BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041822
(500 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FP3|A Chain A, Crystal Structure Of N-Acyl-D-Glucosamine 2-Epimerase From
Porcine Kidney
pdb|1FP3|B Chain B, Crystal Structure Of N-Acyl-D-Glucosamine 2-Epimerase From
Porcine Kidney
Length = 402
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
Query: 208 FAPNNKTMNILLLGFKESGDVTAMEMFYH--EMVLRGFR-PSVVTY----------NIRI 254
+ P+++ M L+G+ ESGD + +FY E R FR P + + I
Sbjct: 313 WWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFRQFRDPEYGEWFGYLNREGKVALTI 372
Query: 255 DGYCKKGCF 263
G KGCF
Sbjct: 373 KGGPFKGCF 381
>pdb|1J7V|R Chain R, Human Il-10 IL-10r1 Complex
pdb|1LQS|R Chain R, Crystal Structure Of Human Cytomegalovirus Il-10 Bound To
Soluble Human Il-10r1
pdb|1LQS|S Chain S, Crystal Structure Of Human Cytomegalovirus Il-10 Bound To
Soluble Human Il-10r1
pdb|1Y6M|R Chain R, Crystal Structure Of Epstein-Barr Virus Il-10 Complexed
With The Soluble Il-10r1 Chain
pdb|1Y6N|R Chain R, Crystal Structure Of Epstein-Barr Virus Il-10 Mutant
(A87i) Complexed With The Soluble Il-10r1 Chain
pdb|1Y6K|R Chain R, Crystal Structure Of Human Il-10 Complexed With The
Soluble Il-10r1 Chain
Length = 214
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 88 EFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT 132
EFF L H+TP P E T + +A +RY ++W +S +T
Sbjct: 16 EFFHHIL---HWTPIPQQSESTCYEVALLRYGIESWNSISQCSQT 57
>pdb|1S7I|A Chain A, 1.8 A Crystal Structure Of A Protein Of Unknown Function
Pa1349 From Pseudomonas Aeruginosa
Length = 124
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 279 LPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAME 338
L S+QT TTL H G R + P K +G + LI RDLN A++
Sbjct: 54 LQSVQTATTLRHQGG--------RLAMTDGPFAETKEQLGGF-----YLIEARDLNQALQ 100
Query: 339 LMDEMEEKRIG 349
+ ++ R+G
Sbjct: 101 IAAKIPPGRLG 111
>pdb|2ZIE|A Chain A, Crystal Structure Of Ttha0409, Putatative Dna Modification
Methylase From Thermus Thermophilus Hb8-
Selenomethionine Derivative
pdb|2ZIE|B Chain B, Crystal Structure Of Ttha0409, Putatative Dna Modification
Methylase From Thermus Thermophilus Hb8-
Selenomethionine Derivative
Length = 297
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 124 ELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIF 170
E H+ T P TLK ++ + YE L+ DR+ RE+F
Sbjct: 38 EASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVF 84
>pdb|2ZIF|A Chain A, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8- Complexed With
S- Adenosyl-L-Methionine
pdb|2ZIF|B Chain B, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8- Complexed With
S- Adenosyl-L-Methionine
pdb|2ZIG|A Chain A, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8
pdb|2ZIG|B Chain B, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8
Length = 297
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 124 ELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIF 170
E H+ T P TLK ++ + YE L+ DR+ RE+F
Sbjct: 38 EASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVF 84
>pdb|4H8E|A Chain A, Structure Of S. Aureus Undecaprenyl Diphosphate Synthase
In Complex With Fpp And Sulfate
Length = 256
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 240 LRGFRPSVVTYNIRID--GYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN 297
L+ F P ++ N++++ G+ K + E+ A L+ I + +G G
Sbjct: 100 LKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYG-GRAEL 158
Query: 298 IHQARQLFDEMPKRNLKPDI 317
+H + +FDE+ ++ L DI
Sbjct: 159 VHSIKNMFDELHQQGLNSDI 178
>pdb|2CZH|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Phosphate Ion (Orthorhombic Form)
pdb|2CZH|B Chain B, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Phosphate Ion (Orthorhombic Form)
pdb|2CZI|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Calcium And Phosphate Ions
pdb|2CZK|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Trigonal Form)
pdb|2DDK|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Orthorhombic Form)
pdb|2DDK|B Chain B, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Orthorhombic Form)
Length = 299
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 29/53 (54%)
Query: 434 SRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNL 486
+ G WEE F+ + Q+ +R Q+ + +R + +A + + + D ++++L
Sbjct: 23 AAGPWEECFQAAVQLALRAGQIIRKALTEEKRVSTKTSAADLVTETDHLVEDL 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,100,436
Number of Sequences: 62578
Number of extensions: 488844
Number of successful extensions: 1654
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1648
Number of HSP's gapped (non-prelim): 11
length of query: 500
length of database: 14,973,337
effective HSP length: 103
effective length of query: 397
effective length of database: 8,527,803
effective search space: 3385537791
effective search space used: 3385537791
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)