Query 041818
Match_columns 173
No_of_seqs 138 out of 1218
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 10:57:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.5 1.4E-14 3E-19 93.3 6.4 54 5-58 3-59 (60)
2 PF00010 HLH: Helix-loop-helix 99.5 1.5E-14 3.3E-19 92.1 5.7 49 7-55 2-55 (55)
3 smart00353 HLH helix loop heli 99.5 5.8E-14 1.3E-18 88.5 6.2 49 11-59 1-52 (53)
4 cd04897 ACT_ACR_3 ACT domain-c 99.3 1.3E-11 2.7E-16 83.6 9.5 68 92-159 2-74 (75)
5 cd04896 ACT_ACR-like_3 ACT dom 99.3 6E-11 1.3E-15 80.3 9.3 67 93-160 2-75 (75)
6 cd04895 ACT_ACR_1 ACT domain-c 99.3 1E-10 2.3E-15 78.6 10.0 67 92-158 2-69 (72)
7 KOG1318 Helix loop helix trans 99.2 3.8E-11 8.2E-16 103.7 7.1 59 2-60 228-291 (411)
8 cd04927 ACT_ACR-like_2 Second 99.1 1.6E-09 3.4E-14 73.4 9.5 67 92-158 1-72 (76)
9 KOG1319 bHLHZip transcription 99.1 2.6E-10 5.7E-15 88.6 5.5 62 3-64 59-127 (229)
10 cd04900 ACT_UUR-like_1 ACT dom 99.0 8E-09 1.7E-13 69.1 9.5 65 92-156 2-72 (73)
11 cd04925 ACT_ACR_2 ACT domain-c 98.9 4.6E-08 9.9E-13 65.7 9.9 66 93-158 2-73 (74)
12 KOG4304 Transcriptional repres 98.8 6.4E-09 1.4E-13 85.3 4.4 58 3-60 29-94 (250)
13 cd04928 ACT_TyrKc Uncharacteri 98.7 4.2E-07 9.2E-12 60.4 9.7 64 93-157 3-67 (68)
14 cd04926 ACT_ACR_4 C-terminal 98.6 9.2E-07 2E-11 59.0 9.8 68 92-159 2-69 (72)
15 PRK05007 PII uridylyl-transfer 98.6 3.6E-07 7.8E-12 86.8 10.2 73 87-159 804-880 (884)
16 cd04899 ACT_ACR-UUR-like_2 C-t 98.6 9E-07 1.9E-11 57.9 9.2 64 93-156 2-69 (70)
17 PRK01759 glnD PII uridylyl-tra 98.5 1E-06 2.3E-11 83.4 12.4 71 87-157 779-853 (854)
18 KOG3561 Aryl-hydrocarbon recep 98.5 1.3E-07 2.8E-12 87.9 5.3 52 6-57 20-75 (803)
19 PRK00275 glnD PII uridylyl-tra 98.4 1.9E-06 4.1E-11 82.1 11.2 74 89-162 812-890 (895)
20 KOG0561 bHLH transcription fac 98.4 4E-07 8.6E-12 75.7 4.5 59 3-61 57-117 (373)
21 PRK04374 PII uridylyl-transfer 98.3 4.3E-06 9.2E-11 79.4 11.3 72 87-158 792-867 (869)
22 PRK05092 PII uridylyl-transfer 98.3 8.4E-06 1.8E-10 78.0 12.0 74 88-161 840-918 (931)
23 cd04873 ACT_UUR-ACR-like ACT d 98.3 1.6E-05 3.5E-10 51.5 9.3 63 93-155 2-68 (70)
24 KOG2483 Upstream transcription 98.2 2.3E-06 5.1E-11 69.4 6.3 58 5-62 58-118 (232)
25 PRK03381 PII uridylyl-transfer 98.2 8.3E-06 1.8E-10 76.6 10.0 68 89-157 705-772 (774)
26 COG2844 GlnD UTP:GlnB (protein 98.2 4.4E-06 9.4E-11 77.7 7.9 75 89-163 789-863 (867)
27 PRK03059 PII uridylyl-transfer 98.2 1.2E-05 2.6E-10 76.4 10.0 71 88-158 783-855 (856)
28 TIGR01693 UTase_glnD [Protein- 98.1 2.5E-05 5.5E-10 74.0 11.6 73 89-161 666-744 (850)
29 PRK01759 glnD PII uridylyl-tra 98.0 4.3E-05 9.2E-10 72.6 11.0 77 88-164 674-755 (854)
30 PRK05007 PII uridylyl-transfer 98.0 7.1E-05 1.5E-09 71.4 11.5 73 88-160 698-775 (884)
31 PF13740 ACT_6: ACT domain; PD 98.0 9.8E-05 2.1E-09 49.6 9.1 67 91-159 2-68 (76)
32 TIGR01693 UTase_glnD [Protein- 98.0 3.8E-05 8.3E-10 72.8 9.7 70 88-157 776-849 (850)
33 PF01842 ACT: ACT domain; Int 97.9 0.00024 5.1E-09 45.3 10.1 62 92-156 1-64 (66)
34 PRK03381 PII uridylyl-transfer 97.9 7.5E-05 1.6E-09 70.3 10.7 72 89-160 597-669 (774)
35 KOG2588 Predicted DNA-binding 97.9 5.5E-06 1.2E-10 77.7 2.2 57 6-62 276-333 (953)
36 PLN03217 transcription factor 97.8 5.6E-05 1.2E-09 51.8 5.7 48 19-66 20-73 (93)
37 PRK03059 PII uridylyl-transfer 97.8 0.00021 4.6E-09 68.0 10.7 73 89-161 676-753 (856)
38 PRK00275 glnD PII uridylyl-tra 97.7 0.00025 5.5E-09 67.8 10.6 73 89-161 702-781 (895)
39 KOG3960 Myogenic helix-loop-he 97.7 0.00011 2.5E-09 59.8 7.0 60 7-66 119-180 (284)
40 KOG4029 Transcription factor H 97.7 3.3E-05 7.2E-10 62.5 3.9 58 6-63 109-170 (228)
41 PRK04374 PII uridylyl-transfer 97.7 0.00061 1.3E-08 65.0 11.9 73 88-160 687-762 (869)
42 cd04893 ACT_GcvR_1 ACT domains 97.6 0.00083 1.8E-08 45.2 9.4 66 92-159 2-67 (77)
43 PRK00194 hypothetical protein; 97.6 0.0004 8.6E-09 47.8 7.9 69 91-159 3-71 (90)
44 cd04872 ACT_1ZPV ACT domain pr 97.6 0.00045 9.7E-09 47.5 7.7 68 92-159 2-69 (88)
45 cd04870 ACT_PSP_1 CT domains f 97.6 0.00085 1.9E-08 44.7 8.7 65 94-159 2-66 (75)
46 PRK05092 PII uridylyl-transfer 97.6 0.0008 1.7E-08 64.6 11.3 71 89-159 730-806 (931)
47 cd04894 ACT_ACR-like_1 ACT dom 97.5 0.0006 1.3E-08 44.4 6.9 65 93-157 2-68 (69)
48 cd04869 ACT_GcvR_2 ACT domains 97.5 0.0018 3.9E-08 43.3 9.3 65 94-159 2-72 (81)
49 cd04875 ACT_F4HF-DF N-terminal 97.5 0.0021 4.5E-08 42.6 9.2 66 94-159 2-69 (74)
50 PF13291 ACT_4: ACT domain; PD 97.4 0.0017 3.6E-08 43.6 7.8 63 91-154 6-70 (80)
51 cd04888 ACT_PheB-BS C-terminal 97.0 0.0049 1.1E-07 40.5 7.4 65 92-156 1-66 (76)
52 cd04887 ACT_MalLac-Enz ACT_Mal 97.0 0.0095 2.1E-07 39.0 8.5 62 94-156 2-64 (74)
53 cd04886 ACT_ThrD-II-like C-ter 97.0 0.0084 1.8E-07 38.3 7.9 61 94-155 1-66 (73)
54 PRK04435 hypothetical protein; 96.6 0.021 4.6E-07 43.2 8.6 70 87-156 65-135 (147)
55 COG2844 GlnD UTP:GlnB (protein 96.5 0.018 3.8E-07 54.3 9.5 74 90-163 683-761 (867)
56 cd04877 ACT_TyrR N-terminal AC 96.4 0.02 4.3E-07 37.8 6.8 37 93-130 2-38 (74)
57 PRK06027 purU formyltetrahydro 96.3 0.039 8.4E-07 46.3 9.5 69 91-159 6-76 (286)
58 cd04874 ACT_Af1403 N-terminal 96.2 0.059 1.3E-06 34.3 8.2 59 93-154 2-61 (72)
59 PRK08577 hypothetical protein; 96.1 0.094 2E-06 38.9 9.7 68 89-156 54-123 (136)
60 cd04876 ACT_RelA-SpoT ACT dom 96.1 0.051 1.1E-06 33.4 7.2 60 94-154 1-61 (71)
61 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.0 0.043 9.4E-07 35.4 6.8 63 92-155 1-65 (79)
62 TIGR00655 PurU formyltetrahydr 95.9 0.085 1.8E-06 44.1 9.7 63 93-155 2-66 (280)
63 cd04878 ACT_AHAS N-terminal AC 95.9 0.099 2.1E-06 33.0 8.1 61 93-155 2-64 (72)
64 cd04880 ACT_AAAH-PDT-like ACT 95.8 0.12 2.7E-06 33.9 8.4 62 95-156 3-67 (75)
65 PRK11589 gcvR glycine cleavage 95.8 0.041 8.8E-07 43.6 6.8 66 90-157 7-72 (190)
66 cd04879 ACT_3PGDH-like ACT_3PG 95.8 0.088 1.9E-06 33.1 7.4 59 94-156 2-62 (71)
67 cd04905 ACT_CM-PDT C-terminal 95.7 0.18 3.9E-06 33.6 9.1 62 93-155 3-65 (80)
68 cd04903 ACT_LSD C-terminal ACT 95.7 0.091 2E-06 33.2 7.2 58 94-155 2-61 (71)
69 cd04884 ACT_CBS C-terminal ACT 95.4 0.13 2.8E-06 33.6 7.4 61 94-155 2-65 (72)
70 cd02116 ACT ACT domains are co 95.4 0.14 3.1E-06 29.6 7.0 35 94-128 1-35 (60)
71 PRK13010 purU formyltetrahydro 95.4 0.1 2.3E-06 43.8 8.5 69 91-159 9-80 (289)
72 PRK00227 glnD PII uridylyl-tra 95.4 0.18 3.9E-06 47.3 10.6 67 92-159 547-615 (693)
73 cd04882 ACT_Bt0572_2 C-termina 95.2 0.17 3.7E-06 31.7 7.2 45 94-138 2-48 (65)
74 TIGR00119 acolac_sm acetolacta 95.2 0.13 2.8E-06 39.5 7.6 64 93-158 3-68 (157)
75 PRK11895 ilvH acetolactate syn 95.2 0.13 2.9E-06 39.6 7.7 64 93-158 4-69 (161)
76 PRK06737 acetolactate synthase 95.1 0.13 2.9E-06 34.7 6.8 65 92-158 3-69 (76)
77 PRK13011 formyltetrahydrofolat 95.1 0.21 4.5E-06 41.9 9.3 68 91-159 7-76 (286)
78 KOG4447 Transcription factor T 95.1 0.014 3.1E-07 44.4 2.0 54 6-59 78-133 (173)
79 cd04909 ACT_PDH-BS C-terminal 95.0 0.33 7.1E-06 31.1 8.2 46 93-138 3-50 (69)
80 KOG3910 Helix loop helix trans 95.0 0.033 7.1E-07 49.8 4.2 56 6-61 526-585 (632)
81 cd04908 ACT_Bt0572_1 N-termina 94.8 0.16 3.4E-06 32.7 6.3 45 93-139 3-47 (66)
82 COG4492 PheB ACT domain-contai 94.6 0.25 5.5E-06 37.0 7.6 68 89-156 70-138 (150)
83 PRK11152 ilvM acetolactate syn 94.6 0.33 7.1E-06 32.8 7.6 64 92-158 4-69 (76)
84 PF13710 ACT_5: ACT domain; PD 94.5 0.17 3.6E-06 32.8 5.8 57 100-158 1-59 (63)
85 COG3830 ACT domain-containing 94.5 0.086 1.9E-06 36.8 4.6 70 91-160 3-72 (90)
86 KOG4395 Transcription factor A 94.5 0.093 2E-06 43.1 5.4 58 3-60 171-231 (285)
87 PRK07334 threonine dehydratase 94.4 0.35 7.5E-06 42.3 9.4 66 89-155 324-394 (403)
88 cd04889 ACT_PDH-BS-like C-term 94.4 0.23 5E-06 30.6 6.2 46 94-139 1-47 (56)
89 cd04931 ACT_PAH ACT domain of 94.3 0.61 1.3E-05 32.4 8.6 63 92-156 15-78 (90)
90 KOG3898 Transcription factor N 94.0 0.033 7.2E-07 46.0 2.0 54 4-57 70-126 (254)
91 PRK13562 acetolactate synthase 94.0 0.3 6.4E-06 33.7 6.4 66 93-158 4-70 (84)
92 COG0788 PurU Formyltetrahydrof 94.0 0.41 9E-06 39.9 8.3 69 91-159 7-77 (287)
93 KOG3558 Hypoxia-inducible fact 94.0 0.055 1.2E-06 50.1 3.5 50 4-53 44-97 (768)
94 CHL00100 ilvH acetohydroxyacid 93.9 0.34 7.3E-06 37.9 7.4 65 93-159 4-70 (174)
95 cd04883 ACT_AcuB C-terminal AC 93.9 0.86 1.9E-05 29.2 8.3 60 92-155 2-63 (72)
96 cd04901 ACT_3PGDH C-terminal A 93.4 0.097 2.1E-06 33.4 3.1 58 94-155 2-59 (69)
97 cd04885 ACT_ThrD-I Tandem C-te 93.3 0.67 1.5E-05 29.9 7.1 59 95-155 2-61 (68)
98 KOG3560 Aryl-hydrocarbon recep 93.3 0.067 1.4E-06 48.4 2.7 40 14-53 33-76 (712)
99 PRK00227 glnD PII uridylyl-tra 93.0 0.17 3.6E-06 47.5 5.1 60 92-158 632-691 (693)
100 PRK08178 acetolactate synthase 93.0 0.87 1.9E-05 32.2 7.6 68 90-158 7-74 (96)
101 cd04904 ACT_AAAH ACT domain of 92.7 0.91 2E-05 30.0 7.1 59 95-156 4-63 (74)
102 KOG3559 Transcriptional regula 92.6 0.12 2.7E-06 45.3 3.4 44 12-55 7-54 (598)
103 PRK11589 gcvR glycine cleavage 92.3 1.2 2.5E-05 35.3 8.3 68 92-160 96-169 (190)
104 cd04902 ACT_3PGDH-xct C-termin 91.6 0.69 1.5E-05 29.6 5.4 57 95-155 3-61 (73)
105 PRK10872 relA (p)ppGpp synthet 91.5 1.1 2.3E-05 42.5 8.4 65 91-156 666-732 (743)
106 cd04929 ACT_TPH ACT domain of 91.0 1.8 3.9E-05 28.8 7.1 58 96-156 5-63 (74)
107 COG3978 Acetolactate synthase 90.6 2.6 5.6E-05 28.8 7.4 65 92-159 4-70 (86)
108 cd04906 ACT_ThrD-I_1 First of 89.2 5 0.00011 27.0 8.3 62 92-155 2-64 (85)
109 TIGR00691 spoT_relA (p)ppGpp s 89.2 2.1 4.6E-05 40.2 8.3 63 91-154 610-673 (683)
110 PRK11092 bifunctional (p)ppGpp 89.0 2 4.4E-05 40.5 8.0 64 91-155 626-690 (702)
111 PRK11899 prephenate dehydratas 88.9 3.7 7.9E-05 34.4 8.8 65 91-156 194-259 (279)
112 PRK06382 threonine dehydratase 87.8 4.1 9E-05 35.6 8.8 66 89-155 328-398 (406)
113 cd04930 ACT_TH ACT domain of t 87.5 4.5 9.7E-05 29.3 7.5 62 92-156 42-104 (115)
114 TIGR01127 ilvA_1Cterm threonin 86.3 6.9 0.00015 33.7 9.3 67 88-155 302-373 (380)
115 COG0077 PheA Prephenate dehydr 85.2 6.9 0.00015 32.9 8.4 65 91-156 194-259 (279)
116 PRK08198 threonine dehydratase 84.6 9 0.00019 33.3 9.3 67 88-155 324-395 (404)
117 cd04892 ACT_AK-like_2 ACT doma 84.4 5.6 0.00012 24.0 6.0 46 93-140 2-50 (65)
118 COG2716 GcvR Glycine cleavage 83.4 1.1 2.4E-05 34.9 2.7 64 90-155 4-67 (176)
119 cd04890 ACT_AK-like_1 ACT doma 82.1 9 0.0002 23.7 6.3 37 100-140 12-48 (62)
120 COG0317 SpoT Guanosine polypho 81.6 7.1 0.00015 36.9 7.7 65 90-155 626-691 (701)
121 PRK10622 pheA bifunctional cho 80.6 13 0.00028 32.6 8.7 64 92-156 298-362 (386)
122 cd04922 ACT_AKi-HSDH-ThrA_2 AC 80.4 11 0.00024 23.3 6.3 46 93-140 3-51 (66)
123 PRK08526 threonine dehydratase 80.4 14 0.00031 32.3 9.0 67 88-155 323-394 (403)
124 PF05088 Bac_GDH: Bacterial NA 80.0 15 0.00033 37.8 9.9 71 89-159 487-567 (1528)
125 cd04898 ACT_ACR-like_4 ACT dom 79.8 0.61 1.3E-05 31.5 0.1 41 94-134 3-45 (77)
126 PRK11898 prephenate dehydratas 78.7 13 0.00028 31.0 7.8 64 92-156 197-262 (283)
127 cd04932 ACT_AKiii-LysC-EC_1 AC 74.0 23 0.00049 23.4 8.0 62 93-159 3-67 (75)
128 PLN02317 arogenate dehydratase 73.9 30 0.00064 30.4 8.9 64 92-156 284-362 (382)
129 cd04937 ACT_AKi-DapG-BS_2 ACT 70.5 24 0.00051 22.1 6.0 28 93-120 3-33 (64)
130 cd04935 ACT_AKiii-DAPDC_1 ACT 70.2 28 0.00061 22.9 6.4 53 99-155 12-67 (75)
131 COG0440 IlvH Acetolactate synt 70.1 19 0.0004 27.9 6.1 68 93-160 6-73 (163)
132 cd04919 ACT_AK-Hom3_2 ACT doma 68.3 19 0.00041 22.3 5.1 27 100-126 13-39 (66)
133 KOG3582 Mlx interactors and re 68.2 1.1 2.5E-05 41.8 -1.0 57 6-62 651-712 (856)
134 cd04912 ACT_AKiii-LysC-EC-like 66.5 33 0.00071 22.3 7.1 31 93-123 3-36 (75)
135 PF13840 ACT_7: ACT domain ; P 64.6 8.5 0.00019 24.6 2.9 34 90-123 5-42 (65)
136 PRK14645 hypothetical protein; 64.5 52 0.0011 25.1 7.6 53 106-159 13-70 (154)
137 COG2716 GcvR Glycine cleavage 63.9 28 0.00062 27.2 6.0 71 89-159 90-165 (176)
138 cd04921 ACT_AKi-HSDH-ThrA-like 63.4 37 0.00081 21.8 6.6 64 93-158 3-69 (80)
139 COG4747 ACT domain-containing 62.9 33 0.00073 25.4 5.9 38 93-130 5-42 (142)
140 PRK14639 hypothetical protein; 62.9 62 0.0013 24.2 7.8 52 108-159 3-56 (140)
141 KOG4447 Transcription factor T 62.8 4.3 9.4E-05 31.1 1.3 23 13-35 29-51 (173)
142 PRK14638 hypothetical protein; 62.4 51 0.0011 24.9 7.2 51 109-159 15-68 (150)
143 PRK14630 hypothetical protein; 62.0 51 0.0011 24.7 7.1 54 106-160 12-68 (143)
144 PRK15385 magnesium transport p 61.8 87 0.0019 25.5 9.0 39 90-128 141-181 (225)
145 cd04918 ACT_AK1-AT_2 ACT domai 60.9 39 0.00085 21.2 6.2 30 100-129 12-41 (65)
146 PRK14640 hypothetical protein; 60.7 57 0.0012 24.7 7.2 52 108-159 12-65 (152)
147 PRK14637 hypothetical protein; 60.7 70 0.0015 24.2 7.7 60 99-159 5-67 (151)
148 TIGR02079 THD1 threonine dehyd 60.2 77 0.0017 27.8 8.9 38 88-125 322-359 (409)
149 PRK12483 threonine dehydratase 59.3 83 0.0018 28.8 9.1 37 88-126 342-378 (521)
150 COG2061 ACT-domain-containing 58.8 59 0.0013 25.1 6.8 50 91-140 5-57 (170)
151 PF09383 NIL: NIL domain; Int 58.8 47 0.001 21.5 7.1 49 92-141 5-54 (76)
152 cd07943 DRE_TIM_HOA 4-hydroxy- 58.5 37 0.00081 27.7 6.3 53 92-155 186-239 (263)
153 TIGR01270 Trp_5_monoox tryptop 58.5 44 0.00095 30.1 7.0 50 91-140 31-82 (464)
154 TIGR01124 ilvA_2Cterm threonin 58.3 80 0.0017 28.6 8.9 65 88-155 322-387 (499)
155 cd07937 DRE_TIM_PC_TC_5S Pyruv 57.9 32 0.00069 28.4 5.9 53 92-155 193-246 (275)
156 TIGR01268 Phe4hydrox_tetr phen 57.7 57 0.0012 29.2 7.6 66 91-156 16-83 (436)
157 cd04915 ACT_AK-Ectoine_2 ACT d 57.4 47 0.001 21.1 5.7 27 101-127 14-40 (66)
158 PRK09224 threonine dehydratase 56.3 1.1E+02 0.0024 27.7 9.4 65 89-155 326-391 (504)
159 KOG3582 Mlx interactors and re 56.3 3.3 7.2E-05 38.9 -0.3 55 6-63 787-846 (856)
160 cd04916 ACT_AKiii-YclM-BS_2 AC 56.1 44 0.00096 20.4 6.2 32 93-124 3-37 (66)
161 PRK14633 hypothetical protein; 55.9 84 0.0018 23.7 7.4 51 108-159 10-62 (150)
162 PRK14632 hypothetical protein; 55.8 72 0.0016 24.7 7.1 49 110-159 16-66 (172)
163 KOG2663 Acetolactate synthase, 55.2 27 0.00059 29.2 4.8 65 91-157 77-143 (309)
164 PRK00907 hypothetical protein; 54.8 70 0.0015 22.3 6.4 65 90-155 16-84 (92)
165 PRK14646 hypothetical protein; 54.7 93 0.002 23.6 8.0 54 106-159 11-68 (155)
166 cd04868 ACT_AK-like ACT domain 54.2 41 0.00089 19.4 5.9 25 101-125 13-37 (60)
167 PRK08639 threonine dehydratase 53.7 1.1E+02 0.0024 26.8 8.8 38 88-125 333-370 (420)
168 cd07940 DRE_TIM_IPMS 2-isoprop 52.8 65 0.0014 26.3 6.9 54 92-156 190-244 (268)
169 PRK14647 hypothetical protein; 52.8 1E+02 0.0022 23.5 8.3 52 108-159 14-67 (159)
170 COG1707 ACT domain-containing 52.0 79 0.0017 24.9 6.7 59 93-154 4-64 (218)
171 PRK06349 homoserine dehydrogen 51.8 66 0.0014 28.4 7.1 33 91-123 348-380 (426)
172 cd04924 ACT_AK-Arch_2 ACT doma 51.7 53 0.0011 19.9 6.2 51 100-156 13-63 (66)
173 cd04936 ACT_AKii-LysC-BS-like_ 51.4 44 0.00096 20.0 4.5 25 99-123 11-35 (63)
174 cd04923 ACT_AK-LysC-DapG-like_ 50.9 45 0.00097 20.0 4.4 24 100-123 12-35 (63)
175 COG3074 Uncharacterized protei 50.3 27 0.00059 23.2 3.4 23 44-66 13-35 (79)
176 PRK14643 hypothetical protein; 49.5 1.2E+02 0.0026 23.3 7.4 52 108-159 15-72 (164)
177 cd04920 ACT_AKiii-DAPDC_2 ACT 49.5 47 0.001 20.8 4.4 22 100-121 12-33 (63)
178 PF02344 Myc-LZ: Myc leucine z 48.9 41 0.00088 18.8 3.4 22 9-30 8-29 (32)
179 cd07944 DRE_TIM_HOA_like 4-hyd 48.8 60 0.0013 26.7 6.1 55 91-156 183-238 (266)
180 PRK15422 septal ring assembly 48.3 28 0.00061 23.6 3.3 23 44-66 13-35 (79)
181 PRK14644 hypothetical protein; 48.1 1.1E+02 0.0024 22.8 6.8 48 110-159 6-54 (136)
182 COG4747 ACT domain-containing 47.2 1.2E+02 0.0025 22.6 6.6 42 93-135 71-114 (142)
183 PRK11790 D-3-phosphoglycerate 46.9 35 0.00076 30.0 4.6 62 90-155 337-398 (409)
184 PF06005 DUF904: Protein of un 46.8 31 0.00068 22.9 3.3 23 44-66 13-35 (72)
185 PF05088 Bac_GDH: Bacterial NA 46.5 1.3E+02 0.0028 31.3 8.9 34 89-122 15-48 (1528)
186 PRK10820 DNA-binding transcrip 46.5 35 0.00076 30.9 4.7 36 93-128 2-37 (520)
187 cd07939 DRE_TIM_NifV Streptomy 46.0 76 0.0016 25.8 6.2 54 92-156 183-237 (259)
188 COG0216 PrfA Protein chain rel 45.9 2E+02 0.0044 25.0 10.0 89 40-140 74-172 (363)
189 cd04933 ACT_AK1-AT_1 ACT domai 45.6 90 0.0019 20.8 7.4 38 99-140 12-49 (78)
190 cd04913 ACT_AKii-LysC-BS-like_ 45.4 71 0.0015 19.6 5.6 25 98-122 9-33 (75)
191 TIGR02090 LEU1_arch isopropylm 44.3 88 0.0019 27.0 6.6 38 92-130 185-223 (363)
192 PRK08818 prephenate dehydrogen 44.1 1.4E+02 0.0031 25.9 7.9 48 92-140 296-344 (370)
193 cd04871 ACT_PSP_2 ACT domains 41.2 40 0.00086 22.7 3.3 62 94-159 2-75 (84)
194 PLN02550 threonine dehydratase 38.9 1.9E+02 0.0041 27.0 8.2 36 89-126 415-450 (591)
195 cd04934 ACT_AK-Hom3_1 CT domai 38.6 1.1E+02 0.0024 19.9 8.2 52 100-155 13-65 (73)
196 PRK14042 pyruvate carboxylase 36.3 79 0.0017 29.4 5.3 39 92-131 198-237 (596)
