BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041820
(316 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2
SV=1
Length = 402
Score = 292 bits (747), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 148/312 (47%), Positives = 199/312 (63%), Gaps = 14/312 (4%)
Query: 9 PPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCN 68
PP+NGLLV EL+ VAH V R LL+ ++++ + ++ C LC EVH+G H+IRTC
Sbjct: 88 PPDNGLLVPELVDVAHCVHRCRNMLLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCT 147
Query: 69 VAGSLA-SKEHSWKLGNVEHILSHVESFHLYDR-IGRAVSHNERLQVDQIPAVNELCIQA 126
GS + S H WK G V ++ + FHLYDR + V H+ER V +I AV ELCIQA
Sbjct: 148 GPGSGSRSATHVWKRGRVSDVVLFPKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQA 207
Query: 127 GIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSE--GIETFGFWGNRKKSSEENKS 184
G+D+ ++P++RR P Y++ G+++DFE D +SE T + EE KS
Sbjct: 208 GVDLEKFPSKRRSKPVYSIEGRIVDFED---VNDGNSELAVTSTTTLIQEDDRCKEEKKS 264
Query: 185 IDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYK 244
+ + ++ ME+W +M G+ KLM++Y V TCGYCPE+QVGPKGH+VR C+A K
Sbjct: 265 L-------KELSFETMESWFEMVLGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATK 317
Query: 245 HQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAK 304
HQMRDG HAWQEAT+DD+V P YVWHV+DP G L N LKR+YG PAV+E+ Q GA
Sbjct: 318 HQMRDGMHAWQEATIDDVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAP 377
Query: 305 VSCDYTGLMRED 316
V Y +MR D
Sbjct: 378 VPDQYNSMMRLD 389
>sp|Q9XIR4|APO1_ARATH APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2
SV=1
Length = 436
Score = 254 bits (650), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 187/323 (57%), Gaps = 20/323 (6%)
Query: 4 EKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHK 63
EK L PP+NGLLV L+PVA V L+ + ++ + ++ CS CG VHV + H
Sbjct: 111 EKQLDPPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHN 170
Query: 64 IRTCN-VAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNEL 122
IR CN S HSW G + +L VES+H+YD GR + H R + ++IPA+ EL
Sbjct: 171 IRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVEL 230
Query: 123 CIQAGIDIPQYPTRRRVFPAYNLAGKVID---FEKRFPKEDRSSE------GIETFGFWG 173
CIQAG++IP+YP RRR P + +VID + K K SS ++T G +
Sbjct: 231 CIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDTLGVFE 290
Query: 174 NRKKSSEENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPK 233
+ E+ +A M+ + K+R G++KLM+K+ V+ CGYC EV VGP
Sbjct: 291 RYPPPTPED---------IPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPW 341
Query: 234 GHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPA 293
GH V+ C +KHQ RDG+H WQ+A VD++ PP YVWHV+D K G PL L+R+YG PA
Sbjct: 342 GHSVKLCGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLK-GNPLTGNLRRFYGKAPA 400
Query: 294 VVELFAQAGAKVSCDYTGLMRED 316
+VE+ +GA+V Y +MR D
Sbjct: 401 LVEICMHSGARVPQRYKAMMRLD 423
>sp|Q8W4A5|APO2_ARATH APO protein 2, chloroplastic OS=Arabidopsis thaliana GN=APO2 PE=2
SV=1
Length = 440
Score = 244 bits (624), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 178/306 (58%), Gaps = 10/306 (3%)
Query: 12 NGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNVAG 71
NG++VK L+P+A+ V+ AR L+ + R+ K + + C C E+HVG H ++C
Sbjct: 126 NGMVVKSLVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVGPYGHPFKSCKGPN 185
Query: 72 SLASKE-HSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIDI 130
+ K H W +E ++ +E++HL+DR+G+ + H+ER + ++PAV ELCIQ G++I
Sbjct: 186 TSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVPAVVELCIQGGVEI 245
Query: 131 PQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEENKSIDVNAD 190
P++P +RR P + + F D + + I +
Sbjct: 246 PEFPAKRRRKPIIRIG------KSEFVDADETELPDPEPQPPPVPLLTELPVSEITPPSS 299
