Query 041822
Match_columns 500
No_of_seqs 625 out of 2959
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 11:00:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.6E-62 5.6E-67 499.4 55.1 423 64-497 367-792 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.9E-62 1.3E-66 496.8 54.2 414 65-484 435-874 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 4.4E-59 9.5E-64 473.3 46.4 410 66-498 86-532 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.5E-57 3.3E-62 472.9 46.4 419 64-498 149-629 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 4.1E-56 8.9E-61 462.2 46.3 414 64-498 250-695 (857)
6 PLN03081 pentatricopeptide (PP 100.0 6.9E-56 1.5E-60 450.0 45.1 411 64-492 120-563 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.4E-26 1.2E-30 241.7 52.3 401 66-483 464-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-25 5.3E-30 236.7 52.0 401 68-486 432-832 (899)
9 PRK11447 cellulose synthase su 99.9 7.1E-20 1.5E-24 196.0 53.0 401 72-488 274-742 (1157)
10 PRK11788 tetratricopeptide rep 99.9 2.1E-21 4.5E-26 185.6 35.1 300 148-458 44-354 (389)
11 PRK11788 tetratricopeptide rep 99.9 1.3E-20 2.9E-25 180.0 37.3 298 184-487 41-348 (389)
12 KOG4626 O-linked N-acetylgluco 99.9 6.2E-20 1.3E-24 168.2 36.7 334 104-449 117-483 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 3E-18 6.4E-23 172.5 51.2 396 70-485 130-570 (615)
14 KOG4626 O-linked N-acetylgluco 99.9 5E-20 1.1E-24 168.7 34.4 349 67-432 116-500 (966)
15 PRK11447 cellulose synthase su 99.9 4.2E-18 9.2E-23 182.4 54.4 400 79-492 159-706 (1157)
16 PRK15174 Vi polysaccharide exp 99.9 8.3E-19 1.8E-23 175.8 45.9 362 73-449 48-418 (656)
17 PRK15174 Vi polysaccharide exp 99.9 5.3E-19 1.1E-23 177.3 43.9 333 104-451 43-381 (656)
18 PRK10049 pgaA outer membrane p 99.9 7.7E-18 1.7E-22 172.5 46.7 410 61-488 10-458 (765)
19 PRK10049 pgaA outer membrane p 99.8 7.4E-17 1.6E-21 165.3 43.2 383 65-464 47-467 (765)
20 PRK14574 hmsH outer membrane p 99.8 1.2E-15 2.6E-20 153.6 49.7 395 78-487 45-514 (822)
21 TIGR00990 3a0801s09 mitochondr 99.8 3.2E-16 6.9E-21 157.8 45.8 376 66-451 159-571 (615)
22 KOG4422 Uncharacterized conser 99.8 1.9E-15 4E-20 133.2 37.0 389 71-488 120-553 (625)
23 PRK14574 hmsH outer membrane p 99.8 2.8E-14 6.1E-19 143.9 46.5 384 62-460 64-520 (822)
24 PRK09782 bacteriophage N4 rece 99.8 1.4E-13 3E-18 141.8 51.1 457 2-486 66-706 (987)
25 KOG4422 Uncharacterized conser 99.7 2.9E-13 6.4E-18 119.6 39.0 338 138-485 206-589 (625)
26 KOG2002 TPR-containing nuclear 99.7 2.7E-13 5.7E-18 131.6 38.5 412 65-486 268-745 (1018)
27 PRK09782 bacteriophage N4 rece 99.7 1.4E-12 3E-17 134.6 43.8 381 74-478 320-732 (987)
28 KOG2002 TPR-containing nuclear 99.7 1.3E-12 2.7E-17 127.0 36.8 408 79-497 248-721 (1018)
29 KOG2076 RNA polymerase III tra 99.7 3.3E-12 7.2E-17 123.3 39.3 351 77-448 149-509 (895)
30 KOG2076 RNA polymerase III tra 99.7 4.3E-12 9.4E-17 122.5 38.5 413 65-486 171-655 (895)
31 PRK10747 putative protoheme IX 99.7 1.4E-12 2.9E-17 123.7 34.2 281 152-449 97-388 (398)
32 TIGR00540 hemY_coli hemY prote 99.7 8.2E-13 1.8E-17 125.9 32.7 287 190-483 96-396 (409)
33 TIGR00540 hemY_coli hemY prote 99.6 1.7E-12 3.7E-17 123.8 33.9 290 151-449 96-397 (409)
34 PF13429 TPR_15: Tetratricopep 99.6 2.1E-15 4.5E-20 136.6 12.8 260 108-378 13-274 (280)
35 PRK10747 putative protoheme IX 99.6 3.2E-12 7E-17 121.2 34.2 283 191-485 97-389 (398)
36 KOG2003 TPR repeat-containing 99.6 1.7E-12 3.8E-17 115.6 28.8 405 67-486 202-689 (840)
37 PF13429 TPR_15: Tetratricopep 99.6 3.7E-15 8E-20 135.0 11.5 257 185-448 15-274 (280)
38 COG2956 Predicted N-acetylgluc 99.6 6.2E-12 1.3E-16 107.5 28.1 271 192-468 49-326 (389)
39 COG2956 Predicted N-acetylgluc 99.6 9.5E-12 2.1E-16 106.4 28.0 291 151-452 47-348 (389)
40 KOG1155 Anaphase-promoting com 99.6 2.5E-10 5.4E-15 102.5 37.7 162 249-414 332-493 (559)
41 KOG0495 HAT repeat protein [RN 99.6 1.8E-09 3.9E-14 101.0 44.0 394 81-486 420-880 (913)
42 COG3071 HemY Uncharacterized e 99.6 8.1E-11 1.8E-15 103.9 33.2 286 151-450 96-389 (400)
43 KOG1126 DNA-binding cell divis 99.6 3E-12 6.5E-17 119.8 25.4 283 154-451 334-620 (638)
44 KOG1155 Anaphase-promoting com 99.6 1.4E-10 3E-15 104.1 34.2 287 186-480 235-530 (559)
45 KOG0547 Translocase of outer m 99.6 2E-10 4.2E-15 103.8 35.3 86 70-160 118-204 (606)
46 KOG1126 DNA-binding cell divis 99.6 3.9E-12 8.4E-17 119.1 25.4 285 118-420 334-624 (638)
47 KOG0495 HAT repeat protein [RN 99.5 2.9E-09 6.3E-14 99.7 42.4 395 66-481 379-777 (913)
48 COG3071 HemY Uncharacterized e 99.5 8.6E-10 1.9E-14 97.5 37.0 288 190-487 96-391 (400)
49 KOG1915 Cell cycle control pro 99.5 3.3E-09 7.1E-14 95.7 40.5 393 78-486 84-536 (677)
50 KOG2003 TPR repeat-containing 99.5 1.3E-10 2.7E-15 104.0 31.3 387 73-474 282-711 (840)
51 KOG1915 Cell cycle control pro 99.5 1.9E-08 4.2E-13 90.9 39.8 358 80-451 154-536 (677)
52 PRK12370 invasion protein regu 99.4 3.8E-10 8.2E-15 111.9 31.2 148 155-308 320-467 (553)
53 PRK12370 invasion protein regu 99.4 1.3E-10 2.9E-15 115.2 27.9 250 81-346 275-535 (553)
54 TIGR02521 type_IV_pilW type IV 99.4 2.1E-10 4.5E-15 101.2 25.6 203 65-275 29-231 (234)
55 TIGR02521 type_IV_pilW type IV 99.4 2.6E-10 5.6E-15 100.6 25.6 161 143-309 35-196 (234)
56 KOG1173 Anaphase-promoting com 99.4 6.2E-09 1.3E-13 96.1 33.2 284 175-468 241-533 (611)
57 PF13041 PPR_2: PPR repeat fam 99.4 2E-12 4.4E-17 82.3 6.6 49 245-293 1-49 (50)
58 PF12569 NARP1: NMDA receptor- 99.4 8.9E-09 1.9E-13 98.8 34.3 288 76-379 13-332 (517)
59 KOG4318 Bicoid mRNA stability 99.4 3.8E-10 8.2E-15 109.0 24.3 245 97-367 19-286 (1088)
60 KOG1129 TPR repeat-containing 99.3 1.3E-10 2.8E-15 99.6 18.4 228 216-450 227-457 (478)
61 KOG1129 TPR repeat-containing 99.3 4.7E-10 1E-14 96.3 20.6 229 143-380 227-457 (478)
62 KOG4318 Bicoid mRNA stability 99.3 1.6E-10 3.5E-15 111.4 19.7 243 174-437 21-286 (1088)
63 PF13041 PPR_2: PPR repeat fam 99.3 5.3E-12 1.1E-16 80.3 6.4 50 210-259 1-50 (50)
64 KOG3785 Uncharacterized conser 99.3 9.3E-09 2E-13 89.5 27.6 375 69-460 59-497 (557)
65 PF12569 NARP1: NMDA receptor- 99.3 3.9E-08 8.4E-13 94.5 34.7 297 105-415 6-333 (517)
66 KOG1156 N-terminal acetyltrans 99.3 6.2E-07 1.3E-11 84.6 39.8 373 65-453 73-470 (700)
67 KOG4162 Predicted calmodulin-b 99.3 6.7E-07 1.5E-11 86.0 39.1 414 65-488 321-785 (799)
68 KOG1156 N-terminal acetyltrans 99.2 4.7E-07 1E-11 85.3 36.9 395 69-487 10-469 (700)
69 KOG1840 Kinesin light chain [C 99.2 2.4E-08 5.2E-13 94.8 29.1 237 248-484 200-477 (508)
70 KOG1173 Anaphase-promoting com 99.2 2.8E-08 6E-13 91.9 28.1 282 138-433 243-533 (611)
71 KOG1840 Kinesin light chain [C 99.2 5.6E-09 1.2E-13 99.0 24.5 239 106-344 202-477 (508)
72 COG3063 PilF Tfp pilus assembl 99.2 1.2E-08 2.7E-13 83.7 22.4 197 72-276 40-236 (250)
73 PRK11189 lipoprotein NlpI; Pro 99.2 2.4E-08 5.2E-13 90.7 27.0 88 148-240 73-160 (296)
74 COG3063 PilF Tfp pilus assembl 99.2 2.5E-08 5.4E-13 81.9 23.5 198 105-311 37-236 (250)
75 KOG2047 mRNA splicing factor [ 99.2 1.8E-06 4E-11 81.4 38.5 121 296-417 361-507 (835)
76 KOG1174 Anaphase-promoting com 99.2 2.1E-06 4.6E-11 76.7 37.7 269 174-450 228-499 (564)
77 KOG1174 Anaphase-promoting com 99.2 3.1E-07 6.6E-12 81.9 31.0 289 80-381 209-500 (564)
78 KOG3785 Uncharacterized conser 99.2 8.1E-07 1.8E-11 77.7 33.0 381 77-486 32-490 (557)
79 cd05804 StaR_like StaR_like; a 99.2 5.1E-07 1.1E-11 85.2 34.8 19 361-379 273-291 (355)
80 PRK11189 lipoprotein NlpI; Pro 99.2 7.4E-08 1.6E-12 87.6 27.7 222 152-382 39-266 (296)
81 KOG2047 mRNA splicing factor [ 99.2 4.2E-06 9.2E-11 79.0 38.9 130 69-206 140-276 (835)
82 cd05804 StaR_like StaR_like; a 99.2 4.3E-07 9.4E-12 85.7 33.9 302 141-451 8-336 (355)
83 KOG0547 Translocase of outer m 99.1 2.7E-08 5.8E-13 90.4 22.6 221 78-309 337-564 (606)
84 KOG2376 Signal recognition par 99.1 2.9E-06 6.4E-11 79.3 35.9 385 76-480 21-514 (652)