197 cd07947 DRE_TIM_Re_CS Clostrid 35.7 1.2E+02 0.0027 25.1 6.0 54 92-156 204-258 (279)
198 PF00585 Thr_dehydrat_C: C-ter 34.7 41 0.00088 23.1 2.5 51 89-140 8-61 (91)
199 PF02120 Flg_hook: Flagellar h 34.2 1.3E+02 0.0029 19.5 5.0 54 74-128 21-80 (85)
200 PF08544 GHMP_kinases_C: GHMP 33.0 1.3E+02 0.0029 19.2 4.8 46 105-157 36-83 (85)
201 PRK00092 ribosome maturation p 32.0 2.2E+02 0.0047 21.3 7.6 52 108-159 13-66 (154)
202 PRK14634 hypothetical protein; 31.8 2.3E+02 0.0049 21.5 6.9 50 109-159 14-68 (155)
203 PRK14631 hypothetical protein; 31.3 2.5E+02 0.0054 21.8 7.5 51 109-159 15-85 (174)
204 cd03174 DRE_TIM_metallolyase D 31.0 1.7E+02 0.0036 23.3 6.0 54 92-156 191-245 (265)
205 COG0779 Uncharacterized protei 31.0 2E+02 0.0043 21.9 6.0 48 110-159 16-67 (153)
206 PRK11020 hypothetical protein; 30.6 80 0.0017 23.0 3.5 49 17-65 6-54 (118)
207 PRK02001 hypothetical protein; 30.6 2.1E+02 0.0046 21.7 6.1 47 110-159 13-61 (152)
208 PRK06545 prephenate dehydrogen 30.5 1.7E+02 0.0038 24.9 6.3 39 91-129 290-328 (359)
209 PRK06291 aspartate kinase; Pro 29.8 2.6E+02 0.0056 24.9 7.4 50 89-140 319-371 (465)
210 PRK00341 hypothetical protein; 29.3 1.9E+02 0.0042 19.9 5.6 63 91-155 17-83 (91)
211 PRK12331 oxaloacetate decarbox 29.2 1.4E+02 0.003 26.7 5.6 38 92-130 198-236 (448)
212 cd04907 ACT_ThrD-I_2 Second of 29.2 1.8E+02 0.0038 19.4 8.0 59 92-155 2-63 (81)
213 PRK11858 aksA trans-homoaconit 29.1 1.8E+02 0.004 25.1 6.2 39 91-130 188-227 (378)
214 cd04917 ACT_AKiii-LysC-EC_2 AC 28.8 1.4E+02 0.0031 18.2 6.2 26 93-118 3-31 (64)
215 PHA01753 Holliday junction res 28.5 2.4E+02 0.0052 20.7 6.0 59 106-164 12-83 (121)
216 cd04891 ACT_AK-LysC-DapG-like_ 27.5 1.3E+02 0.0028 17.3 5.5 26 99-124 9-34 (61)
217 PRK08195 4-hyroxy-2-oxovalerat 27.2 2E+02 0.0043 24.6 6.0 40 90-130 188-228 (337)
218 PRK14636 hypothetical protein; 27.1 3E+02 0.0065 21.3 8.7 52 108-159 11-66 (176)
219 PRK15124 2'-5' RNA ligase; Pro 27.1 2.8E+02 0.006 21.0 6.6 73 92-164 44-117 (176)
220 PF12344 UvrB: Ultra-violet re 26.5 1.1E+02 0.0023 18.4 3.0 26 10-35 12-37 (44)
221 TIGR00656 asp_kin_monofn aspar 25.8 4.3E+02 0.0093 22.7 8.5 37 88-124 257-296 (401)
222 COG0013 AlaS Alanyl-tRNA synth 25.6 6.6E+02 0.014 24.8 12.8 119 43-168 733-852 (879)
223 cd07948 DRE_TIM_HCS Saccharomy 25.5 2.4E+02 0.0052 23.1 6.0 52 92-154 185-237 (262)
224 PRK14041 oxaloacetate decarbox 25.4 1.7E+02 0.0038 26.3 5.5 38 92-130 197-235 (467)
225 PF09849 DUF2076: Uncharacteri 24.9 2.4E+02 0.0053 23.2 5.9 45 18-65 6-71 (247)
226 COG3283 TyrR Transcriptional r 24.6 1.5E+02 0.0032 26.5 4.7 36 93-128 2-37 (511)
227 PRK12581 oxaloacetate decarbox 23.7 2.2E+02 0.0047 25.8 5.8 39 91-130 206-245 (468)
228 PRK06635 aspartate kinase; Rev 23.6 4.5E+02 0.0098 22.6 7.7 51 88-138 259-311 (404)
229 cd07941 DRE_TIM_LeuA3 Desulfob 23.6 1.3E+02 0.0029 24.7 4.2 52 92-154 196-248 (273)
230 TIGR02258 2_5_ligase 2'-5' RNA 23.5 3.2E+02 0.0068 20.4 7.3 63 101-164 50-116 (179)
231 PRK06635 aspartate kinase; Rev 23.2 2.9E+02 0.0063 23.8 6.4 35 89-123 338-375 (404)
232 PRK00915 2-isopropylmalate syn 22.3 4.7E+02 0.01 23.7 7.7 40 91-131 196-236 (513)
233 PF05687 DUF822: Plant protein 22.3 98 0.0021 23.5 2.8 26 6-31 11-36 (150)
234 PF13805 Pil1: Eisosome compon 22.3 2.2E+02 0.0048 23.9 5.2 26 11-36 140-165 (271)
235 TIGR01108 oadA oxaloacetate de 21.9 2.2E+02 0.0047 26.5 5.5 38 92-130 193-231 (582)
236 PF14992 TMCO5: TMCO5 family 21.8 1.2E+02 0.0026 25.5 3.5 24 43-66 145-168 (280)
237 TIGR02660 nifV_homocitr homoci 21.7 3.8E+02 0.0082 23.0 6.7 38 92-130 186-224 (365)
238 PRK08210 aspartate kinase I; R 21.7 5.3E+02 0.011 22.3 8.1 65 85-157 333-400 (403)
239 TIGR00656 asp_kin_monofn aspar 21.6 1.7E+02 0.0037 25.2 4.7 33 90-122 336-371 (401)
240 TIGR03217 4OH_2_O_val_ald 4-hy 21.5 3.5E+02 0.0075 23.1 6.4 38 91-129 188-226 (333)
241 PRK12344 putative alpha-isopro 21.5 3E+02 0.0066 25.1 6.3 40 91-131 201-241 (524)
242 PLN03228 methylthioalkylmalate 21.0 2.6E+02 0.0057 25.5 5.8 39 91-130 286-325 (503)
243 PF06345 Drf_DAD: DRF Autoregu 20.9 1.1E+02 0.0023 14.0 1.7 12 103-114 1-12 (15)
244 PLN02746 hydroxymethylglutaryl 20.8 3.2E+02 0.0069 23.6 6.1 37 92-129 242-279 (347)
245 PF14689 SPOB_a: Sensor_kinase 20.8 2.3E+02 0.005 17.8 5.3 45 11-62 13-57 (62)
246 cd04910 ACT_AK-Ectoine_1 ACT d 20.6 2.6E+02 0.0057 18.3 7.8 58 94-157 4-64 (71)
247 PLN02551 aspartokinase 20.6 5.1E+02 0.011 23.7 7.6 73 82-159 357-432 (521)
248 smart00338 BRLZ basic region l 20.6 1.1E+02 0.0023 19.3 2.4 19 48-66 25-43 (65)
249 PF02576 DUF150: Uncharacteris 20.4 3.5E+02 0.0076 19.7 7.7 49 110-159 4-55 (141)
250 PRK14641 hypothetical protein; 20.4 4.1E+02 0.009 20.6 6.6 47 113-159 20-68 (173)
251 PRK05692 hydroxymethylglutaryl 20.2 2.4E+02 0.0053 23.4 5.1 59 92-155 200-259 (287)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.55 E-value=1.4e-14 Score=93.32 Aligned_cols=54 Identities=43% Similarity=0.687 Sum_probs=50.9
Q ss_pred HHhhhccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 041818 5 LAAKKHSEAERRRRLRINDQYDNLRKILPNL---VKVDKASVLAKTIKTVRELQRTV 58 (173)
Q Consensus 5 ~~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~---~k~~k~sil~~ai~yi~~L~~~~ 58 (173)
..+..|+..||+||++||+.|..|+++||.. .++||++||..||+||+.|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999977 89999999999999999999876
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.54 E-value=1.5e-14 Score=92.10 Aligned_cols=49 Identities=53% Similarity=0.819 Sum_probs=46.2
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHH
Q 041818 7 AKKHSEAERRRRLRINDQYDNLRKILPNL-----VKVDKASVLAKTIKTVRELQ 55 (173)
Q Consensus 7 ~~~h~~~Er~RR~~i~~~~~~L~sl~P~~-----~k~~k~sil~~ai~yi~~L~ 55 (173)
+..|+..||+||++||+.|..|+.+||.. .+++|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999965 78899999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.50 E-value=5.8e-14 Score=88.47 Aligned_cols=49 Identities=39% Similarity=0.674 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 041818 11 SEAERRRRLRINDQYDNLRKILPN---LVKVDKASVLAKTIKTVRELQRTVR 59 (173)
Q Consensus 11 ~~~Er~RR~~i~~~~~~L~sl~P~---~~k~~k~sil~~ai~yi~~L~~~~~ 59 (173)
+..||+||++||+.|..|+++||. ..+++|++||..||+||+.|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999994 6799999999999999999999875
No 4
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.34 E-value=1.3e-11 Score=83.63 Aligned_cols=68 Identities=21% Similarity=0.324 Sum_probs=60.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC-----ccHHHHHHHHHHHhcC
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN-----EGMVMLKRALNLVIDR 159 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~-----~~~~~l~~aL~~~l~~ 159 (173)
..|+|.|++|||||++|..+|-++|+.|.+|.|+|.|+++.++|+|+..+|. .....|+++|..++++
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999999999775 2346788888888764
No 5
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.26 E-value=6e-11 Score=80.33 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=59.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEEeccCC-----ccHHHHHHHHHHHhcCC
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV--PVGGRIKCVLWVQGFKGN-----EGMVMLKRALNLVIDRP 160 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~is--t~~~rv~~~f~vk~~~g~-----~~~~~l~~aL~~~l~~~ 160 (173)
.++|.|.+|||||++|.++|..+|+.|.+|.|+ |.|+++.++|+| ..+|. .....|+++|..+++.|
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 589999999999999999999999999999999 999999999999 55452 33478888888888765
No 6
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.25 E-value=1e-10 Score=78.57 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=57.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCc-cHHHHHHHHHHHhc
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNE-GMVMLKRALNLVID 158 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~-~~~~l~~aL~~~l~ 158 (173)
..|+|.+.+|||+|++|.++|.++|++|..|.|+|.|+++.++|+|...+|+. ..++..+.|...|.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999999999999987763 33455556655543
No 7
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.19 E-value=3.8e-11 Score=103.71 Aligned_cols=59 Identities=34% Similarity=0.610 Sum_probs=52.2
Q ss_pred hhhHH-hhhccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHH
Q 041818 2 AKELA-AKKHSEAERRRRLRINDQYDNLRKILPNL----VKVDKASVLAKTIKTVRELQRTVRE 60 (173)
Q Consensus 2 ~~~~~-~~~h~~~Er~RR~~i~~~~~~L~sl~P~~----~k~~k~sil~~ai~yi~~L~~~~~~ 60 (173)
+|.++ +.+||+.|||||++||+++..|..|||.+ .+..|..||..+++||+.|++..++
T Consensus 228 ~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 228 ERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 34444 89999999999999999999999999976 4667999999999999999998774
No 8
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.08 E-value=1.6e-09 Score=73.43 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=56.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEEeccCC----ccHHHHHHHHHHHhc
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP-VGGRIKCVLWVQGFKGN----EGMVMLKRALNLVID 158 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist-~~~rv~~~f~vk~~~g~----~~~~~l~~aL~~~l~ 158 (173)
+.++|.|+++||+|+++..+|..+|+.|++|.|+| .+++++++|+|...++. ....+++++|.++|-
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLG 72 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999996 89999999999887654 223556777766653
No 9
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.05 E-value=2.6e-10 Score=88.62 Aligned_cols=62 Identities=32% Similarity=0.532 Sum_probs=54.6
Q ss_pred hhHHhhhccHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 041818 3 KELAAKKHSEAERRRRLRINDQYDNLRKILPNL-------VKVDKASVLAKTIKTVRELQRTVREQKAL 64 (173)
Q Consensus 3 ~~~~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~-------~k~~k~sil~~ai~yi~~L~~~~~~l~~~ 64 (173)
|.+++..|--+||+||+.||..|+.|+.|||.+ .|..||.||..+|+||..|++++...+.+
T Consensus 59 k~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e 127 (229)
T KOG1319|consen 59 KDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEE 127 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999954 26779999999999999999987665543
No 10
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.97 E-value=8e-09 Score=69.10 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=53.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEeccCCc-----cHHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV-GGRIKCVLWVQGFKGNE-----GMVMLKRALNLV 156 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~-~~rv~~~f~vk~~~g~~-----~~~~l~~aL~~~ 156 (173)
..|.|.|+++||+|+++..+|..+|++|++|.+.|. +|+++++|+|...+|.. ....++++|.++
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~ 72 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDA 72 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhh
Confidence 468899999999999999999999999999999877 69999999998765542 224455555443
No 11
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.85 E-value=4.6e-08 Score=65.74 Aligned_cols=66 Identities=24% Similarity=0.463 Sum_probs=56.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecc-CC-----ccHHHHHHHHHHHhc
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFK-GN-----EGMVMLKRALNLVID 158 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~-g~-----~~~~~l~~aL~~~l~ 158 (173)
.|+|.++++||+|.+|..+|..+|+.|+.|.+.+.++.+.++|+|.... +. .....++++|.+++.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999998765 32 224677777777664
No 12
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.77 E-value=6.4e-09 Score=85.33 Aligned_cols=58 Identities=31% Similarity=0.566 Sum_probs=51.0
Q ss_pred hhHHhhhccHHHHHHHHHHHHHHHHHhccCCC--------CCCCChhhHHHHHHHHHHHHHHHHHH
Q 041818 3 KELAAKKHSEAERRRRLRINDQYDNLRKILPN--------LVKVDKASVLAKTIKTVRELQRTVRE 60 (173)
Q Consensus 3 ~~~~~~~h~~~Er~RR~~i~~~~~~L~sl~P~--------~~k~~k~sil~~ai~yi~~L~~~~~~ 60 (173)
+..++.+|-+.||+||+|||+.++.|+.|||. .+|++||.||+-|++|++.|+.....
T Consensus 29 ~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 29 RQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 44567899999999999999999999999992 27889999999999999999986543
No 13
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.66 E-value=4.2e-07 Score=60.37 Aligned_cols=64 Identities=27% Similarity=0.348 Sum_probs=54.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEE-eeCCEEEEEEEEEeccCCccHHHHHHHHHHHh
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV-PVGGRIKCVLWVQGFKGNEGMVMLKRALNLVI 157 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~is-t~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l 157 (173)
.|.|.|+++||+|..+..+|..+|+.|+.|.+. +.+|.++++|.|...+| .....|.++|..++
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~-~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKR-GETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCc-cchHHHHHHHHHhh
Confidence 567899999999999999999999999999976 55789999999998854 44567888887765
No 14
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.58 E-value=9.2e-07 Score=58.99 Aligned_cols=68 Identities=26% Similarity=0.315 Sum_probs=55.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
..|.|.++++||+|.+|..+|.++|+.|+++.+.+.++.++++|.|...++.....+..+.|.+.|-.
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~~ 69 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEIGP 69 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHhcc
Confidence 46788999999999999999999999999999999989999999998766542233455556666553
No 15
>PRK05007 PII uridylyl-transferase; Provisional
Probab=98.57 E-value=3.6e-07 Score=86.80 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=63.1
Q ss_pred cCCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCc----cHHHHHHHHHHHhcC
Q 041818 87 RDRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNE----GMVMLKRALNLVIDR 159 (173)
Q Consensus 87 ~~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~----~~~~l~~aL~~~l~~ 159 (173)
.++....|+|.+.+|||||++|+++|.++|++|.+|.|+|.|+++.++|+|...+|.. ....|+++|..+|+.
T Consensus 804 ~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 804 HTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred CCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence 4567899999999999999999999999999999999999999999999999887652 246677777777643
No 16
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.57 E-value=9e-07 Score=57.92 Aligned_cols=64 Identities=25% Similarity=0.403 Sum_probs=53.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCc----cHHHHHHHHHHH
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNE----GMVMLKRALNLV 156 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~----~~~~l~~aL~~~ 156 (173)
.|.|.+.++||+|.+|+.+|.++++.|.++++.+.++.+.+.|.+....|.. ....++++|.++
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 5788999999999999999999999999999999999999999999876542 223455555544
No 17
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=98.54 E-value=1e-06 Score=83.43 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=60.7
Q ss_pred cCCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCcc----HHHHHHHHHHHh
Q 041818 87 RDRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEG----MVMLKRALNLVI 157 (173)
Q Consensus 87 ~~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~----~~~l~~aL~~~l 157 (173)
.++....|+|.+.++||||++|.++|.++|++|.+|.|+|.|+++.++|+|...+|... ..+|+++|..+|
T Consensus 779 ~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 779 EKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred CCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 45668999999999999999999999999999999999999999999999998876522 256666666554
No 18
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.51 E-value=1.3e-07 Score=87.92 Aligned_cols=52 Identities=29% Similarity=0.464 Sum_probs=48.6
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 041818 6 AAKKHSEAERRRRLRINDQYDNLRKILPNL----VKVDKASVLAKTIKTVRELQRT 57 (173)
Q Consensus 6 ~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~----~k~~k~sil~~ai~yi~~L~~~ 57 (173)
.+.+|+.+||+||++||..+.+|.+|||.. -|+||.+||..||.+|+.+++.
T Consensus 20 ~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 20 KRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 489999999999999999999999999965 5999999999999999999875
No 19
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=98.43 E-value=1.9e-06 Score=82.06 Aligned_cols=74 Identities=18% Similarity=0.290 Sum_probs=64.5
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC-----ccHHHHHHHHHHHhcCCCC
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN-----EGMVMLKRALNLVIDRPVS 162 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~-----~~~~~l~~aL~~~l~~~~~ 162 (173)
++...|+|.+.++||||++|..+|..+|+.|++|.|+|.|+++.++|+|...+|. .....|+++|.++|..+..
