similarity=0.056 Sum_probs=42.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhC--CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 041816 259 IIDGLCKEGFVDKAKELFLQMKDK--NINP----DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332 (396)
Q Consensus 259 li~~~~~~g~~~~a~~~~~~m~~~--~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 332 (396)
-+..+....++++|.+++++..+. +..+ ........+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 456666777777777777766431 1111 0111122222222222222333333333 22 3344445555566
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 041816 333 LCKNGKMDEASRLLELMI 350 (396)
Q Consensus 333 ~~~~g~~~~A~~~~~~m~ 350 (396)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 666677777766665554
No 280
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=63.34 E-value=32 Score=27.00 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=43.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHH--HHHHHHHHHh
Q 041816 114 FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT--YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVA--FTSLIKGLCA 189 (396)
Q Consensus 114 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 189 (396)
+...+..|+.+.+..+++.+.+.|..++... -...+...+..|+.+ +++.+++.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 4455677888888888887766665444321 112334445566654 3444445554432211 1123334445
Q ss_pred cCCHHHHHHHHHH
Q 041816 190 ESRIMEAAALFTK 202 (396)
Q Consensus 190 ~g~~~~a~~~~~~ 202 (396)
.|+.+-+..+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 6666655555544
No 281
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=63.23 E-value=77 Score=27.71 Aligned_cols=237 Identities=10% Similarity=-0.002 Sum_probs=132.5
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcC-CC---CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCccHHHH--
Q 041816 143 YTYNILINCFCKMGRVSHGFVVLGRILRSC-FT---PDAVAFTSLIKGLCAE-SRIMEAAALFTKLKAFGCKPNVITY-- 215 (396)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~g~~~~~~~~-- 215 (396)
.....|...|.+.|+.++..+++......- .- -.......++..+... +..+.-.++..+..+... .+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345678888999999999888887765421 11 1344567778877764 334444444444433210 011122
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC--CCCCChh
Q 041816 216 ----STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK--NINPDVV 289 (396)
Q Consensus 216 ----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~ 289 (396)
.-++..|...|++.+|..++..+.+.-...+. -.--...+..-+.+|...+++.++...+...... .+.+++.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd-~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDD-KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC-THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 35788999999999999999988775321000 0011345666778899999999999999887542 2223333
Q ss_pred hHHH----HHHHHH-hcCCHHHHHHHHHHHHHC-C-C-CC---CHhhHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCC
Q 041816 290 TYNS----LIHGFC-YANDWNEANCLLIEMMDQ-G-V-QP---DVVTFNVIMDELCKNGKMDEASRLLE-LMILRGVNPN 357 (396)
Q Consensus 290 ~~~~----li~~~~-~~~~~~~a~~~~~~~~~~-~-~-~p---~~~~~~~l~~~~~~~g~~~~A~~~~~-~m~~~g~~p~ 357 (396)
.... -...+. ..++|..|...|-+..+. . . .| +...|..+.... .++..+...++. +....-..|.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pe 255 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCcc
Confidence 2221 122345 789999999988776531 1 1 11 122333332222 233223222221 2111113455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 358 TSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 358 ~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
...+..++.+| ..+++.+...+++..
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 55566666655 556666655555543
No 282
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=62.34 E-value=8.9 Score=31.75 Aligned_cols=229 Identities=10% Similarity=0.028 Sum_probs=101.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH
Q 041816 84 AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 163 (396)
..+..+..+++. ..++...+..-++.| ...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+
T Consensus 9 ~~~~~~v~~lL~---~~~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v-- 78 (285)
T 3kea_A 9 TWKSKQLKSFLS---SKDTFKADVHGHSAS-YYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIV-- 78 (285)
T ss_dssp GCCHHHHHHHHH---STTTTCCCTTSCCHH-HHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHH--
T ss_pred hcCHHHHHHHHH---hCCCCccCCCCCCHH-HHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHH--
Confidence 344455554444 334443444444443 44455677665544443 44333322112344445566765544
Q ss_pred HHHHHHhcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHH---HHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 164 VLGRILRSCFTPDAV--AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI---TYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
+.+++.|..++.. .-.+.+...+..|+.+-+.-+++. |..++.. -+.+.+...+..|+.+-+..+
T Consensus 79 --~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L---- 148 (285)
T 3kea_A 79 --KILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF---- 148 (285)
T ss_dssp --HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH----
T ss_pred --HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHH----
Confidence 3344455443321 111233444566776655544443 4333321 123344445566665544333
Q ss_pred HhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041816 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (396)
.+.+.. ..+...-.+.+...+..|+.+-+.-+++.-...... +..-.+..+...+..|+. ++.+.+.+.|
T Consensus 149 l~~g~~-----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~g 218 (285)
T 3kea_A 149 LSEIPS-----TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYD 218 (285)
T ss_dssp HTTSCT-----TCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSC
T ss_pred HhCCCc-----cccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcC
Confidence 333311 112212233444455667777666666554333222 222223323333344553 3444555667
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 319 VQPDVVTFNVIMDELCKNGKMDEASRLLE 347 (396)
Q Consensus 319 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 347 (396)
..++..... -...|+.+-+.-+++
T Consensus 219 ad~~~~~~~-----a~~~~~~~iv~~Ll~ 242 (285)
T 3kea_A 219 INIYSANLE-----NVLLDDAEIAKMIIE 242 (285)
T ss_dssp BCSTTTTGG-----GGTTTCHHHHHHHHH
T ss_pred CCCCCCChh-----hhhcCCHHHHHHHHH
Confidence 666655421 133455544444443
No 283
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=62.12 E-value=45 Score=25.34 Aligned_cols=160 Identities=13% Similarity=0.053 Sum_probs=82.4
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcccccCC-HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChh---hHHHHHHH
Q 041816 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV---TYNSLIHG 297 (396)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~ 297 (396)
.++.|+.+....++..-.. ..+ ..-+ +.+...+..|+.+.-.++.+.+.+.|..++.. -++.|..+
T Consensus 13 Aa~~g~~~~~~~l~~~~~~---------~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEKGYE---------DKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL 82 (186)
T ss_dssp HHHHSCHHHHHHHHHHSSS---------CHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred HHHcCCHHHHHHHHhcCcc---------cccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 3566777776555543111 111 1122 34445556677776677777788877766543 23334333
Q ss_pred HHh-cCCHHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHhcCCH-HHHHHHHHHHHh-CCCCCCHHHH--HHHHHHHH
Q 041816 298 FCY-ANDWNEANCLLIEMMDQGVQPDVVT---FNVIMDELCKNGKM-DEASRLLELMIL-RGVNPNTSTF--STLMDGFC 369 (396)
Q Consensus 298 ~~~-~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~-~~A~~~~~~m~~-~g~~p~~~~~--~~li~~~~ 369 (396)
+.. ..+.....++.+.+++.|..++... .+..+...+..|.. ..-..+++.+.+ .|..++.... .+-+....
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~ 162 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK 162 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence 322 2344455677778888887766432 21222222333332 344567777777 7766543221 12233445
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC
Q 041816 370 LTGRVNHAKELFVSMESMGCKH 391 (396)
Q Consensus 370 ~~g~~~~A~~~~~~m~~~g~~p 391 (396)
+.|..+-..-+.+.+.+.+++.
T Consensus 163 ~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 163 RCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp TTTCHHHHHHHHHHHHHHTCCC
T ss_pred HcCCHHHHHHHHHHHHHHhccc
Confidence 6666654444444455555554
No 284
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.88 E-value=26 Score=28.42 Aligned_cols=216 Identities=10% Similarity=-0.002 Sum_probs=104.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH---HHHHHHHH
Q 041816 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAV---AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV---ITYSTLIN 220 (396)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~ll~ 220 (396)
..+...++.|+.+.... +++.|..++.. .-.+.+...+..|+.+-+..+ .+.|..++. .-. ..+.