85 KOG0548 Molecular co-chaperone 99.1 6.1E-07 1.3E-11 82.9 30.0 367 76-460 11-462 (539)
86 KOG4340 Uncharacterized conser 99.0 3E-07 6.6E-12 78.4 23.9 289 73-377 16-335 (459)
87 KOG4162 Predicted calmodulin-b 99.0 2.8E-05 6.1E-10 75.2 37.8 391 77-486 294-749 (799)
88 PRK04841 transcriptional regul 99.0 6.6E-06 1.4E-10 88.0 38.1 341 111-452 382-761 (903)
89 KOG0985 Vesicle coat protein c 99.0 2.2E-05 4.9E-10 78.0 36.1 315 72-447 989-1304(1666)
90 KOG4340 Uncharacterized conser 99.0 3.6E-06 7.8E-11 72.0 27.0 290 106-411 13-334 (459)
91 PRK04841 transcriptional regul 99.0 1.2E-05 2.7E-10 85.9 38.5 336 148-487 383-761 (903)
92 KOG0624 dsRNA-activated protei 99.0 3.2E-06 6.9E-11 73.8 26.9 301 71-381 42-370 (504)
93 KOG3616 Selective LIM binding 98.9 1.9E-06 4.2E-11 82.4 24.9 324 73-448 621-963 (1636)
94 KOG1070 rRNA processing protei 98.9 2.4E-06 5.1E-11 87.4 27.0 233 174-410 1454-1694(1710)
95 PF04733 Coatomer_E: Coatomer 98.9 2.3E-07 5.1E-12 83.1 18.2 251 185-451 8-265 (290)
96 KOG2376 Signal recognition par 98.9 8.2E-05 1.8E-09 70.0 35.1 363 106-487 15-488 (652)
97 PF04733 Coatomer_E: Coatomer 98.9 2.6E-07 5.7E-12 82.7 18.4 27 249-275 133-159 (290)
98 KOG0985 Vesicle coat protein c 98.9 4E-05 8.7E-10 76.3 34.0 302 70-434 1024-1325(1666)
99 KOG0624 dsRNA-activated protei 98.9 1.9E-05 4.1E-10 69.1 28.5 318 101-451 36-370 (504)
100 KOG1127 TPR repeat-containing 98.8 1.3E-05 2.7E-10 79.6 28.4 397 66-475 491-941 (1238)
101 PLN02789 farnesyltranstransfer 98.8 1.4E-05 3E-10 72.7 27.3 147 69-224 39-188 (320)
102 TIGR03302 OM_YfiO outer membra 98.8 1.4E-06 3E-11 76.8 20.4 59 253-311 172-232 (235)
103 PLN02789 farnesyltranstransfer 98.8 1E-05 2.2E-10 73.6 25.7 236 81-345 34-301 (320)
104 PF12854 PPR_1: PPR repeat 98.8 9.4E-09 2E-13 58.5 3.9 32 242-273 2-33 (34)
105 KOG1070 rRNA processing protei 98.8 6.2E-06 1.3E-10 84.5 26.0 221 83-315 1441-1667(1710)
106 PF12854 PPR_1: PPR repeat 98.8 1.1E-08 2.5E-13 58.2 3.8 32 417-448 2-33 (34)
107 KOG0548 Molecular co-chaperone 98.7 5.2E-05 1.1E-09 70.5 29.0 363 110-485 9-454 (539)
108 KOG1125 TPR repeat-containing 98.7 2.5E-06 5.4E-11 79.7 20.4 219 150-377 296-523 (579)
109 KOG1125 TPR repeat-containing 98.7 2.2E-06 4.7E-11 80.0 19.9 222 187-414 294-525 (579)
110 KOG2053 Mitochondrial inherita 98.7 0.00038 8.2E-09 68.9 38.1 191 77-277 53-256 (932)
111 KOG3616 Selective LIM binding 98.7 2.3E-05 5E-10 75.3 26.4 170 253-447 738-907 (1636)
112 KOG1914 mRNA cleavage and poly 98.7 0.0003 6.5E-09 65.6 39.0 413 65-488 18-503 (656)
113 TIGR03302 OM_YfiO outer membra 98.7 4.5E-06 9.7E-11 73.6 19.4 184 138-346 32-232 (235)
114 KOG3617 WD40 and TPR repeat-co 98.7 9.8E-05 2.1E-09 72.1 29.1 244 79-379 740-994 (1416)
115 PRK14720 transcript cleavage f 98.6 2.2E-05 4.7E-10 79.8 25.1 240 64-363 28-268 (906)
116 KOG1128 Uncharacterized conser 98.6 1.5E-05 3.2E-10 76.7 22.3 214 143-380 402-615 (777)
117 COG5010 TadD Flp pilus assembl 98.6 9.1E-06 2E-10 68.7 18.7 152 148-306 75-226 (257)
118 KOG3617 WD40 and TPR repeat-co 98.6 1.1E-05 2.4E-10 78.3 21.4 245 172-449 720-994 (1416)
119 PRK14720 transcript cleavage f 98.6 5.8E-05 1.2E-09 76.8 26.8 238 138-433 30-268 (906)
120 COG5010 TadD Flp pilus assembl 98.6 1.4E-05 3.1E-10 67.5 19.0 165 102-275 66-230 (257)
121 PRK10370 formate-dependent nit 98.6 1.1E-05 2.5E-10 68.2 18.7 120 152-277 52-174 (198)
122 PRK15179 Vi polysaccharide bio 98.6 5.1E-05 1.1E-09 76.3 25.4 165 99-277 82-246 (694)
123 KOG3081 Vesicle coat complex C 98.6 8.2E-05 1.8E-09 63.0 22.4 248 186-449 16-269 (299)
124 KOG1128 Uncharacterized conser 98.6 6.5E-06 1.4E-10 79.0 17.9 241 98-363 393-634 (777)
125 PRK15179 Vi polysaccharide bio 98.5 8.2E-05 1.8E-09 74.8 26.4 209 59-289 20-229 (694)
126 COG4783 Putative Zn-dependent 98.5 5.7E-05 1.2E-09 69.6 22.7 141 111-276 314-454 (484)
127 PRK10370 formate-dependent nit 98.5 4.8E-06 1E-10 70.5 15.1 127 116-250 52-181 (198)
128 KOG3060 Uncharacterized conser 98.5 0.00014 3.1E-09 61.1 21.5 189 80-276 25-220 (289)
129 PRK15359 type III secretion sy 98.5 1.2E-05 2.5E-10 64.4 14.6 105 106-217 27-131 (144)
130 KOG1914 mRNA cleavage and poly 98.4 0.0017 3.6E-08 60.9 33.5 373 100-486 17-464 (656)
131 KOG3081 Vesicle coat complex C 98.4 0.00011 2.3E-09 62.3 19.6 49 193-241 188-236 (299)
132 PRK15359 type III secretion sy 98.4 1.4E-05 3E-10 63.9 13.0 92 145-241 30-121 (144)
133 TIGR02552 LcrH_SycD type III s 98.3 2.9E-05 6.2E-10 61.7 14.1 61 179-239 52-112 (135)
134 TIGR02552 LcrH_SycD type III s 98.3 3.1E-05 6.6E-10 61.5 13.7 107 175-284 14-120 (135)
135 KOG1127 TPR repeat-containing 98.3 0.0021 4.6E-08 64.6 28.3 405 66-482 525-992 (1238)
136 KOG3060 Uncharacterized conser 98.3 0.00082 1.8E-08 56.7 21.8 164 142-312 55-221 (289)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 4.8E-05 1E-09 70.7 15.7 124 141-274 171-295 (395)
138 COG4783 Putative Zn-dependent 98.3 0.00049 1.1E-08 63.7 21.6 122 187-311 315-437 (484)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.8E-05 1.3E-09 70.2 15.6 128 103-240 169-296 (395)
140 KOG2053 Mitochondrial inherita 98.2 0.0084 1.8E-07 59.8 39.5 368 65-448 75-533 (932)
141 KOG2041 WD40 repeat protein [G 98.2 0.0022 4.9E-08 61.8 25.5 25 246-270 851-875 (1189)
142 TIGR00756 PPR pentatricopeptid 98.2 3E-06 6.6E-11 49.0 4.4 33 424-456 2-34 (35)
143 TIGR00756 PPR pentatricopeptid 98.2 3.2E-06 7E-11 48.9 4.2 33 249-281 2-34 (35)
144 PF13812 PPR_3: Pentatricopept 98.2 3.8E-06 8.2E-11 48.2 4.2 33 423-455 2-34 (34)
145 PF09976 TPR_21: Tetratricopep 98.1 0.00017 3.8E-09 57.8 15.1 115 191-307 24-143 (145)
146 PF13812 PPR_3: Pentatricopept 98.1 6.2E-06 1.4E-10 47.3 4.4 32 249-280 3-34 (34)
147 PF09976 TPR_21: Tetratricopep 98.1 0.00028 6.2E-09 56.6 15.2 52 116-167 24-76 (145)
148 PF10037 MRP-S27: Mitochondria 98.1 9.1E-05 2E-09 69.2 13.1 121 350-470 64-186 (429)
149 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00025 5.4E-09 54.7 13.4 104 106-211 5-109 (119)
150 PF10037 MRP-S27: Mitochondria 98.0 0.00015 3.3E-09 67.7 13.2 124 242-365 61-186 (429)
151 PF01535 PPR: PPR repeat; Int 97.9 1.9E-05 4.2E-10 44.0 3.5 30 424-453 2-31 (31)
152 PF01535 PPR: PPR repeat; Int 97.9 1.8E-05 3.9E-10 44.1 3.2 29 249-277 2-30 (31)
153 PF08579 RPM2: Mitochondrial r 97.9 0.00028 6E-09 51.6 9.9 74 219-292 32-114 (120)
154 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00068 1.5E-08 52.2 13.3 96 181-276 5-105 (119)
155 PF05843 Suf: Suppressor of fo 97.9 0.00042 9.1E-09 62.4 13.6 82 193-275 51-135 (280)
156 PF08579 RPM2: Mitochondrial r 97.8 0.00045 9.8E-09 50.5 10.5 77 252-328 30-115 (120)
157 PF14938 SNAP: Soluble NSF att 97.8 0.0049 1.1E-07 55.8 20.0 115 182-310 98-224 (282)
158 cd00189 TPR Tetratricopeptide 97.8 0.00036 7.8E-09 51.0 10.9 93 182-275 4-96 (100)
159 PRK10866 outer membrane biogen 97.8 0.022 4.8E-07 50.0 23.0 73 65-140 31-106 (243)
160 PF05843 Suf: Suppressor of fo 97.8 0.00064 1.4E-08 61.2 13.4 130 105-241 3-136 (280)
161 cd00189 TPR Tetratricopeptide 97.8 0.00038 8.2E-09 50.9 10.2 94 143-241 4-97 (100)
162 COG4700 Uncharacterized protei 97.7 0.0043 9.3E-08 49.9 15.6 125 72-203 94-218 (251)
163 PRK02603 photosystem I assembl 97.7 0.0022 4.7E-08 53.2 15.1 82 143-227 39-121 (172)
164 PF06239 ECSIT: Evolutionarily 97.7 0.00053 1.1E-08 56.8 10.9 87 210-297 45-153 (228)
165 COG3898 Uncharacterized membra 97.7 0.034 7.4E-07 50.3 29.4 289 150-458 95-399 (531)
166 PRK02603 photosystem I assembl 97.7 0.0021 4.5E-08 53.3 14.8 90 104-198 36-126 (172)
167 KOG2041 WD40 repeat protein [G 97.7 0.035 7.6E-07 54.0 24.0 167 78-273 716-904 (1189)
168 CHL00033 ycf3 photosystem I as 97.7 0.001 2.2E-08 55.0 12.5 64 104-167 36-100 (168)
169 PRK10866 outer membrane biogen 97.7 0.022 4.7E-07 50.0 21.0 61 215-276 35-98 (243)
170 PF14938 SNAP: Soluble NSF att 97.7 0.013 2.8E-07 53.1 20.1 129 182-310 118-265 (282)