T Consensus 812 ~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~ 890 (895)
T PRK00275 812 RPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNE 890 (895)
T ss_pred CCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence 4678999999999999999999999999999999999999999999999987664 1346788888888865543
No 20
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.37 E-value=4e-07 Score=75.71 Aligned_cols=59 Identities=29% Similarity=0.447 Sum_probs=51.3
Q ss_pred hhHHhhhccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 041818 3 KELAAKKHSEAERRRRLRINDQYDNLRKILPN--LVKVDKASVLAKTIKTVRELQRTVREQ 61 (173)
Q Consensus 3 ~~~~~~~h~~~Er~RR~~i~~~~~~L~sl~P~--~~k~~k~sil~~ai~yi~~L~~~~~~l 61 (173)
|..++.--|.-||+|..-||..|..||+|+|. ..|.+||.||+.+.+||.+|.++..+|
T Consensus 57 rRmRReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 57 RRMRREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHHHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 34567777888999999999999999999995 489999999999999999999876544
No 21
>PRK04374 PII uridylyl-transferase; Provisional
Probab=98.35 E-value=4.3e-06 Score=79.42 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=62.1
Q ss_pred cCCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC----ccHHHHHHHHHHHhc
Q 041818 87 RDRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN----EGMVMLKRALNLVID 158 (173)
Q Consensus 87 ~~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~----~~~~~l~~aL~~~l~ 158 (173)
..+....|+|.+.++||||++|..+|.++|+.|++|.|+|.|+++.++|+|...+|. ....+|+++|..+|+
T Consensus 792 ~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~ 867 (869)
T PRK04374 792 AGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLD 867 (869)
T ss_pred CCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence 345679999999999999999999999999999999999999999999999987664 223677777777764
No 22
>PRK05092 PII uridylyl-transferase; Provisional
Probab=98.29 E-value=8.4e-06 Score=78.01 Aligned_cols=74 Identities=23% Similarity=0.348 Sum_probs=64.8
Q ss_pred CCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC-----ccHHHHHHHHHHHhcCCC
Q 041818 88 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN-----EGMVMLKRALNLVIDRPV 161 (173)
Q Consensus 88 ~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~-----~~~~~l~~aL~~~l~~~~ 161 (173)
.+....|.|.+.++||+|++|..+|.++|+.|.+|.|.|.++++.++|+|...+|. .....|+++|..+|....
T Consensus 840 s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~ 918 (931)
T PRK05092 840 SNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGE 918 (931)
T ss_pred CCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCcc
Confidence 35578999999999999999999999999999999999999999999999987654 134779999999986543
No 23
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.25 E-value=1.6e-05 Score=51.50 Aligned_cols=63 Identities=25% Similarity=0.382 Sum_probs=51.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCc----cHHHHHHHHHH
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNE----GMVMLKRALNL 155 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~----~~~~l~~aL~~ 155 (173)
.|.|.|+++||++.+++.+|.++++.|.++.+.+.+++....|.+...++.. ....++++|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~ 68 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALED 68 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence 5778999999999999999999999999999999888999999998876442 23445555544
No 24
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.25 E-value=2.3e-06 Score=69.40 Aligned_cols=58 Identities=26% Similarity=0.486 Sum_probs=48.7
Q ss_pred HHhhhccHHHHHHHHHHHHHHHHHhccCCCC--CCCC-hhhHHHHHHHHHHHHHHHHHHHH
Q 041818 5 LAAKKHSEAERRRRLRINDQYDNLRKILPNL--VKVD-KASVLAKTIKTVRELQRTVREQK 62 (173)
Q Consensus 5 ~~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~--~k~~-k~sil~~ai~yi~~L~~~~~~l~ 62 (173)
.++..||.-||+||..|++.|..|+.+||.. .+.. .++||..|..||+.|+.+....+
T Consensus 58 ~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~ 118 (232)
T KOG2483|consen 58 SSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQ 118 (232)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHH
Confidence 3578999999999999999999999999965 2222 58999999999999998765443
No 25
>PRK03381 PII uridylyl-transferase; Provisional
Probab=98.21 E-value=8.3e-06 Score=76.64 Aligned_cols=68 Identities=21% Similarity=0.319 Sum_probs=57.8
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHh
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVI 157 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l 157 (173)
+....|+|.+.++||+|++|..+|..+|++|++|.|+|.|+++.++|+|...+|....+. .+.|.+.|
T Consensus 705 ~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L 772 (774)
T PRK03381 705 PDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA-RAAVEQAV 772 (774)
T ss_pred CCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH-HHHHHHHh
Confidence 456899999999999999999999999999999999999999999999998877543333 45555443
No 26
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=4.4e-06 Score=77.67 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=65.1
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhcCCCCC
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDRPVSP 163 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~~~~~ 163 (173)
.....+++.+.+|||+|..|..+|.++++++.+|.|+|+|.++.++|+|.+..|..-..++++.|.+.+-....|
T Consensus 789 ~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~ 863 (867)
T COG2844 789 NDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAELRQSLLQRLLEALLP 863 (867)
T ss_pred CCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCCHHHHHHHHHHHHHHhcc
Confidence 346889999999999999999999999999999999999999999999999987655677777777766655444
No 27
>PRK03059 PII uridylyl-transferase; Provisional
Probab=98.16 E-value=1.2e-05 Score=76.37 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=60.2
Q ss_pred CCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC--ccHHHHHHHHHHHhc
Q 041818 88 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVID 158 (173)
Q Consensus 88 ~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~--~~~~~l~~aL~~~l~ 158 (173)
.++...|+|.+.++||+|++|..+|..+|++|++|.|+|.|+++.++|+|.+.... .....|+++|.++|+
T Consensus 783 ~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 783 RGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred CCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999999999999999999999999999644321 335678888877764
No 28
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=98.14 E-value=2.5e-05 Score=74.05 Aligned_cols=73 Identities=22% Similarity=0.186 Sum_probs=63.9
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEE-eeCCEEEEEEEEEeccCCc-----cHHHHHHHHHHHhcCCC
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV-PVGGRIKCVLWVQGFKGNE-----GMVMLKRALNLVIDRPV 161 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~is-t~~~rv~~~f~vk~~~g~~-----~~~~l~~aL~~~l~~~~ 161 (173)
.+.+.|.|.+.++||+|+.|..+|..+|++|++|.|. +.+|+++++|+|....|.. ....|+++|.++|....
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~ 744 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLA 744 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCC
Confidence 5678899999999999999999999999999999998 7799999999999886541 24678899999998744
No 29
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=98.04 E-value=4.3e-05 Score=72.63 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=65.2
Q ss_pred CCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEEeccCC----ccHHHHHHHHHHHhcCCCC
Q 041818 88 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP-VGGRIKCVLWVQGFKGN----EGMVMLKRALNLVIDRPVS 162 (173)
Q Consensus 88 ~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist-~~~rv~~~f~vk~~~g~----~~~~~l~~aL~~~l~~~~~ 162 (173)
..+...|.|.++++||+|+.|..+|..+|+.|++|.|.| .+|+++++|+|...+|. .....|+++|.+++.....
T Consensus 674 ~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~~~ 753 (854)
T PRK01759 674 SRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTNKL 753 (854)
T ss_pred CCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Confidence 346789999999999999999999999999999999876 89999999999988664 2335688999999886553
Q ss_pred CC
Q 041818 163 PG 164 (173)
Q Consensus 163 ~~ 164 (173)
+.
T Consensus 754 ~~ 755 (854)
T PRK01759 754 KK 755 (854)
T ss_pred cc
Confidence 33
No 30
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.99 E-value=7.1e-05 Score=71.39 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=62.2
Q ss_pred CCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEeccCC----ccHHHHHHHHHHHhcCC
Q 041818 88 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGN----EGMVMLKRALNLVIDRP 160 (173)
Q Consensus 88 ~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~-~rv~~~f~vk~~~g~----~~~~~l~~aL~~~l~~~ 160 (173)
.++.+.|.|.|+++||+|+.|..+|..+|++|++|.|.|.+ |+++++|+|...+|. .....|+++|.++|...
T Consensus 698 ~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~ 775 (884)
T PRK05007 698 TRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQS 775 (884)
T ss_pred CCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 34678999999999999999999999999999999987665 599999999988664 23356899999988765
No 31
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.98 E-value=9.8e-05 Score=49.61 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=56.5
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
.+.|.+.++++||++..+..+|.++|..+..++.++.++.+.-++.+...+ .....|+.+|..+..+
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~--~~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPE--DSLERLESALEELAEE 68 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESH--HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCc--ccHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999888884 3667888888877543
No 32
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.98 E-value=3.8e-05 Score=72.84 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=59.1
Q ss_pred CCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCc----cHHHHHHHHHHHh
Q 041818 88 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNE----GMVMLKRALNLVI 157 (173)
Q Consensus 88 ~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~----~~~~l~~aL~~~l 157 (173)
.+....|+|.|.++||+|.+|.++|.++|++|.+|.|+|.|+++.++|++....|.. ....|+++|..++
T Consensus 776 s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 776 SRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred CCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999999999999999999999999876542 2355566655543
No 33
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.94 E-value=0.00024 Score=45.31 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=47.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC--EEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG--RIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~--rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
..|.+.|+++||+|.+++.+|.++|+.|.++...+.++ .....+.... ......+.++|.++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---EEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---GHGHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---CCCHHHHHHHHHcc
Confidence 36788999999999999999999999999999988877 3333332222 25567777777765
No 34
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.94 E-value=7.5e-05 Score=70.30 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=64.2
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC-ccHHHHHHHHHHHhcCC
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN-EGMVMLKRALNLVIDRP 160 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~-~~~~~l~~aL~~~l~~~ 160 (173)
.+.+.|.|.|.++||++++|..+|..+|+.|++|+|.+.+|.++++|+|....|. ...+.++++|.+++...
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~~~ 669 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRALDGD 669 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHHHcCC
Confidence 4668899999999999999999999999999999999999999999999987665 44578899999888764
No 35
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.89 E-value=5.5e-06 Score=77.73 Aligned_cols=57 Identities=32% Similarity=0.472 Sum_probs=52.2
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 041818 6 AAKKHSEAERRRRLRINDQYDNLRKILPNL-VKVDKASVLAKTIKTVRELQRTVREQK 62 (173)
Q Consensus 6 ~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~-~k~~k~sil~~ai~yi~~L~~~~~~l~ 62 (173)
.+.+||++|++-|..||+++.+|+.+||.. .|..|..+|..||+||++|+...+.++
T Consensus 276 kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk 333 (953)
T KOG2588|consen 276 KRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLK 333 (953)
T ss_pred ccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccc
Confidence 378999999999999999999999999976 899999999999999999998766554
No 36
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.83 E-value=5.6e-05 Score=51.80 Aligned_cols=48 Identities=35% Similarity=0.448 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhccCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 041818 19 LRINDQYDNLRKILPNL------VKVDKASVLAKTIKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 19 ~~i~~~~~~L~sl~P~~------~k~~k~sil~~ai~yi~~L~~~~~~l~~~~~ 66 (173)
+.|++.+..|+.|+|.. ++..-+-+|++|..||+.|+.++..|.....
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs 73 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLS 73 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999943 4555667999999999999999999876544
No 37
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.77 E-value=0.00021 Score=67.98 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=62.6
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEE-EeeCCEEEEEEEEEeccCCc----cHHHHHHHHHHHhcCCC
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEM-VPVGGRIKCVLWVQGFKGNE----GMVMLKRALNLVIDRPV 161 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~i-st~~~rv~~~f~vk~~~g~~----~~~~l~~aL~~~l~~~~ 161 (173)
.+.+.|.|.|+++||+|+.+..+|..+|+.|+.|.| ++.+|.++++|+|....|.. ..+.++++|.++|....
T Consensus 676 ~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~~ 753 (856)
T PRK03059 676 GEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQA 753 (856)
T ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCCC
Confidence 467889999999999999999999999999999998 56789999999999876552 25678889988887644
No 38
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.73 E-value=0.00025 Score=67.77 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=62.1
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEE-EeeCCEEEEEEEEEeccCCc------cHHHHHHHHHHHhcCCC
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEM-VPVGGRIKCVLWVQGFKGNE------GMVMLKRALNLVIDRPV 161 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~i-st~~~rv~~~f~vk~~~g~~------~~~~l~~aL~~~l~~~~ 161 (173)
.+.+.|.|.|.++||+|+++..+|..+|+.|+.|.| ++.+|.++++|+|....|.. ..+.|+++|.++|....
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~ 781 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD 781 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCC
Confidence 367889999999999999999999999999999997 66688999999999876652 23568888988887644
No 39
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.73 E-value=0.00011 Score=59.81 Aligned_cols=60 Identities=25% Similarity=0.426 Sum_probs=48.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHHh-ccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 041818 7 AKKHSEAERRRRLRINDQYDNLR-KILPNL-VKVDKASVLAKTIKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 7 ~~~h~~~Er~RR~~i~~~~~~L~-sl~P~~-~k~~k~sil~~ai~yi~~L~~~~~~l~~~~~ 66 (173)
+..--+.||+|=.|+|+.|..|+ .-.+|. ...-|..||..||+||..||.-++++.....
T Consensus 119 RKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 119 RKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 44556789999999999999995 444555 5678999999999999999999988765433
No 40
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.72 E-value=3.3e-05 Score=62.54 Aligned_cols=58 Identities=26% Similarity=0.407 Sum_probs=51.0
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 041818 6 AAKKHSEAERRRRLRINDQYDNLRKILPN----LVKVDKASVLAKTIKTVRELQRTVREQKA 63 (173)
Q Consensus 6 ~~~~h~~~Er~RR~~i~~~~~~L~sl~P~----~~k~~k~sil~~ai~yi~~L~~~~~~l~~ 63 (173)
.+..+|..||+|=..+|..|..||.+||. ..|..|..+|.-||.||+.|+.-++.-+.
T Consensus 109 ~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 109 QRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 35667888999999999999999999993 56889999999999999999998877554
No 41
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.65 E-value=0.00061 Score=64.97 Aligned_cols=73 Identities=21% Similarity=0.123 Sum_probs=62.9
Q ss_pred CCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEEeccCC--ccHHHHHHHHHHHhcCC
Q 041818 88 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP-VGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDRP 160 (173)
Q Consensus 88 ~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist-~~~rv~~~f~vk~~~g~--~~~~~l~~aL~~~l~~~ 160 (173)
..+.+.|.|.|.++||+|+.|..+|..+|+.|+.|.|.+ .+|.++++|+|....|. .....+.++|.++|...
T Consensus 687 ~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 687 DNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLAGD 762 (869)
T ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcCC
Confidence 346788999999999999999999999999999999876 68999999999987663 34566889998888764
No 42
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.65 E-value=0.00083 Score=45.19 Aligned_cols=66 Identities=21% Similarity=0.363 Sum_probs=55.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
+.|.+.|+++||+...|...|.++|..++.++....++.+.-.+.+.... .+...|+++|..+-.+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~--~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW--DAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc--ccHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999887777776552 3567888888775433
No 43
>PRK00194 hypothetical protein; Validated
Probab=97.64 E-value=0.0004 Score=47.80 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=56.5
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
.+.|.+.|+++||++..+.+.|-++|+.|...+..+.++.+.-.+.+...........|++.|..+...
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~ 71 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKE 71 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999888888877777666553234567888888776544
No 44
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.60 E-value=0.00045 Score=47.50 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=57.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
+.|.+.|+++||++..+.+.|-++|..+.+.+..+.++.+.-.+.+...+.......|+++|..+...
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~ 69 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGKE 69 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999888888887777777653135578888888877654
No 45
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.59 E-value=0.00085 Score=44.73 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=57.0
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 94 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 94 I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
|.+.+++|||+...+.++|.++|+.+.+.+.++.++.+.-.+.+...++ .....|+++|..+...
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~-~~~~~l~~~l~~l~~~ 66 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS-ADSEALLKDLLFKAHE 66 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC-CCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999888888887653 5678899998887654
No 46
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.55 E-value=0.0008 Score=64.61 Aligned_cols=71 Identities=25% Similarity=0.446 Sum_probs=61.0
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEEeccCC-----ccHHHHHHHHHHHhcC
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP-VGGRIKCVLWVQGFKGN-----EGMVMLKRALNLVIDR 159 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist-~~~rv~~~f~vk~~~g~-----~~~~~l~~aL~~~l~~ 159 (173)
.+.+.|.|.|.++||+|..|+.+|..+|++|++|.|.| .+|.++++|+|....|. .....|.++|.+++..
T Consensus 730 ~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~ 806 (931)
T PRK05092 730 RGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSG 806 (931)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999999876 68899999999877653 2356788889888854
No 47
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.54 E-value=0.0006 Score=44.38 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=55.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC--ccHHHHHHHHHHHh
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVI 157 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~--~~~~~l~~aL~~~l 157 (173)
.|.|.|+++.||=-++++.+-++||.|+...++|.|.+-..+|.|...... ..=+.|++.|.++.
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~C 68 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSAC 68 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhcC
Confidence 578999999999999999999999999999999999999999998876432 34477888887653
No 48
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.48 E-value=0.0018 Score=43.30 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=54.4
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC------CEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 94 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG------GRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 94 I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~------~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
|.+.|+++||++.+|.+.|.++|+.|.+.+..+.+ +.+.-.+.+.... ..+...++++|..+..+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~l~~~ 72 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEELCDD 72 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999998887 6666666666663 45678999888887654
No 49
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.45 E-value=0.0021 Score=42.58 Aligned_cols=66 Identities=23% Similarity=0.246 Sum_probs=49.4
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 94 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP--VGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 94 I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist--~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
|.+.|+++||++.+|.+.|.++|+.+...+..+ .++.+.-.+.+....++.....|+++|..+...
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 69 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAE 69 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 688999999999999999999999999998775 344433333333333235678999888877543
No 50
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.35 E-value=0.0017 Score=43.62 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=47.7
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEeccCCccHHHHHHHHH
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALN 154 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~--~~rv~~~f~vk~~~g~~~~~~l~~aL~ 154 (173)
.+.++|.+.++||+|.+|+.++.+.|..+.+.++.+. ++.+.-.|.+...+ ......|..+|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d-~~~L~~ii~~L~ 70 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD-LEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS-HHHHHHHHHHHC
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC-HHHHHHHHHHHH
Confidence 5789999999999999999999999999999999885 67888888777652 234444444444
No 51
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.03 E-value=0.0049 Score=40.48 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=49.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV-GGRIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~-~~rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
+.+.+.+.++||++.+|+.+|.+.|..+...+.... ++...-.|.+...+.+.....+..+|+++
T Consensus 1 ~~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i 66 (76)
T cd04888 1 VTLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREI 66 (76)
T ss_pred CEEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcC
Confidence 357889999999999999999999999988887554 46666777777653223566777777654
No 52
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.98 E-value=0.0095 Score=38.96 Aligned_cols=62 Identities=15% Similarity=0.223 Sum_probs=46.9
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 94 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 94 I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~-~rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
+++.+.++||+|.+|+.++.+.|..+.+.+..... +...-.|.++..+ ......+..+|.++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~-~~~l~~i~~~L~~i 64 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPS-EEHAETIVAAVRAL 64 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCC-HHHHHHHHHHHhcC
Confidence 67889999999999999999999999999987764 6666666666552 34445566665543
No 53
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.0084 Score=38.28 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=43.1
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 94 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV-----GGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 94 I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~-----~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+.|.++++||.|.+|+.+|.+.|+.+.+.+.... .+.....|.+... +......+..+|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-GAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-CHHHHHHHHHHHHH
Confidence 3578899999999999999999999998887654 3555555555553 22334555555544
No 54
>PRK04435 hypothetical protein; Provisional
Probab=96.56 E-value=0.021 Score=43.24 Aligned_cols=70 Identities=13% Similarity=0.185 Sum_probs=54.7
Q ss_pred cCCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 87 RDRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP-VGGRIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 87 ~~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist-~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
..+..+.+.+.+.++||+|.+|++.|.+.|..|...+.+. .+|...-.|.+...+......+|.++|.++
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i 135 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNL 135 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcC
Confidence 3577899999999999999999999999999998887644 356677778777764333566777776654
No 55
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.018 Score=54.29 Aligned_cols=74 Identities=19% Similarity=0.133 Sum_probs=59.6
Q ss_pred CeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEE-EeeCCEEEEEEEEEeccCCc----cHHHHHHHHHHHhcCCCCC
Q 041818 90 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEM-VPVGGRIKCVLWVQGFKGNE----GMVMLKRALNLVIDRPVSP 163 (173)
Q Consensus 90 ~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~i-st~~~rv~~~f~vk~~~g~~----~~~~l~~aL~~~l~~~~~~ 163 (173)
+...|.|.|+++|+++..++.++...|++|+.|.| ++-+|+.+++|+|....|.. -...+...|.+++.....+
T Consensus 683 ~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~~~~ 761 (867)
T COG2844 683 GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEALLSGKAQ 761 (867)
T ss_pred CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHHhcCCCC
Confidence 55788889999999999999999999999999995 56678999999999876642 2345566677777665554
No 56
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.41 E-value=0.02 Score=37.84 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=33.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR 130 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~r 130 (173)
.++|.|.+++|+|.+|+.++.+.|..+.+.++.+. +.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~ 38 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR 38 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce
Confidence 47889999999999999999999999999998775 44
No 57
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.31 E-value=0.039 Score=46.28 Aligned_cols=69 Identities=22% Similarity=0.273 Sum_probs=55.0
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP--VGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist--~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
.+.|.+.|+++||+...|.++|.++|+.+.+.+.++ .++.+.-.+.+.......+...|+++|..+...
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~ 76 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAEE 76 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999998 888655555555422234578888888877654
No 58
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.23 E-value=0.059 Score=34.26 Aligned_cols=59 Identities=17% Similarity=0.343 Sum_probs=41.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEeccCCccHHHHHHHHH
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGNEGMVMLKRALN 154 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~-~rv~~~f~vk~~~g~~~~~~l~~aL~ 154 (173)
.+.+.+.+++|.+.+++..|.+.+..+.+.+..+.+ +...-.|.+... .....+.++|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~L~ 61 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV---GDIEELVEELR 61 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc---ccHHHHHHHHh
Confidence 467899999999999999999999999988876653 444444444433 23334444443
No 59
>PRK08577 hypothetical protein; Provisional
Probab=96.09 E-value=0.094 Score=38.94 Aligned_cols=68 Identities=18% Similarity=0.312 Sum_probs=50.0
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~--~rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
...+.+.+.+.++||+|.++++.|.+++..+.+.+..+.. +...-.|.+...+.......+.+.|.++
T Consensus 54 k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l 123 (136)
T PRK08577 54 KKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKL 123 (136)
T ss_pred ccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcC
Confidence 4578999999999999999999999999999888876653 4444555555553224456666666543
No 60
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.09 E-value=0.051 Score=33.36 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=41.7
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEeccCCccHHHHHHHHH
Q 041818 94 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGNEGMVMLKRALN 154 (173)
Q Consensus 94 I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~-~rv~~~f~vk~~~g~~~~~~l~~aL~ 154 (173)
+++.+.++||.+..++..|.++++.+.+..+...+ +...-.|.+.... ......+.++|.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 61 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD-LEHLARIMRKLR 61 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC-HHHHHHHHHHHh
Confidence 36788999999999999999999999998887665 4444455555442 223344444443
No 61
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.01 E-value=0.043 Score=35.43 Aligned_cols=63 Identities=8% Similarity=0.100 Sum_probs=43.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~--~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+++.+.+.+++|++.+++..|.+.|..+.+.+..+.. +...-.+.+... .......+.++|++
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~i~~L~~ 65 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET-SEAALNAALAEIEA 65 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC-CHHHHHHHHHHHHc
Confidence 3688899999999999999999999999888866542 444444444433 22333444555543
No 62
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=95.92 E-value=0.085 Score=44.15 Aligned_cols=63 Identities=17% Similarity=0.097 Sum_probs=51.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~--~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
.|.+.|+++||+...|...|-++|..|+.++-+.. ++.+.-.+.+...+...+..+|+++|..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999997774 4777666666655434667889988888
No 63
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=95.90 E-value=0.099 Score=33.03 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=44.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~--~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
.+.+.+.++||.|.+++..|.+.+..+.+.+..+. ++...-.|.+... + .....+..+|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD-D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC-H-HHHHHHHHHHhC
Confidence 46778899999999999999999999988887664 4556666666653 2 344455555543
No 64
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.82 E-value=0.12 Score=33.92 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=43.7
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEecc--CCccHHHHHHHHHHH
Q 041818 95 TLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG-RIKCVLWVQGFK--GNEGMVMLKRALNLV 156 (173)
Q Consensus 95 ~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~-rv~~~f~vk~~~--g~~~~~~l~~aL~~~ 156 (173)
-+..+++||.|.+++..+.++|+.+.+....+..+ .-...|++.-.. .......+.+.|.+.