T Consensus 7 ~~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~-t~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQ----LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL----LRHGADPVLRKKNGA-TPFL 77 (285)
T ss_dssp HHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCC-CHHH
T ss_pred hHHHHHHHcCCHHHHHH----HHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHH----HHcCCCCcccCCCCC-CHHH
Confidence 44555667788765544 44555443321 112345556667877654444 444544332 112 2333
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChh-----------
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV----------- 289 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----------- 289 (396)
..+..|+.+-+..++ +.+... -..+...++.+. ..+..|+.+-+ +.+.+.|..++..
T Consensus 78 ~A~~~~~~~~v~~Ll----~~g~~~---~~~~~~g~t~L~-~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~~~~~~~ 145 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFL----SKGADV---NECDFYGFTAFM-EAAVYGKVKAL----KFLYKRGANVNLRRKTKEDQERLR 145 (285)
T ss_dssp HHHHHTCHHHHHHHH----HTTCCT---TCBCTTCCBHHH-HHHHTTCHHHH----HHHHHTTCCTTCCCCCCHHHHHTT
T ss_pred HHHHcCCHHHHHHHH----HcCCCC---CccCcccCCHHH-HHHHhCCHHHH----HHHHHhCCCcccccccHHHHHhhc
Confidence 445566665444444 344111 012222333333 34455665544 4444455444322
Q ss_pred --hHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--H
Q 041816 290 --TYNSLIHGFCYANDWNEANCLLIEMMDQ-GVQPDV---VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST--F 361 (396)
Q Consensus 290 --~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~ 361 (396)
-.+ .+...+..|+.+-+. .+.+. |..++. ...+.+.. .+..|......++.+.+.+.|..++... -
T Consensus 146 ~~g~t-~L~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g 219 (285)
T 1wdy_A 146 KGGAT-ALMDAAEKGHVEVLK----ILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERG 219 (285)
T ss_dssp CCCCC-HHHHHHHHTCHHHHH----HHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTS
T ss_pred cCCCc-HHHHHHHcCCHHHHH----HHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCC
Confidence 122 333444566655444 34443 544432 23333333 3445665556777788888887765432 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCc
Q 041816 362 STLMDGFCLTGRVNHAKELFVSMES-MGCKHTV 393 (396)
Q Consensus 362 ~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~ 393 (396)
.+.+...++.|+.+-+ +.+.+ .|..++.
T Consensus 220 ~t~L~~A~~~~~~~~v----~~Ll~~~g~~~~~ 248 (285)
T 1wdy_A 220 KTPLILAVEKKHLGLV----QRLLEQEHIEIND 248 (285)
T ss_dssp CCHHHHHHHTTCHHHH----HHHHHSSSCCTTC
T ss_pred CcHHHHHHHcCCHHHH----HHHHhccCCCccc
Confidence 2344555667776544 44444 5666554
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=60.81 E-value=81 Score=27.14 Aligned_cols=69 Identities=7% Similarity=0.108 Sum_probs=44.0
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHh
Q 041816 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND--WNEANCLLIEMMDQGVQPDVV 324 (396)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~ 324 (396)
....++.-|...|+.++|.+.++++..-... .......+..+.-+.++ .+....++..+...|+-+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3577888899999999999999998643222 23334445555544333 345777777777766544333
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=60.25 E-value=23 Score=29.16 Aligned_cols=229 Identities=10% Similarity=-0.033 Sum_probs=106.6
Q ss_pred cCChhHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041816 120 TKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198 (396)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 198 (396)
..+..+..+++.. .++ ..|..-.+ .+...+..|+.+-+..++ +.|..++..--.+.+...+..|+.+-+..
T Consensus 9 ~~~~~~v~~lL~~---~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~ 80 (285)
T 3kea_A 9 TWKSKQLKSFLSS---KDTFKADVHGHS-ASYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKI 80 (285)
T ss_dssp GCCHHHHHHHHHS---TTTTCCCTTSCC-HHHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHH
T ss_pred hcCHHHHHHHHHh---CCCCccCCCCCC-HHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 3455555555543 232 12333333 344455667766554444 44433332212334555566777665544
Q ss_pred HHHHHHhcCCCccH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHH
Q 041816 199 LFTKLKAFGCKPNV---ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275 (396)
Q Consensus 199 ~~~~~~~~g~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 275 (396)
++ +.|..++. .-++ .+...+..|+.+-+..+++.-.... ..+...+.+.+...+..|+.+-+..
T Consensus 81 Ll----~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~-------~~~~~g~~t~L~~A~~~~~~~~v~~- 147 (285)
T 3kea_A 81 LL----FSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFVKKNWRLM-------FYGKTGWKTSFYHAVMLNDVSIVSY- 147 (285)
T ss_dssp HH----HTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCGGGG-------GCSSSGGGSHHHHHHHTTCHHHHHH-
T ss_pred HH----HCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHHhcCCCCC-------ccCCCCCCCHHHHHHHcCCHHHHHH-
Confidence 44 44544432 1222 3344456677766555555421111 1222232344444556676654443
Q ss_pred HHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041816 276 FLQMKDKNINP-DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354 (396)
Q Consensus 276 ~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 354 (396)
+.+.|..+ +...-.+.+...+..|+.+-+..+++.-..-.. .|..-.+..+...+..|.. ++.+.+.+.|.
T Consensus 148 ---Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~ga 219 (285)
T 3kea_A 148 ---FLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDI 219 (285)
T ss_dssp ---HHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCB
T ss_pred ---HHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCC
Confidence 44444333 221333444455677887766666655433221 1222223323334445554 45555667777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041816 355 NPNTSTFSTLMDGFCLTGRVNHAKELFV 382 (396)
Q Consensus 355 ~p~~~~~~~li~~~~~~g~~~~A~~~~~ 382 (396)
.++..... -...|+.+-+.-+++
T Consensus 220 d~~~~~~~-----a~~~~~~~iv~~Ll~ 242 (285)
T 3kea_A 220 NIYSANLE-----NVLLDDAEIAKMIIE 242 (285)
T ss_dssp CSTTTTGG-----GGTTTCHHHHHHHHH
T ss_pred CCCCCChh-----hhhcCCHHHHHHHHH
Confidence 77655421 134565554444443
No 287
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=60.10 E-value=37 Score=25.01 Aligned_cols=67 Identities=7% Similarity=0.133 Sum_probs=42.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 041816 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND--WNEANCLLIEMMDQGVQPD 322 (396)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p~ 322 (396)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+.+.++-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567888899999999999999998632111 23334444555544332 4567777777776665443
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=60.09 E-value=65 Score=25.79 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=45.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC--CCCC----CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNST--GLFP----DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (396)
-++.+....++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+.+.. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 456677788899999888876532 2221 111122222222222222233333333322 3345555566666
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 041816 187 LCAESRIMEAAALFTKLK 204 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~ 204 (396)
+.+.|+-++|..+|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777665543
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=59.43 E-value=50 Score=24.31 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041816 306 EANCLLIEMMDQGVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 356 (396)
.+..+|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 36666666666654433 3345666666666677777777777666665555
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=58.80 E-value=46 Score=23.65 Aligned_cols=66 Identities=8% Similarity=0.154 Sum_probs=40.3
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 041816 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND--WNEANCLLIEMMDQGVQP 321 (396)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p 321 (396)
....++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3466788888899999999999988632111 22333444444444332 355667777777665443
No 291
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=57.65 E-value=15 Score=28.87 Aligned_cols=11 Identities=9% Similarity=0.160 Sum_probs=5.0
Q ss_pred HhcCChhHHHH
Q 041816 118 AKTKHYDTVLS 128 (396)
Q Consensus 118 ~~~~~~~~a~~ 128 (396)
++.|+.+.+..