Query: 191 EAQAVAV--RGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKHQMR 248
E + V++ ++ W +MR+G KLM+ Y V+ CGYCPEV VGP GH+ +NC A+KHQ R
Sbjct: 300 EEETVSLAEETLQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGPTGHKAQNCGAFKHQQR 359
Query: 249 DGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAKVSCD 308
+GQH WQ A +DDL+PP YVWHV D +G P+ EL+ +YG PAVVE+ AQAGA V
Sbjct: 360 NGQHGWQSAVLDDLIPPRYVWHVPD-VNGPPMQRELRSFYGQAPAVVEICAQAGAVVPEH 418
Query: 309 YTGLMR 314
Y MR
Sbjct: 419 YRATMR 424
>sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2
SV=2
Length = 337
Score = 164 bits (415), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 148/300 (49%), Gaps = 35/300 (11%)
Query: 16 VKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTC-NVAGSLA 74
VKE++PVA ++ AR L++ + + K + TC C EV VG H I TC +
Sbjct: 55 VKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGN 114
Query: 75 SKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIDIPQYP 134
++ H W G++ IL VES+HL++ + H ER D++PA+ ELC QAG P+
Sbjct: 115 NRLHEWVPGSINDILVPVESYHLHNISQGVIRHQERFDYDRVPAILELCCQAGAIHPE-- 172
Query: 135 TRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEENKSIDVNADEAQA 194
E ++ N + S E+ +S+ A + +
Sbjct: 173 -----------------------------EILQYSEIHDNPQISEEDIRSLP--AGDLKY 201
Query: 195 VAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKHQMRDGQHAW 254
V + W K+R+G+ KL+ Y + C C EV VGP GH+ R C +K++ G H W
Sbjct: 202 VGANALMAWEKVRAGVKKLLLVYPSKVCKRCKEVHVGPSGHKARLCGVFKYESWRGTHYW 261
Query: 255 QEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAKVSCDYTGLMR 314
++A V+DLVP VWH + P+ LV+E + YYG PA+V L + GA V Y M+
Sbjct: 262 EKAGVNDLVPEKMVWH-RRPQDPVVLVDEGRSYYGHAPAIVSLCSHTGAIVPVKYACKMK 320
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 181 ENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNC 240
EN++ D E VA + + S I+ L++ + V TC +C EV VG +GH + C
Sbjct: 47 ENRAKDYPVKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEVFVGKEGHLIETC 106
Query: 241 QAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRY-YGMLPAVVELFA 299
++Y + + H W +++D++ PV +H+ + G ++ +R+ Y +PA++EL
Sbjct: 107 RSYIRRGNNRLHEWVPGSINDILVPVESYHLHNISQG--VIRHQERFDYDRVPAILELCC 164
Query: 300 QAGA 303
QAGA
Sbjct: 165 QAGA 168
>sp|Q2RZX7|KATG_SALRD Catalase-peroxidase OS=Salinibacter ruber (strain DSM 13855 / M31)
GN=katG PE=3 SV=1
Length = 729
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 163 SEGIETFGFWGNRKKSSEENKSIDVNADEAQAVAVRGMETWGKM 206
S G ETFGF G R+ + ++SID ++ METWG+
Sbjct: 159 SMGFETFGFAGGREDDFKPDESIDWGPEDE-------METWGRF 195
>sp|Q91MX5|PAP1_LSDV Poly(A) polymerase catalytic subunit OS=Lumpy skin disease virus
GN=PAPL PE=3 SV=1
Length = 474
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 87 HILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIDIPQYPTRRRVFPAYNLA 146
++S ++ F DR+ + E+L V + + + GI+ T++ P Y+
Sbjct: 272 QLMSMLKMFSQIDRLEDLAKNPEKLTVRLATLLEYVRVNYGINFISNQTKKNNMPMYS-- 329
Query: 147 GKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEENKSIDVNADEA 192
VID +KR D S+ +SS + +D+NAD+A
Sbjct: 330 --VIDIDKRIITVDTSNYDFPFKKCLVYLDESSLSSDILDLNADDA 373
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,517,292
Number of Sequences: 539616
Number of extensions: 5058051
Number of successful extensions: 11578
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 11548
Number of HSP's gapped (non-prelim): 11
length of query: 316
length of database: 191,569,459
effective HSP length: 117
effective length of query: 199
effective length of database: 128,434,387
effective search space: 25558443013
effective search space used: 25558443013
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)