Query 041820
Match_columns 316
No_of_seqs 94 out of 107
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 10:58:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00111 accumulation of photo 100.0 3E-135 5E-140 981.3 24.4 311 1-316 75-386 (399)
2 PF05634 APO_RNA-bind: APO RNA 100.0 5.7E-72 1.2E-76 503.8 11.8 151 1-151 53-204 (204)
3 PF05634 APO_RNA-bind: APO RNA 100.0 3E-63 6.5E-68 447.3 10.3 175 127-315 18-192 (204)
4 PLN00111 accumulation of photo 100.0 7E-56 1.5E-60 429.1 10.2 169 127-311 40-210 (399)
5 PRK11582 flagella biosynthesis 36.7 17 0.00037 33.3 1.1 26 201-234 59-84 (169)
6 TIGR03823 FliZ flagellar regul 35.3 19 0.0004 33.0 1.1 26 201-234 59-84 (168)
7 PF13887 MRF_C1: Myelin gene r 35.1 13 0.00028 26.3 0.1 23 280-302 2-24 (36)
8 TIGR03829 YokU_near_AblA uncha 34.8 18 0.00039 30.0 0.8 19 40-58 29-47 (89)
9 TIGR01463 mtaA_cmuA methyltran 31.7 24 0.00053 33.5 1.3 24 112-135 17-47 (340)
10 PF13696 zf-CCHC_2: Zinc knuck 27.4 24 0.00051 24.3 0.3 20 45-69 7-26 (32)
11 TIGR03831 YgiT_finger YgiT-typ 24.7 38 0.00082 22.8 0.9 22 37-58 23-44 (46)
12 COG1592 Rubrerythrin [Energy p 21.8 90 0.0019 28.5 3.0 41 205-245 120-160 (166)
13 KOG4693 Uncharacterized conser 21.6 2E+02 0.0044 29.1 5.5 82 131-215 287-371 (392)
14 PF10813 DUF2733: Protein of u 20.7 58 0.0013 22.6 1.2 22 135-156 8-29 (32)
No 1
>PLN00111 accumulation of photosystem one; Provisional
Probab=100.00 E-value=2.5e-135 Score=981.25 Aligned_cols=311 Identities=53% Similarity=0.946 Sum_probs=285.6
Q ss_pred CCCCccCCCCCCCccccchhhhHHHHHHHHHHHHHHHHhhcceeeeccCCCCCceeecCCCccccccccCCCCC-Ccccc
Q 041820 1 MVKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNVAGSLA-SKEHS 79 (316)
Q Consensus 1 ~~~~~~l~pP~NGllV~~LipvA~~V~~ar~~Li~gv~~L~~vvpV~~C~~C~EvhVG~~gH~i~tC~g~~~~~-~~~H~ 79 (316)
++|+|+|+||+|||||++||||||+||+||+.|++||++||+++||++|+||+|||||++||+||||+|+++++ ++.|+
T Consensus 75 ~~~~~~l~pP~NGllV~~LvpvA~ev~~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~ 154 (399)
T PLN00111 75 LQPERPLDPPKNGLLVKRLVPVAHEVYKARKLLISGVSKLLKVVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHE 154 (399)
T ss_pred cCCCccCCCCccCccccccHHHHHHHHHHHHHHHHHHHHhheEEeeeecCcCCceeECCCCccccccCCcccccccCccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cccccccceeecccceeehhccCCcccccccccCCCchhHHHHHHHhCCCCCCCCcccccccccccCCeeecccccCCCC
Q 041820 80 WKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKE 159 (316)
Q Consensus 80 W~~g~v~dvlvpve~fHL~dr~g~~I~H~eRf~~~RIPAivELCiQAGvdipeyptkrr~~Pi~~i~~r~~d~~~~~~~~ 159 (316)
|++|+|||||+|+|+||||||+|++|+|+|||+|||||||||||||||||+|||||+||++||++|+|+++|||++.+++
T Consensus 155 W~~g~v~Dvl~P~e~~Hl~D~~g~~i~h~~Rf~y~riPAVvELCiQAGa~vPeyp~~Rr~~p~~~i~~~~~~~~~~~~~~ 234 (399)
T PLN00111 155 WIPGSVEDVLVPVESYHLYDRFGKRIKHDERFDVPRIPAIVELCIQAGVDIPEYPTKRRTKPIYRIGGRIVDFEDESEEP 234 (399)
T ss_pred cccccccceeccceeeEeccCCCcccccccccccCcccHHHHHHHHcCCCCCcccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999944432
Q ss_pred CCCCccccccCccCCCcCCCCccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcceeccccCCCCceeecCCCccccc