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRV 67 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 34557899999999999999999999998777654 456666666553 233444555555543
No 65
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=95.77 E-value=0.041 Score=43.56 Aligned_cols=66 Identities=15% Similarity=0.299 Sum_probs=56.1
Q ss_pred CeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHh
Q 041818 90 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVI 157 (173)
Q Consensus 90 ~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l 157 (173)
..+.|.+.+++|||+...|.++|.++|..+..++.+..|+.+.-++.+.... .....|+.+|..+-
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~--~~~~~le~~L~~l~ 72 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSW--NAITLIESTLPLKG 72 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCCh--hHHHHHHHHHHhhh
Confidence 3578999999999999999999999999999999999999888888885543 46677777776654
No 66
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=95.76 E-value=0.088 Score=33.11 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=44.5
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 94 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 94 I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~--~rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
+.+.+.+++|.+.+++..|.+.|+.+.+..+...+ +...-.|.+.. . ....+.+.|+++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~---~-~~~~l~~~l~~~ 62 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS---P-VPEEVLEELKAL 62 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC---C-CCHHHHHHHHcC
Confidence 56788999999999999999999999999887764 66666666622 2 344666666543
No 67
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.74 E-value=0.18 Score=33.65 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=44.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~-~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
.+.+..+++||.|.+++..+.++|+.+.+....+.. +.....|++.... ......+..+|..
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~-~~~~~~~~~~l~~ 65 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEG-HIEDPNVAEALEE 65 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEEC-CCCCHHHHHHHHH
Confidence 455666789999999999999999999888776664 3456777777663 2233444444433
No 68
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.69 E-value=0.091 Score=33.17 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=40.8
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 94 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 94 I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~--~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+.+.+.++||.+.+++..|.++|..+.+...... ++...-.|.++.. ....+.++|.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~----~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP----IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC----CCHHHHHHHHc
Confidence 5678899999999999999999999988876652 3444434544433 33455555554
No 69
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.45 E-value=0.13 Score=33.56 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=40.5
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 94 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV---GGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 94 I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~---~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+.+.-+++||.|.++++.|.++|..|++...... .+.-...+.+.....+ ..+.|.++|.+
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~-~~~~i~~~L~~ 65 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS-KENELIEELKA 65 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch-HHHHHHHHHhC
Confidence 4667889999999999999999999988876654 2333344444442111 24455555543
No 70
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.43 E-value=0.14 Score=29.58 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=30.6
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 041818 94 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG 128 (173)
Q Consensus 94 I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~ 128 (173)
|.+.|++.+|.+.+++..|...++.+...+.....
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788899999999999999999999999876654
No 71
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.42 E-value=0.1 Score=43.82 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=51.4
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEEec-cCCccHHHHHHHHHHHhcC
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV--PVGGRIKCVLWVQGF-KGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~is--t~~~rv~~~f~vk~~-~g~~~~~~l~~aL~~~l~~ 159 (173)
.+.|.+.|+++||+...|...|-+.|..|+.++-. +..+.++-.+.+... ....+..+|+++|..+-..
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~ 80 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEK 80 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999975 344444433333322 1345678899888876554
No 72
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=95.38 E-value=0.18 Score=47.32 Aligned_cols=67 Identities=13% Similarity=0.014 Sum_probs=57.7
Q ss_pred EEEEEEc-cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC-ccHHHHHHHHHHHhcC
Q 041818 92 LKVTLSC-EDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN-EGMVMLKRALNLVIDR 159 (173)
Q Consensus 92 v~I~I~c-~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~-~~~~~l~~aL~~~l~~ 159 (173)
..+.|.. ++++|+++++...|--+|+.|.+|++.+ +|.....|.|....|. .+...+.+++.+.+..
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 615 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYS 615 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcC
Confidence 4556666 9999999999999999999999999999 8888899999987664 6778888888888765
No 73
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.20 E-value=0.17 Score=31.71 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=33.8
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEE
Q 041818 94 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQ 138 (173)
Q Consensus 94 I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~--~rv~~~f~vk 138 (173)
+.+.-+++||.|.+++..|.+.|..|.+....... +.....|.+.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve 48 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTE 48 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeC
Confidence 56677899999999999999999999777654443 4444455443
No 74
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=95.18 E-value=0.13 Score=39.52 Aligned_cols=64 Identities=14% Similarity=0.251 Sum_probs=50.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~--~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
.+.+..+++||.|.++...+...|..+.+..+...+ +...-+|.+.+ +......+..+|.++++
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--d~~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--DDKVLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--CHHHHHHHHHHHhcCcc
Confidence 567888999999999999999999999998887775 45555666654 24566777888877765
No 75
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=95.16 E-value=0.13 Score=39.63 Aligned_cols=64 Identities=16% Similarity=0.269 Sum_probs=49.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~--~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
.+.+..+++||.|.+|...+...|..+.+..+...+ +...-+|.+.+. ....+.+..+|.++++
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~--~~~i~qi~kQl~KLid 69 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGD--EQVIEQITKQLNKLID 69 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECC--HHHHHHHHHHHhcccc
Confidence 577888999999999999999999999998877765 445555555543 3566777777777765
No 76
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=95.15 E-value=0.13 Score=34.71 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=46.0
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC--EEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG--RIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~--rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
..+.+...++||+|.+++..+..-|..+-+.++...++ ...-++.+.++ ....+.|..+|.++++
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~--~~~i~qi~kQL~KLid 69 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCT--ENEATLLVSQLKKLIN 69 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECC--HHHHHHHHHHHhCCcC
Confidence 35778889999999999999999999988888775553 33444443333 3555667777766543
No 77
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=95.12 E-value=0.21 Score=41.94 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=51.7
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP--VGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist--~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
.+.|.+.|+++||+...+.+.|-++|+.|...+..+ .++.+.-.+.+... .+.+...|+++|..+...
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~~~~~~L~~~L~~l~~~ 76 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EGLDEDALRAGFAPIAAR 76 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999988763 33444434444433 235688999998887654
No 78
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=95.06 E-value=0.014 Score=44.42 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=46.8
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 041818 6 AAKKHSEAERRRRLRINDQYDNLRKILPNL--VKVDKASVLAKTIKTVRELQRTVR 59 (173)
Q Consensus 6 ~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~--~k~~k~sil~~ai~yi~~L~~~~~ 59 (173)
.+.-|++.||+|=..+|+.|..||.++|.. .|.+|.--|.-|..||-.|-+-++
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence 367899999999999999999999999954 777888889999999998876543
No 79
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.98 E-value=0.33 Score=31.09 Aligned_cols=46 Identities=11% Similarity=0.234 Sum_probs=34.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-C-EEEEEEEEE
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-G-RIKCVLWVQ 138 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~-~-rv~~~f~vk 138 (173)
.+.+.++++||.|.+++..|.++|+.+......... + .....|.++
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 467889999999999999999999999877655542 2 233345555
No 80
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=94.95 E-value=0.033 Score=49.78 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=46.8
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHhccCC---CC-CCCChhhHHHHHHHHHHHHHHHHHHH
Q 041818 6 AAKKHSEAERRRRLRINDQYDNLRKILP---NL-VKVDKASVLAKTIKTVRELQRTVREQ 61 (173)
Q Consensus 6 ~~~~h~~~Er~RR~~i~~~~~~L~sl~P---~~-~k~~k~sil~~ai~yi~~L~~~~~~l 61 (173)
++..+|+.||-|=..||+.|.+|..+.- +. ..-.|.-||..||.-|-.|+++|.+-
T Consensus 526 RR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 526 RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 3677899999999999999999988753 22 33468999999999999999999864
No 81
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=94.83 E-value=0.16 Score=32.66 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=36.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEe
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQG 139 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~ 139 (173)
.+.|..+++||.|.+++..|.+.|+.|.+.-+...++. .++.+..
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 57788999999999999999999999988877666553 4555544
No 82
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=94.65 E-value=0.25 Score=36.97 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=57.5
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEE-EEeeCCEEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAE-MVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~-ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
+..+.+.+...+|.|.|+++++++...++.|+..+ -.+.+|+...++.+..+.-..+++.+.++|..+
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~ 138 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRKV 138 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhcc
Confidence 45688889999999999999999999999998877 678899999999888874456778888888654
No 83
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=94.60 E-value=0.33 Score=32.78 Aligned_cols=64 Identities=20% Similarity=0.288 Sum_probs=48.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~--~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
..+.+...++||+|.+++..+..-|..|-+.++... ++...-++.+. +....+.|...|.++++
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~---~~~~i~ql~kQL~KL~d 69 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA---SERPIDLLSSQLNKLVD 69 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC---CCchHHHHHHHHhcCcC
Confidence 356778889999999999999999999988887774 45555555552 45677788888877654
No 84
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=94.53 E-value=0.17 Score=32.76 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 100 DQPELMSDLSRALRSVKGRLVRAEMVP--VGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 100 ~r~glL~~Il~aLeelgL~Vv~a~ist--~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
++||+|.+|+..+..-|..+-+.++.. .++...-++.+.+. ....+.|..+|.++++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~--~~~i~~l~~Ql~Klid 59 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD--DREIEQLVKQLEKLID 59 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---CCHHHHHHHHHHCSTT
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC--chhHHHHHHHHhccCC
Confidence 479999999999999999998888877 55666666666553 3667778888877654
No 85
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=94.49 E-value=0.086 Score=36.76 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=57.6
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhcCC
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDRP 160 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~~ 160 (173)
-+.|.|...+|||....+..+|-++|..+++.+=+-..|++.=.+.|.-+....+...++..|.....+-
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~l 72 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEVVDFAALRDELAAEGKKL 72 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHhccHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999998888998877777776655566777777776665543
No 86
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=94.48 E-value=0.093 Score=43.15 Aligned_cols=58 Identities=22% Similarity=0.249 Sum_probs=48.9
Q ss_pred hhHHhhhccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHH
Q 041818 3 KELAAKKHSEAERRRRLRINDQYDNLRKILPNL---VKVDKASVLAKTIKTVRELQRTVRE 60 (173)
Q Consensus 3 ~~~~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~---~k~~k~sil~~ai~yi~~L~~~~~~ 60 (173)
+.+++..-+..||+|...+|..|+.||..+|.. .+.+|-.-|+.|-.||--|-..+..
T Consensus 171 ~~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~ 231 (285)
T KOG4395|consen 171 NSHRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDL 231 (285)
T ss_pred HHhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcC
Confidence 346677889999999999999999999999965 5667788899999999888776643
No 87
>PRK07334 threonine dehydratase; Provisional
Probab=94.44 E-value=0.35 Score=42.27 Aligned_cols=66 Identities=8% Similarity=0.146 Sum_probs=49.3
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV-----GGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~-----~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+-.+.|.|.+.+++|+|.+|+.+|.+.+..|.+.++.+. ++...-.|.+... +......+...|++
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-DAAHLQEVIAALRA 394 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-CHHHHHHHHHHHHH
Confidence 335999999999999999999999999999999998765 4555555555554 22344555555554
No 88
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=94.43 E-value=0.23 Score=30.58 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=36.8
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEe
Q 041818 94 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQG 139 (173)
Q Consensus 94 I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~-~rv~~~f~vk~ 139 (173)
|.+..+++||.|.+++..|.+.|..+.+..+...+ +.....|.+..
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 35678899999999999999999999777766654 66666665554
No 89
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.32 E-value=0.61 Score=32.41 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=46.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG-RIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~-rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
..+-+..+++||.|.+++..+...|+.+.+...-+..+ .-.+.|+|.-.. . ....++++|..+
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg-~-~~~~~~~~l~~L 78 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDK-K-SAPALDPIIKSL 78 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc-C-CCHHHHHHHHHH
Confidence 55666778899999999999999999999998877754 346777777653 2 234555555444
No 90
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=94.01 E-value=0.033 Score=46.00 Aligned_cols=54 Identities=28% Similarity=0.393 Sum_probs=46.3
Q ss_pred hHHhhhccHHHHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHHH
Q 041818 4 ELAAKKHSEAERRRRLRINDQYDNLRKILPN---LVKVDKASVLAKTIKTVRELQRT 57 (173)
Q Consensus 4 ~~~~~~h~~~Er~RR~~i~~~~~~L~sl~P~---~~k~~k~sil~~ai~yi~~L~~~ 57 (173)
-..+.+=|..||+|.-.+|+.|+.||.++|. ..|+.|...|.-|-+||-.|++-
T Consensus 70 ~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 70 TLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 3446677889999999999999999999994 37888999999999999988764
No 91
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=93.98 E-value=0.3 Score=33.70 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=47.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEec-cCCccHHHHHHHHHHHhc
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGF-KGNEGMVMLKRALNLVID 158 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~-~g~~~~~~l~~aL~~~l~ 158 (173)
.|.+...++||+|.++...+...|..+-+.++....+.-++-+.+-.. ++....+.+...|.++++
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~Klid 70 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQIN 70 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCcc
Confidence 567788899999999999999999888888877766544444433433 223455677777776654
No 92
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=93.96 E-value=0.41 Score=39.86 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=51.2
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~--~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
.+.+.++|++++|+...|...|.+.|..|++++-.+. +++++--.......+..+.+.+.+++..+.+.
T Consensus 7 ~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~ 77 (287)
T COG0788 7 TFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEE 77 (287)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHh
Confidence 4788999999999999999999999999999885532 34443333334443446778888888876553
No 93
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=93.96 E-value=0.055 Score=50.09 Aligned_cols=50 Identities=38% Similarity=0.536 Sum_probs=42.6
Q ss_pred hHHhhhccHHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHH
Q 041818 4 ELAAKKHSEAERRRRLRINDQYDNLRKILPN----LVKVDKASVLAKTIKTVRE 53 (173)
Q Consensus 4 ~~~~~~h~~~Er~RR~~i~~~~~~L~sl~P~----~~k~~k~sil~~ai~yi~~ 53 (173)
++++++-.-+-|-||.|=|+-|.+|..+||- .+..|||+|+.=||.|++-
T Consensus 44 ~~rkEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 44 ELRKEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred HHHhhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 3446666677899999999999999999992 3788999999999999874
No 94
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=93.93 E-value=0.34 Score=37.87 Aligned_cols=65 Identities=12% Similarity=0.223 Sum_probs=49.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP--VGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist--~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
.+.+...++||+|.++...|...|..+.+.++.. ..+...-++.+.+ +....+.|..+|.++++.
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--~~~~ieqL~kQL~KLidV 70 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--DDRTIEQLTKQLYKLVNI 70 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--CHHHHHHHHHHHHHHhHh
Confidence 5788889999999999999999999998888866 3444444454443 223378888898888764
No 95
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.86 E-value=0.86 Score=29.17 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=41.4
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~--~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
..+.+..+++||.|.+++..|.+.|+.+.+...... ++...-.|.+.... .+.+.++|..
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~----~~~~~~~L~~ 63 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN----PRPIIEDLRR 63 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC----HHHHHHHHHH
Confidence 367788999999999999999999999987754333 34555556555432 2355555543
No 96
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=93.42 E-value=0.097 Score=33.42 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=40.1
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 94 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 94 I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+-+.+.++||++.+++..|.+.|..+...+..+.++...-.|.+... ....+.+.|++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~----~l~~li~~l~~ 59 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE----VSEELLEALRA 59 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC----CCHHHHHHHHc
Confidence 34578899999999999999999998766655544555555544443 33455555554
No 97
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.34 E-value=0.67 Score=29.92 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=38.1
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 95 TLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 95 ~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~-~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
.+.-+++||-|.++++.|.+ |..|+..+....+ +.....+.++.. +....+++.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~-~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP-DREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC-CHHHHHHHHHHHHH
Confidence 46778999999999999999 9998877765543 222222333333 22445566666654
No 98
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=93.27 E-value=0.067 Score=48.43 Aligned_cols=40 Identities=38% Similarity=0.585 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHH
Q 041818 14 ERRRRLRINDQYDNLRKILPN----LVKVDKASVLAKTIKTVRE 53 (173)
Q Consensus 14 Er~RR~~i~~~~~~L~sl~P~----~~k~~k~sil~~ai~yi~~ 53 (173)
-++-|+|+|.-++.|.+|+|. .+|.||.|||.=++.|++-
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence 356789999999999999994 3899999999999999864
No 99
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=93.04 E-value=0.17 Score=47.51 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=51.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
..++|...+|+|+|..++.+|. ++..+.++|.|..+++.|++... ..-..+..++..++.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~~---~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKPG---FDRATVERDVTRVLA 691 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecCc---ccHHHHHHHHHHHHh
Confidence 6789999999999999999999 89999999999999999999832 445677777777654
No 100
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=93.00 E-value=0.87 Score=32.16 Aligned_cols=68 Identities=12% Similarity=0.196 Sum_probs=47.2
Q ss_pred CeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 90 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 90 ~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
+...|.+...++||+|.+|...+..-|..+-+.++...++.-++-+++-.. ++...+.+...|.++++
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLid 74 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLED 74 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcC
Confidence 346788899999999999999999888888777766665433333333222 34566777777776654
No 101
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=92.69 E-value=0.91 Score=29.97 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=43.0
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE-EEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 95 TLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 95 ~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~r-v~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
-+..+++||.|.+++..+...|+.+.+...-+..+. ..+.|+|.-.. ....++++|..+
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~---~~~~~~~~l~~L 63 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV---DRGDLDQLISSL 63 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc---ChHHHHHHHHHH
Confidence 345577999999999999999999999988777653 46777777663 223355555444
No 102
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=92.56 E-value=0.12 Score=45.29 Aligned_cols=44 Identities=32% Similarity=0.426 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHHHH
Q 041818 12 EAERRRRLRINDQYDNLRKILPN----LVKVDKASVLAKTIKTVRELQ 55 (173)
Q Consensus 12 ~~Er~RR~~i~~~~~~L~sl~P~----~~k~~k~sil~~ai~yi~~L~ 55 (173)
.+-|.||++-|.-|.+|..++|- .+..||++|+.-|..|||--.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~ 54 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRN 54 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHH
Confidence 45689999999999999999993 367999999999999998543
No 103
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=92.26 E-value=1.2 Score=35.28 Aligned_cols=68 Identities=9% Similarity=0.128 Sum_probs=51.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC------EEEEEEEEEeccCCccHHHHHHHHHHHhcCC
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG------RIKCVLWVQGFKGNEGMVMLKRALNLVIDRP 160 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~------rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~~ 160 (173)
+.|.+...++||+..++.+.|-+.|+.|.+.+.-+.+. .+.-.+.+.-.. +.....|+.+|..+...-
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~-~~~~~~L~~~l~~l~~eL 169 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA-SQDAANIEQAFKALCTEL 169 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC-CCCHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999998877766653 344444444443 344678888887776543
No 104
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=91.62 E-value=0.69 Score=29.57 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=41.3
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 95 TLSCEDQPELMSDLSRALRSVKGRLVRAEMVP--VGGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 95 ~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist--~~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
-+..+++||.+.++...|.+.|+.+.+..... .++....+|.+... ....+.++|++
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~----~~~~~~~~l~~ 61 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP----VPDEVLEELRA 61 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC----CCHHHHHHHHc
Confidence 45788999999999999999999997776554 35677767766542 22355555554
No 105
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=91.49 E-value=1.1 Score=42.52 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=48.9
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~--~~rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
.+.|.|.+.+++|+|.+|+.+|.+.++.|.++++.+. ++.+.-.|.+...+ ...+..|..+|+++
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~-~~~L~~l~~~L~~i 732 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN-LQVLGRVLGKLNQV 732 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC-HHHHHHHHHHHhcC
Confidence 4688999999999999999999999999999998775 45655566666552 23445555555543
No 106
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.02 E-value=1.8 Score=28.82 Aligned_cols=58 Identities=10% Similarity=0.098 Sum_probs=42.8
Q ss_pred EEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 96 LSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG-RIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 96 I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~-rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
+..+++||.|.+++..++..|+.+.+...-+..+ ...+.|+|.-. |.. ..++++|..+
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e-~~~--~~i~~~l~~l 63 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCE-CDQ--RRLDELVQLL 63 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE-cCH--HHHHHHHHHH
Confidence 4457889999999999999999999998877643 35677777766 332 2566666444
No 107
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=90.60 E-value=2.6 Score=28.82 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=53.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~--~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
..+.+....+|+.|-++++..+--|+.|...+.++. ++...--|+|.++ -+.+.|...|.++.+-
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~---R~~~lL~~QLeKl~Dv 70 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD---RSVDLLTSQLEKLYDV 70 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC---CChHHHHHHHHHHccc
Confidence 456788889999999999999999999999998888 6677777777665 5667788888777654
No 108
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.25 E-value=5 Score=27.03 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=37.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~-~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
..+.+.-+++||-|.+++++|- +..|........+ +.....+.++..++....+.+.++|.+
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKS 64 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 3577888999999999999998 5555544443322 333333444443213445566666654
No 109
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=89.18 E-value=2.1 Score=40.16 Aligned_cols=63 Identities=13% Similarity=0.207 Sum_probs=46.9
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEeccCCccHHHHHHHHH
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGNEGMVMLKRALN 154 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~-~rv~~~f~vk~~~g~~~~~~l~~aL~ 154 (173)
.+.|.|.+.+++|+|.+|+.+|.+.+..|.+.++.+.. +.+.-.|.+...+ ......|..+|+
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~-~~~L~~ii~~L~ 673 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN-YKHLLKIMLKIK 673 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC-HHHHHHHHHHHh
Confidence 57899999999999999999999999999999988774 5555455555542 233444444444
No 110
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=89.01 E-value=2 Score=40.49 Aligned_cols=64 Identities=5% Similarity=0.127 Sum_probs=47.7
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~-~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
.+.|.|.+.+++|+|.+|+.++.+.+..|.++++.+.. +.+.-.|.+...+ -.....|-.+|++
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~-~~~L~~i~~~Lr~ 690 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD-RVHLANIMRKIRV 690 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC-HHHHHHHHHHHhC
Confidence 57889999999999999999999999999999987775 4545556665552 2344455555543
No 111
>PRK11899 prephenate dehydratase; Provisional
Probab=88.92 E-value=3.7 Score=34.39 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=49.9
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE-EEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~r-v~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
...+-+..+++||.|.++|.++...|+...+...-+..+. ..+.|++.-. |......++.||..+
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~e-g~~~d~~v~~aL~~l 259 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIE-GHPEDRNVALALEEL 259 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEE-CCCCCHHHHHHHHHH
Confidence 3555566688999999999999999999999998888554 5778888776 444445667777665
No 112
>PRK06382 threonine dehydratase; Provisional
Probab=87.79 E-value=4.1 Score=35.60 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=46.7
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEE----ee-CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV----PV-GGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~is----t~-~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+..+++.|.-+++||.|.+++..|.+.+..|++.... .. .+....+|.+... +......|.+.|.+
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-~~~~~~~v~~~L~~ 398 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-GQDHLDRILNALRE 398 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-CHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999887764 22 2345556666554 22223355555543
No 113
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.49 E-value=4.5 Score=29.33 Aligned_cols=62 Identities=10% Similarity=0.085 Sum_probs=43.5
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE-EEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~r-v~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
+.+-+..+++||.|.++|..+...|+.+.+...-+..+. .-+.|+|.-.. .. +.+..+|..+
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg-~~--~~~~~aL~~L 104 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEV-HR--SDLLQLISSL 104 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEe-CH--HHHHHHHHHH
Confidence 455556688999999999999999999999988777433 45666666552 22 1355555443
No 114
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=86.33 E-value=6.9 Score=33.71 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=47.4
Q ss_pred CCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 88 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV-----GGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 88 ~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~-----~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
.+..+.+.+.-+++||.|.++++.+.+.|..|++...... .+.....+.++.. +....+.|.++|.+
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-GKEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-CHHHHHHHHHHHHH
Confidence 3556799999999999999999999999999988765421 2455555655554 22344466666644
No 115
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=85.20 E-value=6.9 Score=32.85 Aligned_cols=65 Identities=14% Similarity=0.153 Sum_probs=50.2
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE-EEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~r-v~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
...+-+..+++||.|+++|..+...|++......-...+. ..+.|+|.-. |+.....+++||..+
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~e-g~~~~~~v~~AL~el 259 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIE-GHIDDPLVKEALEEL 259 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEe-cCcCcHhHHHHHHHH
Confidence 4566667779999999999999999999999888888755 4666666655 555556777777665
No 116
>PRK08198 threonine dehydratase; Provisional
Probab=84.56 E-value=9 Score=33.32 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=47.0
Q ss_pred CCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 88 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV-----GGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 88 ~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~-----~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
.+..+.+.|.-+++||.|.++++.+-+.|..|+..+.... .+.+...+.++.. +....+.|.++|.+
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~-~~~~~~~l~~~L~~ 395 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETR-GPEHIEEILDALRD 395 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeC-CHHHHHHHHHHHHH
Confidence 3557899999999999999999999999998888776542 2445555555543 22344555555543
No 117
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=84.45 E-value=5.6 Score=23.96 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=30.8
Q ss_pred EEEEEcc---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEec
Q 041818 93 KVTLSCE---DQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGF 140 (173)
Q Consensus 93 ~I~I~c~---~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~ 140 (173)
.|.+.+. +.+|.+.+++++|.+.++.+...+.+. .+ .-.+|.+...
