Query 041820
Match_columns 316
No_of_seqs 94 out of 107
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 18:53:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041820.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041820hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nc8a_ g.40.1.1 (A:) HIV nucl 67.6 1 7.6E-05 27.8 1.4 20 221-245 8-27 (29)
2 d2bs2a3 d.168.1.1 (A:251-371) 47.5 4 0.00029 31.6 2.1 21 114-134 90-111 (121)
3 d1szha_ a.226.1.1 (A:) Her-1 { 33.6 4.7 0.00035 32.5 0.4 27 289-316 42-68 (147)
4 d1chua3 d.168.1.1 (A:238-353) 27.3 12 0.00089 28.4 1.8 21 114-134 86-106 (116)
5 d1neka3 d.168.1.1 (A:236-355) 25.1 16 0.0012 27.9 2.1 21 114-134 90-111 (120)
6 d1yuza2 g.41.5.1 (A:167-202) N 24.5 20 0.0015 22.6 2.1 27 45-71 4-30 (36)
7 d1kf6a3 d.168.1.1 (A:226-357) 24.4 17 0.0012 27.9 2.1 20 115-134 102-122 (132)
8 d1nnqa2 g.41.5.1 (A:135-171) R 22.8 22 0.0016 22.4 2.1 27 45-71 4-30 (37)
9 d1a6bb_ g.40.1.1 (B:) Zinc fin 22.3 16 0.0011 23.8 1.3 19 220-243 11-29 (40)
10 d2ezia_ a.4.1.2 (A:) Transposa 22.1 8.5 0.00062 27.0 -0.1 21 119-139 35-55 (75)
11 d1szha_ a.226.1.1 (A:) Her-1 { 20.2 23 0.0017 28.3 2.1 30 100-130 29-58 (147)
No 1
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=67.57 E-value=1 Score=27.84 Aligned_cols=20 Identities=40% Similarity=0.967 Sum_probs=15.9
Q ss_pred ccCCCCceeecCCCcccccccCCcc
Q 041820 221 TCGYCPEVQVGPKGHRVRNCQAYKH 245 (316)
Q Consensus 221 ~C~yC~EVHVG~~GHkir~C~g~k~ 245 (316)
.|=.| |..||.+|+|.++..
T Consensus 8 kCfNC-----GkeGH~ar~CrAPRk 27 (29)
T d1nc8a_ 8 RCWNC-----GKEGHSARQCRAPRR 27 (29)
T ss_dssp BCTTT-----SCBSSCGGGCCSSSS
T ss_pred EeecC-----CccchhhhhccCccc
Confidence 45556 678999999999864
No 2
>d2bs2a3 d.168.1.1 (A:251-371) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}
Probab=47.53 E-value=4 Score=31.62 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=17.7
Q ss_pred CCchhHHHHHHH-hCCCCCCCC
Q 041820 114 DQIPAVNELCIQ-AGIDIPQYP 134 (316)
Q Consensus 114 ~RIPAivELCiQ-AGvdipeyp 134 (316)
.|.|.|.++|.+ +|+|+.+-|
T Consensus 90 ~rfp~i~~~~~~~~GiD~~k~p 111 (121)
T d2bs2a3 90 TNLRDVQEICEYFAGIDPAEKW 111 (121)
T ss_dssp HHSHHHHHHHHHTSCCCTTTSC
T ss_pred hhhHHHHHHHHHhcCCCCCCCc
Confidence 367999999999 799987665
No 3
>d1szha_ a.226.1.1 (A:) Her-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=33.55 E-value=4.7 Score=32.47 Aligned_cols=27 Identities=19% Similarity=-0.026 Sum_probs=22.4
Q ss_pred CCcchhHHHHHhcCCCCCccCcccccCC
Q 041820 289 GMLPAVVELFAQAGAKVSCDYTGLMRED 316 (316)
Q Consensus 289 gr~PAVVELCiQAGa~vP~~Y~~mMRlD 316 (316)
.+|||.|-+|+|--.-- .+|+.||-||
T Consensus 42 ~kip~~Vy~C~Q~eLfa-~Ep~k~~NLd 68 (147)
T d1szha_ 42 PKLPGYVYKCLQNVLFA-KEPKKKINLD 68 (147)
T ss_dssp TTHHHHHHHHHHHHHTS-SCGGGCCCGG
T ss_pred CCccHHHHHHHHHHHhc-cCcccccCCC
Confidence 68999999999975543 3899999886
No 4
>d1chua3 d.168.1.1 (A:238-353) L-aspartate oxidase {Escherichia coli [TaxId: 562]}
Probab=27.32 E-value=12 Score=28.37 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=17.3
Q ss_pred CCchhHHHHHHHhCCCCCCCC
Q 041820 114 DQIPAVNELCIQAGIDIPQYP 134 (316)
Q Consensus 114 ~RIPAivELCiQAGvdipeyp 134 (316)
.|.|.|.+.|.+.|+|+-+-|
T Consensus 86 ~rfP~i~~~~~~~GiD~~~~~ 106 (116)
T d1chua3 86 QHFPMIYEKLLGLGIDLTQEP 106 (116)
T ss_dssp HHCHHHHHHHHTTTCCTTTSC
T ss_pred hhHHHHHHHHHHcCCCCCCCc
Confidence 345999999999999986644
No 5
>d1neka3 d.168.1.1 (A:236-355) Succinate dehydogenase {Escherichia coli [TaxId: 562]}
Probab=25.06 E-value=16 Score=27.94 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=17.4
Q ss_pred CCchhHHHHHHH-hCCCCCCCC
