BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041822
(500 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2C8|PP291_ARATH Pentatricopeptide repeat-containing protein At3g61360
OS=Arabidopsis thaliana GN=At3g61360 PE=2 SV=1
Length = 498
Score = 550 bits (1416), Expect = e-155, Method: Compositional matrix adjust.
Identities = 278/458 (60%), Positives = 357/458 (77%), Gaps = 5/458 (1%)
Query: 41 NDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFT 100
N HPFP+ P+ P L +H+P ++ LS V VLGRLFAAHSNGLKALEFFK++L+ +
Sbjct: 42 NGHPFPNHPIQPILAKHIPLSS-LSPEFVSEVLGRLFAAHSNGLKALEFFKYSLKSSKSS 100
Query: 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLE 160
PT D+FEKTLHILARMRYFDQAW LM+ V++ +P+LL+ KSMSI+L +I+KF SYEETLE
Sbjct: 101 PTSDSFEKTLHILARMRYFDQAWALMAEVRKDYPNLLSFKSMSILLCKIAKFGSYEETLE 160
Query: 161 AFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLL 220
AF +ME+EIF +KFG +EFN+LL+AFCT++EMKEARS+F KL SRF P+ KTMNILLL
Sbjct: 161 AFVKMEKEIFR--KKFGVDEFNILLRAFCTEREMKEARSIFEKLHSRFNPDVKTMNILLL 218
Query: 221 GFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLP 280
GFKE+GDVTA E+FYHEMV RGF+P+ VTY IRIDG+CKK FG+A+RLFE+M+R+
Sbjct: 219 GFKEAGDVTATELFYHEMVKRGFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRLDFDI 278
Query: 281 SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELM 340
++Q +TTLIHG+G+ RN +ARQLFDE+ KR L PD GAYNA++SSL++C D++ A+++M
Sbjct: 279 TVQILTTLIHGSGVARNKIKARQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVM 338
Query: 341 DEMEEKRIGHDNVTYHTMFFGLMKSS--GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFC 398
EMEEK I D+VT+H+MF G+MKS G GVC+ Y +M E VPKT T+VMLMK FC
Sbjct: 339 KEMEEKGIEPDSVTFHSMFIGMMKSKEFGFNGVCEYYQKMKERSLVPKTPTIVMLMKLFC 398
Query: 399 VNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEA 458
N V+LGL+LW Y++++G+CPHGHAL+LL T LC+R R +AFECS Q + R R VSE
Sbjct: 399 HNGEVNLGLDLWKYMLEKGYCPHGHALELLTTALCARRRANDAFECSWQTVERGRCVSEP 458
Query: 459 SYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPPPTRQ 496
YRML+ L N +KLE+L I+ L + LPPP Q
Sbjct: 459 VYRMLETSLSSNNELKKLEELKEEIQKLHSFLPPPEIQ 496
>sp|Q9FZ19|PPR5_ARATH Putative pentatricopeptide repeat-containing protein At1g02420
OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2
Length = 491
Score = 212 bits (540), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 233/416 (56%), Gaps = 6/416 (1%)
Query: 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAW 123
LS L++ VL R+ +H N ++ LEF+++ F + + + L+IL R R FDQ W
Sbjct: 69 LSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIW 128
Query: 124 ELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV 183
EL+ +R SL++ ++M ++L R++K S +T+E+F + +R + F + FN
Sbjct: 129 ELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLV---PDFFDTACFNA 185
Query: 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGF 243
LL+ C +K M +AR+V+ L +F P+ +T NILL G+K S E F+ EM +G
Sbjct: 186 LLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSS---EEAEAFFEEMKGKGL 242
Query: 244 RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQ 303
+P VVTYN ID YCK A +L ++M P + T TT+I G GL+ +AR+
Sbjct: 243 KPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKARE 302
Query: 304 LFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLM 363
+ EM + PD+ AYNA I + R L A +L+DEM +K + + TY+ F L
Sbjct: 303 VLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLS 362
Query: 364 KSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGH 423
++ L +LY RM+ + +P T++ + L+K F + +VD+ + LW ++ +GF +
Sbjct: 363 LANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKGFGSYSL 422
Query: 424 ALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDL 479
D+L+ LC + EEA +C +M+ + + S S++ ++ + AN ++++ +L
Sbjct: 423 VSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLMELANKHDEVNNL 478
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 169 bits (427), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 121/456 (26%), Positives = 215/456 (47%), Gaps = 18/456 (3%)
Query: 25 STTTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGL 84
S S + ERI +I+ F D + TLL + LS L+E VL +L A G+
Sbjct: 58 SANDASQDAERICKILT--KFTDSKVE-TLLNE--ASVKLSPALIEEVLKKLSNA---GV 109
Query: 85 KALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144
AL FK+ F T + + L +++ F W L+ ++ LL+ ++ ++
Sbjct: 110 LALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMK--AKKLLSKETFAL 167
Query: 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKL 204
+ R ++ + +E + AF +ME F K S +FN +L + + +A+ VF K+
Sbjct: 168 ISRRYARARKVKEAIGAFHKMEEFGF----KMESSDFNRMLDTLSKSRNVGDAQKVFDKM 223
Query: 205 LS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263
RF P+ K+ ILL G+ + ++ ++ EM GF P VV Y I I+ +CK +
Sbjct: 224 KKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKY 283
Query: 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323
+A+R F EME+ C PS +LI+G G + ++ A + F+ + YNA+
Sbjct: 284 EEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNAL 343
Query: 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383
+ + + + A + +DEM K +G + TY + L++ + ++Y M
Sbjct: 344 VGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM---SC 400
Query: 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE 443
P T ++++ FC R+D+ + +W + +G P H L+T LC + +EA E
Sbjct: 401 EPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACE 460
Query: 444 CSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDL 479
+ML + + L++ L+ +K+ DL
Sbjct: 461 YFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDL 496
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 109/424 (25%), Positives = 203/424 (47%), Gaps = 12/424 (2%)
Query: 26 TTTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLK 85
++T E+ER+ ++I++ D+ + L + LS L+ VL R A
Sbjct: 124 SSTNPEEVERVCKVIDELFALDRNMEAVLDE---MKLDLSHDLIVEVLERFRHARK---P 177
Query: 86 ALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145
A FF + + F + + ILA+ R F+ ++ + LLT+++ +I
Sbjct: 178 AFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEM--GTKGLLTMETFTIA 235
Query: 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL 205
+ + + ++ + F+ M++ F K G E N LL + K KEA+ +F KL
Sbjct: 236 MKAFAAAKERKKAVGIFELMKKYKF----KIGVETINCLLDSLGRAKLGKEAQVLFDKLK 291
Query: 206 SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD 265
RF PN T +LL G+ ++ +++M+ G +P +V +N+ ++G + D
Sbjct: 292 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSD 351
Query: 266 AMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325
A++LF M+ P++++ T +I ++ A + FD+M L+PD Y +I+
Sbjct: 352 AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLIT 411
Query: 326 SLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP 385
+ L+ EL+ EM+EK D TY+ + + E ++Y++MI+ + P
Sbjct: 412 GFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEP 471
Query: 386 KTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECS 445
T M+MK + V ++G +W +I +G CP ++ +L+ GL S G+ EA
Sbjct: 472 SIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYL 531
Query: 446 KQML 449
++ML
Sbjct: 532 EEML 535
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 109/424 (25%), Positives = 203/424 (47%), Gaps = 12/424 (2%)
Query: 26 TTTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLK 85
++T E+ER+ ++I++ D+ + L + LS L+ VL R A
Sbjct: 123 SSTNPEEVERVCKVIDELFALDRNMEAVLDE---MKLDLSHDLIVEVLERFRHARK---P 176
Query: 86 ALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145
A FF + + F + + ILA+ R F+ ++ + LLT+++ +I
Sbjct: 177 AFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEM--GTKGLLTMETFTIA 234
Query: 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL 205
+ + + ++ + F+ M++ F K G E N LL + K KEA+ +F KL
Sbjct: 235 MKAFAAAKERKKAVGIFELMKKYKF----KIGVETINCLLDSLGRAKLGKEAQVLFDKLK 290
Query: 206 SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD 265
RF PN T +LL G+ ++ +++M+ G +P +V +N+ ++G + D
Sbjct: 291 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSD 350
Query: 266 AMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325
A++LF M+ P++++ T +I ++ A + FD+M L+PD Y +I+
Sbjct: 351 AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLIT 410
Query: 326 SLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP 385
+ L+ EL+ EM+EK D TY+ + + E ++Y++MI+ + P
Sbjct: 411 GFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEP 470
Query: 386 KTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECS 445
T M+MK + V ++G +W +I +G CP ++ +L+ GL S G+ EA
Sbjct: 471 SIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYL 530
Query: 446 KQML 449
++ML
Sbjct: 531 EEML 534
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/476 (23%), Positives = 229/476 (48%), Gaps = 15/476 (3%)
Query: 7 LKRSDKFPGISDRLALLFSTTTQSSEIERITRIIND--HPFPDQPLHPTLLQHLPQTTPL 64
+ R +F S A L+S++ Q ++ + + I+ P L L Q +
Sbjct: 42 INRQSRFCCKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQ---SGLRV 98
Query: 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWE 124
S +VE+VL R A GL FF+++ + H+ + A+ + A++R + W+
Sbjct: 99 SQEVVEDVLNRFRNA---GLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWD 155
Query: 125 LMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184
L++ +++ +L +++ I++ + ++ Q +E + AF+ ME+ FN L
Sbjct: 156 LINAMRK--KKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPP----NLVAFNGL 209
Query: 185 LQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFR 244
L A C K +++A+ VF + RF P++KT +ILL G+ + ++ + EM+ G
Sbjct: 210 LSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCH 269
Query: 245 PSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQL 304
P +VTY+I +D CK G +A+ + M+ C P+ + L+H G + +A
Sbjct: 270 PDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDT 329
Query: 305 FDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMK 364
F EM + +K D+ +N++I + + + ++ EM+ K + ++ + + + L++
Sbjct: 330 FLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIE 389
Query: 365 SSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHA 424
+ ++ +MI+ P T M++K FC ++ +W Y+ +G P H
Sbjct: 390 RGEKDEAFDVFRKMIKV-CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHT 448
Query: 425 LDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLD 480
+L+ GLC ++A ++M+ + S ++ L++ L++ + L+ L+
Sbjct: 449 FSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEEREDVLKFLN 504
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/424 (25%), Positives = 203/424 (47%), Gaps = 12/424 (2%)
Query: 26 TTTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLK 85
++T E+ER+ ++I++ D+ + L + LS L+ VL R A
Sbjct: 124 SSTNPEEVERVCKVIDELFALDRNMEAVLDE---MKLDLSHDLIVEVLERFRHARK---P 177
Query: 86 ALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145
A FF + + F + + ILA+ R F+ ++ + LLT+++ +I
Sbjct: 178 AFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEM--GTKGLLTMETFTIA 235
Query: 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL 205
+ + + ++ + F+ M++ F K G E N LL + K KEA+ +F KL
Sbjct: 236 MKAFAAAKERKKAVGIFELMKKYKF----KIGVETINCLLDSLGRAKLGKEAQVLFDKLK 291
Query: 206 SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD 265
RF PN T +LL G+ ++ +++M+ +G +P +V +N+ ++G + D
Sbjct: 292 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSD 351
Query: 266 AMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325
A++LF M+ P++++ T +I ++ A + FD+M L+PD Y +I+
Sbjct: 352 AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLIT 411
Query: 326 SLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP 385
+ L+ EL+ EM+EK D TY+ + + E ++Y++MI+ + P
Sbjct: 412 GFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEP 471
Query: 386 KTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECS 445
T M+MK + + ++G +W +I +G CP ++ +L+ GL G+ EA
Sbjct: 472 SIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYL 531
Query: 446 KQML 449
++ML
Sbjct: 532 EEML 535
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/480 (25%), Positives = 233/480 (48%), Gaps = 29/480 (6%)
Query: 26 TTTQSSEIERITRIINDH--PFPDQP----LHPTLLQHL-------PQTTPLSSTLVENV 72
T + +E+ II DH P P L+P+L H +T+ +S ++V V
Sbjct: 58 TPEDTQTVEKFHSIIKDHYRKNPTSPNDAILNPSLTLHALSLDFSQIETSQVSPSVVRCV 117
Query: 73 LGRLFAAHSNGL---KALEFFKFTLQ---HPHFTPTPDAFEKTLHILARMRYFDQAWELM 126
+ + + +G+ ++L FF + + H +P P + + + + ++R FD AW L+
Sbjct: 118 IEKCGSVR-HGIPLHQSLAFFNWATSRDDYDHKSPHP--YNEMIDLSGKVRQFDLAWHLI 174
Query: 127 SHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQ 186
+ ++ +++++ +I++ R + E + F+RME V + F++++
Sbjct: 175 D-LMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKI----AFSIVIS 229
Query: 187 AFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS 246
++ EA+S F L RF P+ L+ G+ +G+++ E + EM L G P+
Sbjct: 230 NLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPN 289
Query: 247 VVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFD 306
V TY+I ID C+ G A +F +M C P+ T L+ + Q+++
Sbjct: 290 VYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYN 349
Query: 307 EMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSS 366
+M K +PD YN +I + R +L A+++++ M +K+ + T++T+F + K
Sbjct: 350 QMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKR 409
Query: 367 GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALD 426
+ G ++Y +M+E K P T T +LM+ F + D+ L + + D+ P+ +
Sbjct: 410 DVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYR 469
Query: 427 LLVTGLCSRGRWEEAFECSKQMLVRRRQVSEAS-YRMLQRYLVQANANEKLEDL-DRMIK 484
LLVT C G W A++ K+M+ + S Y M+ L +A +K E+L ++MI+
Sbjct: 470 LLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQ 529
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 170/356 (47%), Gaps = 10/356 (2%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT--HPSLLTLKSMSIMLSRISKFQSYE 156
+TP ++ ++ R D+ W+L+ ++R P+ S+ +L RI K E
Sbjct: 277 YTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAE 336
Query: 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTM 215
E AF M R+ GI + + L+ FC + +++ A F ++ SR P+ T
Sbjct: 337 E---AFSEMIRQ---GILP-DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTY 389
Query: 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275
++ GF + GD+ +HEM +G P VT+ I+GYCK G DA R+ M +
Sbjct: 390 TAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQ 449
Query: 276 VACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA 335
C P++ T TTLI G ++ A +L EM K L+P+I YN++++ L + ++
Sbjct: 450 AGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEE 509
Query: 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMK 395
A++L+ E E + D VTY T+ KS ++ ++ M+ P T +LM
Sbjct: 510 AVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMN 569
Query: 396 FFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451
FC++ ++ G L +++ +G P+ + LV C R + A K M R
Sbjct: 570 GFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 625
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 149/345 (43%), Gaps = 4/345 (1%)
Query: 136 LLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMK 195
+L++ S ++ L+R+SK T R E+ V + +N+++ C +K
Sbjct: 207 VLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVC---WNVASYNIVIHFVCQLGRIK 263
Query: 196 EARSVFVKL-LSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRI 254
EA + + + L + P+ + + ++ G+ G++ + M +G +P+ Y I
Sbjct: 264 EAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSII 323
Query: 255 DGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLK 314
C+ +A F EM R LP TTLI G +I A + F EM R++
Sbjct: 324 GLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDIT 383
Query: 315 PDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKL 374
PD+ Y A+IS + D+ A +L EM K + D+VT+ + G K+ ++ ++
Sbjct: 384 PDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRV 443
Query: 375 YDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS 434
++ MI+ P T L+ C +D L + G P+ + +V GLC
Sbjct: 444 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCK 503
Query: 435 RGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDL 479
G EEA + + +Y L ++ +K +++
Sbjct: 504 SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI 548
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 128/308 (41%), Gaps = 15/308 (4%)
Query: 63 PLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQA 122
P S T E + G A H A +Q +P + + L + D A
Sbjct: 419 PDSVTFTELINGYCKAGHMK--DAFRVHNHMIQ-AGCSPNVVTYTTLIDGLCKEGDLDSA 475
Query: 123 WELMSHVQRT--HPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEE 180
EL+ + + P++ T S+ ++ + K + EE ++ E G+ +
Sbjct: 476 NELLHEMWKIGLQPNIFTYNSI---VNGLCKSGNIEEAVKLVGEFEA---AGLNA-DTVT 528
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
+ L+ A+C EM +A+ + ++L + P T N+L+ GF G + E + M+
Sbjct: 529 YTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWML 588
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
+G P+ T+N + YC + A ++++M P +T L+ G RN+
Sbjct: 589 AKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMK 648
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF 359
+A LF EM + + Y+ +I ++ + A E+ D+M + + D + F
Sbjct: 649 EAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFD--F 706
Query: 360 FGLMKSSG 367
F K G
Sbjct: 707 FSDTKYKG 714
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 1/166 (0%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
FNVL+ FC +++ + +L++ APN T N L+ + ++ A Y +M
Sbjct: 564 FNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMC 623
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
RG P TY + G+CK +A LF+EM+ S+ T + LI G +
Sbjct: 624 SRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFL 683
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEE 345
+AR++FD+M + L D ++ + + + + ++ +DE+ E
Sbjct: 684 EAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIE 729
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 187/411 (45%), Gaps = 12/411 (2%)
Query: 33 IERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLKALEFFKF 92
+ I+R+++DH P L TL+ + P+ +SS LVE VL R + G A FF +
Sbjct: 38 VNEISRVLSDHRNPKDDLEHTLVAYSPR---VSSNLVEQVLKR---CKNLGFPAHRFFLW 91
Query: 93 TLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152
+ P F + +++ + IL + F W+ + + + ++ K I+ S+
Sbjct: 92 ARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRA 151
Query: 153 QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPN 211
E AF+RM + GI+ ++ + LL + C +K + A+ F K P+
Sbjct: 152 NLPSEACRAFNRM---VEFGIKP-CVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPS 207
Query: 212 NKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFE 271
KT +IL+ G+ D + + EM+ R ++ YN +D CK G ++F+
Sbjct: 208 AKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQ 267
Query: 272 EMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCR 331
EM + P + IH ++H A ++ D M + +L P++ +N +I +L +
Sbjct: 268 EMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNE 327
Query: 332 DLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVV 391
++ A L+DEM +K D TY+++ + KL RM K +P T
Sbjct: 328 KVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYN 387
Query: 392 MLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLC-SRGRWEEA 441
M++K R D +W + +R F P +++ GL +G+ EEA
Sbjct: 388 MVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEA 438
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 124/293 (42%), Gaps = 2/293 (0%)
Query: 179 EEFNVLLQAFCTQKEMKEARSVFVKL--LSRFAPNNKTMNILLLGFKESGDVTAMEMFYH 236
E +++L++ + K+ ++ + F ++K I+ + + + ++
Sbjct: 103 ESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFN 162
Query: 237 EMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVR 296
MV G +P V + + C K A F + + +PS +T + L+ G +R
Sbjct: 163 RMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIR 222
Query: 297 NIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYH 356
+ AR++FDEM +RN D+ AYNA++ +L + D++ ++ EM + D ++
Sbjct: 223 DASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFA 282
Query: 357 TMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR 416
+ + K+ DRM VP T ++K C N +VD L +I +
Sbjct: 283 IFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQK 342
Query: 417 GFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQ 469
G P + ++ C A + +M + +Y M+ + L++
Sbjct: 343 GANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIR 395
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/394 (27%), Positives = 186/394 (47%), Gaps = 15/394 (3%)
Query: 60 QTTPLSSTLVENVLGRLFAAHSNGLKALEFFKF-TLQHPHFTPTPDAFEKTLHILARMRY 118
+TTP + LV +VL RL+ ++G KAL+FF F H + +F+ + I AR+
Sbjct: 50 KTTPWTPNLVNSVLKRLW---NHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHL 106
Query: 119 FDQAWELMSHVQ--RTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRM-EREIFVGIRK 175
W L+ ++ R PS K+ +I+ R + ++ ++ F M E F +
Sbjct: 107 HPTVWSLIHRMRSLRIGPSP---KTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDL-- 161
Query: 176 FGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFY 235
FN +L C K +++A +F L RF+ + T N++L G+
Sbjct: 162 ---ASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVL 218
Query: 236 HEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLV 295
EMV RG P++ TYN + G+ + G A F EM++ C + T TT++HG G+
Sbjct: 219 KEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVA 278
Query: 296 RNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTY 355
I +AR +FDEM + + P + YNAMI L + ++ A+ + +EM + + TY
Sbjct: 279 GEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTY 338
Query: 356 HTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLID 415
+ + GL + +L RM P +T M+++++ V+ L L+ +
Sbjct: 339 NVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGS 398
Query: 416 RGFCPHGHALDLLVTGLCSRGRWEEAFECSKQML 449
P+ ++L++G+ R R E+ K +L
Sbjct: 399 GDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLL 432
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 119/269 (44%), Gaps = 1/269 (0%)
Query: 207 RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDA 266
R P+ KT I+ + +G + M G + ++N +D CK A
Sbjct: 121 RIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKA 180
Query: 267 MRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISS 326
LF + + ++ T +++G L++ +A ++ EM +R + P++ YN M+
Sbjct: 181 YELFRALRGRFSVDTV-TYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKG 239
Query: 327 LIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK 386
R + A E EM+++ D VTY T+ G + ++ ++D MI +P
Sbjct: 240 FFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPS 299
Query: 387 TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSK 446
T +++ C V+ + ++ ++ RG+ P+ ++L+ GL G + E +
Sbjct: 300 VATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQ 359
Query: 447 QMLVRRRQVSEASYRMLQRYLVQANANEK 475
+M + + +Y M+ RY + + EK
Sbjct: 360 RMENEGCEPNFQTYNMMIRYYSECSEVEK 388
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 21/171 (12%)
Query: 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQR--THPSLLTLKSMSIMLSRISKFQSYEET 158
P+ + + +L + + A + + R P++ T + L +F EE
Sbjct: 298 PSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEEL 357
Query: 159 LEAFDRMEREIFVGIRKFGSE----EFNVLLQAFCTQKEMKEARSVFVKLLSRFA-PNNK 213
++ RME E G E +N++++ + E+++A +F K+ S PN
Sbjct: 358 MQ---RMENE--------GCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLD 406
Query: 214 TMNILLLGF---KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261
T NIL+ G K S D+ EMV RGF P T+N ++G G
Sbjct: 407 TYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTG 457
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 108/397 (27%), Positives = 187/397 (47%), Gaps = 13/397 (3%)
Query: 51 HPTLLQHLPQT-TPLSSTLVENVLGRLFAAHSNGL-KALEFFKFTLQHPHFTPTPDAFEK 108
H +++ L + ++ +LV VL R SNG +A FF + + + +
Sbjct: 116 HEDVVKELSKCDVVVTESLVLQVLRRF----SNGWNQAYGFFIWANSQTGYVHSGHTYNA 171
Query: 109 TLHILARMRYFDQAWELMSHVQRTHPS-LLTLKSMSIMLSRISKFQSYEETLEAFDRMER 167
+ +L + R FD WEL++ + + S L+TL +MS ++ R++K Y + ++AF ME+
Sbjct: 172 MVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEK 231
Query: 168 EIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD 227
V K + N L+ A + ++ A VF+KL P+ +T NIL+ GF ++
Sbjct: 232 SYGV---KTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARK 288
Query: 228 VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITT 287
M + F P VVTY ++ YCK+G F + EEM C P++ T T
Sbjct: 289 FDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTI 348
Query: 288 LIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKR 347
++H G + + +A ++++M + PD Y+++I L + A E+ ++M +
Sbjct: 349 VMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQG 408
Query: 348 IGHDNVTYHTMFFGLMKSSGLEGVCKLYDRM--IEGKFV-PKTRTVVMLMKFFCVNFRVD 404
+ D + Y+TM + S E +L RM EG+ P T L+K C ++
Sbjct: 409 VRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKKKMK 468
Query: 405 LGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
L L +++ LL+ GLC G+ EEA
Sbjct: 469 LLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEA 505
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/452 (24%), Positives = 198/452 (43%), Gaps = 19/452 (4%)
Query: 30 SSEIERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLKALEF 89
+S++E+ RI+ L L + + P L+E VL R A + G + F
Sbjct: 80 ASDVEKSYRILRKFHSRVPKLELALNESGVELRP---GLIERVLNRCGDAGNLGYR---F 133
Query: 90 FKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRI 149
F + + P + + + ++ + IL++MR F W L+ +++ +P L+ + +++ R
Sbjct: 134 FVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRF 193
Query: 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEE----FNVLLQAFCTQKEMKEARSVFVKLL 205
+ ++ +E D M KFG E F LL A C +K+A +F +
Sbjct: 194 ASADMVKKAIEVLDEMP--------KFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMR 245
Query: 206 SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD 265
RF N + LL G+ G + + +M GF P +V Y + GY G D
Sbjct: 246 MRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMAD 305
Query: 266 AMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325
A L +M R P+ T LI V + +A ++F EM + + D+ Y A++S
Sbjct: 306 AYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVS 365
Query: 326 SLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP 385
+ ++ ++D+M +K + +TY + K E +L ++M + ++ P