Q 041820 160 DRSSEGIETFGFWGNRKKSSEENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRN 239 (316)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~vA~~vl~Aw~~L~~Gv~kLm~vypV~~C~yC~EVHVG~~GHkir~ 239 (316)
++.....+....++. ..+ ....+.+++||++||++||+||++|++||+|||++|||++|||||||||||+||++||
T Consensus 235 ~~~~~~~~~~~~~e~-~~~---~~~~~~~~~~l~~vA~etl~Aw~~~~~Gv~~Lm~~y~V~~C~yC~EVhVGp~GHk~r~ 310 (399)
T PLN00111 235 DPPPEGPSSPLLTEL-DDS---EIEAPSSEEELKELAEETLEAWEKVRSGVKKLMRKYPVKVCGYCPEVHVGPSGHKVRL 310 (399)
T ss_pred ccccccccccccccc-ccc---cccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCceeECCCCceeee
Confidence 222211111111110 000 0111237789999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccccccceecccCcccCCCeeEeecCCCCCCccccchhhhcCCcchhHHHHHhcCCCCCccCcccccCC
Q 041820 240 CQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAKVSCDYTGLMRED 316 (316)
Q Consensus 240 C~g~k~~~R~g~H~W~~a~vdDvv~P~~v~Hl~d~~g~~~l~he~R~~ygr~PAVVELCiQAGa~vP~~Y~~mMRlD 316 (316)
|+|||||+|||+|+||+|+|||||||+||||++|++| ++|.|++||||||||||||||+||||++|++|+||||+|
T Consensus 311 C~~~k~q~r~g~H~Wq~a~vdDlvpP~~vwH~~d~~~-~~l~~e~r~~Yg~aPAVVELC~QAGA~vP~~Y~~mMRld 386 (399)
T PLN00111 311 CGAFKHQQRDGQHGWQEATVDDLVPPNYVWHVRDQDG-PPLVNELRRYYGKAPAVVELCVQAGAIVPDKYKSMMRLD 386 (399)
T ss_pred cCCchhcccCCcccccccccccccCCceeEecCCCCC-CcccccchhhcCccchHHHHHhhhCCCCChhhhhhhhcc
Confidence 9999999999999999999999999999999999998 999999999999999999999999999999999999998
No 2
>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins.
Probab=100.00 E-value=5.7e-72 Score=503.82 Aligned_cols=151 Identities=46% Similarity=0.821 Sum_probs=149.5
Q ss_pred CCCCccCCCCCCCccccchhhhHHHHHHHHHHHHHHHHhhcceeeeccCCCCCceeecCCCccccccccCCCCC-Ccccc
Q 041820 1 MVKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNVAGSLA-SKEHS 79 (316)
Q Consensus 1 ~~~~~~l~pP~NGllV~~LipvA~~V~~ar~~Li~gv~~L~~vvpV~~C~~C~EvhVG~~gH~i~tC~g~~~~~-~~~H~ 79 (316)
++|+|+|+||+|||||++||||||+||+||++|++||++||+++||++|+||+|||||++||+||||.|+++.+ +|.|+
T Consensus 53 ~~p~r~l~pP~NGllV~~LvpvA~ev~~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~ 132 (204)
T PF05634_consen 53 GQPERPLYPPKNGLLVKELVPVAYEVLEAWETLISGVKKLMKVYPVKACGYCPEVHVGPVGHKIRTCGGFKHQSRNGQHE 132 (204)
T ss_pred cCCCCCCCCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHheeeeeeecCCCCCeEECCCcccccccCCCCccccCCccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cccccccceeecccceeehhccCCcccccccccCCCchhHHHHHHHhCCCCCCCCcccccccccccCCeeec
Q 041820 80 WKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIDIPQYPTRRRVFPAYNLAGKVID 151 (316)
Q Consensus 80 W~~g~v~dvlvpve~fHL~dr~g~~I~H~eRf~~~RIPAivELCiQAGvdipeyptkrr~~Pi~~i~~r~~d 151 (316)
|++|+|||||+|+|+|||||++|++|+|++||+|+|||||||||||||+|+|+|||+||++|||+|+||++|
T Consensus 133 W~~a~vdDvl~P~~~~Hl~D~~g~~i~he~R~~y~riPAVVELCiQAGa~vPeypt~rR~kPv~~i~~~~vd 204 (204)
T PF05634_consen 133 WQKATVDDVLPPVEVWHLRDRFGPRIKHEERFYYGRIPAVVELCIQAGADVPEYPTKRRTKPVYRIGGRIVD 204 (204)
T ss_pred ceecccccccCCceeEEecCCCCCccccccccccCccchHHHHHHhhCCcCCcccccccccceEeccceecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987
No 3
>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins.
