Query 041817
Match_columns 104
No_of_seqs 190 out of 1096
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 10:56:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1577 Aldo/keto reductase fa 100.0 6.7E-31 1.5E-35 183.5 8.8 100 1-104 1-100 (300)
2 COG0656 ARA1 Aldo/keto reducta 100.0 5.6E-29 1.2E-33 173.2 7.5 95 4-104 2-96 (280)
3 COG0667 Tas Predicted oxidored 99.9 3.9E-23 8.4E-28 146.9 9.3 94 5-104 1-113 (316)
4 PRK10625 tas putative aldo-ket 99.9 1.3E-22 2.9E-27 145.3 9.6 94 5-104 1-119 (346)
5 PLN02587 L-galactose dehydroge 99.9 2E-22 4.4E-27 142.7 9.4 92 8-104 2-106 (314)
6 PRK11172 dkgB 2,5-diketo-D-glu 99.9 2.4E-22 5.3E-27 139.7 8.6 83 16-104 2-84 (267)
7 TIGR01293 Kv_beta voltage-depe 99.9 8.7E-22 1.9E-26 139.7 9.7 92 8-104 2-107 (317)
8 PRK11565 dkgA 2,5-diketo-D-glu 99.9 5.9E-22 1.3E-26 138.4 8.3 89 7-104 6-94 (275)
9 PRK10376 putative oxidoreducta 99.9 1E-21 2.2E-26 137.9 8.6 94 1-104 1-117 (290)
10 PRK09912 L-glyceraldehyde 3-ph 99.9 3.4E-21 7.3E-26 138.2 9.8 97 4-104 12-125 (346)
11 cd06660 Aldo_ket_red Aldo-keto 99.9 2.6E-21 5.6E-26 134.7 8.8 91 8-104 2-104 (285)
12 KOG1575 Voltage-gated shaker-l 99.8 3E-20 6.6E-25 132.0 9.2 96 4-104 11-122 (336)
13 COG1453 Predicted oxidoreducta 99.8 4.4E-19 9.5E-24 126.5 8.5 93 5-104 1-104 (391)
14 PRK14863 bifunctional regulato 99.8 5.2E-19 1.1E-23 124.6 5.7 81 15-104 3-97 (292)
15 PF00248 Aldo_ket_red: Aldo/ke 99.8 1.2E-18 2.6E-23 121.2 5.3 81 19-104 1-93 (283)
16 KOG1576 Predicted oxidoreducta 99.7 5.4E-18 1.2E-22 117.1 5.7 94 4-104 21-131 (342)
17 COG4989 Predicted oxidoreducta 99.6 1.9E-16 4.1E-21 108.6 4.4 95 5-104 1-114 (298)
18 KOG0259 Tyrosine aminotransfer 78.8 6.5 0.00014 29.5 5.1 54 23-85 75-135 (447)
19 PF11181 YflT: Heat induced st 68.0 12 0.00026 22.3 3.7 30 54-85 6-35 (103)
20 PF01118 Semialdhyde_dh: Semia 66.1 12 0.00026 22.7 3.6 27 29-55 75-101 (121)
21 smart00148 PLCXc Phospholipase 65.2 31 0.00068 21.6 6.4 52 33-87 30-98 (135)
22 COG1748 LYS9 Saccharopine dehy 63.8 17 0.00037 27.2 4.5 28 29-56 77-104 (389)
23 PRK05406 LamB/YcsF family prot 55.2 58 0.0013 22.9 5.7 68 21-101 13-90 (246)
24 KOG2367 Alpha-isopropylmalate 54.3 75 0.0016 24.8 6.5 58 29-88 202-261 (560)
25 cd03412 CbiK_N Anaerobic cobal 54.0 36 0.00079 21.0 4.2 15 57-71 55-69 (127)
26 PRK12569 hypothetical protein; 51.9 68 0.0015 22.5 5.6 68 21-101 14-93 (245)
27 PF00388 PI-PLC-X: Phosphatidy 51.3 14 0.00031 23.2 2.1 17 34-50 29-45 (146)
28 KOG2371 Molybdopterin biosynth 50.3 40 0.00086 25.3 4.4 49 31-85 215-263 (411)
29 PF01527 HTH_Tnp_1: Transposas 49.4 3.9 8.4E-05 22.5 -0.7 39 30-68 9-48 (76)
30 KOG3206 Alpha-tubulin folding 48.9 8.7 0.00019 26.4 0.9 14 43-56 199-212 (234)
31 COG1210 GalU UDP-glucose pyrop 48.5 23 0.00049 25.5 2.9 34 15-48 7-53 (291)
32 PRK10799 metal-binding protein 48.0 37 0.0008 23.5 3.9 33 36-69 199-231 (247)
33 COG1058 CinA Predicted nucleot 47.6 81 0.0018 22.3 5.5 65 31-101 21-88 (255)
34 cd00885 cinA Competence-damage 46.1 82 0.0018 20.5 7.0 43 36-84 24-66 (170)
35 PF02679 ComA: (2R)-phospho-3- 44.9 18 0.00039 25.3 2.0 65 31-102 84-156 (244)
36 cd02901 Macro_Poa1p_like Macro 44.8 22 0.00047 22.0 2.2 27 15-42 112-138 (140)
37 PF07912 ERp29_N: ERp29, N-ter 42.4 37 0.00081 21.4 2.9 19 46-64 26-45 (126)
38 PRK09413 IS2 repressor TnpA; R 42.0 17 0.00037 22.2 1.4 40 29-68 14-54 (121)
39 TIGR03849 arch_ComA phosphosul 42.0 33 0.00073 23.9 2.9 37 31-67 71-109 (237)
40 COG0563 Adk Adenylate kinase a 40.7 50 0.0011 21.7 3.5 27 43-69 24-54 (178)
41 COG2185 Sbm Methylmalonyl-CoA 39.4 1E+02 0.0023 19.8 5.4 21 35-55 54-74 (143)
42 COG1540 Uncharacterized protei 39.3 40 0.00087 23.7 2.9 18 21-38 13-30 (252)
43 COG1618 Predicted nucleotide k 38.7 77 0.0017 21.2 4.0 27 77-103 101-127 (179)
44 COG3215 PilZ Tfp pilus assembl 38.6 94 0.002 19.0 4.2 50 28-85 17-68 (117)
45 cd07491 Peptidases_S8_7 Peptid 38.5 1.3E+02 0.0028 20.7 5.9 39 30-68 88-133 (247)
46 cd03331 Macro_Poa1p_like_SNF2 37.5 33 0.00072 22.1 2.2 26 15-41 124-149 (152)
47 COG1795 Formaldehyde-activatin 37.1 78 0.0017 20.8 3.8 33 53-86 79-115 (170)
48 KOG2733 Uncharacterized membra 36.1 87 0.0019 23.7 4.4 47 34-86 99-145 (423)
49 COG0327 Uncharacterized conser 35.8 70 0.0015 22.3 3.8 35 33-68 199-233 (250)
50 PF13613 HTH_Tnp_4: Helix-turn 35.7 67 0.0014 16.5 3.1 36 32-67 7-43 (53)
51 PF08671 SinI: Anti-repressor 35.6 53 0.0011 15.3 2.2 17 30-46 2-18 (30)
52 KOG3062 RNA polymerase II elon 35.5 1.6E+02 0.0035 20.9 6.1 35 49-85 45-82 (281)
53 COG0002 ArgC Acetylglutamate s 34.1 77 0.0017 23.5 3.8 27 29-55 79-105 (349)
54 TIGR03126 one_C_fae formaldehy 33.9 82 0.0018 20.7 3.6 32 56-88 81-115 (160)
55 cd03330 Macro_2 Macro domain, 33.9 40 0.00087 20.7 2.1 27 15-42 107-133 (133)
56 COG3623 SgaU Putative L-xylulo 33.4 1.3E+02 0.0027 21.4 4.6 71 12-86 66-156 (287)
57 TIGR01501 MthylAspMutase methy 33.0 1.3E+02 0.0028 19.0 6.7 20 43-62 28-47 (134)
58 KOG0013 Uncharacterized conser 32.8 29 0.00064 23.9 1.4 21 46-66 50-70 (231)
59 TIGR00177 molyb_syn molybdenum 32.2 1.3E+02 0.0028 18.8 6.7 39 40-84 36-74 (144)
60 PF02629 CoA_binding: CoA bind 31.8 69 0.0015 18.5 2.8 20 29-48 71-90 (96)
61 KOG4627 Kynurenine formamidase 31.8 52 0.0011 23.0 2.5 35 23-57 76-110 (270)
62 PF13653 GDPD_2: Glycerophosph 31.1 64 0.0014 14.9 2.1 17 34-50 10-26 (30)
63 cd02900 Macro_Appr_pase Macro 31.0 55 0.0012 21.9 2.5 27 15-42 157-183 (186)
64 PF02679 ComA: (2R)-phospho-3- 30.8 1.9E+02 0.0042 20.3 6.1 30 19-48 42-71 (244)
65 PF11821 DUF3341: Protein of u 30.5 84 0.0018 20.8 3.3 27 28-54 10-36 (173)
66 PF13480 Acetyltransf_6: Acety 30.5 53 0.0011 19.5 2.3 20 33-52 116-135 (142)
67 PF13518 HTH_28: Helix-turn-he 30.2 34 0.00075 17.0 1.2 36 35-71 4-40 (52)
68 KOG0173 20S proteasome, regula 29.5 78 0.0017 22.5 3.1 17 29-45 184-200 (271)
69 COG0635 HemN Coproporphyrinoge 28.1 2.6E+02 0.0057 21.0 6.1 54 19-72 150-218 (416)
70 KOG2499 Beta-N-acetylhexosamin 27.9 91 0.002 24.4 3.4 39 15-53 230-275 (542)
71 PF08714 Fae: Formaldehyde-act 27.9 93 0.002 20.4 3.1 31 56-87 79-112 (159)
72 PRK05671 aspartate-semialdehyd 27.8 84 0.0018 22.9 3.2 27 29-55 75-101 (336)
73 COG0825 AccA Acetyl-CoA carbox 27.8 1.1E+02 0.0024 22.3 3.7 37 31-67 137-180 (317)
74 PRK07114 keto-hydroxyglutarate 27.6 2.1E+02 0.0045 19.7 5.6 35 28-62 24-59 (222)
75 PF01702 TGT: Queuine tRNA-rib 26.9 70 0.0015 21.8 2.6 18 36-53 126-143 (238)
76 KOG4245 Predicted metal-depend 26.4 1.1E+02 0.0025 21.2 3.4 35 20-54 68-103 (297)
77 KOG3267 Uncharacterized conser 26.4 23 0.00049 21.9 0.1 16 10-26 96-115 (138)
78 COG3607 Predicted lactoylgluta 26.4 1.2E+02 0.0025 19.3 3.2 27 29-55 81-107 (133)
79 TIGR01921 DAP-DH diaminopimela 25.6 2.7E+02 0.0059 20.4 7.0 50 34-88 74-123 (324)
80 PF11372 DUF3173: Domain of un 24.8 64 0.0014 17.5 1.6 18 34-51 24-41 (59)
81 PRK01215 competence damage-ind 24.7 2.6E+02 0.0055 19.7 7.2 43 36-84 28-70 (264)
82 PF08013 Tagatose_6_P_K: Tagat 24.5 82 0.0018 24.0 2.7 24 32-55 108-133 (424)
83 PRK12330 oxaloacetate decarbox 24.0 79 0.0017 24.6 2.6 24 31-54 212-235 (499)
84 COG0432 Uncharacterized conser 23.8 15 0.00032 23.5 -1.1 16 10-26 96-115 (137)
85 cd00137 PI-PLCc Catalytic doma 23.7 72 0.0016 22.5 2.2 53 33-88 36-104 (274)
86 PRK09461 ansA cytoplasmic aspa 23.7 1.3E+02 0.0029 21.9 3.6 34 21-54 241-274 (335)
87 COG1856 Uncharacterized homolo 23.7 1.1E+02 0.0023 21.7 2.9 14 29-42 203-216 (275)
88 PF04967 HTH_10: HTH DNA bindi 23.6 97 0.0021 16.3 2.2 14 32-45 4-17 (53)
89 PF05378 Hydant_A_N: Hydantoin 23.6 2.1E+02 0.0046 18.7 4.3 29 56-88 132-160 (176)
90 TIGR00640 acid_CoA_mut_C methy 23.5 1.9E+02 0.0042 17.9 5.6 21 35-55 44-64 (132)
91 PF03435 Saccharop_dh: Sacchar 23.3 72 0.0016 23.2 2.2 21 32-52 79-99 (386)
92 PLN00020 ribulose bisphosphate 23.3 2.7E+02 0.0058 21.3 5.1 48 18-67 147-203 (413)
93 PRK01008 queuine tRNA-ribosylt 23.1 1.3E+02 0.0027 22.6 3.4 32 16-54 255-286 (372)
94 cd08586 PI-PLCc_BcPLC_like Cat 22.7 2.9E+02 0.0062 19.6 7.0 66 35-103 37-119 (279)
95 COG2963 Transposase and inacti 22.7 80 0.0017 18.8 2.0 41 29-69 9-51 (116)
96 cd08555 PI-PLCc_GDPD_SF Cataly 22.6 1E+02 0.0022 19.9 2.6 21 30-50 12-32 (179)
97 cd00411 Asparaginase Asparagin 22.6 1.3E+02 0.0029 21.7 3.4 24 32-55 250-273 (323)
98 cd08557 PI-PLCc_bacteria_like 22.5 62 0.0013 22.1 1.7 17 35-51 41-57 (271)
99 TIGR03234 OH-pyruv-isom hydrox 22.4 2E+02 0.0044 19.4 4.2 36 32-67 15-51 (254)
100 PLN02383 aspartate semialdehyd 22.1 3.2E+02 0.007 20.0 7.8 27 29-55 78-104 (344)
101 COG1832 Predicted CoA-binding 22.0 97 0.0021 19.9 2.3 49 15-66 17-65 (140)
102 PRK12331 oxaloacetate decarbox 22.0 93 0.002 23.8 2.6 22 32-53 210-231 (448)
103 PF04481 DUF561: Protein of un 21.9 1.6E+02 0.0034 20.7 3.4 32 21-53 18-49 (242)
104 cd02905 Macro_GDAP2_like Macro 21.8 1.1E+02 0.0024 19.3 2.6 27 15-42 111-137 (140)
105 TIGR00486 YbgI_SA1388 dinuclea 21.8 1.2E+02 0.0027 20.9 3.1 31 37-68 202-232 (249)
106 TIGR02631 xylA_Arthro xylose i 21.4 2.8E+02 0.006 20.7 4.9 34 18-51 7-52 (382)
107 PRK13384 delta-aminolevulinic 20.7 3.5E+02 0.0077 19.9 5.4 52 29-85 59-121 (322)
108 COG1751 Uncharacterized conser 20.6 2.7E+02 0.0058 18.5 4.3 26 30-55 13-38 (186)
109 cd00886 MogA_MoaB MogA_MoaB fa 20.6 2.4E+02 0.0051 17.8 6.2 56 39-98 28-86 (152)
110 cd02903 Macro_BAL_like Macro d 20.6 95 0.0021 19.3 2.1 26 15-41 109-134 (137)
111 PF06908 DUF1273: Protein of u 20.3 2.7E+02 0.0058 18.4 4.5 36 32-67 30-65 (177)
112 PHA00965 tail protein 20.3 1.1E+02 0.0025 24.1 2.8 30 23-52 543-573 (588)
113 PRK14041 oxaloacetate decarbox 20.2 1E+02 0.0023 23.7 2.6 22 32-53 209-230 (467)
114 KOG0556 Aspartyl-tRNA syntheta 20.0 3.2E+02 0.0069 21.2 4.9 44 36-86 383-427 (533)
115 PF01784 NIF3: NIF3 (NGG1p int 20.0 61 0.0013 22.2 1.2 33 34-67 202-234 (241)
No 1
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=99.97 E-value=6.7e-31 Score=183.46 Aligned_cols=100 Identities=42% Similarity=0.600 Sum_probs=92.6
Q ss_pred CCCCCCceecCCCCcccceeeecCcccCCHHHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEE
Q 041817 1 MGTAIPEEPLGSTEKSIPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAASYPSEQPLGEALAEALRLGLVKSRDELF 80 (104)
Q Consensus 1 m~~~~~~~~l~~~~~~ip~ig~G~~~~~~~~~~~~~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~~~~~~~~r~~~~ 80 (104)
|+... .++|++| .+||.||||||+ .++.++.++++.|++.||||||||..|+||+.+|++|++.+.++.+ +|+|+|