Sbjct: 366 GFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHP 425
Query: 386 KTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECS 445
++++ C V + LW + + G P +++ GL S+G EA +
Sbjct: 426 DIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHF 485
Query: 446 KQMLVRRRQVSEASYRMLQRYLVQANANEKLE 477
K+M V R S + Y L+ L ++KLE
Sbjct: 486 KEM-VTRGLFSVSQYGTLKLLLNTVLKDKKLE 516
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 104/255 (40%), Gaps = 41/255 (16%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFA--PNNKTMNILLLGFKESGDVTAMEMFYHEM 238
+ VL+QA C M+EA VFV++ R+ + T L+ GF + G + + +M
Sbjct: 325 YTVLIQALCKVDRMEEAMKVFVEM-ERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDM 383
Query: 239 VLRGFRPSVVTY-----------------------------------NIRIDGYCKKGCF 263
+ +G PS +TY N+ I CK G
Sbjct: 384 IKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEV 443
Query: 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNL--KPDIGAYN 321
+A+RL+ EME P + T +I+G + +A F EM R L G
Sbjct: 444 KEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLK 503
Query: 322 AMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEG-VCKLYDRMIE 380
+++++++ + L A ++ + K NV T++ + S G E C MIE
Sbjct: 504 LLLNTVLKDKKLEMAKDVWSCITSKGACELNVLSWTIWIHALFSKGYEKEACSYCIEMIE 563
Query: 381 GKFVPKTRTVVMLMK 395
F+P+ T LMK
Sbjct: 564 MDFMPQPDTFAKLMK 578
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 112/466 (24%), Positives = 205/466 (43%), Gaps = 39/466 (8%)
Query: 49 PLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEK 108
P T+ P + LSST V+ L + + AL F + P+F+P P +E+
Sbjct: 31 PPSSTISFASPHSAALSSTDVK--LLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEE 88
Query: 109 TLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMERE 168
L L R FD +++ ++ + + T + I++ ++F+ +E L D M E
Sbjct: 89 ILLRLGRSGSFDDMKKILEDMKSSRCEMGT-STFLILIESYAQFELQDEILSVVDWMIDE 147
Query: 169 IFV---------------------------------GIRKFGSEEFNVLLQAFCTQKEMK 195
+ GI+ S FNVL++A C +++
Sbjct: 148 FGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVS-TFNVLIKALCRAHQLR 206
Query: 196 EARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRI 254
A + + S P+ KT ++ G+ E GD+ +MV G S V+ N+ +
Sbjct: 207 PAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIV 266
Query: 255 DGYCKKGCFGDAMRLFEEM-ERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNL 313
G+CK+G DA+ +EM + P T TL++G ++ A ++ D M +
Sbjct: 267 HGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGY 326
Query: 314 KPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCK 373
PD+ YN++IS L + ++ A+E++D+M + + VTY+T+ L K + +E +
Sbjct: 327 DPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATE 386
Query: 374 LYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLC 433
L + +P T L++ C+ + + L+ + +G P ++L+ LC
Sbjct: 387 LARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLC 446
Query: 434 SRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDL 479
S+G+ +EA KQM + S +Y L +AN + E++
Sbjct: 447 SKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEI 492
Score = 118 bits (296), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 107/433 (24%), Positives = 187/433 (43%), Gaps = 16/433 (3%)
Query: 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWEL 125
S + NV+ F AL F + F P F ++ L + + A E+
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317
Query: 126 MSHV--QRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRM-EREIFVGIRKFGSEEFN 182
M + + P + T S+ +S + K +E +E D+M R+ + +N
Sbjct: 318 MDVMLQEGYDPDVYTYNSV---ISGLCKLGEVKEAVEVLDQMITRDC-----SPNTVTYN 369
Query: 183 VLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGD-VTAMEMFYHEMVL 240
L+ C + +++EA + L S+ P+ T N L+ G + + AME+F EM
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF-EEMRS 428
Query: 241 RGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQ 300
+G P TYN+ ID C KG +A+ + ++ME C S+ T TLI G +
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTRE 488
Query: 301 ARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFF 360
A ++FDEM + + YN +I L + R + A +LMD+M + D TY+++
Sbjct: 489 AEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLT 548
Query: 361 GLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420
+ ++ + M P T L+ C RV++ L + +G
Sbjct: 549 HFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINL 608
Query: 421 HGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEA-SYRMLQRYLVQANANEKLEDL 479
HA + ++ GL + + EA ++ML + +A SYR++ R L + E +
Sbjct: 609 TPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIR-EAV 667
Query: 480 DRMIKNLQAVLPP 492
D +++ L+ P
Sbjct: 668 DFLVELLEKGFVP 680
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 2/179 (1%)
Query: 307 EMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSS 366
+M +KPD+ +N +I +L R L A+ ++++M + D T+ T+ G ++
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEG 238
Query: 367 GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR-GFCPHGHAL 425
L+G ++ ++M+E +V +++ FC RV+ LN + ++ GF P +
Sbjct: 239 DLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298
Query: 426 DLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQ-ANANEKLEDLDRMI 483
+ LV GLC G + A E ML +Y + L + E +E LD+MI
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMI 357
>sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420,
mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2
SV=1
Length = 509
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 115/436 (26%), Positives = 193/436 (44%), Gaps = 29/436 (6%)
Query: 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAW 123
L+ L+ L RL N AL FF++ P + TP +F + IL R+R FD
Sbjct: 69 LTPNLIHQTLLRL---RHNSKIALSFFQYLRSLPSPSTTPTSFNLIIDILGRVRQFDVVR 125
Query: 124 ELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV 183
+L+ + +T P ++ I++ R+ + + AFD + F+ R+F EF
Sbjct: 126 QLIVEMDQTSP-----ETFLILVKRLIAAGLTRQAVRAFD--DAPCFLENRRFRLVEFGF 178
Query: 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGF 243
LL C K A VF + F + K IL+ G+ + + E F EM+ G
Sbjct: 179 LLDTLCKYGYTKMAVGVFNERKEEFGSDEKVYTILIAGWCKLRRIDMAEKFLVEMIESGI 238
Query: 244 RPSVVTYNIRIDGYCKKGCFG----------DAMRLFEEMERVACLPSLQTITTLIHGAG 293
P+VVTYN+ ++G C+ +A ++F+EM + P + + + ++H
Sbjct: 239 EPNVVTYNVLLNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEPDVTSFSIVLH--- 295
Query: 294 LVRNIHQARQLFDE---MPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGH 350
+ H+A D+ M + + P I Y +++ L C L A EL++ M E I
Sbjct: 296 MYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMVESGISP 355
Query: 351 DNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLW 410
+ TY+ F G LY +M G P T+T +L+ F +++ +W
Sbjct: 356 SSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQTYNVLLGTFINLGKMETVKEIW 415
Query: 411 GYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQA 470
L P + LV GLCS+ +W+EA +M+ R + ++ L + L+Q+
Sbjct: 416 DDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQKLTFETLYKGLIQS 475
Query: 471 NANEKLEDLDRMIKNL 486
N K+ R+ K L
Sbjct: 476 N---KMRTWRRLKKKL 488
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 125/288 (43%), Gaps = 18/288 (6%)
Query: 107 EKTLHIL----ARMRYFDQAWELMSHVQRT--HPSLLTLKSMSIMLSRISKFQSY--EET 158
EK IL ++R D A + + + + P+++T +++L+ I + S EE
Sbjct: 207 EKVYTILIAGWCKLRRIDMAEKFLVEMIESGIEPNVVT---YNVLLNGICRTASLHPEER 263
Query: 159 LEAFDRMEREIFVGIRKFGSE----EFNVLLQAFCTQKEMKEARSVFVKLLSR--FAPNN 212
E R ++F +R+ G E F+++L + ++ E +KL+ +P
Sbjct: 264 FERNVRNAEKVFDEMRQRGIEPDVTSFSIVLHMY-SRAHKAELTLDKMKLMKAKGISPTI 322
Query: 213 KTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEE 272
+T ++ G + E MV G PS TYN Y + AM L+ +
Sbjct: 323 ETYTSVVKCLCSCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRK 382
Query: 273 MERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRD 332
M+ C PS QT L+ + + ++++D++ PD+ +Y +++ L
Sbjct: 383 MKNGLCKPSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEK 442
Query: 333 LNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380
A EM E+ +T+ T++ GL++S+ + +L ++ E
Sbjct: 443 WKEACGYFVEMIERGFLPQKLTFETLYKGLIQSNKMRTWRRLKKKLDE 490
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 5/211 (2%)
Query: 139 LKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEAR 198
+ S SI+L S+ E TL+ M+ + GI E + +++ C+ ++EA
Sbjct: 287 VTSFSIVLHMYSRAHKAELTLDKMKLMKAK---GISP-TIETYTSVVKCLCSCGRLEEAE 342
Query: 199 SVFVKLL-SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257
+ ++ S +P++ T N +K D Y +M +PS TYN+ + +
Sbjct: 343 ELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQTYNVLLGTF 402
Query: 258 CKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDI 317
G ++++++ P L + T+L+HG +A F EM +R P
Sbjct: 403 INLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQK 462
Query: 318 GAYNAMISSLIRCRDLNAAMELMDEMEEKRI 348
+ + LI+ + L +++E+ I
Sbjct: 463 LTFETLYKGLIQSNKMRTWRRLKKKLDEESI 493
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 135 bits (340), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 123/519 (23%), Positives = 218/519 (42%), Gaps = 50/519 (9%)
Query: 13 FPGISDRLAL----LFSTTTQSSEIERITRII---NDHPFPDQPLHPTLLQHLPQTTPLS 65
FPG + RL L ++S + I+ N H + L + +P T
Sbjct: 161 FPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTL--- 217
Query: 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWEL 125
V+ + F A + AL + +H P ++ +H L++ ++A +L
Sbjct: 218 --FTFGVVMKAFCAVNEIDSALSLLRDMTKH-GCVPNSVIYQTLIHSLSKCNRVNEALQL 274
Query: 126 MSH--VQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFV-----------G 172
+ + P T + + L KF E + +RM F G
Sbjct: 275 LEEMFLMGCVPDAETFNDVILGLC---KFDRINEAAKMVNRMLIRGFAPDDITYGYLMNG 331
Query: 173 IRKFGSEE----------------FNVLLQAFCTQKEMKEARSVFVKLLSRFA--PNNKT 214
+ K G + FN L+ F T + +A++V +++ + P+ T
Sbjct: 332 LCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCT 391
Query: 215 MNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEME 274
N L+ G+ + G V H+M +G +P+V +Y I +DG+CK G +A + EM
Sbjct: 392 YNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMS 451
Query: 275 RVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLN 334
P+ LI I +A ++F EMP++ KPD+ +N++IS L ++
Sbjct: 452 ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIK 511
Query: 335 AAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLM 394
A+ L+ +M + + + VTY+T+ ++ ++ KL + M+ T L+
Sbjct: 512 HALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLI 571
Query: 395 KFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQ 454
K C VD +L+ ++ G P + ++L+ GLC G EEA E K+M++R
Sbjct: 572 KGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGST 631
Query: 455 VSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPPP 493
++ L L +A ++ED M + LQA PP
Sbjct: 632 PDIVTFNSLINGLCRAG---RIEDGLTMFRKLQAEGIPP 667
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 133/296 (44%), Gaps = 8/296 (2%)
Query: 103 PDAFEKTLHI--LARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLE 160
P+ + T+ + ++ D+A+ +++ + T+ + ++S K E +E
Sbjct: 422 PNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTV-GFNCLISAFCKEHRIPEAVE 480
Query: 161 AFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILL 219
F M R+ G + FN L+ C E+K A + ++S N T N L+
Sbjct: 481 IFREMPRK---GCKP-DVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLI 536
Query: 220 LGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACL 279
F G++ +EMV +G +TYN I G C+ G A LFE+M R
Sbjct: 537 NAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHA 596
Query: 280 PSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMEL 339
PS + LI+G + +A + EM R PDI +N++I+ L R + + +
Sbjct: 597 PSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTM 656
Query: 340 MDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMK 395
+++ + I D VT++T+ L K + C L D IE FVP RT +L++
Sbjct: 657 FRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQ 712
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 116/258 (44%), Gaps = 3/258 (1%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGF-KESGDVTAMEMFYHEM 238
+ +L+ FC ++ EA +V ++ + PN N L+ F KE A+E+F EM
Sbjct: 427 YTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIF-REM 485
Query: 239 VLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNI 298
+G +P V T+N I G C+ A+ L +M + + T TLI+ I
Sbjct: 486 PRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEI 545
Query: 299 HQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTM 358
+AR+L +EM + D YN++I L R +++ A L ++M N++ + +
Sbjct: 546 KEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNIL 605
Query: 359 FFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418
GL +S +E + M+ P T L+ C R++ GL ++ L G
Sbjct: 606 INGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGI 665
Query: 419 CPHGHALDLLVTGLCSRG 436
P + L++ LC G
Sbjct: 666 PPDTVTFNTLMSWLCKGG 683
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 30/276 (10%)
Query: 190 TQKEMKEARSVFVKLLSRFAPNN--KTMNILLLGFKESGDVTAMEMFYHEMVLRGF---- 243
+Q + + V+ L+ + N KT++ LL+ K+ G V +F ++R +
Sbjct: 103 SQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFIS--IMRDYDKAG 160
Query: 244 ------------------RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTI 285
P+ +YN+ ++ C A +F +M P+L T
Sbjct: 161 FPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTF 220
Query: 286 TTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEE 345
++ V I A L +M K P+ Y +I SL +C +N A++L++EM
Sbjct: 221 GVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFL 280
Query: 346 KRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDL 405
D T++ + GL K + K+ +RM+ F P T LM C RVD
Sbjct: 281 MGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDA 340
Query: 406 GLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
+L+ Y I + P + L+ G + GR ++A
Sbjct: 341 AKDLF-YRIPK---PEIVIFNTLIHGFVTHGRLDDA 372
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 135 bits (340), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 114/471 (24%), Positives = 201/471 (42%), Gaps = 26/471 (5%)
Query: 30 SSEIERITRIINDHPFPDQPLHPTLLQHLPQT-TPLSSTLVENVLGRLFAAHSNGLKALE 88
+ E+E+I RI+ +H P L L ++ L L+ VL R A + G +
Sbjct: 64 AGEVEKIYRILRNH----HSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYR--- 116
Query: 89 FFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSR 148
FF + + P + + + + + IL++MR F W L+ +++T+P L+ + +++ R
Sbjct: 117 FFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRR 176
Query: 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEE----FNVLLQAFCTQKEMKEARSVFVKL 204
+ ++ +E D M K+G E F LL A C +KEA VF +
Sbjct: 177 FASANMVKKAVEVLDEMP--------KYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDM 228
Query: 205 LSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFG 264
+F PN + LL G+ G + + +M G P +V + + GY G
Sbjct: 229 REKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMA 288
Query: 265 DAMRLFEEMERVACLPSLQTITTLIHG-AGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323
DA L +M + P++ T LI + + +A ++F EM + + DI Y A+
Sbjct: 289 DAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTAL 348
Query: 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383
IS + ++ ++D+M +K + VTY + K E +L ++M
Sbjct: 349 ISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGC 408
Query: 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE 443
P ++++ C V + LW + G P +++ G S+G EA
Sbjct: 409 HPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACN 468
Query: 444 CSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPPPT 494
K+M V R S Y L+ L ++KLE M K++ + + T
Sbjct: 469 HFKEM-VSRGIFSAPQYGTLKSLLNNLVRDDKLE----MAKDVWSCISNKT 514
>sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010,
mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2
SV=2
Length = 572
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 107/450 (23%), Positives = 204/450 (45%), Gaps = 15/450 (3%)
Query: 20 LALLFSTTTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAA 79
L S S ++ +I++++ D + L L + P S+ LV +L R+
Sbjct: 84 LGCSISDELVSEDVGKISKLVKDCGSDRKELRNKLEE--CDVKP-SNELVVEILSRV--- 137
Query: 80 HSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTL 139
++ A FF + + + + + + IL +MR FD AW L+ +++ PSL+
Sbjct: 138 RNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNS 197
Query: 140 KSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARS 199
+++ IM+ + + + F +R + G ++F LL A C K + +A
Sbjct: 198 QTLLIMIRKYCAVHDVGKAINTFHAYKRFKL----EMGIDDFQSLLSALCRYKNVSDAGH 253
Query: 200 VFVKLLSRFAPNNKTMNILLLGFKES-GDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258
+ ++ + K+ NI+L G+ G E + EM G + VV+Y+ I Y
Sbjct: 254 LIFCNKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYS 313
Query: 259 KKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEM-PKRNLKPDI 317
K G ++LF+ M++ P + ++H + +AR L M ++ ++P++
Sbjct: 314 KGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNV 373
Query: 318 GAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDR 377
YN++I L + R A ++ DEM EK + TYH F ++++ E V +L +
Sbjct: 374 VTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHA-FMRILRTG--EEVFELLAK 430
Query: 378 MIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGR 437
M + P T +ML++ C D L LW + ++ P + +++ GL G+
Sbjct: 431 MRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGK 490
Query: 438 WEEAFECSKQMLVRRRQVSEASYRMLQRYL 467
EEA+ K+M + + +E M+Q +
Sbjct: 491 IEEAYGYYKEMKDKGMRPNENVEDMIQSWF 520
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 168/375 (44%), Gaps = 14/375 (3%)
Query: 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLE 160
P+ F K L +A+M FD L +Q S L + SI+++ + L
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISH-NLYTYSILINCFCRRSQLSLALA 137
Query: 161 AFDRMEREIFVGIRKFGSE----EFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTM 215
+M K G E N LL FC + +A S+ +++ + P++ T
Sbjct: 138 VLAKM--------MKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTF 189
Query: 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275
N L+ G + MV++G +P +VTY I ++G CK+G A+ L ++ME+
Sbjct: 190 NTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQ 249
Query: 276 VACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA 335
P + T+I +N++ A LF EM + ++P++ YN++I L +
Sbjct: 250 GKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSD 309
Query: 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMK 395
A L+ +M E++I + VT+ + +K L KLYD MI+ P T L+
Sbjct: 310 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 369
Query: 396 FFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQV 455
FC++ R+D +++ +I + P+ + L+ G C R +E E ++M R
Sbjct: 370 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVG 429
Query: 456 SEASYRMLQRYLVQA 470
+ +Y L QA
Sbjct: 430 NTVTYTTLIHGFFQA 444
Score = 125 bits (314), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/389 (22%), Positives = 185/389 (47%), Gaps = 10/389 (2%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSH--VQRTHPSLLTLKSMSIMLSRISKFQSYE 156
+ P F +H L R +A L+ V+ P L+T I+++ + K +
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTY---GIVVNGLCKRGDID 238
Query: 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTM 215
L +ME+ G + G +N ++ A C K + +A ++F ++ ++ PN T
Sbjct: 239 LALSLLKKMEQ----GKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 294
Query: 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275
N L+ G + +M+ R P+VVT++ ID + K+G +A +L++EM +
Sbjct: 295 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK 354
Query: 276 VACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA 335
+ P + T ++LI+G + + +A+ +F+ M ++ P++ YN +I + + ++
Sbjct: 355 RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDE 414
Query: 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMK 395
MEL EM ++ + + VTY T+ G ++ + ++ +M+ +P T +L+
Sbjct: 415 GMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLD 474
Query: 396 FFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQV 455
C N +V+ L ++ YL P + ++++ G+C G+ E+ ++ + ++ +
Sbjct: 475 GLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 534
Query: 456 SEASYRMLQRYLVQANANEKLEDLDRMIK 484
+ +Y + + E+ + L R +K
Sbjct: 535 NVVTYTTMMSGFCRKGLKEEADALFREMK 563
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 129/297 (43%), Gaps = 21/297 (7%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEET 158
F+ DAF K ++ + +D+ + + P + T S+ I+ F ++
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMIK-----RSIDPDIFTYSSL------INGFCMHDRL 377
Query: 159 LEA---FDRM-EREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNK 213
EA F+ M ++ F + +N L++ FC K + E +F ++ R N
Sbjct: 378 DEAKHMFELMISKDCFPNV-----VTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV 432
Query: 214 TMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273
T L+ GF ++ + ++ + +MV G P ++TY+I +DG C G A+ +FE +
Sbjct: 433 TYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYL 492
Query: 274 ERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDL 333
+R P + T +I G + LF + + +KP++ Y M+S R
Sbjct: 493 QRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLK 552
Query: 334 NAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTV 390
A L EM+E+ D+ TY+T+ ++ +L M +FV T+
Sbjct: 553 EEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI 609
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 78/172 (45%)
Query: 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHT 357
+ A LF +M K P I ++ ++S++ + + + L ++M+ I H+ TY
Sbjct: 62 LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121
Query: 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRG 417
+ + S L + +M++ + P T+ L+ FC R+ ++L G +++ G
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181
Query: 418 FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQ 469
+ P + L+ GL R EA +M+V+ Q +Y ++ L +
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCK 233
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 160/332 (48%), Gaps = 10/332 (3%)
Query: 120 DQAWELMSHVQ--RTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFG 177
D A+ L++ ++ + P +L ++ + + K++ ++ L F ME + GIR
Sbjct: 238 DLAFNLLNKMEQGKLEPGVLIYNTI---IDGLCKYKHMDDALNLFKEMETK---GIRP-N 290
Query: 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYH 236
++ L+ C +A + ++ R P+ T + L+ F + G + E Y
Sbjct: 291 VVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD 350
Query: 237 EMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVR 296
EMV R PS+VTY+ I+G+C +A ++FE M C P + T TLI G +
Sbjct: 351 EMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYK 410
Query: 297 NIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYH 356
+ + ++F EM +R L + YN +I L + D + A E+ EM + + +TY+
Sbjct: 411 RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYN 470
Query: 357 TMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR 416
T+ GL K+ LE +++ + K P T ++++ C +V+ G +L+ L +
Sbjct: 471 TLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK 530
Query: 417 GFCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448
G P A + +++G C +G EEA K+M
Sbjct: 531 GVKPDVVAYNTMISGFCRKGSKEEADALFKEM 562
Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 167/376 (44%), Gaps = 16/376 (4%)
Query: 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTH-PSLLTLKSMSIMLSRISKFQSYEETL 159
P+ F K L +A+M FD L +Q P + SI+++ + L
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPH--NHYTYSILINCFCRRSQLPLAL 136
Query: 160 EAFDRMEREIFVGIRKFGSE----EFNVLLQAFCTQKEMKEARSVFVKL-LSRFAPNNKT 214
+M K G E + LL +C K + EA ++ ++ ++ + PN T
Sbjct: 137 AVLGKM--------MKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVT 188
Query: 215 MNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEME 274
N L+ G + MV +G +P +VTY + ++G CK+G A L +ME
Sbjct: 189 FNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKME 248
Query: 275 RVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLN 334
+ P + T+I G +++ A LF EM + ++P++ Y+++IS L +
Sbjct: 249 QGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWS 308
Query: 335 AAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLM 394
A L+ +M E++I D T+ + +K L KLYD M++ P T L+
Sbjct: 309 DASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLI 368
Query: 395 KFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQ 454
FC++ R+D ++ +++ + P + L+ G C R EE E ++M R
Sbjct: 369 NGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLV 428
Query: 455 VSEASYRMLQRYLVQA 470
+ +Y +L + L QA
Sbjct: 429 GNTVTYNILIQGLFQA 444
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 133/295 (45%), Gaps = 17/295 (5%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT-HPSLLTLKSMSIMLSRISKFQSYEE 157
F+ DAF K ++ + +D+ V+R+ PS++T S+ ++ +E
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEM------VKRSIDPSIVTYSSL---INGFCMHDRLDE 379
Query: 158 TLEAFDRM-EREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTM 215
+ F+ M + F + + N L++ FC K ++E VF ++ R N T
Sbjct: 380 AKQMFEFMVSKHCFPDVVTY-----NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY 434
Query: 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275
NIL+ G ++GD + + EMV G P+++TYN +DG CK G AM +FE ++R
Sbjct: 435 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 494
Query: 276 VACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA 335
P++ T +I G + LF + + +KPD+ AYN MIS R
Sbjct: 495 SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEE 554
Query: 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTV 390
A L EM+E ++ Y+T+ ++ E +L M F T+
Sbjct: 555 ADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI 609
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 117/287 (40%), Gaps = 36/287 (12%)
Query: 234 FYHEMVLRGFRPSVVTY-----------------------------------NIRIDGYC 258
+ EMV PS++ + +I I+ +C
Sbjct: 68 LFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFC 127
Query: 259 KKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIG 318
++ A+ + +M ++ P++ T+++L++G + I +A L D+M +P+
Sbjct: 128 RRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTV 187
Query: 319 AYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRM 378
+N +I L + AM L+D M K D VTY + GL K + L ++M
Sbjct: 188 TFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM 247