Q 041820 114 DQIPAVNELCIQ-AGIDIPQYP 134 (316)
Q Consensus 114 ~RIPAivELCiQ-AGvdipeyp 134 (316)
.|.|+|.+.|.+ +|+|+-+.|
T Consensus 90 ~rfP~i~~~~~~~~giD~~~ep 111 (120)
T d1neka3 90 SRLPGILELSRTFAHVDPVKEP 111 (120)
T ss_dssp HHCHHHHHHHHHHHCCCTTTSC
T ss_pred HHCHHHHHHHHHhcCCCCCCCc
Confidence 378999999999 699986554
No 6
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=24.50 E-value=20 Score=22.55 Aligned_cols=27 Identities=26% Similarity=0.540 Sum_probs=19.4
Q ss_pred eeccCCCCCceeecCCCccccccccCC
Q 041820 45 AIYTCSLCGEVHVGHPPHKIRTCNVAG 71 (316)
Q Consensus 45 pV~~C~~C~EvhVG~~gH~i~tC~g~~ 71 (316)
.++-|+-|+-+|.|.+.=.=..|..++
T Consensus 4 ~~~vC~vCGyi~~g~~Pe~CPvCg~~~ 30 (36)
T d1yuza2 4 KFHLCPICGYIHKGEDFEKCPICFRPK 30 (36)
T ss_dssp CEEECSSSCCEEESSCCSBCTTTCCBG
T ss_pred CEEECCCCCCEeeCCCCCcCCCCCCcH
Confidence 467899999999998765544554433
No 7
>d1kf6a3 d.168.1.1 (A:226-357) Fumarate reductase {Escherichia coli [TaxId: 562]}
Probab=24.42 E-value=17 Score=27.93 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=17.3
Q ss_pred CchhHHHHHHH-hCCCCCCCC
Q 041820 115 QIPAVNELCIQ-AGIDIPQYP 134 (316)
Q Consensus 115 RIPAivELCiQ-AGvdipeyp 134 (316)
|.|.|.|.|.+ +|+|+-+.|
T Consensus 102 rfp~i~~~~~~~~GiD~~kep 122 (132)
T d1kf6a3 102 RLPFICELAKAYVGVDPVKEP 122 (132)
T ss_dssp HCHHHHHHHHHHHCCCTTTSC
T ss_pred HHHHHHHHHHHHcCCCCCCCC
Confidence 56999999999 699987766
No 8
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=22.82 E-value=22 Score=22.40 Aligned_cols=27 Identities=26% Similarity=0.722 Sum_probs=19.5
Q ss_pred eeccCCCCCceeecCCCccccccccCC
Q 041820 45 AIYTCSLCGEVHVGHPPHKIRTCNVAG 71 (316)
Q Consensus 45 pV~~C~~C~EvhVG~~gH~i~tC~g~~ 71 (316)
.++.|+.|+.+|.|.+.=.=.-|..++
T Consensus 4 ~~~~C~vCG~i~~g~~P~~CPvCg~~~ 30 (37)
T d1nnqa2 4 KVYICPICGYTAVDEAPEYCPVCGAPK 30 (37)
T ss_dssp CEEECTTTCCEEESCCCSBCTTTCCBG
T ss_pred cEEECCCCCCEecCCCCCcCCCCCCcH
Confidence 478899999999998765444444433
No 9
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=22.31 E-value=16 Score=23.77 Aligned_cols=19 Identities=42% Similarity=1.108 Sum_probs=15.6
Q ss_pred cccCCCCceeecCCCcccccccCC
Q 041820 220 QTCGYCPEVQVGPKGHRVRNCQAY 243 (316)
Q Consensus 220 ~~C~yC~EVHVG~~GHkir~C~g~ 243 (316)
--|-||-| .||-++.|--.
T Consensus 11 DQCAyCke-----~GHW~~dCPkk 29 (40)
T d1a6bb_ 11 DQCAYCKE-----KGHWAKDCPKK 29 (40)
T ss_dssp SSCSSSCC-----TTCCTTSCSSS
T ss_pred hhhHHHhh-----cCchhhhCccC
Confidence 46999998 79999999743
No 10
>d2ezia_ a.4.1.2 (A:) Transposase {Bacteriophage mu [TaxId: 10677]}
Probab=22.07 E-value=8.5 Score=27.04 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCCCCCCccccc
Q 041820 119 VNELCIQAGIDIPQYPTRRRV 139 (316)
Q Consensus 119 ivELCiQAGvdipeyptkrr~ 139 (316)
+...|.++|...|-|.|-+|+
T Consensus 35 i~~~c~~~gl~~PS~~T~~rr 55 (75)
T d2ezia_ 35 LELAAREHGWSIPSRATAFRR 55 (75)
T ss_dssp HHHHHHHHTCCCCCHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHH
Confidence 567899999999999999887
No 11
>d1szha_ a.226.1.1 (A:) Her-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=20.22 E-value=23 Score=28.32 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=21.7
Q ss_pred ccCCcccccccccCCCchhHHHHHHHhCCCC
Q 041820 100 RIGRAVSHNERLQVDQIPAVNELCIQAGIDI 130 (316)
Q Consensus 100 r~g~~I~H~eRf~~~RIPAivELCiQAGvdi 130 (316)
.||+||+---. -=+||||.|-+|+|--+--
T Consensus 29 kFgtPirCGy~-rd~kip~~Vy~C~Q~eLfa 58 (147)
T d1szha_ 29 KFGTPIRCGYD-RDPKLPGYVYKCLQNVLFA 58 (147)
T ss_dssp HHTCCCCTTCC-SCTTHHHHHHHHHHHHHTS
T ss_pred HcCCCeecccc-cCCCccHHHHHHHHHHHhc
Confidence 57888876222 2379999999999986543
Done!