Query 041818
Match_columns 173
No_of_seqs 138 out of 1218
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 18:51:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.8 2E-18 6.8E-23 118.0 7.3 64 3-66 3-67 (82)
2 4h10_B Circadian locomoter out 99.7 1.1E-17 3.6E-22 111.0 6.5 61 2-62 3-65 (71)
3 1hlo_A Protein (transcription 99.7 2.2E-16 7.5E-21 107.3 6.9 63 4-66 10-74 (80)
4 1a0a_A BHLH, protein (phosphat 99.7 1.3E-17 4.5E-22 108.5 0.8 52 7-58 3-61 (63)
5 1nkp_B MAX protein, MYC proto- 99.6 2.6E-16 9E-21 107.6 7.2 61 6-66 2-64 (83)
6 4ati_A MITF, microphthalmia-as 99.6 2.9E-16 9.8E-21 114.1 7.4 62 5-66 26-91 (118)
7 1an4_A Protein (upstream stimu 99.6 2.8E-17 9.6E-22 107.5 1.1 54 5-58 4-63 (65)
8 4h10_A ARYL hydrocarbon recept 99.6 1.1E-16 3.6E-21 107.0 3.8 54 4-57 7-64 (73)
9 1nkp_A C-MYC, MYC proto-oncoge 99.6 7.1E-16 2.4E-20 106.6 6.8 60 6-65 6-68 (88)
10 1nlw_A MAD protein, MAX dimeri 99.6 4.7E-15 1.6E-19 100.7 7.4 60 7-66 2-64 (80)
11 3u5v_A Protein MAX, transcript 99.5 4.3E-15 1.5E-19 99.9 4.2 59 5-63 4-66 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.4 9.5E-13 3.3E-17 86.6 6.1 54 5-58 11-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.3 1.7E-12 6E-17 83.3 6.0 54 6-59 2-58 (60)
14 4f3l_A Mclock, circadian locom 99.2 2.8E-11 9.6E-16 102.1 5.5 54 4-57 10-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 99.1 1E-10 3.5E-15 99.8 5.3 53 5-57 12-68 (387)
16 2lfh_A DNA-binding protein inh 98.9 3.5E-10 1.2E-14 73.7 1.6 46 11-56 19-67 (68)
17 4ath_A MITF, microphthalmia-as 98.8 1.1E-08 3.7E-13 69.2 6.1 46 18-63 4-53 (83)
18 4aya_A DNA-binding protein inh 98.5 3.3E-07 1.1E-11 63.7 6.2 47 14-60 33-82 (97)
19 1zpv_A ACT domain protein; str 97.9 0.00023 8E-09 47.7 11.3 68 90-158 4-71 (91)
20 1u8s_A Glycine cleavage system 97.6 0.0006 2.1E-08 52.1 9.8 66 91-158 6-71 (192)
21 2nyi_A Unknown protein; protei 97.3 0.00085 2.9E-08 51.7 8.4 67 91-157 5-73 (195)
22 2ko1_A CTR148A, GTP pyrophosph 97.3 0.0013 4.4E-08 43.3 7.8 63 91-154 5-67 (88)
23 2nyi_A Unknown protein; protei 97.1 0.0027 9.1E-08 48.8 8.8 68 90-159 92-165 (195)
24 1u8s_A Glycine cleavage system 96.7 0.018 6.1E-07 43.7 10.8 70 90-159 92-168 (192)
25 3o1l_A Formyltetrahydrofolate 96.4 0.036 1.2E-06 45.7 11.2 71 88-158 19-91 (302)
26 3p96_A Phosphoserine phosphata 96.3 0.014 4.7E-07 49.3 8.3 67 91-157 12-78 (415)
27 3obi_A Formyltetrahydrofolate 96.1 0.053 1.8E-06 44.3 10.3 69 90-158 5-75 (288)
28 3n0v_A Formyltetrahydrofolate 95.9 0.062 2.1E-06 43.9 10.0 68 91-159 8-77 (286)
29 3lou_A Formyltetrahydrofolate 95.6 0.075 2.6E-06 43.5 9.5 68 91-158 10-81 (292)
30 2f1f_A Acetolactate synthase i 95.4 0.039 1.4E-06 41.5 6.6 65 92-158 4-70 (164)
31 2pc6_A Probable acetolactate s 95.0 0.038 1.3E-06 41.7 5.5 65 92-158 5-71 (165)
32 2fgc_A Acetolactate synthase, 94.8 0.093 3.2E-06 40.5 7.2 65 92-158 30-96 (193)
33 2jhe_A Transcription regulator 94.8 0.079 2.7E-06 38.7 6.7 36 93-128 2-37 (190)
34 3nrb_A Formyltetrahydrofolate 94.1 0.33 1.1E-05 39.5 9.5 68 90-159 6-75 (287)
35 1y7p_A Hypothetical protein AF 93.4 0.26 8.8E-06 38.8 7.1 62 91-156 4-70 (223)
36 2qmx_A Prephenate dehydratase; 85.6 2.8 9.5E-05 34.0 7.5 66 91-157 200-266 (283)
37 3luy_A Probable chorismate mut 85.4 10 0.00036 31.3 11.0 57 100-157 217-274 (329)
38 2f06_A Conserved hypothetical 83.8 9.2 0.00031 26.9 9.1 44 94-137 75-118 (144)
39 3mwb_A Prephenate dehydratase; 83.1 3.2 0.00011 34.1 6.9 65 91-156 201-267 (313)
40 2qmw_A PDT, prephenate dehydra 80.4 6.2 0.00021 31.6 7.5 64 91-156 186-253 (267)
41 2f06_A Conserved hypothetical 73.6 15 0.0005 25.7 7.3 36 92-127 7-42 (144)
42 2re1_A Aspartokinase, alpha an 69.3 29 0.001 25.0 8.7 36 88-123 100-138 (167)
43 2re1_A Aspartokinase, alpha an 65.9 33 0.0011 24.8 7.9 65 87-156 21-88 (167)
44 1phz_A Protein (phenylalanine 63.3 12 0.00041 32.1 5.6 64 91-156 34-98 (429)
45 2dt9_A Aspartokinase; protein- 61.5 21 0.00073 25.8 6.2 53 88-140 13-69 (167)
46 2dtj_A Aspartokinase; protein- 60.7 35 0.0012 25.0 7.3 34 88-121 12-46 (178)
47 1sc6_A PGDH, D-3-phosphoglycer 52.0 37 0.0013 28.5 6.8 63 91-155 331-393 (404)
48 2dt9_A Aspartokinase; protein- 48.6 71 0.0024 22.8 7.4 63 88-158 92-157 (167)
49 2jee_A YIIU; FTSZ, septum, coi 48.0 19 0.00066 23.6 3.5 23 44-66 15-37 (81)
50 3dhx_A Methionine import ATP-b 47.6 60 0.0021 21.7 7.0 58 92-155 24-84 (106)
51 4go7_X Aspartokinase; transfer 47.5 76 0.0026 24.0 7.4 53 88-140 32-88 (200)
52 2wt7_A Proto-oncogene protein 46.4 48 0.0016 20.2 5.2 17 14-30 1-17 (63)
53 2dnr_A Synaptojanin-1; RRM dom 45.0 49 0.0017 22.0 5.2 44 89-135 7-56 (91)
54 2dtj_A Aspartokinase; protein- 44.1 89 0.0031 22.7 8.0 63 88-158 92-157 (178)
55 3mtj_A Homoserine dehydrogenas 42.5 78 0.0027 27.0 7.4 65 90-158 358-425 (444)
56 3ble_A Citramalate synthase fr 41.9 36 0.0012 27.7 5.1 55 91-156 213-268 (337)
57 3muj_A Transcription factor CO 39.9 45 0.0015 24.0 4.6 34 21-54 96-133 (138)
58 2l5g_A GPS2 protein, G protein 38.3 52 0.0018 18.3 3.8 28 38-65 4-31 (38)
59 3s1t_A Aspartokinase; ACT doma 36.4 1.1E+02 0.0038 22.3 6.7 52 89-140 14-69 (181)
60 1rwu_A Hypothetical UPF0250 pr 36.4 1E+02 0.0035 21.1 7.0 51 89-140 34-87 (109)
61 3ewb_X 2-isopropylmalate synth 36.4 50 0.0017 26.3 5.0 53 92-155 198-251 (293)
62 2jqq_A Conserved oligomeric go 35.9 21 0.00072 27.3 2.5 47 16-63 51-97 (204)
63 2zvf_A Alanyl-tRNA synthetase; 34.7 1.2E+02 0.0042 21.5 12.9 125 22-160 13-137 (171)
64 3s1t_A Aspartokinase; ACT doma 34.3 1.3E+02 0.0046 21.9 6.8 62 89-158 94-158 (181)
65 3dxi_A Putative aldolase; TIM 33.9 49 0.0017 26.9 4.6 53 92-155 187-240 (320)
66 1ygy_A PGDH, D-3-phosphoglycer 33.7 1.5E+02 0.0052 25.5 8.0 50 91-140 454-505 (529)
67 3he4_B Synzip5; heterodimeric 33.0 57 0.0019 18.3 3.3 23 44-66 5-27 (46)
68 2rrl_A FLIK, flagellar HOOK-le 32.9 1.5E+02 0.0051 21.9 8.1 80 48-128 68-154 (169)
69 1p3q_Q VPS9P, vacuolar protein 32.9 49 0.0017 19.9 3.3 25 12-36 3-27 (54)
70 3m05_A Uncharacterized protein 32.3 1.2E+02 0.0039 21.0 5.7 56 101-158 14-70 (114)
71 1pd7_B MAD1; PAH2, SIN3, eukar 31.9 55 0.0019 16.7 3.2 20 38-57 2-21 (26)
72 3ab4_A Aspartokinase; aspartat 31.7 2.2E+02 0.0076 23.6 10.1 52 88-139 261-316 (421)
73 1gd2_E Transcription factor PA 29.7 37 0.0013 21.5 2.5 19 47-65 27-45 (70)
74 1dh3_A Transcription factor CR 29.2 40 0.0014 20.1 2.5 18 49-66 22-39 (55)
75 1xkm_B Distinctin chain B; por 28.5 60 0.0021 16.0 3.0 18 42-59 4-21 (26)
76 2er8_A Regulatory protein Leu3 28.4 39 0.0013 20.6 2.5 19 48-66 48-66 (72)
77 1vgj_A Hypothetical protein PH 28.2 1.6E+02 0.0054 20.8 8.0 64 101-165 50-119 (184)
78 2qsw_A Methionine import ATP-b 26.8 1.3E+02 0.0046 19.5 7.2 38 102-140 37-74 (100)
79 3ab4_A Aspartokinase; aspartat 26.5 2.8E+02 0.0094 23.0 8.8 63 88-158 341-406 (421)
80 1zme_C Proline utilization tra 26.2 46 0.0016 20.0 2.5 16 49-64 44-59 (70)
81 2lf0_A Uncharacterized protein 25.8 84 0.0029 22.1 3.9 53 14-66 8-60 (123)
82 3p96_A Phosphoserine phosphata 25.3 2.7E+02 0.0093 22.5 8.8 67 90-158 100-167 (415)
83 2akf_A Coronin-1A; coiled coil 25.2 53 0.0018 17.2 2.1 14 51-64 15-28 (32)
84 2qrr_A Methionine import ATP-b 25.0 1.5E+02 0.005 19.3 7.9 45 93-140 25-74 (101)
85 3eeg_A 2-isopropylmalate synth 24.5 80 0.0027 25.6 4.3 53 92-155 199-252 (325)