T Consensus 17 ~~~g~~~~~~~ 27 (240)
T 3eu9_A 17 TQYGIYERCRE 27 (240)
T ss_dssp HHTTCHHHHHH
T ss_pred HHcCChHHHHH
Confidence 44555444333
No 292
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=55.78 E-value=9.8 Score=30.74 Aligned_cols=56 Identities=13% Similarity=-0.066 Sum_probs=33.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHh-------HHHHHHHHH--hcCChhhHHHHHHHHH
Q 041816 114 FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT-------YNILINCFC--KMGRVSHGFVVLGRIL 169 (396)
Q Consensus 114 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-------~~~li~~~~--~~g~~~~a~~~~~~~~ 169 (396)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3345667888888888887766665554332 233433332 5677777766666543
No 293
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=53.77 E-value=70 Score=27.20 Aligned_cols=218 Identities=11% Similarity=0.038 Sum_probs=104.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL---YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (396)
+..-++.| ...+..|+.+.+..++ +.|..++. .-++ .+...+..|+.+-+. .+++.|..++...-.+
T Consensus 17 d~~g~t~L-~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENMEKI-HVAARKGQTDEVRRLI----ETGVSPTIQNRFGCT-ALHLACKFGCVDTAK----YLASVGEVHSLWHGQK 86 (364)
T ss_dssp CHHHHHHH-HHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCC-HHHHHHHHCCHHHHH----HHHHHCCCCCCBTTBC
T ss_pred CCCCCCHH-HHHHHcCCHHHHHHHH----HcCCCccccCCCCCc-HHHHHHHcCCHHHHH----HHHHCCCCccccCCCC
Confidence 44444444 4445668866555554 44544433 2222 344455667765444 4444443333312223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCccH--------------------HHHHHHHHHHHhcC--ChHHHHHHHHHHHh
Q 041816 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNV--------------------ITYSTLINGLCRTG--HTIVALNLFEEMAN 240 (396)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~--------------------~~~~~ll~~~~~~g--~~~~a~~~~~~~~~ 240 (396)
.+...+..|+.+-+..+++.....|..++. .-.+ .+...+..| +.+-+..+++.
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~~~v~~Ll~~--- 162 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT-ALHWCVGLGPEYLEMIKILVQL--- 162 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCC-HHHHHHHSCGGGHHHHHHHHHH---
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCC-HHHHHHHcCCchHHHHHHHHHc---
Confidence 445556778888888888776555544333 1122 333445556 55544444443
Q ss_pred cCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh-CCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD-KNINP---DVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
+... -..|..-.+.| ...+..|+.+-+..+++.-.. .+..+ +..-.+.|. ..+..|+.+ +++.+++
T Consensus 163 -ga~~---~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~ 232 (364)
T 3ljn_A 163 -GASP---TAKDKADETPL-MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWED----VAMRFVE 232 (364)
T ss_dssp -TCCT---TCCCTTSCCHH-HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHH----HHHHHHT
T ss_pred -CCCC---cccCCCCCCHH-HHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHH----HHHHHHH
Confidence 2100 01222223333 334566777766666654322 01001 222223333 334566654 4444555
Q ss_pred CCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 317 QGVQPDVV---TFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 317 ~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
.|..++.. -.+. +...+..|..+-+..+++.
T Consensus 233 ~gad~~~~d~~g~tp-L~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 233 MGIDVNMEDNEHTVP-LYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TTCCTTCCCTTSCCH-HHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCH-HHHHHHhChHHHHHHHHHc
Confidence 66555432 2223 3344556777777666664
No 294
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=53.19 E-value=1e+02 Score=25.82 Aligned_cols=103 Identities=13% Similarity=0.056 Sum_probs=51.8
Q ss_pred HHHHHhhCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 275 LFLQMKDKNINPDVV---TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD---VVTFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 275 ~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
+.+.+.+.|..++.. -.+. +...+..|..+.+..++.. .|..++ ..-.+.|.. .++.|..+ +.+.
T Consensus 221 i~~lLl~~gad~n~~d~~g~t~-L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~-A~~~g~~~----iv~~ 291 (337)
T 4g8k_A 221 ITHLLLDHGADVNVRGERGKTP-LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLL-AVELKLKK----IAEL 291 (337)
T ss_dssp HHHHHHHTTCCTTCCCGGGCCH-HHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHH-HHHTTCHH----HHHH
T ss_pred HHHHHHHCCCCCCCcCCCCCCH-HHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHH-HHHcCCHH----HHHH
Confidence 344445566554432 2233 3344567777655544321 233332 222233333 34566654 4455
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 041816 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393 (396)
Q Consensus 349 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 393 (396)
+++.|..++..+ .+...++.|+.+ +.+-+.+.|-.||.
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 567777776543 333445667654 55667778877764
No 295
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.39 E-value=34 Score=27.07 Aligned_cols=53 Identities=9% Similarity=0.111 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041816 305 NEANCLLIEMMDQGVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357 (396)
Q Consensus 305 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 357 (396)
+.+..+|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 577789999998876554 45678888888899999999999999988877773
No 296
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=50.86 E-value=1.6e+02 Score=27.57 Aligned_cols=251 Identities=8% Similarity=-0.013 Sum_probs=127.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041816 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190 (396)
Q Consensus 111 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (396)
+.-+..+.+.+++...+.++.. .+.+...-.....+....|+..+|......+-..|. .....+..++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHC
Confidence 3445556666777766664432 123444444566666677777667666666655542 2344556666666655
Q ss_pred CCHH--HHHHHHHHHHhcCC-----------CccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHh--
Q 041816 191 SRIM--EAAALFTKLKAFGC-----------KPNVI-TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV-- 254 (396)
Q Consensus 191 g~~~--~a~~~~~~~~~~g~-----------~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-- 254 (396)
|.+. ....=++.+...|- +++.. ....++..+. +...+...... ..++..
T Consensus 150 g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~-----------~~~~~~~~ 215 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----------TGATDFTR 215 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----------SCCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc-----------cCCChhhH
Confidence 5432 22222233333221 11110 0111111111 11111111111 012221
Q ss_pred -hHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 041816 255 -TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN----SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329 (396)
Q Consensus 255 -~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 329 (396)
.+...+.-+.+ .+.+.|...+........ .+..... .+.......+...++...+....... .+.......
T Consensus 216 ~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 291 (618)
T 1qsa_A 216 QMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERR 291 (618)
T ss_dssp HHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHH
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHH
Confidence 11112222333 378999999988865331 2333222 23333334453456666666655432 344444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 330 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
+....+.|+++.|...|+.|...... ...-.-=+..++...|+.++|..+|+.+..
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 55556779999999999988764221 233333355677889999999999998764
No 297
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=50.42 E-value=34 Score=25.93 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=7.5
Q ss_pred HhcCChhHHHHHHH
Q 041816 118 AKTKHYDTVLSLFK 131 (396)
Q Consensus 118 ~~~~~~~~a~~~~~ 131 (396)
+..|+.+.+..++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 44566655555543
No 298
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=49.54 E-value=1.5e+02 Score=26.66 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 041816 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 165 (396)
+++-|+++..+. ..|.--..|..-.+.+...|++++|.++-....+ |+-.+..|.+.+-..=...|+..--+.+|
T Consensus 344 n~~lA~~lA~R~----~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 344 NPDLALRMAVRN----NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CHHHHHHHHHHT----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CHHHHHHHHHhc----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 456555554443 2323444566667778888999988888766654 45556777665555444556666777788
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
..+++.| ..+..----+++.-...|+.+..++.+.+ ..+..+...-..+ +..+...|+.+|.+..