T Consensus 1 M~~~~-~~~Ln~G-~~mP~iGlGTw~-~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v-~RediF 76 (300)
T KOG1577|consen 1 MSSKT-TVKLNNG-FKMPIIGLGTWQ-SPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGV-KREDIF 76 (300)
T ss_pred CCccc-eEeccCC-CccceeeeEecc-cChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCc-chhhhe
Confidence 66444 6899999 999999999999 6789999999999999999999999999999999999999876666 999999
Q ss_pred EEeccCCCCCChhhHHHHHHhhhC
Q 041817 81 ITSKLWLTDSYCGRVIPGLQKTLK 104 (104)
Q Consensus 81 i~tK~~~~~~~~~~v~~~~~~sL~ 104 (104)
|+||+|+..+.++.++.+|++||+
T Consensus 77 iTSKlw~~~~~~~~v~~al~~sLk 100 (300)
T KOG1577|consen 77 ITSKLWPTDHAPELVEKALEKSLK 100 (300)
T ss_pred eeeccCccccChhhHHHHHHHHHH
Confidence 999999999999999999999985
No 2
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=99.96 E-value=5.6e-29 Score=173.19 Aligned_cols=95 Identities=37% Similarity=0.576 Sum_probs=87.4
Q ss_pred CCCceecCCCCcccceeeecCcccCCHHHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEe
Q 041817 4 AIPEEPLGSTEKSIPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAASYPSEQPLGEALAEALRLGLVKSRDELFITS 83 (104)
Q Consensus 4 ~~~~~~l~~~~~~ip~ig~G~~~~~~~~~~~~~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~~~~~~~~r~~~~i~t 83 (104)
++.+.+|++| .+||.||||||++.+.+.+.+++..|++.|||+||||..||||+.+|++|++. +. +|+++||+|
T Consensus 2 ~~~~~~l~~g-~~iP~iGlGt~~~~~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~v--~ReelFitt 75 (280)
T COG0656 2 MKTKVTLNNG-VEIPAIGLGTWQIGDDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---GV--PREELFITT 75 (280)
T ss_pred CCceeecCCC-CcccCcceEeeecCCchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---CC--CHHHeEEEe
Confidence 4556788998 89999999999976555599999999999999999999999999999999996 77 899999999
Q ss_pred ccCCCCCChhhHHHHHHhhhC
Q 041817 84 KLWLTDSYCGRVIPGLQKTLK 104 (104)
Q Consensus 84 K~~~~~~~~~~v~~~~~~sL~ 104 (104)
|+|+.+++++.+.+++++||+
T Consensus 76 Kvw~~~~~~~~~~~a~e~Sl~ 96 (280)
T COG0656 76 KVWPSDLGYDETLKALEASLK 96 (280)
T ss_pred ecCCccCCcchHHHHHHHHHH
Confidence 999999999999999999984
No 3
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=99.89 E-value=3.9e-23 Score=146.87 Aligned_cols=94 Identities=30% Similarity=0.389 Sum_probs=80.6
Q ss_pred CCceecCCCCcccceeeecCcccCC------HHHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCCC
Q 041817 5 IPEEPLGSTEKSIPLVGFGTVEYPL------NEAFKERVLHAIKLGYRHFDTAASYP---SEQPLGEALAEALRLGLVKS 75 (104)
Q Consensus 5 ~~~~~l~~~~~~ip~ig~G~~~~~~------~~~~~~~~~~a~~~G~~~~DtA~~Yg---~E~~~g~~l~~~~~~~~~~~ 75 (104)
|++++|++.|+++|+||||||.++. .+++.+++++|+++|+|+||||++|| ||+.+|++|+.. + .
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~---~ 74 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G---R 74 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C---C
Confidence 5678898867999999999999853 23566799999999999999999999 999999999975 2 3
Q ss_pred CCcEEEEeccCC----------CCCChhhHHHHHHhhhC
Q 041817 76 RDELFITSKLWL----------TDSYCGRVIPGLQKTLK 104 (104)
Q Consensus 76 r~~~~i~tK~~~----------~~~~~~~v~~~~~~sL~ 104 (104)
|++++|+||+.. .+.+++.++++++.||+
T Consensus 75 Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~ 113 (316)
T COG0667 75 RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLK 113 (316)
T ss_pred CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHH
Confidence 899999999843 23589999999999985
No 4
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=99.88 E-value=1.3e-22 Score=145.34 Aligned_cols=94 Identities=24% Similarity=0.355 Sum_probs=81.7
Q ss_pred CCceecCCCCcccceeeecCcccC---CHHHHHHHHHHHHHcCCCeEeCCCCCC----------ChHHHHHHHHHHHhcC
Q 041817 5 IPEEPLGSTEKSIPLVGFGTVEYP---LNEAFKERVLHAIKLGYRHFDTAASYP----------SEQPLGEALAEALRLG 71 (104)
Q Consensus 5 ~~~~~l~~~~~~ip~ig~G~~~~~---~~~~~~~~~~~a~~~G~~~~DtA~~Yg----------~E~~~g~~l~~~~~~~ 71 (104)
|++++|++.|+.+|.||||||.++ +.+++.++++.|++.|+|+||||+.|| ||+.+|++|++. +
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~---~ 77 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR---G 77 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc---C
Confidence 567889887799999999999985 467899999999999999999999996 899999999863 3
Q ss_pred CCCCCCcEEEEeccCCC------------CCChhhHHHHHHhhhC
Q 041817 72 LVKSRDELFITSKLWLT------------DSYCGRVIPGLQKTLK 104 (104)
Q Consensus 72 ~~~~r~~~~i~tK~~~~------------~~~~~~v~~~~~~sL~ 104 (104)
.|+++||+||++.. +.+++.++++|++||+
T Consensus 78 ---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~ 119 (346)
T PRK10625 78 ---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLK 119 (346)
T ss_pred ---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHH
Confidence 58999999998531 3578999999999984
No 5
>PLN02587 L-galactose dehydrogenase
Probab=99.88 E-value=2e-22 Score=142.71 Aligned_cols=92 Identities=33% Similarity=0.459 Sum_probs=79.9
Q ss_pred eecCCCCcccceeeecCcccC------CHHHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCCCCCc
Q 041817 8 EPLGSTEKSIPLVGFGTVEYP------LNEAFKERVLHAIKLGYRHFDTAASYP---SEQPLGEALAEALRLGLVKSRDE 78 (104)
Q Consensus 8 ~~l~~~~~~ip~ig~G~~~~~------~~~~~~~~~~~a~~~G~~~~DtA~~Yg---~E~~~g~~l~~~~~~~~~~~r~~ 78 (104)
++|+++|+++|.||||||+++ +.+++.++++.|++.|+|+||||+.|| +|+.+|++|+.. +. .|++
T Consensus 2 r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~~--~R~~ 76 (314)
T PLN02587 2 RELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---GI--PREK 76 (314)
T ss_pred CcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---CC--Ccce
Confidence 567776699999999999863 567899999999999999999999997 699999999875 44 6999
Q ss_pred EEEEeccCCC----CCChhhHHHHHHhhhC
Q 041817 79 LFITSKLWLT----DSYCGRVIPGLQKTLK 104 (104)
Q Consensus 79 ~~i~tK~~~~----~~~~~~v~~~~~~sL~ 104 (104)
+||+||+++. +.+++.+++++++||+
T Consensus 77 v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~ 106 (314)
T PLN02587 77 YVVSTKCGRYGEGFDFSAERVTKSVDESLA 106 (314)
T ss_pred EEEEeccccCCCCCCCCHHHHHHHHHHHHH
Confidence 9999998742 4578999999999984
No 6
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=99.88 E-value=2.4e-22 Score=139.68 Aligned_cols=83 Identities=42% Similarity=0.783 Sum_probs=75.4
Q ss_pred ccceeeecCcccCCHHHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhH
Q 041817 16 SIPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAASYPSEQPLGEALAEALRLGLVKSRDELFITSKLWLTDSYCGRV 95 (104)
Q Consensus 16 ~ip~ig~G~~~~~~~~~~~~~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~~~~~~~~~~v 95 (104)
++|.+|||||++ +.+++.++++.|++.|||+||||+.||+|+.+|++|+.. +. .|+++||+||+++...+++.+
T Consensus 2 ~vs~lglGt~~~-~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~v~i~TK~~~~~~~~~~~ 75 (267)
T PRK11172 2 SIPAFGLGTFRL-KDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---GV--PRDELFITTKIWIDNLAKDKL 75 (267)
T ss_pred CCCCEeeEcccc-ChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---CC--ChhHeEEEEEeCCCCCCHHHH
Confidence 689999999996 467899999999999999999999999999999999875 55 799999999998777788999
Q ss_pred HHHHHhhhC
Q 041817 96 IPGLQKTLK 104 (104)
Q Consensus 96 ~~~~~~sL~ 104 (104)
++++++||+
T Consensus 76 ~~~~~~SL~ 84 (267)
T PRK11172 76 IPSLKESLQ 84 (267)
T ss_pred HHHHHHHHH
Confidence 999999984
No 7
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=99.87 E-value=8.7e-22 Score=139.70 Aligned_cols=92 Identities=28% Similarity=0.403 Sum_probs=78.5
Q ss_pred eecCCCCcccceeeecCccc----CCHHHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCCCCCcEE
Q 041817 8 EPLGSTEKSIPLVGFGTVEY----PLNEAFKERVLHAIKLGYRHFDTAASYP---SEQPLGEALAEALRLGLVKSRDELF 80 (104)
Q Consensus 8 ~~l~~~~~~ip~ig~G~~~~----~~~~~~~~~~~~a~~~G~~~~DtA~~Yg---~E~~~g~~l~~~~~~~~~~~r~~~~ 80 (104)
++|++.|+++|+||||||.+ .+.+++.++++.|+++|+|+||||+.|| ||+.+|++|+.. +. .|+++|
T Consensus 2 r~lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~~--~R~~~~ 76 (317)
T TIGR01293 2 RNLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---GW--RRSSYV 76 (317)
T ss_pred cccCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---CC--CcccEE
Confidence 56777669999999999973 2567899999999999999999999998 899999999864 44 699999
Q ss_pred EEeccCCC-------CCChhhHHHHHHhhhC
Q 041817 81 ITSKLWLT-------DSYCGRVIPGLQKTLK 104 (104)
Q Consensus 81 i~tK~~~~-------~~~~~~v~~~~~~sL~ 104 (104)
|+||+.+. +.+++.++++|++||+
T Consensus 77 iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~ 107 (317)
T TIGR01293 77 ITTKIFWGGKAETERGLSRKHIIEGLKASLE 107 (317)
T ss_pred EEeeeccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99997421 3468999999999985
No 8
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=99.87 E-value=5.9e-22 Score=138.36 Aligned_cols=89 Identities=38% Similarity=0.593 Sum_probs=78.7
Q ss_pred ceecCCCCcccceeeecCcccCCHHHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccC
Q 041817 7 EEPLGSTEKSIPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAASYPSEQPLGEALAEALRLGLVKSRDELFITSKLW 86 (104)
Q Consensus 7 ~~~l~~~~~~ip~ig~G~~~~~~~~~~~~~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~~ 86 (104)
++.|++| +.+|.||||||++ +.+++.++++.|++.|+|+||||+.||+|+.+|++|+.. +. .|+++||+||++
T Consensus 6 ~~~l~~g-~~v~~lglG~~~~-~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~~~i~tK~~ 78 (275)
T PRK11565 6 VIKLQDG-NVMPQLGLGVWQA-SNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---SV--AREELFITTKLW 78 (275)
T ss_pred eEEcCCC-CccCCcceECccC-CHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---CC--CHHHEEEEEEec
Confidence 4667777 9999999999995 578899999999999999999999999999999999975 54 699999999997
Q ss_pred CCCCChhhHHHHHHhhhC
Q 041817 87 LTDSYCGRVIPGLQKTLK 104 (104)
Q Consensus 87 ~~~~~~~~v~~~~~~sL~ 104 (104)
+. +++.+++++++||+
T Consensus 79 ~~--~~~~~~~~~~~sL~ 94 (275)
T PRK11565 79 ND--DHKRPREALEESLK 94 (275)
T ss_pred Cc--chHHHHHHHHHHHH
Confidence 54 46789999999984
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=99.86 E-value=1e-21 Score=137.94 Aligned_cols=94 Identities=27% Similarity=0.374 Sum_probs=78.1
Q ss_pred CCCCCC--ceecCCCCcccceeeecCcccC---------CHHHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHH
Q 041817 1 MGTAIP--EEPLGSTEKSIPLVGFGTVEYP---------LNEAFKERVLHAIKLGYRHFDTAASYP---SEQPLGEALAE 66 (104)
Q Consensus 1 m~~~~~--~~~l~~~~~~ip~ig~G~~~~~---------~~~~~~~~~~~a~~~G~~~~DtA~~Yg---~E~~~g~~l~~ 66 (104)
|++.|. ++.|+ + .++|.||||||+++ +.+++.++++.|++.|||+||||+.|| +|+.+|++++.