171 PF12895 Apc3: Anaphase-promot 97.7 0.00018 3.9E-09 51.4 6.6 80 117-202 3-82 (84)
172 CHL00033 ycf3 photosystem I as 97.7 0.0012 2.5E-08 54.6 12.3 82 140-223 36-117 (168)
173 PRK15363 pathogenicity island 97.6 0.0044 9.6E-08 49.1 13.9 85 113-204 45-129 (157)
174 PLN03088 SGT1, suppressor of 97.6 0.0022 4.8E-08 59.9 14.4 90 147-241 10-99 (356)
175 PLN03088 SGT1, suppressor of 97.6 0.002 4.3E-08 60.3 14.0 87 188-275 12-98 (356)
176 PRK15363 pathogenicity island 97.6 0.0017 3.7E-08 51.3 11.2 95 142-241 38-132 (157)
177 PF06239 ECSIT: Evolutionarily 97.6 0.0023 5E-08 53.1 12.2 104 245-367 45-153 (228)
178 PF12895 Apc3: Anaphase-promot 97.5 0.00052 1.1E-08 49.0 6.7 80 153-236 3-82 (84)
179 PF04840 Vps16_C: Vps16, C-ter 97.4 0.09 1.9E-06 48.1 28.9 111 318-448 178-288 (319)
180 PF12688 TPR_5: Tetratrico pep 97.4 0.0092 2E-07 45.5 13.4 108 73-189 7-117 (120)
181 PRK10153 DNA-binding transcrip 97.4 0.015 3.2E-07 57.0 17.6 142 314-460 334-489 (517)
182 PF14559 TPR_19: Tetratricopep 97.4 0.00062 1.3E-08 46.3 5.9 50 152-206 4-53 (68)
183 PF13432 TPR_16: Tetratricopep 97.4 0.00082 1.8E-08 45.2 6.4 61 73-135 3-63 (65)
184 PF13525 YfiO: Outer membrane 97.3 0.049 1.1E-06 46.5 18.4 60 78-137 16-76 (203)
185 KOG1130 Predicted G-alpha GTPa 97.3 0.006 1.3E-07 55.3 12.8 269 74-344 24-342 (639)
186 COG4700 Uncharacterized protei 97.3 0.067 1.4E-06 43.3 17.4 148 78-233 67-214 (251)
187 KOG0553 TPR repeat-containing 97.3 0.0054 1.2E-07 53.4 11.7 96 327-427 91-187 (304)
188 PF13525 YfiO: Outer membrane 97.3 0.054 1.2E-06 46.2 18.0 79 320-404 113-195 (203)
189 PRK10153 DNA-binding transcrip 97.3 0.013 2.9E-07 57.4 15.9 63 282-346 420-482 (517)
190 PRK10803 tol-pal system protei 97.3 0.0084 1.8E-07 53.1 13.2 100 106-207 146-246 (263)
191 PF13432 TPR_16: Tetratricopep 97.3 0.0014 3.1E-08 44.0 6.6 53 187-239 6-58 (65)
192 PF14559 TPR_19: Tetratricopep 97.2 0.0017 3.8E-08 44.1 7.0 63 189-253 2-64 (68)
193 PF03704 BTAD: Bacterial trans 97.2 0.0094 2E-07 47.9 12.2 71 180-250 64-139 (146)
194 COG4235 Cytochrome c biogenesi 97.2 0.02 4.2E-07 50.3 14.5 114 174-290 152-268 (287)
195 PF12688 TPR_5: Tetratrico pep 97.2 0.016 3.4E-07 44.2 12.2 23 183-205 43-65 (120)
196 KOG0553 TPR repeat-containing 97.2 0.029 6.2E-07 49.1 14.8 97 188-287 91-187 (304)
197 PF03704 BTAD: Bacterial trans 97.1 0.035 7.6E-07 44.5 14.8 116 78-216 17-140 (146)
198 KOG2796 Uncharacterized conser 97.1 0.15 3.2E-06 43.8 19.0 59 182-240 181-240 (366)
199 KOG0550 Molecular chaperone (D 97.1 0.23 5E-06 45.6 23.5 274 72-382 54-351 (486)
200 COG4235 Cytochrome c biogenesi 97.1 0.041 8.9E-07 48.4 15.1 125 198-326 142-269 (287)
201 PF13371 TPR_9: Tetratricopept 97.1 0.003 6.5E-08 43.6 6.8 63 74-138 2-64 (73)
202 PF13414 TPR_11: TPR repeat; P 97.0 0.003 6.5E-08 43.0 6.3 59 180-238 5-64 (69)
203 PF13414 TPR_11: TPR repeat; P 97.0 0.0027 5.9E-08 43.2 6.0 62 69-132 5-67 (69)
204 PRK10803 tol-pal system protei 97.0 0.019 4E-07 50.9 12.6 97 180-276 145-246 (263)
205 PF07079 DUF1347: Protein of u 97.0 0.32 7E-06 45.3 36.1 117 364-483 391-521 (549)
206 KOG2796 Uncharacterized conser 96.9 0.24 5.2E-06 42.6 22.2 131 215-346 180-315 (366)
207 PF12921 ATP13: Mitochondrial 96.8 0.027 5.8E-07 43.4 10.3 47 418-464 48-95 (126)
208 KOG1130 Predicted G-alpha GTPa 96.7 0.014 3.1E-07 53.0 9.9 132 318-449 196-342 (639)
209 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.49 1.1E-05 44.1 27.3 145 318-468 398-546 (660)
210 KOG1538 Uncharacterized conser 96.7 0.12 2.6E-06 50.0 15.9 251 211-486 555-846 (1081)
211 PF04053 Coatomer_WDAD: Coatom 96.7 0.062 1.3E-06 51.5 14.3 158 77-273 271-428 (443)
212 PF04840 Vps16_C: Vps16, C-ter 96.6 0.55 1.2E-05 43.0 27.4 108 284-411 179-286 (319)
213 PF12921 ATP13: Mitochondrial 96.6 0.045 9.7E-07 42.2 10.6 50 348-397 48-98 (126)
214 PF13281 DUF4071: Domain of un 96.6 0.56 1.2E-05 43.5 19.4 31 351-381 304-334 (374)
215 KOG0550 Molecular chaperone (D 96.6 0.61 1.3E-05 43.0 23.0 255 149-417 59-351 (486)
216 PF13371 TPR_9: Tetratricopept 96.4 0.021 4.5E-07 39.3 7.4 50 190-239 7-56 (73)
217 PF13281 DUF4071: Domain of un 96.4 0.83 1.8E-05 42.4 20.5 89 134-223 136-228 (374)
218 KOG2280 Vacuolar assembly/sort 96.3 1.4 3E-05 44.0 26.9 340 98-479 427-792 (829)
219 COG1729 Uncharacterized protei 96.3 0.08 1.7E-06 46.0 11.4 104 106-212 145-249 (262)
220 KOG1585 Protein required for f 96.3 0.58 1.3E-05 39.9 15.9 55 285-340 193-250 (308)
221 PF10300 DUF3808: Protein of u 96.3 0.29 6.3E-06 47.7 16.7 164 105-275 190-375 (468)
222 PF10300 DUF3808: Protein of u 96.3 0.45 9.7E-06 46.4 17.9 151 122-277 176-335 (468)
223 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.14 3.1E-06 48.0 13.7 61 68-131 76-140 (453)
224 KOG3941 Intermediate in Toll s 96.3 0.076 1.6E-06 46.0 10.8 100 211-310 66-187 (406)
225 PF13424 TPR_12: Tetratricopep 96.1 0.016 3.6E-07 40.5 5.5 26 180-205 7-32 (78)
226 PF04053 Coatomer_WDAD: Coatom 96.1 0.12 2.5E-06 49.7 12.5 131 179-341 296-426 (443)
227 COG4105 ComL DNA uptake lipopr 96.1 0.85 1.9E-05 39.4 20.2 75 64-139 32-107 (254)
228 COG5107 RNA14 Pre-mRNA 3'-end 96.1 1.3 2.8E-05 41.4 32.9 426 46-487 20-532 (660)
229 PF13424 TPR_12: Tetratricopep 96.0 0.022 4.8E-07 39.8 5.8 62 213-274 6-73 (78)
230 PF09205 DUF1955: Domain of un 96.0 0.47 1E-05 36.2 13.9 64 354-418 88-151 (161)
231 COG4105 ComL DNA uptake lipopr 96.0 0.89 1.9E-05 39.4 22.5 186 101-310 33-232 (254)
232 PF13170 DUF4003: Protein of u 96.0 1.2 2.5E-05 40.4 19.9 131 298-430 78-225 (297)
233 COG4649 Uncharacterized protei 95.9 0.53 1.2E-05 37.8 13.0 123 150-275 69-195 (221)
234 PRK15331 chaperone protein Sic 95.8 0.21 4.5E-06 40.0 10.7 91 109-206 43-133 (165)
235 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.32 6.9E-06 45.8 13.5 67 135-206 71-140 (453)
236 PF13512 TPR_18: Tetratricopep 95.7 0.35 7.7E-06 37.8 11.5 75 64-139 8-83 (142)
237 PF08631 SPO22: Meiosis protei 95.7 1.5 3.3E-05 39.5 23.7 125 78-207 4-150 (278)
238 PRK15331 chaperone protein Sic 95.7 0.18 3.9E-06 40.4 9.9 87 149-240 47-133 (165)
239 KOG1538 Uncharacterized conser 95.6 2.5 5.4E-05 41.6 19.0 81 255-346 755-846 (1081)
240 PF09205 DUF1955: Domain of un 95.6 0.75 1.6E-05 35.1 12.6 139 294-454 14-152 (161)
241 KOG4555 TPR repeat-containing 95.5 0.16 3.5E-06 38.5 8.4 90 148-242 52-145 (175)
242 KOG1585 Protein required for f 95.5 1.4 3.1E-05 37.6 20.1 56 319-375 192-250 (308)
243 smart00299 CLH Clathrin heavy 95.4 1.1 2.3E-05 35.5 14.8 40 219-259 14-53 (140)
244 COG1729 Uncharacterized protei 95.3 0.47 1E-05 41.3 12.0 98 68-168 143-244 (262)
245 KOG3941 Intermediate in Toll s 95.3 0.15 3.3E-06 44.2 8.8 105 244-367 64-173 (406)
246 KOG4555 TPR repeat-containing 95.2 0.87 1.9E-05 34.7 11.5 91 186-277 51-145 (175)
247 smart00299 CLH Clathrin heavy 95.2 1.2 2.6E-05 35.2 15.3 127 180-328 9-136 (140)
248 COG3118 Thioredoxin domain-con 95.2 1.4 3E-05 39.0 14.4 154 109-270 140-295 (304)
249 PF13512 TPR_18: Tetratricopep 95.2 1.2 2.6E-05 34.9 13.3 110 103-213 10-134 (142)
250 PF13170 DUF4003: Protein of u 95.1 1.1 2.4E-05 40.6 14.5 131 263-395 78-225 (297)
251 KOG0543 FKBP-type peptidyl-pro 95.1 0.62 1.4E-05 42.9 12.8 96 178-275 257-354 (397)
252 PF08631 SPO22: Meiosis protei 95.1 2.4 5.3E-05 38.2 25.4 19 114-132 4-22 (278)
253 COG4649 Uncharacterized protei 95.1 1.4 3.1E-05 35.5 13.6 124 78-206 69-195 (221)
254 PF07035 Mic1: Colon cancer-as 95.0 1.6 3.4E-05 35.5 15.9 28 236-263 18-45 (167)
255 KOG2610 Uncharacterized conser 94.9 2.7 5.8E-05 37.8 16.3 114 261-376 117-233 (491)
256 COG3898 Uncharacterized membra 94.9 3.1 6.6E-05 38.4 33.8 310 81-416 67-392 (531)
257 KOG1258 mRNA processing protei 94.9 4.1 8.9E-05 39.8 34.7 97 70-168 82-180 (577)
258 PF13428 TPR_14: Tetratricopep 94.8 0.098 2.1E-06 31.6 4.9 37 181-217 4-40 (44)
259 KOG1920 IkappaB kinase complex 94.8 6.6 0.00014 41.7 20.3 105 252-376 944-1050(1265)