Query: 379 IEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRW 438
+GK P ++ C +D LNL+ + +G P+ L++ LC+ GRW
Sbjct: 248 EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW 307
Query: 439 EEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDL-DRMIK 484
+A M+ R+ ++ L V+ + E L D M+K
Sbjct: 308 SDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 76/172 (44%)
Query: 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHT 357
+ A LF EM K P I ++ ++S++ + + + L ++M+ I H++ TY
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121
Query: 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRG 417
+ + S L + +M++ + P T+ L+ +C + R+ + L + G
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181
Query: 418 FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQ 469
+ P+ + L+ GL + EA +M+ + Q +Y ++ L +
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCK 233
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%)
Query: 265 DAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMI 324
DA+ LF EM + PS+ + L+ + L ++M + + Y+ +I
Sbjct: 64 DAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILI 123
Query: 325 SSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFV 384
+ R L A+ ++ +M + + VT ++ G S + L D+M +
Sbjct: 124 NCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQ 183
Query: 385 PKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFEC 444
P T T L+ ++ + + L ++ +G P ++V GLC RG + AF
Sbjct: 184 PNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNL 243
Query: 445 SKQM 448
+M
Sbjct: 244 LNKM 247
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 167/375 (44%), Gaps = 14/375 (3%)
Query: 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLE 160
P+ F K L +A+M FD L +Q S L S +I+++ + L
Sbjct: 78 PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISY-DLYSYNILINCFCRRSQLPLALA 136
Query: 161 AFDRMEREIFVGIRKFGSE----EFNVLLQAFCTQKEMKEARSVFVKL-LSRFAPNNKTM 215
+M K G E + LL +C K + EA ++ ++ + + PN T
Sbjct: 137 VLGKM--------MKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTF 188
Query: 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275
N L+ G + MV RG +P + TY ++G CK+G A+ L ++ME+
Sbjct: 189 NTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK 248
Query: 276 VACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA 335
+ TT+I +N++ A LF EM + ++P++ YN++I L +
Sbjct: 249 GKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSD 308
Query: 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMK 395
A L+ +M E++I + VT+ + +K L KLYD MI+ P T L+
Sbjct: 309 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 368
Query: 396 FFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQV 455
FC++ R+D +++ +I + P+ + L+ G C R EE E ++M R
Sbjct: 369 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 428
Query: 456 SEASYRMLQRYLVQA 470
+ +Y L + L QA
Sbjct: 429 NTVTYNTLIQGLFQA 443
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 140/300 (46%), Gaps = 5/300 (1%)
Query: 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFV 202
+ ++ + +++ + L F M+ + GIR +N L++ C +A +
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNK---GIRP-NVVTYNSLIRCLCNYGRWSDASRLLS 314
Query: 203 KLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261
++ R PN T + L+ F + G + E Y EM+ R P + TY+ I+G+C
Sbjct: 315 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 374
Query: 262 CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYN 321
+A +FE M C P++ T TLI G + + + +LF EM +R L + YN
Sbjct: 375 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYN 434
Query: 322 AMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381
+I L + D + A ++ +M + D +TY + GL K LE +++ + +
Sbjct: 435 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 494
Query: 382 KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
K P T ++++ C +V+ G +L+ L +G P+ +++G C +G EEA
Sbjct: 495 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEA 554
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 1/218 (0%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
+N L++ FC K ++E +F ++ R N T N L+ G ++GD + + +MV
Sbjct: 398 YNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMV 457
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
G P ++TY+I +DG CK G A+ +FE +++ P + T +I G +
Sbjct: 458 SDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVE 517
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF 359
LF + + +KP++ Y MIS R A L EM+E ++ TY+T+
Sbjct: 518 DGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLI 577
Query: 360 FGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFF 397
++ +L M FV T+ M++
Sbjct: 578 RARLRDGDKAASAELIKEMRSCGFVGDASTISMVINML 615
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 18/163 (11%)
Query: 134 PSLLTLKSMSIMLSRISKFQSYEETLEAFD-----RMEREIFVGIRKFGSEEFNVLLQAF 188
P ++T SI+L + K+ E+ L F+ +ME +I+ +N++++
Sbjct: 463 PDIITY---SILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYT---------YNIMIEGM 510
Query: 189 CTQKEMKEARSVFVKL-LSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSV 247
C ++++ +F L L PN ++ GF G + + EM G P+
Sbjct: 511 CKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNS 570
Query: 248 VTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIH 290
TYN I + G + L +EM + TI+ +I+
Sbjct: 571 GTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 613
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 145/300 (48%), Gaps = 5/300 (1%)
Query: 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFV 202
SI++ + K S+++ L F+ ME + GI K ++ L+ C + + +
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMK---GI-KADVVTYSSLIGGLCNDGKWDDGAKMLR 304
Query: 203 KLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261
+++ R P+ T + L+ F + G + + Y+EM+ RG P +TYN IDG+CK+
Sbjct: 305 EMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364
Query: 262 CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYN 321
C +A ++F+ M C P + T + LI+ + + +LF E+ + L P+ YN
Sbjct: 365 CLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYN 424
Query: 322 AMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381
++ + LNAA EL EM + + VTY + GL + L +++++M +
Sbjct: 425 TLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKS 484
Query: 382 KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
+ +++ C +VD +L+ L D+G P ++++ GLC +G EA
Sbjct: 485 RMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA 544
Score = 118 bits (296), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 110/215 (51%), Gaps = 1/215 (0%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
+++L+ ++C K + + +F ++ S+ PN T N L+LGF +SG + A + + EMV
Sbjct: 388 YSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMV 447
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
RG PSVVTY I +DG C G A+ +FE+M++ + +IHG +
Sbjct: 448 SRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVD 507
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF 359
A LF + + +KPD+ YN MI L + L+ A L +M+E D+ TY+ +
Sbjct: 508 DAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567
Query: 360 FGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLM 394
+ SGL +L + M F + T+ M++
Sbjct: 568 RAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVI 602
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 135/307 (43%), Gaps = 4/307 (1%)
Query: 183 VLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241
+++ +C +K++ A SV + + P+ T + L+ GF G V+ MV
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169
Query: 242 GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQA 301
RP +VT + I+G C KG +A+ L + M P T +++ N A
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229
Query: 302 RQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFG 361
LF +M +RN+K + Y+ +I SL + + A+ L +EME K I D VTY ++ G
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 289
Query: 362 LMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPH 421
L + K+ MI +P T L+ F ++ L+ +I RG P
Sbjct: 290 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD 349
Query: 422 GHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDR 481
+ L+ G C EA + M+ + + +Y +L +A ++++D R
Sbjct: 350 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKA---KRVDDGMR 406
Query: 482 MIKNLQA 488
+ + + +
Sbjct: 407 LFREISS 413
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 76/199 (38%)
Query: 265 DAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMI 324
DA+ LFE M + LP+ L + M ++ D+ MI
Sbjct: 53 DAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMI 112
Query: 325 SSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFV 384
+ R + L A ++ + D +T+ T+ G + L DRM+E K
Sbjct: 113 NCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR 172
Query: 385 PKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFEC 444
P TV L+ C+ RV L L +++ GF P ++ LC G A +
Sbjct: 173 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 232
Query: 445 SKQMLVRRRQVSEASYRML 463
++M R + S Y ++
Sbjct: 233 FRKMEERNIKASVVQYSIV 251
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/440 (24%), Positives = 189/440 (42%), Gaps = 30/440 (6%)
Query: 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAW 123
L S V+NVL ++ + L +LEFF + + + + LH L + R F A
Sbjct: 79 LDSFRVKNVLLKI---QKDYLLSLEFFNWAKTRNPGSHSLETHAIVLHTLTKNRKFKSAE 135
Query: 124 ELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFD------------RMEREIFV 171
++ V L K +L ++ + T FD R + F+
Sbjct: 136 SILRDVLVNGGVDLPAKVFDALLY---SYRECDSTPRVFDSLFKTFAHLKKFRNATDTFM 192
Query: 172 GIRKFG----SEEFNVLLQAFCTQKEMKEARSVFVKLL-SRFAPNNKTMNILLLGFKESG 226
++ +G E N + + Q + A + ++ + +PN T+N+++ G+ SG
Sbjct: 193 QMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSG 252
Query: 227 DVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTIT 286
+ +M GFR + V+YN I G+C+KG A++L M + P++ T
Sbjct: 253 KLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFN 312
Query: 287 TLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346
TLIHG + +A ++F EM N+ P+ YN +I+ + D A ++M
Sbjct: 313 TLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCN 372
Query: 347 RIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLG 406
I D +TY+ + FGL K + + + + VP + T L+ CV D G
Sbjct: 373 GIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRG 432
Query: 407 LNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRY 466
L+ +I G P+ ++LV+ C E F+ + Q+L R++ S + R
Sbjct: 433 FELYKSMIRSGCHPNEQTFNMLVSAFCR----NEDFDGASQVL---REMVRRSIPLDSRT 485
Query: 467 LVQANANEKLEDLDRMIKNL 486
+ Q K + D+++K L
Sbjct: 486 VHQVCNGLKHQGKDQLVKKL 505
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 105/208 (50%), Gaps = 1/208 (0%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
FN L+ FC +++EA VF ++ + APN T N L+ G+ + GD FY +MV
Sbjct: 311 FNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMV 370
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
G + ++TYN I G CK+ A + +E+++ +P+ T + LI G + +N
Sbjct: 371 CNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNAD 430
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF 359
+ +L+ M + P+ +N ++S+ R D + A +++ EM + I D+ T H +
Sbjct: 431 RGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRTVHQVC 490
Query: 360 FGLMKSSGLEGVCKLYDRMIEGKFVPKT 387
GL + V KL M KF+ ++
Sbjct: 491 NGLKHQGKDQLVKKLLQEMEGKKFLQES 518
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 118/475 (24%), Positives = 196/475 (41%), Gaps = 63/475 (13%)
Query: 57 HLPQTTPLSSTLVENVLGRLFAAHSNGL-------------------KALEFFK-FTLQH 96
L +T L + L + GR+F++ S+G A++ F+ T
Sbjct: 8 RLLETGTLRTALFLSCYGRVFSSVSDGKGKVSYRERLRSGIVDIKEDDAVDLFQEMTRSR 67
Query: 97 PHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYE 156
P P F + ++AR + +D +L ++ + L ++SIM++ + +
Sbjct: 68 PR--PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAH-NLYTLSIMINCCCRCRKLS 124
Query: 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTM 215
AF M + I +G + F+ L+ C + + EA + +++ P T+
Sbjct: 125 L---AFSAMGKIIKLGYEP-DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITL 180
Query: 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY------------------------- 250
N L+ G +G V+ + MV GF+P+ VTY
Sbjct: 181 NALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEE 240
Query: 251 ----------NIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQ 300
+I IDG CK G +A LF EME + TTLI G
Sbjct: 241 RKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDD 300
Query: 301 ARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFF 360
+L +M KR + PD+ A++A+I ++ L A EL EM ++ I D VTY ++
Sbjct: 301 GAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLID 360
Query: 361 GLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420
G K + L+ + D M+ P RT +L+ +C +D GL L+ + RG
Sbjct: 361 GFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVA 420
Query: 421 HGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEK 475
+ L+ G C G+ E A E ++M+ RR + SY++L L EK
Sbjct: 421 DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEK 475
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 149/346 (43%), Gaps = 10/346 (2%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEET 158
F P + L ++ + A EL+ ++ L +K SI++ + K S +
Sbjct: 208 FQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK-YSIIIDGLCKDGSLDNA 266
Query: 159 LEAFDRMEREIFVGIRKFGSEE--FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTM 215
F+ ME I+ F ++ + L++ FC + + ++ R P+
Sbjct: 267 FNLFNEME------IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAF 320
Query: 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275
+ L+ F + G + E + EM+ RG P VTY IDG+CK+ A + + M
Sbjct: 321 SALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVS 380
Query: 276 VACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA 335
C P+++T LI+G I +LF +M R + D YN +I L
Sbjct: 381 KGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEV 440
Query: 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMK 395
A EL EM +R+ D V+Y + GL + E ++++++ + K +++
Sbjct: 441 AKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIH 500
Query: 396 FFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
C +VD +L+ L +G P ++++ GLC +G EA
Sbjct: 501 GMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEA 546
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 1/218 (0%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKL-LSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
FN+L+ +C + + +F K+ L + T N L+ GF E G + + + EMV
Sbjct: 390 FNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMV 449
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
R RP +V+Y I +DG C G A+ +FE++E+ + +IHG +
Sbjct: 450 SRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVD 509
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF 359
A LF +P + +KPD+ YN MI L + L+ A L +MEE + TY+ +
Sbjct: 510 DAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILI 569
Query: 360 FGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFF 397
+ KL + + F TV M++
Sbjct: 570 RAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDML 607
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/426 (24%), Positives = 177/426 (41%), Gaps = 36/426 (8%)
Query: 59 PQTTPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQ-HPHFTPTPDAFEKTLHILARMR 117
P P L L + N AL+ F + + HP FT D + L L+R R
Sbjct: 38 PPIKPWPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRAR 97
Query: 118 YFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQS-YEETLEAFDRMER--------- 167
FD LM+ ++ ++P + +++ I L R YE ++ F R+
Sbjct: 98 AFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRS 157
Query: 168 --------------EIFVGIRKFGSEEF---------NVLLQAFCTQKEMKEARSVFVKL 204
++ + K E F N+L++A C + +++ A V ++
Sbjct: 158 LNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEI 217
Query: 205 LSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263
S PN T +L G+ GD+ + + EM+ RG+ P TY + +DGYCK G F
Sbjct: 218 PSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRF 277
Query: 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323
+A + ++ME+ P+ T +I + +AR +FDEM +R+ PD +
Sbjct: 278 SEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKV 337
Query: 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383
I +L ++ A L +M + DN T+ L K + KL+D +G
Sbjct: 338 IDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGS- 396
Query: 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE 443
+P T L+ C + LW + +R P+ ++L+ GL G +E
Sbjct: 397 IPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVR 456
Query: 444 CSKQML 449
++ML
Sbjct: 457 VLEEML 462
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 119/258 (46%), Gaps = 8/258 (3%)
Query: 141 SMSIMLSRISKFQSYEETLEAFDRMER-EIFVGIRKFGSEEFNVLLQAFCTQKEMKEARS 199
+ ++++ K + E D ME+ EI +G V+++A C +K+ EAR+
Sbjct: 263 TYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYG-----VMIRALCKEKKSGEARN 317
Query: 200 VFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258
+F ++L R F P++ ++ E V + +M+ P + I C
Sbjct: 318 MFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLC 377
Query: 259 KKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIG 318
K+G +A +LF+E E+ +PSL T TLI G + +A +L+D+M +R KP+
Sbjct: 378 KEGRVTEARKLFDEFEK-GSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAF 436
Query: 319 AYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRM 378
YN +I L + ++ + +++EM E + T+ +F GL K E K+
Sbjct: 437 TYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMA 496
Query: 379 IEGKFVPKTRTVVMLMKF 396
+ V K + L KF
Sbjct: 497 VMNGKVDKESWELFLKKF 514
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 79/184 (42%), Gaps = 3/184 (1%)
Query: 288 LIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCR--DLNAAMELMDEMEE 345
L+ GL + ++F +P +K + + N +++ LI+ + DL AM + E
Sbjct: 126 LLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAM-FKNSKES 184
Query: 346 KRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDL 405
I + T + + L K + +E K+ D + VP T ++ + ++
Sbjct: 185 FGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMES 244
Query: 406 GLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQR 465
+ ++DRG+ P +L+ G C GR+ EA M + +E +Y ++ R
Sbjct: 245 AKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIR 304
Query: 466 YLVQ 469
L +
Sbjct: 305 ALCK 308
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 152/341 (44%), Gaps = 16/341 (4%)
Query: 103 PDAFEKTLHIL-----ARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEE 157
P+ + T++IL +M ++ +ELM + H L L + S M+ K + +
Sbjct: 232 PNVYIYTIYILDLCRDNKMEEAEKMFELM----KKHGVLPNLYTYSAMIDGYCKTGNVRQ 287
Query: 158 TLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFA--PNNKTM 215
+ +EI V F L+ FC +E+ ARS+FV ++ +F PN
Sbjct: 288 AYGLY----KEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMV-KFGVDPNLYVY 342
Query: 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275
N L+ G +SG++ EM P V TY I I+G C + +A RLF++M+
Sbjct: 343 NCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKN 402
Query: 276 VACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA 335
PS T +LIHG N+ QA L EM ++P+I ++ +I RD+ A
Sbjct: 403 ERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKA 462
Query: 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMK 395
AM L EM K I D VTY + K + ++ +LY M+E P T L+
Sbjct: 463 AMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVD 522
Query: 396 FFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRG 436
F R+ + ++ + + C + L+ GLC G
Sbjct: 523 GFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNG 563
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 122/265 (46%), Gaps = 3/265 (1%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLL-SRFAPNNKTMNILLLGFKESGD-VTAMEMFYHEM 238
++ ++ +C +++A ++ ++L + PN L+ GF ++ + VTA +F H M
Sbjct: 272 YSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVH-M 330
Query: 239 VLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNI 298
V G P++ YN I G+CK G +A+ L EME + P + T T LI+G + +
Sbjct: 331 VKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQV 390
Query: 299 HQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTM 358
+A +LF +M + P YN++I + ++ A++L EM + + +T+ T+
Sbjct: 391 AEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTL 450
Query: 359 FFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418
G ++ LY M VP T L+ + L L+ +++ G
Sbjct: 451 IDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGI 510
Query: 419 CPHGHALDLLVTGLCSRGRWEEAFE 443
P+ H LV G GR A +
Sbjct: 511 HPNDHTFACLVDGFWKEGRLSVAID 535
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 115/271 (42%), Gaps = 3/271 (1%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFA--PNNKTMNILLLGFKESGDVTAMEMFYHEM 238
+ + + C +M+EA +F +L+ + PN T + ++ G+ ++G+V Y E+
Sbjct: 237 YTIYILDLCRDNKMEEAEKMF-ELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEI 295
Query: 239 VLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNI 298
++ P+VV + +DG+CK A LF M + P+L LIHG N+
Sbjct: 296 LVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNM 355
Query: 299 HQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTM 358
+A L EM NL PD+ Y +I+ L + A L +M+ +RI + TY+++
Sbjct: 356 LEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSL 415
Query: 359 FFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418
G K +E L M P T L+ +C + + L+ + +G
Sbjct: 416 IHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGI 475
Query: 419 CPHGHALDLLVTGLCSRGRWEEAFECSKQML 449
P L+ +EA ML
Sbjct: 476 VPDVVTYTALIDAHFKEANMKEALRLYSDML 506
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 116/256 (45%), Gaps = 6/256 (2%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
+ +L+ C + ++ EA +F K+ + R P++ T N L+ G+ + ++ EM
Sbjct: 377 YTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMT 436
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
G P+++T++ IDGYC AM L+ EM +P + T T LI N+
Sbjct: 437 ASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMK 496
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF 359
+A +L+ +M + + P+ + ++ + L+ A++ E ++R ++V + +
Sbjct: 497 EALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLI 556
Query: 360 FGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFC 419
GL ++ + + + M P + V ++K R+ + L +I G
Sbjct: 557 EGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGIL 616
Query: 420 PHGHALDLLVTGLCSR 435
P +LLV L +R
Sbjct: 617 P-----NLLVNQLLAR 627
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 118/299 (39%), Gaps = 37/299 (12%)
Query: 222 FKESGDVTAMEMFYHEMVLRGFRPSV---------------------------------- 247
FK+ G + E EM G +P+V
Sbjct: 210 FKQ-GLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPN 268
Query: 248 -VTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFD 306
TY+ IDGYCK G A L++E+ LP++ TL+ G R + AR LF
Sbjct: 269 LYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFV 328
Query: 307 EMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSS 366
M K + P++ YN +I + ++ A+ L+ EME + D TY + GL
Sbjct: 329 HMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIED 388
Query: 367 GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALD 426
+ +L+ +M + P + T L+ +C + ++ L+L + G P+
Sbjct: 389 QVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFS 448
Query: 427 LLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYR-MLQRYLVQANANEKLEDLDRMIK 484
L+ G C+ + A +M ++ +Y ++ + +AN E L M++
Sbjct: 449 TLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLE 507
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 126/309 (40%), Gaps = 3/309 (0%)
Query: 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMF 234
KF F++L+ F +EA ++V + +P++K +L G ++ +
Sbjct: 129 KFSIGVFSLLIMEFLEMGLFEEA--LWVSREMKCSPDSKACLSILNGLVRRRRFDSVWVD 186
Query: 235 YHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGL 294
Y M+ RG P V Y + K+G + +L +EM + P++ T I
Sbjct: 187 YQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCR 246
Query: 295 VRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVT 354
+ +A ++F+ M K + P++ Y+AMI + ++ A L E+ + + V
Sbjct: 247 DNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVV 306
Query: 355 YHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLI 414
+ T+ G K+ L L+ M++ P L+ C + + + L +
Sbjct: 307 FGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEME 366
Query: 415 DRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYR-MLQRYLVQANAN 473
P +L+ GLC + EA ++M R S A+Y ++ Y + N
Sbjct: 367 SLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNME 426
Query: 474 EKLEDLDRM 482
+ L+ M
Sbjct: 427 QALDLCSEM 435
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 167/362 (46%), Gaps = 6/362 (1%)
Query: 115 RMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIR 174
R D + +L H+ + P L ++ S +LS ISK + Y+ + +++M+ +GI
Sbjct: 58 RFMKLDDSLDLFFHMVQCRP-LPSIADFSRLLSAISKMKKYDVVIYLWEQMQ---MLGI- 112
Query: 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEM 233
N+LL FC ++ A S K++ P+ T LL GF V
Sbjct: 113 PHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALY 172
Query: 234 FYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAG 293
+ +MV G++P+VV YN IDG CK +A+ L ME+ P + T +LI G
Sbjct: 173 MFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLC 232
Query: 294 LVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNV 353
A ++ M KR + PD+ +NA+I + ++ ++ A E +EM + + D V
Sbjct: 233 SSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIV 292
Query: 354 TYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYL 413
TY + +GL S L+ +++ M+ P T +L+ +C + +V+ G+ L+ +
Sbjct: 293 TYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM 352
Query: 414 IDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANAN 473
RG + +L+ G C G+ A E ++M+ + +Y +L L
Sbjct: 353 SQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKI 412
Query: 474 EK 475
EK
Sbjct: 413 EK 414
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 102/411 (24%), Positives = 173/411 (42%), Gaps = 23/411 (5%)
Query: 89 FFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQA---WELMSHVQRTHPSLLTLKSMSIM 145