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEELGDLV-----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHHHH-----HHHCSHHHHHHHHHHC
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHhHhhh-----hhcCHHHHHHHHHHcC
Confidence 8777776 33444334455555566666655555433 2233333322222 3445666666666654
No 299
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=48.80 E-value=15 Score=29.59 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=14.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 041816 365 MDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 365 i~~~~~~g~~~~A~~~~~~m~~ 386 (396)
+...++.|+.+-+.-++++-..
T Consensus 229 L~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhCCC
Confidence 3445577888777777766554
No 300
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.66 E-value=1.7e+02 Score=29.12 Aligned_cols=48 Identities=10% Similarity=0.101 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC
Q 041816 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNT----STFSTLMDGFCLTG 372 (396)
Q Consensus 325 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g 372 (396)
-|..++..+-+.+.++.+.++-+..++.--..|. ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5788899999999999999998888865222233 36777777776654
No 301
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.46 E-value=1.2e+02 Score=25.40 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 041816 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR--VNHAKELFVSMESMGCK 390 (396)
Q Consensus 326 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 390 (396)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 467888899999999999999998531111 12333444444444333 45566788888766653
No 302
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=48.40 E-value=62 Score=23.47 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=48.7
Q ss_pred HHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHhcCC
Q 041816 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV---TFNVIMDELCKNGK 338 (396)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~ 338 (396)
..++.|+.+....+++.-...-...+..-++.+. ..+..|+.+ +++.+.+.|..++.. -.+. +...+..|+
T Consensus 14 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~ 87 (165)
T 3twr_A 14 EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLH-FAAGYNRVS----VVEYLLQHGADVHAKDKGGLVP-LHNACSYGH 87 (165)
T ss_dssp HHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHcCCCCccccccCCCCHHH-HHHHcChHH----HHHHHHhcCCCCCccCCCCCCH-HHHHHHcCc
Confidence 3455567666655554321110111222223333 334556644 334444455444322 1222 333345566
Q ss_pred HHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 041816 339 MDEASRLLELMILRGVNPNTS---TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393 (396)
Q Consensus 339 ~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 393 (396)
.+-+ +.+.+.|..++.. -.+. +...+..|+.+ +.+.+.+.|..++.
T Consensus 88 ~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~ga~~~~ 136 (165)
T 3twr_A 88 YEVA----ELLVKHGAVVNVADLWKFTP-LHEAAAKGKYE----ICKLLLQHGADPTK 136 (165)
T ss_dssp HHHH----HHHHHTTCCTTCCCTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTTC
T ss_pred HHHH----HHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCcc
Confidence 5533 3344444444321 1122 23334556654 34444455665554
No 303
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=48.35 E-value=1.1e+02 Score=25.97 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 180 FTSLIKGLCAESRIMEAAALFTKLK 204 (396)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~ 204 (396)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3456666666677777766666653
No 304
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=47.81 E-value=42 Score=24.97 Aligned_cols=44 Identities=7% Similarity=-0.037 Sum_probs=18.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcC
Q 041816 148 LINCFCKMGRVSHGFVVLGRILRS--CFTPDAVAFTSLIKGLCAES 191 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g 191 (396)
++..+.+.+..-.|.++++.+.+. +...+..|.-.-+..+...|
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444455555554444 33333333333344444443
No 305
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=47.48 E-value=90 Score=23.64 Aligned_cols=30 Identities=7% Similarity=-0.201 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (396)
...++.+...|...|+.++|++.+..--..
T Consensus 114 EfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 114 EFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 345667777777888888888888765443
No 306
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=47.24 E-value=78 Score=22.90 Aligned_cols=20 Identities=10% Similarity=0.076 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHHhcCCCCCH
Q 041816 158 VSHGFVVLGRILRSCFTPDA 177 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~ 177 (396)
.-.|.++++.+.+.+...+.
T Consensus 33 h~ta~ei~~~l~~~~~~is~ 52 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINI 52 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCH
T ss_pred CCCHHHHHHHHHhhCCCCCH
Confidence 34455555555444433333
No 307
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.19 E-value=38 Score=25.64 Aligned_cols=13 Identities=8% Similarity=-0.041 Sum_probs=6.4
Q ss_pred HhcCChhhHHHHH
Q 041816 153 CKMGRVSHGFVVL 165 (396)
Q Consensus 153 ~~~g~~~~a~~~~ 165 (396)
+..|+.+....++
T Consensus 13 ~~~g~~~~v~~ll 25 (201)
T 3hra_A 13 ANQRDTKKVKEIL 25 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 3445555544444
No 308
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.12 E-value=1.9e+02 Score=26.39 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=43.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCH--HhH-HHHHHHHHhcCChhhHHHHHHHHHhcC
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDL--YTY-NILINCFCKMGRVSHGFVVLGRILRSC 172 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~--~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~ 172 (396)
...+|.++..|...+.++.|..+..+..--. ..++. ..| ..+.+.+.-.+++.+|.+.+....+.-
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 4578888888888888999998888774110 01111 122 234556667788888888888877653
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.94 E-value=93 Score=22.83 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC--HHHHHHHHHHHhhCCCC
Q 041816 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF--VDKAKELFLQMKDKNIN 285 (396)
Q Consensus 215 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 285 (396)
.+.++.-|...|+.++|.+.++++.... -....+...+..++-+.++ .+.+..++..+...++-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-------f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-------FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-------GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-------chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4556667777777777777777764221 1122333444444444322 44566667666665433
No 310
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=43.25 E-value=94 Score=22.65 Aligned_cols=46 Identities=9% Similarity=0.035 Sum_probs=19.7
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHH
Q 041816 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVA 179 (396)
Q Consensus 133 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 179 (396)
+.+.|+.++.. -..++..+...+..-.|.++++.+.+.+...+..|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aT 63 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISS 63 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHH
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhh
Confidence 34445443222 23344444444445555555555555443333333
No 311
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=42.92 E-value=1.1e+02 Score=23.55 Aligned_cols=56 Identities=13% Similarity=-0.019 Sum_probs=37.1
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCC
Q 041816 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND-----WNEANCLLIEMMDQGV 319 (396)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~ 319 (396)
.+-.|.+.|+-.+-+|.+.|..|....-..++.+.-..|. ...|...++.....|.
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 3457899999999999999887766665666666554443 3345555555555553
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.57 E-value=94 Score=22.45 Aligned_cols=46 Identities=7% Similarity=-0.037 Sum_probs=20.3
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHH
Q 041816 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVA 179 (396)
Q Consensus 133 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 179 (396)
+.+.|+.++.. -..++..+...+..-.|.++++.+.+.+...+..|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aT 58 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVAT 58 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHH
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhh
Confidence 34445443333 22333344344444555555555555443333333
No 313
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=42.15 E-value=1.1e+02 Score=23.17 Aligned_cols=24 Identities=25% Similarity=0.112 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 360 TFSTLMDGFCLTGRVNHAKELFVS 383 (396)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~~~~~ 383 (396)
-|+.+...|...|+.+||.+.+..
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhh
Confidence 344555666778888888877654
No 314
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.75 E-value=1.1e+02 Score=22.84 Aligned_cols=50 Identities=6% Similarity=-0.024 Sum_probs=29.9
Q ss_pred CChhhHHHHHHHHHhcCCCC--CHHHHHHHHH-HH-----HhcCCHHHHHHHHHHHHh
Q 041816 156 GRVSHGFVVLGRILRSCFTP--DAVAFTSLIK-GL-----CAESRIMEAAALFTKLKA 205 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~~-----~~~g~~~~a~~~~~~~~~ 205 (396)
|++-+|.++++..-+....+ ....|..||. .. .+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777777777766554444 4455555555 21 235777777777766544
No 315
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=41.07 E-value=1.2e+02 Score=23.42 Aligned_cols=56 Identities=9% Similarity=0.095 Sum_probs=35.2
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCC
Q 041816 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND-----WNEANCLLIEMMDQGVQP 321 (396)
Q Consensus 265 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~p 321 (396)
+-.|.+.|+-.+-+|.+.| .|....-..++.+.-..|. ...|...++.....|.+-
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 4578888888888888888 6665555555556555553 334444555555556443
No 316
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.67 E-value=96 Score=22.06 Aligned_cols=17 Identities=12% Similarity=-0.042 Sum_probs=7.7
Q ss_pred ChhhHHHHHHHHHhcCC
Q 041816 157 RVSHGFVVLGRILRSCF 173 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~ 173 (396)
..-.|.++++.+.+.+.