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~-~~-~~i~~~v~~~ 50 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS-SE-VNISFVVDED 50 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC-Cc-eeEEEEEeHH
Confidence 3555443 578899999999999999987665533 22 3334555544
No 118
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=83.37 E-value=1.1 Score=34.94 Aligned_cols=64 Identities=22% Similarity=0.342 Sum_probs=54.3
Q ss_pred CeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 90 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 90 ~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
..+.|.....++||+.-.+.++.-+.|-.++.+.++.+|+.+.-+..+.++.++. ..|+++|..
T Consensus 4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~dav--~~le~~l~~ 67 (176)
T COG2716 4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSWDAV--TLLEATLPL 67 (176)
T ss_pred cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCHHHH--HHHHHHhhc
Confidence 3578899999999999999999999999999999999999998888888886443 366666543
No 119
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=82.09 E-value=9 Score=23.68 Aligned_cols=37 Identities=5% Similarity=0.006 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEec
Q 041818 100 DQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGF 140 (173)
Q Consensus 100 ~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~ 140 (173)
..+|+..+++++|++.|+.+..... +. .--+|.+...
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t---~~-~~is~~v~~~ 48 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT---SE-NSVTLYLDDS 48 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec---CC-CEEEEEEehh
Confidence 5688999999999999998876642 22 3345555554
No 120
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=81.55 E-value=7.1 Score=36.86 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=46.4
Q ss_pred CeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEE-EEEEEEEeccCCccHHHHHHHHHH
Q 041818 90 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRI-KCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 90 ~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv-~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
-.+.|.|...+++|+|.+|+++|-+.+..|.+.+..+.++.+ .-.|.+... +......|..+|++
T Consensus 626 f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~-n~~~L~~i~~~l~~ 691 (701)
T COG0317 626 YPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK-NLNHLGRVLARLKQ 691 (701)
T ss_pred eEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC-cHHHHHHHHHHHhc
Confidence 467889999999999999999999999999999988875444 333444443 22334444444443
No 121
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=80.61 E-value=13 Score=32.56 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=48.3
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE-EEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~r-v~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
..+-+..+++||.|.++|..+...|+.......-+..+. ..+.|++.-. |......++++|..+
T Consensus 298 tsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e-g~~~d~~~~~aL~~l 362 (386)
T PRK10622 298 TTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ-ANLRSAEMQKALKEL 362 (386)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe-CCCCCHHHHHHHHHH
Confidence 334455578999999999999999999999888877655 6778887776 444445667776655
No 122
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=80.40 E-value=11 Score=23.27 Aligned_cols=46 Identities=9% Similarity=-0.001 Sum_probs=29.9
Q ss_pred EEEEEc---cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEec
Q 041818 93 KVTLSC---EDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGF 140 (173)
Q Consensus 93 ~I~I~c---~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~ 140 (173)
.|.+.+ .+.+|++.+++++|.+.|+.+.-.+.++ .+ .--+|.+...
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~-s~-~~is~~v~~~ 51 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS-SE-RNISAVIDED 51 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC-cc-cEEEEEEeHH
Confidence 345555 3568999999999999999985554433 22 3334444443
No 123
>PRK08526 threonine dehydratase; Provisional
Probab=80.39 E-value=14 Score=32.34 Aligned_cols=67 Identities=13% Similarity=0.235 Sum_probs=47.9
Q ss_pred CCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE-----EEEEEEEEeccCCccHHHHHHHHHH
Q 041818 88 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-----IKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 88 ~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~r-----v~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
.+..+.+.+.-+++||-|.+++..+-+.+.+|+.......... +...+.++.. +....+.|.++|.+
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK-GKEHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC-CHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999998887554332 3333444433 33455566666643
No 124
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=80.03 E-value=15 Score=37.77 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=52.2
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEE---EEee--CCEEEEEEEEEeccCC-ccH----HHHHHHHHHHhc
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAE---MVPV--GGRIKCVLWVQGFKGN-EGM----VMLKRALNLVID 158 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~---ist~--~~rv~~~f~vk~~~g~-~~~----~~l~~aL~~~l~ 158 (173)
++.+.+++.....+..|++++-.|+++|+.|+... +.+- ....++.|.+....+. ... +.+.+++..+..
T Consensus 487 ~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v~~ 566 (1528)
T PF05088_consen 487 PGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAVWN 566 (1528)
T ss_pred CCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHHhc
Confidence 45799999998899999999999999999998876 3432 2356899999987653 333 444555555543
Q ss_pred C
Q 041818 159 R 159 (173)
Q Consensus 159 ~ 159 (173)
.
T Consensus 567 g 567 (1528)
T PF05088_consen 567 G 567 (1528)
T ss_pred C
Confidence 3
No 125
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.80 E-value=0.61 Score=31.46 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=33.4
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEE
Q 041818 94 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCV 134 (173)
Q Consensus 94 I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~--~~rv~~~ 134 (173)
|+++...||-+++++.-||..|+..|.+|.|... +++--.+
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEv 45 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEV 45 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEE
Confidence 5778888999999999999999999999999643 4444333
No 126
>PRK11898 prephenate dehydratase; Provisional
Probab=78.75 E-value=13 Score=31.04 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=45.2
Q ss_pred EEEEEEccC-CCCHHHHHHHHHHhCCCeEEEEEEEeeCCE-EEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 92 LKVTLSCED-QPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 92 v~I~I~c~~-r~glL~~Il~aLeelgL~Vv~a~ist~~~r-v~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
..+-+..++ +||.|.++|..+...|+.+.+...-...++ ..+.|+|.-. |......++++|..+
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~e-g~~~~~~~~~al~~L 262 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVE-GHIDDVLVAEALKEL 262 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEE-ccCCCHHHHHHHHHH
Confidence 445556655 599999999999999999999998877543 4567777765 344434556665544
No 127
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.96 E-value=23 Score=23.39 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=37.6
Q ss_pred EEEEE---ccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 93 KVTLS---CEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 93 ~I~I~---c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
.|.|. ....+|++.+|+.+|.+.|+.|-.... +. .--+|.+.... ......+..+|.+.+++
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~---s~-~~iSftv~~~d-~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT---SE-ISVALTLDNTG-STSDQLLTQALLKELSQ 67 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee---cC-CEEEEEEeccc-cchhHHHHHHHHHHHHh
Confidence 45552 356799999999999999988755532 22 44556566543 12223454455555544
No 128
>PLN02317 arogenate dehydratase
Probab=73.89 E-value=30 Score=30.41 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=45.9
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE---------------EEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR---------------IKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~r---------------v~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
..|-+.-+++||.|.++|.++...|+...+...-...+. .-+.|+|.-. +......++.+|..+
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~e-g~~~d~~~~~aL~~L 362 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFE-ASMADPRAQNALAHL 362 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEE-cCcCCHHHHHHHHHH
Confidence 445555577999999999999999999999887776544 4677877765 333334555555444
No 129
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=70.48 E-value=24 Score=22.12 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=22.8
Q ss_pred EEEEEcc---CCCCHHHHHHHHHHhCCCeEE
Q 041818 93 KVTLSCE---DQPELMSDLSRALRSVKGRLV 120 (173)
Q Consensus 93 ~I~I~c~---~r~glL~~Il~aLeelgL~Vv 120 (173)
.|.+.+. ..||++.+++.+|.+.|+.+.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 3445553 579999999999999999995
No 130
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.20 E-value=28 Score=22.89 Aligned_cols=53 Identities=9% Similarity=0.006 Sum_probs=34.9
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccC---CccHHHHHHHHHH
Q 041818 99 EDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKG---NEGMVMLKRALNL 155 (173)
Q Consensus 99 ~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g---~~~~~~l~~aL~~ 155 (173)
...+|++.+++++|.+.|+.|-.... +. .--+|.+..... +...++|.+.|++
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~---s~-~~isftv~~~~~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST---SE-TNVTVSLDPDPNGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeCcccccchHHHHHHHHHHHh
Confidence 45689999999999999988755532 22 445666665541 1245566666655
No 131
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=70.07 E-value=19 Score=27.90 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=48.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhcCC
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDRP 160 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~~ 160 (173)
.+.+-..+.||.|..++..+-..|+.+-+..+....+--++-..+-...+....+.+...|+.+++.+
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~ 73 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVL 73 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccce
Confidence 45566678999999999999999988877776666543333333333323366788888888888764
No 132
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.33 E-value=19 Score=22.29 Aligned_cols=27 Identities=4% Similarity=-0.054 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 041818 100 DQPELMSDLSRALRSVKGRLVRAEMVP 126 (173)
Q Consensus 100 ~r~glL~~Il~aLeelgL~Vv~a~ist 126 (173)
+.+|++.+++++|.+.|+++.-.+.++
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 478999999999999999985554433
No 133
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=68.21 E-value=1.1 Score=41.79 Aligned_cols=57 Identities=26% Similarity=0.361 Sum_probs=47.5
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 041818 6 AAKKHSEAERRRRLRINDQYDNLRKILPNL-----VKVDKASVLAKTIKTVRELQRTVREQK 62 (173)
Q Consensus 6 ~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~-----~k~~k~sil~~ai~yi~~L~~~~~~l~ 62 (173)
....|+.+|.+||.+++-.|..|.++.-+. -|+.+..-++.++.||..++++...++
T Consensus 651 r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~ 712 (856)
T KOG3582|consen 651 RPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQ 712 (856)
T ss_pred CcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccc
Confidence 356799999999999999999999998754 456677779999999999988766554
No 134
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=66.53 E-value=33 Score=22.27 Aligned_cols=31 Identities=0% Similarity=-0.069 Sum_probs=24.2
Q ss_pred EEEEEc---cCCCCHHHHHHHHHHhCCCeEEEEE
Q 041818 93 KVTLSC---EDQPELMSDLSRALRSVKGRLVRAE 123 (173)
Q Consensus 93 ~I~I~c---~~r~glL~~Il~aLeelgL~Vv~a~ 123 (173)
.|.+.+ .+.+|++.+++.+|.+.|+.+....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 455533 4578999999999999999986654
No 135
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=64.58 E-value=8.5 Score=24.61 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=26.7
Q ss_pred CeEEEEEEcc----CCCCHHHHHHHHHHhCCCeEEEEE
Q 041818 90 GMLKVTLSCE----DQPELMSDLSRALRSVKGRLVRAE 123 (173)
Q Consensus 90 ~~v~I~I~c~----~r~glL~~Il~aLeelgL~Vv~a~ 123 (173)
+...|.|.++ +.||++.++..+|.+.|+.|...+
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 3456677776 479999999999999999987666
No 136
>PRK14645 hypothetical protein; Provisional
Probab=64.47 E-value=52 Score=25.08 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEec-cCC---ccHHHHHHHHHHHhcC
Q 041818 106 SDLSRALRSVKGRLVRAEMVPVGG-RIKCVLWVQGF-KGN---EGMVMLKRALNLVIDR 159 (173)
Q Consensus 106 ~~Il~aLeelgL~Vv~a~ist~~~-rv~~~f~vk~~-~g~---~~~~~l~~aL~~~l~~ 159 (173)
.-+-..++++|++++...+..-++ +++-+| +... .|+ .+...+-++|..+|+.
T Consensus 13 ~li~~~~~~~G~elvdve~~~~~~~~ilrV~-ID~~~~~~v~lddC~~vSr~is~~LD~ 70 (154)
T PRK14645 13 QLAEGALEPLGYEVLEVQVQRSGGKRIVLVR-IDRKDEQPVTVEDLERASRALEAELDR 70 (154)
T ss_pred HHHHHHHHHcCCEEEEEEEEeCCCCeEEEEE-EECCCCCCcCHHHHHHHHHHHHHHhcc
Confidence 334556789999999999987764 555444 4432 233 3457788888888874
No 137
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=63.93 E-value=28 Score=27.19 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=48.3
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEE--EEeeCCEEEEEEEEEecc---CCccHHHHHHHHHHHhcC
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAE--MVPVGGRIKCVLWVQGFK---GNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~--ist~~~rv~~~f~vk~~~---g~~~~~~l~~aL~~~l~~ 159 (173)
..-+.+++...+|||++-++.+.|..+|+.+-+.. ...-.+.--.-|++...- .+.....|++++.++.+.
T Consensus 90 ~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al~~~ 165 (176)
T COG2716 90 PAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEALCDE 165 (176)
T ss_pred CceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHHHHh
Confidence 34688999999999999999999999998764433 333334334444444321 235567888888777654
No 138
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=63.44 E-value=37 Score=21.83 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=37.5
Q ss_pred EEEEEc---cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 93 KVTLSC---EDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 93 ~I~I~c---~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
.|.+.. .+.+|++.+++++|.+.++.+.-.+.++.+ .-.+|.+...........+.+.+...++
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~--~~isf~v~~~d~~~~~~~l~~~~~~~~~ 69 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQASSE--HSISFVVDESDADKALEALEEEFALEIK 69 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCc--ceEEEEEeHHHHHHHHHHHHHHHHhhhh
Confidence 455532 357899999999999999998655543222 2234555544322334455555544443
No 139
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=62.93 E-value=33 Score=25.37 Aligned_cols=38 Identities=11% Similarity=0.244 Sum_probs=33.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR 130 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~r 130 (173)
.|.+..+++||-|..++.+|.+.|+.+-..++.-.|++
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dF 42 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDF 42 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCc
Confidence 57888999999999999999999999888887776664
No 140
>PRK14639 hypothetical protein; Provisional
Probab=62.91 E-value=62 Score=24.18 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=37.3
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC--ccHHHHHHHHHHHhcC
Q 041818 108 LSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDR 159 (173)
Q Consensus 108 Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~--~~~~~l~~aL~~~l~~ 159 (173)
+-.+++++|++++...+...++.-+-.+++...+|- .+...+-++|..+|+.
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~ 56 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDV 56 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 345788999999999999887655445555544332 4557788888888875
No 141
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=62.81 E-value=4.3 Score=31.09 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC
Q 041818 13 AERRRRLRINDQYDNLRKILPNL 35 (173)
Q Consensus 13 ~Er~RR~~i~~~~~~L~sl~P~~ 35 (173)
.||.|-.++++.+.-|++|+|..
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgs 51 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGS 51 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCC
Confidence 58888899999999999999965
No 142
>PRK14638 hypothetical protein; Provisional
Probab=62.44 E-value=51 Score=24.91 Aligned_cols=51 Identities=10% Similarity=0.093 Sum_probs=35.3
Q ss_pred HHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC---ccHHHHHHHHHHHhcC
Q 041818 109 SRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN---EGMVMLKRALNLVIDR 159 (173)
Q Consensus 109 l~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~---~~~~~l~~aL~~~l~~ 159 (173)
-..++++|++++...+...++...-.+++...+|. .+...+-.+|..+|+.
T Consensus 15 ~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~ 68 (150)
T PRK14638 15 ERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDR 68 (150)
T ss_pred HHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhcc
Confidence 34568999999999999876543334444444453 3457778888888874
No 143
>PRK14630 hypothetical protein; Provisional
Probab=61.99 E-value=51 Score=24.73 Aligned_cols=54 Identities=4% Similarity=0.011 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEeccCC--ccHHHHHHHHHHHhcCC
Q 041818 106 SDLSRALRSVKGRLVRAEMVPVGG-RIKCVLWVQGFKGN--EGMVMLKRALNLVIDRP 160 (173)
Q Consensus 106 ~~Il~aLeelgL~Vv~a~ist~~~-rv~~~f~vk~~~g~--~~~~~l~~aL~~~l~~~ 160 (173)
.-+-..++++|++++...+...++ +++- +++...+|- .+...+-++|...++.+
T Consensus 12 ~li~~~~~~~G~eLvdve~~~~~~~~~lr-V~Id~~~gV~idDC~~vSr~i~~~ld~~ 68 (143)
T PRK14630 12 NLIKNVTDRLGIEIIEINTFRNRNEGKIQ-IVLYKKDSFGVDTLCDLHKMILLILEAV 68 (143)
T ss_pred HHHHHHHHHcCCEEEEEEEEecCCCcEEE-EEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 334456899999999999988655 4444 444444332 45577777887777763
No 144
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=61.78 E-value=87 Score=25.50 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=32.3
Q ss_pred CeEEEEEEccCCCC--HHHHHHHHHHhCCCeEEEEEEEeeC
Q 041818 90 GMLKVTLSCEDQPE--LMSDLSRALRSVKGRLVRAEMVPVG 128 (173)
Q Consensus 90 ~~v~I~I~c~~r~g--lL~~Il~aLeelgL~Vv~a~ist~~ 128 (173)
..+.+.+.|.+.++ +...+++.|++.++.+.+.++...+
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~ 181 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQ 181 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecC
Confidence 35788999988665 5889999999999999999987663
No 145
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.85 E-value=39 Score=21.22 Aligned_cols=30 Identities=3% Similarity=-0.150 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 041818 100 DQPELMSDLSRALRSVKGRLVRAEMVPVGG 129 (173)
Q Consensus 100 ~r~glL~~Il~aLeelgL~Vv~a~ist~~~ 129 (173)
+.+|++.+++.+|.+.|+.|.-.+..+.+.
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~ 41 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKV 41 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccc
Confidence 457899999999999999986665544443
No 146
>PRK14640 hypothetical protein; Provisional
Probab=60.70 E-value=57 Score=24.65 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=36.0
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC--ccHHHHHHHHHHHhcC
Q 041818 108 LSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDR 159 (173)
Q Consensus 108 Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~--~~~~~l~~aL~~~l~~ 159 (173)
+-..++++|++++...+...++.-.-.+++...+|- .+...+-++|..+|+.
T Consensus 12 i~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~ 65 (152)
T PRK14640 12 LEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDV 65 (152)
T ss_pred HHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 344568999999999998876543334444444342 4557888899888875
No 147
>PRK14637 hypothetical protein; Provisional
Probab=60.68 E-value=70 Score=24.23 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=42.4
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE-EEEEEEEEeccCC--ccHHHHHHHHHHHhcC
Q 041818 99 EDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGN--EGMVMLKRALNLVIDR 159 (173)
Q Consensus 99 ~~r~glL~~Il~aLeelgL~Vv~a~ist~~~r-v~~~f~vk~~~g~--~~~~~l~~aL~~~l~~ 159 (173)
.+.-|....+-.+++++|++++...+...++. ++-+| +...+|- .+...+-++|..+|+.
T Consensus 5 ~~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~-ID~~~gV~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 5 KKDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAV-IYSAGGVGLDDCARVHRILVPRLEA 67 (151)
T ss_pred cccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEE-EECCCCCCHHHHHHHHHHHHHHhcc
Confidence 34567888888899999999999999988764 55444 4433331 3456777777777753
No 148
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=60.20 E-value=77 Score=27.76 Aligned_cols=38 Identities=8% Similarity=0.110 Sum_probs=31.5
Q ss_pred CCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEE
Q 041818 88 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV 125 (173)
Q Consensus 88 ~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~is 125 (173)
.+..+.+.+.-+++||-|.++++.+-+.+.+|+....-
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~ 359 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT 359 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 35679999999999999999999777676688776655
No 149
>PRK12483 threonine dehydratase; Reviewed
Probab=59.32 E-value=83 Score=28.75 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=30.0
Q ss_pred CCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 041818 88 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP 126 (173)
Q Consensus 88 ~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist 126 (173)
.+..+.+.|.-+++||-|.+++..|-+. +|+..+...
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~ 378 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRY 378 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEe
Confidence 3567899999999999999999999887 666555543
No 150
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=58.85 E-value=59 Score=25.10 Aligned_cols=50 Identities=12% Similarity=0.230 Sum_probs=39.1
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEEEec
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV---GGRIKCVLWVQGF 140 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~---~~rv~~~f~vk~~ 140 (173)
.+.+.|...++||-|..+++.|-+.|..+++.-=+.. |+++-.-+.+...
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d 57 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGD 57 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEec
Confidence 4567788899999999999999999988877665555 7776665555554
No 151
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=58.79 E-value=47 Score=21.51 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=31.6
Q ss_pred EEEEEEccC-CCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecc
Q 041818 92 LKVTLSCED-QPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFK 141 (173)
Q Consensus 92 v~I~I~c~~-r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~ 141 (173)
+.+.+.... ...+++++.+.+ .....+++++|..+++..+-.+.+.-..
T Consensus 5 ~~l~f~g~~~~~piis~l~~~~-~v~~nIl~g~i~~i~~~~~G~l~l~l~g 54 (76)
T PF09383_consen 5 VRLTFTGNSAQEPIISQLIREF-GVDVNILHGNIEEIQGTPFGILILELPG 54 (76)
T ss_dssp EEEEEESCSSSSCHHHHHHHHH-T-EEEEEEEEEEEETTEEEEEEEEEEES
T ss_pred EEEEEcCCCcCchHHHHHHHHh-CCCEEEEEEEeEEcCCeeEEEEEEEEEC
Confidence 344444433 234555544432 2345589999999999999999998873
No 152
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=58.49 E-value=37 Score=27.66 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=43.8
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+.|.++|.+..|+ +...+.+++ .|.+.+++++...|++ .||..++.+...|..