86 2ztj_A Homocitrate synthase; ( 24.2 99 0.0034 25.6 4.9 53 91-154 189-242 (382)
87 1hwt_C Protein (heme activator 21.6 58 0.002 20.2 2.4 19 48-66 57-75 (81)
88 1zbt_A RF-1, peptide chain rel 21.1 2.7E+02 0.0093 23.2 6.9 88 41-140 86-183 (371)
89 1nvm_A HOA, 4-hydroxy-2-oxoval 20.7 1.3E+02 0.0045 24.3 4.9 53 91-154 194-247 (345)
90 3k5p_A D-3-phosphoglycerate de 20.3 3.8E+02 0.013 22.4 13.7 64 90-155 342-405 (416)
91 3rmj_A 2-isopropylmalate synth 20.1 1.4E+02 0.0047 24.7 4.9 52 92-154 205-257 (370)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.75 E-value=2e-18 Score=118.02 Aligned_cols=64 Identities=28% Similarity=0.362 Sum_probs=59.3
Q ss_pred hhHHhhhccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 041818 3 KELAAKKHSEAERRRRLRINDQYDNLRKILPNL-VKVDKASVLAKTIKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 3 ~~~~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~-~k~~k~sil~~ai~yi~~L~~~~~~l~~~~~ 66 (173)
+...+.+|+.+||+||++||+.|..|++|||.. .++||++||.+||+||+.|+.+++.|+.+..
T Consensus 3 ~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~ 67 (82)
T 1am9_A 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENL 67 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999987 8999999999999999999999999987654
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=111.01 Aligned_cols=61 Identities=28% Similarity=0.375 Sum_probs=54.6
Q ss_pred hhhHH-hhhccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 041818 2 AKELA-AKKHSEAERRRRLRINDQYDNLRKILPNL-VKVDKASVLAKTIKTVRELQRTVREQK 62 (173)
Q Consensus 2 ~~~~~-~~~h~~~Er~RR~~i~~~~~~L~sl~P~~-~k~~k~sil~~ai~yi~~L~~~~~~l~ 62 (173)
.|.++ +.+|+.+||+||++||+.|..|++|||.. .|+||++||..||+||+.||+++.-|+
T Consensus 3 ~k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 3 DKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34444 89999999999999999999999999964 699999999999999999999988764
No 3
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.65 E-value=2.2e-16 Score=107.34 Aligned_cols=63 Identities=25% Similarity=0.423 Sum_probs=57.8
Q ss_pred hHHhhhccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 041818 4 ELAAKKHSEAERRRRLRINDQYDNLRKILPNL--VKVDKASVLAKTIKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 4 ~~~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~--~k~~k~sil~~ai~yi~~L~~~~~~l~~~~~ 66 (173)
...+.+|+..||+||..||+.|..|+++||.. .|++|++||..||+||+.|++++++|+.+.+
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~ 74 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999965 6999999999999999999999999987654
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.65 E-value=1.3e-17 Score=108.48 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=47.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhhHHHHHHHHHHHHHHHH
Q 041818 7 AKKHSEAERRRRLRINDQYDNLRKILPNL-------VKVDKASVLAKTIKTVRELQRTV 58 (173)
Q Consensus 7 ~~~h~~~Er~RR~~i~~~~~~L~sl~P~~-------~k~~k~sil~~ai~yi~~L~~~~ 58 (173)
+.+|+.+||+||++||..|..|++|||+. ++.+||+||+.||+||++||+++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999943 56679999999999999999865
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.65 E-value=2.6e-16 Score=107.60 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=55.8
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 041818 6 AAKKHSEAERRRRLRINDQYDNLRKILPN--LVKVDKASVLAKTIKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 6 ~~~~h~~~Er~RR~~i~~~~~~L~sl~P~--~~k~~k~sil~~ai~yi~~L~~~~~~l~~~~~ 66 (173)
.+.+|+..||+||..||+.|..|+++||. ..|++|++||..||+||+.|+++++.|+.+.+
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~ 64 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999996 48999999999999999999999988876554
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.64 E-value=2.9e-16 Score=114.15 Aligned_cols=62 Identities=31% Similarity=0.540 Sum_probs=52.4
Q ss_pred HHhhhccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 041818 5 LAAKKHSEAERRRRLRINDQYDNLRKILPNL----VKVDKASVLAKTIKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 5 ~~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~----~k~~k~sil~~ai~yi~~L~~~~~~l~~~~~ 66 (173)
+++.+|+.+||+||++||+.|..|++|||.. .|++|++||.+||+||+.|+++++.|+....
T Consensus 26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999976 3678999999999999999999999986433
No 7
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.64 E-value=2.8e-17 Score=107.52 Aligned_cols=54 Identities=33% Similarity=0.493 Sum_probs=49.2
Q ss_pred HHhhhccHHHHHHHHHHHHHHHHHhccCCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 041818 5 LAAKKHSEAERRRRLRINDQYDNLRKILPNLV------KVDKASVLAKTIKTVRELQRTV 58 (173)
Q Consensus 5 ~~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~~------k~~k~sil~~ai~yi~~L~~~~ 58 (173)
..+.+|+.+||+||++||+.|..|++|||... +++|++||.+||+||+.|+++.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 34789999999999999999999999999764 7899999999999999999764
No 8
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.63 E-value=1.1e-16 Score=106.97 Aligned_cols=54 Identities=31% Similarity=0.517 Sum_probs=49.6
Q ss_pred hHHhhhccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 041818 4 ELAAKKHSEAERRRRLRINDQYDNLRKILPNL----VKVDKASVLAKTIKTVRELQRT 57 (173)
Q Consensus 4 ~~~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~----~k~~k~sil~~ai~yi~~L~~~ 57 (173)
.+++.+|+.+||+||++||+.|..|++|||.+ +|+||++||+.||+||+.|+.-
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 45689999999999999999999999999954 7999999999999999999753
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.62 E-value=7.1e-16 Score=106.62 Aligned_cols=60 Identities=23% Similarity=0.315 Sum_probs=54.5
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 041818 6 AAKKHSEAERRRRLRINDQYDNLRKILPNL---VKVDKASVLAKTIKTVRELQRTVREQKALC 65 (173)
Q Consensus 6 ~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~---~k~~k~sil~~ai~yi~~L~~~~~~l~~~~ 65 (173)
.+..|+..||+||..||+.|..|+++||.. .|++|++||.+||+||+.|+.+.+.+....
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~ 68 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999964 699999999999999999999988776543
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=4.7e-15 Score=100.71 Aligned_cols=60 Identities=20% Similarity=0.318 Sum_probs=54.3
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 041818 7 AKKHSEAERRRRLRINDQYDNLRKILPNL---VKVDKASVLAKTIKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 7 ~~~h~~~Er~RR~~i~~~~~~L~sl~P~~---~k~~k~sil~~ai~yi~~L~~~~~~l~~~~~ 66 (173)
+..||..||+||..||+.|..|+++||.. .|.+|++||..|++||+.|+++.+.++.+.+
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~ 64 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQID 64 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999954 6888999999999999999999988876544
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.53 E-value=4.3e-15 Score=99.91 Aligned_cols=59 Identities=25% Similarity=0.402 Sum_probs=49.2
Q ss_pred HHhhhccHHHHHHHHHHHHHHHHHhccCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHHh
Q 041818 5 LAAKKHSEAERRRRLRINDQYDNLRKILPN---LVKV-DKASVLAKTIKTVRELQRTVREQKA 63 (173)
Q Consensus 5 ~~~~~h~~~Er~RR~~i~~~~~~L~sl~P~---~~k~-~k~sil~~ai~yi~~L~~~~~~l~~ 63 (173)
-.+..|+..||+||..||+.|..|+.+||. ..|. +|.+||..||+||+.|++++++++.