260 KOG2114 Vacuolar assembly/sort 94.7 2.9 6.3E-05 42.4 16.9 176 181-378 337-516 (933)
261 PF07035 Mic1: Colon cancer-as 94.7 1.9 4.1E-05 35.0 14.8 135 267-415 14-148 (167)
262 COG3118 Thioredoxin domain-con 94.6 3.1 6.8E-05 36.9 15.3 142 148-296 143-286 (304)
263 PF13428 TPR_14: Tetratricopep 94.4 0.15 3.3E-06 30.8 5.1 33 104-136 2-34 (44)
264 COG3629 DnrI DNA-binding trans 94.2 0.75 1.6E-05 40.8 10.8 79 317-396 153-236 (280)
265 PRK11906 transcriptional regul 94.2 4.1 9E-05 38.7 16.0 74 371-447 323-397 (458)
266 PF09613 HrpB1_HrpK: Bacterial 94.2 2.4 5.2E-05 34.0 13.6 74 145-224 16-89 (160)
267 COG4785 NlpI Lipoprotein NlpI, 94.2 3 6.6E-05 35.1 14.8 183 81-277 79-267 (297)
268 KOG2610 Uncharacterized conser 94.1 4.3 9.2E-05 36.6 18.5 117 190-307 115-234 (491)
269 KOG1920 IkappaB kinase complex 94.0 10 0.00022 40.4 21.3 80 358-448 971-1052(1265)
270 KOG0543 FKBP-type peptidyl-pro 93.8 1.7 3.8E-05 40.1 12.5 137 148-311 217-355 (397)
271 COG3629 DnrI DNA-binding trans 93.7 0.79 1.7E-05 40.6 9.9 77 180-256 155-236 (280)
272 KOG1550 Extracellular protein 93.5 9.3 0.0002 38.4 25.2 186 119-312 228-427 (552)
273 PRK11906 transcriptional regul 93.4 5.6 0.00012 37.9 15.4 131 104-241 252-401 (458)
274 PF04097 Nic96: Nup93/Nic96; 93.4 5 0.00011 40.9 16.5 224 65-312 110-357 (613)
275 KOG1941 Acetylcholine receptor 93.3 6.4 0.00014 36.0 16.5 226 188-415 16-274 (518)
276 PF04097 Nic96: Nup93/Nic96; 93.2 11 0.00024 38.4 19.4 89 253-346 264-356 (613)
277 PF10602 RPN7: 26S proteasome 92.9 1.9 4.2E-05 35.7 10.6 14 295-308 126-139 (177)
278 COG0457 NrfG FOG: TPR repeat [ 92.3 6.6 0.00014 33.6 29.9 202 247-451 59-265 (291)
279 PF07079 DUF1347: Protein of u 92.3 10 0.00023 35.9 36.6 365 65-461 126-529 (549)
280 KOG0276 Vesicle coat complex C 92.1 1.1 2.3E-05 43.6 9.0 150 151-343 598-747 (794)
281 PF13176 TPR_7: Tetratricopept 91.8 0.42 9E-06 27.3 4.0 26 424-449 1-26 (36)
282 PF04184 ST7: ST7 protein; In 91.8 13 0.00028 35.8 18.0 61 319-379 261-322 (539)
283 PF10602 RPN7: 26S proteasome 91.7 2.9 6.4E-05 34.6 10.4 95 353-449 37-140 (177)
284 PF09613 HrpB1_HrpK: Bacterial 91.7 5.9 0.00013 31.8 11.6 56 111-168 18-73 (160)
285 KOG2280 Vacuolar assembly/sort 91.7 17 0.00036 36.9 33.6 309 144-486 442-773 (829)
286 PF13176 TPR_7: Tetratricopept 91.5 0.49 1.1E-05 27.0 4.0 24 250-273 2-25 (36)
287 TIGR02561 HrpB1_HrpK type III 91.3 6.1 0.00013 31.2 12.4 53 149-206 20-72 (153)
288 COG0457 NrfG FOG: TPR repeat [ 91.2 8.7 0.00019 32.8 29.4 223 260-486 36-265 (291)
289 KOG1941 Acetylcholine receptor 91.1 7.8 0.00017 35.5 12.7 170 104-273 84-272 (518)
290 KOG0276 Vesicle coat complex C 90.9 6.7 0.00014 38.4 12.8 132 105-273 616-747 (794)
291 KOG2114 Vacuolar assembly/sort 90.7 22 0.00047 36.6 26.9 173 75-275 342-518 (933)
292 COG2976 Uncharacterized protei 90.7 6.5 0.00014 32.6 11.0 93 108-206 94-187 (207)
293 TIGR02561 HrpB1_HrpK type III 90.7 7 0.00015 30.9 11.6 53 114-168 21-73 (153)
294 PF13929 mRNA_stabil: mRNA sta 90.7 12 0.00025 33.4 17.6 116 262-377 143-263 (292)
295 KOG4570 Uncharacterized conser 90.4 4.8 0.0001 36.0 10.6 102 174-277 60-165 (418)
296 KOG4570 Uncharacterized conser 90.2 4.8 0.0001 36.0 10.4 100 209-310 61-163 (418)
297 KOG2066 Vacuolar assembly/sort 89.8 25 0.00055 35.8 26.3 24 252-275 510-533 (846)
298 PF13431 TPR_17: Tetratricopep 89.4 0.52 1.1E-05 26.5 2.8 25 174-198 9-33 (34)
299 PF04184 ST7: ST7 protein; In 88.7 24 0.00052 34.1 16.4 54 395-448 267-321 (539)
300 PF02259 FAT: FAT domain; Int 88.6 21 0.00046 33.3 26.7 65 246-310 145-212 (352)
301 PF02284 COX5A: Cytochrome c o 88.5 2.8 6.2E-05 30.4 6.5 74 390-464 11-86 (108)
302 PF13431 TPR_17: Tetratricopep 88.2 0.57 1.2E-05 26.3 2.4 25 208-232 9-33 (34)
303 PF00515 TPR_1: Tetratricopept 87.8 1.8 3.9E-05 24.0 4.5 30 105-134 3-32 (34)
304 COG4785 NlpI Lipoprotein NlpI, 87.6 16 0.00036 30.9 16.8 164 174-346 95-266 (297)
305 PF07719 TPR_2: Tetratricopept 87.6 2 4.3E-05 23.7 4.6 29 106-134 4-32 (34)
306 KOG1550 Extracellular protein 87.2 36 0.00077 34.4 23.2 181 83-278 228-428 (552)
307 PF13934 ELYS: Nuclear pore co 86.9 20 0.00043 31.2 14.0 20 109-128 114-133 (226)
308 cd00923 Cyt_c_Oxidase_Va Cytoc 86.8 6.9 0.00015 28.2 7.5 59 370-429 25-83 (103)
309 PF13174 TPR_6: Tetratricopept 86.7 1.2 2.6E-05 24.4 3.3 26 109-134 6-31 (33)
310 PF13374 TPR_10: Tetratricopep 86.6 1.8 3.8E-05 25.3 4.2 28 423-450 3-30 (42)
311 KOG0890 Protein kinase of the 86.2 77 0.0017 37.2 26.6 322 72-416 1388-1731(2382)
312 COG2909 MalT ATP-dependent tra 86.0 47 0.001 34.6 26.9 221 189-412 426-684 (894)
313 COG3947 Response regulator con 85.5 26 0.00057 31.2 16.4 41 229-271 150-190 (361)
314 PF13374 TPR_10: Tetratricopep 85.4 2.3 5E-05 24.8 4.3 28 248-275 3-30 (42)
315 PF02284 COX5A: Cytochrome c o 85.4 12 0.00026 27.3 9.3 60 370-430 28-87 (108)
316 COG1747 Uncharacterized N-term 85.4 38 0.00081 32.9 21.4 168 207-381 61-234 (711)
317 PF00515 TPR_1: Tetratricopept 85.2 2.8 6.1E-05 23.2 4.4 27 249-275 3-29 (34)
318 PF11207 DUF2989: Protein of u 85.0 16 0.00035 30.6 10.1 81 114-198 118-198 (203)
319 PF00637 Clathrin: Region in C 84.7 0.61 1.3E-05 37.1 1.9 53 219-271 14-66 (143)
320 COG4455 ImpE Protein of avirul 84.7 7 0.00015 33.1 7.8 72 145-221 7-81 (273)
321 COG4455 ImpE Protein of avirul 84.6 8 0.00017 32.7 8.1 77 180-256 3-81 (273)
322 PRK15180 Vi polysaccharide bio 84.5 39 0.00085 32.4 28.2 123 112-241 298-420 (831)
323 COG3947 Response regulator con 84.5 13 0.00028 33.1 9.6 57 182-238 283-339 (361)
324 KOG0890 Protein kinase of the 84.4 93 0.002 36.6 29.6 317 110-451 1390-1731(2382)
325 cd00923 Cyt_c_Oxidase_Va Cytoc 84.3 8.8 0.00019 27.7 7.1 62 402-464 22-83 (103)
326 COG1747 Uncharacterized N-term 84.0 44 0.00094 32.5 24.4 94 246-344 65-158 (711)
327 PF07719 TPR_2: Tetratricopept 83.9 3.2 6.9E-05 22.8 4.2 28 424-451 3-30 (34)
328 PF13929 mRNA_stabil: mRNA sta 83.8 32 0.00069 30.8 17.3 136 333-468 144-289 (292)
329 KOG1464 COP9 signalosome, subu 83.5 31 0.00066 30.4 18.2 228 143-377 69-328 (440)
330 PF07163 Pex26: Pex26 protein; 83.0 11 0.00023 33.3 8.6 122 75-201 43-181 (309)
331 PF11207 DUF2989: Protein of u 82.4 15 0.00033 30.8 9.0 20 281-300 177-196 (203)
332 PF07163 Pex26: Pex26 protein; 82.0 18 0.00039 32.0 9.6 57 219-275 90-146 (309)
333 PF00637 Clathrin: Region in C 81.8 0.68 1.5E-05 36.8 1.1 54 253-306 13-66 (143)
334 KOG0686 COP9 signalosome, subu 81.4 48 0.001 31.2 14.3 62 180-241 152-216 (466)
335 KOG4234 TPR repeat-containing 80.3 26 0.00057 29.3 9.5 21 186-206 176-196 (271)
336 PRK09687 putative lyase; Provi 80.0 46 0.00099 30.1 27.4 201 246-467 67-277 (280)
337 PF14561 TPR_20: Tetratricopep 79.6 17 0.00037 26.1 7.5 56 100-155 19-74 (90)
338 PF13181 TPR_8: Tetratricopept 79.4 5.7 0.00012 21.8 4.2 27 424-450 3-29 (34)
339 KOG2063 Vacuolar assembly/sort 78.3 97 0.0021 32.9 15.0 28 249-276 506-533 (877)
340 TIGR03504 FimV_Cterm FimV C-te 78.2 6 0.00013 23.8 4.0 24 253-276 5-28 (44)
341 PF02259 FAT: FAT domain; Int 77.8 61 0.0013 30.2 23.0 67 210-276 144-213 (352)
342 PF07721 TPR_4: Tetratricopept 77.6 3.7 8E-05 21.2 2.7 20 427-446 6-25 (26)
343 COG2976 Uncharacterized protei 77.3 42 0.0009 28.1 14.3 88 360-452 97-189 (207)
344 TIGR03504 FimV_Cterm FimV C-te 77.1 6 0.00013 23.8 3.8 23 428-450 5-27 (44)
345 KOG4521 Nuclear pore complex, 76.8 95 0.0021 33.7 14.2 130 140-271 984-1126(1480)
346 PF11846 DUF3366: Domain of un 76.7 10 0.00023 31.9 6.8 56 79-134 120-175 (193)
347 KOG1586 Protein required for f 76.3 50 0.0011 28.5 19.3 23 398-420 165-187 (288)
348 PF13174 TPR_6: Tetratricopept 76.3 3.1 6.6E-05 22.7 2.4 23 145-167 6-28 (33)
349 PF13181 TPR_8: Tetratricopept 76.2 6.3 0.00014 21.6 3.7 26 106-131 4-29 (34)
350 PF11848 DUF3368: Domain of un 75.5 12 0.00026 23.0 5.0 33 433-465 13-45 (48)
351 PF08424 NRDE-2: NRDE-2, neces 75.3 69 0.0015 29.6 17.0 117 156-277 48-184 (321)