FF P P+ F + L +++M+ +D WE M + H L + +I+
Sbjct: 69 FFHMVQCRP--LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPH----NLCTCNIL 122
Query: 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE----EFNVLLQAFCTQKEMKEARSVF 201
L+ + L +M K G E F LL FC + +A +F
Sbjct: 123 LNCFCRCSQLSLALSFLGKM--------IKLGHEPSIVTFGSLLNGFCRGDRVYDALYMF 174
Query: 202 VKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK 260
+++ + PN N ++ G +S V + M G P VVTYN I G C
Sbjct: 175 DQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSS 234
Query: 261 GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAY 320
G + DA R+ M + P + T LI + +A + ++EM +R+L PDI Y
Sbjct: 235 GRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTY 294
Query: 321 NAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380
+ +I L L+ A E+ M K D VTY + G KS +E KL+ M +
Sbjct: 295 SLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQ 354
Query: 381 GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEE 440
V T T +L++ +C ++++ ++ ++ G P+ ++L+ GLC G+ E+
Sbjct: 355 RGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEK 414
Query: 441 AFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLP 491
A M +Y ++ R + +A D+ + N Q ++P
Sbjct: 415 ALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSL-NCQGLMP 464
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 130/321 (40%), Gaps = 35/321 (10%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHVQR--THPSLLTLKSMSIMLSRISKFQSYE 156
+ P + + L + + D A +L++ +++ P ++T S+ L ++
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241
Query: 157 ETLEAFDRMEREIFVGIRKFGS--------------EEF----------------NVLLQ 186
+ + REI+ + F + EEF ++L+
Sbjct: 242 RMVSCMTK--REIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIY 299
Query: 187 AFCTQKEMKEARSVFVKLLSRFA-PNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRP 245
C + EA +F ++S+ P+ T +IL+ G+ +S V + EM RG
Sbjct: 300 GLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVR 359
Query: 246 SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLF 305
+ VTY I I GYC+ G A +F M P++ T L+HG I +A +
Sbjct: 360 NTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVIL 419
Query: 306 DEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKS 365
+M K + DI YN +I + + ++ A ++ + + + D TY TM GL K
Sbjct: 420 ADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKK 479
Query: 366 SGLEGVCKLYDRMIEGKFVPK 386
L+ +M E +P
Sbjct: 480 GLRREADALFRKMKEDGILPN 500
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 143/301 (47%), Gaps = 5/301 (1%)
Query: 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFV 202
S ++ + K++ ++ L F M+ + GIR ++ L+ C +A +
Sbjct: 244 STVIDSLCKYRHVDDALNLFTEMDNK---GIRP-DVFTYSSLISCLCNYGRWSDASRLLS 299
Query: 203 KLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261
+L R PN T N L+ F + G + E + EM+ R P++VTYN I+G+C
Sbjct: 300 DMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 359
Query: 262 CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYN 321
+A ++F M CLP + T TLI+G + + +LF +M +R L + Y
Sbjct: 360 RLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYT 419
Query: 322 AMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381
+I + D + A + +M + + +TY+T+ GL K+ LE +++ + +
Sbjct: 420 TLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKS 479
Query: 382 KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
K P T ++ + C +V+ G +L+ L +G P A + +++G C +G EEA
Sbjct: 480 KMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEA 539
Query: 442 F 442
+
Sbjct: 540 Y 540
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/393 (23%), Positives = 174/393 (44%), Gaps = 17/393 (4%)
Query: 85 KALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQA---WELMSHVQRTHPSLLTLKS 141
+A++ F ++ F P+ F K L +A+M+ FD E M + +H L +
Sbjct: 48 EAVDLFGEMVKSRPF-PSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSH----NLYT 102
Query: 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE--EFNVLLQAFCTQKEMKEARS 199
+IM++ + + L +M + +G N LL FC + EA +
Sbjct: 103 YNIMINCLCRRSQLSFALAILGKMMK------LGYGPSIVTLNSLLNGFCHGNRISEAVA 156
Query: 200 VFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258
+ +++ + P+ T L+ G + + MV++G +P +VTY I+G C
Sbjct: 157 LVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLC 216
Query: 259 KKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIG 318
K+G A+ L +ME+ + +T+I R++ A LF EM + ++PD+
Sbjct: 217 KRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVF 276
Query: 319 AYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRM 378
Y+++IS L + A L+ +M E++I + VT++++ K L KL+D M
Sbjct: 277 TYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEM 336
Query: 379 IEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRW 438
I+ P T L+ FC++ R+D ++ ++ + P + L+ G C +
Sbjct: 337 IQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKV 396
Query: 439 EEAFECSKQMLVRRRQVSEASYRMLQRYLVQAN 471
+ E + M R + +Y L QA+
Sbjct: 397 VDGMELFRDMSRRGLVGNTVTYTTLIHGFFQAS 429
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/352 (21%), Positives = 168/352 (47%), Gaps = 12/352 (3%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSH--VQRTHPSLLTLKSMSIMLSRISKFQSYE 156
+ P F +H L + +A L+ V+ P L+T ++ ++ + K +
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAV---INGLCKRGEPD 222
Query: 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTM 215
L ++ME+ G + ++ ++ + C + + +A ++F ++ ++ P+ T
Sbjct: 223 LALNLLNKMEK----GKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTY 278
Query: 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275
+ L+ G + +M+ R P+VVT+N ID + K+G +A +LF+EM +
Sbjct: 279 SSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQ 338
Query: 276 VACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA 335
+ P++ T +LI+G + + +A+Q+F M ++ PD+ YN +I+ + + +
Sbjct: 339 RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVD 398
Query: 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMK 395
MEL +M + + + VTY T+ G ++S + ++ +M+ P T L+
Sbjct: 399 GMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLD 458
Query: 396 FFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE--CS 445
C N +++ + ++ YL P + +++ G+C G+ E+ ++ CS
Sbjct: 459 GLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCS 510
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 135/328 (41%), Gaps = 45/328 (13%)
Query: 106 FEKTLHILARMRYFDQAWELMSHVQR--THPSLLTLKSMSIMLSRISKFQSYEETLEAFD 163
+ + L + R+ D A L + + P + T S+ L ++ L D
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLS--D 300
Query: 164 RMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGF 222
+ER+I + F N L+ AF + ++ EA +F +++ R PN T N L+ GF
Sbjct: 301 MLERKINPNVVTF-----NSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGF 355
Query: 223 KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL 282
+ + + MV + P VVTYN I+G+CK D M LF +M R + +
Sbjct: 356 CMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNT 415
Query: 283 QTITTLIHG---------------------------------AGLVRN--IHQARQLFDE 307
T TTLIHG GL +N + +A +F+
Sbjct: 416 VTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEY 475
Query: 308 MPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG 367
+ K ++PDI YN M + + + +L + K + D + Y+TM G K
Sbjct: 476 LQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGL 535
Query: 368 LEGVCKLYDRMIEGKFVPKTRTVVMLMK 395
E L+ +M E +P + T L++
Sbjct: 536 KEEAYTLFIKMKEDGPLPDSGTYNTLIR 563
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 126/296 (42%), Gaps = 21/296 (7%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT-HPSLLTLKSMS---IMLSRISKFQS 154
F DAF K ++ + FD+ +QR+ P+++T S+ M R+ + Q
Sbjct: 313 FNSLIDAFAKEGKLIEAEKLFDEM------IQRSIDPNIVTYNSLINGFCMHDRLDEAQQ 366
Query: 155 YEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNK 213
+ + D + + +N L+ FC K++ + +F + R N
Sbjct: 367 IFTLMVSKDCLPDVV----------TYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTV 416
Query: 214 TMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273
T L+ GF ++ D +M + +MV G P+++TYN +DG CK G AM +FE +
Sbjct: 417 TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476
Query: 274 ERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDL 333
++ P + T + G + LF + + +KPD+ AYN MIS +
Sbjct: 477 QKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLK 536
Query: 334 NAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRT 389
A L +M+E D+ TY+T+ ++ +L M +F T
Sbjct: 537 EEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDAST 592
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 111/246 (45%)
Query: 234 FYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAG 293
+ EM +G RP V TY+ I C G + DA RL +M P++ T +LI
Sbjct: 262 LFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFA 321
Query: 294 LVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNV 353
+ +A +LFDEM +R++ P+I YN++I+ L+ A ++ M K D V
Sbjct: 322 KEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVV 381
Query: 354 TYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYL 413
TY+T+ G K+ + +L+ M V T T L+ F D ++ +
Sbjct: 382 TYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQM 441
Query: 414 IDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANAN 473
+ G P+ + L+ GLC G+ E+A + + + + +Y ++ + +A
Sbjct: 442 VSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKV 501
Query: 474 EKLEDL 479
E DL
Sbjct: 502 EDGWDL 507
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 75/163 (46%)
Query: 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHT 357
+ +A LF EM K P I ++ ++S++ + + + + ++ME + H+ TY+
Sbjct: 46 LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105
Query: 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRG 417
M L + S L + +M++ + P T+ L+ FC R+ + L +++ G
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165
Query: 418 FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASY 460
+ P LV GL + EA ++M+V+ Q +Y
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 208
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 12/217 (5%)
Query: 240 LRGFRPSVVTYNIRIDGYCKKGC--------FGDAMRLFEEMERVACLPSLQTITTLIHG 291
LRG S ++Y DGY +K +A+ LF EM + PS+ + L+
Sbjct: 19 LRGIYFSGLSY----DGYREKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSA 74
Query: 292 AGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHD 351
++ ++M + ++ YN MI+ L R L+ A+ ++ +M + G
Sbjct: 75 IAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPS 134
Query: 352 NVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWG 411
VT +++ G + + L D+M+E + P T T L+ + + + L
Sbjct: 135 IVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVE 194
Query: 412 YLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448
++ +G P ++ GLC RG + A +M
Sbjct: 195 RMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKM 231
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 122 bits (305), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/409 (22%), Positives = 179/409 (43%), Gaps = 17/409 (4%)
Query: 60 QTTPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYF 119
Q +P + N+L R F N AL F ++ P + + ++R
Sbjct: 200 QVSP--NVFTYNILIRGFCFAGNIDVALTLFD-KMETKGCLPNVVTYNTLIDGYCKLRKI 256
Query: 120 DQAWELMSH--VQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFG 177
D ++L+ ++ P+L++ + L R + + L +R R +
Sbjct: 257 DDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR---------RGYS 307
Query: 178 SEE--FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMF 234
+E +N L++ +C + +A + ++L P+ T L+ ++G++ F
Sbjct: 308 LDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEF 367
Query: 235 YHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGL 294
+M +RG P+ TY +DG+ +KG +A R+ EM PS+ T LI+G +
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCV 427
Query: 295 VRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVT 354
+ A + ++M ++ L PD+ +Y+ ++S R D++ A+ + EM EK I D +T
Sbjct: 428 TGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTIT 487
Query: 355 YHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLI 414
Y ++ G + + C LY+ M+ P T L+ +C+ ++ L L ++
Sbjct: 488 YSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMV 547
Query: 415 DRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRML 463
++G P +L+ GL + R EA ++ S+ +Y L
Sbjct: 548 EKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTL 596
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/397 (22%), Positives = 180/397 (45%), Gaps = 17/397 (4%)
Query: 102 TPDAFEKTLHILARMRYFDQAWELMSHVQRTH---PSLLTLKSMSIMLSRISKFQSYEET 158
T F+ + +R+ D+A ++ H+ + H P +L+ ++ R + S+ E
Sbjct: 133 TSSVFDLVVKSYSRLSLIDKALSIV-HLAQAHGFMPGVLSYNAVLDATIRSKRNISFAEN 191
Query: 159 LEAFDRM-EREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFA-PNNKTMN 216
+ F M E ++ + + N+L++ FC + A ++F K+ ++ PN T N
Sbjct: 192 V--FKEMLESQVSPNVFTY-----NILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYN 244
Query: 217 ILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV 276
L+ G+ + + M L+G P++++YN+ I+G C++G + + EM R
Sbjct: 245 TLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRR 304
Query: 277 ACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAA 336
T TLI G N HQA + EM + L P + Y ++I S+ + ++N A
Sbjct: 305 GYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRA 364
Query: 337 MELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKF 396
ME +D+M + + + TY T+ G + + ++ M + F P T L+
Sbjct: 365 MEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALING 424
Query: 397 FCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS 456
CV +++ + + + ++G P + +++G C +EA ++M+ + +
Sbjct: 425 HCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPD 484
Query: 457 EASY-RMLQRYLVQANANEKLEDLDRMIKNLQAVLPP 492
+Y ++Q + Q E + + M L+ LPP
Sbjct: 485 TITYSSLIQGFCEQRRTKEACDLYEEM---LRVGLPP 518
Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 178/412 (43%), Gaps = 35/412 (8%)
Query: 64 LSSTLVENVLGRLFAAHSNGL---KALEFFK---FTLQHPHFTPTPDAFEKTLHILARMR 117
L+ TL+ L ++ S+ L KAL F K + L H TP+A ++L + +
Sbjct: 3 LTKTLIRRSLSTFASSPSDSLLADKALTFLKRHPYQLHHLSANFTPEAAS---NLLLKSQ 59
Query: 118 YFDQAWELMSHVQRTHP-SLLTLKSMSIMLSRISKFQSYEET-LEAFDRMEREIFVGIRK 175
DQA ++ + +P TL+ I L ++KF+ Y+ + A D + + +
Sbjct: 60 N-DQAL-ILKFLNWANPHQFFTLRCKCITLHILTKFKLYKTAQILAEDVAAKTL---DDE 114
Query: 176 FGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLL----GF--------- 222
+ S F L + + + VK SR + +K ++I+ L GF
Sbjct: 115 YASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNA 174
Query: 223 ------KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV 276
+ +++ E + EM+ P+V TYNI I G+C G A+ LF++ME
Sbjct: 175 VLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETK 234
Query: 277 ACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAA 336
CLP++ T TLI G +R I +L M + L+P++ +YN +I+ L R +
Sbjct: 235 GCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEV 294
Query: 337 MELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKF 396
++ EM + D VTY+T+ G K ++ M+ P T L+
Sbjct: 295 SFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHS 354
Query: 397 FCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448
C ++ + + RG CP+ LV G +G EA+ ++M
Sbjct: 355 MCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM 406
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 150/334 (44%), Gaps = 27/334 (8%)
Query: 134 PSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEE--FNVLLQAFCTQ 191
PS++T S+ + + K + +E D+M +R E + L+ F +
Sbjct: 343 PSVITYTSL---IHSMCKAGNMNRAMEFLDQMR------VRGLCPNERTYTTLVDGFSQK 393
Query: 192 KEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY 250
M EA V ++ F+P+ T N L+ G +G + +M +G P VV+Y
Sbjct: 394 GYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSY 453
Query: 251 NIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPK 310
+ + G+C+ +A+R+ EM P T ++LI G R +A L++EM +
Sbjct: 454 STVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR 513
Query: 311 RNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEG 370
L PD Y A+I++ DL A++L +EM EK + D VTY + GL K S
Sbjct: 514 VGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTRE 573
Query: 371 VCKL---------------YDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLID 415
+L Y +IE + ++VV L+K FC+ + ++ ++
Sbjct: 574 AKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLG 633
Query: 416 RGFCPHGHALDLLVTGLCSRGRWEEAFECSKQML 449
+ P G A ++++ G C G +A+ K+M+
Sbjct: 634 KNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMV 667
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 85/221 (38%), Gaps = 55/221 (24%)
Query: 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSV 200
S S +LS + +E L R++RE+ K + ++ L+Q FC Q+ KEA +
Sbjct: 452 SYSTVLSGFCRSYDVDEAL----RVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDL 507
Query: 201 FVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDG--- 256
+ ++L P+ T L+ + GD+ ++EMV +G P VVTY++ I+G
Sbjct: 508 YEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNK 567
Query: 257 -----------------------------------------------YCKKGCFGDAMRL 269
+C KG +A ++
Sbjct: 568 QSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQV 627
Query: 270 FEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPK 310
FE M P +IHG +I +A L+ EM K
Sbjct: 628 FESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVK 668
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLL-SRFAPNN---------------KTMNILLLGFKE 224
++VL+ Q +EA+ + +KL P++ K++ L+ GF
Sbjct: 558 YSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCM 617
Query: 225 SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQT 284
G +T + + M+ + +P YNI I G+C+ G A L++EM + L L T
Sbjct: 618 KGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFL--LHT 675
Query: 285 ITTLIHGAGLVRNIHQ 300
+T + LV+ +H+
Sbjct: 676 VTVI----ALVKALHK 687
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 1/134 (0%)
Query: 184 LLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRG 242
L++ FC + M EA VF +L + P+ NI++ G +GD+ Y EMV G
Sbjct: 611 LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSG 670
Query: 243 FRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQAR 302
F VT + K+G + + + R L + L+ N+
Sbjct: 671 FLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVL 730
Query: 303 QLFDEMPKRNLKPD 316
+ EM K P+
Sbjct: 731 DVLAEMAKDGFLPN 744
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 122 bits (305), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 186/414 (44%), Gaps = 43/414 (10%)
Query: 82 NGLKALEFFKFTLQHPHFT-----PTPDAFEKTLHILARMRYFDQAWELMSHVQ------ 130
NGL +L+F + H P+ F K L+++A+M+ FD L H+Q
Sbjct: 46 NGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSH 105
Query: 131 --------------RTHPSLLTL---KSMSI--------MLSRISKFQSYEETLEAFDRM 165
+ P L + K M + S I+ F EA +
Sbjct: 106 DLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMV 165
Query: 166 EREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKE 224
+ + +GI+ + ++ + C + A S+F ++ + P+ L+ G
Sbjct: 166 NQMVEMGIKP-DVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCN 224
Query: 225 SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQT 284
SG + M R +P V+T+N ID + K+G F DA L+ EM R++ P++ T
Sbjct: 225 SGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFT 284
Query: 285 ITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEME 344
T+LI+G + + +ARQ+F M + PD+ AY ++I+ +C+ ++ AM++ EM
Sbjct: 285 YTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMS 344
Query: 345 EKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVD 404
+K + + +TY T+ G + +++ M+ P RT +L+ C N +V
Sbjct: 345 QKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVK 404
Query: 405 LGLNLWGYLIDR---GFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQV 455
L ++ + R G P+ ++L+ GLC G+ E+A + M R+R++
Sbjct: 405 KALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDM--RKREM 456
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 95/399 (23%), Positives = 165/399 (41%), Gaps = 19/399 (4%)
Query: 75 RLFAAHSNGL------KALEF---FKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWEL 125
R F H N L KAL F + F + LH L F++A +L
Sbjct: 4 RFFQLHRNRLVKGNSGKALSFSRLLDLSFWVRAFCNYREILRNGLHSLQ----FNEALDL 59
Query: 126 MSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLL 185
+H+ + P L ++ + +L+ I+K + ++ + D ++ +G+ N+L+
Sbjct: 60 FTHMVESRP-LPSIIDFTKLLNVIAKMKKFDVVINLCDHLQ---IMGVSH-DLYTCNLLM 114
Query: 186 QAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFR 244
FC + A S K++ F P+ T L+ GF + ++MV G +
Sbjct: 115 NCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIK 174
Query: 245 PSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQL 304
P VV Y ID CK G A+ LF++ME P + T+L++G A L
Sbjct: 175 PDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSL 234
Query: 305 FDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMK 364
M KR +KPD+ +NA+I + ++ A EL +EM I + TY ++ G
Sbjct: 235 LRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCM 294
Query: 365 SSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHA 424
++ +++ M P L+ FC +VD + ++ + +G +
Sbjct: 295 EGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTIT 354
Query: 425 LDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRML 463
L+ G G+ A E M+ R + +Y +L
Sbjct: 355 YTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVL 393
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 154/347 (44%), Gaps = 16/347 (4%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEET 158
+T D+ K H+ + FDQ P ++ S+ L +++ +
Sbjct: 180 YTTIIDSLCKNGHVNYALSLFDQMENY-----GIRPDVVMYTSLVNGLCNSGRWRDADSL 234
Query: 159 LEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNI 217
L + R+I K FN L+ AF + + +A ++ +++ APN T
Sbjct: 235 LRGMTK--RKI-----KPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTS 287
Query: 218 LLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277
L+ GF G V ++ M +G P VV Y I+G+CK DAM++F EM +
Sbjct: 288 LINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG 347
Query: 278 CLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAM 337
+ T TTLI G G V + A+++F M R + P+I YN ++ L + A+
Sbjct: 348 LTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKAL 407
Query: 338 ELMDEMEEKR---IGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLM 394
+ ++M+++ + + TY+ + GL + LE +++ M + + T +++
Sbjct: 408 MIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIII 467
Query: 395 KFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
+ C +V +NL+ L +G P+ +++GL G EA
Sbjct: 468 QGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEA 514
>sp|Q9LFM6|PP375_ARATH Pentatricopeptide repeat-containing protein At5g11310,
mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2
SV=1
Length = 602
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 187/411 (45%), Gaps = 16/411 (3%)
Query: 90 FKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTH--PSLLTLKSMSIMLS 147
FK+ P FT +P F+ ++ L + R F+ AW L+ R+ +L++ + +++
Sbjct: 122 FKWAEMKPGFTLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIR 181
Query: 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEE--FNVLLQAFCTQKEMKEARSVFVKLL 205
R ++ ++ + AF+ + + K +E VLL A C + ++EA S++++ +
Sbjct: 182 RYARAGMVQQAIRAFEFARS--YEPVCKSATELRLLEVLLDALCKEGHVREA-SMYLERI 238
Query: 206 -----SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK 260
S + P+ + NILL G+ S + E + EM +P+VVTY I+GYC+
Sbjct: 239 GGTMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRM 298
Query: 261 GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAY 320
AM + EEM+ + +I G G + +A + + P I Y
Sbjct: 299 RRVQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTY 358
Query: 321 NAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380
N+++ + + DL A +++ M + + TY+ F K + E LY ++IE
Sbjct: 359 NSLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIE 418
Query: 381 GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEE 440
P T +++K C + ++ L + + + +RG P +L+ LC EE
Sbjct: 419 AGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEE 478
Query: 441 AFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLP 491
AFE + R +++M+ L ++ + D+ + + +L + LP
Sbjct: 479 AFEEFDNAVRRGIIPQYITFKMIDNGL----RSKGMSDMAKRLSSLMSSLP 525
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 153/343 (44%), Gaps = 8/343 (2%)
Query: 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLE 160
P + L+++ + A EL+ ++ + L +K SI++ + K S +
Sbjct: 226 PNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK-YSIIIDGLCKHGSLDNAFN 284
Query: 161 AFDRME-REIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNIL 218
F+ ME + I I + N+L+ FC + + ++ R PN T ++L
Sbjct: 285 LFNEMEMKGITTNIITY-----NILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVL 339
Query: 219 LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVAC 278
+ F + G + E + EM+ RG P +TY IDG+CK+ A ++ + M C
Sbjct: 340 IDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGC 399
Query: 279 LPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAME 338
P+++T LI+G I +LF +M R + D YN +I LN A E
Sbjct: 400 DPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKE 459
Query: 339 LMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFC 398
L EM +++ + VTY + GL + E ++++++ + K +++ C
Sbjct: 460 LFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMC 519
Query: 399 VNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
+VD +L+ L +G P ++++ GLC +G EA
Sbjct: 520 NASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA 562
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 103/426 (24%), Positives = 178/426 (41%), Gaps = 42/426 (9%)
Query: 86 ALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145
A++ F+ + H PT F + +A+ + +D L ++ + L ++SIM
Sbjct: 72 AIDLFR-DMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAH-NLYTLSIM 129
Query: 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL 205
I+ F + AF M + I +G + F+ L+ C + + EA + +++
Sbjct: 130 ---INCFCRCRKLCLAFSAMGKIIKLGYEP-NTITFSTLINGLCLEGRVSEALELVDRMV 185
Query: 206 SR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY-------------- 250
P+ T+N L+ G SG + +MV G +P+ VTY