Probab=100.00 E-value=3e-63 Score=447.30 Aligned_cols=175 Identities=39% Similarity=0.698 Sum_probs=150.5
Q ss_pred CCCCCCCCcccccccccccCCeeecccccCCCCCCCCccccccCccCCCcCCCCccccCCCCchhhHHHHHHHHHHHHHH
Q 041820 127 GIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEENKSIDVNADEAQAVAVRGMETWGKM 206 (316)
Q Consensus 127 Gvdipeyptkrr~~Pi~~i~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~vA~~vl~Aw~~L 206 (316)
-+|+|.-..|+..||-.++-++++-.+.++-+... . .+++...+..| -+++++|++||++||+||++|
T Consensus 18 ~~d~P~~~~k~ekKp~p~p~k~l~~~are~~k~~~---------~-~p~r~l~pP~N--GllV~~LvpvA~ev~~A~~~L 85 (204)
T PF05634_consen 18 NADLPRPLPKSEKKPYPTPIKELIRRAREERKARQ---------G-QPERPLYPPKN--GLLVKELVPVAYEVLEAWETL 85 (204)
T ss_pred cccCCCcCCccccCCCCccHHHHHHHHHHHHHHhh---------c-CCCCCCCCCcc--CccHHHHHHHHHHHHHHHHHH
Confidence 36898888899999988888877766653221000 0 01111111111 257899999999999999999
Q ss_pred HHHHHHHhcceeccccCCCCceeecCCCcccccccCCccccccccccceecccCcccCCCeeEeecCCCCCCccccchhh
Q 041820 207 RSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKR 286 (316)
Q Consensus 207 ~~Gv~kLm~vypV~~C~yC~EVHVG~~GHkir~C~g~k~~~R~g~H~W~~a~vdDvv~P~~v~Hl~d~~g~~~l~he~R~ 286 (316)
++||+|||++|||++|+||||||||++||++|||+|+||++|||+|+|++|+|||||||+|||||+|++| ++|.||+||
T Consensus 86 ~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~vdDvl~P~~~~Hl~D~~g-~~i~he~R~ 164 (204)
T PF05634_consen 86 ISGVKKLMKVYPVKACGYCPEVHVGPVGHKIRTCGGFKHQSRNGQHEWQKATVDDVLPPVEVWHLRDRFG-PRIKHEERF 164 (204)
T ss_pred HHHHHHHheeeeeeecCCCCCeEECCCcccccccCCCCccccCCcccceecccccccCCceeEEecCCCC-Ccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred hcCCcchhHHHHHhcCCCCCccCcccccC
Q 041820 287 YYGMLPAVVELFAQAGAKVSCDYTGLMRE 315 (316)
Q Consensus 287 ~ygr~PAVVELCiQAGa~vP~~Y~~mMRl 315 (316)
|||||||||||||||||++| +|.+|||.