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999994 3455 6889999999999999999998763
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.36 E-value=9.5e-13 Score=86.56 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=49.3
Q ss_pred HHhhhccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHH
Q 041818 5 LAAKKHSEAERRRRLRINDQYDNLRKILPNL--VKVDKASVLAKTIKTVRELQRTV 58 (173)
Q Consensus 5 ~~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~--~k~~k~sil~~ai~yi~~L~~~~ 58 (173)
..+..|+..||+|+..||+.|..|+.+||.. .|.+|..||..||+||..|++.+
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3477899999999999999999999999964 78899999999999999999765
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.34 E-value=1.7e-12 Score=83.32 Aligned_cols=54 Identities=30% Similarity=0.392 Sum_probs=48.7
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 041818 6 AAKKHSEAERRRRLRINDQYDNLRKILPNL---VKVDKASVLAKTIKTVRELQRTVR 59 (173)
Q Consensus 6 ~~~~h~~~Er~RR~~i~~~~~~L~sl~P~~---~k~~k~sil~~ai~yi~~L~~~~~ 59 (173)
.+..|+..||+|+..||+.|..|+.+||.. .|.+|..+|..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999999999999964 588999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.15 E-value=2.8e-11 Score=102.12 Aligned_cols=54 Identities=31% Similarity=0.468 Sum_probs=42.7
Q ss_pred hHHhhhccHHHHHHHHHHHHHHHHHhccCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 041818 4 ELAAKKHSEAERRRRLRINDQYDNLRKILP-NLVKVDKASVLAKTIKTVRELQRT 57 (173)
Q Consensus 4 ~~~~~~h~~~Er~RR~~i~~~~~~L~sl~P-~~~k~~k~sil~~ai~yi~~L~~~ 57 (173)
...+.+|+.+||+||++||..|..|++||| +..|+||++||..||.||+.|+..
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 345899999999999999999999999999 558999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.07 E-value=1e-10 Score=99.77 Aligned_cols=53 Identities=32% Similarity=0.498 Sum_probs=49.2
Q ss_pred HHhhhccHHHHHHHHHHHHHHHHHhccCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 041818 5 LAAKKHSEAERRRRLRINDQYDNLRKILP----NLVKVDKASVLAKTIKTVRELQRT 57 (173)
Q Consensus 5 ~~~~~h~~~Er~RR~~i~~~~~~L~sl~P----~~~k~~k~sil~~ai~yi~~L~~~ 57 (173)
.++.+|+.+||+||++||+.|..|++||| ...|+||++||..||.||+.|+..
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 34899999999999999999999999999 568999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.89 E-value=3.5e-10 Score=73.71 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHH
Q 041818 11 SEAERRRRLRINDQYDNLRKILPNL---VKVDKASVLAKTIKTVRELQR 56 (173)
Q Consensus 11 ~~~Er~RR~~i~~~~~~L~sl~P~~---~k~~k~sil~~ai~yi~~L~~ 56 (173)
+..||+|+..||+.|+.||.+||.. .|.+|..+|.-||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4569999999999999999999954 688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.79 E-value=1.1e-08 Score=69.15 Aligned_cols=46 Identities=28% Similarity=0.571 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 041818 18 RLRINDQYDNLRKILPNL----VKVDKASVLAKTIKTVRELQRTVREQKA 63 (173)
Q Consensus 18 R~~i~~~~~~L~sl~P~~----~k~~k~sil~~ai~yi~~L~~~~~~l~~ 63 (173)
|..||++|..|..|||.+ .+.+|++||..|++||+.|++..+.+..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999964 5789999999999999999998877654
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.46 E-value=3.3e-07 Score=63.71 Aligned_cols=47 Identities=26% Similarity=0.451 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHH
Q 041818 14 ERRRRLRINDQYDNLRKILPNL---VKVDKASVLAKTIKTVRELQRTVRE 60 (173)
Q Consensus 14 Er~RR~~i~~~~~~L~sl~P~~---~k~~k~sil~~ai~yi~~L~~~~~~ 60 (173)
||.|-..+|+.|..||.+||.. .|.+|..+|.-||+||..|++-++.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5889999999999999999954 6889999999999999999998876
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.92 E-value=0.00023 Score=47.65 Aligned_cols=68 Identities=7% Similarity=0.060 Sum_probs=56.8
Q ss_pred CeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 90 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 90 ~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
..+.|.+.|+++||++.+|..+|.+.|..|.+.+..+.++.+.-.+.+... +....+.|.++|..+..
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~-~~~~l~~l~~~L~~~~~ 71 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-EKQDFTYLRNEFEAFGQ 71 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SCCCHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC-CCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999988888877777777554 34567888888887643
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.55 E-value=0.0006 Score=52.09 Aligned_cols=66 Identities=14% Similarity=0.292 Sum_probs=55.2
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
.+.|.|.|+++||++..|..+|.++|+.|+.+++.+.++.+.-.+.+.... .....|+++|..+..
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~--~~~~~l~~~L~~~~~ 71 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP--SNITRVETTLPLLGQ 71 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH--HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC--CCHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999998888887788776542 356778888876553
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.35 E-value=0.00085 Score=51.68 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=52.0
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCC--ccHHHHHHHHHHHh
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGN--EGMVMLKRALNLVI 157 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~--~~~~~l~~aL~~~l 157 (173)
.+.|.|.|+++||++..|..+|.++|+.|+.+++.+.++.+.-.+.+...... .....|+++|..++
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~~~~~l~~~L~~~~ 73 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALPGFQ 73 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHSTTCE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchhHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999888877667777644211 11456666665444
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.30 E-value=0.0013 Score=43.34 Aligned_cols=63 Identities=11% Similarity=0.220 Sum_probs=46.4
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHH
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALN 154 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~ 154 (173)
.+.|.+.+.++||+|.+|..+|.+.|+.|.+.+..+.++.+...|.+.... ......+.++|.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~-~~~l~~l~~~L~ 67 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKN-TDKLTTLMDKLR 67 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESS-HHHHHHHHHHHT
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECC-HHHHHHHHHHHh
Confidence 467889999999999999999999999999999888776545555555432 233344444443
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.10 E-value=0.0027 Score=48.83 Aligned_cols=68 Identities=12% Similarity=-0.018 Sum_probs=51.7
Q ss_pred CeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC------CEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 90 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG------GRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 90 ~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~------~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
..+.|.|.|+++||++..|...|-++|+.|..++..+.+ +.+.-.+.+... .... ..|+++|..+...
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~-~~l~~~l~~~a~~ 165 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY-QEVVTALSRVEEE 165 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH-HHHHHHHHHHHHH
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc-HHHHHHHHHHHHH
Confidence 458899999999999999999999999999999998887 333333333322 2334 7888888766543
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.75 E-value=0.018 Score=43.72 Aligned_cols=70 Identities=6% Similarity=0.076 Sum_probs=51.7
Q ss_pred CeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC----EEEEEEEEEec---cCCccHHHHHHHHHHHhcC
Q 041818 90 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGG----RIKCVLWVQGF---KGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 90 ~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~----rv~~~f~vk~~---~g~~~~~~l~~aL~~~l~~ 159 (173)
..+.|.+.|+++||++..|...|.+.|+.|..+...+.+. +....|++... .+......|+++|..+...
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~~~~ 168 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTA 168 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999888762 23333433322 1245678899988876554
No 25
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=96.42 E-value=0.036 Score=45.70 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=55.3
Q ss_pred CCCeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 88 DRGMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 88 ~~~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~--~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
+...+.+.+.|+++||+...|...|-++|..|+.++-... +++++-.+.+....+..+.+.|+++|..+-.
T Consensus 19 ~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~la~ 91 (302)
T 3o1l_A 19 GMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTPIAE 91 (302)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHHHHH
T ss_pred ccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 3445789999999999999999999999999999997754 5666555555544444677889888866543
No 26
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=96.30 E-value=0.014 Score=49.31 Aligned_cols=67 Identities=19% Similarity=0.169 Sum_probs=54.8
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHh
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVI 157 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l 157 (173)
.+.|.+.|+++||+...|...|-++|..|+.++-...++++.-.+.+....+..+.+.|+++|..+-
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~ 78 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEAAI 78 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHHHTSHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCcCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999899998776666665432224578888887653
No 27
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=96.06 E-value=0.053 Score=44.33 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=53.5
Q ss_pred CeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 90 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV--PVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 90 ~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~is--t~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
..+.+.+.|+++||+...|...|-++|..|+.++-. ..++.++-.+.+...++..+.++|+++|..+-.
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~la~ 75 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAA 75 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999999999999988864 345666555555544444678899998876644
No 28
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=95.90 E-value=0.062 Score=43.87 Aligned_cols=68 Identities=10% Similarity=0.030 Sum_probs=52.9
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV--PVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~is--t~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
.+.+.+.|+++||+...|...|-++|..|..++-. ...++++-.+.+.... ..+.+.|+++|..+...