T Consensus 186 ~~l~~H~Hn~~GlA~AN~laAi~-aGa~~vd~s~~GlG~~----------aGN~~~E~lv~~L~~ 239 (263)
T cd07943 186 TPVGFHGHNNLGLAVANSLAAVE-AGATRIDGSLAGLGAG----------AGNTPLEVLVAVLER 239 (263)
T ss_pred ceEEEEecCCcchHHHHHHHHHH-hCCCEEEeecccccCC----------cCCccHHHHHHHHHh
Confidence 5789999999997 888888886 6999999999999986 477777777766643
No 153
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=58.45 E-value=44 Score=30.13 Aligned_cols=50 Identities=12% Similarity=-0.005 Sum_probs=39.2
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEE-E-EEEEEEec
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRI-K-CVLWVQGF 140 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv-~-~~f~vk~~ 140 (173)
.+.|-++..+.+|.|.++|..++..|+.+.+...-...+.. . ..|+|.-.
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~E 82 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVE 82 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEE
Confidence 45566666889999999999999999999999887765433 3 56777765
No 154
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=58.33 E-value=80 Score=28.58 Aligned_cols=65 Identities=11% Similarity=0.033 Sum_probs=40.3
Q ss_pred CCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 88 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG-RIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 88 ~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~-rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
.+..+.+.|.-+++||.|.+++++|-. ..|+..+....+. .....+.++.. +....+.|.++|.+
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~-~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLS-NPQERQEILARLND 387 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeC-CHHHHHHHHHHHHH
Confidence 356899999999999999999999987 3555555443332 22222233332 33445556665543
No 155
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=57.88 E-value=32 Score=28.41 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=44.1
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+.|.++|.+..|+ +...+.+++ .|.+.+++++...|++ .||..++.+...|..
T Consensus 193 ~~l~~H~Hnd~GlA~aN~laA~~-aGa~~vd~sv~GlG~~----------aGN~~~E~l~~~L~~ 246 (275)
T cd07937 193 LPIHLHTHDTSGLAVATYLAAAE-AGVDIVDTAISPLSGG----------TSQPSTESMVAALRG 246 (275)
T ss_pred CeEEEEecCCCChHHHHHHHHHH-hCCCEEEEecccccCC----------cCChhHHHHHHHHHc
Confidence 6789999999997 888888886 6999999999999986 477777777777654
No 156
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=57.69 E-value=57 Score=29.19 Aligned_cols=66 Identities=9% Similarity=0.071 Sum_probs=44.6
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEeccC-CccHHHHHHHHHHH
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG-RIKCVLWVQGFKG-NEGMVMLKRALNLV 156 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~-rv~~~f~vk~~~g-~~~~~~l~~aL~~~ 156 (173)
...|-++..+.||.|.++|..+...|+.+.+...-...+ .-...|+|.-... ...+..+-+.|.+.
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~ 83 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQK 83 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHh
Confidence 355566668899999999999999999999988766543 3356677776532 12333444444443
No 157
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=57.38 E-value=47 Score=21.05 Aligned_cols=27 Identities=15% Similarity=0.034 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHhCCCeEEEEEEEee
Q 041818 101 QPELMSDLSRALRSVKGRLVRAEMVPV 127 (173)
Q Consensus 101 r~glL~~Il~aLeelgL~Vv~a~ist~ 127 (173)
.+|++.+++++|.+.|+.+.-.+.++.
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s 40 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMR 40 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCC
Confidence 678999999999999999866554443
No 158
>PRK09224 threonine dehydratase; Reviewed
Probab=56.35 E-value=1.1e+02 Score=27.68 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=39.6
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG-RIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~-rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+..+.+.|.-+++||-|.++++.|- +..|+..+....+. .....+.++..+.....+.|.++|.+
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~~~~~i~~~L~~ 391 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQEERAEIIAQLRA 391 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhhHHHHHHHHHHH
Confidence 5689999999999999999999998 45555555443322 22222333333211225566666644
No 159
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=56.27 E-value=3.3 Score=38.85 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=45.3
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 041818 6 AAKKHSEAERRRRLRINDQYDNLRKILPNL-----VKVDKASVLAKTIKTVRELQRTVREQKA 63 (173)
Q Consensus 6 ~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~-----~k~~k~sil~~ai~yi~~L~~~~~~l~~ 63 (173)
.+..|+.++|++|..+.++|..|-.|.|.. .+..+++||. +.|+.+++.-+.+..
T Consensus 787 v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e 846 (856)
T KOG3582|consen 787 VSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTE 846 (856)
T ss_pred eecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHh
Confidence 356788999999999999999999999932 5678899998 788888887666544
No 160
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.10 E-value=44 Score=20.36 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=23.9
Q ss_pred EEEEEcc---CCCCHHHHHHHHHHhCCCeEEEEEE
Q 041818 93 KVTLSCE---DQPELMSDLSRALRSVKGRLVRAEM 124 (173)
Q Consensus 93 ~I~I~c~---~r~glL~~Il~aLeelgL~Vv~a~i 124 (173)
.|.+.+. +.++++.+++.+|.+.|+.+.-.+.
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 3444443 5689999999999999998855544
No 161
>PRK14633 hypothetical protein; Provisional
Probab=55.90 E-value=84 Score=23.70 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=36.7
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC--ccHHHHHHHHHHHhcC
Q 041818 108 LSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDR 159 (173)
Q Consensus 108 Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~--~~~~~l~~aL~~~l~~ 159 (173)
+-.+++++|++++...+..-++.++-+|+ ...+|- .+...+-++|..+|+.
T Consensus 10 v~p~~~~~G~eL~dve~~~~~~~~lrV~I-D~~~Gv~lddC~~vSr~i~~~LD~ 62 (150)
T PRK14633 10 VEPITADLGYILWGIEVVGSGKLTIRIFI-DHENGVSVDDCQIVSKEISAVFDV 62 (150)
T ss_pred HHHHHHHCCCEEEEEEEEeCCCcEEEEEE-eCCCCCCHHHHHHHHHHHHHHhcc
Confidence 44567899999999999887776554444 333332 4567888899888885
No 162
>PRK14632 hypothetical protein; Provisional
Probab=55.80 E-value=72 Score=24.70 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=34.0
Q ss_pred HHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC--ccHHHHHHHHHHHhcC
Q 041818 110 RALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDR 159 (173)
Q Consensus 110 ~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~--~~~~~l~~aL~~~l~~ 159 (173)
.+++++|++++...+...+.+++-+| +...+|- .+...+-++|..+|+.
T Consensus 16 pv~~~~G~eLvdve~~~~~~~~lrV~-ID~~~GV~ldDC~~vSr~is~~LD~ 66 (172)
T PRK14632 16 PFLASLGLELWGIELSYGGRTVVRLF-VDGPEGVTIDQCAEVSRHVGLALEV 66 (172)
T ss_pred HHHHHCCCEEEEEEEEeCCCcEEEEE-EECCCCCCHHHHHHHHHHHHHHhcc
Confidence 35689999999999987555555444 4433332 4567888889888874
No 163
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=55.15 E-value=27 Score=29.15 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=46.1
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEE--EEEEEeccCCccHHHHHHHHHHHh
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKC--VLWVQGFKGNEGMVMLKRALNLVI 157 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~--~f~vk~~~g~~~~~~l~~aL~~~l 157 (173)
.-.|.+...+.||++.+|..+|..-|..|-+.-+.-..+..+. ++.+++.+ ..++..+++|..+.
T Consensus 77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd--~VveQa~rQiedlV 143 (309)
T KOG2663|consen 77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTD--GVVEQARRQIEDLV 143 (309)
T ss_pred ceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccH--HHHHHHHHHHHHhh
Confidence 3467777789999999999999999988877766666665555 67677664 34445555555443
No 164
>PRK00907 hypothetical protein; Provisional
Probab=54.77 E-value=70 Score=22.25 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=44.8
Q ss_pred CeEEEEEEccCCCCHHHHHHHHHHhCCC----eEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 90 GMLKVTLSCEDQPELMSDLSRALRSVKG----RLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 90 ~~v~I~I~c~~r~glL~~Il~aLeelgL----~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+++-|+|....++++...|++.++.+.- ..+...-|+.|.+.--++.+.+. +.+..+.|-++|.+
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at-s~eQld~iY~~L~~ 84 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE-SREQYDAAHQALRD 84 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC-CHHHHHHHHHHHhh
Confidence 3588999999999999999999997753 34455557777766666666555 23445555555543
No 165
>PRK14646 hypothetical protein; Provisional
Probab=54.66 E-value=93 Score=23.63 Aligned_cols=54 Identities=7% Similarity=0.127 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccC-C---ccHHHHHHHHHHHhcC
Q 041818 106 SDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKG-N---EGMVMLKRALNLVIDR 159 (173)
Q Consensus 106 ~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g-~---~~~~~l~~aL~~~l~~ 159 (173)
.-+-..++++|++++...+..-++...-.+++...+| . .+...+-++|..+|+.
T Consensus 11 ~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~ 68 (155)
T PRK14646 11 ILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIEN 68 (155)
T ss_pred HHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCc
Confidence 3445567899999999999987654433444444332 3 3457788888888874
No 166
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=54.18 E-value=41 Score=19.40 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHhCCCeEEEEEEE
Q 041818 101 QPELMSDLSRALRSVKGRLVRAEMV 125 (173)
Q Consensus 101 r~glL~~Il~aLeelgL~Vv~a~is 125 (173)
.+|.+.+++++|.+.++.+.....+
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 6899999999999999988666543
No 167
>PRK08639 threonine dehydratase; Validated
Probab=53.69 E-value=1.1e+02 Score=26.82 Aligned_cols=38 Identities=8% Similarity=0.130 Sum_probs=29.6
Q ss_pred CCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEE
Q 041818 88 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV 125 (173)
Q Consensus 88 ~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~is 125 (173)
.+..+.+.+.-+++||-|.++++.+-+.+-+|+..+.-
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~ 370 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYL 370 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 45689999999999999999999555555477665543
No 168
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=52.83 E-value=65 Score=26.29 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=43.9
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
+.|.++|.+..|+ +...+.+++ .|.+.+++++..+|++ .||..++.|...|...
T Consensus 190 i~l~~H~Hn~~GlA~An~laAi~-aG~~~iD~s~~GlG~~----------aGN~~tE~lv~~L~~~ 244 (268)
T cd07940 190 VPISVHCHNDLGLAVANSLAAVE-AGARQVECTINGIGER----------AGNAALEEVVMALKTR 244 (268)
T ss_pred eeEEEEecCCcchHHHHHHHHHH-hCCCEEEEEeeccccc----------cccccHHHHHHHHHhc
Confidence 7889999999997 888888886 5999999999999942 3777777777766544
No 169
>PRK14647 hypothetical protein; Provisional
Probab=52.78 E-value=1e+02 Score=23.47 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=36.1
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC--ccHHHHHHHHHHHhcC
Q 041818 108 LSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDR 159 (173)
Q Consensus 108 Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~--~~~~~l~~aL~~~l~~ 159 (173)
+-.+++++|++++...+..-++...-.+++...+|- .+...+-++|..+|+.
T Consensus 14 i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD~ 67 (159)
T PRK14647 14 AEQVLSSLGLELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDV 67 (159)
T ss_pred HHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHcc
Confidence 344578999999999999877644334445444332 4557788888888875
No 170
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=52.05 E-value=79 Score=24.87 Aligned_cols=59 Identities=17% Similarity=0.339 Sum_probs=39.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee-CC-EEEEEEEEEeccCCccHHHHHHHHH
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV-GG-RIKCVLWVQGFKGNEGMVMLKRALN 154 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~-~~-rv~~~f~vk~~~g~~~~~~l~~aL~ 154 (173)
-+.|...++||+|.++...+.++|-.++.+.--.. +| ..+-.+.+++. .+...|.+.|.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi---~d~e~l~~~lk 64 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGI---DDFEKLLERLK 64 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCC---CCHHHHHHHhh
Confidence 46778889999999999999999999988873333 33 34444444433 44455555544
No 171
>PRK06349 homoserine dehydrogenase; Provisional
Probab=51.82 E-value=66 Score=28.37 Aligned_cols=33 Identities=9% Similarity=0.127 Sum_probs=29.0
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEE
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAE 123 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ 123 (173)
.++|++...++||+|.+|...|.+.+..+.+..
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~ 380 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESIL 380 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEE
Confidence 588999999999999999999999998876554
No 172
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.74 E-value=53 Score=19.94 Aligned_cols=51 Identities=10% Similarity=-0.052 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 100 DQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 100 ~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
+.++++.+++++|.+.++.+--.+.+..+ .--.|.+...+ ...+.+.|.+.
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~~~----~~~~~~~Lh~~ 63 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAEDD----GWAAVKAVHDE 63 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHHH----HHHHHHHHHHH
Confidence 46899999999999999888544433322 22335555442 23444444443
No 173
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=51.36 E-value=44 Score=19.99 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=21.2
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEE
Q 041818 99 EDQPELMSDLSRALRSVKGRLVRAE 123 (173)
Q Consensus 99 ~~r~glL~~Il~aLeelgL~Vv~a~ 123 (173)
.+.+|.+.+++.+|.+.++.+...+
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 11 RSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEE
Confidence 3468999999999999999986665
No 174
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.90 E-value=45 Score=19.97 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEE
Q 041818 100 DQPELMSDLSRALRSVKGRLVRAE 123 (173)
Q Consensus 100 ~r~glL~~Il~aLeelgL~Vv~a~ 123 (173)
+.++.+.+++.+|.+.++.+...+
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEE
Confidence 468999999999999999886665
No 175
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.32 E-value=27 Score=23.24 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 041818 44 LAKTIKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 44 l~~ai~yi~~L~~~~~~l~~~~~ 66 (173)
+..||+.|.-||-.|++|+.++.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 67899999999999999987655
No 176
>PRK14643 hypothetical protein; Provisional
Probab=49.52 E-value=1.2e+02 Score=23.34 Aligned_cols=52 Identities=8% Similarity=0.049 Sum_probs=35.5
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEe---ccCC---ccHHHHHHHHHHHhcC
Q 041818 108 LSRALRSVKGRLVRAEMVPVGGRIKCVLWVQG---FKGN---EGMVMLKRALNLVIDR 159 (173)
Q Consensus 108 Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~---~~g~---~~~~~l~~aL~~~l~~ 159 (173)
+-..++++|++++...+..-++...--+++.. .+|+ .+...+-++|..+|+.
T Consensus 15 ~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~ggvtldDC~~vSr~is~~LD~ 72 (164)
T PRK14643 15 VNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKPLDFDILIKANDLVSNKIDQ 72 (164)
T ss_pred HHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCCcCHHHHHHHHHHHHHHhCc
Confidence 34457899999999999987764433444532 2333 3457778888888874
No 177
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.50 E-value=47 Score=20.79 Aligned_cols=22 Identities=9% Similarity=-0.029 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHhCCCeEEE
Q 041818 100 DQPELMSDLSRALRSVKGRLVR 121 (173)
Q Consensus 100 ~r~glL~~Il~aLeelgL~Vv~ 121 (173)
..+|++.+++.+|.+.+..++.
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~ 33 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVS 33 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEE
Confidence 5789999999999988766633
No 178
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=48.93 E-value=41 Score=18.80 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=14.9
Q ss_pred hccHHHHHHHHHHHHHHHHHhc
Q 041818 9 KHSEAERRRRLRINDQYDNLRK 30 (173)
Q Consensus 9 ~h~~~Er~RR~~i~~~~~~L~s 30 (173)
+-..-=|+||+.++.++..|++
T Consensus 8 sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 8 SEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3344458888889998888874
No 179
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=48.80 E-value=60 Score=26.70 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=45.2
Q ss_pred eEEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 91 MLKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 91 ~v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
++.|.++|.+..|+ +...+.+++ .|.+.+++++..+|++ .||..++.+...|...
T Consensus 183 ~~~i~~H~Hn~~Gla~AN~laA~~-aGa~~vd~s~~G~G~~----------aGN~~~E~~v~~l~~~ 238 (266)
T cd07944 183 DIKLGFHAHNNLQLALANTLEAIE-LGVEIIDATVYGMGRG----------AGNLPTELLLDYLNNK 238 (266)
T ss_pred CceEEEEeCCCccHHHHHHHHHHH-cCCCEEEEecccCCCC----------cCcHHHHHHHHHHHHh
Confidence 47889999999997 788888885 8999999999999982 3777777777777654
No 180
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=48.29 E-value=28 Score=23.64 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 041818 44 LAKTIKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 44 l~~ai~yi~~L~~~~~~l~~~~~ 66 (173)
++.||+.|.-||.+|++|+.++.
T Consensus 13 IqqAvdtI~LLqmEieELKekn~ 35 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999987655
No 181
>PRK14644 hypothetical protein; Provisional
Probab=48.09 E-value=1.1e+02 Score=22.77 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=34.8
Q ss_pred HHHHhCCCeEEEEEEEeeCC-EEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 110 RALRSVKGRLVRAEMVPVGG-RIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 110 ~aLeelgL~Vv~a~ist~~~-rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
..++++|++++...+..-++ +++-+| +... +-.+...+-++|..+|+.
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~LrV~-Idk~-~iddC~~vSr~is~~LD~ 54 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFLEVI-LNSR-DLKDIEELTKEISDFIDN 54 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEEEEE-ECCC-CHHHHHHHHHHHHHHhcc
Confidence 46789999999999988765 445444 4322 345668888899988874
No 182
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=47.23 E-value=1.2e+02 Score=22.57 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=28.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeE--EEEEEEeeCCEEEEEE
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRL--VRAEMVPVGGRIKCVL 135 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~V--v~a~ist~~~rv~~~f 135 (173)
++-|..++.||-|+.|+.+|-..++.+ +-|-++.- +..+-++
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~ 114 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIV 114 (142)
T ss_pred EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEE
Confidence 345677899999999999999887654 33333333 4444444
No 183
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=46.88 E-value=35 Score=30.00 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=46.8
Q ss_pred CeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 90 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 90 ~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
...++-+.-.++||.+.+|+..|.+.++.|-.-+..+.++....+|-+... ...++.+.|++
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~~----~~~~~~~~i~~ 398 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDAD----YAEEALDALKA 398 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCCC----CcHHHHHHHHc
Confidence 345667788899999999999999999999888888888877777744432 23355565554
No 184
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=46.82 E-value=31 Score=22.88 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 041818 44 LAKTIKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 44 l~~ai~yi~~L~~~~~~l~~~~~ 66 (173)
+..||+-|.-|+.++++|+.++.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999987644
No 185
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=46.52 E-value=1.3e+02 Score=31.32 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=29.8
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEE
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRA 122 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a 122 (173)
.....|+|.|++.|.|+..|..+|...|+.+...
T Consensus 15 ~~~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i 48 (1528)
T PF05088_consen 15 SDHTVIEIVTDDMPFLVDSVRMELNRQGLTIHLI 48 (1528)
T ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhCCCceEEE
Confidence 3478999999999999999999999999987443
No 186
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=46.47 E-value=35 Score=30.89 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=32.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG 128 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~ 128 (173)
.++|.|.+|-|+..+|++.|-..++++....|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 578999999999999999999999999999987764
No 187
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=45.98 E-value=76 Score=25.76 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=44.6
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
+.|.++|.+..|+ +...+.++ +.|.+.+++++...|++ .||..++.+...|...
T Consensus 183 ~~l~~H~Hn~~Gla~An~laAi-~aG~~~vd~s~~G~G~~----------aGN~~tE~lv~~l~~~ 237 (259)
T cd07939 183 LPLEFHAHNDLGLATANTLAAV-RAGATHVSVTVNGLGER----------AGNAALEEVVMALKHL 237 (259)
T ss_pred CeEEEEecCCCChHHHHHHHHH-HhCCCEEEEeccccccc----------ccCcCHHHHHHHHHHh
Confidence 6789999999997 88888888 58999999999999942 4788888888777654
No 188
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=45.94 E-value=2e+02 Score=25.02 Aligned_cols=89 Identities=10% Similarity=0.108 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCcccccceeeecCCCeEEEEEEccCC---C----CHHHHH---H
Q 041818 40 KASVLAKTIKTVRELQRTVREQKALCQVHEECVFPSEANELSLRNCNRDRGMLKVTLSCEDQ---P----ELMSDL---S 109 (173)
Q Consensus 40 k~sil~~ai~yi~~L~~~~~~l~~~~~~~~~~~~p~~~~~v~v~~~~~~~~~v~I~I~c~~r---~----glL~~I---l 109 (173)
...+-..|-+-|..|+.++..|+.+.+..-.+.-|.+. ..+.++|...-. . |-|.++ .
T Consensus 74 D~em~ema~~Ei~~~~~~~~~le~~L~~lLlPkDpnd~------------knvilEIRagtGGdEAalFagDLfrMY~rY 141 (363)
T COG0216 74 DPEMREMAEEEIKELEAKIEELEEELKILLLPKDPNDD------------KNIILEIRAGTGGDEAALFAGDLFRMYSRY 141 (363)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC------------cCeEEEEecCCCchHHHHHHHHHHHHHHHH
Confidence 45566667777777888887777655533222223222 234444433111 1 113333 2
Q ss_pred HHHHhCCCeEEEEEEEeeCCEEEEEEEEEec
Q 041818 110 RALRSVKGRLVRAEMVPVGGRIKCVLWVQGF 140 (173)
Q Consensus 110 ~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~ 140 (173)
..-..-+++|++++-+..||+-..+|.|.+.
T Consensus 142 Ae~kgWk~ei~s~se~~~GG~kEii~~I~G~ 172 (363)
T COG0216 142 AESKGWKVEILSASESELGGYKEIIASISGK 172 (363)
T ss_pred HHhCCCEEEEeecCcccCCCceEEEEEEecc
Confidence 3334445889999999999988888888765
No 189
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.57 E-value=90 Score=20.81 Aligned_cols=38 Identities=5% Similarity=-0.030 Sum_probs=27.2
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEec
Q 041818 99 EDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGF 140 (173)
Q Consensus 99 ~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~ 140 (173)
++.+|.+.++.++|.+.|+.|-.... ++ .--.|.+...
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~q---s~-~sISftV~~s 49 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVAT---SE-VSISLTLDPS 49 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe---cC-CEEEEEEEhh
Confidence 45689999999999999988755532 22 3455666654
No 190
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=45.35 E-value=71 Score=19.59 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.1
Q ss_pred ccCCCCHHHHHHHHHHhCCCeEEEE
Q 041818 98 CEDQPELMSDLSRALRSVKGRLVRA 122 (173)
Q Consensus 98 c~~r~glL~~Il~aLeelgL~Vv~a 122 (173)
.++.+|.+.+++.+|.+.|+.+--.