T Consensus 165 ~y~riPAVVELCiQAGa~vP-eypt~rR~ 192 (204)
T PF05634_consen 165 YYGRIPAVVELCIQAGADVP-EYPTKRRT 192 (204)
T ss_pred ccCccchHHHHHHhhCCcCC-cccccccc
Confidence 99999999999999999999 69999985
No 4
>PLN00111 accumulation of photosystem one; Provisional
Probab=100.00 E-value=7e-56 Score=429.10 Aligned_cols=169 Identities=26% Similarity=0.422 Sum_probs=142.3
Q ss_pred CCCCCCCCcccccc--cccccCCeeecccccCCCCCCCCccccccCccCCCcCCCCccccCCCCchhhHHHHHHHHHHHH
Q 041820 127 GIDIPQYPTRRRVF--PAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEENKSIDVNADEAQAVAVRGMETWG 204 (316)
Q Consensus 127 Gvdipeyptkrr~~--Pi~~i~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~vA~~vl~Aw~ 204 (316)
-+|+|++.+|+..| |+-++..++-.++++.+....+. +...+..| -+++++|++||++||+||+
T Consensus 40 ~~d~pr~~~k~ekkp~~~Pm~~l~~~aR~~~~~~~~~~~------------~~l~pP~N--GllV~~LvpvA~ev~~A~~ 105 (399)
T PLN00111 40 NADLPRPYSKREKKPYPRPMKLLRREAREKKKLRKLQPE------------RPLDPPKN--GLLVKRLVPVAHEVYKARK 105 (399)
T ss_pred ccccCCCCCchhcCCCCccHHHHHHHHHHHhhhhhcCCC------------ccCCCCcc--CccccccHHHHHHHHHHHH
Confidence 46899888877666 55666666665555332111111 11111112 3688999999999999999
Q ss_pred HHHHHHHHHhcceeccccCCCCceeecCCCcccccccCCccccccccccceecccCcccCCCeeEeecCCCCCCccccch
Q 041820 205 KMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNEL 284 (316)
Q Consensus 205 ~L~~Gv~kLm~vypV~~C~yC~EVHVG~~GHkir~C~g~k~~~R~g~H~W~~a~vdDvv~P~~v~Hl~d~~g~~~l~he~ 284 (316)
.|++||+|||++|||++|+||||||||++||+||||+|+||++|||+|+|++|+|||||+|+|+|||+|++| ++|.|++
T Consensus 106 ~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~g~v~Dvl~P~e~~Hl~D~~g-~~i~h~~ 184 (399)
T PLN00111 106 LLISGVSKLLKVVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVEDVLVPVESYHLYDRFG-KRIKHDE 184 (399)
T ss_pred HHHHHHHHhheEEeeeecCcCCceeECCCCccccccCCcccccccCccccccccccceeccceeeEeccCCC-ccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred hhhcCCcchhHHHHHhcCCCCCccCcc
Q 041820 285 KRYYGMLPAVVELFAQAGAKVSCDYTG 311 (316)
Q Consensus 285 R~~ygr~PAVVELCiQAGa~vP~~Y~~ 311 (316)
||+||||||||||||||||++| +|..
T Consensus 185 Rf~y~riPAVvELCiQAGa~vP-eyp~ 210 (399)
T PLN00111 185 RFDVPRIPAIVELCIQAGVDIP-EYPT 210 (399)
T ss_pred ccccCcccHHHHHHHHcCCCCC-cccc
Confidence 9999999999999999999999 5643
No 5
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=36.67 E-value=17 Score=33.29 Aligned_cols=26 Identities=19% Similarity=0.722 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhcceeccccCCCCceeecCCC
Q 041820 201 ETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKG 234 (316)
Q Consensus 201 ~Aw~~L~~Gv~kLm~vypV~~C~yC~EVHVG~~G 234 (316)
++|..+..++.-| |+||+|+|--+..