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~~~~~~L~~~f~~la~~ 77 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-DFDEAGFRAGLAERSEA 77 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-SCCHHHHHHHHHHHHGG
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-CCCHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999998876 3456654444444332 46778999999776554
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=95.61 E-value=0.075 Score=43.51 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=50.3
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEEec--cCCccHHHHHHHHHHHhc
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV--PVGGRIKCVLWVQGF--KGNEGMVMLKRALNLVID 158 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~is--t~~~rv~~~f~vk~~--~g~~~~~~l~~aL~~~l~ 158 (173)
.+.+.+.|+++||+...|...|-++|..|+.++-. ..+++++-.+.+... ....+.+.|+++|..+-.
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~ 81 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAE 81 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999877 345665444444333 213567888888866543
No 30
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=95.40 E-value=0.039 Score=41.51 Aligned_cols=65 Identities=9% Similarity=0.130 Sum_probs=50.2
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~--~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
..|.|.+.++||+|.+|+..+.+.|..+.+.++.+.. +...-+|.+.+. ....+.|..+|.++.+
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d--~~~leqI~kqL~Kl~d 70 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGD--EKVLEQIEKQLHKLVD 70 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESC--HHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEecc--HHHHHHHHHHHcCCCC
Confidence 4678899999999999999999999999998887654 556666666522 3566777777777654
No 31
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=95.04 E-value=0.038 Score=41.69 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=50.7
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~--~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
..|.|...++||+|.+|+..+...|..|.+.++.... +...-+|.+.+. ....+.|..+|.++.+
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d--~~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP--DEIVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC--HHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc--HHHHHHHHHHhcCCCC
Confidence 4678889999999999999999999999998887554 556666666533 3566777888877654
No 32
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=94.83 E-value=0.093 Score=40.54 Aligned_cols=65 Identities=11% Similarity=0.197 Sum_probs=50.8
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG--GRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~--~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
..|.|..+++||.|.+|...+...|..|.+.++.... +...-++.+.+. ....+.|..+|.++++
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--e~~ieqL~kQL~KLid 96 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--DKTIEQIEKQAYKLVE 96 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--TTHHHHHHHHHTTSTT
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--HHHHHHHHHHhcCcCc
Confidence 5778888999999999999999999999998886443 456666666644 3667788888877654
No 33
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=94.80 E-value=0.079 Score=38.71 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=33.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 041818 93 KVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG 128 (173)
Q Consensus 93 ~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~ 128 (173)
.|+|.|.+|+|++.+|+.+|.+.+..+..+++.+.|
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g 37 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCC
Confidence 478999999999999999999999999999997763
No 34
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=94.14 E-value=0.33 Score=39.53 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=48.7
Q ss_pred CeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEEeccCCccHHHHHHHHHHHhcC
Q 041818 90 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMV--PVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDR 159 (173)
Q Consensus 90 ~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~is--t~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~ 159 (173)
..+.+.+.|+++||+...|...|-++|..|+.++-. ..+++++-.+.+.... ....+|+++|..+-.+
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~L~~~f~~la~~ 75 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV--AGVNDFNSAFGKVVEK 75 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC-----CHHHHHHHHHHGG
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC--CCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999998865 3456554444343322 2344888888765443
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=93.35 E-value=0.26 Score=38.81 Aligned_cols=62 Identities=10% Similarity=0.145 Sum_probs=42.4
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-----CEEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVG-----GRIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~-----~rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
.+.|.|.+.++||+|.+|+.+|-+.+..+.+.+..... +...-. ++..+ . ..+.+-+.|+++
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d-~-~Le~LL~kLrkI 70 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEG-G-DFEKILERVKTF 70 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECS-S-CHHHHHHHHHTC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECC-C-CHHHHHHHHhCC
Confidence 47889999999999999999999999999999987754 333333 44443 2 566666666543
No 36
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=85.58 E-value=2.8 Score=33.98 Aligned_cols=66 Identities=9% Similarity=0.088 Sum_probs=50.1
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE-EEEEEEEEeccCCccHHHHHHHHHHHh
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLVI 157 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~r-v~~~f~vk~~~g~~~~~~l~~aL~~~l 157 (173)
...|-+..+++||.|.++|..+...|+...+...-...+. ..+.|+|.-. |......++++|..+-
T Consensus 200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e-g~~~d~~v~~aL~~L~ 266 (283)
T 2qmx_A 200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI-GHREDQNVHNALENLR 266 (283)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE-SCTTSHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe-cCCCcHHHHHHHHHHH
Confidence 3445555578999999999999999999999998887654 4677777765 5555567777776653
No 37
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=85.41 E-value=10 Score=31.25 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEE-EEEEEEEeccCCccHHHHHHHHHHHh
Q 041818 100 DQPELMSDLSRALRSVKGRLVRAEMVPVGGRI-KCVLWVQGFKGNEGMVMLKRALNLVI 157 (173)
Q Consensus 100 ~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv-~~~f~vk~~~g~~~~~~l~~aL~~~l 157 (173)
++||.|+++|..+...|+...+...-...+.. .+.|+|.-. |......+++||..+-
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-g~~~d~~v~~AL~~L~ 274 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLD-AAPWEERFRDALVEIA 274 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEES-SCTTSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEe-CCcCCHHHHHHHHHHH
Confidence 58999999999999999999999988887764 677776654 5655567777776653
No 38
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=83.82 E-value=9.2 Score=26.87 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=31.5
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEE
Q 041818 94 VTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWV 137 (173)
Q Consensus 94 I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~v 137 (173)
+-+..+++||.+.+++.+|.+.|+.|...-.+..+++....|.+
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~ 118 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP 118 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence 44566799999999999999999998554433245555555533
No 39
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=83.13 E-value=3.2 Score=34.13 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=47.8
Q ss_pred eEEEEEEcc-CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE-EEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 91 MLKVTLSCE-DQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 91 ~v~I~I~c~-~r~glL~~Il~aLeelgL~Vv~a~ist~~~r-v~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
...|-+..+ ++||.|.++|..+...|+...+...-...+. ..+.|+|.-. |......++++|..+
T Consensus 201 kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-g~~~d~~v~~aL~~L 267 (313)
T 3mwb_A 201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDAD-GHATDSRVADALAGL 267 (313)
T ss_dssp EEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEE-SCTTSHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEe-CCCCcHHHHHHHHHH
Confidence 455556665 7999999999999999999988888777554 3567777655 454445666666554
No 40
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=80.36 E-value=6.2 Score=31.64 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=47.9
Q ss_pred eEEEEEEc---cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE-EEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 91 MLKVTLSC---EDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 91 ~v~I~I~c---~~r~glL~~Il~aLeelgL~Vv~a~ist~~~r-v~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
...|-+.. +++||.|.++|..+...|+...+...-...+. ..+.|+|.-. ......++++|..+
T Consensus 186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e--~~~d~~v~~aL~~L 253 (267)
T 2qmw_A 186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD--SAITTDIKKVIAIL 253 (267)
T ss_dssp CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES--CCSCHHHHHHHHHH
T ss_pred eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe--cCCcHHHHHHHHHH
Confidence 34555566 68999999999999999999999988877654 4677777766 33445677777655
No 41
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=73.59 E-value=15 Score=25.75 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=29.6
Q ss_pred EEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 041818 92 LKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV 127 (173)
Q Consensus 92 v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~ 127 (173)
..|.|..+++||.+.++...|.+.|+.|-...+...
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~ 42 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAEN 42 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEec
Confidence 456778899999999999999999998876655433
No 42
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=69.28 E-value=29 Score=25.03 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=29.5
Q ss_pred CCCeEEEEEEccC---CCCHHHHHHHHHHhCCCeEEEEE
Q 041818 88 DRGMLKVTLSCED---QPELMSDLSRALRSVKGRLVRAE 123 (173)
Q Consensus 88 ~~~~v~I~I~c~~---r~glL~~Il~aLeelgL~Vv~a~ 123 (173)
.++...|.+.... .||.+.+++.+|.+.|+.|...+
T Consensus 100 ~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 100 DDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp ESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred cCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 3456778888765 89999999999999999986643
No 43
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=65.92 E-value=33 Score=24.75 Aligned_cols=65 Identities=11% Similarity=0.067 Sum_probs=40.6
Q ss_pred cCCCeEEEEEE-ccCCCCHHHHHHHHHHhCCCeEEEE--EEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 87 RDRGMLKVTLS-CEDQPELMSDLSRALRSVKGRLVRA--EMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 87 ~~~~~v~I~I~-c~~r~glL~~Il~aLeelgL~Vv~a--~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
...+...|.|. .+++||.+.+++.+|.+.|+.|-.. +.+. +|..--+|+|.... .....+.|..+
T Consensus 21 ~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~-~g~~~isf~v~~~~----~~~a~~~l~~~ 88 (167)
T 2re1_A 21 FDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGS-EGTTDFSFTVPRGD----YKQTLEILSER 88 (167)
T ss_dssp EECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGG----HHHHHHHHHHS
T ss_pred ecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCC-CCeeEEEEEEechH----HHHHHHHHHHH
Confidence 34556778887 4889999999999999999887443 3333 34444556665432 23444555544
No 44
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=63.29 E-value=12 Score=32.11 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=45.7
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE-EEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGR-IKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~r-v~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
...|-+..+++||.|.++|..+...|+...+...-...+. ..+.|+|.-. +.....++++|..+
T Consensus 34 KTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e--h~~d~~v~~AL~eL 98 (429)
T 1phz_A 34 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD--KRTKPVLGSIIKSL 98 (429)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC--GGGHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe--eCCCHHHHHHHHHH
Confidence 4455556678899999999999999999988887776543 4677777655 33434566666544
No 45
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=61.53 E-value=21 Score=25.75 Aligned_cols=53 Identities=17% Similarity=0.036 Sum_probs=35.4
Q ss_pred CCCeEEEEEEc-cCCCCHHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEEEec
Q 041818 88 DRGMLKVTLSC-EDQPELMSDLSRALRSVKGRLVRAEMVPV---GGRIKCVLWVQGF 140 (173)
Q Consensus 88 ~~~~v~I~I~c-~~r~glL~~Il~aLeelgL~Vv~a~ist~---~~rv~~~f~vk~~ 140 (173)
..+.+.|.+.. +++||.+.+++.+|.+.|+.|--...+.. .|..--+|.+...