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i 33 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMI 33 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEE
Confidence 3668999999999999999988533
No 191
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=44.30 E-value=88 Score=26.96 Aligned_cols=38 Identities=16% Similarity=0.369 Sum_probs=33.5
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCE
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGR 130 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~r 130 (173)
+.|.++|.+..|+ +...+.+++. |.+.+++++...|++
T Consensus 185 ~~l~~H~Hnd~GlA~AN~laA~~a-Ga~~vd~s~~GlGer 223 (363)
T TIGR02090 185 LPISVHCHNDFGLATANSIAGVKA-GAEQVHVTVNGIGER 223 (363)
T ss_pred ceEEEEecCCCChHHHHHHHHHHC-CCCEEEEEeeccccc
Confidence 6789999999997 7889999975 999999999999964
No 192
>PRK08818 prephenate dehydrogenase; Provisional
Probab=44.13 E-value=1.4e+02 Score=25.94 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=35.1
Q ss_pred EEEEEEcc-CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEec
Q 041818 92 LKVTLSCE-DQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGF 140 (173)
Q Consensus 92 v~I~I~c~-~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~ 140 (173)
..+.+.-+ ++||.|.+++..|-..|+.+.+..+......-.. |.+.-.
T Consensus 296 ~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~ 344 (370)
T PRK08818 296 LTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFE 344 (370)
T ss_pred eEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEe
Confidence 44555555 9999999999999999999988888444433333 666544
No 193
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=41.24 E-value=40 Score=22.68 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=41.6
Q ss_pred EEEEccC-CCCHHHHHHHHHHhCCCeEEEEEEEeeCC-----------EEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 94 VTLSCED-QPELMSDLSRALRSVKGRLVRAEMVPVGG-----------RIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 94 I~I~c~~-r~glL~~Il~aLeelgL~Vv~a~ist~~~-----------rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
|.+-..+ ..|.+..+...|-++|+.|.+.+- ..+ ...-.|.+.+. ......|+.+|..+-..
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~--l~~~~~~~~~~~~~~~~~e~~v~~~--~~~~~~lr~~L~~la~e 75 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR--LSGRVPLEEQDDSPKACVEFSVRGQ--PADLEALRAALLELASE 75 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH--hhccccccccCCCCcEEEEEEEeCC--CCCHHHHHHHHHHHhcc
Confidence 4566677 889999999999999988754442 222 22334444433 25778899988876443
No 194
>PLN02550 threonine dehydratase
Probab=38.94 E-value=1.9e+02 Score=26.96 Aligned_cols=36 Identities=3% Similarity=0.041 Sum_probs=28.4
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVP 126 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist 126 (173)
+..+.+.+.-+++||.|.+++..|-+. +|+..+...
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~ 450 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRY 450 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEe
Confidence 446889999999999999999999875 555555443
No 195
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=38.63 E-value=1.1e+02 Score=19.89 Aligned_cols=52 Identities=4% Similarity=-0.025 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC-ccHHHHHHHHHH
Q 041818 100 DQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN-EGMVMLKRALNL 155 (173)
Q Consensus 100 ~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~-~~~~~l~~aL~~ 155 (173)
..+|.+.+++++|.+.|+.+-.... ++ .--+|.+....-. +..++|.+.|.+
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~~~~~~~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHMENAEDTNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEehhhcChHHHHHHHHHHHH
Confidence 4689999999999999988755532 22 3345555554211 244566666655
No 196
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=36.30 E-value=79 Score=29.44 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=33.3
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEE
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRI 131 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv 131 (173)
+-|.++|.+..|+ +...+.|+ +.|.+++++.+..+|++.
T Consensus 198 ipi~~H~Hnt~Gla~an~laAi-eaGad~iD~ai~glGg~t 237 (596)
T PRK14042 198 LPVHLHSHSTSGLASICHYEAV-LAGCNHIDTAISSFSGGA 237 (596)
T ss_pred CEEEEEeCCCCCcHHHHHHHHH-HhCCCEEEeccccccCCC
Confidence 7789999999997 66677776 679999999999999863
No 197
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=35.69 E-value=1.2e+02 Score=25.15 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=43.4
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
+.|.++|.+..|+ +...+.+++. |.+.+++++..+|++ .||..++.+...|...
T Consensus 204 ~~l~~H~Hn~~Gla~AN~laA~~a-G~~~vd~sv~GlGe~----------aGN~~tE~lv~~l~~~ 258 (279)
T cd07947 204 ENLEWHGHNDFYKAVANAVAAWLY-GASWVNCTLLGIGER----------TGNCPLEAMVIEYAQL 258 (279)
T ss_pred ceEEEEecCCCChHHHHHHHHHHh-CCCEEEEeccccccc----------ccchhHHHHHHHHHHh
Confidence 5689999999997 7888888775 999999999999942 3777777777777554
No 198
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=34.67 E-value=41 Score=23.07 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=31.1
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC---CEEEEEEEEEec
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG---GRIKCVLWVQGF 140 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~---~rv~~~f~vk~~ 140 (173)
+....+.|.-+.+||.|...++++-... +|+--++-..+ ++++..|.+...
T Consensus 8 ~~E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~~~~~a~vlvgi~v~~~ 61 (91)
T PF00585_consen 8 GREALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYSGDDFARVLVGIEVPDA 61 (91)
T ss_dssp --EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-TTTSCSEEEEEEE-SST
T ss_pred CCEEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCCCCCeeeEEEEEEeCCH
Confidence 4567888899999999999999886555 25444443333 467777765543
No 199
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=34.17 E-value=1.3e+02 Score=19.54 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=33.2
Q ss_pred CCCcccccceeeecCCCeEEEEEEccCCCC------HHHHHHHHHHhCCCeEEEEEEEeeC
Q 041818 74 PSEANELSLRNCNRDRGMLKVTLSCEDQPE------LMSDLSRALRSVKGRLVRAEMVPVG 128 (173)
Q Consensus 74 p~~~~~v~v~~~~~~~~~v~I~I~c~~r~g------lL~~Il~aLeelgL~Vv~a~ist~~ 128 (173)
|..--.+.+.. ...++.+.|.+.+....- -+..+-..|...|+.+.+.++...+
T Consensus 21 p~~LG~v~v~l-~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~~ 80 (85)
T PF02120_consen 21 PPELGSVEVKL-RLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQGS 80 (85)
T ss_dssp SGGG--EEEEE-EEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS-
T ss_pred ccccCcEEEEE-EEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEECC
Confidence 44334455544 334558889998875433 2888999999999999888776543
No 200
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=33.02 E-value=1.3e+02 Score=19.23 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEeccCCccHHHHHHHHHHHh
Q 041818 105 MSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNLVI 157 (173)
Q Consensus 105 L~~Il~aLeelgL~Vv~a~ist~--~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l 157 (173)
+..+++.+++.| +.-+.+|.- |+.++..+ +.....+.+.++|++..
T Consensus 36 i~~~~~~~~~~G--a~~~~~sGsG~G~~v~~l~-----~~~~~~~~v~~~l~~~~ 83 (85)
T PF08544_consen 36 IDELKEAAEENG--ALGAKMSGSGGGPTVFALC-----KDEDDAERVAEALREHY 83 (85)
T ss_dssp HHHHHHHHHHTT--ESEEEEETTSSSSEEEEEE-----SSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCC--CCceecCCCCCCCeEEEEE-----CCHHHHHHHHHHHHHhC
Confidence 678889999999 666777777 77666655 23355677777776653
No 201
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=32.05 E-value=2.2e+02 Score=21.34 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=35.7
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC--ccHHHHHHHHHHHhcC
Q 041818 108 LSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDR 159 (173)
Q Consensus 108 Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~--~~~~~l~~aL~~~l~~ 159 (173)
+-.+++++|++++...+...++.-.-.+.+...+|- .....+-++|..+|+.
T Consensus 13 ~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~ 66 (154)
T PRK00092 13 IEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDV 66 (154)
T ss_pred HHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 345568899999999999876554444445444332 4457778888888874
No 202
>PRK14634 hypothetical protein; Provisional
Probab=31.83 E-value=2.3e+02 Score=21.47 Aligned_cols=50 Identities=8% Similarity=0.016 Sum_probs=35.0
Q ss_pred HHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEeccCC----ccHHHHHHHHHHHhcC
Q 041818 109 SRALRSVKGRLVRAEMVPVGG-RIKCVLWVQGFKGN----EGMVMLKRALNLVIDR 159 (173)
Q Consensus 109 l~aLeelgL~Vv~a~ist~~~-rv~~~f~vk~~~g~----~~~~~l~~aL~~~l~~ 159 (173)
-..++++|++++...+..-++ +++-+| +...+|. .+...+-.+|..+|+.
T Consensus 14 ~~~~~~~G~elvdve~~~~~~~~~lrV~-ID~~~g~~v~lddC~~vSr~is~~LD~ 68 (155)
T PRK14634 14 SATAADKGFELCGIQVLTHLQPMTLQVQ-IRRSSGSDVSLDDCAGFSGPMGEALEA 68 (155)
T ss_pred HHHHHHcCCEEEEEEEEeCCCCcEEEEE-EECCCCCcccHHHHHHHHHHHHHHhcc
Confidence 345679999999999988765 555444 4444442 3457778888888874
No 203
>PRK14631 hypothetical protein; Provisional
Probab=31.32 E-value=2.5e+02 Score=21.78 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=34.7
Q ss_pred HHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEe----------------ccCC---ccHHHHHHHHHHHhcC
Q 041818 109 SRALRSVKGRLVRAEMVPVGG-RIKCVLWVQG----------------FKGN---EGMVMLKRALNLVIDR 159 (173)
Q Consensus 109 l~aLeelgL~Vv~a~ist~~~-rv~~~f~vk~----------------~~g~---~~~~~l~~aL~~~l~~ 159 (173)
--+++++|++++...+..-++ +++-+|+=+. ..++ .+...+-++|..+|+.
T Consensus 15 ~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD~ 85 (174)
T PRK14631 15 APAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDV 85 (174)
T ss_pred HHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhcc
Confidence 344689999999999998764 5555554321 1122 3457888889888874
No 204
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=31.04 E-value=1.7e+02 Score=23.27 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=44.0
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
+.+.++|.+..|+ +...+.|+ +.|.+.+++++...|+ ..||..++.+...|...
T Consensus 191 ~~~~~H~Hn~~gla~an~laA~-~aG~~~id~s~~G~G~----------~~Gn~~~e~~~~~l~~~ 245 (265)
T cd03174 191 VPLGLHTHNTLGLAVANSLAAL-EAGADRVDGSVNGLGE----------RAGNAATEDLVAALEGL 245 (265)
T ss_pred CeEEEEeCCCCChHHHHHHHHH-HcCCCEEEeccccccc----------cccCccHHHHHHHHHhc
Confidence 7889999999997 77888887 4899999999999994 23778888877777664
No 205
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.00 E-value=2e+02 Score=21.93 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=35.3
Q ss_pred HHHHhCCCeEEEEEEEeeCC-EEEEEEEEEeccCC---ccHHHHHHHHHHHhcC
Q 041818 110 RALRSVKGRLVRAEMVPVGG-RIKCVLWVQGFKGN---EGMVMLKRALNLVIDR 159 (173)
Q Consensus 110 ~aLeelgL~Vv~a~ist~~~-rv~~~f~vk~~~g~---~~~~~l~~aL~~~l~~ 159 (173)
..++++|++++...+...|. .++-++ +... |. .+...+-+++..+|+.
T Consensus 16 p~~~~lG~ELv~ve~~~~~~~~~lrI~-id~~-g~v~lddC~~vSr~is~~LD~ 67 (153)
T COG0779 16 PVVESLGFELVDVEFVKEGRDSVLRIY-IDKE-GGVTLDDCADVSRAISALLDV 67 (153)
T ss_pred HhHhhcCcEEEEEEEEEcCCCcEEEEE-eCCC-CCCCHHHHHHHHHHHHHHhcc
Confidence 45689999999999999985 555555 3433 43 4567888888888883
No 206
>PRK11020 hypothetical protein; Provisional
Probab=30.59 E-value=80 Score=23.01 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 041818 17 RRLRINDQYDNLRKILPNLVKVDKASVLAKTIKTVRELQRTVREQKALC 65 (173)
Q Consensus 17 RR~~i~~~~~~L~sl~P~~~k~~k~sil~~ai~yi~~L~~~~~~l~~~~ 65 (173)
==.++|++++.++.=++.....+.+.++..--+-|..|..+|+.|+...
T Consensus 6 Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~ 54 (118)
T PRK11020 6 EIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQ 54 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3357899999998888777777778888888888888888888886543
No 207
>PRK02001 hypothetical protein; Validated
Probab=30.56 E-value=2.1e+02 Score=21.67 Aligned_cols=47 Identities=30% Similarity=0.344 Sum_probs=31.3
Q ss_pred HHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC--ccHHHHHHHHHHHhcC
Q 041818 110 RALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDR 159 (173)
Q Consensus 110 ~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~--~~~~~l~~aL~~~l~~ 159 (173)
..++++|++++...+...+ . +-+| +...+|- .....+-++|..+|+.
T Consensus 13 ~~~~~~g~eLvdv~~~~~~-~-lrV~-ID~~~Gv~lddC~~vSr~is~~LD~ 61 (152)
T PRK02001 13 ELLEGPELFLVDLTISPDN-K-IVVE-IDGDEGVWIEDCVELSRAIEHNLDR 61 (152)
T ss_pred hhhhhcCcEEEEEEEEcCC-E-EEEE-EECCCCCCHHHHHHHHHHHHHHhcC
Confidence 3467899999999988643 2 3333 3333332 4557888899999875
No 208
>PRK06545 prephenate dehydrogenase; Validated
Probab=30.49 E-value=1.7e+02 Score=24.93 Aligned_cols=39 Identities=8% Similarity=0.190 Sum_probs=32.4
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG 129 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~ 129 (173)
.+.+.|..+++||.+..|+..|-+.|+.+.+..|.-.-+
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~ 328 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEARE 328 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccC
Confidence 456677779999999999999999999998888755433
No 209
>PRK06291 aspartate kinase; Provisional
Probab=29.76 E-value=2.6e+02 Score=24.90 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=33.7
Q ss_pred CCeEEEEEEcc---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEec
Q 041818 89 RGMLKVTLSCE---DQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGF 140 (173)
Q Consensus 89 ~~~v~I~I~c~---~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~ 140 (173)
++...|.+... ..+|.+.+++.+|.+.|+.|...+.++.. .--+|.+...
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~~ 371 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDEA 371 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeHH
Confidence 44567787764 46899999999999999998665433322 3334444543
No 210
>PRK00341 hypothetical protein; Provisional
Probab=29.32 E-value=1.9e+02 Score=19.85 Aligned_cols=63 Identities=8% Similarity=0.058 Sum_probs=40.6
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeE----EEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRL----VRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~V----v~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
.+-++|.....+++...|.+.++.+. +. +...-|+.|.++-.++.+... +....+.+=++|.+
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~-s~~q~~~iy~~L~~ 83 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVAT-DEDQLQDINSALRA 83 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEEC-CHHHHHHHHHHHhh
Confidence 37889999999999999999998765 43 333445556555555555554 23444555555543
No 211
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=29.23 E-value=1.4e+02 Score=26.73 Aligned_cols=38 Identities=8% Similarity=0.263 Sum_probs=32.6
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCE
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGR 130 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~r 130 (173)
+.|.++|.+..|+ +...+.|+ +.|.+++++++..++++
T Consensus 198 ~pi~~H~Hnt~GlA~AN~laAi-eaGad~vD~sv~glg~g 236 (448)
T PRK12331 198 VPLEVHTHATSGIAEMTYLKAI-EAGADIIDTAISPFAGG 236 (448)
T ss_pred CeEEEEecCCCCcHHHHHHHHH-HcCCCEEEeeccccCCC
Confidence 6789999999997 77777777 67999999999998865
No 212
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.17 E-value=1.8e+02 Score=19.38 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=39.1
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC---EEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG---RIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~---rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+...|.-+.+||.|...++.|- -+.+|..-+....++ .++..+.+.. . ....+.+.|.+
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~-p~~~ITeF~YR~~~~~~a~vlvGi~~~~---~-~~~~l~~~l~~ 63 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELL-PKWNITLFHYRNQGSDYGRVLVGIQVPD---A-DLDELKERLDA 63 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC-CCCeEeEEEEecCCCCceeEEEEEEeCh---H-HHHHHHHHHHH
Confidence 4567788999999999999993 267788877766554 3444454432 1 44556665544
No 213
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=29.05 E-value=1.8e+02 Score=25.12 Aligned_cols=39 Identities=10% Similarity=0.298 Sum_probs=33.2
Q ss_pred eEEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCE
Q 041818 91 MLKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGR 130 (173)
Q Consensus 91 ~v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~r 130 (173)
.+.|.++|.+..|+ +...+.+++ .|.+.+++++...|++
T Consensus 188 ~~~l~~H~Hnd~GlA~AN~laAv~-aGa~~vd~tv~GlGer 227 (378)
T PRK11858 188 DIPIEVHCHNDFGMATANALAGIE-AGAKQVHTTVNGLGER 227 (378)
T ss_pred CCeEEEEecCCcCHHHHHHHHHHH-cCCCEEEEeecccccc
Confidence 36789999999997 778888885 8999999999999964
No 214
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.82 E-value=1.4e+02 Score=18.23 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=18.2
Q ss_pred EEEEEcc---CCCCHHHHHHHHHHhCCCe
Q 041818 93 KVTLSCE---DQPELMSDLSRALRSVKGR 118 (173)
Q Consensus 93 ~I~I~c~---~r~glL~~Il~aLeelgL~ 118 (173)
.|.+.+. +.+|++.+++.+|.+.+..
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~ 31 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVR 31 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeE
Confidence 3445553 5789999999999764433
No 215
>PHA01753 Holliday junction resolvase
Probab=28.54 E-value=2.4e+02 Score=20.69 Aligned_cols=59 Identities=8% Similarity=-0.153 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCeEEEEEEEee-----------CCEEEEEEEEEeccCC--ccHHHHHHHHHHHhcCCCCCC
Q 041818 106 SDLSRALRSVKGRLVRAEMVPV-----------GGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDRPVSPG 164 (173)
Q Consensus 106 ~~Il~aLeelgL~Vv~a~ist~-----------~~rv~~~f~vk~~~g~--~~~~~l~~aL~~~l~~~~~~~ 164 (173)
..+...|++.|..++..|.++. .+.++..+.|+...+. ....+=.+.|..+.+..+.+|
T Consensus 12 ~~a~~~L~~~G~~il~rn~~~~~~~GEiDIIA~~~~~lvfVEVKtR~~~~~~V~~~Ki~kLi~fa~~fg~~~ 83 (121)
T PHA01753 12 YKTLEILESNGFKALRIPVSGTGKQALPDIIATKNNTIYPIEVKSTSKDVVTVDKFQIEKLFRFCEIFSFCE 83 (121)
T ss_pred HHHHHHHHHCCCEEEEeccccCCCCCCccEEEeeCCEEEEEEEEeCCCCcEecCHHHHHHHHHHHHHhCccC
Confidence 4567889999999999999882 2456778888876443 222344455555556655444
No 216
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.51 E-value=1.3e+02 Score=17.34 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=22.0
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEE
Q 041818 99 EDQPELMSDLSRALRSVKGRLVRAEM 124 (173)
Q Consensus 99 ~~r~glL~~Il~aLeelgL~Vv~a~i 124 (173)
++.+|.+.+++.+|.+.|+.+...+.
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence 56799999999999999998865544
No 217
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=27.25 E-value=2e+02 Score=24.60 Aligned_cols=40 Identities=10% Similarity=0.139 Sum_probs=34.3
Q ss_pred CeEEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCE
Q 041818 90 GMLKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGR 130 (173)
Q Consensus 90 ~~v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~r 130 (173)
..+.|.++|.+..|+ +...+.+++ .|.+.+++++..+|++
T Consensus 188 ~~i~ig~H~HnnlGla~ANslaAi~-aGa~~iD~Sl~GlG~~ 228 (337)
T PRK08195 188 PDTQVGFHGHNNLGLGVANSLAAVE-AGATRIDGSLAGLGAG 228 (337)
T ss_pred CCCeEEEEeCCCcchHHHHHHHHHH-hCCCEEEecChhhccc
Confidence 357899999999997 888888885 8999999999999973
No 218
>PRK14636 hypothetical protein; Provisional
Probab=27.10 E-value=3e+02 Score=21.35 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=35.3
Q ss_pred HHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEeccCC---ccHHHHHHHHHHHhcC
Q 041818 108 LSRALRSVKGRLVRAEMVPVGG-RIKCVLWVQGFKGN---EGMVMLKRALNLVIDR 159 (173)
Q Consensus 108 Il~aLeelgL~Vv~a~ist~~~-rv~~~f~vk~~~g~---~~~~~l~~aL~~~l~~ 159 (173)
+-.+++++|++++..++..-++ +++-+|+=+...|. .+...+-.+|..+|+.
T Consensus 11 vep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~ 66 (176)
T PRK14636 11 IEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDE 66 (176)
T ss_pred HHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcc
Confidence 3345789999999999988764 45554442332233 4457788889888874
No 219
>PRK15124 2'-5' RNA ligase; Provisional
Probab=27.08 E-value=2.8e+02 Score=20.97 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=45.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEE-EEEEEEEeccCCccHHHHHHHHHHHhcCCCCCC
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRI-KCVLWVQGFKGNEGMVMLKRALNLVIDRPVSPG 164 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv-~~~f~vk~~~g~~~~~~l~~aL~~~l~~~~~~~ 164 (173)
+.+..-.+-.+..+..+.+++.+....-....+..+|.+= -.++.+...++......|.+.|.+.+...+.+.
T Consensus 44 iTL~FlG~v~~~~~~~l~~~l~~~~~~pF~l~l~~~g~Fp~prvlwlg~~~~~~~L~~L~~~l~~~l~~~G~~~ 117 (176)
T PRK15124 44 LTLAFLGEVSAEKQQALSQLAGRIRQPGFTLTLDDAGQWPRSRVVWLGMRQPPRGLLQLANMLRSQAARSGCYQ 117 (176)
T ss_pred EEEEecCCCCHHHHHHHHHHHHhcccCCeEEEECcccCcCCCCEEEEEcCCCCHHHHHHHHHHHHHHHHcCCCC
Confidence 4444444445567777888887764444444444443221 234555555455678899999999998888876
No 220
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=26.54 E-value=1.1e+02 Score=18.44 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=17.9
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCC
Q 041818 10 HSEAERRRRLRINDQYDNLRKILPNL 35 (173)
Q Consensus 10 h~~~Er~RR~~i~~~~~~L~sl~P~~ 35 (173)
..+.|=.||..++..|..-..++|..
T Consensus 12 ~ai~eT~rRR~~Q~~yN~~h~ItP~t 37 (44)
T PF12344_consen 12 KAIDETNRRREIQIAYNKEHGITPKT 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 34567888888999999999999954
No 221
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=25.77 E-value=4.3e+02 Score=22.71 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=29.3
Q ss_pred CCCeEEEEEE---ccCCCCHHHHHHHHHHhCCCeEEEEEE
Q 041818 88 DRGMLKVTLS---CEDQPELMSDLSRALRSVKGRLVRAEM 124 (173)
Q Consensus 88 ~~~~v~I~I~---c~~r~glL~~Il~aLeelgL~Vv~a~i 124 (173)
.++...|.+. ....+|.+.+++.+|.+.++.+...+.