T Consensus 1 ~~~~~~~~~~~l~-g-~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~ 78 (290)
T PRK10376 1 MSTIMSSGTFTLG-G-RSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP 78 (290)
T ss_pred CcccccCCceecC-C-eeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc
Confidence 665544 45665 5 99999999999874 356789999999999999999999998 58899999863
Q ss_pred HHhcCCCCCCCcEEEEeccC---------CCCCChhhHHHHHHhhhC
Q 041817 67 ALRLGLVKSRDELFITSKLW---------LTDSYCGRVIPGLQKTLK 104 (104)
Q Consensus 67 ~~~~~~~~~r~~~~i~tK~~---------~~~~~~~~v~~~~~~sL~ 104 (104)
.|+++||+||+. +.+.+++.+++++++||+
T Consensus 79 --------~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~ 117 (290)
T PRK10376 79 --------YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLR 117 (290)
T ss_pred --------CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHH
Confidence 589999999973 234578999999999985
No 10
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=99.86 E-value=3.4e-21 Score=138.24 Aligned_cols=97 Identities=26% Similarity=0.382 Sum_probs=81.2
Q ss_pred CCCceecCCCCcccceeeecCcc-cC---CHHHHHHHHHHHHHcCCCeEeCCCCCC-----ChHHHHHHHHHHHhcCCCC
Q 041817 4 AIPEEPLGSTEKSIPLVGFGTVE-YP---LNEAFKERVLHAIKLGYRHFDTAASYP-----SEQPLGEALAEALRLGLVK 74 (104)
Q Consensus 4 ~~~~~~l~~~~~~ip~ig~G~~~-~~---~~~~~~~~~~~a~~~G~~~~DtA~~Yg-----~E~~~g~~l~~~~~~~~~~ 74 (104)
.|+++.|++.|+++|.||||||+ ++ +.+++.++++.|++.|+|+||||+.|| +|+.+|++|+... +.
T Consensus 12 ~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~--~~-- 87 (346)
T PRK09912 12 QMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF--AA-- 87 (346)
T ss_pred CcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc--cC--
Confidence 48889998877999999999997 43 456789999999999999999999998 6999999998631 12
Q ss_pred CCCcEEEEeccC----CC----CCChhhHHHHHHhhhC
Q 041817 75 SRDELFITSKLW----LT----DSYCGRVIPGLQKTLK 104 (104)
Q Consensus 75 ~r~~~~i~tK~~----~~----~~~~~~v~~~~~~sL~ 104 (104)
.|+++||+||++ +. +.+++.+++++++||+
T Consensus 88 ~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~ 125 (346)
T PRK09912 88 YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLK 125 (346)
T ss_pred CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 599999999963 22 2468899999999984
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=99.85 E-value=2.6e-21 Score=134.71 Aligned_cols=91 Identities=33% Similarity=0.435 Sum_probs=79.8
Q ss_pred eecCCCCcccceeeecCcccC----CHHHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCCCCCcEE
Q 041817 8 EPLGSTEKSIPLVGFGTVEYP----LNEAFKERVLHAIKLGYRHFDTAASYP---SEQPLGEALAEALRLGLVKSRDELF 80 (104)
Q Consensus 8 ~~l~~~~~~ip~ig~G~~~~~----~~~~~~~~~~~a~~~G~~~~DtA~~Yg---~E~~~g~~l~~~~~~~~~~~r~~~~ 80 (104)
++|+++|..+|.+|||+|.++ +.+++.++++.|++.|||+||||+.|| +|+.+|++|+.. + .|+++|
T Consensus 2 r~lg~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~---~R~~~~ 75 (285)
T cd06660 2 RTLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G---PREEVF 75 (285)
T ss_pred cccCCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C---CcCcEE
Confidence 567755599999999999974 458899999999999999999999999 899999999974 1 399999
Q ss_pred EEeccCCCC-----CChhhHHHHHHhhhC
Q 041817 81 ITSKLWLTD-----SYCGRVIPGLQKTLK 104 (104)
Q Consensus 81 i~tK~~~~~-----~~~~~v~~~~~~sL~ 104 (104)
|+||+++.. .+++.+++++++||+
T Consensus 76 i~tK~~~~~~~~~~~~~~~~~~~l~~sL~ 104 (285)
T cd06660 76 IATKVGPRPGDGRDLSPEHIRRAVEESLK 104 (285)
T ss_pred EEeeecCCCCCCCCCCHHHHHHHHHHHHH
Confidence 999998764 578999999999984
No 12
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=99.83 E-value=3e-20 Score=132.03 Aligned_cols=96 Identities=28% Similarity=0.437 Sum_probs=81.6
Q ss_pred CCCceecCCCCcccceeeecCccc------CCHHHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCC
Q 041817 4 AIPEEPLGSTEKSIPLVGFGTVEY------PLNEAFKERVLHAIKLGYRHFDTAASYP---SEQPLGEALAEALRLGLVK 74 (104)
Q Consensus 4 ~~~~~~l~~~~~~ip~ig~G~~~~------~~~~~~~~~~~~a~~~G~~~~DtA~~Yg---~E~~~g~~l~~~~~~~~~~ 74 (104)
.+++++|+++|++|+++|||||.+ .+.+++++++++|+++|+|+||||++|| ||+.+|++|+++ +.
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~---~~-- 85 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR---GW-- 85 (336)
T ss_pred cceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc---CC--
Confidence 367788999889999999999544 2688999999999999999999999999 899999999997 65
Q ss_pred CCCcEEEEeccCC-------CCCChhhHHHHHHhhhC
Q 041817 75 SRDELFITSKLWL-------TDSYCGRVIPGLQKTLK 104 (104)
Q Consensus 75 ~r~~~~i~tK~~~-------~~~~~~~v~~~~~~sL~ 104 (104)
.|++++|+||+.. ...++..+.+.++.||+
T Consensus 86 ~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~ 122 (336)
T KOG1575|consen 86 RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLR 122 (336)
T ss_pred cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHH
Confidence 7999999999843 33456677777777764
No 13
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.79 E-value=4.4e-19 Score=126.52 Aligned_cols=93 Identities=26% Similarity=0.305 Sum_probs=81.0
Q ss_pred CCceecCCCCcccceeeecCcccC-------CHHHHHHHHHHHHHcCCCeEeCCCCC--C-ChHHHHHHHHHHHhcCCCC
Q 041817 5 IPEEPLGSTEKSIPLVGFGTVEYP-------LNEAFKERVLHAIKLGYRHFDTAASY--P-SEQPLGEALAEALRLGLVK 74 (104)
Q Consensus 5 ~~~~~l~~~~~~ip~ig~G~~~~~-------~~~~~~~~~~~a~~~G~~~~DtA~~Y--g-~E~~~g~~l~~~~~~~~~~ 74 (104)
|.+++++.+|.++|.+|||+|+++ +.+.+.+.++.|++.|||+||||+.| | +|..+|++|+..
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~------- 73 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG------- 73 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc-------
Confidence 456788777799999999999982 56789999999999999999999999 6 999999999984
Q ss_pred CCCcEEEEeccCCC-CCChhhHHHHHHhhhC
Q 041817 75 SRDELFITSKLWLT-DSYCGRVIPGLQKTLK 104 (104)
Q Consensus 75 ~r~~~~i~tK~~~~-~~~~~~v~~~~~~sL~ 104 (104)
.|++++++||+... -.++++.++.++++|+
T Consensus 74 ~Rekv~LaTKlp~~~~~~~edm~r~fneqLe 104 (391)
T COG1453 74 YREKVKLATKLPSWPVKDREDMERIFNEQLE 104 (391)
T ss_pred ccceEEEEeecCCccccCHHHHHHHHHHHHH
Confidence 79999999999743 2357889999999884
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=99.77 E-value=5.2e-19 Score=124.56 Aligned_cols=81 Identities=12% Similarity=0.186 Sum_probs=69.4
Q ss_pred cccceeeecCcccC-------------CHHHHHHHHHHHHHcCCCeEeCCCCCC-ChHHHHHHHHHHHhcCCCCCCCcEE
Q 041817 15 KSIPLVGFGTVEYP-------------LNEAFKERVLHAIKLGYRHFDTAASYP-SEQPLGEALAEALRLGLVKSRDELF 80 (104)
Q Consensus 15 ~~ip~ig~G~~~~~-------------~~~~~~~~~~~a~~~G~~~~DtA~~Yg-~E~~~g~~l~~~~~~~~~~~r~~~~ 80 (104)
+++|.||||||+++ +.+++.++++.|++.|||+||||+.|| +|+.+|++|+.. .+.+++
T Consensus 3 ~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~-------~~~~~~ 75 (292)
T PRK14863 3 SPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP-------VPFRVT 75 (292)
T ss_pred CcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC-------CceEee
Confidence 78999999999874 357899999999999999999999999 899999999741 356789
Q ss_pred EEeccCCCCCChhhHHHHHHhhhC
Q 041817 81 ITSKLWLTDSYCGRVIPGLQKTLK 104 (104)
Q Consensus 81 i~tK~~~~~~~~~~v~~~~~~sL~ 104 (104)
|+||.. ..+++.+++++++||+
T Consensus 76 i~tk~~--~~~~~~i~~~~e~SL~ 97 (292)
T PRK14863 76 LSTVRA--DRGPDFVEAEARASLR 97 (292)
T ss_pred cccccc--cccHHHHHHHHHHHHH
Confidence 999853 3467899999999985
No 15
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=99.75 E-value=1.2e-18 Score=121.16 Aligned_cols=81 Identities=32% Similarity=0.466 Sum_probs=69.7
Q ss_pred eeeecCcccC----CHHHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCCCCCcEEEEecc-----C
Q 041817 19 LVGFGTVEYP----LNEAFKERVLHAIKLGYRHFDTAASYP---SEQPLGEALAEALRLGLVKSRDELFITSKL-----W 86 (104)
Q Consensus 19 ~ig~G~~~~~----~~~~~~~~~~~a~~~G~~~~DtA~~Yg---~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~-----~ 86 (104)
+||||||+++ +.+++.++++.|++.|+|+||||+.|+ +|+.+|++|+.. +. .|++++|+||+ +
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~---~~--~r~~~~i~tK~~~~~~~ 75 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS---RV--PRDDIFISTKVYGDGKP 75 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT---SS--TGGGSEEEEEEESSSST
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccc---cc--ccccccccccccccccc
Confidence 4899999873 578899999999999999999999993 999999999983 44 89999999999 5
Q ss_pred CCCCChhhHHHHHHhhhC
Q 041817 87 LTDSYCGRVIPGLQKTLK 104 (104)
Q Consensus 87 ~~~~~~~~v~~~~~~sL~ 104 (104)
....+++.+++++++||+
T Consensus 76 ~~~~~~~~i~~~~~~sL~ 93 (283)
T PF00248_consen 76 EPDYSPDSIRESLERSLE 93 (283)
T ss_dssp GGGSSHHHHHHHHHHHHH
T ss_pred cccccccccccccccccc
Confidence 567789999999999984
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.73 E-value=5.4e-18 Score=117.13 Aligned_cols=94 Identities=29% Similarity=0.377 Sum_probs=79.6
Q ss_pred CCCceecCCCCcccceeeecCccc----C--CHHHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCC
Q 041817 4 AIPEEPLGSTEKSIPLVGFGTVEY----P--LNEAFKERVLHAIKLGYRHFDTAASYP---SEQPLGEALAEALRLGLVK 74 (104)
Q Consensus 4 ~~~~~~l~~~~~~ip~ig~G~~~~----~--~~~~~~~~~~~a~~~G~~~~DtA~~Yg---~E~~~g~~l~~~~~~~~~~ 74 (104)
+|..+.|+++|+.||++|||...+ + +.++....+..|++.|||+|||++.|| +|+.+|.++++.
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~v------- 93 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDV------- 93 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhC-------
Confidence 466788888789999999997654 3 456666666779999999999999999 899999999875
Q ss_pred CCCcEEEEeccCC--------CCCChhhHHHHHHhhhC
Q 041817 75 SRDELFITSKLWL--------TDSYCGRVIPGLQKTLK 104 (104)
Q Consensus 75 ~r~~~~i~tK~~~--------~~~~~~~v~~~~~~sL~ 104 (104)
+|+..||+||+.. .+.+++.+++++++||+
T Consensus 94 PR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSle 131 (342)
T KOG1576|consen 94 PREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLE 131 (342)
T ss_pred ChhheeeeeeeeecccCccccccchHHHHHHHHHHHHH
Confidence 9999999999954 36788999999999984
No 17
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=99.64 E-value=1.9e-16 Score=108.56 Aligned_cols=95 Identities=23% Similarity=0.259 Sum_probs=82.3
Q ss_pred CCceecCCCCcccceeeecCcccC----CHHHHHHHHHHHHHcCCCeEeCCCCCC---ChHHHHHHHHHHHhcCCCCCCC
Q 041817 5 IPEEPLGSTEKSIPLVGFGTVEYP----LNEAFKERVLHAIKLGYRHFDTAASYP---SEQPLGEALAEALRLGLVKSRD 77 (104)
Q Consensus 5 ~~~~~l~~~~~~ip~ig~G~~~~~----~~~~~~~~~~~a~~~G~~~~DtA~~Yg---~E~~~g~~l~~~~~~~~~~~r~ 77 (104)
|+++.|++.|+++|++.+|+|++. .+.+....+..+++.|+++||-|++|| +|+.+|.+|+.. .. .|+
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~---p~--lRe 75 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA---PG--LRE 75 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC---hh--hhh
Confidence 567889876699999999999983 356888999999999999999999999 899999999975 33 699
Q ss_pred cEEEEeccCC------------CCCChhhHHHHHHhhhC
Q 041817 78 ELFITSKLWL------------TDSYCGRVIPGLQKTLK 104 (104)
Q Consensus 78 ~~~i~tK~~~------------~~~~~~~v~~~~~~sL~ 104 (104)
++.|.||+.. .+.+.++|..+++.||+
T Consensus 76 kieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~ 114 (298)
T COG4989 76 KIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLI 114 (298)
T ss_pred heEeeeccccccccccccccccccCcHHHHHHHHHHHHH
Confidence 9999999953 25678999999999984
No 18
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=78.80 E-value=6.5 Score=29.54 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=36.6
Q ss_pred cCcccCCHHHHHHHHHHHHHcCCCeEeCCCCCC-------ChHHHHHHHHHHHhcCCCCCCCcEEEEecc
Q 041817 23 GTVEYPLNEAFKERVLHAIKLGYRHFDTAASYP-------SEQPLGEALAEALRLGLVKSRDELFITSKL 85 (104)
Q Consensus 23 G~~~~~~~~~~~~~~~~a~~~G~~~~DtA~~Yg-------~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~ 85 (104)
|+.+ ...++.+++..+++.| ....|+ +-+.+.+.+.+.+...+ ..+|+||++-+
T Consensus 75 ~~~~--ts~~a~~Av~~al~Sg-----k~N~Yaps~G~~~AR~AVAeYl~~~l~~kl--~a~DV~ltsGC 135 (447)
T KOG0259|consen 75 PCFR--TSQEAEQAVVDALRSG-----KGNGYAPSVGILPARRAVAEYLNRDLPNKL--TADDVVLTSGC 135 (447)
T ss_pred cccc--CCHHHHHHHHHHHhcC-----CCCCcCCccccHHHHHHHHHHhhcCCCCcc--CcCceEEeccc
Confidence 4444 5678899999999988 345666 34556666554444334 78999999766
No 19
>PF11181 YflT: Heat induced stress protein YflT
Probab=68.01 E-value=12 Score=22.27 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=22.9
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCcEEEEecc
Q 041817 54 YPSEQPLGEALAEALRLGLVKSRDELFITSKL 85 (104)
Q Consensus 54 Yg~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~ 85 (104)
|.++..+-.+|.++...|. ..++|+|.||-
T Consensus 6 ~~~~~E~~~~I~~L~~~Gy--~~ddI~Vva~d 35 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQGY--SEDDIYVVAKD 35 (103)
T ss_pred ECCHHHHHHHHHHHHHcCC--CcccEEEEEcC
Confidence 4577777777877777787 78888888873
No 20
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=66.14 E-value=12 Score=22.70 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCC
Q 041817 29 LNEAFKERVLHAIKLGYRHFDTAASYP 55 (104)
Q Consensus 29 ~~~~~~~~~~~a~~~G~~~~DtA~~Yg 55 (104)
+...+.+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 567788999999999999999999995
No 21
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=65.18 E-value=31 Score=21.56 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcCCCeEeCCCCCC-----------------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCC
Q 041817 33 FKERVLHAIKLGYRHFDTAASYP-----------------SEQPLGEALAEALRLGLVKSRDELFITSKLWL 87 (104)
Q Consensus 33 ~~~~~~~a~~~G~~~~DtA~~Yg-----------------~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~~~ 87 (104)
....+..+++.|+|+||.--.++ .-+.+-+.+++++..+ +.+-|++.-|-..