T Consensus 33 ~~~sa~ei~~~l~~~~~ 49 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGE 49 (136)
T ss_dssp CSBCHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHhhCC
Confidence 34444455554444433
No 317
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=40.37 E-value=1e+02 Score=22.38 Aligned_cols=15 Identities=0% Similarity=-0.102 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHHhcC
Q 041816 158 VSHGFVVLGRILRSC 172 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~ 172 (396)
.-.|.++++.+.+.+
T Consensus 33 h~sa~ei~~~l~~~~ 47 (150)
T 2w57_A 33 HISAEELYKKLIDLG 47 (150)
T ss_dssp SEEHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC
Confidence 334444444444443
No 318
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=39.41 E-value=1e+02 Score=21.86 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC--HHHHHHHHHHHhhCCCC
Q 041816 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF--VDKAKELFLQMKDKNIN 285 (396)
Q Consensus 215 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 285 (396)
...++.-|...|+.++|.+.++++.... --...+...+..+.-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-------f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-------FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-------GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-------cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456677777777777777777764221 1122333444445544432 35566777777665443
No 319
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.18 E-value=1.2e+02 Score=22.66 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 041816 305 NEANCLLIEMMDQGVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360 (396)
Q Consensus 305 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 360 (396)
+.+..+|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|-...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 447778888888876544 44677777888888999999999998888877775543
No 320
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=38.39 E-value=44 Score=24.04 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=28.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-+
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4445555555666777777777666555666666666666666644
No 321
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=38.20 E-value=63 Score=22.89 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=28.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4444445555666777777777666555666666666666666643
No 322
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.77 E-value=64 Score=25.06 Aligned_cols=17 Identities=24% Similarity=0.133 Sum_probs=8.7
Q ss_pred HHHHHHhcCChhHHHHH
Q 041816 113 LFGCLAKTKHYDTVLSL 129 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~ 129 (396)
.+...+..|+.+-+.-+
T Consensus 45 ~L~~A~~~~~~~~v~~L 61 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYY 61 (240)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 34455666766544333
No 323
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.60 E-value=1.3e+02 Score=22.36 Aligned_cols=51 Identities=8% Similarity=0.043 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 041816 266 EGFVDKAKELFLQMKDKNINP--DVVTYNSLIH-G-----FCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~ 316 (396)
.|++-+|-++++..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777766554444 4445555655 2 1345666677766666653
No 324
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=36.17 E-value=1.5e+02 Score=23.10 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=42.1
Q ss_pred HHHHHHHHh---ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCC
Q 041816 256 YTTIIDGLC---KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND-----WNEANCLLIEMMDQGVQP 321 (396)
Q Consensus 256 ~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~p 321 (396)
+--+|+++. +-.+.+.|+-.+-+|.+.|..|....-..++.+.-..|. ...|...++.....|.+-
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 108 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPE 108 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 334445543 457899999999999998887766666666666655443 334555555555556443
No 325
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.21 E-value=1.2e+02 Score=21.81 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 041816 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (396)
Q Consensus 111 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 159 (396)
..++..+...+ .-.|.++++.+.+.+...+..|...-+..+.+.|-+.
T Consensus 22 ~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 22 QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 34555556666 7789999999988876778888878888888887644
No 326
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.73 E-value=1.3e+02 Score=21.72 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 159 (396)
-..++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-+.
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 34456666666777889999999988776667778777888888877654
No 327
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=34.70 E-value=71 Score=18.80 Aligned_cols=14 Identities=29% Similarity=0.339 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHhc
Q 041816 87 PNEAFCIFDYMLNM 100 (396)
Q Consensus 87 ~~~A~~~~~~~~~~ 100 (396)
.++|..+-+++...
T Consensus 22 H~EA~tIA~~L~~~ 35 (61)
T 3ph0_C 22 HQEAASIADWLAQE 35 (61)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhC
Confidence 45555555555443
No 328
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=34.38 E-value=2.5e+02 Score=24.96 Aligned_cols=38 Identities=13% Similarity=0.015 Sum_probs=22.2
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 041816 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302 (396)
Q Consensus 265 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 302 (396)
+.++.+.|+.++..|.+.|..|....-..++.+.-.-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 34677777777777777776655444444444443333
No 329
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.06 E-value=42 Score=20.05 Aligned_cols=29 Identities=28% Similarity=0.116 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 041816 88 NEAFCIFDYMLNMRPSPPPLTSFNLLFGCL 117 (396)
Q Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (396)
++|.+.|-+|++.... ++.-+|...+..+
T Consensus 3 eEae~aF~~lL~~~~V-~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQV-DSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTC-CSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCC-CCCCcHHHHHHHh
Confidence 4455555555544433 3334555555544
No 330
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=33.97 E-value=1.6e+02 Score=22.65 Aligned_cols=84 Identities=10% Similarity=0.085 Sum_probs=45.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------CHHHHHHHHH
Q 041816 298 FCYANDWNEANCLLIEMMDQGVQPDVVT--FNVIMDELCKNGKMDEASRLLELMILRGVNP---------NTSTFSTLMD 366 (396)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---------~~~~~~~li~ 366 (396)
.+..|+.+- ++.+.+.|..++... -...+...+..|+.+-+..+++.+.+.|..+ |..-.+. +.
T Consensus 128 A~~~~~~~~----v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~ 202 (232)
T 2rfa_A 128 AACVGSEEI----VRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FK 202 (232)
T ss_dssp HHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HH
T ss_pred HHHcCCHHH----HHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HH
Confidence 344555543 344445555544221 1233445566788888777778787776533 2222333 34
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 041816 367 GFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 367 ~~~~~g~~~~A~~~~~~m~~ 386 (396)
..++.|+.+-+.-+++.-..
T Consensus 203 ~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 203 LAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCcc
Confidence 44567777766666655443
No 331
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.05 E-value=81 Score=22.47 Aligned_cols=49 Identities=18% Similarity=0.141 Sum_probs=36.3
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 041816 111 NLLFGCLAKTK-HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (396)
Q Consensus 111 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 159 (396)
..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+.|-+.
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34566666666 67789999999988876677778777788888877654
No 332
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.89 E-value=60 Score=27.66 Aligned_cols=95 Identities=8% Similarity=0.028 Sum_probs=49.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhh---HHHHHH
Q 041816 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN-DWNEANCLLIEMMDQGVQPDVVT---FNVIMD 331 (396)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~ 331 (396)
...++.-|...|+.++|.+.++++...... .......+..++-+.. .-+.+..++..+.+.|+-+.... |..++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~ 92 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILE 92 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 456788889999999999999888532211 1122222222222211 23455666777776554333222 222222
Q ss_pred HHHhc-CCHHHHHHHHHHHHh
Q 041816 332 ELCKN-GKMDEASRLLELMIL 351 (396)
Q Consensus 332 ~~~~~-g~~~~A~~~~~~m~~ 351 (396)
.+-.. =|+..|...+.++..