T Consensus 257 ~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~ 296 (401)
T TIGR00656 257 RKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQ 296 (401)
T ss_pred ECCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEc
Confidence 3456677777 456799999999999999999865544
No 222
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.55 E-value=6.6e+02 Score=24.78 Aligned_cols=119 Identities=12% Similarity=0.116 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCcccccceeeecCCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEE
Q 041818 43 VLAKTIKTVRELQRTVREQKALCQVHEECVFPSEANELSLRNCNRDRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRA 122 (173)
Q Consensus 43 il~~ai~yi~~L~~~~~~l~~~~~~~~~~~~p~~~~~v~v~~~~~~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a 122 (173)
-+..-.+-.+.|++++++|+............. ..+...+++-.+.+...-.-.+.-|-.+...|..-.-+.+-+
T Consensus 733 kv~~l~~~~k~lekel~~lk~~~~~~~~~~~~~-----~~~~~~i~g~~~~~~~~~~~d~~~Lr~~a~~lk~k~~~~viv 807 (879)
T COG0013 733 KVERLLEELKELEKELERLKKKLAAAELADLLS-----NAKAEEIGGVKVLAKEVDGADMKELREIADDLKKKLGSAVIV 807 (879)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cccceeeCCEEEEEEEecCCCHHHHHHHHHHHHhhcCCcEEE
Confidence 445555567888888888876333221111111 111112233333333332234556777777776532222333
Q ss_pred EEEeeCCEEEEEEEEE-eccCCccHHHHHHHHHHHhcCCCCCCCCCC
Q 041818 123 EMVPVGGRIKCVLWVQ-GFKGNEGMVMLKRALNLVIDRPVSPGNSSK 168 (173)
Q Consensus 123 ~ist~~~rv~~~f~vk-~~~g~~~~~~l~~aL~~~l~~~~~~~~~~~ 168 (173)
-++..++.+..+..+. ...+......|...|..++...+ |++.+
T Consensus 808 l~~~~~~Kv~~~~~v~~~~~~~~~a~~lvk~la~~~gG~G--GGr~d 852 (879)
T COG0013 808 LASVADGKVSLVVAVSKDLTDKVKAGELVKELAAIVGGKG--GGRPD 852 (879)
T ss_pred EEEecCCeEEEEEEechhhhcccCHHHHHHHHHHhcCCCC--CCchh
Confidence 3444444444444333 11234677888888888877666 55544
No 223
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=25.49 E-value=2.4e+02 Score=23.12 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=41.7
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHH
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALN 154 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~ 154 (173)
+.|.++|.+..|+ +...+.+++ .|.+.+++++..+|.+ .||..+..+..+|.
T Consensus 185 ~~i~~H~Hn~~Gla~an~~~a~~-aG~~~vd~s~~GlGer----------aGn~~~e~~~~~l~ 237 (262)
T cd07948 185 CDIEFHGHNDTGCAIANAYAALE-AGATHIDTTVLGIGER----------NGITPLGGLIARMY 237 (262)
T ss_pred CeEEEEECCCCChHHHHHHHHHH-hCCCEEEEeccccccc----------cCCccHHHHHHHHH
Confidence 6789999999997 888888885 8999999999999864 26677777776664
No 224
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=25.40 E-value=1.7e+02 Score=26.32 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=32.4
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCE
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGR 130 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~r 130 (173)
+-|.++|.+..|+ +...+.|+ +.|.+++++.+..++++
T Consensus 197 vpI~~H~Hnt~GlA~AN~laAi-eaGad~vD~sv~~~g~g 235 (467)
T PRK14041 197 VPVEVHSHCTTGLASLAYLAAV-EAGADMFDTAISPFSMG 235 (467)
T ss_pred CceEEEecCCCCcHHHHHHHHH-HhCCCEEEeeccccCCC
Confidence 6789999999997 77777777 56999999999988865
No 225
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=24.92 E-value=2.4e+02 Score=23.21 Aligned_cols=45 Identities=16% Similarity=0.320 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhccCCCCCC---------------------CChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 041818 18 RLRINDQYDNLRKILPNLVK---------------------VDKASVLAKTIKTVRELQRTVREQKALC 65 (173)
Q Consensus 18 R~~i~~~~~~L~sl~P~~~k---------------------~~k~sil~~ai~yi~~L~~~~~~l~~~~ 65 (173)
|.-|.+.|..|+..=.. .| |-.+.||.++. |+.++.+|++||.+.
T Consensus 6 ~qLI~~lf~RL~~ae~~-prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~A--L~~a~~ri~eLe~ql 71 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQ-PRDPEAEALIAQALARQPDAPYYLAQTVLVQEQA--LKQAQARIQELEAQL 71 (247)
T ss_pred HHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 45688888888887543 22 11233333322 567777777777764
No 226
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=24.64 E-value=1.5e+02 Score=26.49 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=30.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG 128 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~ 128 (173)
.|+|+|.+|-|+.-++++.|-.-++++--..|-..|
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~ 37 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCC
Confidence 579999999999999999999998888777773333
No 227
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=23.74 E-value=2.2e+02 Score=25.79 Aligned_cols=39 Identities=8% Similarity=0.120 Sum_probs=32.9
Q ss_pred eEEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCE
Q 041818 91 MLKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGR 130 (173)
Q Consensus 91 ~v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~r 130 (173)
.+.|.++|.+..|+ +...+.|+ +.|.+++++.+.+++++
T Consensus 206 ~~pi~~H~Hnt~GlA~An~laAi-eAGad~vD~ai~g~g~g 245 (468)
T PRK12581 206 NLPLIVHTHATSGISQMTYLAAV-EAGADRIDTALSPFSEG 245 (468)
T ss_pred CCeEEEEeCCCCccHHHHHHHHH-HcCCCEEEeeccccCCC
Confidence 47789999999997 67777777 67999999999998875
No 228
>PRK06635 aspartate kinase; Reviewed
Probab=23.59 E-value=4.5e+02 Score=22.61 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=34.2
Q ss_pred CCCeEEEEEEc-cCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEE
Q 041818 88 DRGMLKVTLSC-EDQPELMSDLSRALRSVKGRLVRAEMVPVG-GRIKCVLWVQ 138 (173)
Q Consensus 88 ~~~~v~I~I~c-~~r~glL~~Il~aLeelgL~Vv~a~ist~~-~rv~~~f~vk 138 (173)
.++.+.|.+.+ ..++|.+.+++.+|.+.|+.|...+.+... +..--.|.+.
T Consensus 259 ~~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~ 311 (404)
T PRK06635 259 DKDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVP 311 (404)
T ss_pred cCCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEc
Confidence 34456666654 457899999999999999998766544323 2344455554
No 229
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=23.57 E-value=1.3e+02 Score=24.67 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=43.1
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHH
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALN 154 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~ 154 (173)
+.|.++|.+..|+ +...+.+++ .|.+.+++++..+|++ .||..+..+..+|.
T Consensus 196 ~~l~~H~Hnd~Gla~An~laA~~-aGa~~id~s~~GlGer----------aGn~~~e~~~~~L~ 248 (273)
T cd07941 196 VPLGIHAHNDSGLAVANSLAAVE-AGATQVQGTINGYGER----------CGNANLCSIIPNLQ 248 (273)
T ss_pred CeeEEEecCCCCcHHHHHHHHHH-cCCCEEEEeccccccc----------cccccHHHHHHHHH
Confidence 7789999999987 888999996 5999999999999953 26777777777774
No 230
>TIGR02258 2_5_ligase 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles.
Probab=23.49 E-value=3.2e+02 Score=20.36 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHhCCCeEEEEEE---EeeCCE-EEEEEEEEeccCCccHHHHHHHHHHHhcCCCCCC
Q 041818 101 QPELMSDLSRALRSVKGRLVRAEM---VPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLVIDRPVSPG 164 (173)
Q Consensus 101 r~glL~~Il~aLeelgL~Vv~a~i---st~~~r-v~~~f~vk~~~g~~~~~~l~~aL~~~l~~~~~~~ 164 (173)
.+..+..+..+|.+.........+ .++++. -..++++.... +.....|.++|..++...+.+.
T Consensus 50 ~~~~~~~l~~~l~~~~~~~f~l~l~~~~~F~~~~~~~vl~l~~~~-~~~L~~L~~~l~~~~~~~g~~~ 116 (179)
T TIGR02258 50 DEEQVEELEDALAKIAEPPFTLKLEGIGVFGNPKRPRVLWAGVEQ-SEELTQLHADLERELAKLGFSK 116 (179)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEeeeeeCCCCCCCeEEEEeeCC-CHHHHHHHHHHHHHHHHcCCCC
Confidence 345667777777665433334443 444331 12345555543 3467889999999988777653
No 231
>PRK06635 aspartate kinase; Reviewed
Probab=23.16 E-value=2.9e+02 Score=23.80 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=27.9
Q ss_pred CCeEEEEEEc---cCCCCHHHHHHHHHHhCCCeEEEEE
Q 041818 89 RGMLKVTLSC---EDQPELMSDLSRALRSVKGRLVRAE 123 (173)
Q Consensus 89 ~~~v~I~I~c---~~r~glL~~Il~aLeelgL~Vv~a~ 123 (173)
.+...|.+.+ .+.||.+.+++++|.+.|+.|....
T Consensus 338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 4556677765 4679999999999999999986653
No 232
>PRK00915 2-isopropylmalate synthase; Validated
Probab=22.30 E-value=4.7e+02 Score=23.72 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=33.9
Q ss_pred eEEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEE
Q 041818 91 MLKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRI 131 (173)
Q Consensus 91 ~v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv 131 (173)
.+.|.++|.+..|+ +...+.+++ .|.+.+++.+...|++.
T Consensus 196 ~v~l~~H~HND~GlAvANslaAv~-aGa~~Vd~Tv~GlGERa 236 (513)
T PRK00915 196 KAIISVHCHNDLGLAVANSLAAVE-AGARQVECTINGIGERA 236 (513)
T ss_pred cceEEEEecCCCCHHHHHHHHHHH-hCCCEEEEEeecccccc
Confidence 37899999999997 777888885 89999999999999653
No 233
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=22.27 E-value=98 Score=23.54 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=17.5
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHhcc
Q 041818 6 AAKKHSEAERRRRLRINDQYDNLRKI 31 (173)
Q Consensus 6 ~~~~h~~~Er~RR~~i~~~~~~L~sl 31 (173)
-+++....||+||.--..-|.-||..
T Consensus 11 ErEnnk~RERrRRAIaakIfaGLR~~ 36 (150)
T PF05687_consen 11 ERENNKRRERRRRAIAAKIFAGLRAH 36 (150)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677789999995444555556554
No 234
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=22.25 E-value=2.2e+02 Score=23.86 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCCC
Q 041818 11 SEAERRRRLRINDQYDNLRKILPNLV 36 (173)
Q Consensus 11 ~~~Er~RR~~i~~~~~~L~sl~P~~~ 36 (173)
...=|.||.++.+.+..|..-=|...
T Consensus 140 l~p~R~~r~~l~d~I~kLk~k~P~s~ 165 (271)
T PF13805_consen 140 LQPSRDRRRKLQDEIAKLKYKDPQSP 165 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTTT
T ss_pred HhHHHHHhHHHHHHHHHHHhcCCCCh
Confidence 34458899999999999998777443
No 235
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=21.88 E-value=2.2e+02 Score=26.47 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=32.7
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCE
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGR 130 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~r 130 (173)
+.|.++|.+..|+ +...+.++ +.|.+++++.+..+|++
T Consensus 193 ~pi~~H~Hnt~Gla~An~laAv-eaGa~~vd~ai~GlG~~ 231 (582)
T TIGR01108 193 LPVHLHSHATTGMAEMALLKAI-EAGADGIDTAISSMSGG 231 (582)
T ss_pred CceEEEecCCCCcHHHHHHHHH-HhCCCEEEecccccccc
Confidence 6789999999997 77777777 56999999999999984
No 236
>PF14992 TMCO5: TMCO5 family
Probab=21.80 E-value=1.2e+02 Score=25.52 Aligned_cols=24 Identities=8% Similarity=0.236 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 041818 43 VLAKTIKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 43 il~~ai~yi~~L~~~~~~l~~~~~ 66 (173)
+..+++.||+.||+.++.++.+++
T Consensus 145 l~eDq~~~i~klkE~L~rmE~ekE 168 (280)
T PF14992_consen 145 LCEDQANEIKKLKEKLRRMEEEKE 168 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999998887666
No 237
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=21.66 E-value=3.8e+02 Score=23.01 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=32.7
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCE
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGR 130 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~r 130 (173)
+.|.++|.+..|+ +...+.++ ..|.+.+++++...|++
T Consensus 186 v~l~~H~HNd~GlA~ANalaA~-~aGa~~vd~tl~GiGer 224 (365)
T TIGR02660 186 LPLEMHAHNDLGMATANTLAAV-RAGATHVNTTVNGLGER 224 (365)
T ss_pred CeEEEEecCCCChHHHHHHHHH-HhCCCEEEEEeeccccc
Confidence 6789999999997 77778887 67999999999999965
No 238
>PRK08210 aspartate kinase I; Reviewed
Probab=21.66 E-value=5.3e+02 Score=22.27 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=0.0
Q ss_pred eecCCCeEEEEEEcc---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHh
Q 041818 85 CNRDRGMLKVTLSCE---DQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVI 157 (173)
Q Consensus 85 ~~~~~~~v~I~I~c~---~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l 157 (173)
....++...|.+... +.||.+.+++.+|.+.++.+.. +++.+..+..++ .........++|.+.+
T Consensus 333 v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~--~~~s~~~is~vv------~~~~~~~a~~~Lh~~f 400 (403)
T PRK08210 333 PSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ--SADSHTTIWVLV------KEEDMEKAVNALHDAF 400 (403)
T ss_pred EEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE--EecCCCEEEEEE------cHHHHHHHHHHHHHHh
No 239
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=21.64 E-value=1.7e+02 Score=25.23 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=25.6
Q ss_pred CeEEEEEEc---cCCCCHHHHHHHHHHhCCCeEEEE
Q 041818 90 GMLKVTLSC---EDQPELMSDLSRALRSVKGRLVRA 122 (173)
Q Consensus 90 ~~v~I~I~c---~~r~glL~~Il~aLeelgL~Vv~a 122 (173)
+...|.+.. .+.||.+.+++++|.+.|+.+...
T Consensus 336 ~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i 371 (401)
T TIGR00656 336 GLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI 371 (401)
T ss_pred CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence 344555555 358999999999999999999743
No 240
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=21.53 E-value=3.5e+02 Score=23.10 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=33.1
Q ss_pred eEEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCC
Q 041818 91 MLKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGG 129 (173)
Q Consensus 91 ~v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~ 129 (173)
.+.|.++|.+..|+ +...+.+++ .|.+.+++++...|+
T Consensus 188 ~i~ig~H~HnnlGla~ANslaAi~-aGa~~iD~Sl~G~G~ 226 (333)
T TIGR03217 188 ETQVGFHAHHNLSLAVANSIAAIE-AGATRIDASLRGLGA 226 (333)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH-hCCCEEEeecccccc
Confidence 47899999999997 778888885 899999999999997
No 241
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=21.49 E-value=3e+02 Score=25.09 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=34.3
Q ss_pred eEEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEE
Q 041818 91 MLKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRI 131 (173)
Q Consensus 91 ~v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv 131 (173)
.+.|.++|.+..|+ +...+.+++ .|.+.+++++...|++.
T Consensus 201 ~v~i~~H~HND~GlA~ANslaAi~-aGa~~Vd~Tl~GlGERa 241 (524)
T PRK12344 201 GVPLGIHAHNDSGCAVANSLAAVE-AGARQVQGTINGYGERC 241 (524)
T ss_pred CCeEEEEECCCCChHHHHHHHHHH-hCCCEEEEecccccccc
Confidence 47899999999997 778888886 59999999999999853
No 242
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=20.99 E-value=2.6e+02 Score=25.49 Aligned_cols=39 Identities=15% Similarity=0.329 Sum_probs=33.1
Q ss_pred eEEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCE
Q 041818 91 MLKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGR 130 (173)
Q Consensus 91 ~v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~r 130 (173)
.+.|.++|.+.-|+ +...+.++ +.|.+.+++.+..+|++
T Consensus 286 ~i~I~~H~HND~GlAvANslaAi-~aGa~~Vd~Tv~GiGER 325 (503)
T PLN03228 286 DIVFSVHCHNDLGLATANTIAGI-CAGARQVEVTINGIGER 325 (503)
T ss_pred CceeEecccCCcChHHHHHHHHH-HhCCCEEEEeccccccc
Confidence 46789999999997 77778888 78999999999998864
No 243
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=20.93 E-value=1.1e+02 Score=13.97 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=8.5
Q ss_pred CHHHHHHHHHHh
Q 041818 103 ELMSDLSRALRS 114 (173)
Q Consensus 103 glL~~Il~aLee 114 (173)
|++..++++|+.
T Consensus 1 gvmdsllealqt 12 (15)
T PF06345_consen 1 GVMDSLLEALQT 12 (15)
T ss_dssp -HHHHHHHHHHH
T ss_pred CcHHHHHHHHHc
Confidence 577888888864
No 244
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=20.83 E-value=3.2e+02 Score=23.62 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=31.7
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCC
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGG 129 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~ 129 (173)
..|.++|.+..|+ +...+.+++ .|.+.+++.+..+|+
T Consensus 242 ~~i~~H~Hnd~GlA~AN~lAA~~-aGa~~vd~sv~GlGe 279 (347)
T PLN02746 242 DKLAVHFHDTYGQALANILVSLQ-MGISTVDSSVAGLGG 279 (347)
T ss_pred CeEEEEECCCCChHHHHHHHHHH-hCCCEEEEecccccC
Confidence 4689999999997 777887776 589999999999997
No 245
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=20.83 E-value=2.3e+02 Score=17.78 Aligned_cols=45 Identities=16% Similarity=0.297 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 041818 11 SEAERRRRLRINDQYDNLRKILPNLVKVDKASVLAKTIKTVRELQRTVREQK 62 (173)
Q Consensus 11 ~~~Er~RR~~i~~~~~~L~sl~P~~~k~~k~sil~~ai~yi~~L~~~~~~l~ 62 (173)
+..=|.-|=.+..++..+..++- ..+ .++|.+||+.+-+.++...
T Consensus 13 ~~~lR~~RHD~~NhLqvI~gllq-lg~------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 13 IDSLRAQRHDFLNHLQVIYGLLQ-LGK------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH-CCC------HHHHHHHHHHHHHHHHHHH
Confidence 33446777778888999988883 222 4688999999999888763
No 246
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=20.58 E-value=2.6e+02 Score=18.33 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=38.3
Q ss_pred EEEEccC---CCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHh
Q 041818 94 VTLSCED---QPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVI 157 (173)
Q Consensus 94 I~I~c~~---r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l 157 (173)
|+++-++ .+|.-..|+++|.++++.++.- .+..+.+.+.+.... .....+..+|.+..
T Consensus 4 levfdqdMvG~~g~d~~i~~~l~~~~v~ii~K--~~nANtit~yl~~~~----k~~~r~~~~Le~~~ 64 (71)
T cd04910 4 LEVFDQDMVGEVGYDLEILELLQRFKVSIIAK--DTNANTITHYLAGSL----KTIKRLTEDLENRF 64 (71)
T ss_pred EEEeCCCccCChhHHHHHHHHHHHcCCeEEEE--ecCCCeEEEEEEcCH----HHHHHHHHHHHHhC
Confidence 3444433 4678999999999999998877 566666666662221 24456666665554
No 247
>PLN02551 aspartokinase
Probab=20.58 E-value=5.1e+02 Score=23.66 Aligned_cols=73 Identities=8% Similarity=0.089 Sum_probs=0.0
Q ss_pred ceeeecCCCeEEEEEEccC---CCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 82 LRNCNRDRGMLKVTLSCED---QPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 82 v~~~~~~~~~v~I~I~c~~---r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
+.......+.+.|.|.+.. .+|.+.+++.+|.++|+.|.....+ -.--+|.+....... .+.+++.+..++.
T Consensus 357 v~~It~~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~IssS----e~sIs~~v~~~~~~~-~~~i~~~l~~l~~ 431 (521)
T PLN02551 357 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS----EVSISLTLDPSKLWS-RELIQQELDHLVE 431 (521)
T ss_pred ccceecCCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEecc----CCEEEEEEehhHhhh-hhhHHHHHHHHHH
Q ss_pred C
Q 041818 159 R 159 (173)
Q Consensus 159 ~ 159 (173)
.
T Consensus 432 e 432 (521)
T PLN02551 432 E 432 (521)
T ss_pred H
No 248
>smart00338 BRLZ basic region leucin zipper.
Probab=20.56 E-value=1.1e+02 Score=19.31 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 041818 48 IKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 48 i~yi~~L~~~~~~l~~~~~ 66 (173)
-.|+..|+.+++.|+....
T Consensus 25 k~~~~~Le~~~~~L~~en~ 43 (65)
T smart00338 25 KAEIEELERKVEQLEAENE 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3466667666666665443
No 249
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=20.42 E-value=3.5e+02 Score=19.74 Aligned_cols=49 Identities=22% Similarity=0.286 Sum_probs=31.9
Q ss_pred HHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCcc---HHHHHHHHHHHhcC
Q 041818 110 RALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEG---MVMLKRALNLVIDR 159 (173)
Q Consensus 110 ~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~---~~~l~~aL~~~l~~ 159 (173)
..++++|++++..++...++...-.+.+....| .+ ...+.++|...|+.
T Consensus 4 ~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~g-v~lddc~~~sr~i~~~LD~ 55 (141)
T PF02576_consen 4 PLLEELGLELVDVEVVKEGGNRILRVFIDKDGG-VSLDDCEKVSRAISALLDA 55 (141)
T ss_dssp HHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS----HHHHHHHHHHHGGGTTT
T ss_pred cchhhcCCEEEEEEEEECCCCEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHcc
Confidence 467899999999999999987555555554433 44 46667777777765
No 250
>PRK14641 hypothetical protein; Provisional
Probab=20.40 E-value=4.1e+02 Score=20.56 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=32.4
Q ss_pred HhCCCeEEEEEEEeeCCEEEEEEEEEeccCC--ccHHHHHHHHHHHhcC
Q 041818 113 RSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVIDR 159 (173)
Q Consensus 113 eelgL~Vv~a~ist~~~rv~~~f~vk~~~g~--~~~~~l~~aL~~~l~~ 159 (173)
+++|++++...+..-++.-.-.+++...+|- .+...+-++|..+|+.
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lrV~ID~~~gv~lDdC~~vSr~Is~~LD~ 68 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIEVLLDADTGIRIDQCAFFSRRIRERLEE 68 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhCc
Confidence 4899999999999877543334444443331 4457788888888874
No 251
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=20.21 E-value=2.4e+02 Score=23.43 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=42.6
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+.|.++|.+..|+ +...+.++ +.|.+.+++++..+|+.-+ ..+..||..++++...|..
T Consensus 200 ~~i~~H~Hn~~Gla~AN~laA~-~aG~~~id~s~~GlGecpf----a~g~aGN~~~E~lv~~L~~ 259 (287)
T PRK05692 200 ERLAGHFHDTYGQALANIYASL-EEGITVFDASVGGLGGCPY----APGASGNVATEDVLYMLHG 259 (287)
T ss_pred CeEEEEecCCCCcHHHHHHHHH-HhCCCEEEEEccccCCCCC----CCCccccccHHHHHHHHHh
Confidence 5789999999997 77888887 6799999999999987211 1122356666666666643
Done!