T Consensus 59 ~~W~~lQ~~l~aL--------CRFCs~i~c~~~~ 84 (169)
T PRK11582 59 NGWQKLQQEWVAL--------CRFCSDLHCNTQS 84 (169)
T ss_pred HHHHHHHHHHHHH--------HHHhhhhhcCCCC
Confidence 4799999888776 9999999865443
No 6
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=35.34 E-value=19 Score=33.03 Aligned_cols=26 Identities=19% Similarity=0.736 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhcceeccccCCCCceeecCCC
Q 041820 201 ETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKG 234 (316)
Q Consensus 201 ~Aw~~L~~Gv~kLm~vypV~~C~yC~EVHVG~~G 234 (316)
++|..+..++.-| |+||+|+|--+..
T Consensus 59 ~~W~~lQ~~l~aL--------CRFCs~i~c~~~~ 84 (168)
T TIGR03823 59 NGWSVLQQELAAL--------CRFCSEIYCNTTS 84 (168)
T ss_pred HHHHHHHHHHHHH--------HHHhhhhhcCCCC
Confidence 4799999888776 9999999865443
No 7
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=35.10 E-value=13 Score=26.34 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.5
Q ss_pred cccchhhhcCCcchhHHHHHhcC
Q 041820 280 LVNELKRYYGMLPAVVELFAQAG 302 (316)
Q Consensus 280 l~he~R~~ygr~PAVVELCiQAG 302 (316)
++++.|-||.-+-||-|||...|
T Consensus 2 ~Vdk~rifmEnV~AvqeLck~t~ 24 (36)
T PF13887_consen 2 TVDKERIFMENVGAVQELCKLTD 24 (36)
T ss_pred cccHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999876
No 8
>TIGR03829 YokU_near_AblA uncharacterized protein, YokU family. Members of this protein family occur in various species of the genus Bacillus, always next to the gene (kamA or ablA) for lysine 2,3-aminomutase. Members have a pair of CXXC motifs, and share homology to the amino-terminal region of a family of putative transcription factors for which the C-terminal is modeled by pfam01381, a helix-turn-helix domain model. This family, however, is shorter and lacks the helix-turn-helix region. The function of this protein family is unknown, but a regulatory role in compatible solute biosynthesis is suggested by local genome context.
Probab=34.77 E-value=18 Score=30.00 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=16.4
Q ss_pred hcceeeeccCCCCCceeec
Q 041820 40 VAKSIAIYTCSLCGEVHVG 58 (316)
Q Consensus 40 L~~vvpV~~C~~C~EvhVG 58 (316)
.++-||...|..|+|.|+-
T Consensus 29 vIknVPa~~C~~CGe~y~~ 47 (89)
T TIGR03829 29 EIKETPSISCSHCGMEYQD 47 (89)
T ss_pred EEecCCcccccCCCcEeec
Confidence 4567899999999999983
No 9
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=31.65 E-value=24 Score=33.54 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.2
Q ss_pred cCCCchhHH-------HHHHHhCCCCCCCCc
Q 041820 112 QVDQIPAVN-------ELCIQAGIDIPQYPT 135 (316)
Q Consensus 112 ~~~RIPAiv-------ELCiQAGvdipeypt 135 (316)
.+||+|.+. ++..|||..+|||-+
T Consensus 17 ~~dr~Pv~~~~~~~~~~~~~~~G~~~~e~~~ 47 (340)
T TIGR01463 17 TVDDVPPCVPTQTLTTELMRECGATWPEAHR 47 (340)
T ss_pred CCCcCCcccchHHHHHHHHHHhCCcchhhcC
Confidence 489999533 999999999999954
No 10
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=27.42 E-value=24 Score=24.33 Aligned_cols=20 Identities=35% Similarity=0.806 Sum_probs=16.1
Q ss_pred eeccCCCCCceeecCCCcccccccc
Q 041820 45 AIYTCSLCGEVHVGHPPHKIRTCNV 69 (316)
Q Consensus 45 pV~~C~~C~EvhVG~~gH~i~tC~g 69 (316)
|-+.|..|+ ..||-|++|--
T Consensus 7 ~~Y~C~~C~-----~~GH~i~dCP~ 26 (32)
T PF13696_consen 7 PGYVCHRCG-----QKGHWIQDCPT 26 (32)
T ss_pred CCCEeecCC-----CCCccHhHCCC
Confidence 457888885 58999999964
No 11
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=24.65 E-value=38 Score=22.81 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=17.5
Q ss_pred HHhhcceeeeccCCCCCceeec
Q 041820 37 VTRVAKSIAIYTCSLCGEVHVG 58 (316)
Q Consensus 37 v~~L~~vvpV~~C~~C~EvhVG 58 (316)
-...++-||..-|..|+|..+.