Sbjct: 186 EMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTA 245
Query: 251 ---------------------NIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLI 289
+I IDG CK G +A LF EME ++ T LI
Sbjct: 246 LAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILI 305
Query: 290 HGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIG 349
G +L +M KR + P++ ++ +I S ++ L A EL EM + I
Sbjct: 306 GGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIA 365
Query: 350 HDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNL 409
D +TY ++ G K + L+ ++ D M+ P RT +L+ +C R+D GL L
Sbjct: 366 PDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLEL 425
Query: 410 WGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQ 469
+ + RG + L+ G C G+ A E ++M+ R+ + +Y++L L
Sbjct: 426 FRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCD 485
Query: 470 ANANEK 475
+EK
Sbjct: 486 NGESEK 491
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 1/218 (0%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKL-LSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
FN+L+ +C + + +F K+ L + T N L+ GF E G + + + EMV
Sbjct: 406 FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMV 465
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
R P++VTY I +DG C G A+ +FE++E+ + +IHG +
Sbjct: 466 SRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVD 525
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF 359
A LF +P + +KP + YN MI L + L+ A L +MEE D TY+ +
Sbjct: 526 DAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILI 585
Query: 360 FGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFF 397
+ KL + + F T+ M++
Sbjct: 586 RAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDML 623
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/384 (20%), Positives = 171/384 (44%), Gaps = 10/384 (2%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSH-VQRTH-PSLLTLKSMSIMLSRISKFQSYE 156
+ P F ++ L +A EL+ V+ H P L+T+ ++ ++
Sbjct: 154 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTL------VNGLCLSG 207
Query: 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTM 215
+ EA +++ + G + + + +L C + A + K+ R +
Sbjct: 208 KEAEAMLLIDKMVEYGCQP-NAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266
Query: 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275
+I++ G + G + ++EM ++G +++TYNI I G+C G + D +L +M +
Sbjct: 267 SIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK 326
Query: 276 VACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA 335
P++ T + LI + +A +L EM R + PD Y ++I + L+
Sbjct: 327 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 386
Query: 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMK 395
A +++D M K + T++ + G K++ ++ +L+ +M V T T L++
Sbjct: 387 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 446
Query: 396 FFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQV 455
FC ++++ L+ ++ R P+ +L+ GLC G E+A E +++ + ++
Sbjct: 447 GFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMEL 506
Query: 456 SEASYRMLQRYLVQANANEKLEDL 479
Y ++ + A+ + DL
Sbjct: 507 DIGIYNIIIHGMCNASKVDDAWDL 530
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 146/328 (44%), Gaps = 10/328 (3%)
Query: 117 RYFDQAWELMSHVQR-THPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRK 175
R+ D A L ++R +P+++T S+++ K E E M I GI
Sbjct: 313 RWDDGAKLLRDMIKRKINPNVVTF---SVLIDSFVKEGKLREAEELHKEM---IHRGIAP 366
Query: 176 FGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFA-PNNKTMNILLLGFKESGDVTAMEMF 234
+ + L+ FC + + +A + ++S+ PN +T NIL+ G+ ++ +
Sbjct: 367 -DTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLEL 425
Query: 235 YHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGL 294
+ +M LRG VTYN I G+C+ G A LF+EM P++ T L+ G
Sbjct: 426 FRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCD 485
Query: 295 VRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVT 354
+A ++F+++ K ++ DIG YN +I + ++ A +L + K + T
Sbjct: 486 NGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKT 545
Query: 355 YHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLI 414
Y+ M GL K L L+ +M E P T +L++ + + L L
Sbjct: 546 YNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELK 605
Query: 415 DRGFCPHGHALDLLVTGLCSRGRWEEAF 442
GF + +++ L S GR +++F
Sbjct: 606 RCGFSVDASTIKMVIDML-SDGRLKKSF 632
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 84/199 (42%)
Query: 265 DAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMI 324
DA+ LF +M LP++ + L + L +M + + ++ + MI
Sbjct: 71 DAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMI 130
Query: 325 SSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFV 384
+ RCR L A M ++ + + +T+ T+ GL + +L DRM+E
Sbjct: 131 NCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK 190
Query: 385 PKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFEC 444
P T+ L+ C++ + + L +++ G P+ ++ +C G+ A E
Sbjct: 191 PDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMEL 250
Query: 445 SKQMLVRRRQVSEASYRML 463
++M R ++ Y ++
Sbjct: 251 LRKMEERNIKLDAVKYSII 269
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 157/351 (44%), Gaps = 10/351 (2%)
Query: 94 LQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHV--QRTHPSLLTLKSMSIMLSRISK 151
+Q P + + + ++A+ELM+ + + P + T ++ ++ + K
Sbjct: 261 VQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTV---INGLCK 317
Query: 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAP 210
YE E F M R G+ S + LL C + ++ E VF + SR P
Sbjct: 318 HGKYERAKEVFAEMLRS---GLSP-DSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVP 373
Query: 211 NNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLF 270
+ + ++ F SG++ M+++ + G P V Y I I GYC+KG AM L
Sbjct: 374 DLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLR 433
Query: 271 EEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRC 330
EM + C + T T++HG + + +A +LF+EM +R L PD +I +
Sbjct: 434 NEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKL 493
Query: 331 RDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTV 390
+L AMEL +M+EKRI D VTY+T+ G K ++ +++ M+ + +P +
Sbjct: 494 GNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISY 553
Query: 391 VMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
+L+ C + +W +I + P + ++ G C G +
Sbjct: 554 SILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDG 604
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/379 (24%), Positives = 165/379 (43%), Gaps = 14/379 (3%)
Query: 76 LFAAHSNGLKALEFFKFTLQHPH--FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT- 132
L +A+S+ E F+ P F+P + ++ L + +++A E+ + + R+
Sbjct: 276 LISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSG 335
Query: 133 -HPSLLTLKSMSIMLSRISKFQSYEETLEAFDRM-EREIFVGIRKFGSEEFNVLLQAFCT 190
P T +S+ L K ET + F M R++ + F S ++ F
Sbjct: 336 LSPDSTTYRSL---LMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSS-----MMSLFTR 387
Query: 191 QKEMKEARSVFVKLL-SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVT 249
+ +A F + + P+N IL+ G+ G ++ +EM+ +G VVT
Sbjct: 388 SGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVT 447
Query: 250 YNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMP 309
YN + G CK+ G+A +LF EM A P T+T LI G + N+ A +LF +M
Sbjct: 448 YNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMK 507
Query: 310 KRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLE 369
++ ++ D+ YN ++ + D++ A E+ +M K I ++Y + L L
Sbjct: 508 EKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLA 567
Query: 370 GVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLV 429
+++D MI P ++K +C + G + +I GF P + + L+
Sbjct: 568 EAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLI 627
Query: 430 TGLCSRGRWEEAFECSKQM 448
G +AF K+M
Sbjct: 628 YGFVREENMSKAFGLVKKM 646
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 134/275 (48%), Gaps = 5/275 (1%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDV-TAMEMFYHEM 238
+N +L C +K + EA +F ++ R P++ T+ IL+ G + G++ AME+F +M
Sbjct: 448 YNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELF-QKM 506
Query: 239 VLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNI 298
+ R VVTYN +DG+ K G A ++ +M LP+ + + L++ ++
Sbjct: 507 KEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHL 566
Query: 299 HQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTM 358
+A +++DEM +N+KP + N+MI R + + +++M + D ++Y+T+
Sbjct: 567 AEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTL 626
Query: 359 FFGLMKSSGLEGVCKLYDRMIE--GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR 416
+G ++ + L +M E G VP T ++ FC ++ + +I+R
Sbjct: 627 IYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIER 686
Query: 417 GFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451
G P ++ G S+ EAF +ML R
Sbjct: 687 GVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQR 721
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 150/349 (42%), Gaps = 11/349 (3%)
Query: 76 LFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPS 135
LF N KAL +F +++ P + + R A L + + +
Sbjct: 384 LFTRSGNLDKALMYFN-SVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQ-QGC 441
Query: 136 LLTLKSMSIMLSRISKFQSYEETLEAFDRM-EREIFVGIRKFGSEEFNVLLQAFCTQKEM 194
+ + + + +L + K + E + F+ M ER +F S +L+ C +
Sbjct: 442 AMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPD-----SYTLTILIDGHCKLGNL 496
Query: 195 KEARSVFVKLL-SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIR 253
+ A +F K+ R + T N LL GF + GD+ + + +MV + P+ ++Y+I
Sbjct: 497 QNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSIL 556
Query: 254 IDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNL 313
++ C KG +A R+++EM P++ ++I G N ++M
Sbjct: 557 VNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGF 616
Query: 314 KPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIG--HDNVTYHTMFFGLMKSSGLEGV 371
PD +YN +I +R +++ A L+ +MEE++ G D TY+++ G + + ++
Sbjct: 617 VPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEA 676
Query: 372 CKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420
+ +MIE P T ++ F + + ++ RGF P
Sbjct: 677 EVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSP 725
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 93/414 (22%), Positives = 169/414 (40%), Gaps = 28/414 (6%)
Query: 56 QHLPQTTPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILAR 115
HL + PL+ V VL R + G + ++ F P+F T + +HIL R
Sbjct: 71 NHLIRLNPLA---VVEVLYRCRNDLTLGQRFVDQLGF--HFPNFKHTSLSLSAMIHILVR 125
Query: 116 M-RYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFD----------- 163
R D L+ ++R+ S L I+ S S F + FD
Sbjct: 126 SGRLSDAQSCLLRMIRRSGVSRL-----EIVNSLDSTFSNCGSNDSVFDLLIRTYVQARK 180
Query: 164 -RMEREIFVGIRKFG----SEEFNVLLQAFCTQKEMKEARSVFVKLL-SRFAPNNKTMNI 217
R E F +R G + N L+ + ++ A V+ ++ S N T+NI
Sbjct: 181 LREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNI 240
Query: 218 LLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277
++ + G + + F ++ +G P +VTYN I Y KG +A L M
Sbjct: 241 MVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKG 300
Query: 278 CLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAM 337
P + T T+I+G +A+++F EM + L PD Y +++ + D+
Sbjct: 301 FSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETE 360
Query: 338 ELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFF 397
++ +M + + D V + +M +S L+ ++ + E +P +L++ +
Sbjct: 361 KVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGY 420
Query: 398 CVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451
C + + +NL ++ +G + ++ GLC R EA + +M R
Sbjct: 421 CRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER 474
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 89/175 (50%), Gaps = 3/175 (1%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
+++L+ A C++ + EA V+ +++S+ P N ++ G+ SG+ + E F +M+
Sbjct: 553 YSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMI 612
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEME--RVACLPSLQTITTLIHGAGLVRN 297
GF P ++YN I G+ ++ A L ++ME + +P + T +++HG
Sbjct: 613 SEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQ 672
Query: 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDN 352
+ +A + +M +R + PD Y MI+ + +L A + DEM ++ D+
Sbjct: 673 MKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDD 727
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 153/325 (47%), Gaps = 12/325 (3%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLL-----SRFAPNNKTMNILLLGFKESGDVTAMEMFY 235
+NVL+ C + + EA +K L S PN T NI+L +G E
Sbjct: 277 YNVLVNGICKEGRLDEA----IKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332
Query: 236 HEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLV 295
+M+ +GF PSVVT+NI I+ C+KG G A+ + E+M + C P+ + L+HG
Sbjct: 333 ADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKE 392
Query: 296 RNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTY 355
+ + +A + + M R PDI YN M+++L + + A+E+++++ K +TY
Sbjct: 393 KKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITY 452
Query: 356 HTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLID 415
+T+ GL K+ KL D M P T T L+ +VD + +
Sbjct: 453 NTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFER 512
Query: 416 RGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLV-QANANE 474
G P+ + ++ GLC + + A + M+ R + +E SY +L L + A E
Sbjct: 513 MGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKE 572
Query: 475 KLEDLDRMIKNLQAVLPPPTRQQVA 499
LE L+ + + ++ + +QVA
Sbjct: 573 ALELLNELCN--KGLMKKSSAEQVA 595
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/383 (22%), Positives = 167/383 (43%), Gaps = 19/383 (4%)
Query: 88 EFFKFTLQHPHFTPTPDAFEKTLHI-----LARMRYFDQAWELMSHVQRTHPSLLTLKSM 142
E FKF + PD T I L + R + E++ P ++T
Sbjct: 120 EGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAV-PDVITY--- 175
Query: 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFV 202
++M+S K L DRM V +N +L++ C ++K+A V
Sbjct: 176 NVMISGYCKAGEINNALSVLDRMSVSPDV-------VTYNTILRSLCDSGKLKQAMEVLD 228
Query: 203 KLLSRFA-PNNKTMNILLLG-FKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK 260
++L R P+ T IL+ ++SG AM++ EM RG P VVTYN+ ++G CK+
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLL-DEMRDRGCTPDVVTYNVLVNGICKE 287
Query: 261 GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAY 320
G +A++ +M C P++ T ++ A +L +M ++ P + +
Sbjct: 288 GRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTF 347
Query: 321 NAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380
N +I+ L R L A++++++M + ++++Y+ + G K ++ + +RM+
Sbjct: 348 NILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVS 407
Query: 381 GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEE 440
P T ++ C + +V+ + + L +G P + ++ GL G+ +
Sbjct: 408 RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGK 467
Query: 441 AFECSKQMLVRRRQVSEASYRML 463
A + +M + + +Y L
Sbjct: 468 AIKLLDEMRAKDLKPDTITYSSL 490
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 115/264 (43%), Gaps = 3/264 (1%)
Query: 206 SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD 265
S FA + N L +G++ F MV G P ++ I G+C+ G
Sbjct: 96 SSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRK 155
Query: 266 AMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325
A ++ E +E +P + T +I G I+ A + D M ++ PD+ YN ++
Sbjct: 156 AAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILR 212
Query: 326 SLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP 385
SL L AME++D M ++ D +TY + + SG+ KL D M + P
Sbjct: 213 SLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTP 272
Query: 386 KTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECS 445
T +L+ C R+D + + G P+ ++++ +CS GRW +A +
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332
Query: 446 KQMLVRRRQVSEASYRMLQRYLVQ 469
ML + S ++ +L +L +
Sbjct: 333 ADMLRKGFSPSVVTFNILINFLCR 356
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 142/300 (47%), Gaps = 5/300 (1%)
Query: 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFV 202
S ++ + K++ ++ L F ME + G+R ++ L+ C + +A +
Sbjct: 264 STVIDSLCKYRHEDDALNLFTEMENK---GVRP-NVITYSSLISCLCNYERWSDASRLLS 319
Query: 203 KLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261
++ R PN T N L+ F + G + E Y EM+ R P + TY+ I+G+C
Sbjct: 320 DMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 379
Query: 262 CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYN 321
+A +FE M C P++ T TLI+G + I + +LF EM +R L + Y
Sbjct: 380 RLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYT 439
Query: 322 AMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381
+I + RD + A + +M + + +TY+T+ GL K+ LE +++ +
Sbjct: 440 TLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 499
Query: 382 KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
K P T ++++ C +V+ G +L+ L +G P + +++G C +G EEA
Sbjct: 500 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEA 559
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 168/377 (44%), Gaps = 16/377 (4%)
Query: 101 PTPDAFE--KTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEET 158
P P FE K L +A+M+ FD L +QR S L + +I+++ +
Sbjct: 81 PLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISH-NLYTYNILINCFCRRSQISLA 139
Query: 159 LEAFDRMEREIFVGIRKFGSE----EFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNK 213
L +M K G E + LL +C K + +A ++ +++ + P+
Sbjct: 140 LALLGKM--------MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 191
Query: 214 TMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273
T L+ G + MV RG +P++VTY + ++G CK+G A L +M
Sbjct: 192 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 251
Query: 274 ERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDL 333
E ++ +T+I R+ A LF EM + ++P++ Y+++IS L
Sbjct: 252 EAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERW 311
Query: 334 NAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVML 393
+ A L+ +M E++I + VT++ + +K L KLYD MI+ P T L
Sbjct: 312 SDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 371
Query: 394 MKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRR 453
+ FC++ R+D +++ +I + P+ + L+ G C R +E E ++M R
Sbjct: 372 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGL 431
Query: 454 QVSEASYRMLQRYLVQA 470
+ +Y L QA
Sbjct: 432 VGNTVTYTTLIHGFFQA 448
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 136/322 (42%), Gaps = 45/322 (13%)
Query: 106 FEKTLHILARMRYFDQAWELMSHVQR--THPSLLTLKSMSIMLSRISKFQSYEETLEAFD 163
+ + L + R+ D A L + ++ P+++T S+ L ++ L D
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLS--D 320
Query: 164 RMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGF 222
+ER+I + F N L+ AF + ++ EA ++ +++ R P+ T + L+ GF
Sbjct: 321 MIERKINPNVVTF-----NALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 375
Query: 223 KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL 282
+ + + M+ + P+VVTYN I+G+CK + + LF EM + + +
Sbjct: 376 CMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNT 435
Query: 283 QTITTLIHG---------------------------------AGLVRN--IHQARQLFDE 307
T TTLIHG GL +N + +A +F+
Sbjct: 436 VTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEY 495
Query: 308 MPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG 367
+ + ++P I YN MI + + + +L + K + D + Y+TM G +
Sbjct: 496 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGL 555
Query: 368 LEGVCKLYDRMIEGKFVPKTRT 389
E L+ +M E +P + T
Sbjct: 556 KEEADALFRKMREDGPLPDSGT 577
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 84/196 (42%)
Query: 265 DAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMI 324
DA+ LF M + LPS+ L+ ++ L ++M + + ++ YN +I
Sbjct: 68 DAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILI 127
Query: 325 SSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFV 384
+ R ++ A+ L+ +M + VT ++ G + L D+M+E +
Sbjct: 128 NCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYR 187
Query: 385 PKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFEC 444
P T T L+ ++ + + L ++ RG P+ ++V GLC RG + AF
Sbjct: 188 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNL 247
Query: 445 SKQMLVRRRQVSEASY 460
+M + + + Y
Sbjct: 248 LNKMEAAKIEANVVIY 263
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 157/331 (47%), Gaps = 6/331 (1%)
Query: 119 FDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS 178
+ A +L S + ++ P ++ + +LS I K + Y+ + +ME +GIR
Sbjct: 66 LNDAIDLFSDMVKSRP-FPSIVDFNRLLSAIVKLKKYDVVISLGKKME---VLGIRN-DL 120
Query: 179 EEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHE 237
FN+++ FC ++ A S+ K+L + P+ T+ L+ GF V+ +
Sbjct: 121 YTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDK 180
Query: 238 MVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN 297
MV G++P +V YN ID CK DA F+E+ER P++ T T L++G
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 240
Query: 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHT 357
A +L +M K+ + P++ Y+A++ + ++ + A EL +EM I D VTY +
Sbjct: 241 WSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS 300
Query: 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRG 417
+ GL ++ +++D M+ + + L+ FC RV+ G+ L+ + RG
Sbjct: 301 LINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 360
Query: 418 FCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448
+ + L+ G G ++A E QM
Sbjct: 361 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 133/298 (44%), Gaps = 5/298 (1%)
Query: 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKL 204
++ + K + + + F +ER+ GIR + L+ C +A + +
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERK---GIRP-NVVTYTALVNGLCNSSRWSDAARLLSDM 251
Query: 205 LSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263
+ + PN T + LL F ++G V + + EMV P +VTY+ I+G C
Sbjct: 252 IKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRI 311
Query: 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323
+A ++F+ M CL + + TLI+G + + +LF EM +R L + YN +
Sbjct: 312 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 371
Query: 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383
I + D++ A E +M+ I D TY+ + GL + LE +++ M + +
Sbjct: 372 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 431
Query: 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
T +++ C +V+ +L+ L +G P +++GLC++G E
Sbjct: 432 DLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEV 489
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 109/240 (45%), Gaps = 17/240 (7%)
Query: 91 KFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQR--THPSLLTLKSMSIMLSR 148
K T ++ DAF K +L +A EL + R P ++T S+ ++
Sbjct: 255 KITPNVITYSALLDAFVKNGKVL-------EAKELFEEMVRMSIDPDIVTYSSL---ING 304
Query: 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR- 207
+ +E + FD M + + +N L+ FC K +++ +F ++ R
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCLA----DVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 360
Query: 208 FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAM 267
N T N L+ GF ++GDV + F+ +M G P + TYNI + G C G A+
Sbjct: 361 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKAL 420
Query: 268 RLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSL 327
+FE+M++ + T TT+I G + +A LF + + LKPDI Y M+S L
Sbjct: 421 VIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL 480
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 125/297 (42%), Gaps = 13/297 (4%)
Query: 86 ALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHV--QRTHPSLLTLKSMS 143
A +FFK ++ P + ++ L + A L+S + ++ P+++T S
Sbjct: 209 AFDFFK-EIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITY---S 264
Query: 144 IMLSRISKFQSYEETLEAFDRMER-EIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFV 202
+L K E E F+ M R I I + S L+ C + EA +F
Sbjct: 265 ALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS-----LINGLCLHDRIDEANQMFD 319
Query: 203 KLLSRFA-PNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261
++S+ + + N L+ GF ++ V + EM RG + VTYN I G+ + G
Sbjct: 320 LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAG 379
Query: 262 CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYN 321
A F +M+ P + T L+ G + +A +F++M KR + DI Y
Sbjct: 380 DVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYT 439
Query: 322 AMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRM 378
+I + + + A L + K + D VTY TM GL L V LY +M
Sbjct: 440 TVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 117/284 (41%), Gaps = 39/284 (13%)
Query: 230 AMEMFYHEMVLRGFRPSVVTYN--------------------------IRIDGY------ 257
A+++F + R F PS+V +N IR D Y
Sbjct: 69 AIDLFSDMVKSRPF-PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVI 127
Query: 258 -CKKGCF--GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLK 314
C CF A+ + +M ++ P TI +L++G + A L D+M + K
Sbjct: 128 NCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYK 187
Query: 315 PDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKL 374
PDI AYNA+I SL + + +N A + E+E K I + VTY + GL SS +L
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247
Query: 375 YDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS 434
MI+ K P T L+ F N +V L+ ++ P L+ GLC
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL 307
Query: 435 RGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLED 478
R +EA + M+ + SY L +A +++ED
Sbjct: 308 HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKA---KRVED 348
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 4/224 (1%)
Query: 263 FGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNA 322
DA+ LF +M + PS+ L+ ++ L +M ++ D+ +N
Sbjct: 66 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125
Query: 323 MISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK 382
+I+ C ++ A+ ++ +M + D VT ++ G + + + L D+M+E
Sbjct: 126 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 185
Query: 383 FVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAF 442
+ P ++ C RV+ + + + +G P+ LV GLC+ RW +A
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 245
Query: 443 ECSKQMLVRRRQVSEASYRMLQRYLVQAN----ANEKLEDLDRM 482
M+ ++ + +Y L V+ A E E++ RM
Sbjct: 246 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM 289
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 166/370 (44%), Gaps = 10/370 (2%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEET 158