T Consensus 93 ~l~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 93 LAEDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHHHTTTCTTHHHHHHHHHG
T ss_pred hChHhhcCccchHHHHHHHHH
Confidence 22221 245556666666654
No 333
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.43 E-value=2.9e+02 Score=25.17 Aligned_cols=66 Identities=9% Similarity=0.069 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCH--hhHH-HHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT--VTYT-TIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~-~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
...+|.+++.|...+.++.|..+..+..-... ..++. ..|. .+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~-----~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHT-----DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTT-----TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcc-----cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56789999999999999999999998752110 01111 2222 3456677789999999999887754
No 334
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.07 E-value=1.5e+02 Score=21.58 Aligned_cols=51 Identities=8% Similarity=0.013 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 159 (396)
--..++..+...+..-.|.++++.+.+.+...+..|....+..+.+.|-+.
T Consensus 28 qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 28 QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 344566677777778889999999988776667778777888888887654
No 335
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.06 E-value=1.5e+02 Score=21.85 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=28.9
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHhcCCh
Q 041816 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF--GCKPNVITYSTLINGLCRTGHT 228 (396)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~g~~ 228 (396)
+.|...+.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-.
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 345554332 223444444444555566666666555 4444444444445555665544
No 336
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.71 E-value=2e+02 Score=24.26 Aligned_cols=182 Identities=11% Similarity=-0.010 Sum_probs=83.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCH----------------
Q 041816 114 FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA---------------- 177 (396)
Q Consensus 114 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------- 177 (396)
+...+..|+.+-+.-+++ .|..++...-...+...+..|+.+-+..+++.....|..++.
T Consensus 57 L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (364)
T 3ljn_A 57 LHLACKFGCVDTAKYLAS----VGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSH 132 (364)
T ss_dssp HHHHHHHCCHHHHHHHHH----HCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTE
T ss_pred HHHHHHcCCHHHHHHHHH----CCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccc
Confidence 344555677654444443 343333322223344455678877777777665544443332
Q ss_pred ----HHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCccHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCC-Cccc
Q 041816 178 ----VAFTSLIKGLCAES--RIMEAAALFTKLKAFGCKPNVIT--YSTLINGLCRTGHTIVALNLFEEMANGNGK-FGVV 248 (396)
Q Consensus 178 ----~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~ 248 (396)
.-. +.+...+..| +.+-+..+++. |..++... -.+.+...+..|+.+-+..+++........ .
T Consensus 133 ~~~~~g~-t~L~~A~~~g~~~~~~v~~Ll~~----ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--- 204 (364)
T 3ljn_A 133 VKHCKGQ-TALHWCVGLGPEYLEMIKILVQL----GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL--- 204 (364)
T ss_dssp EEEESCC-CHHHHHHHSCGGGHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT---
T ss_pred cCCCCCC-CHHHHHHHcCCchHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc---
Confidence 112 2344445566 55555444443 43333211 112334445677776666555543220000 0
Q ss_pred ccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV---TYNSLIHGFCYANDWNEANCLLIE 313 (396)
Q Consensus 249 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~ 313 (396)
-..+..-++.| ...+..|+.+-+. .+.+.|..++.. -.+.|. ..+..|+.+-+..+++.
T Consensus 205 ~~~~~~g~t~L-~~A~~~g~~~~v~----~Ll~~gad~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 205 DYANKQGNSHL-HWAILINWEDVAM----RFVEMGIDVNMEDNEHTVPLY-LSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TCCCTTCCCTT-HHHHTTTCHHHHH----HHHTTTCCTTCCCTTSCCHHH-HHHHTCCHHHHHHHHHH
T ss_pred cccCCCCCcHH-HHHHHcCCHHHHH----HHHHcCCCCCCCCCCCCCHHH-HHHHhChHHHHHHHHHc
Confidence 01122222222 2344566665444 444455544322 233333 34566777766666654
No 337
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=31.27 E-value=47 Score=26.84 Aligned_cols=55 Identities=11% Similarity=-0.028 Sum_probs=32.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC-------CHHhHHHHHHHHH--hcCChhhHHHHHHHH
Q 041816 114 FGCLAKTKHYDTVLSLFKRLNSTGLFP-------DLYTYNILINCFC--KMGRVSHGFVVLGRI 168 (396)
Q Consensus 114 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-------~~~~~~~li~~~~--~~g~~~~a~~~~~~~ 168 (396)
+...++.|+.+.+..+++...+.+... |..-++.|..++. +.|+.+-+..+++.-
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 334466788888888888776655332 2333444554443 247777666666654
No 338
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.49 E-value=2.6e+02 Score=27.81 Aligned_cols=88 Identities=13% Similarity=0.052 Sum_probs=56.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------------------
Q 041816 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN------------------ 355 (396)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~------------------ 355 (396)
++..|...|.++-|.++..- ++.+...--.+..+|...|++++|...|+++.. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 55666667776655443321 222333223466677778888888888876532 111
Q ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 356 -----PNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 356 -----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.....|..++..+-+.|-++.+.++-+..++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 11236788999999999999999988887763
No 339
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=30.35 E-value=1.8e+02 Score=22.23 Aligned_cols=19 Identities=11% Similarity=-0.039 Sum_probs=11.4
Q ss_pred HHHHHhcCChhhHHHHHHH
Q 041816 149 INCFCKMGRVSHGFVVLGR 167 (396)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~ 167 (396)
+...+..|+.+....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445566777666666654
No 340
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=29.42 E-value=3e+02 Score=24.41 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 041816 191 SRIMEAAALFTKLKAFGCK 209 (396)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~ 209 (396)
++.+.|+.++.+|.+.|..
T Consensus 269 sd~daAl~~la~ml~~Ged 287 (447)
T 3pvs_A 269 SAPDAALYWYARIITAGGD 287 (447)
T ss_dssp TCHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 4555555555555555443
No 341
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=28.82 E-value=1.3e+02 Score=20.09 Aligned_cols=31 Identities=10% Similarity=0.050 Sum_probs=16.1
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 041816 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302 (396)
Q Consensus 272 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 302 (396)
|.++.+++...|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444445555555555555555555554444
No 342
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.52 E-value=70 Score=22.97 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=30.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 303 (396)
..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 34555555555666777777777776666666666666666666654
No 343
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=28.49 E-value=4.4e+02 Score=26.05 Aligned_cols=89 Identities=11% Similarity=0.064 Sum_probs=44.5
Q ss_pred HHHHHHHhcCC---hhhHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 041816 147 ILINCFCKMGR---VSHGFVVLGRILRSC----FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219 (396)
Q Consensus 147 ~li~~~~~~g~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 219 (396)
.++...|..|. .++|.+.|+.....+ ++||.. ..+...-.+.|..++-..++++..... +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 34555556554 334555565554421 334322 222233334565555555566555532 333345566
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 041816 220 NGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~ 240 (396)
.+++...+.....++++....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTC
T ss_pred HHhCCCCCHHHHHHHHHHHhC
Confidence 666666666666666655543
No 344
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=28.24 E-value=1.2e+02 Score=23.39 Aligned_cols=20 Identities=15% Similarity=-0.012 Sum_probs=13.4
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 041816 114 FGCLAKTKHYDTVLSLFKRL 133 (396)
Q Consensus 114 ~~~~~~~~~~~~a~~~~~~~ 133 (396)
+...+..|+.+....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 44556678888777777653
No 345
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=28.20 E-value=1.5e+02 Score=27.36 Aligned_cols=90 Identities=6% Similarity=-0.030 Sum_probs=46.6
Q ss_pred CHhhHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKT--KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (396)
....|..-+..+... .+.........++..+=.--+..-..-++..|.+.|-.+.|.+++..+-..-.. +...+ ..