T Consensus 30 q~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~---p~e~VIl~l~~~~ 98 (135)
T smart00148 30 SVEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTFTLPIKLSEVLEAIKDFAFVT---SPYPVILSLENHC 98 (135)
T ss_pred cHHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcccccEEHHHHHHHHHHHHHhC---CCCcEEEeehhhC
Confidence 35678889999999998632222 1233444455554444 5677777777544
No 22
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=63.76 E-value=17 Score=27.22 Aligned_cols=28 Identities=18% Similarity=-0.072 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCC
Q 041817 29 LNEAFKERVLHAIKLGYRHFDTAASYPS 56 (104)
Q Consensus 29 ~~~~~~~~~~~a~~~G~~~~DtA~~Yg~ 56 (104)
++....+++++|++.|+.++|||.+.-.
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~~ 104 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEEP 104 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCch
Confidence 3455668999999999999999987754
No 23
>PRK05406 LamB/YcsF family protein; Provisional
Probab=55.18 E-value=58 Score=22.88 Aligned_cols=68 Identities=13% Similarity=0.014 Sum_probs=45.3
Q ss_pred eecCcccCCHHHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCC----------CC
Q 041817 21 GFGTVEYPLNEAFKERVLHAIKLGYRHFDTAASYPSEQPLGEALAEALRLGLVKSRDELFITSKLWLT----------DS 90 (104)
Q Consensus 21 g~G~~~~~~~~~~~~~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~~~~----------~~ 90 (104)
+||.|.++++++..+.+..|- |=|..+.|....+-+.++.. +..++-|-..-... ..
T Consensus 13 ~fG~w~~g~D~~lmp~IssAN------IACG~HAGDp~~M~~tv~lA-------~~~gV~IGAHPgypD~~gFGRR~m~~ 79 (246)
T PRK05406 13 SFGAWKMGDDEALLPLVTSAN------IACGFHAGDPAVMRRTVRLA-------KENGVAIGAHPGYPDLEGFGRRNMDL 79 (246)
T ss_pred CCCCCCCCCHHHHHHHhhhHH------HhccccCCCHHHHHHHHHHH-------HHcCCeEccCCCCCccCCCCCCCCCC
Confidence 789999888888888888773 23445677788888888766 34456666554221 34
Q ss_pred ChhhHHHHHHh
Q 041817 91 YCGRVIPGLQK 101 (104)
Q Consensus 91 ~~~~v~~~~~~ 101 (104)
++++++..+.-
T Consensus 80 s~~el~~~v~y 90 (246)
T PRK05406 80 SPEELYALVLY 90 (246)
T ss_pred CHHHHHHHHHH
Confidence 66766666543
No 24
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=54.34 E-value=75 Score=24.80 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCC--ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCC
Q 041817 29 LNEAFKERVLHAIKLGYRHFDTAASYP--SEQPLGEALAEALRLGLVKSRDELFITSKLWLT 88 (104)
Q Consensus 29 ~~~~~~~~~~~a~~~G~~~~DtA~~Yg--~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~~~~ 88 (104)
+.+-+.+++.+...+|.+.|.-++.=| +...+|+.|+-+ ..+.- .|+++.|++.+++.
T Consensus 202 e~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~-~tn~~-~~e~v~Is~HcHND 261 (560)
T KOG2367|consen 202 ELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYL-KTNTP-GREKVCISTHCHND 261 (560)
T ss_pred cHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHH-HccCC-CceeEEEEEeecCC
Confidence 456688999999999999998887777 677888877654 33432 58999999999763
No 25
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=54.03 E-value=36 Score=21.00 Aligned_cols=15 Identities=33% Similarity=0.206 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHhcC
Q 041817 57 EQPLGEALAEALRLG 71 (104)
Q Consensus 57 E~~~g~~l~~~~~~~ 71 (104)
+..+.++|.+....|
T Consensus 55 ~p~~~eaL~~l~~~G 69 (127)
T cd03412 55 VDTPEEALAKLAADG 69 (127)
T ss_pred CCCHHHHHHHHHHCC
Confidence 344555555554444
No 26
>PRK12569 hypothetical protein; Provisional
Probab=51.90 E-value=68 Score=22.54 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=46.0
Q ss_pred eecCcccCC--HHHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCC----------
Q 041817 21 GFGTVEYPL--NEAFKERVLHAIKLGYRHFDTAASYPSEQPLGEALAEALRLGLVKSRDELFITSKLWLT---------- 88 (104)
Q Consensus 21 g~G~~~~~~--~~~~~~~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~~~~---------- 88 (104)
+||.|.+++ +++..+.+..|- |=|..+.|.....-+.++.. +..++-|-..-...
T Consensus 14 sfG~~~~g~~~D~~lmp~ItsaN------IACG~HAGDp~~M~~tv~lA-------~~~~V~IGAHPsyPD~~gFGRr~m 80 (245)
T PRK12569 14 GFGPWRIGDGVDEALMPLISSAN------IATGFHAGDPNIMRRTVELA-------KAHGVGIGAHPGFRDLVGFGRRHI 80 (245)
T ss_pred CCCCcCCCCccHHHHHHHhhhHH------HhccccCCCHHHHHHHHHHH-------HHcCCEeccCCCCCcCCCCCCCCC
Confidence 689999988 888888888773 23445678888888888876 44556666554221
Q ss_pred CCChhhHHHHHHh
Q 041817 89 DSYCGRVIPGLQK 101 (104)
Q Consensus 89 ~~~~~~v~~~~~~ 101 (104)
..+++.+++.+..
T Consensus 81 ~~s~~el~~~v~y 93 (245)
T PRK12569 81 NASPQELVNDVLY 93 (245)
T ss_pred CCCHHHHHHHHHH
Confidence 3466777666543
No 27
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=51.33 E-value=14 Score=23.15 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCCeEeC
Q 041817 34 KERVLHAIKLGYRHFDT 50 (104)
Q Consensus 34 ~~~~~~a~~~G~~~~Dt 50 (104)
...+...++.|+|+||-
T Consensus 29 ~~~i~~QL~~GiR~lDl 45 (146)
T PF00388_consen 29 SWSIREQLESGIRYLDL 45 (146)
T ss_dssp SHHHHHHHHTT--EEEE
T ss_pred hHhHHHHHhccCceEEE
Confidence 35788899999999987
No 28
>KOG2371 consensus Molybdopterin biosynthesis protein [Coenzyme transport and metabolism]
Probab=50.29 E-value=40 Score=25.28 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEecc
Q 041817 31 EAFKERVLHAIKLGYRHFDTAASYPSEQPLGEALAEALRLGLVKSRDELFITSKL 85 (104)
Q Consensus 31 ~~~~~~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~ 85 (104)
....+.+....+.|++.||++..--+-+.+-+.|++.+ .+.|+.|+|-.
T Consensus 215 ~n~s~l~~l~~~~Gf~~i~~gvv~D~~~~i~e~L~e~~------~~aDvIlTtGG 263 (411)
T KOG2371|consen 215 SNRSQLLELFQEHGFTAIDAGVVPDDVTRIKEKLREAS------SFADVILTTGG 263 (411)
T ss_pred cchHHHHHHHHHhCccccccccccCcHHHHHHHHHHhh------hhccEEEecCC
Confidence 44567788888999999999888777777777777642 67888888764
No 29
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=49.36 E-value=3.9 Score=22.53 Aligned_cols=39 Identities=18% Similarity=0.013 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCCC-ChHHHHHHHHHHH
Q 041817 30 NEAFKERVLHAIKLGYRHFDTAASYP-SEQPLGEALAEAL 68 (104)
Q Consensus 30 ~~~~~~~~~~a~~~G~~~~DtA~~Yg-~E~~~g~~l~~~~ 68 (104)
++.-.++|..++..|.+.-+.|..|| +...+..|++.+.
T Consensus 9 ~e~K~~~v~~~~~~g~sv~~va~~~gi~~~~l~~W~~~~~ 48 (76)
T PF01527_consen 9 PEFKLQAVREYLESGESVSEVAREYGISPSTLYNWRKQYR 48 (76)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCceEeeecccccccccccHHHHHHh
Confidence 55667888888899999999999999 9999999999874
No 30
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=48.94 E-value=8.7 Score=26.39 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=12.5
Q ss_pred cCCCeEeCCCCCCC
Q 041817 43 LGYRHFDTAASYPS 56 (104)
Q Consensus 43 ~G~~~~DtA~~Yg~ 56 (104)
.|.++|+||+.||.
T Consensus 199 ~G~ryF~c~p~yGg 212 (234)
T KOG3206|consen 199 NGKRYFECAPKYGG 212 (234)
T ss_pred cceEeeecCCccCC
Confidence 59999999999983
No 31
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=48.48 E-value=23 Score=25.47 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=25.2
Q ss_pred cccceeeecCcccC-------------CHHHHHHHHHHHHHcCCCeE
Q 041817 15 KSIPLVGFGTVEYP-------------LNEAFKERVLHAIKLGYRHF 48 (104)
Q Consensus 15 ~~ip~ig~G~~~~~-------------~~~~~~~~~~~a~~~G~~~~ 48 (104)
.-+|.-||||--++ +.....=+++.|+++|+..|
T Consensus 7 AViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i 53 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEI 53 (291)
T ss_pred EEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEE
Confidence 35788899986652 34556778999999999753
No 32
>PRK10799 metal-binding protein; Provisional
Probab=48.03 E-value=37 Score=23.47 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=22.8
Q ss_pred HHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHh
Q 041817 36 RVLHAIKLGYRHFDTAASYPSEQPLGEALAEALR 69 (104)
Q Consensus 36 ~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~~ 69 (104)
....|.+.|++.+| +.||.+|...-+.+.+.++
T Consensus 199 ~~~~A~~~gl~li~-~GH~~sE~~~~~~la~~L~ 231 (247)
T PRK10799 199 TIHSAREQGLHFYA-AGHHATERGGIRALSEWLN 231 (247)
T ss_pred HHHHHHHCCCeEEE-cCchHHHHHHHHHHHHHHH
Confidence 35667889999998 4577788774555555443
No 33
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=47.57 E-value=81 Score=22.29 Aligned_cols=65 Identities=22% Similarity=0.081 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEecc-CCC--CCChhhHHHHHHh
Q 041817 31 EAFKERVLHAIKLGYRHFDTAASYPSEQPLGEALAEALRLGLVKSRDELFITSKL-WLT--DSYCGRVIPGLQK 101 (104)
Q Consensus 31 ~~~~~~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~-~~~--~~~~~~v~~~~~~ 101 (104)
..+.-+-+...+.|+...-..-+--++..+-++++... .|.|++|+|=. +|+ |.+.+.+-+++..
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~------~r~D~vI~tGGLGPT~DDiT~e~vAka~g~ 88 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALREAS------ERADVVITTGGLGPTHDDLTAEAVAKALGR 88 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHH------hCCCEEEECCCcCCCccHhHHHHHHHHhCC
Confidence 44555667777899988766655558999999998863 67899998874 554 3344444444433
No 34
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=46.11 E-value=82 Score=20.51 Aligned_cols=43 Identities=26% Similarity=0.306 Sum_probs=29.5
Q ss_pred HHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEec
Q 041817 36 RVLHAIKLGYRHFDTAASYPSEQPLGEALAEALRLGLVKSRDELFITSK 84 (104)
Q Consensus 36 ~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~~~~~~~~r~~~~i~tK 84 (104)
+-....+.|++.....-.--++..+-++|+... .+.|++|+|=
T Consensus 24 l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~------~~~dlVIttG 66 (170)
T cd00885 24 LAKELAELGIEVYRVTVVGDDEDRIAEALRRAS------ERADLVITTG 66 (170)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH------hCCCEEEECC
Confidence 333444679887665544447788888888752 5788999984
No 35
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=44.91 E-value=18 Score=25.32 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCC--ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCC------CChhhHHHHHHhh
Q 041817 31 EAFKERVLHAIKLGYRHFDTAASYP--SEQPLGEALAEALRLGLVKSRDELFITSKLWLTD------SYCGRVIPGLQKT 102 (104)
Q Consensus 31 ~~~~~~~~~a~~~G~~~~DtA~~Yg--~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~~~~~------~~~~~v~~~~~~s 102 (104)
....+.++.+-+.|++.++.+...- +++..-++|+.. +...+.+-+-+...+ .+++...+.++.-
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~-------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~d 156 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA-------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRD 156 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH-------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH-------HHCCCEEeecccCCCchhcccCCHHHHHHHHHHH
Confidence 3456778888889999999988776 677777788876 555577777776532 2244555555443
No 36
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=44.83 E-value=22 Score=22.00 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=21.5
Q ss_pred cccceeeecCcccCCHHHHHHHHHHHHH
Q 041817 15 KSIPLVGFGTVEYPLNEAFKERVLHAIK 42 (104)
Q Consensus 15 ~~ip~ig~G~~~~~~~~~~~~~~~~a~~ 42 (104)
+-+|.||-|...+ +.+++.++++..++
T Consensus 112 va~P~iG~G~~G~-~w~~v~~ii~~~~~ 138 (140)
T cd02901 112 VAMPRIGCGLGGL-DWEEVEPLIEKALA 138 (140)
T ss_pred EeeCCCCCcCCCC-CHHHHHHHHHHHhc
Confidence 7789999888884 77888888887764
No 37
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=42.44 E-value=37 Score=21.37 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=10.0
Q ss_pred CeEeCCCCCC-ChHHHHHHH
Q 041817 46 RHFDTAASYP-SEQPLGEAL 64 (104)
Q Consensus 46 ~~~DtA~~Yg-~E~~~g~~l 64 (104)
-=||+|.-|| .++.+.+.-
T Consensus 26 VKFD~ayPyGeKhd~F~~~A 45 (126)
T PF07912_consen 26 VKFDVAYPYGEKHDAFKKLA 45 (126)
T ss_dssp EEEEESS--CHHHHHHHHHH
T ss_pred EEEeccCCCcchHHHHHHHH
Confidence 3478888888 444555443
No 38
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=42.02 E-value=17 Score=22.25 Aligned_cols=40 Identities=10% Similarity=-0.151 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCC-ChHHHHHHHHHHH
Q 041817 29 LNEAFKERVLHAIKLGYRHFDTAASYP-SEQPLGEALAEAL 68 (104)
Q Consensus 29 ~~~~~~~~~~~a~~~G~~~~DtA~~Yg-~E~~~g~~l~~~~ 68 (104)
+.+.-.+++...++.|.+.-+.|.-|| ++..+-.|++++.