F P + L+++ + A EL+ ++ + L +K SI++ + K S +
Sbjct: 224 FQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK-YSIIIDGLCKDGSLDNA 282
Query: 159 LEAFDRMEREIFVGIRKFGSE--EFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTM 215
F+ ME I+ F ++ +N L+ FC + + ++ R +PN T
Sbjct: 283 FNLFNEME------IKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTF 336
Query: 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275
++L+ F + G + + EM+ RG P+ +TYN IDG+CK+ +A+++ + M
Sbjct: 337 SVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMIS 396
Query: 276 VACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA 335
C P + T LI+G I +LF EM R + + YN ++ + L
Sbjct: 397 KGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEV 456
Query: 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMK 395
A +L EM +R+ D V+Y + GL + LE +++ ++ + K ++++
Sbjct: 457 AKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIH 516
Query: 396 FFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQV 455
C +VD +L+ L +G A +++++ LC + +A ++M
Sbjct: 517 GMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAP 576
Query: 456 SEASYRMLQR 465
E +Y +L R
Sbjct: 577 DELTYNILIR 586
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 132/304 (43%), Gaps = 21/304 (6%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHVQR-THPSLLTLKSMSIMLSRISKFQSYEE 157
F+ D+F K ++R DQ + M +QR P+ +T S+ + K EE
Sbjct: 336 FSVLIDSFVKE----GKLREADQLLKEM--MQRGIAPNTITYNSL---IDGFCKENRLEE 386
Query: 158 TLEAFDRMEREIFVGIRKFGSEE---FNVLLQAFCTQKEMKEARSVFVKL-LSRFAPNNK 213
++ D M I K + FN+L+ +C + + +F ++ L N
Sbjct: 387 AIQMVDLM-------ISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTV 439
Query: 214 TMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273
T N L+ GF +SG + + + EMV R RP +V+Y I +DG C G A+ +F ++
Sbjct: 440 TYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKI 499
Query: 274 ERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDL 333
E+ + +IHG + A LF +P + +K D AYN MIS L R L
Sbjct: 500 EKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSL 559
Query: 334 NAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVML 393
+ A L +M E+ D +TY+ + + +L + M F TV M+
Sbjct: 560 SKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMV 619
Query: 394 MKFF 397
+
Sbjct: 620 INML 623
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/365 (23%), Positives = 151/365 (41%), Gaps = 40/365 (10%)
Query: 120 DQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE 179
D A +L + ++ P L T+ + + S I+K + YE L +ME + GI
Sbjct: 70 DDAVDLFRDMIQSRP-LPTVIDFNRLFSAIAKTKQYELVLALCKQMESK---GI-AHSIY 124
Query: 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
++++ FC +++ A F+ K M +
Sbjct: 125 TLSIMINCFCRCRKLSYA----------FSTMGKIMKL---------------------- 152
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
G+ P V +N ++G C + +A+ L + M + P+L T+ TL++G L +
Sbjct: 153 --GYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVS 210
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF 359
A L D M + +P+ Y +++ + + AMEL+ +MEE+ I D V Y +
Sbjct: 211 DAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIII 270
Query: 360 FGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFC 419
GL K L+ L++ M F T L+ FC R D G L +I R
Sbjct: 271 DGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKIS 330
Query: 420 PHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQAN-ANEKLED 478
P+ +L+ G+ EA + K+M+ R + +Y L + N E ++
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQM 390
Query: 479 LDRMI 483
+D MI
Sbjct: 391 VDLMI 395
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 5/145 (3%)
Query: 305 FDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMK 364
F RNL +Y +SS + + A++L +M + R + ++ +F + K
Sbjct: 46 FSTFSDRNL-----SYRDKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAK 100
Query: 365 SSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHA 424
+ E V L +M T+ +++ FC ++ + G ++ G+ P
Sbjct: 101 TKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVI 160
Query: 425 LDLLVTGLCSRGRWEEAFECSKQML 449
+ L+ GLC R EA E +M+
Sbjct: 161 FNTLLNGLCLECRVSEALELVDRMV 185
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 160/348 (45%), Gaps = 29/348 (8%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHVQR--THPSLLTLKSMSIMLSRISKFQSYE 156
F+P+ A + L + ++A L+ V P+L ++ + + K + +
Sbjct: 328 FSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNAL---IDSLCKGRKFH 384
Query: 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-----RFAPN 211
E FDRM + +G+R +++L+ FC + ++ A S +++ P
Sbjct: 385 EAELLFDRMGK---IGLRP-NDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPY 440
Query: 212 NKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFE 271
N +N G + GD++A E F EM+ + P+VVTY + GYC KG A+RL+
Sbjct: 441 NSLIN----GHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYH 496
Query: 272 EMERVACLPSLQTITTLIHG---AGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLI 328
EM PS+ T TTL+ G AGL+R+ A +LF+EM + N+KP+ YN MI
Sbjct: 497 EMTGKGIAPSIYTFTTLLSGLFRAGLIRD---AVKLFNEMAEWNVKPNRVTYNVMIEGYC 553
Query: 329 RCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTR 388
D++ A E + EM EK I D +Y + GL + D + +G
Sbjct: 554 EEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEI 613
Query: 389 TVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRG 436
L+ FC +++ L++ ++ RG LDL+ G+ G
Sbjct: 614 CYTGLLHGFCREGKLEEALSVCQEMVQRGV-----DLDLVCYGVLIDG 656
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 124/283 (43%), Gaps = 32/283 (11%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
+ L+ +C++ ++ +A ++ ++ + AP+ T LL G +G + ++EM
Sbjct: 475 YTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMA 534
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
+P+ VTYN+ I+GYC++G A +EM +P + LIHG L
Sbjct: 535 EWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQAS 594
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHT-- 357
+A+ D + K N + + Y ++ R L A+ + EM ++ + D V Y
Sbjct: 595 EAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLI 654
Query: 358 ----------MFFGLMK---SSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVD 404
+FFGL+K GL+ +Y MI+ K KT +F+
Sbjct: 655 DGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAK--SKTG-----------DFKEA 701
Query: 405 LGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA-FECSK 446
G +W +I+ G P+ ++ GLC G EA CSK
Sbjct: 702 FG--IWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSK 742
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 87/413 (21%), Positives = 165/413 (39%), Gaps = 15/413 (3%)
Query: 84 LKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT--HPSLLTLKS 141
L + FK + P LH L + R+F A EL + + P +
Sbjct: 173 LDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTG 232
Query: 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVF 201
+ L + +E + + ++ + +NVL+ C ++++ EA +
Sbjct: 233 VIRSLCELKDLSRAKEMIAHMEATGCDVNI-------VPYNVLIDGLCKKQKVWEAVGIK 285
Query: 202 VKLLSR-FAPNNKTMNILLLGFKESGDV-TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259
L + P+ T L+ G + + +EM + LR F PS + ++G K
Sbjct: 286 KDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLR-FSPSEAAVSSLVEGLRK 344
Query: 260 KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGA 319
+G +A+ L + + P+L LI R H+A LFD M K L+P+
Sbjct: 345 RGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVT 404
Query: 320 YNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMI 379
Y+ +I R L+ A+ + EM + + Y+++ G K + MI
Sbjct: 405 YSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMI 464
Query: 380 EGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWE 439
K P T LM +C +++ L L+ + +G P + L++GL G
Sbjct: 465 NKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIR 524
Query: 440 EAFECSKQMLVRRRQVSEASYR-MLQRYLVQANANEKLEDLDRMIKNLQAVLP 491
+A + +M + + +Y M++ Y + + ++ E L M + + ++P
Sbjct: 525 DAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTE--KGIVP 575
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 128/296 (43%), Gaps = 9/296 (3%)
Query: 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV--LLQAFCTQKEMKEARSVFVKLLS 206
+ K Q +E LE D M +F E V L++ + +++EA ++ +++
Sbjct: 307 LCKVQEFEIGLEMMDEML------CLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVD 360
Query: 207 -RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD 265
+PN N L+ + E+ + M G RP+ VTY+I ID +C++G
Sbjct: 361 FGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDT 420
Query: 266 AMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325
A+ EM S+ +LI+G +I A EM + L+P + Y +++
Sbjct: 421 ALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMG 480
Query: 326 SLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP 385
+N A+ L EM K I T+ T+ GL ++ + KL++ M E P
Sbjct: 481 GYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKP 540
Query: 386 KTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
T ++++ +C + + ++G P ++ L+ GLC G+ EA
Sbjct: 541 NRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEA 596
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 126/291 (43%), Gaps = 8/291 (2%)
Query: 166 EREIFVGIRKFGSEEFN-----VLLQAFCTQKEMKEARSVFVKLLSRFAPNN-KTMNILL 219
E ++FV G+ E N LL FC + +++EA SV +++ R + +L+
Sbjct: 595 EAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLI 654
Query: 220 LGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACL 279
G + D EM RG +P V Y ID K G F +A +++ M C+
Sbjct: 655 DGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCV 714
Query: 280 PSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCR-DLNAAME 338
P+ T T +I+G +++A L +M + P+ Y + L + D+ A+E
Sbjct: 715 PNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVE 774
Query: 339 LMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFC 398
L + + K + + TY+ + G + +E +L RMI P T ++ C
Sbjct: 775 LHNAIL-KGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELC 833
Query: 399 VNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQML 449
V + LW + ++G P A + L+ G C G +A E +ML
Sbjct: 834 RRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEML 884
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 129/311 (41%), Gaps = 10/311 (3%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
F LL +++A +F ++ PN T N+++ G+ E GD++ F EM
Sbjct: 510 FTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMT 569
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
+G P +Y I G C G +A + + + C + T L+HG +
Sbjct: 570 EKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLE 629
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF 359
+A + EM +R + D+ Y +I ++ +D L+ EM ++ + D+V Y +M
Sbjct: 630 EALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMI 689
Query: 360 FGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFC 419
K+ + ++D MI VP T ++ C V+ L +
Sbjct: 690 DAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSV 749
Query: 420 P----HGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQR-YLVQANANE 474
P +G LD+L G ++A E +L + + A+Y ML R + Q E
Sbjct: 750 PNQVTYGCFLDILTKGEVD---MQKAVELHNAIL-KGLLANTATYNMLIRGFCRQGRIEE 805
Query: 475 KLEDLDRMIKN 485
E + RMI +
Sbjct: 806 ASELITRMIGD 816
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 135/362 (37%), Gaps = 56/362 (15%)
Query: 71 NVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQ 130
NV+ + + KA EF K + P ++ +H L QA E V
Sbjct: 546 NVMIEGYCEEGDMSKAFEFLK-EMTEKGIVPDTYSYRPLIHGLCLT---GQASEAKVFVD 601
Query: 131 RTHPSLLTLKSMSI--MLSRISKFQSYEETLEAFDRM-EREIFVGIRKFGSEEFNVLLQA 187
H L + +L + EE L M +R + + + +G VL+
Sbjct: 602 GLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYG-----VLIDG 656
Query: 188 FCTQKEMKEARSVFVKLLSR-----FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRG 242
K+ R +F LL P++ ++ ++GD + M+ G
Sbjct: 657 SLKHKD----RKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEG 712
Query: 243 FRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLI------------- 289
P+ VTY I+G CK G +A L +M+ V+ +P+ T +
Sbjct: 713 CVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKA 772
Query: 290 ---HGA---GLVRN----------------IHQARQLFDEMPKRNLKPDIGAYNAMISSL 327
H A GL+ N I +A +L M + PD Y MI+ L
Sbjct: 773 VELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINEL 832
Query: 328 IRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKT 387
R D+ A+EL + M EK I D V Y+T+ G + + +L + M+ +P
Sbjct: 833 CRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNN 892
Query: 388 RT 389
+T
Sbjct: 893 KT 894
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 9/216 (4%)
Query: 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKL 204
M+ SK ++E +D M E V + ++ C + EA + K+
Sbjct: 688 MIDAKSKTGDFKEAFGIWDLMINEGCVP----NEVTYTAVINGLCKAGFVNEAEVLCSKM 743
Query: 205 LSRFAPNNKTMNILLLGFKESGDV---TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261
+ N+ L G+V A+E+ H +L+G + TYN+ I G+C++G
Sbjct: 744 QPVSSVPNQVTYGCFLDILTKGEVDMQKAVEL--HNAILKGLLANTATYNMLIRGFCRQG 801
Query: 262 CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYN 321
+A L M P T TT+I+ ++ +A +L++ M ++ ++PD AYN
Sbjct: 802 RIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYN 861
Query: 322 AMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHT 357
+I ++ A EL +EM + + +N T T
Sbjct: 862 TLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRT 897
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 140/353 (39%), Gaps = 49/353 (13%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
+NV+++ +C + +M +A ++ + P+ + L+ G +G + ++F +
Sbjct: 545 YNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLH 604
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
+ + Y + G+C++G +A+ + +EM + L LI G+ H
Sbjct: 605 KGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGS----LKH 660
Query: 300 QARQLF----DEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTY 355
+ R+LF EM R LKPD Y +MI + + D A + D M + + VTY
Sbjct: 661 KDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTY 720
Query: 356 HTMFFGLMKSS------------------------------------GLEGVCKLYDRMI 379
+ GL K+ ++ +L++ ++
Sbjct: 721 TAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAIL 780
Query: 380 EGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWE 439
+G + T T ML++ FC R++ L +I G P ++ LC R +
Sbjct: 781 KG-LLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVK 839
Query: 440 EAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDL-DRMIKNLQAVLP 491
+A E M + + +Y L A K +L + M++ Q ++P
Sbjct: 840 KAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLR--QGLIP 890
>sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550,
mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2
SV=1
Length = 448
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 182/391 (46%), Gaps = 13/391 (3%)
Query: 66 STLVENVLGRLFAAHSNGL-KALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWE 124
S+ + + +SN KALEFF + + F T + F + + IL + F+ +W
Sbjct: 43 SSYDQKTVCEALTCYSNDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWA 102
Query: 125 LMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184
L++ + S+ + I+ R +E ++A+D+++ +R S F L
Sbjct: 103 LINRMIGNTESVPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDD---FNLRDETS--FYNL 157
Query: 185 LQAFCTQKEMKEARSV-FVK--LLSRFA-PNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240
+ A C K + EA + F K + + F+ N K N++L G+ + G + ++ +M
Sbjct: 158 VDALCEHKHVVEAEELCFGKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWKKMDT 217
Query: 241 RGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQ 300
G + +Y+I +D CK G A++L++EM+ + T+I G + +
Sbjct: 218 EGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEF 277
Query: 301 ARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFF 360
++F EM +R +P++ +N +I L + A ++DEM ++ D++TY +F
Sbjct: 278 GIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFS 337
Query: 361 GLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420
L K S + L+ RMI PK T VMLM+ F + L +W + + G P
Sbjct: 338 RLEKPS---EILSLFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTP 394
Query: 421 HGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451
A + ++ L +G + A E ++M+ R
Sbjct: 395 DSAAYNAVIDALIQKGMLDMAREYEEEMIER 425
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 140/288 (48%), Gaps = 8/288 (2%)
Query: 156 EETLEAFDRM-EREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL-SRFAPNNK 213
+E ++ F +M + E F +R + VL+++ C + EA ++ ++ + PN
Sbjct: 305 DEAMDLFVKMKDDECFPTVRTY-----TVLIKSLCGSERKSEALNLVKEMEETGIKPNIH 359
Query: 214 TMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273
T +L+ +M+ +G P+V+TYN I+GYCK+G DA+ + E M
Sbjct: 360 TYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELM 419
Query: 274 ERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDL 333
E P+ +T LI G N+H+A + ++M +R + PD+ YN++I R +
Sbjct: 420 ESRKLSPNTRTYNELIKGY-CKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNF 478
Query: 334 NAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVML 393
++A L+ M ++ + D TY +M L KS +E C L+D + + P L
Sbjct: 479 DSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTAL 538
Query: 394 MKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
+ +C +VD + ++ + P+ + L+ GLC+ G+ +EA
Sbjct: 539 IDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEA 586
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 153/346 (44%), Gaps = 7/346 (2%)
Query: 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDR 164
A+ +H L R D+A +L + + T+++ ++++ + + E L
Sbjct: 290 AYTHLIHGLCVARRIDEAMDLFVKM-KDDECFPTVRTYTVLIKSLCGSERKSEALNLVKE 348
Query: 165 MEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFK 223
ME GI+ + VL+ + C+Q + ++AR + ++L + PN T N L+ G+
Sbjct: 349 MEE---TGIKP-NIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYC 404
Query: 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQ 283
+ G + M R P+ TYN I GYCK AM + +M LP +
Sbjct: 405 KRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVV 463
Query: 284 TITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEM 343
T +LI G N A +L M R L PD Y +MI SL + + + A +L D +
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL 523
Query: 344 EEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRV 403
E+K + + V Y + G K+ ++ + ++M+ +P + T L+ C + ++
Sbjct: 524 EQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKL 583
Query: 404 DLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQML 449
L ++ G P +L+ L G ++ A+ +QML
Sbjct: 584 KEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQML 629
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 130/275 (47%), Gaps = 6/275 (2%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
+N L+ +C + +++A V + SR +PN +T N L+ G+ +S AM + ++M+
Sbjct: 396 YNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVL-NKML 454
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
R P VVTYN IDG C+ G F A RL M +P T T++I + +
Sbjct: 455 ERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVE 514
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF 359
+A LFD + ++ + P++ Y A+I + ++ A ++++M K +++T++ +
Sbjct: 515 EACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALI 574
Query: 360 FGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFC 419
GL L+ L ++M++ P T +L+ + D + + ++ G
Sbjct: 575 HGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTK 634
Query: 420 PHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQ 454
P H + C GR +A + M+ + R+
Sbjct: 635 PDAHTYTTFIQTYCREGRLLDA----EDMMAKMRE 665
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/434 (20%), Positives = 181/434 (41%), Gaps = 53/434 (12%)
Query: 59 PQTTPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRY 118
P + S + + + LF+ + AL F + Q+P + + ++ L +L Y
Sbjct: 79 PSLKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGY 138
Query: 119 FDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS 178
+++ + ++ S+ + + +++K + +E ++ ++ +G
Sbjct: 139 VGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFE--------LKYKLIIGC----- 185
Query: 179 EEFNVLLQAFCTQKEMKEARSVFVKLL-SRFAPNNKTMNILLLGFKESGDVTAMEMFYHE 237
+N LL + + E + V++++L + PN T N ++ G+ + G+V + +
Sbjct: 186 --YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSK 243
Query: 238 MVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN 297
+V G P TY I GYC++ A ++F EM C + T LIHG + R
Sbjct: 244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR 303
Query: 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHT 357
I +A LF +M P + Y +I SL + A+ L+ EMEE I
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIK-------- 355
Query: 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRG 417
P T +L+ C + + L G ++++G
Sbjct: 356 ---------------------------PNIHTYTVLIDSLCSQCKFEKARELLGQMLEKG 388
Query: 418 FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLE 477
P+ + L+ G C RG E+A + + M R+ + +Y L + ++N ++ +
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMG 448
Query: 478 DLDRMIKNLQAVLP 491
L++M++ + VLP
Sbjct: 449 VLNKMLE--RKVLP 460
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 110/280 (39%), Gaps = 19/280 (6%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
+ ++ + C K ++EA +F L + PN L+ G+ ++G V + +M+
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKML 559
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
+ P+ +T+N I G C G +A L E+M ++ P++ T T LIH +
Sbjct: 560 SKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFD 619
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF 359
A F +M KPD Y I + R L A ++M +M E + D TY ++
Sbjct: 620 HAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679
Query: 360 FGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKF---------------FCV---NF 401
G + RM + P T + L+K C
Sbjct: 680 KGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMM 739
Query: 402 RVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
D + L +++ P+ + + L+ G+C G A
Sbjct: 740 EFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVA 779
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/388 (20%), Positives = 142/388 (36%), Gaps = 70/388 (18%)
Query: 114 ARMRYFDQAWELMSHVQRTH--PSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFV 171
R FD A+ L+S + P T SM + + K + EE + FD +E++
Sbjct: 473 CRSGNFDSAYRLLSLMNDRGLVPDQWTYTSM---IDSLCKSKRVEEACDLFDSLEQK--- 526
Query: 172 GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFA-PNNKTMNILLLGFKESGDVTA 230
G+ + L+ +C ++ EA + K+LS+ PN+ T N L+ G G +
Sbjct: 527 GVNP-NVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKE 585
Query: 231 MEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIH 290
+ +MV G +P+V T I I K G F A F++M P T TT I
Sbjct: 586 ATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQ 645
Query: 291 GAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISS-------------LIRCRD----- 332
+ A + +M + + PD+ Y+++I L R RD
Sbjct: 646 TYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEP 705
Query: 333 -----------------------------------LNAAMELMDEMEEKRIGHDNVTYHT 357
+ +EL+++M E + + +Y
Sbjct: 706 SQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEK 765
Query: 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRG 417
+ G+ + L K++D M + + + V + C + N ++D
Sbjct: 766 LILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKH---NEAAKVVDDM 822
Query: 418 FC----PHGHALDLLVTGLCSRGRWEEA 441
C P + +L+ GL +G E
Sbjct: 823 ICVGHLPQLESCKVLICGLYKKGEKERG 850
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 5/186 (2%)
Query: 107 EKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRME 166
E L ++ M FD EL+ + H KS ++ I + + + FD M+
Sbjct: 729 EPELCAMSNMMEFDTVVELLEKMVE-HSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQ 787
Query: 167 REIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKES 225
R + + FN LL C K+ EA V ++ P ++ +L+ G +
Sbjct: 788 RNEGISPSEL---VFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKK 844
Query: 226 GDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTI 285
G+ + ++ G+ + + I IDG K+G LF ME+ C S QT
Sbjct: 845 GEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTY 904
Query: 286 TTLIHG 291
+ LI G
Sbjct: 905 SLLIEG 910
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 7/180 (3%)
Query: 188 FCTQKEMKEARSVFVKLLSRFA-----PNNKTMNILLLGFKESGDV-TAMEMFYHEMVLR 241
C M E +V V+LL + PN K+ L+LG E G++ A ++F H
Sbjct: 732 LCAMSNMMEFDTV-VELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNE 790
Query: 242 GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQA 301
G PS + +N + CK +A ++ ++M V LP L++ LI G +
Sbjct: 791 GISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERG 850
Query: 302 RQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFG 361
+F + + D A+ +I + + + A EL + ME+ + TY + G
Sbjct: 851 TSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 183/408 (44%), Gaps = 26/408 (6%)
Query: 93 TLQHP--HFTPTPDAFEKTLHILARMRYFDQ-----AWELMSHVQRTH--PSLLTLKSMS 143
+L HP H +P P K L +A Y + A ++ + R P+LLT ++
Sbjct: 117 SLLHPNLHLSPPPS---KALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLL 173
Query: 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVK 203
I L R S E FD M + +G+ + FNVL+ +C + ++++A + +
Sbjct: 174 IGLVRYPSSFSISSAREVFDDM---VKIGVS-LNVQTFNVLVNGYCLEGKLEDALGMLER 229
Query: 204 LLSRFA--PNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261
++S F P+N T N +L + G ++ ++ +M G P+ VTYN + GYCK G
Sbjct: 230 MVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLG 289
Query: 262 CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYN 321
+A ++ E M++ LP L T LI+G ++ + +L D M L+PD+ YN
Sbjct: 290 SLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYN 349
Query: 322 AMISSLIRCRDLNAAME---LMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRM 378
+I C +L ++E LM++ME + + VT++ L K E V + +
Sbjct: 350 TLIDG---CFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKEL 406
Query: 379 IE-GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGR 437
++ F P T L+K + + L + + +G + L+ ++ LC +
Sbjct: 407 VDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERK 466
Query: 438 WEEAFECSKQMLVRRRQVSEASY-RMLQRYLVQANANEKLEDLDRMIK 484