352 KOG4234 TPR repeat-containing 75.1 49 0.0011 27.8 9.8 90 187-277 104-198 (271)
353 KOG4648 Uncharacterized conser 74.2 18 0.00039 32.9 7.6 48 362-411 107-155 (536)
354 COG5159 RPN6 26S proteasome re 73.6 67 0.0014 28.7 13.1 150 328-477 14-185 (421)
355 PF07575 Nucleopor_Nup85: Nup8 73.6 1.1E+02 0.0024 31.1 20.0 60 30-93 113-174 (566)
356 KOG4648 Uncharacterized conser 73.2 14 0.00029 33.7 6.6 81 74-165 104-184 (536)
357 PF13762 MNE1: Mitochondrial s 73.1 45 0.00097 26.5 10.3 24 355-378 42-65 (145)
358 PF13762 MNE1: Mitochondrial s 72.2 47 0.001 26.3 11.8 98 379-476 29-134 (145)
359 PF10579 Rapsyn_N: Rapsyn N-te 72.2 12 0.00026 25.9 4.7 46 399-444 18-65 (80)
360 PF14853 Fis1_TPR_C: Fis1 C-te 71.6 19 0.00042 22.7 5.3 36 108-143 6-41 (53)
361 KOG1586 Protein required for f 71.5 67 0.0015 27.8 17.5 19 259-277 166-184 (288)
362 PRK10941 hypothetical protein; 70.6 59 0.0013 29.1 10.1 80 106-190 184-263 (269)
363 PF06552 TOM20_plant: Plant sp 70.1 44 0.00094 27.6 8.2 95 175-277 22-137 (186)
364 PF14689 SPOB_a: Sensor_kinase 69.7 14 0.00031 24.2 4.6 46 228-275 6-51 (62)
365 PF06552 TOM20_plant: Plant sp 69.4 64 0.0014 26.7 9.6 65 84-152 8-82 (186)
366 KOG4077 Cytochrome c oxidase, 69.2 43 0.00093 25.7 7.4 58 371-429 68-125 (149)
367 PHA02875 ankyrin repeat protei 69.2 1.1E+02 0.0024 29.4 15.2 8 258-265 76-83 (413)
368 PF10345 Cohesin_load: Cohesin 69.0 1.4E+02 0.0031 30.6 36.6 133 72-205 105-252 (608)
369 KOG1258 mRNA processing protei 68.1 1.3E+02 0.0029 29.9 33.3 380 82-478 60-496 (577)
370 PF12862 Apc5: Anaphase-promot 68.0 25 0.00054 25.4 6.2 55 78-132 9-70 (94)
371 PF11846 DUF3366: Domain of un 67.9 31 0.00067 29.0 7.7 33 208-240 140-172 (193)
372 PRK15180 Vi polysaccharide bio 67.8 1.2E+02 0.0026 29.3 15.0 92 185-277 330-421 (831)
373 KOG4077 Cytochrome c oxidase, 64.3 42 0.00091 25.7 6.5 45 230-274 67-111 (149)
374 smart00028 TPR Tetratricopepti 63.9 12 0.00026 19.3 3.1 22 109-130 7-28 (34)
375 PHA02875 ankyrin repeat protei 63.6 1.4E+02 0.0031 28.6 15.0 209 222-457 9-230 (413)
376 KOG2034 Vacuolar sorting prote 63.4 2E+02 0.0044 30.3 26.2 53 108-165 363-415 (911)
377 KOG2396 HAT (Half-A-TPR) repea 63.3 1.5E+02 0.0034 28.9 32.5 93 84-184 88-180 (568)
378 PF10366 Vps39_1: Vacuolar sor 63.1 61 0.0013 24.2 8.4 27 424-450 41-67 (108)
379 PF11848 DUF3368: Domain of un 62.6 34 0.00073 21.0 5.1 29 225-253 15-43 (48)
380 PF10579 Rapsyn_N: Rapsyn N-te 62.3 26 0.00055 24.3 4.7 46 364-409 18-65 (80)
381 KOG1464 COP9 signalosome, subu 61.8 1.2E+02 0.0025 27.0 25.1 255 79-341 39-327 (440)
382 PF14689 SPOB_a: Sensor_kinase 61.7 22 0.00047 23.4 4.3 29 351-379 22-50 (62)
383 KOG0292 Vesicle coat complex C 59.2 68 0.0015 33.5 9.0 158 108-311 625-782 (1202)
384 PF08311 Mad3_BUB1_I: Mad3/BUB 59.0 82 0.0018 24.3 8.8 44 157-203 81-124 (126)
385 KOG2297 Predicted translation 58.8 1.4E+02 0.0031 27.0 13.9 21 351-371 320-340 (412)
386 COG5108 RPO41 Mitochondrial DN 58.6 65 0.0014 32.5 8.5 91 182-275 32-131 (1117)
387 cd08819 CARD_MDA5_2 Caspase ac 57.9 65 0.0014 22.9 6.6 14 261-274 50-63 (88)
388 smart00386 HAT HAT (Half-A-TPR 57.6 23 0.0005 18.8 3.6 23 194-216 3-25 (33)
389 cd08819 CARD_MDA5_2 Caspase ac 57.4 67 0.0014 22.8 6.5 11 333-343 52-62 (88)
390 PRK09687 putative lyase; Provi 57.4 1.5E+02 0.0032 26.8 28.7 232 177-432 36-277 (280)
391 COG5108 RPO41 Mitochondrial DN 57.4 71 0.0015 32.2 8.5 95 143-241 32-132 (1117)
392 KOG4507 Uncharacterized conser 57.2 1.9E+02 0.0041 29.0 11.1 87 151-241 619-705 (886)
393 TIGR02508 type_III_yscG type I 57.1 75 0.0016 23.3 7.7 45 82-128 20-64 (115)
394 PF10345 Cohesin_load: Cohesin 56.5 2.4E+02 0.0053 29.0 41.4 22 464-485 584-605 (608)
395 KOG0991 Replication factor C, 56.3 1.4E+02 0.003 26.1 12.5 36 385-421 237-272 (333)
396 PRK10564 maltose regulon perip 56.2 24 0.00053 31.7 4.9 36 425-460 260-295 (303)
397 PF07575 Nucleopor_Nup85: Nup8 56.0 1.5E+02 0.0032 30.2 11.2 57 318-376 406-462 (566)
398 KOG4279 Serine/threonine prote 55.9 1.6E+02 0.0036 30.3 10.7 128 120-249 180-322 (1226)
399 COG2909 MalT ATP-dependent tra 55.7 2.8E+02 0.006 29.4 31.5 226 149-377 425-684 (894)
400 KOG2582 COP9 signalosome, subu 55.6 1.8E+02 0.0039 27.2 16.7 16 224-239 195-210 (422)
401 COG0735 Fur Fe2+/Zn2+ uptake r 55.1 76 0.0017 25.2 7.3 62 374-436 8-69 (145)
402 PF13934 ELYS: Nuclear pore co 54.3 81 0.0017 27.4 7.9 71 72-150 113-183 (226)
403 COG0790 FOG: TPR repeat, SEL1 54.0 1.7E+02 0.0037 26.4 21.9 45 230-277 173-221 (292)
404 PF12862 Apc5: Anaphase-promot 53.9 81 0.0018 22.7 7.6 22 184-205 47-68 (94)
405 KOG3364 Membrane protein invol 53.8 91 0.002 24.4 6.9 69 100-168 29-100 (149)
406 PF07064 RIC1: RIC1; InterPro 53.6 1.6E+02 0.0036 26.2 14.8 34 66-99 81-114 (258)
407 PF14853 Fis1_TPR_C: Fis1 C-te 53.0 42 0.0009 21.2 4.3 34 428-463 7-40 (53)
408 PF11838 ERAP1_C: ERAP1-like C 52.4 1.9E+02 0.0041 26.6 19.6 150 333-488 146-307 (324)
409 cd00280 TRFH Telomeric Repeat 52.4 1.3E+02 0.0029 24.9 8.0 66 155-227 85-158 (200)
410 PRK10564 maltose regulon perip 52.3 31 0.00068 31.0 5.0 28 251-278 261-288 (303)
411 KOG4642 Chaperone-dependent E3 51.8 1.7E+02 0.0036 25.7 10.4 22 183-204 83-104 (284)
412 KOG4521 Nuclear pore complex, 51.4 3.7E+02 0.0081 29.6 14.6 124 249-374 985-1124(1480)
413 KOG2659 LisH motif-containing 51.2 1.6E+02 0.0035 25.4 9.5 69 100-168 23-93 (228)
414 KOG2066 Vacuolar assembly/sort 50.8 3.1E+02 0.0068 28.6 26.6 54 75-131 364-420 (846)
415 PRK11619 lytic murein transgly 49.8 3.2E+02 0.0069 28.4 36.1 116 226-344 255-373 (644)
416 KOG0991 Replication factor C, 49.8 1.8E+02 0.0038 25.4 13.3 46 244-291 236-281 (333)
417 KOG0292 Vesicle coat complex C 49.7 1.8E+02 0.0039 30.7 10.1 179 260-488 606-784 (1202)
418 PF11663 Toxin_YhaV: Toxin wit 49.2 18 0.00039 28.0 2.6 31 434-466 107-137 (140)
419 KOG4507 Uncharacterized conser 49.0 87 0.0019 31.1 7.6 163 194-359 551-717 (886)
420 PF08311 Mad3_BUB1_I: Mad3/BUB 48.7 1.2E+02 0.0027 23.3 9.9 41 196-236 81-123 (126)
421 KOG1114 Tripeptidyl peptidase 48.2 3.8E+02 0.0082 28.8 15.5 69 229-297 1213-1282(1304)
422 PF11663 Toxin_YhaV: Toxin wit 48.2 25 0.00053 27.3 3.2 28 401-430 109-136 (140)
423 KOG0376 Serine-threonine phosp 48.1 70 0.0015 30.9 6.8 54 78-133 15-68 (476)
424 PF08424 NRDE-2: NRDE-2, neces 48.0 2.3E+02 0.005 26.2 17.9 152 120-288 48-225 (321)
425 KOG3677 RNA polymerase I-assoc 47.8 2.6E+02 0.0055 26.7 10.0 62 213-274 236-299 (525)
426 COG0735 Fur Fe2+/Zn2+ uptake r 47.7 1.3E+02 0.0029 23.8 7.6 63 339-402 8-70 (145)
427 PF11817 Foie-gras_1: Foie gra 47.5 87 0.0019 27.6 7.2 60 145-204 184-244 (247)
428 KOG2168 Cullins [Cell cycle co 47.0 3.7E+02 0.0081 28.4 21.2 35 255-291 476-510 (835)
429 COG2178 Predicted RNA-binding 46.9 1.7E+02 0.0038 24.5 9.8 19 187-205 38-56 (204)
430 COG5159 RPN6 26S proteasome re 46.6 2.2E+02 0.0048 25.6 16.6 23 184-206 9-31 (421)
431 PRK14700 recombination factor 46.6 2.3E+02 0.005 25.8 11.9 65 214-278 125-197 (300)
432 COG0790 FOG: TPR repeat, SEL1 46.1 2.3E+02 0.0049 25.6 22.5 83 224-312 53-143 (292)
433 KOG2034 Vacuolar sorting prote 45.8 4E+02 0.0086 28.3 26.4 73 143-230 362-434 (911)
434 COG2178 Predicted RNA-binding 45.3 1.9E+02 0.004 24.4 11.6 61 149-211 39-102 (204)
435 PF10366 Vps39_1: Vacuolar sor 44.9 1.3E+02 0.0028 22.5 7.1 27 249-275 41-67 (108)
436 KOG0686 COP9 signalosome, subu 44.9 2.8E+02 0.0062 26.4 16.4 160 213-380 151-332 (466)
437 KOG4642 Chaperone-dependent E3 44.6 2.2E+02 0.0047 25.0 11.1 123 77-204 20-143 (284)
438 PF15297 CKAP2_C: Cytoskeleton 44.3 2.1E+02 0.0046 26.5 8.9 63 404-468 120-186 (353)
439 PRK09857 putative transposase; 43.9 2.3E+02 0.0049 25.9 9.3 65 215-280 209-273 (292)
440 PF02847 MA3: MA3 domain; Int 43.8 1.1E+02 0.0024 22.7 6.5 19 324-342 9-27 (113)
441 PF11817 Foie-gras_1: Foie gra 42.9 1.5E+02 0.0033 26.1 8.0 56 357-412 183-243 (247)
442 COG2256 MGS1 ATPase related to 42.7 3.1E+02 0.0067 26.2 15.1 32 252-283 251-285 (436)