T Consensus 14 s~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y~ 54 (121)
T PRK09413 14 TTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQ 54 (121)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 355557788889999999999999999 9999999999873
No 39
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=41.99 E-value=33 Score=23.92 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCC--ChHHHHHHHHHH
Q 041817 31 EAFKERVLHAIKLGYRHFDTAASYP--SEQPLGEALAEA 67 (104)
Q Consensus 31 ~~~~~~~~~a~~~G~~~~DtA~~Yg--~E~~~g~~l~~~ 67 (104)
....+.++.+-+.|+..++.+...- +++..-++++..
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~ 109 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERA 109 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHH
Confidence 3445566677788888888887765 666666666665
No 40
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=40.75 E-value=50 Score=21.71 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=19.8
Q ss_pred cCCCeEeCCCCCC----ChHHHHHHHHHHHh
Q 041817 43 LGYRHFDTAASYP----SEQPLGEALAEALR 69 (104)
Q Consensus 43 ~G~~~~DtA~~Yg----~E~~~g~~l~~~~~ 69 (104)
.|+.|+||-..|. +...+|+-++.++.
T Consensus 24 ~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~ 54 (178)
T COG0563 24 LGLPHLDTGDILRAAIAERTELGEEIKKYID 54 (178)
T ss_pred hCCcEEcHhHHhHhhhccCChHHHHHHHHHH
Confidence 8999999988886 34566666666544
No 41
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=39.41 E-value=1e+02 Score=19.80 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=10.7
Q ss_pred HHHHHHHHcCCCeEeCCCCCC
Q 041817 35 ERVLHAIKLGYRHFDTAASYP 55 (104)
Q Consensus 35 ~~~~~a~~~G~~~~DtA~~Yg 55 (104)
+++.+|++.....+=-+..|+
T Consensus 54 e~v~aA~~~dv~vIgvSsl~g 74 (143)
T COG2185 54 EAVRAAVEEDVDVIGVSSLDG 74 (143)
T ss_pred HHHHHHHhcCCCEEEEEeccc
Confidence 344555555555555555555
No 42
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=39.28 E-value=40 Score=23.68 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=10.3
Q ss_pred eecCcccCCHHHHHHHHH
Q 041817 21 GFGTVEYPLNEAFKERVL 38 (104)
Q Consensus 21 g~G~~~~~~~~~~~~~~~ 38 (104)
|||.|+++++++..+.+.
T Consensus 13 ~fG~w~mG~De~~l~lvs 30 (252)
T COG1540 13 GFGAWRMGDDEALLPLVS 30 (252)
T ss_pred ccCCcccCCcHHHHHHHh
Confidence 688888854444333333
No 43
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=38.68 E-value=77 Score=21.17 Aligned_cols=27 Identities=7% Similarity=0.160 Sum_probs=19.0
Q ss_pred CcEEEEeccCCCCCChhhHHHHHHhhh
Q 041817 77 DELFITSKLWLTDSYCGRVIPGLQKTL 103 (104)
Q Consensus 77 ~~~~i~tK~~~~~~~~~~v~~~~~~sL 103 (104)
.|+.|..-+.+.......+.+.+++.|
T Consensus 101 aDvIIIDEIGpMElks~~f~~~ve~vl 127 (179)
T COG1618 101 ADVIIIDEIGPMELKSKKFREAVEEVL 127 (179)
T ss_pred CCEEEEecccchhhccHHHHHHHHHHh
Confidence 478888888777666666777776655
No 44
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.56 E-value=94 Score=19.03 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCC--ChHHHHHHHHHHHhcCCCCCCCcEEEEecc
Q 041817 28 PLNEAFKERVLHAIKLGYRHFDTAASYP--SEQPLGEALAEALRLGLVKSRDELFITSKL 85 (104)
Q Consensus 28 ~~~~~~~~~~~~a~~~G~~~~DtA~~Yg--~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~ 85 (104)
.|....+.+.--++++|.-|+-|-..|. .|-.+---|-. ..+++++++|+
T Consensus 17 KD~a~LYsaYMpfl~nGglFVpTnk~y~iG~evfl~l~lld--------~pekl~vagkV 68 (117)
T COG3215 17 KDMALLYSAYMPFLENGGLFVPTNKVYSIGEEVFLLLELLD--------FPEKLPVAGKV 68 (117)
T ss_pred hhHHHHHHHHhHHHhcCcEEcccCCccccchhhhhhhhhcC--------chhhccccceE
Confidence 3455566777778999999999999997 33332222211 24578899986
No 45
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=38.45 E-value=1.3e+02 Score=20.67 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCCCC-------hHHHHHHHHHHH
Q 041817 30 NEAFKERVLHAIKLGYRHFDTAASYPS-------EQPLGEALAEAL 68 (104)
Q Consensus 30 ~~~~~~~~~~a~~~G~~~~DtA~~Yg~-------E~~~g~~l~~~~ 68 (104)
.....+.++.|++.|.+.|-.+..... .+.+.+++++..
T Consensus 88 ~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~ 133 (247)
T cd07491 88 PQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEAL 133 (247)
T ss_pred HHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHHHHHHHH
Confidence 456789999999999999998865432 567888888763
No 46
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=37.49 E-value=33 Score=22.12 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=20.2
Q ss_pred cccceeeecCcccCCHHHHHHHHHHHH
Q 041817 15 KSIPLVGFGTVEYPLNEAFKERVLHAI 41 (104)
Q Consensus 15 ~~ip~ig~G~~~~~~~~~~~~~~~~a~ 41 (104)
+.||+||.|... .+-+..+++++..+
T Consensus 124 VhmPrIg~Gl~g-~~W~~~E~li~k~l 149 (152)
T cd03331 124 VHLPRIGHSTKS-FNWYGTERLIRKYL 149 (152)
T ss_pred EEeCCCCCCCCC-CCHHHHHHHHHHHh
Confidence 789999999877 46777777777654
No 47
>COG1795 Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion]
Probab=37.05 E-value=78 Score=20.77 Aligned_cols=33 Identities=15% Similarity=0.524 Sum_probs=23.4
Q ss_pred CCC-ChHHHHHHHHHHHhcCCCCCC---CcEEEEeccC
Q 041817 53 SYP-SEQPLGEALAEALRLGLVKSR---DELFITSKLW 86 (104)
Q Consensus 53 ~Yg-~E~~~g~~l~~~~~~~~~~~r---~~~~i~tK~~ 86 (104)
.+| ++..+.++..+++++|++ +| +|++|.+-.|
T Consensus 79 ~fGpaQ~AVAkAVadsveegii-p~e~~dd~vvi~svf 115 (170)
T COG1795 79 IFGPAQAAVAKAVADSVEEGII-PREQADDVVVIVSVF 115 (170)
T ss_pred hhcHHHHHHHHHHHHHHHhcCC-ChhHhcCEEEEEEeE
Confidence 345 567788888888888876 66 4677766654
No 48
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=36.14 E-value=87 Score=23.65 Aligned_cols=47 Identities=19% Similarity=0.154 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccC
Q 041817 34 KERVLHAIKLGYRHFDTAASYPSEQPLGEALAEALRLGLVKSRDELFITSKLW 86 (104)
Q Consensus 34 ~~~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~~ 86 (104)
..+|++++++|-.|+|.+- |...-+-++..-++-. ++..++|.+=+.
T Consensus 99 E~VVkacienG~~~vDISG----EP~f~E~mq~kYhd~A--~ekGVYIVsaCG 145 (423)
T KOG2733|consen 99 EPVVKACIENGTHHVDISG----EPQFMERMQLKYHDLA--KEKGVYIVSACG 145 (423)
T ss_pred cHHHHHHHHcCCceeccCC----CHHHHHHHHHHHHHHH--HhcCeEEEeecc
Confidence 4689999999999999873 3333333332211111 566688877763
No 49
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=35.84 E-value=70 Score=22.31 Aligned_cols=35 Identities=37% Similarity=0.425 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHH
Q 041817 33 FKERVLHAIKLGYRHFDTAASYPSEQPLGEALAEAL 68 (104)
Q Consensus 33 ~~~~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~ 68 (104)
.......|.+.|+++|| |-+|.+|...-+.+.+.+
T Consensus 199 ~~~~~~~a~e~gi~~i~-~gH~~tE~~g~~~l~~~l 233 (250)
T COG0327 199 SHHTAHDARELGLSVID-AGHYATERPGLKALAELL 233 (250)
T ss_pred cHHHHHHHHHCCCeEEe-cCchHHHHHHHHHHHHHH
Confidence 44678889999999999 567777776555655543
No 50
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=35.66 E-value=67 Score=16.48 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCCC-ChHHHHHHHHHH
Q 041817 32 AFKERVLHAIKLGYRHFDTAASYP-SEQPLGEALAEA 67 (104)
Q Consensus 32 ~~~~~~~~a~~~G~~~~DtA~~Yg-~E~~~g~~l~~~ 67 (104)
+-.-++-.-++.|.++-|.|..|| ++..+.+.++..
T Consensus 7 d~lll~L~~LR~~~~~~~La~~FgIs~stvsri~~~~ 43 (53)
T PF13613_consen 7 DQLLLTLMYLRLNLTFQDLAYRFGISQSTVSRIFHEW 43 (53)
T ss_pred HHHHHHHHHHHcCCcHhHHhhheeecHHHHHHHHHHH
Confidence 333455566788999999999999 888888887754
No 51
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=35.62 E-value=53 Score=15.28 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHcCCC
Q 041817 30 NEAFKERVLHAIKLGYR 46 (104)
Q Consensus 30 ~~~~~~~~~~a~~~G~~ 46 (104)
+++..+++..|.+.|++
T Consensus 2 D~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 2 DEEWVELIKEAKESGLS 18 (30)
T ss_dssp -HHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHcCCC
Confidence 35677888899998875
No 52
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=35.49 E-value=1.6e+02 Score=20.90 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=24.9
Q ss_pred eCCCCCC---ChHHHHHHHHHHHhcCCCCCCCcEEEEecc
Q 041817 49 DTAASYP---SEQPLGEALAEALRLGLVKSRDELFITSKL 85 (104)
Q Consensus 49 DtA~~Yg---~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~ 85 (104)
+--.+|| +|+.+.-.|+...+... .+++++|..-+
T Consensus 45 ~~ns~y~~s~~EK~lRg~L~S~v~R~L--sk~~iVI~Dsl 82 (281)
T KOG3062|consen 45 EKNSNYGDSQAEKALRGKLRSAVDRSL--SKGDIVIVDSL 82 (281)
T ss_pred CCcccccccHHHHHHHHHHHHHHHhhc--ccCcEEEEecc
Confidence 3446787 68888878887666565 78888887544
No 53
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=34.09 E-value=77 Score=23.50 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCC
Q 041817 29 LNEAFKERVLHAIKLGYRHFDTAASYP 55 (104)
Q Consensus 29 ~~~~~~~~~~~a~~~G~~~~DtA~~Yg 55 (104)
+...+.+++...++.|.+.||++..|.
T Consensus 79 Phg~s~~~v~~l~~~g~~VIDLSadfR 105 (349)
T COG0002 79 PHGVSAELVPELLEAGCKVIDLSADFR 105 (349)
T ss_pred CchhHHHHHHHHHhCCCeEEECCcccc
Confidence 567889999999999999999999887
No 54
>TIGR03126 one_C_fae formaldehyde-activating enzyme. This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.
Probab=33.95 E-value=82 Score=20.68 Aligned_cols=32 Identities=19% Similarity=0.560 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCC---CcEEEEeccCCC
Q 041817 56 SEQPLGEALAEALRLGLVKSR---DELFITSKLWLT 88 (104)
Q Consensus 56 ~E~~~g~~l~~~~~~~~~~~r---~~~~i~tK~~~~ 88 (104)
.+..+++++..++.+|.+ ++ +|++|..-+|-+
T Consensus 81 aQ~avA~AVaD~V~eG~i-P~~~addl~Iiv~Vfi~ 115 (160)
T TIGR03126 81 AQAAVAKAVADSVEEGII-PKDEADDLVIIVSVFIH 115 (160)
T ss_pred HHHHHHHHHHHHHHcCCC-ChhhhCcEEEEEEEEec
Confidence 567788888888888876 54 568887777643
No 55
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=33.92 E-value=40 Score=20.70 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=20.4
Q ss_pred cccceeeecCcccCCHHHHHHHHHHHHH
Q 041817 15 KSIPLVGFGTVEYPLNEAFKERVLHAIK 42 (104)
Q Consensus 15 ~~ip~ig~G~~~~~~~~~~~~~~~~a~~ 42 (104)
+-+|.||-|...+ +.+++.+++..+++
T Consensus 107 IA~P~igtG~~g~-~~~~~a~i~~~~i~ 133 (133)
T cd03330 107 VAFPAMGTGVGGL-PKEDVARLMVEVIE 133 (133)
T ss_pred EEECcccccCCCC-CHHHHHHHHHHHhC
Confidence 6778888888774 67888888777653
No 56
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=33.39 E-value=1.3e+02 Score=21.45 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=39.9
Q ss_pred CCCcccceeeecCcc---cCC-----HHHH----HHHHHHHHHcCCCeEeCCC--CC-C--ChHHHHHHH---HHHHhcC
Q 041817 12 STEKSIPLVGFGTVE---YPL-----NEAF----KERVLHAIKLGYRHFDTAA--SY-P--SEQPLGEAL---AEALRLG 71 (104)
Q Consensus 12 ~~~~~ip~ig~G~~~---~~~-----~~~~----~~~~~~a~~~G~~~~DtA~--~Y-g--~E~~~g~~l---~~~~~~~ 71 (104)
+| +.+|.++|..-+ ++. .+++ .+++..|.+.|||.|-.|. +| . +|+...+++ +....--
T Consensus 66 tg-v~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~lA 144 (287)
T COG3623 66 TG-VRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVELA 144 (287)
T ss_pred hC-CCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 45 888988887644 221 2233 3556666789999998873 33 2 554444433 3321111
Q ss_pred CCCCCCcEEEEeccC
Q 041817 72 LVKSRDELFITSKLW 86 (104)
Q Consensus 72 ~~~~r~~~~i~tK~~ 86 (104)
.+.+|.++--+.