+EA R V E +Y ++ + + + LE D M K
Sbjct: 467 LDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKK 514
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 123/320 (38%), Gaps = 38/320 (11%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESG------------- 226
+N+L+ C M+E + + S + P+ T N L+ G E G
Sbjct: 313 YNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQME 372
Query: 227 -DVTAMEMFYHEMVLR----------------------GFRPSVVTYNIRIDGYCKKGCF 263
D H + L+ GF P +VTY+ I Y K G
Sbjct: 373 NDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDL 432
Query: 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323
A+ + EM + + T+ T++ R + +A L + KR D Y +
Sbjct: 433 SGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTL 492
Query: 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383
I R + A+E+ DEM++ +I T++++ GL E + +D + E
Sbjct: 493 IMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGL 552
Query: 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE 443
+P T ++ +C RV+ + I F P + ++L+ GLC G E+A
Sbjct: 553 LPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALN 612
Query: 444 CSKQMLVRRRQVSEASYRML 463
L+ R+V +Y +
Sbjct: 613 FF-NTLIEEREVDTVTYNTM 631
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 123/313 (39%), Gaps = 49/313 (15%)
Query: 164 RMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGF 222
M RE+ K + N +L A C ++++ EA ++ R F + T L++GF
Sbjct: 437 EMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGF 496
Query: 223 -KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS 281
+E A+EM + EM P+V T+N I G C G AM F+E+ LP
Sbjct: 497 FREEKVEKALEM-WDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPD 555
Query: 282 LQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPD------------------------- 316
T ++I G + +A + ++E K + KPD
Sbjct: 556 DSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFN 615
Query: 317 ---------IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG 367
YN MIS+ + + L A +L+ EMEEK + D TY++ LM+
Sbjct: 616 TLIEEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGK 675
Query: 368 LEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDL 427
L +L + GKF R + +V+ N A
Sbjct: 676 LSETDELLKK-FSGKFGSMKR-----------DLQVETEKNPATSESKEELNTEAIAYSD 723
Query: 428 LVTGLCSRGRWEE 440
++ LCSRGR +E
Sbjct: 724 VIDELCSRGRLKE 736
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 119 bits (298), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 167/359 (46%), Gaps = 8/359 (2%)
Query: 119 FDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS 178
F + L+ ++ + S + ++++ + QS ++ F+ M FV GS
Sbjct: 74 FFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVP----GS 129
Query: 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEM 238
FN LL + S F + S+ + + IL+ G E+G++ E+
Sbjct: 130 NCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIEL 189
Query: 239 VLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN- 297
GF P+VV Y IDG CKKG A LF EM ++ + + +T T LI+G L +N
Sbjct: 190 TEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLING--LFKNG 247
Query: 298 -IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYH 356
Q +++++M + + P++ YN +++ L + A ++ DEM E+ + + VTY+
Sbjct: 248 VKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYN 307
Query: 357 TMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR 416
T+ GL + L K+ D+M P T L+ FC ++ L+L L R
Sbjct: 308 TLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSR 367
Query: 417 GFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEK 475
G P ++LV+G C +G A + K+M R + S+ +Y +L +++ EK
Sbjct: 368 GLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEK 426
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/426 (22%), Positives = 179/426 (42%), Gaps = 51/426 (11%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEET 158
F P + F L + F+Q W + + +L + S I++ + E++
Sbjct: 125 FVPGSNCFNYLLTFVVGSSSFNQWWSFFN--ENKSKVVLDVYSFGILIKGCCEAGEIEKS 182
Query: 159 LEAFDRMEREIFVGIRKFGSEE----FNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNK 213
+ + + + +FG + L+ C + E+++A+ +F ++ N +
Sbjct: 183 FD--------LLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANER 234
Query: 214 TMNILLLG-FKESGDVTAMEMF----------------------------------YHEM 238
T +L+ G FK EM+ + EM
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEM 294
Query: 239 VLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNI 298
RG ++VTYN I G C++ +A ++ ++M+ P+L T TLI G V +
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKL 354
Query: 299 HQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTM 358
+A L ++ R L P + YN ++S R D + A +++ EMEE+ I VTY +
Sbjct: 355 GKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTIL 414
Query: 359 FFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418
+S +E +L M E VP T +L+ FC+ +++ L+ ++++
Sbjct: 415 IDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNC 474
Query: 419 CPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLED 478
P+ + ++ G C G A + K+M + + ASYR + L + +++ E
Sbjct: 475 EPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAER 534
Query: 479 L-DRMI 483
L ++MI
Sbjct: 535 LVEKMI 540
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 114/216 (52%), Gaps = 5/216 (2%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
+N L+ FC ++ +A S+ L SR +P+ T NIL+ GF GD + EM
Sbjct: 341 YNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEME 400
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
RG +PS VTY I ID + + A++L ME + +P + T + LIHG + ++
Sbjct: 401 ERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMN 460
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA--AMELMDEMEEKRIGHDNVTYHT 357
+A +LF M ++N +P+ YN MI L C++ ++ A++L+ EMEEK + + +Y
Sbjct: 461 EASRLFKSMVEKNCEPNEVIYNTMI--LGYCKEGSSYRALKLLKEMEEKELAPNVASYRY 518
Query: 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVML 393
M L K + +L ++MI+ P T + ++
Sbjct: 519 MIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLI 554
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 119 bits (297), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 138/305 (45%), Gaps = 5/305 (1%)
Query: 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKL 204
++ + K++ ++ L F ME + GIR ++ L+ C+ +A + +
Sbjct: 191 IIDSLCKYRHVDDALNLFKEMETK---GIRP-NVVTYSSLISCLCSYGRWSDASQLLSDM 246
Query: 205 L-SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263
+ + PN T N L+ F + G E + +M+ R P + TYN I+G+C
Sbjct: 247 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRL 306
Query: 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323
A ++FE M C P L T TLI G + + +LF EM R L D Y +
Sbjct: 307 DKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 366
Query: 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383
I L D + A ++ +M + D +TY + GL + LE +++D M + +
Sbjct: 367 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 426
Query: 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE 443
+++ C +VD G +L+ L +G P+ + +++GLCS+ +EA+
Sbjct: 427 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA 486
Query: 444 CSKQM 448
K+M
Sbjct: 487 LLKKM 491
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/370 (24%), Positives = 163/370 (44%), Gaps = 16/370 (4%)
Query: 101 PTPDAFE--KTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEET 158
P P FE K L +A+M+ FD L +QR S L + +I+++ +
Sbjct: 6 PLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISH-NLYTYNILINCFCRRSQISLA 64
Query: 159 LEAFDRMEREIFVGIRKFGSE----EFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNK 213
L +M K G E + LL +C K + +A ++ +++ + P+
Sbjct: 65 LALLGKM--------MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 116
Query: 214 TMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273
T L+ G + MV RG +P++VTY + ++G CK+G A L +M
Sbjct: 117 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 176
Query: 274 ERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDL 333
E + T+I R++ A LF EM + ++P++ Y+++IS L
Sbjct: 177 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 236
Query: 334 NAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVML 393
+ A +L+ +M EK+I + VT++ + +K KL+D MI+ P T L
Sbjct: 237 SDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSL 296
Query: 394 MKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRR 453
+ FC++ R+D ++ +++ + P + L+ G C R E+ E ++M R
Sbjct: 297 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 356
Query: 454 QVSEASYRML 463
+Y L
Sbjct: 357 VGDTVTYTTL 366
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 135/307 (43%), Gaps = 37/307 (12%)
Query: 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNN-KTMNILLLGFKESGDVTAMEMFYHEM 238
EFN LL A K+ S+ K+ +N T NIL+ F ++ +M
Sbjct: 12 EFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKM 71
Query: 239 VLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNI 298
+ G+ PS+VT + ++GYC DA+ L ++M + P T TTLIHG L
Sbjct: 72 MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 131
Query: 299 HQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTM 358
+A L D M +R +P++ Y +++ L + D++ A L+++ME +I D V ++T+
Sbjct: 132 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTI 191
Query: 359 FFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418
++ +CK VD LNL+ + +G
Sbjct: 192 ---------IDSLCKYR--------------------------HVDDALNLFKEMETKGI 216
Query: 419 CPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLED 478
P+ L++ LCS GRW +A + M+ ++ + ++ L V+ + E
Sbjct: 217 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 276
Query: 479 L-DRMIK 484
L D MIK
Sbjct: 277 LHDDMIK 283
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 140/336 (41%), Gaps = 32/336 (9%)
Query: 86 ALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHV--QRTHPSLLTLKSMS 143
AL FK ++ P + + L + A +L+S + ++ +P+L+T ++
Sbjct: 204 ALNLFK-EMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 262
Query: 144 IMLSRISKFQ-------------------SYEETLEAF---DRMER-----EIFVGIRKF 176
+ KF +Y + F DR+++ E V F
Sbjct: 263 DAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF 322
Query: 177 GS-EEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMF 234
+ +N L++ FC K +++ +F ++ R + T L+ G GD +
Sbjct: 323 PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 382
Query: 235 YHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGL 294
+ +MV G P ++TY+I +DG C G A+ +F+ M++ + TT+I G
Sbjct: 383 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 442
Query: 295 VRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVT 354
+ LF + + +KP++ YN MIS L R L A L+ +M+E D+ T
Sbjct: 443 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGT 502
Query: 355 YHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTV 390
Y+T+ ++ +L M +FV T+
Sbjct: 503 YNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI 538
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 70/155 (45%)
Query: 315 PDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKL 374
P I +N ++S++ + + + + L ++M+ I H+ TY+ + + S + L
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 375 YDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS 434
+M++ + P T+ L+ +C R+ + L +++ G+ P L+ GL
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 435 RGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQ 469
+ EA +M+ R Q + +Y ++ L +
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCK 162
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 119 bits (297), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 171/390 (43%), Gaps = 15/390 (3%)
Query: 86 ALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145
A++ F ++ F P+ F K L +A+M F+ L +Q S L + SI
Sbjct: 67 AVDLFGDMVKSRPF-PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISH-DLYTYSIF 124
Query: 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE----EFNVLLQAFCTQKEMKEARSVF 201
++ + L +M K G E + LL +C K + +A ++
Sbjct: 125 INCFCRRSQLSLALAVLAKM--------MKLGYEPDIVTLSSLLNGYCHSKRISDAVALV 176
Query: 202 VKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK 260
+++ + P+ T L+ G + +MV RG +P +VTY ++G CK+
Sbjct: 177 DQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKR 236
Query: 261 GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAY 320
G A+ L ++ME+ + T+I G +++ A LF EM + ++PD+ Y
Sbjct: 237 GDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTY 296
Query: 321 NAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380
+++IS L + A L+ +M E++I + VT+ + +K L KLYD MI+
Sbjct: 297 SSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK 356
Query: 381 GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEE 440
P T L+ FC++ R+D +++ +I + P+ L+ G C R EE
Sbjct: 357 RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEE 416
Query: 441 AFECSKQMLVRRRQVSEASYRMLQRYLVQA 470
E ++M R + +Y L QA
Sbjct: 417 GMELFREMSQRGLVGNTVTYTTLIHGFFQA 446
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 141/305 (46%), Gaps = 5/305 (1%)
Query: 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKL 204
++ + K++ ++ L F M+ + GIR ++ L+ C +A + +
Sbjct: 264 IIDGLCKYKHMDDALNLFTEMDNK---GIRP-DVFTYSSLISCLCNYGRWSDASRLLSDM 319
Query: 205 LSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263
+ R PN T + L+ F + G + E Y EM+ R P + TY+ I+G+C
Sbjct: 320 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 379
Query: 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323
+A +FE M C P++ T +TLI G + + + +LF EM +R L + Y +
Sbjct: 380 DEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTL 439
Query: 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383
I + RD + A + +M + + +TY+ + GL K+ L +++ +
Sbjct: 440 IHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTM 499
Query: 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE 443
P T ++++ C +V+ G L+ L +G P+ A + +++G C +G EEA
Sbjct: 500 EPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADS 559
Query: 444 CSKQM 448
K+M
Sbjct: 560 LLKKM 564
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 144/323 (44%), Gaps = 6/323 (1%)
Query: 120 DQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE 179
D A +L + ++ P ++ + +LS ++K +E + ++M+ +GI
Sbjct: 65 DDAVDLFGDMVKSRP-FPSIVEFNKLLSAVAKMNKFELVISLGEQMQT---LGISH-DLY 119
Query: 180 EFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEM 238
+++ + FC + ++ A +V K++ + P+ T++ LL G+ S ++ +M
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179
Query: 239 VLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNI 298
V G++P T+ I G +A+ L ++M + C P L T T+++G +I
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDI 239
Query: 299 HQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTM 358
A L +M K ++ D+ YN +I L + + ++ A+ L EM+ K I D TY ++
Sbjct: 240 DLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSL 299
Query: 359 FFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418
L +L MIE K P T L+ F ++ L+ +I R
Sbjct: 300 ISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 359
Query: 419 CPHGHALDLLVTGLCSRGRWEEA 441
P L+ G C R +EA
Sbjct: 360 DPDIFTYSSLINGFCMHDRLDEA 382
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 135/298 (45%), Gaps = 23/298 (7%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT-HPSLLTLKSMSIMLSRISKFQSYEE 157
F+ DAF K ++ + +D+ ++R+ P + T S+ I+ F ++
Sbjct: 331 FSALIDAFVKEGKLVEAEKLYDEM------IKRSIDPDIFTYSSL------INGFCMHDR 378
Query: 158 TLEA---FDRM-EREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNN 212
EA F+ M ++ F + + + L++ FC K ++E +F ++ R N
Sbjct: 379 LDEAKHMFELMISKDCFPNVVTYST-----LIKGFCKAKRVEEGMELFREMSQRGLVGNT 433
Query: 213 KTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEE 272
T L+ GF ++ D +M + +MV G P+++TYNI +DG CK G AM +FE
Sbjct: 434 VTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEY 493
Query: 273 MERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRD 332
++R P + T +I G + +LF + + + P++ AYN MIS R
Sbjct: 494 LQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGS 553
Query: 333 LNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTV 390
A L+ +M+E ++ TY+T+ ++ E +L M F T+
Sbjct: 554 KEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI 611
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 69/163 (42%)
Query: 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHT 357
+ A LF +M K P I +N ++S++ + + L ++M+ I HD TY
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123
Query: 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRG 417
+ S L + +M++ + P T+ L+ +C + R+ + L +++ G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183
Query: 418 FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASY 460
+ P L+ GL + EA QM+ R Q +Y
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTY 226
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 119 bits (297), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 151/338 (44%), Gaps = 12/338 (3%)
Query: 119 FDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS 178
F+ A+ L + + P L ++ + +L+ + + YE + +ME GI
Sbjct: 52 FEDAFALFFEMVHSQP-LPSIVDFTRLLTATANLRRYETVIYFSQKME---LYGISH-DL 106
Query: 179 EEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGF---KESGDVTAMEMF 234
F +L+ FC + A SV K++ + P+ T LL GF GD ++ +
Sbjct: 107 YSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVIL 166
Query: 235 YHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGL 294
MV G+ P+VV YN IDG CK G A+ L EME+ + T TL+ G
Sbjct: 167 ---MVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCY 223
Query: 295 VRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVT 354
A ++ +M KR++ PD+ + A+I ++ +L+ A EL EM + + +NVT
Sbjct: 224 SGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVT 283
Query: 355 YHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLI 414
Y+++ GL L K +D M P T L+ FC VD G+ L+ +
Sbjct: 284 YNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMS 343
Query: 415 DRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRR 452
GF + L+ G C G+ A + M+ RR
Sbjct: 344 CEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRR 381
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 95/424 (22%), Positives = 179/424 (42%), Gaps = 31/424 (7%)
Query: 92 FTLQHPHFTPTPDAFEKTLHILARMR------YFDQAWEL--MSHVQRTHPSLL----TL 139
F + H P+ F + L A +R YF Q EL +SH + L+
Sbjct: 60 FEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRC 119
Query: 140 KSMSIMLSRISKFQ--SYEETLEAFDRMER------------EIFVGIRKFGSEE----F 181
+S LS + K YE ++ F + + + + K G E +
Sbjct: 120 SRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVY 179
Query: 182 NVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240
N L+ C E+ A + ++ + + T N LL G SG + +M+
Sbjct: 180 NTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMK 239
Query: 241 RGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQ 300
R P VVT+ ID + K+G +A L++EM + + P+ T ++I+G + ++
Sbjct: 240 RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYD 299
Query: 301 ARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFF 360
A++ FD M + P++ YN +IS + R ++ M+L M + D TY+T+
Sbjct: 300 AKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIH 359
Query: 361 GLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420
G + L ++ M+ + P T +L+ CVN ++ L + + +
Sbjct: 360 GYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYI 419
Query: 421 HGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLD 480
A ++++ GLC + E+A+E ++ V + +Y ++ L + + ++L
Sbjct: 420 GIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELI 479
Query: 481 RMIK 484
R +K
Sbjct: 480 RRMK 483
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 1/169 (0%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKL-LSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
+N L+ FC + + E +F ++ F + T N L+ G+ + G + + MV
Sbjct: 319 YNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMV 378
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
R P ++T+ I + G C G A+ F++M + +IHG +
Sbjct: 379 SRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVE 438
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRI 348
+A +LF +P +KPD Y MI L + A EL+ M+E+ I
Sbjct: 439 KAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGI 487
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 1/224 (0%)
Query: 263 FGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNA 322
F DA LF EM LPS+ T L+ +R +M + D+ ++
Sbjct: 52 FEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTI 111
Query: 323 MISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK 382
+I RC L+ A+ ++ +M + VT+ ++ G + + L M++
Sbjct: 112 LIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSG 171
Query: 383 FVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAF 442
+ P L+ C N +++ L L + +G + L+TGLC GRW +A
Sbjct: 172 YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAA 231
Query: 443 ECSKQMLVRRRQVSEASYR-MLQRYLVQANANEKLEDLDRMIKN 485
+ M+ R ++ ++ ++ Q N +E E MI++
Sbjct: 232 RMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQS 275
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 103/410 (25%), Positives = 186/410 (45%), Gaps = 23/410 (5%)
Query: 82 NGLKALEFFK----FT-LQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTH-PS 135
NGL L+F FT + H P+ F + L ++A+M +D L +Q P
Sbjct: 57 NGLHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPP 116
Query: 136 LLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG-IRKFGSE----EFNVLLQAFCT 190
LL ++ + +S F+G + K G E F LL +C
Sbjct: 117 LLCTCNIVMHCVCLSS-----------QPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCH 165
Query: 191 QKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVT 249
+++A ++F ++L F PN T L+ ++ + +++M G RP+VVT
Sbjct: 166 WNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVT 225
Query: 250 YNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMP 309
YN + G C+ G +GDA L +M + P++ T T LI V + +A++L++ M
Sbjct: 226 YNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMI 285
Query: 310 KRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLE 369
+ ++ PD+ Y ++I+ L L+ A ++ ME + V Y T+ G KS +E
Sbjct: 286 QMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVE 345
Query: 370 GVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLV 429
K++ M + V T T +L++ +C+ R D+ ++ + R P ++L+
Sbjct: 346 DGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLL 405
Query: 430 TGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDL 479
GLC G+ E+A + M R ++ +Y ++ + + + E DL
Sbjct: 406 DGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDL 455
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 119/269 (44%), Gaps = 1/269 (0%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
+N L+ C +A + ++ R PN T L+ F + G + + Y+ M+
Sbjct: 226 YNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMI 285
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
P V TY I+G C G +A ++F MER C P+ TTLIHG + +
Sbjct: 286 QMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVE 345
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF 359
++F EM ++ + + Y +I + A E+ ++M +R D TY+ +
Sbjct: 346 DGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLL 405
Query: 360 FGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFC 419
GL + +E +++ M + + T ++++ C +V+ +L+ L +G
Sbjct: 406 DGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMK 465
Query: 420 PHGHALDLLVTGLCSRGRWEEAFECSKQM 448
P+ +++G C RG EA K+M
Sbjct: 466 PNVITYTTMISGFCRRGLIHEADSLFKKM 494
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 141/326 (43%), Gaps = 10/326 (3%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHV--QRTHPSLLTLKSMSIMLSRISKFQSYE 156
F P + + L + R+ + A EL + + + P+++T ++ L I ++
Sbjct: 184 FKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAA 243
Query: 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVF-VKLLSRFAPNNKTM 215
L D M+R I + F + L+ AF ++ EA+ ++ V + P+ T
Sbjct: 244 WLLR--DMMKRRIEPNVITFTA-----LIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTY 296
Query: 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275
L+ G G + ++ M G P+ V Y I G+CK D M++F EM +
Sbjct: 297 GSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQ 356
Query: 276 VACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA 335
+ + T T LI G LV A+++F++M R PDI YN ++ L +
Sbjct: 357 KGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEK 416
Query: 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMK 395
A+ + + M ++ + + VTY + G+ K +E L+ + P T ++
Sbjct: 417 ALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMIS 476
Query: 396 FFCVNFRVDLGLNLWGYLIDRGFCPH 421
FC + +L+ + + GF P+
Sbjct: 477 GFCRRGLIHEADSLFKKMKEDGFLPN 502
Score = 35.8 bits (81), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 139 LKSMSIMLSRISKFQSYEETLEAFDRM-EREIFVGIRKFGSEEFNVLLQAFCTQKEMKEA 197
+++ +++L + E+ L F+ M +RE+ + I + +++Q C ++++A
Sbjct: 398 IRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINI-----VTYTIIIQGMCKLGKVEDA 452
Query: 198 RSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY 250
+F L S+ PN T ++ GF G + + + +M GF P+ Y
Sbjct: 453 FDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 172/390 (44%), Gaps = 15/390 (3%)
Query: 86 ALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145
A++ F ++ F P+ F K L +A+M F+ L +Q S L + SI
Sbjct: 67 AVDLFGDMVKSRPF-PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISH-DLYTYSIF 124
Query: 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE----EFNVLLQAFCTQKEMKEARSVF 201
++ + L +M K G E + LL +C K + +A ++
Sbjct: 125 INCFCRRSQLSLALAVLAKM--------MKLGYEPDIVTLSSLLNGYCHSKRISDAVALV 176
Query: 202 VKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK 260
+++ + P+ T L+ G + +MV RG +P +VTY ++G CK+
Sbjct: 177 DQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKR 236
Query: 261 GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAY 320
G A+ L +ME ++ T+I R++ A LF EM + ++P++ Y
Sbjct: 237 GDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTY 296
Query: 321 NAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380
N++I+ L + A L+ M EK+I + VT++ + K L KL++ MI+
Sbjct: 297 NSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQ 356