T Consensus 13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~ 69 (167)
T 2dt9_A 13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD 69 (167)
T ss_dssp ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG
T ss_pred eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH
Confidence 45566777765 67899999999999999987644332211 2345556666654
No 46
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=60.68 E-value=35 Score=24.96 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=26.6
Q ss_pred CCCeEEEEEE-ccCCCCHHHHHHHHHHhCCCeEEE
Q 041818 88 DRGMLKVTLS-CEDQPELMSDLSRALRSVKGRLVR 121 (173)
Q Consensus 88 ~~~~v~I~I~-c~~r~glL~~Il~aLeelgL~Vv~ 121 (173)
..+.+.|.|. .+++||.+.+++..|.+.|+.|-.
T Consensus 12 ~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~ 46 (178)
T 2dtj_A 12 DKSEAKVTVLGISDKPGEAAKVFRALADAEINIDM 46 (178)
T ss_dssp ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCE
T ss_pred cCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEE
Confidence 4556777773 578999999999999999955533
No 47
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=52.02 E-value=37 Score=28.48 Aligned_cols=63 Identities=8% Similarity=0.046 Sum_probs=47.1
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
...+-+...++||++..|...|-+.|+.|......+.|+...-++-+.... ...+++.+.|.+
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~~~--~~~~~~l~~l~~ 393 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADE--DVAEKALQAMKA 393 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCH--HHHHHHHHHHHT
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCCCC--CCCHHHHHHHhc
Confidence 345667788999999999999999999999999888888777777555431 133455555544
No 48
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=48.61 E-value=71 Score=22.83 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=40.0
Q ss_pred CCCeEEEEEEccC---CCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 88 DRGMLKVTLSCED---QPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 88 ~~~~v~I~I~c~~---r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
.++...|.+.... .||++.+++.+|.+.|+.|.-.+ +....+ +|.|... ..+...++|...+.
T Consensus 92 ~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~i--s~vv~~~----d~~~Av~~Lh~~f~ 157 (167)
T 2dt9_A 92 RPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TSEVRI--SVIIPAE----YAEAALRAVHQAFE 157 (167)
T ss_dssp ECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--ECSSEE--EEEEEGG----GHHHHHHHHHHHTC
T ss_pred eCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--ccCCEE--EEEEeHH----HHHHHHHHHHHHHc
Confidence 3455677777755 89999999999999999984443 223333 3333433 34455556655544
No 49
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=48.01 E-value=19 Score=23.60 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 041818 44 LAKTIKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 44 l~~ai~yi~~L~~~~~~l~~~~~ 66 (173)
++.||+-|.-||.++++|+.++.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~ 37 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNN 37 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999987655
No 50
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=47.61 E-value=60 Score=21.67 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=35.7
Q ss_pred EEEEEEccC-CCCHHHHHHHHHHhCC--CeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 92 LKVTLSCED-QPELMSDLSRALRSVK--GRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 92 v~I~I~c~~-r~glL~~Il~aLeelg--L~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+.+.+.... ...+++++. .++| +.|+.++|..+++..+-.+.+.-.. + ...+.+++..
T Consensus 24 vrL~f~g~~~~~PiIs~l~---~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G-~--~~~~~~ai~~ 84 (106)
T 3dhx_A 24 LRLEFTGQSVDAPLLSETA---RRFNVNNNIISAQMDYAGGVKFGIMLTEMHG-T--QQDTQAAIAW 84 (106)
T ss_dssp EEEEEEEECTTCCHHHHHH---HHSCCEEEEEEEEEEEETTEEEEEEEEEEES-C--HHHHHHHHHH
T ss_pred EEEEEcCCccChhHHHHHH---HHHCCCEEEEEEEeEEECCeeEEEEEEEEeC-C--HHHHHHHHHH
Confidence 444443332 233555544 4555 5579999999999999999888763 2 2244444443
No 51
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=47.48 E-value=76 Score=23.97 Aligned_cols=53 Identities=23% Similarity=0.253 Sum_probs=36.2
Q ss_pred CCCeEEEEEE-ccCCCCHHHHHHHHHHhCCCeE--EEEEEEeeC-CEEEEEEEEEec
Q 041818 88 DRGMLKVTLS-CEDQPELMSDLSRALRSVKGRL--VRAEMVPVG-GRIKCVLWVQGF 140 (173)
Q Consensus 88 ~~~~v~I~I~-c~~r~glL~~Il~aLeelgL~V--v~a~ist~~-~rv~~~f~vk~~ 140 (173)
..+.+.|.|. .++.||.+.+|+.+|.+.|+.| +..+++..+ +....+|.+...
T Consensus 32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~ 88 (200)
T 4go7_X 32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD 88 (200)
T ss_dssp ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG
T ss_pred cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh
Confidence 3556677765 4889999999999999999775 444454443 455566766554
No 52
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=46.36 E-value=48 Score=20.20 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhc
Q 041818 14 ERRRRLRINDQYDNLRK 30 (173)
Q Consensus 14 Er~RR~~i~~~~~~L~s 30 (173)
||++|.+......+-++
T Consensus 1 Ekr~rrrerNR~AA~rc 17 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC 17 (63)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH
Confidence 34444445555555444
No 53
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.95 E-value=49 Score=22.04 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=31.1
Q ss_pred CCeEEEEEEcc------CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEE
Q 041818 89 RGMLKVTLSCE------DQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVL 135 (173)
Q Consensus 89 ~~~v~I~I~c~------~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f 135 (173)
++.++|.++.. -.+.++..+++.+..+| +|+.++|.. ++...+|
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~~~--d~~fVtF 56 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRFVE--DKMWVTF 56 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEECS--SSEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEEec--CCEEEEE
Confidence 34577777542 12348999999999999 888888766 4455555
No 54
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=44.11 E-value=89 Score=22.66 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=39.7
Q ss_pred CCCeEEEEEEcc---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 88 DRGMLKVTLSCE---DQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 88 ~~~~v~I~I~c~---~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
.++...|.+... +.||++.+++.+|.+.|+.|.-.+ +....+ .|.|.. ...+...++|...+.
T Consensus 92 ~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~I--s~vV~~----~d~~~Av~~Lh~~F~ 157 (178)
T 2dtj_A 92 DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRI--SVLIRE----DDLDAAARALHEQFQ 157 (178)
T ss_dssp ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEE--EEEEEG----GGHHHHHHHHHHHHT
T ss_pred eCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeE--EEEEeH----HHHHHHHHHHHHHHc
Confidence 355677777775 578999999999999999986643 333332 333333 234445555555543
No 55
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=42.50 E-value=78 Score=26.96 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=40.3
Q ss_pred CeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 90 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV---GGRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 90 ~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~---~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
..+++++.+.++||+|..|..+|-+.++.+-+.-=... ++. ...+++.-. .....+.++|..+=.
T Consensus 358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~-~~~v~~th~---~~e~~~~~~~~~~~~ 425 (444)
T 3mtj_A 358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQ-VDIILLTHV---TLEKNVNAAIAKIEA 425 (444)
T ss_dssp EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------C-EEEEEEECS---EEHHHHHHHHHHHTT
T ss_pred eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCC-ceEEEEecc---CCHHHHHHHHHHHhc
Confidence 45899999999999999999999999988644321111 112 222222221 344567777766533
No 56
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=41.86 E-value=36 Score=27.72 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=42.9
Q ss_pred eEEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHH
Q 041818 91 MLKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLV 156 (173)
Q Consensus 91 ~v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~ 156 (173)
.+.|.++|.+..|+ +...+.+++. |.+.+++.+..+|++ .||..++.|..+|...
T Consensus 213 ~~~i~~H~Hnd~GlA~AN~laAv~a-Ga~~vd~tv~GlG~~----------aGN~~~E~lv~~L~~~ 268 (337)
T 3ble_A 213 DIHFEFHGHNDYDLSVANSLQAIRA-GVKGLHASINGLGER----------AGNTPLEALVTTIHDK 268 (337)
T ss_dssp TSCEEEECBCTTSCHHHHHHHHHHT-TCSEEEEBGGGCSST----------TCBCBHHHHHHHHHHH
T ss_pred CCeEEEEecCCcchHHHHHHHHHHh-CCCEEEEeccccccc----------ccchhHHHHHHHHHHh
Confidence 36789999999986 8889999986 999999999999972 3566666666555444
No 57
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=39.88 E-value=45 Score=24.04 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=28.0
Q ss_pred HHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHH
Q 041818 21 INDQYDNLRKILPNL----VKVDKASVLAKTIKTVREL 54 (173)
Q Consensus 21 i~~~~~~L~sl~P~~----~k~~k~sil~~ai~yi~~L 54 (173)
|.-.|+.|..++|.- .+.-|-.||..|.++...|
T Consensus 96 Id~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 96 IDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp HHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred cccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 667899999999942 5567999999999988765
No 58
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.32 E-value=52 Score=18.27 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=23.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 041818 38 VDKASVLAKTIKTVRELQRTVREQKALC 65 (173)
Q Consensus 38 ~~k~sil~~ai~yi~~L~~~~~~l~~~~ 65 (173)
|..+.-|+++=+-|..|+.+++.|+.++
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456779999999999999999998754
No 59
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=36.44 E-value=1.1e+02 Score=22.34 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=34.6
Q ss_pred CCeEEEEEE-ccCCCCHHHHHHHHHHhCCCeEEEE--EEEee-CCEEEEEEEEEec
Q 041818 89 RGMLKVTLS-CEDQPELMSDLSRALRSVKGRLVRA--EMVPV-GGRIKCVLWVQGF 140 (173)
Q Consensus 89 ~~~v~I~I~-c~~r~glL~~Il~aLeelgL~Vv~a--~ist~-~~rv~~~f~vk~~ 140 (173)
.+.+.|.|. .++.||.+.+|+.+|.+.|+.|.-. +++.. .|..--+|++...