443 PF05944 Phage_term_smal: Phag 42.5 1.6E+02 0.0036 22.9 7.9 30 390-419 51-80 (132)
444 cd00245 Glm_e Coenzyme B12-dep 42.4 29 0.00064 33.1 3.5 188 296-488 25-235 (428)
445 PRK10941 hypothetical protein; 40.7 2.7E+02 0.0059 25.0 10.1 60 182-241 185-244 (269)
446 PF00244 14-3-3: 14-3-3 protei 40.5 2.5E+02 0.0055 24.6 9.5 17 433-449 180-196 (236)
447 KOG0545 Aryl-hydrocarbon recep 40.4 2.6E+02 0.0056 24.6 8.8 61 181-241 233-293 (329)
448 TIGR01228 hutU urocanate hydra 40.3 3.7E+02 0.008 26.4 10.3 20 433-452 404-423 (545)
449 KOG1524 WD40 repeat-containing 40.2 1.9E+02 0.0041 28.5 8.2 61 174-239 569-629 (737)
450 PF04190 DUF410: Protein of un 40.1 2.7E+02 0.0059 24.8 19.0 26 246-271 89-114 (260)
451 PF12926 MOZART2: Mitotic-spin 39.5 1.4E+02 0.003 21.2 8.5 46 443-488 29-74 (88)
452 PF14669 Asp_Glu_race_2: Putat 39.0 2.4E+02 0.0051 23.8 15.3 183 240-447 1-206 (233)
453 KOG4567 GTPase-activating prot 38.9 3E+02 0.0064 25.2 8.7 43 268-310 264-306 (370)
454 TIGR02508 type_III_yscG type I 38.8 1.6E+02 0.0034 21.7 9.1 14 327-340 49-62 (115)
455 PRK13342 recombination factor 38.7 3.7E+02 0.0081 26.0 18.4 35 261-295 244-278 (413)
456 PRK13342 recombination factor 38.6 3.7E+02 0.0081 26.0 19.1 21 366-386 244-264 (413)
457 PRK11639 zinc uptake transcrip 38.6 1.9E+02 0.0041 23.7 7.4 62 378-440 17-78 (169)
458 KOG0687 26S proteasome regulat 38.3 3.3E+02 0.007 25.2 14.6 17 227-243 37-53 (393)
459 KOG2297 Predicted translation 37.3 3.3E+02 0.0071 24.9 20.1 17 424-440 323-339 (412)
460 KOG2300 Uncharacterized conser 37.3 4.1E+02 0.0089 26.1 31.2 374 80-458 60-522 (629)
461 PF03745 DUF309: Domain of unk 36.9 1.2E+02 0.0026 19.9 5.5 33 364-396 11-43 (62)
462 COG5187 RPN7 26S proteasome re 35.6 3.4E+02 0.0073 24.6 14.1 25 353-377 116-140 (412)
463 PRK09857 putative transposase; 35.6 3.5E+02 0.0075 24.7 10.3 63 393-456 212-274 (292)
464 KOG2659 LisH motif-containing 34.6 3.1E+02 0.0067 23.8 9.1 65 314-380 23-92 (228)
465 PF08780 NTase_sub_bind: Nucle 34.0 2.2E+02 0.0047 21.9 7.0 21 251-271 63-83 (124)
466 PF12926 MOZART2: Mitotic-spin 33.9 1.7E+02 0.0038 20.7 7.9 42 233-274 29-70 (88)
467 PRK11639 zinc uptake transcrip 33.8 2.7E+02 0.0058 22.9 7.7 61 343-404 17-77 (169)
468 TIGR01987 HI0074 nucleotidyltr 33.4 2.2E+02 0.0049 21.9 7.1 48 229-276 39-88 (123)
469 KOG0687 26S proteasome regulat 33.3 3.9E+02 0.0085 24.7 16.6 29 139-167 104-132 (393)
470 PF09454 Vps23_core: Vps23 cor 33.0 94 0.002 20.7 3.8 47 210-257 6-52 (65)
471 KOG4567 GTPase-activating prot 32.9 2.4E+02 0.0053 25.7 7.3 42 338-379 264-305 (370)
472 PF10475 DUF2450: Protein of u 32.6 3.9E+02 0.0083 24.3 14.2 24 314-337 194-217 (291)
473 KOG4279 Serine/threonine prote 32.4 6.1E+02 0.013 26.6 12.3 113 195-310 180-315 (1226)
474 PRK14700 recombination factor 31.5 4.1E+02 0.0088 24.3 14.6 45 253-297 129-176 (300)
475 PF09986 DUF2225: Uncharacteri 31.5 2.6E+02 0.0057 24.0 7.4 49 84-132 142-194 (214)
476 PF04190 DUF410: Protein of un 31.3 3.8E+02 0.0083 23.9 19.1 24 351-374 89-112 (260)
477 smart00804 TAP_C C-terminal do 30.0 48 0.001 21.9 2.0 25 80-104 38-62 (63)
478 KOG1308 Hsp70-interacting prot 29.3 51 0.0011 30.2 2.7 91 189-281 125-216 (377)
479 KOG1114 Tripeptidyl peptidase 29.2 7.7E+02 0.017 26.8 14.9 28 352-379 1231-1258(1304)
480 PF09797 NatB_MDM20: N-acetylt 28.8 5E+02 0.011 24.5 20.6 56 299-355 200-255 (365)
481 cd07153 Fur_like Ferric uptake 28.5 1.8E+02 0.004 21.7 5.5 46 358-403 6-51 (116)
482 PF09477 Type_III_YscG: Bacter 28.3 2.6E+02 0.0056 21.0 9.5 40 81-122 20-59 (116)
483 cd07153 Fur_like Ferric uptake 27.8 1.6E+02 0.0035 22.0 5.0 47 323-369 6-52 (116)
484 PF01475 FUR: Ferric uptake re 27.7 1.7E+02 0.0036 22.2 5.1 46 357-402 12-57 (120)
485 PF00531 Death: Death domain; 27.7 1.1E+02 0.0024 21.0 3.9 44 437-482 39-82 (83)
486 TIGR01503 MthylAspMut_E methyl 27.7 2.4E+02 0.0052 27.4 6.8 45 298-345 70-114 (480)
487 PF04090 RNA_pol_I_TF: RNA pol 27.4 3.9E+02 0.0084 22.7 10.9 31 352-382 41-71 (199)
488 PF04090 RNA_pol_I_TF: RNA pol 27.3 3.9E+02 0.0084 22.7 12.2 59 72-132 46-105 (199)
489 TIGR03581 EF_0839 conserved hy 27.2 2E+02 0.0042 24.7 5.5 33 333-366 137-177 (236)
490 PHA03100 ankyrin repeat protei 27.1 6.1E+02 0.013 24.9 11.6 242 183-455 37-309 (480)
491 KOG1308 Hsp70-interacting prot 27.0 43 0.00094 30.7 1.9 97 149-250 124-220 (377)
492 PF01475 FUR: Ferric uptake re 26.8 1.8E+02 0.0039 22.0 5.1 51 69-120 9-59 (120)
493 PF02607 B12-binding_2: B12 bi 26.3 1.9E+02 0.0041 19.7 4.8 30 435-464 14-43 (79)
494 COG2256 MGS1 ATPase related to 26.2 5.9E+02 0.013 24.5 19.2 105 139-262 192-299 (436)
495 PF09670 Cas_Cas02710: CRISPR- 26.1 5.8E+02 0.013 24.3 12.5 51 224-275 143-197 (379)
496 KOG3364 Membrane protein invol 26.0 3.3E+02 0.0072 21.5 9.8 67 384-450 29-99 (149)
497 PHA03100 ankyrin repeat protei 25.9 6.4E+02 0.014 24.7 10.3 237 217-480 37-303 (480)
498 PF06957 COPI_C: Coatomer (COP 25.5 6.3E+02 0.014 24.5 10.3 25 253-277 306-330 (422)
499 KOG2062 26S proteasome regulat 25.0 6.5E+02 0.014 26.3 9.4 142 108-256 506-648 (929)
500 PF06855 DUF1250: Protein of u 24.8 1.2E+02 0.0025 18.5 3.0 43 89-131 1-43 (46)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.6e-62 Score=499.42 Aligned_cols=423 Identities=15% Similarity=0.169 Sum_probs=394.1
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
.++...+..+...+++.|+.++|+++|++|.+.+-++++..+++.++..|.+.|.+++|..+|+.|.. ++..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHH
Confidence 34455555666777889999999999999998755677888889999999999999999999998874 4677899
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHH
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGF 222 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~ 222 (500)
.++.+|++.|++++|.++|++|.+.+ ..||..+|+.+|.+|++.|++++|.++|++|.+ ++.||..+|+.||.+|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~G----l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy 517 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAG----LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC 517 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999987 688999999999999999999999999999996 8999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCCHHH
Q 041822 223 KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER--VACLPSLQTITTLIHGAGLVRNIHQ 300 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~~~~~~ 300 (500)
++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++
T Consensus 518 ~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597 (1060)
T ss_pred HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999986 6789999999999999999999999
Q ss_pred HHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 041822 301 ARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380 (500)
Q Consensus 301 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 380 (500)
|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 041822 381 GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASY 460 (500)
Q Consensus 381 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 460 (500)
.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHhhccCCCCcccc
Q 041822 461 RMLQRYLVQANANEKLEDLDRMIKNLQAVLPPPTRQQ 497 (500)
Q Consensus 461 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~hy 497 (500)
+.++.+|.+.|+.+.|.++++.|.+.+. .|+...|
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi--~pd~~ty 792 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGI--KPNLVMC 792 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 9999999999999999999999987653 4554433
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.9e-62 Score=496.83 Aligned_cols=414 Identities=14% Similarity=0.191 Sum_probs=326.8
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
|+...|+.++..|++.|+.+.|.++|+.|.+. |+.||..+|+.+|.+|++.|++++|.++|++|.+.+ ..++..+|+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHH
Confidence 56677778888888888888888888887776 677888888888888888888888888888887754 3456677888
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh---CCCCCHHhHHHHHHH
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS---RFAPNNKTMNILLLG 221 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~~~~l~~~ 221 (500)
++.+|++.|++++|.++|++|...+ ..||..+|+.+|.+|++.|++++|.++|++|.+ ++.||..+|+.++.+
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~G----v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKN----VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 8888888888888888888887765 677888888888888888888888888888863 577888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 041822 222 FKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQA 301 (500)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 301 (500)
|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 302 RQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888888888888788888888888888888888888888888888888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----C-------------------CCH
Q 041822 382 KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS----R-------------------GRW 438 (500)
Q Consensus 382 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~-------------------g~~ 438 (500)
|+.||..||+.++.+|++.|+++.|.+++++|.+.|+.||..+|++++..|.+ . +..
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~ 828 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT 828 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH
Confidence 88888888888888888888888888888888888888888888887755321 1 223
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHH
Q 041822 439 EEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIK 484 (500)
Q Consensus 439 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 484 (500)
++|..+|++|.+.|+.||..||+.++.++...+..+.+..+++.|.
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 5678888888888888888888888776666666655555554443
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.4e-59 Score=473.34 Aligned_cols=410 Identities=14% Similarity=0.167 Sum_probs=362.6
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
+...++.++..+.+.|++++|+++|++|....++.||..+|+.++.+|++.++++.+.+++..|.+.+ ..++..+++.+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 34467788888899999999999999998776678899999999999999999999999999988865 34567788899
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCC--------------
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAP-------------- 210 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~-------------- 210 (500)
+..|++.|++++|.++|++|. .+|..+||+++.+|++.|++++|.++|++|.+ +..|
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~--------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP--------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC--------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 999999999999999999883 46888999999999999999999999999864 4544
Q ss_pred ---------------------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 041822 211 ---------------------NNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRL 269 (500)
Q Consensus 211 ---------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 269 (500)
|..+|+.|+.+|++.|++++|.++|++|.+ +|..+||.+|.+|++.|++++|+++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHH
Confidence 455567778888888888888888888853 5889999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 041822 270 FEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIG 349 (500)
Q Consensus 270 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 349 (500)
|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++||++|+++|++++|.++|++|.+
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHH-CCCCCCHhHHHHH
Q 041822 350 HDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLID-RGFCPHGHALDLL 428 (500)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l 428 (500)
||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 599999999999999999999999999999999999999999999999999999999999999986 6999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhccCCCCccccc
Q 041822 429 VTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPPPTRQQV 498 (500)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~hyv 498 (500)
+++|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+.+.+..+.+.+. +..|....+|+
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~---~~~p~~~~~y~ 532 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY---GMGPEKLNNYV 532 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---CCCCCCCcchH
Confidence 99999999999999999877 678999999999999988888888888877664 33455666665
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-57 Score=472.90 Aligned_cols=419 Identities=16% Similarity=0.185 Sum_probs=285.7
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
.++...|+.++..+++.|++++|+++|+.|... |+.||..||+.++++|++.+++..+.+++..+.+.+ ..++..+++
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~n 226 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVN 226 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC-CCcccchHh
Confidence 466778999999999999999999999999876 777877777666555555544444444444444432 122333444
Q ss_pred HHHHHHhccccHHHHHHHH-------------------------------HHHHHHHhccccCCChhhHHHHHHHHHcCC
Q 041822 144 IMLSRISKFQSYEETLEAF-------------------------------DRMEREIFVGIRKFGSEEFNVLLQAFCTQK 192 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 192 (500)
.++..|++.|++++|.++| ++|...+ ..||..+|+.++.+|++.|
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g----~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS----VDPDLMTITSVISACELLG 302 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCChhHHHHHHHHHHhcC
Confidence 4444455555555555544 4444443 3444445555555555555
Q ss_pred CHHHHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041822 193 EMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFE 271 (500)
Q Consensus 193 ~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (500)
+++.|.+++..|.+ |+.||..+|+.|+.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|+++|+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 55555555544443 444555555555555555555555555555543 2355555555556666666666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 041822 272 EMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHD 351 (500)
Q Consensus 272 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 351 (500)
+|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.||.+|+++|++++|.++|++|.+ +|
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d 454 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KD 454 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CC
Confidence 66666666666666666666666666666666666666666666666667777777777777777777776654 36
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCC-------------
Q 041822 352 NVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF------------- 418 (500)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------- 418 (500)
..+|+.+|.+|++.|+.++|+++|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 66777777777777777777777777765 5788888888888877777777777777777666554
Q ss_pred -----------------CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHH
Q 041822 419 -----------------CPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDR 481 (500)
Q Consensus 419 -----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 481 (500)
.+|..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..+++.++++
T Consensus 534 y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 456777889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCccccc
Q 041822 482 MIKNLQAVLPPPTRQQV 498 (500)
Q Consensus 482 ~~~~~~~~~~p~~~hyv 498 (500)
.|.+..+ ..|+.+||.