Query: 381 GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEE 440
P T T +L+ FC++ R+D ++ +++ + P+ + L+ G C R E+
Sbjct: 357 RSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVED 416
Query: 441 AFECSKQMLVRRRQVSEASYRMLQRYLVQA 470
E ++M R + +Y + + QA
Sbjct: 417 GVELFREMSQRGLVGNTVTYTTIIQGFFQA 446
Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 147/338 (43%), Gaps = 16/338 (4%)
Query: 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKL 204
++ + K++ E ++ F ME + GIR +N L+ C +A + +
Sbjct: 264 IIDSLCKYRHVEVAVDLFTEMETK---GIRP-NVVTYNSLINCLCNYGRWSDASRLLSNM 319
Query: 205 L-SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263
L + PN T N L+ F + G + E + EM+ R P +TYN+ I+G+C
Sbjct: 320 LEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRL 379
Query: 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323
+A ++F+ M CLP++QT TLI+G + + +LF EM +R L + Y +
Sbjct: 380 DEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTI 439
Query: 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383
I + D ++A + +M R+ D +TY + GL L+ ++ + + +
Sbjct: 440 IQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEM 499
Query: 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE 443
+++ C +V W P + +++GLCS+ +EA +
Sbjct: 500 ELNIFIYNTMIEGMCKAGKVG---EAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADD 556
Query: 444 CSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDR 481
++M + +Y L++AN L D DR
Sbjct: 557 LFRKMKEDGTLPNSGTYNT----LIRAN----LRDCDR 586
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 4/216 (1%)
Query: 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHE 237
+ +N L+ FC K +++ +F ++ R N T ++ GF ++GD + +M + +
Sbjct: 399 QTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQ 458
Query: 238 MVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN 297
MV ++TY+I + G C G A+ +F+ +++ ++ T+I G
Sbjct: 459 MVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGK 518
Query: 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHT 357
+ +A LF + ++KPD+ YN MIS L R L A +L +M+E ++ TY+T
Sbjct: 519 VGEAWDLFCSL---SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNT 575
Query: 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVML 393
+ ++ +L M FV T+ ++
Sbjct: 576 LIRANLRDCDRAASAELIKEMRSSGFVGDASTISLV 611
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 8/220 (3%)
Query: 136 LLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMK 195
L +++ + +++ K + E+ +E F M + VG + + ++Q F +
Sbjct: 395 LPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVG----NTVTYTTIIQGFFQAGDCD 450
Query: 196 EARSVFVKLLSRFAPNN-KTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRI 254
A+ VF +++S P + T +ILL G G + + + + ++ YN I
Sbjct: 451 SAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMI 510
Query: 255 DGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLK 314
+G CK G G+A LF + + P + T T+I G R + +A LF +M +
Sbjct: 511 EGMCKAGKVGEAWDLFCSL---SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTL 567
Query: 315 PDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVT 354
P+ G YN +I + +R D A+ EL+ EM D T
Sbjct: 568 PNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDAST 607
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 77/188 (40%)
Query: 265 DAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMI 324
DA+ LF +M + PS+ L+ + L ++M + D+ Y+ I
Sbjct: 66 DAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFI 125
Query: 325 SSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFV 384
+ R L+ A+ ++ +M + D VT ++ G S + L D+M+E +
Sbjct: 126 NCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYK 185
Query: 385 PKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFEC 444
P T T L+ ++ + + L ++ RG P +V GLC RG + A
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNL 245
Query: 445 SKQMLVRR 452
+M R
Sbjct: 246 LNKMEAAR 253
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 69/163 (42%)
Query: 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHT 357
+ A LF +M K P I +N ++S++ + + L ++M+ I HD TY
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123
Query: 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRG 417
+ S L + +M++ + P T+ L+ +C + R+ + L +++ G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183
Query: 418 FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASY 460
+ P L+ GL + EA QM+ R Q +Y
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTY 226
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 156/357 (43%), Gaps = 5/357 (1%)
Query: 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKL 204
++ + K++ ++ L F ME + GIR ++ L+ C+ +A + +
Sbjct: 266 IIDSLCKYRHVDDALNLFKEMETK---GIRP-NVVTYSSLISCLCSYGRWSDASQLLSDM 321
Query: 205 L-SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263
+ + PN T N L+ F + G E Y +M+ R P + TYN ++G+C
Sbjct: 322 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRL 381
Query: 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323
A ++FE M C P + T TLI G + + +LF EM R L D Y +
Sbjct: 382 DKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 441
Query: 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383
I L D + A ++ +M + D +TY + GL + LE +++D M + +
Sbjct: 442 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 501
Query: 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE 443
+++ C +VD G +L+ L +G P+ + +++GLCS+ +EA+
Sbjct: 502 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA 561
Query: 444 CSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPPPTRQQVAQ 500
K+M + +Y L R ++ +L R +++ + V T VA
Sbjct: 562 LLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVAN 618
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/398 (23%), Positives = 175/398 (43%), Gaps = 17/398 (4%)
Query: 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLE 160
P+ F K L +A+M+ FD L +QR + L + +I+++ + L
Sbjct: 83 PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEI-VHGLYTYNILINCFCRRSQISLALA 141
Query: 161 AFDRMEREIFVGIRKFGSE----EFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTM 215
+M K G E + LL +C K + +A ++ +++ + P+ T
Sbjct: 142 LLGKM--------MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITF 193
Query: 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275
L+ G + MV RG +P++VTY + ++G CK+G A+ L +ME
Sbjct: 194 TTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEA 253
Query: 276 VACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA 335
+ T+I R++ A LF EM + ++P++ Y+++IS L +
Sbjct: 254 AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSD 313
Query: 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMK 395
A +L+ +M EK+I + VT++ + +K KLYD MI+ P T L+
Sbjct: 314 ASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVN 373
Query: 396 FFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQV 455
FC++ R+D ++ +++ + P + L+ G C R E+ E ++M R
Sbjct: 374 GFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 433
Query: 456 SEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPPP 493
+Y L + L + ++ ++ K + + PP
Sbjct: 434 DTVTYTTLIQGLFH---DGDCDNAQKVFKQMVSDGVPP 468
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 151/352 (42%), Gaps = 11/352 (3%)
Query: 47 DQPLHPTLLQHLPQTTPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAF 106
D L LL + + ++ N + + + AL FK ++ P +
Sbjct: 240 DTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFK-EMETKGIRPNVVTY 298
Query: 107 EKTLHILARMRYFDQAWELMSHV--QRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDR 164
+ L + A +L+S + ++ +P+L+T ++ + KF E+ + D
Sbjct: 299 SSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYD--DM 356
Query: 165 MEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFA-PNNKTMNILLLGFK 223
++R I I +N L+ FC + +A+ +F ++S+ P+ T N L+ GF
Sbjct: 357 IKRSIDPDIF-----TYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFC 411
Query: 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQ 283
+S V + EM RG VTY I G G +A ++F++M P +
Sbjct: 412 KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIM 471
Query: 284 TITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEM 343
T + L+ G + +A ++FD M K +K DI Y MI + + ++ +L +
Sbjct: 472 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 531
Query: 344 EEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMK 395
K + + VTY+TM GL L+ L +M E +P + T L++
Sbjct: 532 SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIR 583
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 78/184 (42%)
Query: 265 DAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMI 324
DA+ LF M + LPS+ L+ ++ L ++M + + + YN +I
Sbjct: 68 DAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILI 127
Query: 325 SSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFV 384
+ R ++ A+ L+ +M + VT ++ G + L D+M+E +
Sbjct: 128 NCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYR 187
Query: 385 PKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFEC 444
P T T L+ ++ + + L ++ RG P+ ++V GLC RG + A
Sbjct: 188 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNL 247
Query: 445 SKQM 448
+M
Sbjct: 248 LNKM 251
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 82/186 (44%), Gaps = 1/186 (0%)
Query: 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHT 357
+ A LF M K P I +N ++S++ + + + + L ++M+ I H TY+
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 125
Query: 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRG 417
+ + S + L +M++ + P T+ L+ +C R+ + L +++ G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 418 FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQ-ANANEKL 476
+ P L+ GL + EA +M+ R Q + +Y ++ L + + + L
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245
Query: 477 EDLDRM 482
L++M
Sbjct: 246 NLLNKM 251
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 1/168 (0%)
Query: 318 GAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDR 377
G Y ++ + + L+ A+ L M + R V ++ + + K + V L ++
Sbjct: 51 GDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEK 110
Query: 378 MIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGR 437
M + V T +L+ FC ++ L L L G ++ G+ P L L+ G C R
Sbjct: 111 MQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKR 170
Query: 438 WEEAFECSKQMLVRRRQVSEASYRMLQRYLVQAN-ANEKLEDLDRMIK 484
+A QM+ + ++ L L N A+E + +DRM++
Sbjct: 171 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ 218
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 148/324 (45%), Gaps = 5/324 (1%)
Query: 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFV 202
S ++ + + + + F ME + GI K +N L++ C + + +
Sbjct: 232 STIIDSLCRDGCIDAAISLFKEMETK---GI-KSSVVTYNSLVRGLCKAGKWNDGALLLK 287
Query: 203 KLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261
++SR PN T N+LL F + G + Y EM+ RG P+++TYN +DGYC +
Sbjct: 288 DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQN 347
Query: 262 CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYN 321
+A + + M R C P + T T+LI G +V+ + ++F + KR L + Y+
Sbjct: 348 RLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 407
Query: 322 AMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381
++ + + A EL EM + D +TY + GL + LE ++++ + +
Sbjct: 408 ILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS 467
Query: 382 KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
K +++ C +V+ NL+ L +G P+ ++++GLC +G EA
Sbjct: 468 KMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEA 527
Query: 442 FECSKQMLVRRRQVSEASYRMLQR 465
++M ++ +Y L R
Sbjct: 528 NILLRKMEEDGNAPNDCTYNTLIR 551
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 8/320 (2%)
Query: 173 IRKFGSE----EFNVLLQAFCTQKEMKEARSVFVKLLSRFA-PNNKTMNILLLGFKESGD 227
+ K G E FN L++ + ++ EA + +++ P+ T N ++ G SGD
Sbjct: 149 VMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGD 208
Query: 228 VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITT 287
+ +M R + V TY+ ID C+ GC A+ LF+EME S+ T +
Sbjct: 209 TSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNS 268
Query: 288 LIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKR 347
L+ G + L +M R + P++ +N ++ ++ L A EL EM +
Sbjct: 269 LVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRG 328
Query: 348 IGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGL 407
I + +TY+T+ G + L + D M+ K P T L+K +C+ RVD G+
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 388
Query: 408 NLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYL 467
++ + RG + +LV G C G+ + A E ++M+ +Y +L L
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448
Query: 468 VQANANEKLEDLDRMIKNLQ 487
N KLE + ++LQ
Sbjct: 449 CD---NGKLEKALEIFEDLQ 465
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 104/215 (48%), Gaps = 1/215 (0%)
Query: 181 FNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239
F L++ +C K + + VF + R N T +IL+ GF +SG + E + EMV
Sbjct: 371 FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 430
Query: 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIH 299
G P V+TY I +DG C G A+ +FE++++ + TT+I G +
Sbjct: 431 SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVE 490
Query: 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF 359
A LF +P + +KP++ Y MIS L + L+ A L+ +MEE ++ TY+T+
Sbjct: 491 DAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLI 550
Query: 360 FGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLM 394
++ L KL + M F ++ M++
Sbjct: 551 RAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVI 585
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 121/264 (45%), Gaps = 12/264 (4%)
Query: 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHE 237
+++FN++L FC Q E L+ A N T+NI++ F +
Sbjct: 101 TKQFNLVLD-FCKQLE-----------LNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGK 148
Query: 238 MVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN 297
++ G+ P T+N I G +G +A+ L + M C P + T ++++G +
Sbjct: 149 VMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGD 208
Query: 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHT 357
A L +M +RN+K D+ Y+ +I SL R ++AA+ L EME K I VTY++
Sbjct: 209 TSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNS 268
Query: 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRG 417
+ GL K+ L M+ + VP T +L+ F ++ L+ +I RG
Sbjct: 269 LVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRG 328
Query: 418 FCPHGHALDLLVTGLCSRGRWEEA 441
P+ + L+ G C + R EA
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEA 352
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 120/255 (47%), Gaps = 5/255 (1%)
Query: 234 FYHEMVLRGFRPSVVTYNIRIDGYCK--KGCFGDAMRLFEEMERVACLPSLQTITTLIHG 291
F ++ L G ++ T NI I+ +C+ K CF A + ++ ++ P T TLI G
Sbjct: 110 FCKQLELNGIAHNIYTLNIMINCFCRCCKTCF--AYSVLGKVMKLGYEPDTTTFNTLIKG 167
Query: 292 AGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHD 351
L + +A L D M + +PD+ YN++++ + R D + A++L+ +MEE+ + D
Sbjct: 168 LFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKAD 227
Query: 352 NVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWG 411
TY T+ L + ++ L+ M T L++ C + + G L
Sbjct: 228 VFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLK 287
Query: 412 YLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYR-MLQRYLVQA 470
++ R P+ ++L+ G+ +EA E K+M+ R + +Y ++ Y +Q
Sbjct: 288 DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQN 347
Query: 471 NANEKLEDLDRMIKN 485
+E LD M++N
Sbjct: 348 RLSEANNMLDLMVRN 362
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 81/206 (39%)
Query: 265 DAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMI 324
DA+ LF+EM R LPSL + + + ++ + +I N MI
Sbjct: 71 DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 130
Query: 325 SSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFV 384
+ RC A ++ ++ + D T++T+ GL + L DRM+E
Sbjct: 131 NCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQ 190
Query: 385 PKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFEC 444
P T ++ C + L L+L + +R ++ LC G + A
Sbjct: 191 PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 250
Query: 445 SKQMLVRRRQVSEASYRMLQRYLVQA 470
K+M + + S +Y L R L +A
Sbjct: 251 FKEMETKGIKSSVVTYNSLVRGLCKA 276
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 40/201 (19%)
Query: 168 EIFVGIRKFG----SEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNKTMNILLLGF 222
++F I K G + +++L+Q FC ++K A +F +++S P+ T ILL G
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448
Query: 223 KESGDV-TAMEMF----------------------------------YHEMVLRGFRPSV 247
++G + A+E+F + + +G +P+V
Sbjct: 449 CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 508
Query: 248 VTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDE 307
+TY + I G CKKG +A L +ME P+ T TLI ++ + +L +E
Sbjct: 509 MTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEE 568
Query: 308 MPKRNLKPDIGAYNAMISSLI 328
M D + +I L+
Sbjct: 569 MKSCGFSADASSIKMVIDMLL 589
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 101/402 (25%), Positives = 176/402 (43%), Gaps = 18/402 (4%)
Query: 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT--HPSLLTLKSMSIMLSRISKFQSYE 156
F P+ + + L + R D L+ ++ P++ T +L R K
Sbjct: 219 FRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKIN--- 275
Query: 157 ETLEAFDRMEREIFVGIRKFGSE--EFNVLLQAFCTQKEMKEARSVFVKL-LSRFAPNNK 213
E E RM+ E G + + VL+ A CT +++ A+ VF K+ R P+
Sbjct: 276 EAYEILKRMDDE------GCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRV 329
Query: 214 TMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273
T LL F ++ D+ +++ F+ EM G P VVT+ I +D CK G FG+A + M
Sbjct: 330 TYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVM 389
Query: 274 ERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDL 333
LP+L T TLI G V + A +LF M +KP Y I + D
Sbjct: 390 RDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDS 449
Query: 334 NAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVML 393
+A+E ++M+ K I + V + + L K+ +++ + + VP + T M+
Sbjct: 450 VSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMM 509
Query: 394 MKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRR 453
MK + +D + L +++ G P ++ L+ L R +EA++ +M +
Sbjct: 510 MKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKL 569
Query: 454 QVSEASYRMLQRYLVQANANEKLEDLDRMIKNL-QAVLPPPT 494
+ + +Y L L N K+++ + + + Q PP T
Sbjct: 570 KPTVVTYNTL---LAGLGKNGKIQEAIELFEGMVQKGCPPNT 608
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 128/292 (43%), Gaps = 7/292 (2%)
Query: 166 EREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFA--PNNKTMNILLLGFK 223
ER + GI + G +++ C + AR++F K P T N+L+ G
Sbjct: 737 ERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLL 796
Query: 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQ 283
E+ + + + ++ G P V TYN +D Y K G + L++EM C
Sbjct: 797 EADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHEC--EAN 854
Query: 284 TITTLIHGAGLVR--NIHQARQL-FDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELM 340
TIT I +GLV+ N+ A L +D M R+ P Y +I L + L A +L
Sbjct: 855 TITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLF 914
Query: 341 DEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVN 400
+ M + + Y+ + G K+ + C L+ RM++ P +T +L+ C+
Sbjct: 915 EGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMV 974
Query: 401 FRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRR 452
RVD GL+ + L + G P +L++ GL R EEA +M R
Sbjct: 975 GRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSR 1026
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 137/306 (44%), Gaps = 7/306 (2%)
Query: 165 MEREIFVGIRKFGS----EEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILL 219
+ +++F+ ++ G +N LL A+ ++ E ++ ++ + N T NI++
Sbjct: 803 IAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVI 862
Query: 220 LGFKESGDVT-AMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVAC 278
G ++G+V A++++Y M R F P+ TY IDG K G +A +LFE M C
Sbjct: 863 SGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGC 922
Query: 279 LPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAME 338
P+ LI+G G A LF M K ++PD+ Y+ ++ L ++ +
Sbjct: 923 RPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLH 982
Query: 339 LMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFV-PKTRTVVMLMKFF 397
E++E + D V Y+ + GL KS LE L++ M + + P T L+
Sbjct: 983 YFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNL 1042
Query: 398 CVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSE 457
+ V+ ++ + G P+ + L+ G G+ E A+ + M+ +
Sbjct: 1043 GIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNT 1102
Query: 458 ASYRML 463
+Y L
Sbjct: 1103 GTYEQL 1108
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 152/329 (46%), Gaps = 12/329 (3%)
Query: 117 RYFDQAWELMSHVQRTH--PSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIR 174
R D + S +++ P ++T +I++ + K ++ E + D M + GI
Sbjct: 342 RDLDSVKQFWSEMEKDGHVPDVVTF---TILVDALCKAGNFGEAFDTLDVMRDQ---GIL 395
Query: 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGD-VTAME 232
+N L+ + +A +F + S P T + + + +SGD V+A+E
Sbjct: 396 P-NLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALE 454
Query: 233 MFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGA 292
F +M +G P++V N + K G +A ++F ++ + +P T ++
Sbjct: 455 TF-EKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCY 513
Query: 293 GLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDN 352
V I +A +L EM + +PD+ N++I++L + ++ A ++ M+E ++
Sbjct: 514 SKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTV 573
Query: 353 VTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGY 412
VTY+T+ GL K+ ++ +L++ M++ P T T L C N V L L +
Sbjct: 574 VTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFK 633
Query: 413 LIDRGFCPHGHALDLLVTGLCSRGRWEEA 441
++D G P + ++ GL G+ +EA
Sbjct: 634 MMDMGCVPDVFTYNTIIFGLVKNGQVKEA 662
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 138/320 (43%), Gaps = 8/320 (2%)
Query: 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE---SGDVTAMEMF 234
+E N +L+A +++E VF + R + N L FK G +
Sbjct: 118 TETCNYMLEALRVDGKLEEMAYVFDLMQKRII--KRDTNTYLTIFKSLSVKGGLKQAPYA 175
Query: 235 YHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGL 294
+M GF + +YN I K +AM ++ M PSLQT ++L+ G G
Sbjct: 176 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGK 235
Query: 295 VRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVT 354
R+I L EM LKP++ + I L R +N A E++ M+++ G D VT
Sbjct: 236 RRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVT 295
Query: 355 YHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLI 414
Y + L + L+ +++++M G+ P T + L+ F N +D W +
Sbjct: 296 YTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEME 355
Query: 415 DRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANE 474
G P +LV LC G + EAF+ M + + +Y L L++ +
Sbjct: 356 KDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVH--- 412
Query: 475 KLEDLDRMIKNLQAVLPPPT 494
+L+D + N++++ PT
Sbjct: 413 RLDDALELFGNMESLGVKPT 432
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 147/355 (41%), Gaps = 15/355 (4%)
Query: 98 HFTPTPDAFEKTLHILARMRYFDQAWELMSH--VQRTHPSLLTL-KSMSIMLSRISKFQS 154
H T T + + L + ++ ++LM ++R + LT+ KS+S+
Sbjct: 116 HTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVK-------GG 168
Query: 155 YEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVK-LLSRFAPNNK 213
++ A +M FV + +N L+ + EA V+ + +L F P+ +
Sbjct: 169 LKQAPYALRKMREFGFV----LNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQ 224
Query: 214 TMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273
T + L++G + D+ ++ EM G +P+V T+ I I + G +A + + M
Sbjct: 225 TYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRM 284
Query: 274 ERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDL 333
+ C P + T T LI R + A+++F++M KPD Y ++ RDL
Sbjct: 285 DDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDL 344
Query: 334 NAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVML 393
++ + EME+ D VT+ + L K+ D M + +P T L
Sbjct: 345 DSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTL 404
Query: 394 MKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448
+ R+D L L+G + G P + + + G A E ++M
Sbjct: 405 ICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKM 459
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/369 (19%), Positives = 156/369 (42%), Gaps = 29/369 (7%)
Query: 77 FAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTH--P 134
+ + + ALE F+ ++ P A +L+ LA+ +A ++ ++ P
Sbjct: 443 YGKSGDSVSALETFE-KMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVP 501
Query: 135 SLLTLKSMSIMLSRISKFQSYEETLEAFDRM-----EREIFVGIRKFGSEEFNVLLQAFC 189
+T ++M+ SK +E ++ M E ++ V N L+
Sbjct: 502 DSVTY---NMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIV---------VNSLINTLY 549
Query: 190 TQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVV 248
+ EA +F+++ + P T N LL G ++G + + MV +G P+ +
Sbjct: 550 KADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTI 609
Query: 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN--IHQARQLFD 306
T+N D CK A+++ +M + C+P + T T+I GLV+N + +A F
Sbjct: 610 TFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIF--GLVKNGQVKEAMCFFH 667
Query: 307 EMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGH-DNVTYHTMFFGLMKS 365
+M K+ + PD ++ +++ + A +++ N+ + + ++
Sbjct: 668 QM-KKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAE 726
Query: 366 SGLEGVCKLYDRMIEGKFVPKTRTVVM-LMKFFCVNFRVDLGLNLW-GYLIDRGFCPHGH 423
+G++ +R++ ++++ ++++ C + V L+ + D G P
Sbjct: 727 AGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLP 786
Query: 424 ALDLLVTGL 432
+LL+ GL
Sbjct: 787 TYNLLIGGL 795
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,146,665
Number of Sequences: 539616
Number of extensions: 6993553
Number of successful extensions: 28978
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 23282
Number of HSP's gapped (non-prelim): 2321
length of query: 500
length of database: 191,569,459
effective HSP length: 122
effective length of query: 378
effective length of database: 125,736,307
effective search space: 47528324046
effective search space used: 47528324046
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)