T Consensus 145 ---~~aqV~lAvEiM 156 (287)
T COG3623 145 ---ARAQVMLAVEIM 156 (287)
T ss_pred ---HhhccEEEeeec
Confidence 456666665554
No 57
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=33.03 E-value=1.3e+02 Score=19.00 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=8.5
Q ss_pred cCCCeEeCCCCCCChHHHHH
Q 041817 43 LGYRHFDTAASYPSEQPLGE 62 (104)
Q Consensus 43 ~G~~~~DtA~~Yg~E~~~g~ 62 (104)
+||..+|....=-.|+.+..
T Consensus 28 ~GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 28 AGFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 45555554333323333333
No 58
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.78 E-value=29 Score=23.92 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=14.7
Q ss_pred CeEeCCCCCCChHHHHHHHHH
Q 041817 46 RHFDTAASYPSEQPLGEALAE 66 (104)
Q Consensus 46 ~~~DtA~~Yg~E~~~g~~l~~ 66 (104)
-|+|||+.|+.-+.|=.+|++
T Consensus 50 EFWdTapAf~GrKEIWDaL~a 70 (231)
T KOG0013|consen 50 EFWDTAPAFGGRKEIWDALHA 70 (231)
T ss_pred hhhhcccccCCcHHHHHHHHH
Confidence 578999999955555555543
No 59
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=32.24 E-value=1.3e+02 Score=18.79 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=28.4
Q ss_pred HHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEec
Q 041817 40 AIKLGYRHFDTAASYPSEQPLGEALAEALRLGLVKSRDELFITSK 84 (104)
Q Consensus 40 a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~~~~~~~~r~~~~i~tK 84 (104)
..+.|+.........-.++.+-++|++.. .+.|++|+|=
T Consensus 36 l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~------~~~DliIttG 74 (144)
T TIGR00177 36 LEEAGFNVSRLGIVPDDPEEIREILRKAV------DEADVVLTTG 74 (144)
T ss_pred HHHCCCeEEEEeecCCCHHHHHHHHHHHH------hCCCEEEECC
Confidence 44579887776666667778888887652 5689999984
No 60
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=31.83 E-value=69 Score=18.50 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHcCCCeE
Q 041817 29 LNEAFKERVLHAIKLGYRHF 48 (104)
Q Consensus 29 ~~~~~~~~~~~a~~~G~~~~ 48 (104)
|.+.+.+..+.++++|++-+
T Consensus 71 P~~~a~~~~~~~~~~gIk~i 90 (96)
T PF02629_consen 71 PAEAAQEVADELVEAGIKGI 90 (96)
T ss_dssp -HHHHHHHHHHHHHTT-SEE
T ss_pred CHHHHHHHHHHHHHcCCCEE
Confidence 67889999999999999865
No 61
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=31.83 E-value=52 Score=23.00 Aligned_cols=35 Identities=17% Similarity=0.084 Sum_probs=28.5
Q ss_pred cCcccCCHHHHHHHHHHHHHcCCCeEeCCCCCCCh
Q 041817 23 GTVEYPLNEAFKERVLHAIKLGYRHFDTAASYPSE 57 (104)
Q Consensus 23 G~~~~~~~~~~~~~~~~a~~~G~~~~DtA~~Yg~E 57 (104)
|-|+.++.+.+-.++.-|+..||++--....|.++
T Consensus 76 GYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q 110 (270)
T KOG4627|consen 76 GYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQ 110 (270)
T ss_pred chhhcCchhcccchhhhhhhcCeEEEEeccCcCcc
Confidence 45666788889999999999999998777777654
No 62
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=31.10 E-value=64 Score=14.91 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=12.9
Q ss_pred HHHHHHHHHcCCCeEeC
Q 041817 34 KERVLHAIKLGYRHFDT 50 (104)
Q Consensus 34 ~~~~~~a~~~G~~~~Dt 50 (104)
.+.++.++++|+..|-|
T Consensus 10 ~~~~~~~l~~GVDgI~T 26 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMT 26 (30)
T ss_dssp HHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHcCCCEeeC
Confidence 45778999999988866
No 63
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=31.01 E-value=55 Score=21.86 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=21.1
Q ss_pred cccceeeecCcccCCHHHHHHHHHHHHH
Q 041817 15 KSIPLVGFGTVEYPLNEAFKERVLHAIK 42 (104)
Q Consensus 15 ~~ip~ig~G~~~~~~~~~~~~~~~~a~~ 42 (104)
+-+|.||-|...+ +.+++.+.+..|++
T Consensus 157 Ia~P~igTGvgg~-p~~~aA~~m~~ai~ 183 (186)
T cd02900 157 LVLPGLGTGYGGV-PPEIAAKQMAFAIR 183 (186)
T ss_pred EEECchhcCCCCC-CHHHHHHHHHHHHH
Confidence 7788999898885 67777777777765
No 64
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=30.76 E-value=1.9e+02 Score=20.28 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=23.1
Q ss_pred eeeecCcccCCHHHHHHHHHHHHHcCCCeE
Q 041817 19 LVGFGTVEYPLNEAFKERVLHAIKLGYRHF 48 (104)
Q Consensus 19 ~ig~G~~~~~~~~~~~~~~~~a~~~G~~~~ 48 (104)
++|+||+.+.+.+...+.++.|.++|+..+
T Consensus 42 K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~ 71 (244)
T PF02679_consen 42 KFGWGTSALYPEEILKEKIDLAHSHGVYVY 71 (244)
T ss_dssp EE-TTGGGGSTCHHHHHHHHHHHCTT-EEE
T ss_pred EecCceeeecCHHHHHHHHHHHHHcCCeEe
Confidence 578888888778888999999999887654
No 65
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=30.55 E-value=84 Score=20.83 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCC
Q 041817 28 PLNEAFKERVLHAIKLGYRHFDTAASY 54 (104)
Q Consensus 28 ~~~~~~~~~~~~a~~~G~~~~DtA~~Y 54 (104)
.+++...++++...+.||+.+|+=.-|
T Consensus 10 ~~~~~l~~A~~~~r~~G~~~~d~ytPf 36 (173)
T PF11821_consen 10 DDPEALLHAARKLRDAGYRIWDVYTPF 36 (173)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEeCCC
Confidence 478888999999999999999984333
No 66
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=30.48 E-value=53 Score=19.49 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCCCeEeCCC
Q 041817 33 FKERVLHAIKLGYRHFDTAA 52 (104)
Q Consensus 33 ~~~~~~~a~~~G~~~~DtA~ 52 (104)
...+++.|.+.|++.||-..
T Consensus 116 ~~~~i~~a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 116 LWEAIRWAIERGLRYFDFGG 135 (142)
T ss_pred HHHHHHHHHHCCCCEEEECC
Confidence 45889999999999999754
No 67
>PF13518 HTH_28: Helix-turn-helix domain
Probab=30.24 E-value=34 Score=16.95 Aligned_cols=36 Identities=14% Similarity=0.006 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCCeEeCCCCCC-ChHHHHHHHHHHHhcC
Q 041817 35 ERVLHAIKLGYRHFDTAASYP-SEQPLGEALAEALRLG 71 (104)
Q Consensus 35 ~~~~~a~~~G~~~~DtA~~Yg-~E~~~g~~l~~~~~~~ 71 (104)
+++.... .|.+.=++|..|| +...+..|++.+.+.|
T Consensus 4 ~iv~~~~-~g~s~~~~a~~~gis~~tv~~w~~~y~~~G 40 (52)
T PF13518_consen 4 QIVELYL-EGESVREIAREFGISRSTVYRWIKRYREGG 40 (52)
T ss_pred HHHHHHH-cCCCHHHHHHHHCCCHhHHHHHHHHHHhcC
Confidence 3445544 4667777888888 8888999998875444
No 68
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.50 E-value=78 Score=22.45 Aligned_cols=17 Identities=29% Similarity=0.212 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHcCC
Q 041817 29 LNEAFKERVLHAIKLGY 45 (104)
Q Consensus 29 ~~~~~~~~~~~a~~~G~ 45 (104)
+.+++.+++..|+++|+
T Consensus 184 t~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 184 TKEEAIKLVCEAIAAGI 200 (271)
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 57889999999999997
No 69
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=28.06 E-value=2.6e+02 Score=21.03 Aligned_cols=54 Identities=30% Similarity=0.387 Sum_probs=41.7
Q ss_pred eeeecCcccC-----------CHHHHHHHHHHHHHcCCCeEeCCCCCC----ChHHHHHHHHHHHhcCC
Q 041817 19 LVGFGTVEYP-----------LNEAFKERVLHAIKLGYRHFDTAASYP----SEQPLGEALAEALRLGL 72 (104)
Q Consensus 19 ~ig~G~~~~~-----------~~~~~~~~~~~a~~~G~~~~DtA~~Yg----~E~~~g~~l~~~~~~~~ 72 (104)
++++|...+. +.+++.+++..+.+.|+..+..=-+|| +.+.+-+-++..+.-+.
T Consensus 150 RiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~p 218 (416)
T COG0635 150 RISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALELGP 218 (416)
T ss_pred EEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCC
Confidence 8899987762 457788999999999999988888998 56666666666654454
No 70
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=27.93 E-value=91 Score=24.37 Aligned_cols=39 Identities=28% Similarity=0.223 Sum_probs=29.6
Q ss_pred ccccee-eecCccc---CCHHHHHHHHHHHHHcCCCe---EeCCCC
Q 041817 15 KSIPLV-GFGTVEY---PLNEAFKERVLHAIKLGYRH---FDTAAS 53 (104)
Q Consensus 15 ~~ip~i-g~G~~~~---~~~~~~~~~~~~a~~~G~~~---~DtA~~ 53 (104)
.+.|.+ ..|.+.. -..+++.++|+.|...|||. |||-.+
T Consensus 230 ~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD~PgH 275 (542)
T KOG2499|consen 230 PTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFDTPGH 275 (542)
T ss_pred CCchhhhhcCCCCcceeecHHHHHHHHHHHHhccceeeecccCCcc
Confidence 456666 6777653 35789999999999999997 687443
No 71
>PF08714 Fae: Formaldehyde-activating enzyme (Fae); InterPro: IPR014826 This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT []. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.; GO: 0016840 carbon-nitrogen lyase activity, 0016051 carbohydrate biosynthetic process; PDB: 1Y60_A 1Y5Y_D.
Probab=27.90 E-value=93 Score=20.43 Aligned_cols=31 Identities=23% Similarity=0.595 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCC---CcEEEEeccCC
Q 041817 56 SEQPLGEALAEALRLGLVKSR---DELFITSKLWL 87 (104)
Q Consensus 56 ~E~~~g~~l~~~~~~~~~~~r---~~~~i~tK~~~ 87 (104)
.+..+++++..++++|.+ ++ +|++|..-+|-
T Consensus 79 aQaavA~AVaD~V~eG~i-P~~~a~dl~Iiv~Vfi 112 (159)
T PF08714_consen 79 AQAAVAKAVADAVEEGII-PKDEADDLVIIVSVFI 112 (159)
T ss_dssp HHHHHHHHHHHHHHTTSS--TTTGGGEEEEEEEE-
T ss_pred HHHHHHHHHHHHHHcCCC-ChhhcCcEEEEEEEEe
Confidence 566788889888888876 55 56888777764
No 72
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=27.80 E-value=84 Score=22.94 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCC
Q 041817 29 LNEAFKERVLHAIKLGYRHFDTAASYP 55 (104)
Q Consensus 29 ~~~~~~~~~~~a~~~G~~~~DtA~~Yg 55 (104)
+.+.+.+.+..+.+.|+..||.+..|.
T Consensus 75 p~~~s~~~v~~~~~~G~~VIDlS~~fR 101 (336)
T PRK05671 75 GAAVSRSFAEKARAAGCSVIDLSGALP 101 (336)
T ss_pred CHHHHHHHHHHHHHCCCeEEECchhhc
Confidence 456778899999999999999987764
No 73
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=27.77 E-value=1.1e+02 Score=22.27 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCC---CeEeCCCCCC---C-hHHHHHHHHHH
Q 041817 31 EAFKERVLHAIKLGY---RHFDTAASYP---S-EQPLGEALAEA 67 (104)
Q Consensus 31 ~~~~~~~~~a~~~G~---~~~DtA~~Yg---~-E~~~g~~l~~~ 67 (104)
..+...++.|-+.|. ++|||+-.|- + |+-.+++|...
T Consensus 137 RKAlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~n 180 (317)
T COG0825 137 RKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARN 180 (317)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHH
Confidence 357778888888885 7899999994 3 34455666554
No 74
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.62 E-value=2.1e+02 Score=19.69 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCC-ChHHHHH
Q 041817 28 PLNEAFKERVLHAIKLGYRHFDTAASYP-SEQPLGE 62 (104)
Q Consensus 28 ~~~~~~~~~~~~a~~~G~~~~DtA~~Yg-~E~~~g~ 62 (104)
.+.+++.++.+..++.|++.++-...=. +.+.+.+
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~ 59 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAE 59 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHH
Confidence 4788999999999999999998765432 4455543
No 75
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=26.89 E-value=70 Score=21.82 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=12.1
Q ss_pred HHHHHHHcCCCeEeCCCC
Q 041817 36 RVLHAIKLGYRHFDTAAS 53 (104)
Q Consensus 36 ~~~~a~~~G~~~~DtA~~ 53 (104)
.+..++..|+..||++..
T Consensus 126 ~i~~~v~~GvD~fDs~~p 143 (238)
T PF01702_consen 126 EILEAVYLGVDLFDSSYP 143 (238)
T ss_dssp HHHHHHHTT--EEEESHH
T ss_pred HHHHHHHcCCcEEcchHH
Confidence 456678899999999753
No 76
>KOG4245 consensus Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=26.44 E-value=1.1e+02 Score=21.15 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=27.4
Q ss_pred eeecCcccCCHHHHHHHHHHHH-HcCCCeEeCCCCC
Q 041817 20 VGFGTVEYPLNEAFKERVLHAI-KLGYRHFDTAASY 54 (104)
Q Consensus 20 ig~G~~~~~~~~~~~~~~~~a~-~~G~~~~DtA~~Y 54 (104)
+|+||..+.+.+.+.+-++.++ +.|+.-|....+-
T Consensus 68 v~lgtlpmn~~e~avee~~rcvk~lg~~g~eigshv 103 (297)
T KOG4245|consen 68 VGLGTLPMNAPELAVEEMERCVKELGFKGFEIGSHV 103 (297)
T ss_pred cccCccCCcCHHHHHHHHHHHHHHcCCCceeecccc
Confidence 6889987767777877788887 8899888776554
No 77
>KOG3267 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.40 E-value=23 Score=21.88 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=11.0
Q ss_pred cCCCCcccc----eeeecCcc
Q 041817 10 LGSTEKSIP----LVGFGTVE 26 (104)
Q Consensus 10 l~~~~~~ip----~ig~G~~~ 26 (104)
++.. +.+| .+.+|+|+
T Consensus 96 ~g~q-ltipit~gklslgtwq 115 (138)
T KOG3267|consen 96 FGCQ-LTIPITKGKLSLGTWQ 115 (138)
T ss_pred ccce-EEEEeccCeecccccc
Confidence 3444 5555 57899998
No 78
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=26.35 E-value=1.2e+02 Score=19.30 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCC
Q 041817 29 LNEAFKERVLHAIKLGYRHFDTAASYP 55 (104)
Q Consensus 29 ~~~~~~~~~~~a~~~G~~~~DtA~~Yg 55 (104)
..+++-+.++.|+++|.+..+-+..||
T Consensus 81 s~eevd~~v~ka~eaGGk~~~~~~d~g 107 (133)
T COG3607 81 SREEVDELVDKALEAGGKPANEPQDEG 107 (133)
T ss_pred cHHHHHHHHHHHHHcCCCCCCCccccc
Confidence 578899999999999998765554443
No 79
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=25.60 E-value=2.7e+02 Score=20.37 Aligned_cols=50 Identities=8% Similarity=-0.010 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCC
Q 041817 34 KERVLHAIKLGYRHFDTAASYPSEQPLGEALAEALRLGLVKSRDELFITSKLWLT 88 (104)
Q Consensus 34 ~~~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~~~~ 88 (104)
.+.+..++++|++.+|+.+...+....-+.|.+..+ ....+.+..-.|..