T Consensus 23 ~~~~i~~vp~~~C~~CGE~~~~ 44 (46)
T TIGR03831 23 ELIVIENVPALVCPQCGEEYLD 44 (46)
T ss_pred EEEEEeCCCccccccCCCEeeC
Confidence 3455677899999999998764
No 12
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=21.80 E-value=90 Score=28.46 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcceeccccCCCCceeecCCCcccccccCCcc
Q 041820 205 KMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKH 245 (316)
Q Consensus 205 ~L~~Gv~kLm~vypV~~C~yC~EVHVG~~GHkir~C~g~k~ 245 (316)
.+..|+...++.-.|++|.-|.=+|.|...=+=..|+++|.
T Consensus 120 ~~~~~~Le~~~~~~~~vC~vCGy~~~ge~P~~CPiCga~k~ 160 (166)
T COG1592 120 EMFRGLLERLEEGKVWVCPVCGYTHEGEAPEVCPICGAPKE 160 (166)
T ss_pred HHHHHHHHhhhcCCEEEcCCCCCcccCCCCCcCCCCCChHH
Confidence 45555555555557999999999999988888889998764
No 13
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=21.61 E-value=2e+02 Score=29.11 Aligned_cols=82 Identities=18% Similarity=0.120 Sum_probs=48.7
Q ss_pred CCCCcccccccccccCCeeecccccCCCCCCCCccccccCccCCCcCCCCccccC--CC-CchhhHHHHHHHHHHHHHHH
Q 041820 131 PQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEENKSI--DV-NADEAQAVAVRGMETWGKMR 207 (316)
Q Consensus 131 peyptkrr~~Pi~~i~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~eL~~vA~~vl~Aw~~L~ 207 (316)
-+||+.||+.=-...++|++-|++--|.+-+++...+..+--. .+...+-|. .+ -.+.|.-+|.++.--.+...
T Consensus 287 Gk~P~aRRRqC~~v~g~kv~LFGGTsP~~~~~~Spt~~~G~~~---~~~LiD~SDLHvLDF~PsLKTLa~~~Vl~~~ldq 363 (392)
T KOG4693|consen 287 GKYPSARRRQCSVVSGGKVYLFGGTSPLPCHPLSPTNYNGMIS---PSGLIDLSDLHVLDFAPSLKTLAMQSVLMFELDQ 363 (392)
T ss_pred CCCCCcccceeEEEECCEEEEecCCCCCCCCCCCccccCCCCC---cccccccccceeeecChhHHHHHHHHHHHHhhhh
Confidence 4799999998767789999999996665322221221111100 000011110 01 13568899999888888888
Q ss_pred HHHHHHhc
Q 041820 208 SGISKLMQ 215 (316)
Q Consensus 208 ~Gv~kLm~ 215 (316)
+++..=++
T Consensus 364 s~Lp~diR 371 (392)
T KOG4693|consen 364 SELPADIR 371 (392)
T ss_pred hhcchhhh
Confidence 88765443
No 14
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=20.72 E-value=58 Score=22.57 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=18.0
Q ss_pred cccccccccccCCeeecccccC
Q 041820 135 TRRRVFPAYNLAGKVIDFEKRF 156 (316)
Q Consensus 135 tkrr~~Pi~~i~~r~~d~~~~~ 156 (316)
.|||..|+..+.|+.||-+.|+
T Consensus 8 Ckrr~n~l~Dv~G~~Inl~~dF 29 (32)
T PF10813_consen 8 CKRRHNPLKDVKGNPINLYKDF 29 (32)
T ss_pred eeccCCcccccCCCEEechhcc
Confidence 3789999999999999876643
Done!