T Consensus 14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~ 69 (181)
T 3s1t_A 14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD 69 (181)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh
Confidence 445556554 4678999999999999999877433 23321 4555566666654
No 60
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=36.42 E-value=1e+02 Score=21.06 Aligned_cols=51 Identities=8% Similarity=0.064 Sum_probs=41.0
Q ss_pred CCeEEEEEEccCCCCHHHHHHHHHHhC---CCeEEEEEEEeeCCEEEEEEEEEec
Q 041818 89 RGMLKVTLSCEDQPELMSDLSRALRSV---KGRLVRAEMVPVGGRIKCVLWVQGF 140 (173)
Q Consensus 89 ~~~v~I~I~c~~r~glL~~Il~aLeel---gL~Vv~a~ist~~~rv~~~f~vk~~ 140 (173)
.+.+.++|.....+++...|..+++.+ +.++ ..+-|+.|.++-.++.+...
T Consensus 34 Pc~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~ 87 (109)
T 1rwu_A 34 PTPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINAT 87 (109)
T ss_dssp CCCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCS
T ss_pred CCCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEEC
Confidence 456889999999999999999999987 5665 66788888877777766655
No 61
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=36.38 E-value=50 Score=26.33 Aligned_cols=53 Identities=19% Similarity=0.304 Sum_probs=44.1
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+.|.++|.+..|+ +...+.+++ .|.+.+++++..+|+ ..||..++.|...|..
T Consensus 198 ~~l~~H~Hnd~Gla~AN~laA~~-aGa~~vd~sv~GlGe----------raGN~~~E~vv~~L~~ 251 (293)
T 3ewb_X 198 IIFASHCHDDLGMATANALAAIE-NGARRVEGTINGIGE----------RAGNTALEEVAVALHI 251 (293)
T ss_dssp SEEEEECBCTTSCHHHHHHHHHH-TTCCEEEEBGGGCCT----------TTCBCBHHHHHHHHHH
T ss_pred ceEEEEeCCCcChHHHHHHHHHH-hCCCEEEeecccccc----------ccccHhHHHHHHHHHh
Confidence 6789999999986 888888887 799999999999997 3477777777777764
No 62
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=35.91 E-value=21 Score=27.30 Aligned_cols=47 Identities=4% Similarity=0.162 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 041818 16 RRRLRINDQYDNLRKILPNLVKVDKASVLAKTIKTVRELQRTVREQKA 63 (173)
Q Consensus 16 ~RR~~i~~~~~~L~sl~P~~~k~~k~sil~~ai~yi~~L~~~~~~l~~ 63 (173)
+=|..++.-...|+.|.- ..-.....++.+||+|++.|-.-...|+.
T Consensus 51 ~v~~Dl~~F~~QL~qL~~-~~i~~Tre~v~d~l~YLkkLD~l~~~Lq~ 97 (204)
T 2jqq_A 51 KTQSDLQKFMTQLDHLIK-DDISNTQEIIKDVLEYLKKLDEIYGSLRN 97 (204)
T ss_dssp CHHHHHHHHHHHHHHHHH-HSCSTTHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668888888888863 23335678999999999999887776654
No 63
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=34.70 E-value=1.2e+02 Score=21.53 Aligned_cols=125 Identities=12% Similarity=0.054 Sum_probs=61.6
Q ss_pred HHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCcccccceeeecCCCeEEEEEEccCC
Q 041818 22 NDQYDNLRKILPNLVKVDKASVLAKTIKTVRELQRTVREQKALCQVHEECVFPSEANELSLRNCNRDRGMLKVTLSCEDQ 101 (173)
Q Consensus 22 ~~~~~~L~sl~P~~~k~~k~sil~~ai~yi~~L~~~~~~l~~~~~~~~~~~~p~~~~~v~v~~~~~~~~~v~I~I~c~~r 101 (173)
.+.+..+..++-.. ..+=..-+..-.+-++.|++++++|+.+........ +.-......+..+.+... ...
T Consensus 13 ~~~l~~~a~~Lk~~-~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~-------l~~~~~~i~g~~~~~~~~-~~d 83 (171)
T 2zvf_A 13 ERLLREASSILRVE-PAKLPKTVERFFEEWKDQRKEIERLKSVIADLWADI-------LMERAEEFDSMKVVAEVV-DAD 83 (171)
T ss_dssp HHHHHHHHHTTTCC-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHTTCEESSSCEEEEEEC-SCC
T ss_pred HHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhcEEeCCEEEEEEEe-CCC
Confidence 44555666666322 123333455555566677777777765443221100 000011122333333322 334
Q ss_pred CCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhcCC
Q 041818 102 PELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVIDRP 160 (173)
Q Consensus 102 ~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~~~ 160 (173)
+..|-.++..|.+...-+ +-++..++ +..++.+... ......+...+...+...
T Consensus 84 ~~~lr~~~~~l~~~~~vv--~l~~~~~~-~~~v~~~~~~--~~~a~~lvk~~~~~~gGk 137 (171)
T 2zvf_A 84 MQALQKLAERLAEKGAVG--CLMAKGEG-KVFVVTFSGQ--KYDARELLREIGRVAKGS 137 (171)
T ss_dssp HHHHHHHHHHHHHTTEEE--EEEEECSS-SEEEEEEESS--SSCHHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHHHhcCCCEE--EEEEcCCC-eEEEEEECCC--CCCHHHHHHHHHHHcCCC
Confidence 567888888887662222 22233355 3333333222 367778888888887643
No 64
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=34.27 E-value=1.3e+02 Score=21.89 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=39.6
Q ss_pred CCeEEEEEEcc---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 89 RGMLKVTLSCE---DQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 89 ~~~v~I~I~c~---~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
++...|.+... ..||++.++.++|.+.|+.|.-.+ +.+-.+. |.|... ..+...++|...+.
T Consensus 94 ~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei~Is--~vV~~~----d~~~Av~aLH~~f~ 158 (181)
T 3s1t_A 94 DHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIRIS--VLCRDT----ELDKAVVALHEAFG 158 (181)
T ss_dssp SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEE--EEEEGG----GHHHHHHHHHHHHT
T ss_pred CCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cCCCEEE--EEEeHH----HHHHHHHHHHHHHc
Confidence 45566776654 689999999999999999886666 2243333 333433 33445556655553
No 65
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=33.87 E-value=49 Score=26.92 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=43.9
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+.|.++|.+..|+ +...+.+++ .|.+++.+.+..+|++ .||..++.|..+|..
T Consensus 187 ~~i~~H~Hn~~G~a~an~laA~~-aGa~~vd~si~GlG~~----------~GN~~~E~lv~~L~~ 240 (320)
T 3dxi_A 187 VPVGFHGHDNLQLGLINSITAID-DGIDFIDATITGMGRG----------AGNLKMELLLTYLNK 240 (320)
T ss_dssp SCEEEECBCTTSCHHHHHHHHHH-TTCSEEEEBGGGCSST----------TCBCBHHHHHHHHHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHH-hCCCEEEEeccccCCc----------ccchhHHHHHHHHHh
Confidence 5688999998886 777788886 6999999999999986 477888888777766
No 66
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=33.65 E-value=1.5e+02 Score=25.46 Aligned_cols=50 Identities=12% Similarity=0.176 Sum_probs=38.6
Q ss_pred eEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEec
Q 041818 91 MLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPV--GGRIKCVLWVQGF 140 (173)
Q Consensus 91 ~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~--~~rv~~~f~vk~~ 140 (173)
...+-+...++||.+..+...|-+.|+.|-+..+... ++..+-.+.+...
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~ 505 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD 505 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC
Confidence 3456667789999999999999999999998888775 4555555554443
No 67
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.04 E-value=57 Score=18.27 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 041818 44 LAKTIKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 44 l~~ai~yi~~L~~~~~~l~~~~~ 66 (173)
+.+--+||++|+++-.+|+.-++
T Consensus 5 vkelknyiqeleernaelknlke 27 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKE 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHH
Confidence 44566899999998888875443
No 68
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=32.92 E-value=1.5e+02 Score=21.94 Aligned_cols=80 Identities=10% Similarity=0.054 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHhhhc-ccccccCCCCcccccceeeecCCCeEEEEEEccCCCC------HHHHHHHHHHhCCCeEE
Q 041818 48 IKTVRELQRTVREQKALCQ-VHEECVFPSEANELSLRNCNRDRGMLKVTLSCEDQPE------LMSDLSRALRSVKGRLV 120 (173)
Q Consensus 48 i~yi~~L~~~~~~l~~~~~-~~~~~~~p~~~~~v~v~~~~~~~~~v~I~I~c~~r~g------lL~~Il~aLeelgL~Vv 120 (173)
.++...|-+++..+-.... ..+....|.+--.+.|.. ...++.+.+.+......- -+.++-+.|.+-|+.+.