T Consensus 74 ~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk-----~~g~vsvi~~GwDP 123 (324)
T TIGR01921 74 IPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAK-----AAGNVSVISTGWDP 123 (324)
T ss_pred HHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHH-----HcCCEEEEECCCCc
Confidence 466677799999999997765543333334443321 12345665544443
No 80
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=24.83 E-value=64 Score=17.55 Aligned_cols=18 Identities=6% Similarity=0.355 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCCeEeCC
Q 041817 34 KERVLHAIKLGYRHFDTA 51 (104)
Q Consensus 34 ~~~~~~a~~~G~~~~DtA 51 (104)
.++-..+++.|+.++|--
T Consensus 24 rqAK~~lV~~G~~~Y~nk 41 (59)
T PF11372_consen 24 RQAKALLVQKGFSFYNNK 41 (59)
T ss_pred HHHHHHHHHcCCCcccCC
Confidence 344444577899988753
No 81
>PRK01215 competence damage-inducible protein A; Provisional
Probab=24.67 E-value=2.6e+02 Score=19.71 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=30.1
Q ss_pred HHHHHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEec
Q 041817 36 RVLHAIKLGYRHFDTAASYPSEQPLGEALAEALRLGLVKSRDELFITSK 84 (104)
Q Consensus 36 ~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~~~~~~~~r~~~~i~tK 84 (104)
+-....+.|+......-.--+++.+.++|+... .+.|++|+|=
T Consensus 28 l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~------~~~DlVIttG 70 (264)
T PRK01215 28 IARRLTYLGYTVRRITVVMDDIEEIVSAFREAI------DRADVVVSTG 70 (264)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHh------cCCCEEEEeC
Confidence 334455679887665555457788888888752 5679999994
No 82
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=24.52 E-value=82 Score=24.00 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCC--eEeCCCCCC
Q 041817 32 AFKERVLHAIKLGYR--HFDTAASYP 55 (104)
Q Consensus 32 ~~~~~~~~a~~~G~~--~~DtA~~Yg 55 (104)
.+.+++...+++|++ |+||+-...
T Consensus 108 ~A~~li~ayv~AGF~KIHLD~Sm~ca 133 (424)
T PF08013_consen 108 KAKELIRAYVEAGFTKIHLDCSMDCA 133 (424)
T ss_dssp HHHHHHHHHHCTT--EEEE---C--C
T ss_pred HHHHHHHHHHHcCCceEeecCCCCCC
Confidence 467889999999997 678876554
No 83
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=24.03 E-value=79 Score=24.57 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCC
Q 041817 31 EAFKERVLHAIKLGYRHFDTAASY 54 (104)
Q Consensus 31 ~~~~~~~~~a~~~G~~~~DtA~~Y 54 (104)
.-+..-..+|+++|++.||||-.-
T Consensus 212 GlA~An~laAieAGad~vDtai~G 235 (499)
T PRK12330 212 GVTLVSLMKAIEAGVDVVDTAISS 235 (499)
T ss_pred CcHHHHHHHHHHcCCCEEEeeccc
Confidence 345556788999999999997543
No 84
>COG0432 Uncharacterized conserved protein [Function unknown]
Probab=23.76 E-value=15 Score=23.51 Aligned_cols=16 Identities=38% Similarity=0.625 Sum_probs=11.3
Q ss_pred cCCCCcccc----eeeecCcc
Q 041817 10 LGSTEKSIP----LVGFGTVE 26 (104)
Q Consensus 10 l~~~~~~ip----~ig~G~~~ 26 (104)
+++. ..+| ++.+||||
T Consensus 96 lG~S-~~iPv~~GrL~LGTWQ 115 (137)
T COG0432 96 LGPS-LTIPVINGRLVLGTWQ 115 (137)
T ss_pred cCce-EEEEEeCCeEceeccc
Confidence 4455 5555 57899999
No 85
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=23.74 E-value=72 Score=22.47 Aligned_cols=53 Identities=17% Similarity=0.099 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCeEeCCCCCC----------------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCC
Q 041817 33 FKERVLHAIKLGYRHFDTAASYP----------------SEQPLGEALAEALRLGLVKSRDELFITSKLWLT 88 (104)
Q Consensus 33 ~~~~~~~a~~~G~~~~DtA~~Yg----------------~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~~~~ 88 (104)
....+..++..|+|+||-=-..+ .-+.+-+.+++++.++ +.+-|++.-|-...
T Consensus 36 q~~~~~~qL~~G~R~lDir~~~~~~~~~~v~HG~~~~~~~f~dvl~~i~~fl~~~---p~e~vIlsl~~~~~ 104 (274)
T cd00137 36 QTEMYRQQLLSGCRCVDIRCWDGKPEEPIIYHGPTFLDIFLKEVIEAIAQFLKKN---PPETIIMSLKNEVD 104 (274)
T ss_pred cHHHHHHHHHcCCcEEEEEeecCCCCCeEEEECCcccCcCHHHHHHHHHHHHHHC---CCCeEEEEEEecCC
Confidence 34678889999999987621111 1233334445554444 56667777776443
No 86
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=23.68 E-value=1.3e+02 Score=21.88 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=21.4
Q ss_pred eecCcccCCHHHHHHHHHHHHHcCCCeEeCCCCC
Q 041817 21 GFGTVEYPLNEAFKERVLHAIKLGYRHFDTAASY 54 (104)
Q Consensus 21 g~G~~~~~~~~~~~~~~~~a~~~G~~~~DtA~~Y 54 (104)
|||...+++..+..+.++.+.+.|+..+-+++..
T Consensus 241 ~~G~Gn~p~~~~~~~~l~~~~~~Gi~VV~~Sr~~ 274 (335)
T PRK09461 241 SYGVGNAPQNPALLQELKEASERGIVVVNLTQCM 274 (335)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHCCCEEEEeCCCC
Confidence 3344333223566777888888888887777664
No 87
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=23.66 E-value=1.1e+02 Score=21.70 Aligned_cols=14 Identities=29% Similarity=-0.088 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHH
Q 041817 29 LNEAFKERVLHAIK 42 (104)
Q Consensus 29 ~~~~~~~~~~~a~~ 42 (104)
+.+++.++++.|.+
T Consensus 203 ~~eE~i~v~~~AR~ 216 (275)
T COG1856 203 PVEEAIKVVKYARK 216 (275)
T ss_pred CHHHHHHHHHHHHH
Confidence 34555555555554
No 88
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=23.65 E-value=97 Score=16.28 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCC
Q 041817 32 AFKERVLHAIKLGY 45 (104)
Q Consensus 32 ~~~~~~~~a~~~G~ 45 (104)
.-.+++..|++.||
T Consensus 4 ~Q~e~L~~A~~~GY 17 (53)
T PF04967_consen 4 RQREILKAAYELGY 17 (53)
T ss_pred HHHHHHHHHHHcCC
Confidence 34678999999996
No 89
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=23.56 E-value=2.1e+02 Score=18.69 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=13.5
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCC
Q 041817 56 SEQPLGEALAEALRLGLVKSRDELFITSKLWLT 88 (104)
Q Consensus 56 ~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~~~~ 88 (104)
+|+.+-+++++....|. +.+-|+.++.+.
T Consensus 132 d~~~v~~~~~~l~~~gv----~avAV~~~fS~~ 160 (176)
T PF05378_consen 132 DEDEVREALRELKDKGV----EAVAVSLLFSYR 160 (176)
T ss_pred CHHHHHHHHHHHHhCCC----CEEEEECccCCC
Confidence 45555555555432222 345555555443
No 90
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.54 E-value=1.9e+02 Score=17.94 Aligned_cols=21 Identities=10% Similarity=0.001 Sum_probs=10.0
Q ss_pred HHHHHHHHcCCCeEeCCCCCC
Q 041817 35 ERVLHAIKLGYRHFDTAASYP 55 (104)
Q Consensus 35 ~~~~~a~~~G~~~~DtA~~Yg 55 (104)
+.+..|.+.+...+=-+..++
T Consensus 44 ~~v~aa~e~~adii~iSsl~~ 64 (132)
T TIGR00640 44 EIARQAVEADVHVVGVSSLAG 64 (132)
T ss_pred HHHHHHHHcCCCEEEEcCchh
Confidence 344555555555544444443
No 91
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=23.31 E-value=72 Score=23.22 Aligned_cols=21 Identities=19% Similarity=0.048 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCCeEeCCC
Q 041817 32 AFKERVLHAIKLGYRHFDTAA 52 (104)
Q Consensus 32 ~~~~~~~~a~~~G~~~~DtA~ 52 (104)
....++++|++.|.+++|++.
T Consensus 79 ~~~~v~~~~i~~g~~yvD~~~ 99 (386)
T PF03435_consen 79 FGEPVARACIEAGVHYVDTSY 99 (386)
T ss_dssp GHHHHHHHHHHHT-EEEESS-
T ss_pred hhHHHHHHHHHhCCCeeccch
Confidence 667899999999999999654
No 92
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=23.26 E-value=2.7e+02 Score=21.28 Aligned_cols=48 Identities=15% Similarity=0.005 Sum_probs=28.6
Q ss_pred ceeeecCcccCCHHHHH--HHHHHHHHcCCCeEeC------CCCCC-ChHHHHHHHHHH
Q 041817 18 PLVGFGTVEYPLNEAFK--ERVLHAIKLGYRHFDT------AASYP-SEQPLGEALAEA 67 (104)
Q Consensus 18 p~ig~G~~~~~~~~~~~--~~~~~a~~~G~~~~Dt------A~~Yg-~E~~~g~~l~~~ 67 (104)
|++|+|.|. ++...+ .+-..|-+.|.++|-. +..+| +|+.+-+.++..
T Consensus 147 ~PlgllL~G--PPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A 203 (413)
T PLN00020 147 VPLILGIWG--GKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREA 203 (413)
T ss_pred CCeEEEeeC--CCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHH
Confidence 456777776 333322 2223344678887644 23445 899998888754
No 93
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=23.12 E-value=1.3e+02 Score=22.55 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=21.4
Q ss_pred ccceeeecCcccCCHHHHHHHHHHHHHcCCCeEeCCCCC
Q 041817 16 SIPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAASY 54 (104)
Q Consensus 16 ~ip~ig~G~~~~~~~~~~~~~~~~a~~~G~~~~DtA~~Y 54 (104)
..|+.-+|... + ..+..++..|+..|||+.-+
T Consensus 255 ~kPRyLmGvG~---P----~di~~~V~~GvD~FDcv~Pt 286 (372)
T PRK01008 255 ERPVHLLGIGD---L----PSIWATVGFGIDSFDSSYPT 286 (372)
T ss_pred CCCeEEecCCC---H----HHHHHHHHhCCCeeeeccch
Confidence 34555555543 2 23456899999999998655
No 94
>cd08586 PI-PLCc_BcPLC_like Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins. This subfamily corresponds to the catalytic domain present in Bacillus cereus phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and its sequence homologs found in bacteria and eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Their catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This family also includes some uncharacterized eukaryotic homologs, which
Probab=22.68 E-value=2.9e+02 Score=19.57 Aligned_cols=66 Identities=11% Similarity=0.042 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCCeEeCCCCCC----------------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCC-CCCChhhHHH
Q 041817 35 ERVLHAIKLGYRHFDTAASYP----------------SEQPLGEALAEALRLGLVKSRDELFITSKLWL-TDSYCGRVIP 97 (104)
Q Consensus 35 ~~~~~a~~~G~~~~DtA~~Yg----------------~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~~~-~~~~~~~v~~ 97 (104)
.-+..-++.|+|+||-=..+. .-+.+-..++..+..+ +.|-|++.-|-.. .....+.+.+
T Consensus 37 ~~i~~QL~~GiR~lDiR~~~~~~~~l~~~Hg~~~~~~~~~dvL~~i~~FL~~n---P~E~Vil~l~~e~~~~~~~~~f~~ 113 (279)
T cd08586 37 WSIAEQLNAGIRFLDIRLRLIDNNDLAIHHGPFYQGLTFGDVLNECYSFLDAN---PSETIIMSLKQEGSGDGNTDSFAE 113 (279)
T ss_pred CCHHHHHhcCCeEEEEEeeecCCCeEEEEccCccccCcHHHHHHHHHHHHHhC---CCcEEEEEEEecCCCCCchHHHHH
Confidence 345667888999999733331 1222223334444444 5666666666432 2224456666
Q ss_pred HHHhhh
Q 041817 98 GLQKTL 103 (104)
Q Consensus 98 ~~~~sL 103 (104)
.+++.+
T Consensus 114 ~~~~~~ 119 (279)
T cd08586 114 IFKEYL 119 (279)
T ss_pred HHHHHH
Confidence 666543
No 95
>COG2963 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=22.68 E-value=80 Score=18.79 Aligned_cols=41 Identities=17% Similarity=0.005 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCC--ChHHHHHHHHHHHh
Q 041817 29 LNEAFKERVLHAIKLGYRHFDTAASYP--SEQPLGEALAEALR 69 (104)
Q Consensus 29 ~~~~~~~~~~~a~~~G~~~~DtA~~Yg--~E~~~g~~l~~~~~ 69 (104)
+.+.-.+++..+++.|.+.-+.|..|| +...+-.|++++.+
T Consensus 9 s~EfK~~iv~~~~~~g~sv~~vAr~~gv~~~~~l~~W~~~~~~ 51 (116)
T COG2963 9 SPEFKLEAVALYLRGGDTVSEVAREFGIVSATQLYKWRIQLQK 51 (116)
T ss_pred CHHHHHHHHHHHHhcCccHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 355567899999999999989999999 77888888887743
No 96
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=22.63 E-value=1e+02 Score=19.92 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHcCCCeEeC
Q 041817 30 NEAFKERVLHAIKLGYRHFDT 50 (104)
Q Consensus 30 ~~~~~~~~~~a~~~G~~~~Dt 50 (104)
++.....+..|++.|++.|++
T Consensus 12 peNT~~af~~a~~~G~~~iE~ 32 (179)
T cd08555 12 QENTLEAFYRALDAGARGLEL 32 (179)
T ss_pred CccHHHHHHHHHHcCCCEEEE
Confidence 467778999999999998864
No 97
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=22.58 E-value=1.3e+02 Score=21.72 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCCC
Q 041817 32 AFKERVLHAIKLGYRHFDTAASYP 55 (104)
Q Consensus 32 ~~~~~~~~a~~~G~~~~DtA~~Yg 55 (104)
...+.++.+.+.|+..+-|++.+.