T Consensus 478 ~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eA 555 (570)
T 3f3f_C 478 DKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ES 555 (570)
T ss_dssp CTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------
T ss_pred CCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HH
Confidence 445677777777753 455567777777765432234556778889999999999999999988765443 44455 66
Q ss_pred HHHHHhcCCHHHHH
Q 041816 184 IKGLCAESRIMEAA 197 (396)
Q Consensus 184 ~~~~~~~g~~~~a~ 197 (396)
+..|++.|+++.+.
T Consensus 556 L~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 556 IANFSRAGKYELVK 569 (570)
T ss_dssp --------------
T ss_pred HHHHHHcCChhhcc
Confidence 77788888887653
No 346
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.05 E-value=1e+02 Score=21.56 Aligned_cols=17 Identities=0% Similarity=-0.173 Sum_probs=8.1
Q ss_pred HhcCChhhHHHHHHHHH
Q 041816 153 CKMGRVSHGFVVLGRIL 169 (396)
Q Consensus 153 ~~~g~~~~a~~~~~~~~ 169 (396)
...++++.|..++..+.
T Consensus 72 l~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 72 LLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34445555555544444
No 347
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.99 E-value=1.4e+02 Score=20.01 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 126 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
|.++.+++...|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4555555666666666666666666665555
No 348
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=27.58 E-value=84 Score=18.69 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=15.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCc
Q 041816 370 LTGRVNHAKELFVSMESMGCKHTV 393 (396)
Q Consensus 370 ~~g~~~~A~~~~~~m~~~g~~p~~ 393 (396)
..|+.+.|+..+-+|...+..|+.
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCCC
Confidence 356677777777777666666653
No 349
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.57 E-value=71 Score=18.56 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 041816 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGR--VNHAKELFVSME 385 (396)
Q Consensus 344 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~ 385 (396)
+.++.+.+.|+++. ....++.+.|. ++.|++++.+|-
T Consensus 11 qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 11 QMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHhc
Confidence 33455555555442 12234444454 777777777763
No 350
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.39 E-value=2e+02 Score=21.75 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=7.3
Q ss_pred CHHhHHHHHHHHHhcCC
Q 041816 141 DLYTYNILINCFCKMGR 157 (396)
Q Consensus 141 ~~~~~~~li~~~~~~g~ 157 (396)
+...-...+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 44444444444444443
No 351
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.36 E-value=1.6e+02 Score=20.75 Aligned_cols=30 Identities=3% Similarity=-0.097 Sum_probs=13.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCCHH
Q 041816 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAV 178 (396)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 178 (396)
+..+...+..-.|.++++.+.+.+...+..
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~ 46 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLT 46 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHh
Confidence 333333444445555555554444333333
No 352
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.32 E-value=77 Score=24.67 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=12.3
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 041816 367 GFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 367 ~~~~~g~~~~A~~~~~~m~~ 386 (396)
.....|+.+.+.++.+.+.+
T Consensus 216 ~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 216 CASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34456666667776666654
No 353
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=27.08 E-value=4.7e+02 Score=25.87 Aligned_cols=158 Identities=13% Similarity=0.019 Sum_probs=88.4
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhcC----CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCH
Q 041816 181 TSLIKGLCAESR---IMEAAALFTKLKAFG----CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253 (396)
Q Consensus 181 ~~l~~~~~~~g~---~~~a~~~~~~~~~~g----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (396)
..++...|..|. .++|.+.|+.....+ ++||.. ..+...-.+.|..++-..+++...... +.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---------~~ 758 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---------LV 758 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---------SH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---------CH
Confidence 345666777776 457788888776542 455532 223333445677777667777776643 44
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHH---CCCCCCHhhHHH
Q 041816 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKN-INPDVVTYNSLIHGFCYAN-DWNEANCLLIEMMD---QGVQPDVVTFNV 328 (396)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~---~~~~p~~~~~~~ 328 (396)
.--..++.+++...+.+...++++.....+ ++ ... ...++.+..... ..+.|.+.+.+=.+ .........+..
T Consensus 759 ~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir-~qd-~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~ 836 (909)
T 4fke_A 759 NEADKLRSALACSNEVWLLNRYLGYTLNPDLIR-KQD-ATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSN 836 (909)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSC-GGG-HHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCc-hhh-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHH
Confidence 556778888888889988888888876543 32 222 233344443322 22334444332111 112234456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 041816 329 IMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 329 l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
++......-.-++-.+-++...+
T Consensus 837 ~i~~~~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 837 LIQGVTRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Confidence 77777665444444444455443
No 354
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=26.92 E-value=2.3e+02 Score=22.22 Aligned_cols=56 Identities=9% Similarity=-0.086 Sum_probs=33.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHhc---CChhhHHHHHHHHHh
Q 041816 114 FGCLAKTKHYDTVLSLFKRLNSTGLFPDL-------YTYNILINCFCKM---GRVSHGFVVLGRILR 170 (396)
Q Consensus 114 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~---g~~~~a~~~~~~~~~ 170 (396)
+...+..|+.+.+..+++.+.+.|..++. .-.+.|. ..+.. |+.+-+..+++.-..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~-~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM-KAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHH-HHHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHH-HHHHccccchHHHHHHHHhcCCc
Confidence 44456678888777777777766654443 2333343 33444 777777777665443
No 355
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.51 E-value=2.2e+02 Score=21.96 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=12.1
Q ss_pred cCChhhHHHHHHHHHhcCCCC
Q 041816 155 MGRVSHGFVVLGRILRSCFTP 175 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~ 175 (396)
-.+.+.|+-++.+|++.|-.|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 345666666666666665444
No 356
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.01 E-value=92 Score=22.69 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=37.2
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 111 NLLFGCLAKTK-HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 111 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
..++..+...+ ..-.|.++++.+.+.+...+..|....+..+.+.|-+.+
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 34555665555 677899999999888766778887788888888876543
No 357
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=25.77 E-value=4.3e+02 Score=27.49 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383 (396)
Q Consensus 304 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 383 (396)
.+...+.|.++.+---.-|.......+.--..+|++..|++++.++.+. +|+...|..++..+...| |+.-..+.++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHHh
Confidence 3444555666655421223333333344444688999999999999886 578888888887776665 4444555555
Q ss_pred HHhCCCCC
Q 041816 384 MESMGCKH 391 (396)
Q Consensus 384 m~~~g~~p 391 (396)
+.-....+
T Consensus 1342 ~~~~~~p~ 1349 (1354)
T 3lxu_X 1342 MMITAFPS 1349 (1354)
T ss_dssp HHHHHSCS
T ss_pred hhhhhCcc
Confidence 54433333
No 358
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.73 E-value=1e+02 Score=21.48 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=20.7
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 276 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
|+.+.+..+.|+...--.-+..+...++++.|..+...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444443333322333334566677777777666654
No 359
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=25.68 E-value=2.5e+02 Score=25.89 Aligned_cols=75 Identities=13% Similarity=0.003 Sum_probs=39.0
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHH
Q 041816 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 232 (396)
.+.+.......+++.+=+--+..-..-++..|.+.|-.+.|.++++.+-..-+. +...+ ..+..|++.|+++.+.
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhcc
Confidence 344556677777776544446777788999999999999999999998765433 44455 5667889999887653
No 360
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=25.25 E-value=1.5e+02 Score=20.54 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 041816 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD-QGVQPDVVTFNVIMDELCKNGKMDEASRL 345 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 345 (396)
.++..|..-+++.... .+|......++..+.. -++.++++.+...+ .|+ ++.++...+....+.|-++.. +.
T Consensus 2 ~~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~--t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~ 74 (119)
T 1wty_A 2 ASLARAVERLKAALER--PKDEFIRDSAIQRFEF--TFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PF 74 (119)
T ss_dssp CCHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HH
T ss_pred hHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HH
Confidence 3567788888877654 3466666666665533 25566666666553 465 466777778777887776555 55
Q ss_pred HHHHHh
Q 041816 346 LELMIL 351 (396)
Q Consensus 346 ~~~m~~ 351 (396)
|..|..