T Consensus 68 ~~w~qqL~qqI~~~~~~g~q~a~IrL~PpeLG~l~V~l-~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~ 146 (169)
T 2rrl_A 68 HEWQQTFSQQVMLFTRQGQQSAQLRLHPEELGQVHISL-KLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLG 146 (169)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECCSSGGGCCEEEEE-EEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCceEEEEEECccccCcEEEEE-EEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 4778888888887654433 223344455444555544 234677999998875422 38899999999999999
Q ss_pred EEEEEeeC
Q 041818 121 RAEMVPVG 128 (173)
Q Consensus 121 ~a~ist~~ 128 (173)
.++|+..+
T Consensus 147 ~v~Vs~~~ 154 (169)
T 2rrl_A 147 QSSISSES 154 (169)
T ss_dssp EEEEESSC
T ss_pred eEEEecCC
Confidence 99987653
No 69
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=32.87 E-value=49 Score=19.92 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCC
Q 041818 12 EAERRRRLRINDQYDNLRKILPNLV 36 (173)
Q Consensus 12 ~~Er~RR~~i~~~~~~L~sl~P~~~ 36 (173)
.++|-+|...++-+..|+++-|+..
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCC
Confidence 4678888999999999999999543
No 70
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=32.27 E-value=1.2e+02 Score=21.00 Aligned_cols=56 Identities=9% Similarity=-0.092 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHhCCCeEEEEEEEeeCCEE-EEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 101 QPELMSDLSRALRSVKGRLVRAEMVPVGGRI-KCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 101 r~glL~~Il~aLeelgL~Vv~a~ist~~~rv-~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
||.-+.++.++|.+.|+..+..+.+...++- ...+.+-.. +..++.+.++|.+...
T Consensus 14 rp~kld~V~~AL~~~G~~~t~v~~~gGf~r~g~~~leivV~--De~Vd~vi~~I~~~a~ 70 (114)
T 3m05_A 14 QDKDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMIGIE--EERVPEVLEIIKKASH 70 (114)
T ss_dssp EHHHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEEEEE--GGGHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEeccccccCCEEEEEEEc--HHHHHHHHHHHHHHcC
Confidence 7888999999999999998666555443433 223333333 2556777777776654
No 71
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=31.95 E-value=55 Score=16.66 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=15.0
Q ss_pred CChhhHHHHHHHHHHHHHHH
Q 041818 38 VDKASVLAKTIKTVRELQRT 57 (173)
Q Consensus 38 ~~k~sil~~ai~yi~~L~~~ 57 (173)
+...-+|-+|.+|+...+++
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 34566889999999877653
No 72
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=31.66 E-value=2.2e+02 Score=23.58 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=36.6
Q ss_pred CCCeEEEEEE-ccCCCCHHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEEEe
Q 041818 88 DRGMLKVTLS-CEDQPELMSDLSRALRSVKGRLVRAEMVPV---GGRIKCVLWVQG 139 (173)
Q Consensus 88 ~~~~v~I~I~-c~~r~glL~~Il~aLeelgL~Vv~a~ist~---~~rv~~~f~vk~ 139 (173)
..+.+.|.|. .++.+|.+.+|+.+|.+.|+.|-.....+. .+...-+|+|..
T Consensus 261 ~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~ 316 (421)
T 3ab4_A 261 DKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPR 316 (421)
T ss_dssp ECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEET
T ss_pred eCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEec
Confidence 3556778887 578899999999999999988765543222 234455566654
No 73
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.71 E-value=37 Score=21.52 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 041818 47 TIKTVRELQRTVREQKALC 65 (173)
Q Consensus 47 ai~yi~~L~~~~~~l~~~~ 65 (173)
--.||+.|+.++.+|+...
T Consensus 27 K~~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578899988888887543
No 74
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=29.22 E-value=40 Score=20.15 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 041818 49 KTVRELQRTVREQKALCQ 66 (173)
Q Consensus 49 ~yi~~L~~~~~~l~~~~~ 66 (173)
.|+..|+.++..|+.+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~ 39 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNK 39 (55)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 688888888887776544
No 75
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=28.46 E-value=60 Score=16.05 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 041818 42 SVLAKTIKTVRELQRTVR 59 (173)
Q Consensus 42 sil~~ai~yi~~L~~~~~ 59 (173)
|-|-+|-.|+.+|..+++
T Consensus 4 sgliearkyleqlhrklk 21 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456788889988887765
No 76
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=28.38 E-value=39 Score=20.56 Aligned_cols=19 Identities=5% Similarity=0.067 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 041818 48 IKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 48 i~yi~~L~~~~~~l~~~~~ 66 (173)
-.||..|+++|+.|+....
T Consensus 48 ~~~~~~Le~ri~~Le~~l~ 66 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLT 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3899999999999987654
No 77
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=28.25 E-value=1.6e+02 Score=20.79 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHhC--CCeEEEEEEEeeCCEE----EEEEEEEeccCCccHHHHHHHHHHHhcCCCCCCC
Q 041818 101 QPELMSDLSRALRSV--KGRLVRAEMVPVGGRI----KCVLWVQGFKGNEGMVMLKRALNLVIDRPVSPGN 165 (173)
Q Consensus 101 r~glL~~Il~aLeel--gL~Vv~a~ist~~~rv----~~~f~vk~~~g~~~~~~l~~aL~~~l~~~~~~~~ 165 (173)
.+..+..+..+|++. +..-....+..+|..- -.++++....+ .....|.++|.+.+...+.+..
T Consensus 50 ~~~~~~~l~~~l~~~~~~~~pf~l~l~g~g~F~~~~~p~vl~~~v~~~-~~L~~L~~~l~~~l~~~g~~~~ 119 (184)
T 1vgj_A 50 TEEQAEEIKNILKKIAEKYKKHEVKVKGIGVFPNPNYIRVIWAGIEND-EIIREMAREIEDELAKLGFKKE 119 (184)
T ss_dssp CHHHHHHHHHHHHHHHTTSBCEEEEEEEEEEEECSSSEEEEEEEEETC-HHHHHHHHHHHHHHHTTTCCCC
T ss_pred CHHHHHHHHHHHHHHHccCCCeEEEEeeEeeCCCCCCCcEEEEEecCC-HHHHHHHHHHHHHHHHcCCCCC
Confidence 445677777777766 4444444444333211 14566665543 6788999999999988887653
No 78
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=26.78 E-value=1.3e+02 Score=19.48 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEec
Q 041818 102 PELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGF 140 (173)
Q Consensus 102 ~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~ 140 (173)
..+++.+...+ ...+.|++++|..+++..+-.+.+.-.
T Consensus 37 ~pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v~l~ 74 (100)
T 2qsw_A 37 LPIISHIVQEY-QVEVSIIQGNIQQTKQGAVGSLYIQLL 74 (100)
T ss_dssp SCHHHHHHHHH-TCEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred chHHHHHHHHh-CCCEEEEEeeceEcCCeeEEEEEEEEE
Confidence 34666665544 355668999999999999999988776
No 79
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=26.48 E-value=2.8e+02 Score=22.99 Aligned_cols=63 Identities=22% Similarity=0.247 Sum_probs=40.0
Q ss_pred CCCeEEEEEEcc---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 88 DRGMLKVTLSCE---DQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 88 ~~~~v~I~I~c~---~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
.++...|.|... ..||++.+++.+|.+.|+.|.-.+ +....+... |... ..+...++|...+.
T Consensus 341 ~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~is~v--V~~~----d~~~Av~~Lh~~f~ 406 (421)
T 3ab4_A 341 DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVL--IRED----DLDAAARALHEQFQ 406 (421)
T ss_dssp ECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EETTEEEEE--EEGG----GHHHHHHHHHHHTT
T ss_pred eCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEE--EeHH----HHHHHHHHHHHHHh
Confidence 345566777764 589999999999999999986433 334433333 3333 34455556655543
No 80
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=26.24 E-value=46 Score=20.03 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 041818 49 KTVRELQRTVREQKAL 64 (173)
Q Consensus 49 ~yi~~L~~~~~~l~~~ 64 (173)
.||..|+.+++.|+..
T Consensus 44 ~~~~~L~~ri~~Le~~ 59 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEE 59 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666666666543
No 81
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=25.83 E-value=84 Score=22.05 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 041818 14 ERRRRLRINDQYDNLRKILPNLVKVDKASVLAKTIKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 14 Er~RR~~i~~~~~~L~sl~P~~~k~~k~sil~~ai~yi~~L~~~~~~l~~~~~ 66 (173)
|+.==.++|++++.++.=++.....+.+.++..--+-|..|..+|+.|+....
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~ 60 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHS 60 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444578999999988887777777888888888889999999988875433
No 82
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=25.28 E-value=2.7e+02 Score=22.52 Aligned_cols=67 Identities=15% Similarity=0.004 Sum_probs=47.0
Q ss_pred CeEEEEEEccC-CCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHHHhc
Q 041818 90 GMLKVTLSCED-QPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNLVID 158 (173)
Q Consensus 90 ~~v~I~I~c~~-r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~~l~ 158 (173)
....+.+...+ +++++.++...+.++|+.+-.....+....+-.-|.+.... ....+++++|..++.