T Consensus 250 ~~~~~l~~a~~~gi~VV~~Sq~~~ 273 (323)
T cd00411 250 DLIDELEEAAERGVVVVNSTQCEE 273 (323)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCC
Confidence 566667777777777777766654
No 98
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=22.47 E-value=62 Score=22.08 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=13.6
Q ss_pred HHHHHHHHcCCCeEeCC
Q 041817 35 ERVLHAIKLGYRHFDTA 51 (104)
Q Consensus 35 ~~~~~a~~~G~~~~DtA 51 (104)
..+...++.|+|+||-=
T Consensus 41 ~~i~~QL~~GiR~~dlr 57 (271)
T cd08557 41 LSITDQLDAGVRYLDLR 57 (271)
T ss_pred CCHHHHHhcCceEEEEE
Confidence 35677889999999874
No 99
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=22.39 E-value=2e+02 Score=19.37 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCCC-ChHHHHHHHHHH
Q 041817 32 AFKERVLHAIKLGYRHFDTAASYP-SEQPLGEALAEA 67 (104)
Q Consensus 32 ~~~~~~~~a~~~G~~~~DtA~~Yg-~E~~~g~~l~~~ 67 (104)
...+.++.+-+.||+.++....+. .-..+.+.+++.
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~ 51 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAA 51 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHc
Confidence 356677777789999999865444 334455555543
No 100
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=22.10 E-value=3.2e+02 Score=19.98 Aligned_cols=27 Identities=15% Similarity=0.041 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCC
Q 041817 29 LNEAFKERVLHAIKLGYRHFDTAASYP 55 (104)
Q Consensus 29 ~~~~~~~~~~~a~~~G~~~~DtA~~Yg 55 (104)
+.+.+.+.+..+.+.|+..||.+..|.
T Consensus 78 p~~~s~~~~~~~~~~g~~VIDlS~~fR 104 (344)
T PLN02383 78 GGSISKKFGPIAVDKGAVVVDNSSAFR 104 (344)
T ss_pred CcHHHHHHHHHHHhCCCEEEECCchhh
Confidence 456778888888899999999997774
No 101
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=22.00 E-value=97 Score=19.90 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=34.3
Q ss_pred cccceeeecCcccCCHHHHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHH
Q 041817 15 KSIPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAASYPSEQPLGEALAE 66 (104)
Q Consensus 15 ~~ip~ig~G~~~~~~~~~~~~~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~ 66 (104)
..|-.+|+ -. .+...+..+.+.-.+.||+.|=.-+.|..++.+|+-.-.
T Consensus 17 K~IAvVG~--S~-~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~ 65 (140)
T COG1832 17 KTIAVVGA--SD-KPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYP 65 (140)
T ss_pred ceEEEEec--CC-CCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhh
Confidence 44444444 22 345567888888899999999888877777888865433
No 102
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=21.99 E-value=93 Score=23.77 Aligned_cols=22 Identities=36% Similarity=0.300 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCCeEeCCCC
Q 041817 32 AFKERVLHAIKLGYRHFDTAAS 53 (104)
Q Consensus 32 ~~~~~~~~a~~~G~~~~DtA~~ 53 (104)
-+..-..+|+++|++.||||-.
T Consensus 210 lA~AN~laAieaGad~vD~sv~ 231 (448)
T PRK12331 210 IAEMTYLKAIEAGADIIDTAIS 231 (448)
T ss_pred cHHHHHHHHHHcCCCEEEeecc
Confidence 4555667899999999999754
No 103
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=21.88 E-value=1.6e+02 Score=20.66 Aligned_cols=32 Identities=25% Similarity=0.073 Sum_probs=25.8
Q ss_pred eecCcccCCHHHHHHHHHHHHHcCCCeEeCCCC
Q 041817 21 GFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAS 53 (104)
Q Consensus 21 g~G~~~~~~~~~~~~~~~~a~~~G~~~~DtA~~ 53 (104)
.-|...| +.+...+++++|-..|-+++|-|..
T Consensus 18 IsGLnNF-d~~~V~~i~~AA~~ggAt~vDIAad 49 (242)
T PF04481_consen 18 ISGLNNF-DAESVAAIVKAAEIGGATFVDIAAD 49 (242)
T ss_pred eeCcccc-CHHHHHHHHHHHHccCCceEEecCC
Confidence 3455554 6788899999999999999999864
No 104
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=21.84 E-value=1.1e+02 Score=19.25 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=19.1
Q ss_pred cccceeeecCcccCCHHHHHHHHHHHHH
Q 041817 15 KSIPLVGFGTVEYPLNEAFKERVLHAIK 42 (104)
Q Consensus 15 ~~ip~ig~G~~~~~~~~~~~~~~~~a~~ 42 (104)
+.+|.||-|...+ |.+++.+++..+++
T Consensus 111 IAfPai~tG~~gf-P~~~aa~i~l~~v~ 137 (140)
T cd02905 111 IALCVISSEKRNY-PPEAAAHIALRTVR 137 (140)
T ss_pred EEECCcccCCCCC-CHHHHHHHHHHHHH
Confidence 6789999998886 56666666555543
No 105
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=21.81 E-value=1.2e+02 Score=20.88 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=22.0
Q ss_pred HHHHHHcCCCeEeCCCCCCChHHHHHHHHHHH
Q 041817 37 VLHAIKLGYRHFDTAASYPSEQPLGEALAEAL 68 (104)
Q Consensus 37 ~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~ 68 (104)
...|.+.|++.||. .+|.+|...-+.+.+.+
T Consensus 202 ~~~A~~~gi~li~~-gH~~sE~~~~~~la~~L 232 (249)
T TIGR00486 202 AHLARELGLNVIDA-GHYATERGGLRKLMEDL 232 (249)
T ss_pred HHHHHHCCCEEEEc-CcHHHHHHHHHHHHHHH
Confidence 45578899999985 56778876666666554
No 106
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=21.36 E-value=2.8e+02 Score=20.67 Aligned_cols=34 Identities=18% Similarity=-0.003 Sum_probs=24.8
Q ss_pred ceeeecCcccC------------CHHHHHHHHHHHHHcCCCeEeCC
Q 041817 18 PLVGFGTVEYP------------LNEAFKERVLHAIKLGYRHFDTA 51 (104)
Q Consensus 18 p~ig~G~~~~~------------~~~~~~~~~~~a~~~G~~~~DtA 51 (104)
.+.+||.|.++ +.....+.++.+-+.|+..+...
T Consensus 7 ~~f~~~~w~~~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~ 52 (382)
T TIGR02631 7 DRFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFH 52 (382)
T ss_pred CceEEEeeccCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEec
Confidence 36678877762 12346688899999999999875
No 107
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=20.72 E-value=3.5e+02 Score=19.90 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC-----------CCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEecc
Q 041817 29 LNEAFKERVLHAIKLGYRHFDT-----------AASYPSEQPLGEALAEALRLGLVKSRDELFITSKL 85 (104)
Q Consensus 29 ~~~~~~~~~~~a~~~G~~~~Dt-----------A~~Yg~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~ 85 (104)
+.+...+.++.+.+.|++.|-. +..|..+..+-++++.. .. .-.++.|.|=+
T Consensus 59 sid~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g~v~~air~i---K~--~~pdl~vi~DV 121 (322)
T PRK13384 59 PESALADEIERLYALGIRYVMPFGISHHKDAKGSDTWDDNGLLARMVRTI---KA--AVPEMMVIPDI 121 (322)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccCCCChHHHHHHHH---HH--HCCCeEEEeee
Confidence 4677889999999999998752 23333455677777765 21 23567777765
No 108
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=20.62 E-value=2.7e+02 Score=18.47 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCCC
Q 041817 30 NEAFKERVLHAIKLGYRHFDTAASYP 55 (104)
Q Consensus 30 ~~~~~~~~~~a~~~G~~~~DtA~~Yg 55 (104)
++...-+++.|-+.|+.+|=.|..||
T Consensus 13 ~~tle~a~erA~elgik~~vVAS~tG 38 (186)
T COG1751 13 DETLEIAVERAKELGIKHIVVASSTG 38 (186)
T ss_pred HHHHHHHHHHHHhcCcceEEEEeccc
Confidence 34455677788889999999999998
No 109
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=20.56 E-value=2.4e+02 Score=17.78 Aligned_cols=56 Identities=16% Similarity=-0.010 Sum_probs=35.4
Q ss_pred HHHHcCCCeEeCCCCCCChHHHHHHHHHHHhcCCCCCCCcEEEEeccC---CCCCChhhHHHH
Q 041817 39 HAIKLGYRHFDTAASYPSEQPLGEALAEALRLGLVKSRDELFITSKLW---LTDSYCGRVIPG 98 (104)
Q Consensus 39 ~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~~---~~~~~~~~v~~~ 98 (104)
..-+.|+...+.....-.++.+-+++++..+ + .+.|++|+|=.- ..|..++.+++.
T Consensus 28 ~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~-~---~~~DlVittGG~s~g~~D~t~~al~~~ 86 (152)
T cd00886 28 LLEEAGHEVVAYEIVPDDKDEIREALIEWAD-E---DGVDLILTTGGTGLAPRDVTPEATRPL 86 (152)
T ss_pred HHHHcCCeeeeEEEcCCCHHHHHHHHHHHHh-c---CCCCEEEECCCcCCCCCcCcHHHHHHH
Confidence 3456798877766666677888888887532 1 267899998432 234445545443
No 110
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=20.55 E-value=95 Score=19.27 Aligned_cols=26 Identities=15% Similarity=0.451 Sum_probs=17.0
Q ss_pred cccceeeecCcccCCHHHHHHHHHHHH
Q 041817 15 KSIPLVGFGTVEYPLNEAFKERVLHAI 41 (104)
Q Consensus 15 ~~ip~ig~G~~~~~~~~~~~~~~~~a~ 41 (104)
+.+|.||-|...+ +.+++.+++..++
T Consensus 109 IAfP~igtG~~g~-p~~~~A~~~~~~i 134 (137)
T cd02903 109 ISFPAIGTGNLGF-PKDVVAKIMFDEV 134 (137)
T ss_pred EEECCCcCcCCCC-CHHHHHHHHHHHH
Confidence 6788888888886 4555554444443
No 111
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=20.33 E-value=2.7e+02 Score=18.38 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHH
Q 041817 32 AFKERVLHAIKLGYRHFDTAASYPSEQPLGEALAEA 67 (104)
Q Consensus 32 ~~~~~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~ 67 (104)
...+.+..+++.|+++|=|...-|-|..-++++.+.
T Consensus 30 ~L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~L 65 (177)
T PF06908_consen 30 ALKKQIIELIEEGVRWFITGGALGVDLWAAEVVLEL 65 (177)
T ss_dssp HHHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHH
Confidence 345667778889999999999899888888877654
No 112
>PHA00965 tail protein
Probab=20.30 E-value=1.1e+02 Score=24.12 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=23.0
Q ss_pred cCcccCC-HHHHHHHHHHHHHcCCCeEeCCC
Q 041817 23 GTVEYPL-NEAFKERVLHAIKLGYRHFDTAA 52 (104)
Q Consensus 23 G~~~~~~-~~~~~~~~~~a~~~G~~~~DtA~ 52 (104)
|||.+++ +...-+.+++-++.|+|+|..-+
T Consensus 543 g~~t~~nid~~~m~~lrAi~esGV~lWH~~~ 573 (588)
T PHA00965 543 GTYTLPNIDPMLMEMLRAILESGVRLWHNDG 573 (588)
T ss_pred cceecCCCCHHHHHHHHHHHhcCcEEEecCC
Confidence 6776643 45667899999999999997644
No 113
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=20.25 E-value=1e+02 Score=23.66 Aligned_cols=22 Identities=36% Similarity=0.329 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCCeEeCCCC
Q 041817 32 AFKERVLHAIKLGYRHFDTAAS 53 (104)
Q Consensus 32 ~~~~~~~~a~~~G~~~~DtA~~ 53 (104)
-+..-..+|+++|++.||||-.
T Consensus 209 lA~AN~laAieaGad~vD~sv~ 230 (467)
T PRK14041 209 LASLAYLAAVEAGADMFDTAIS 230 (467)
T ss_pred cHHHHHHHHHHhCCCEEEeecc
Confidence 4555667899999999999755
No 114
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.03 E-value=3.2e+02 Score=21.19 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=30.2
Q ss_pred HHHHHHHcCCCeEeCCCCCC-ChHHHHHHHHHHHhcCCCCCCCcEEEEeccC
Q 041817 36 RVLHAIKLGYRHFDTAASYP-SEQPLGEALAEALRLGLVKSRDELFITSKLW 86 (104)
Q Consensus 36 ~~~~a~~~G~~~~DtA~~Yg-~E~~~g~~l~~~~~~~~~~~r~~~~i~tK~~ 86 (104)
.+....++|+-.=|--+.-. +|+.+|+.+++. ..-|+||.-|++
T Consensus 383 ~v~mLreaGvE~g~~dDlsTe~Ek~LG~lV~ek-------y~tdfyildkyP 427 (533)
T KOG0556|consen 383 GVAMLREAGVEMGDEDDLSTESEKKLGQLVREK-------YDTDFYILDKYP 427 (533)
T ss_pred HHHHHHHcCcccCCccccCChhHHHHHHHHHHH-------hCCcEEEEccCc
Confidence 34444455775444444333 899999999975 567899999984
No 115
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=20.01 E-value=61 Score=22.24 Aligned_cols=33 Identities=36% Similarity=0.343 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCCeEeCCCCCCChHHHHHHHHHH
Q 041817 34 KERVLHAIKLGYRHFDTAASYPSEQPLGEALAEA 67 (104)
Q Consensus 34 ~~~~~~a~~~G~~~~DtA~~Yg~E~~~g~~l~~~ 67 (104)
......|.+.|++.||. .||.+|...-+.+.+.
T Consensus 202 ~h~~~~a~~~g~~lI~~-gH~~sE~~~~~~l~~~ 234 (241)
T PF01784_consen 202 YHDAQDAKENGINLIDA-GHYASERPGMEALAEW 234 (241)
T ss_dssp HHHHHHHHHCTSEEEE---HHHHGGHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEc-CCHHHHHHHHHHHHHH
Confidence 34556677888888874 4676776655555544
Done!