T Consensus 75 w~~m~~ 80 (119)
T 1wty_A 75 WLEMLE 80 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655654
No 361
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=25.03 E-value=1.2e+02 Score=18.46 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=10.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcC
Q 041816 148 LINCFCKMGRVSHGFVVLGRILRSC 172 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~ 172 (396)
++..+++..-+++++..+++.++.|
T Consensus 8 ll~l~Aed~AieDaiy~L~~aL~~g 32 (65)
T 2f6m_A 8 LYNLVAQDYALTDTIEALSRMLHRG 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333333444444444444443
No 362
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.01 E-value=2.4e+02 Score=21.83 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=12.1
Q ss_pred cCChhhHHHHHHHHHhcCCCC
Q 041816 155 MGRVSHGFVVLGRILRSCFTP 175 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~ 175 (396)
-.+.+.|+-++.+|++.| .|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp 46 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DL 46 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CH
T ss_pred cCCHHHHHHHHHHHHHcC-CH
Confidence 355666666666666666 44
No 363
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=24.73 E-value=1.1e+02 Score=22.86 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=11.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 041816 217 TLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
.++.-|...++.++|...++++
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL 36 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDL 36 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 364
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.49 E-value=2.3e+02 Score=21.14 Aligned_cols=134 Identities=9% Similarity=-0.016 Sum_probs=59.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHh-ccCCHHHHHHHHHHHhhCCCCCChhhH--H-H
Q 041816 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC-KEGFVDKAKELFLQMKDKNINPDVVTY--N-S 293 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~--~-~ 293 (396)
.+...+..|+.+.-.++.+.+.+.|.... ..|..-++.|..++. ...+.....++.+.+.+.|..++.... . +
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn---~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tt 117 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK---SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIV 117 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS---CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBC
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC---CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCch
Confidence 33444455555555556666665552110 111222223322222 223444456667777777766554321 1 2
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHH-CCCCCCHhhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041816 294 LIHGFCYANDW-NEANCLLIEMMD-QGVQPDVVTF--NVIMDELCKNGKMDEASRLLELMILRGV 354 (396)
Q Consensus 294 li~~~~~~~~~-~~a~~~~~~~~~-~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 354 (396)
.+...+..+.. ..-..+++.+.+ .|..++.... ..-+....+.|..+-..-+.+.+.+.++
T Consensus 118 pLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 118 VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182 (186)
T ss_dssp TTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 22222233322 334556666777 6766553321 1223333455655444444444443333
No 365
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=23.27 E-value=99 Score=21.98 Aligned_cols=11 Identities=18% Similarity=0.338 Sum_probs=4.3
Q ss_pred cCCHHHHHHHH
Q 041816 190 ESRIMEAAALF 200 (396)
Q Consensus 190 ~g~~~~a~~~~ 200 (396)
.|+.+.+..++
T Consensus 12 ~g~~~~v~~ll 22 (156)
T 1bd8_A 12 RGDVQEVRRLL 22 (156)
T ss_dssp HTCHHHHHHHH
T ss_pred hCCHHHHHHHH
Confidence 33444333333
No 366
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.81 E-value=1.5e+02 Score=18.56 Aligned_cols=14 Identities=7% Similarity=-0.002 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHhcC
Q 041816 159 SHGFVVLGRILRSC 172 (396)
Q Consensus 159 ~~a~~~~~~~~~~~ 172 (396)
-.+.++++.+.+.+
T Consensus 34 ~s~~el~~~l~~~~ 47 (83)
T 2fu4_A 34 VSAEDLYKRLIDMG 47 (83)
T ss_dssp BCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhC
Confidence 34444444444433
No 367
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.44 E-value=1.7e+02 Score=19.36 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 041816 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 307 (396)
...+.|.++++.+..+| ...|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 35666666666666653 33566666666555554444
No 368
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=22.22 E-value=64 Score=22.63 Aligned_cols=47 Identities=9% Similarity=-0.072 Sum_probs=22.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHH
Q 041816 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233 (396)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 233 (396)
|...+..++.+-|+++++-..+.| +...|.+++..|...=+++.+++
T Consensus 39 ietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 39 MQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp HHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 333444455555555555555543 44445555555555444444433
No 369
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=22.16 E-value=4.9e+02 Score=24.35 Aligned_cols=177 Identities=10% Similarity=-0.095 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHH----HHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccC
Q 041816 192 RIMEAAALFTKLKAFGCKPNVITYS----TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267 (396)
Q Consensus 192 ~~~~a~~~~~~~~~~g~~~~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 267 (396)
+.+.|...+....+.+. .+..... .+...+...+...++...+....... .+.....-.+....+.|
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--------QSTSLIERRVRMALGTG 299 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--------CCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--------CChHHHHHHHHHHHHCC
Confidence 67888888877765432 2332222 22223333443556666666654432 33333444445556779
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------------CCCCC----------Hh-
Q 041816 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ------------GVQPD----------VV- 324 (396)
Q Consensus 268 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------~~~p~----------~~- 324 (396)
+++.|...|+.|...... .......+.+++...|+.++|..+|..+... |.++. ..
T Consensus 300 d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~ 378 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSA 378 (618)
T ss_dssp CHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCH
T ss_pred CHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhh
Confidence 999999999998764222 3444566677788899999999998887642 21110 00
Q ss_pred ----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041816 325 ----TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381 (396)
Q Consensus 325 ----~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 381 (396)
.-...+..+...|....|...+..+.+. . +......+.......|..+.++...
T Consensus 379 ~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 379 LTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 0112344566788888888888877754 2 3333334444455666666655433
No 370
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.97 E-value=4.4e+02 Score=23.70 Aligned_cols=112 Identities=12% Similarity=0.040 Sum_probs=62.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199 (396)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 199 (396)
..+.+-|.++- .+.|++--...|..-.+.+...|++++|..+-....+ |+-.+..+.+.+-..=...|+..-.+.+
T Consensus 342 l~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 35666665553 3455554555677777777888888888776655433 3444666665555444444555556666
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 041816 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236 (396)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 236 (396)
|..+.+.| ..+..---.+++.-...|+.+....++.
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 66666655 3343333334444444555544444443
No 371
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.82 E-value=2.9e+02 Score=21.58 Aligned_cols=20 Identities=10% Similarity=0.127 Sum_probs=11.5
Q ss_pred CChhhHHHHHHHHHhcCCCC
Q 041816 156 GRVSHGFVVLGRILRSCFTP 175 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~ 175 (396)
.+.+.|+-++.+|++.|-.|
T Consensus 49 SDpDAALywLaRMl~~GEDp 68 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDP 68 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 45555666666666655444
No 372
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.57 E-value=1.3e+02 Score=24.11 Aligned_cols=55 Identities=16% Similarity=-0.016 Sum_probs=33.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCC-------CHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 041816 149 INCFCKMGRVSHGFVVLGRILRSCFTP-------DAVAFTSLIKGLC--AESRIMEAAALFTKL 203 (396)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~g~~~~a~~~~~~~ 203 (396)
+...++.|+.+....+++...+.+... +..-++.|..++. +.|+.+-+..+++.-
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 334557799988888888776655332 2233344444443 357777777777664
No 373
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.52 E-value=2.1e+02 Score=25.64 Aligned_cols=63 Identities=10% Similarity=0.057 Sum_probs=46.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChh--------hH-HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV--------TY-NSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--------~~-~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
..+.+...|.+.++...+..+++.+...+..|+.. +| ..+...+...+++.+|.+.+.++.+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 45778899999999999999999998766533322 33 23445566788898888888776653
Done!