T Consensus 100 ~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~--~~~~~l~~~l~~l~~ 167 (415)
T 3p96_A 100 STHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPP--GADEALRTALNRVSS 167 (415)
T ss_dssp CSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCT--TCHHHHHHHHHHHHH
T ss_pred CcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCC--CCHHHHHHHHHHHhh
Confidence 45667777877 88999999999999999987777666333333335555443 456777777776543
No 83
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=25.23 E-value=53 Score=17.24 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhh
Q 041818 51 VRELQRTVREQKAL 64 (173)
Q Consensus 51 i~~L~~~~~~l~~~ 64 (173)
+++||+++..|+..
T Consensus 15 vq~lq~r~drle~t 28 (32)
T 2akf_A 15 VQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666554
No 84
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=25.03 E-value=1.5e+02 Score=19.32 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=31.7
Q ss_pred EEEEEccCCC---CHHHHHHHHHHhCC--CeEEEEEEEeeCCEEEEEEEEEec
Q 041818 93 KVTLSCEDQP---ELMSDLSRALRSVK--GRLVRAEMVPVGGRIKCVLWVQGF 140 (173)
Q Consensus 93 ~I~I~c~~r~---glL~~Il~aLeelg--L~Vv~a~ist~~~rv~~~f~vk~~ 140 (173)
.+++.-.... .+++.+ ...+| +.|++++|..+++..+-.+.+.-.
T Consensus 25 lv~l~f~g~~~~~pvis~l---~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~ 74 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQI---SRKYNIDVSILSSDLDYAGGVKFGMMVAELF 74 (101)
T ss_dssp EEEEEECTTSCSSCHHHHH---HHHSCCEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEcCCCcCchHHHHH---HHHhCCCEEEEEeeeeEcCCeeEEEEEEEEe
Confidence 5555555443 355554 44555 557999999999999999988876
No 85
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=24.46 E-value=80 Score=25.57 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=42.2
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+.|.++|.+..|+ +...+.+++ .|.+.+.+.+..+|+ ..||..++.|.-+|..
T Consensus 199 ~~i~~H~Hnd~GlA~AN~laA~~-aGa~~vd~tv~GlGe----------r~GN~~lE~vv~~L~~ 252 (325)
T 3eeg_A 199 AILSAHCHNDLGLATANSLAALQ-NGARQVECTINGIGE----------RAGNTALEEVVMAMEC 252 (325)
T ss_dssp SEEEECBCCTTSCHHHHHHHHHH-HTCCEEEEBGGGCCS----------TTCCCBHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH-hCCCEEEEecccccc----------cccchhHHHHHHHHHh
Confidence 7899999999886 788888887 699999999999997 2366666666666653
No 86
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=24.18 E-value=99 Score=25.57 Aligned_cols=53 Identities=9% Similarity=0.189 Sum_probs=41.2
Q ss_pred eEEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHH
Q 041818 91 MLKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALN 154 (173)
Q Consensus 91 ~v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~ 154 (173)
.+.|.++|.+..|+ +...+.+++ .|.+.+++.+..+|++ .||..+.+|..+|.
T Consensus 189 ~~~i~~H~Hnd~GlAvAN~laAv~-aGa~~vd~tv~GlGer----------aGN~~lE~vv~~L~ 242 (382)
T 2ztj_A 189 RVDIEFHGHNDTGCAIANAYEAIE-AGATHVDTTILGIGER----------NGITPLGGFLARMY 242 (382)
T ss_dssp TSEEEEEEBCTTSCHHHHHHHHHH-TTCCEEEEBGGGCSST----------TCBCBHHHHHHHHH
T ss_pred CCeEEEEeCCCccHHHHHHHHHHH-hCCCEEEEcccccccc----------ccchhHHHHHHHHH
Confidence 36799999999987 778888886 5999999999999972 36666666655553
No 87
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=21.59 E-value=58 Score=20.15 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 041818 48 IKTVRELQRTVREQKALCQ 66 (173)
Q Consensus 48 i~yi~~L~~~~~~l~~~~~ 66 (173)
-.||..|+.+|..|+....
T Consensus 57 ~~~~~~L~~ri~~LE~~l~ 75 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4799999999999986543
No 88
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=21.13 E-value=2.7e+02 Score=23.19 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCcccccceeeecCCCeEEEEEEccCCC-------C-HHHHHHHHH
Q 041818 41 ASVLAKTIKTVRELQRTVREQKALCQVHEECVFPSEANELSLRNCNRDRGMLKVTLSCEDQP-------E-LMSDLSRAL 112 (173)
Q Consensus 41 ~sil~~ai~yi~~L~~~~~~l~~~~~~~~~~~~p~~~~~v~v~~~~~~~~~v~I~I~c~~r~-------g-lL~~Il~aL 112 (173)
..+...|-+-+..|+.++++|+.+.... ..|++.. ....+.++|...-.+ + ||-.-++.-
T Consensus 86 ~e~~~~a~~e~~~l~~~l~~le~~l~~l---Llp~~~~---------D~~naileI~aGaGG~EA~~fa~~L~rMY~r~A 153 (371)
T 1zbt_A 86 PELEEMAKEELKNSKVAKEEYEEKLRFL---LLPKDPN---------DDKNIILEIRGAAGGDEAALFAGDLLNMYQKYA 153 (371)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTT---TSCCCTT---------TTSCEEEEEEECTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCC---------cccceEEEEEcCCCcHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888887543322 1222111 223456666653221 1 222233444
Q ss_pred HhCC--CeEEEEEEEeeCCEEEEEEEEEec
Q 041818 113 RSVK--GRLVRAEMVPVGGRIKCVLWVQGF 140 (173)
Q Consensus 113 eelg--L~Vv~a~ist~~~rv~~~f~vk~~ 140 (173)
+..| .+|++.+-+..||.--.+|.|.+.
T Consensus 154 e~~g~kvevl~~~~~~~gG~ksv~~~I~G~ 183 (371)
T 1zbt_A 154 ENQGWKFEVMEASANGVGGLKEVVAMVSGQ 183 (371)
T ss_dssp HHHTCEEEEEEEEECSSSCEEEEEEEEEST
T ss_pred HHcCCeEEEEecCCCCCCCceEEEEEEECc
Confidence 5555 445666666667777777777765
No 89
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=20.67 E-value=1.3e+02 Score=24.27 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=42.1
Q ss_pred eEEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHH
Q 041818 91 MLKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALN 154 (173)
Q Consensus 91 ~v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~ 154 (173)
.+.|.++|.+..|+ +...+.+++ .|.+.+.+.+...|++ .||..++.|..+|.
T Consensus 194 ~~pi~~H~Hn~~G~avAn~laA~~-aGa~~vd~tv~GlG~~----------aGN~~le~lv~~L~ 247 (345)
T 1nvm_A 194 ETQVGMHAHHNLSLGVANSIVAVE-EGCDRVDASLAGMGAG----------AGNAPLEVFIAVAE 247 (345)
T ss_dssp TSEEEEECBCTTSCHHHHHHHHHH-TTCCEEEEBGGGCSST----------TCBCBHHHHHHHHH
T ss_pred CceEEEEECCCccHHHHHHHHHHH-cCCCEEEecchhccCC----------ccCcCHHHHHHHHH
Confidence 47899999998886 777888876 6999999999999973 36777766666665
No 90
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=20.29 E-value=3.8e+02 Score=22.42 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=46.2
Q ss_pred CeEEEEEEccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHHH
Q 041818 90 GMLKVTLSCEDQPELMSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALNL 155 (173)
Q Consensus 90 ~~v~I~I~c~~r~glL~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~~ 155 (173)
+..+|-+...+.||+|.+|..+|-+.|+.|..-.-.+.|+.....+-+.... ...+++.++|.+
T Consensus 342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~~~~--~~~~~~~~~l~~ 405 (416)
T 3k5p_A 342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEADGVG--EASDAVLQEIRE 405 (416)
T ss_dssp SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEECCCH--HHHHHHHHHHHT
T ss_pred CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEecCCC--CCcHHHHHHHHh
Confidence 4568888889999999999999999999998888778877655555443111 233455555543
No 91
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=20.07 E-value=1.4e+02 Score=24.69 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=40.8
Q ss_pred EEEEEEccCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccCCccHHHHHHHHH
Q 041818 92 LKVTLSCEDQPEL-MSDLSRALRSVKGRLVRAEMVPVGGRIKCVLWVQGFKGNEGMVMLKRALN 154 (173)
Q Consensus 92 v~I~I~c~~r~gl-L~~Il~aLeelgL~Vv~a~ist~~~rv~~~f~vk~~~g~~~~~~l~~aL~ 154 (173)
+.|.++|.+..|+ +...+.+++ .|.+.+++.+..+|++ .||..+++|.-+|.
T Consensus 205 ~~l~~H~Hnd~GlAvAN~laAv~-aGa~~vd~tv~GlGer----------aGN~~lE~vv~~L~ 257 (370)
T 3rmj_A 205 VVWSAHCHNDLGLAVANSLAALK-GGARQVECTVNGLGER----------AGNASVEEIVMALK 257 (370)
T ss_dssp SEEEEECBCTTSCHHHHHHHHHH-TTCCEEEEBGGGCSST----------TCBCBHHHHHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHH-hCCCEEEEeccccCcc----------cccccHHHHHHHHH
Confidence 7899999999887 778888886 7999999999999972 35666666655554
Done!