T Consensus 614 ~M~~~~g-i~P~~~~y~ 629 (857)
T PLN03077 614 SMEEKYS-ITPNLKHYA 629 (857)
T ss_pred HHHHHhC-CCCchHHHH
Confidence 9997777 467888885
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.1e-56 Score=462.22 Aligned_cols=414 Identities=16% Similarity=0.189 Sum_probs=342.5
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
.++...|+.++..|.+.|++++|+++|+.|... |+.||..+|+.++.+|++.|+++.|.+++..+.+.+ ..++..+++
T Consensus 250 ~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n 327 (857)
T PLN03077 250 RRDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCN 327 (857)
T ss_pred CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHH
Confidence 456678999999999999999999999999876 789999999999999999999999999999998865 456778899
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHH
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGF 222 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~ 222 (500)
.++..|++.|++++|.++|++|. .+|..+||++|.+|++.|++++|.++|++|.+ ++.||..||+.++.+|
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~--------~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRME--------TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCC--------CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 99999999999999999999983 56888999999999999999999999999986 8899999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--------------------------
Q 041822 223 KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV-------------------------- 276 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------------------- 276 (500)
++.|+++.|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|++|.+.
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999888888888888888888888888877542
Q ss_pred ----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 041822 277 ----ACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDN 352 (500)
Q Consensus 277 ----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 352 (500)
++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.+|..++++||++|+++|++++|.++|+++ .+|.
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~ 554 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDV 554 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCCh
Confidence 2344444444444444444444444455555555555555555566667777777777777777776 4688
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHH-HCCCCCCHhHHHHHHHH
Q 041822 353 VTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLI-DRGFCPHGHALDLLVTG 431 (500)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~ 431 (500)
.+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|++++++
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 67999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhccCCCCccccc
Q 041822 432 LCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPPPTRQQV 498 (500)
Q Consensus 432 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~hyv 498 (500)
|++.|++++|.+++++| .+.||..+|++|+.+|...|+.+.++...+.+.+. .|.+...|+
T Consensus 635 l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l---~p~~~~~y~ 695 (857)
T PLN03077 635 LGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFEL---DPNSVGYYI 695 (857)
T ss_pred HHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCCCcchHH
Confidence 99999999999999988 57889999988888888777777777666555543 455555554
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.9e-56 Score=449.95 Aligned_cols=411 Identities=15% Similarity=0.162 Sum_probs=371.9
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
.++...++.++..+.+.++.+.|.+++..+.+. |+.||..+|+.++..|++.|++++|.++|++|.+ ++..+|+
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n 193 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASWG 193 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHH
Confidence 467778888888888888888888888888776 7888888888888888888888888888888864 2445688
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhcc-------------------------------ccCCChhhHHHHHHHHHcCC
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVG-------------------------------IRKFGSEEFNVLLQAFCTQK 192 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~ll~~~~~~~ 192 (500)
.++.+|++.|++++|+++|++|.+.+..+ ...+|..+||+|+.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 88888888888888888888887654211 13567778899999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041822 193 EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEE 272 (500)
Q Consensus 193 ~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 272 (500)
++++|.++|++|.+ +|..+||.|+.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..
T Consensus 274 ~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~ 350 (697)
T PLN03081 274 DIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350 (697)
T ss_pred CHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999974 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 041822 273 MERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDN 352 (500)
Q Consensus 273 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 352 (500)
|.+.|+.||..+|+.++++|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 351 m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred HHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 99999999999999999999999999999999999975 68899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 041822 353 VTYHTMFFGLMKSSGLEGVCKLYDRMIE-GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTG 431 (500)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 431 (500)
.||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.++++.|++++|.+++++| ++.|+..+|++++.+
T Consensus 427 ~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a 503 (697)
T PLN03081 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA 503 (697)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH
Confidence 9999999999999999999999999985 699999999999999999999999999998765 678999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCchhHHHHHHHHHHHhhccCCC
Q 041822 432 LCSRGRWEEAFECSKQMLVRRRQVS-EASYRMLQRYLVQANANEKLEDLDRMIKNLQAVLPP 492 (500)
Q Consensus 432 ~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 492 (500)
|...|+++.|..+++++. ++.|+ ..+|..+++.|.+.|++++|.++++.|++.+-..+|
T Consensus 504 ~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 999999999999999997 45564 679999999999999999999999999988754444
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=5.4e-26 Score=241.74 Aligned_cols=401 Identities=12% Similarity=0.108 Sum_probs=238.7
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
...++..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+..|. +...+..+
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l 539 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK--NLRAILAL 539 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHH
Confidence 34566677777888888888888888877643 455666777777777888888888888887776554 34556666
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
...+.+.|+.++|...|+++... .+.+...+..++..+.+.|++++|..+++.+.+..+.+..+|..+..++...
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAEL-----NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 77777777777777777776655 3445566666677777777777777777776665566666677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 041822 226 GDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLF 305 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 305 (500)
|++++|...|+.+.+.. +.+...+..+..++.+.|++++|..+|+++.+.. +.+..++..+...+...|++++|.+++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777776666543 2245556666666666666666666666666543 233455555566666666666666666
Q ss_pred HhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 041822 306 DEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP 385 (500)
Q Consensus 306 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 385 (500)
+.+.+.+ +.+...+..+...+...|++++|.+.|+.+...+. +..++..+...+.+.|++++|.+.++++.+.. +.
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~ 768 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN 768 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 6655543 23444555555555555555555555555554432 22334444455555555555555555544432 22
Q ss_pred CHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHH---------------------------------HHHHHH
Q 041822 386 KTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALD---------------------------------LLVTGL 432 (500)
Q Consensus 386 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------------------------~li~~~ 432 (500)
+...+..+...|...|+.++|.+.|+++.+.. +.+..+++ .+...+
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 34444444445555555555555555554432 22333444 444455
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHH
Q 041822 433 CSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMI 483 (500)
Q Consensus 433 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 483 (500)
...|++++|.++++++.+.+.. +..++..+..++.+.|+.++|.++++.|
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555544332 4445555555555555555555555444
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.4e-25 Score=236.72 Aligned_cols=401 Identities=9% Similarity=0.041 Sum_probs=347.0
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHH
Q 041822 68 LVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLS 147 (500)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (500)
.....++..+.+.|++++|+++++.+... .+.++.++..+...+...|++++|.+.|+++.+..|. +...+..+..
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~ 507 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD--FFPAAANLAR 507 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHH
Confidence 44456677888999999999999999875 4678889999999999999999999999999987665 4456777888
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD 227 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~ 227 (500)
.+...|++++|.+.|+++... .+.+..++..+...+.+.|+.++|..+++++.+..+.+...+..++..+.+.|+
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTI-----DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCC
Confidence 899999999999999999876 467888999999999999999999999999988777788899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 041822 228 VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDE 307 (500)
Q Consensus 228 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 307 (500)
+++|..+++.+.+.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+...+...|++++|..++++
T Consensus 583 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 583 LKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998763 4578899999999999999999999999998765 34677888999999999999999999999
Q ss_pred chhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 041822 308 MPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKT 387 (500)
Q Consensus 308 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 387 (500)
+.+.. +.+..++..+...+...|++++|.++++.+.+.+.. +...+..+...+...|++++|.+.|+++... .|+.
T Consensus 661 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 736 (899)
T TIGR02917 661 ALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSS 736 (899)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCc
Confidence 98874 446889999999999999999999999999987643 6778888999999999999999999999876 4555
Q ss_pred HHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041822 388 RTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYL 467 (500)
Q Consensus 388 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 467 (500)
.++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLY 814 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 777889999999999999999999999864 4577889999999999999999999999998764 34566677777777
Q ss_pred HHcCchhHHHHHHHHHHHh
Q 041822 468 VQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~ 486 (500)
...|+ ++|..+++.....
T Consensus 815 ~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKL 832 (899)
T ss_pred HhcCc-HHHHHHHHHHHhh
Confidence 77777 5566655555443
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=7.1e-20 Score=195.98 Aligned_cols=401 Identities=9% Similarity=-0.002 Sum_probs=276.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHH---------
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSM--------- 142 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--------- 142 (500)
.....+...|++++|+..|+.+++.. |.+...+..+..++.+.|++++|+..|++..+..|.......+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 34566778899999999999999863 5678899999999999999999999999999887765432222
Q ss_pred ---HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHH
Q 041822 143 ---SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILL 219 (500)
Q Consensus 143 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~ 219 (500)
......+.+.|++++|+..|++.... .+.+...+..+...+...|++++|++.|+++.+..+.+...+..+.
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-----~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQV-----DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 22344577899999999999999887 4667888899999999999999999999999975556666665555
Q ss_pred HHHH------------------------------------------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 220 LGFK------------------------------------------ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 220 ~~~~------------------------------------------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
..+. ..|++++|...|++..+.. +-+...+..+...|
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 5443 3444455555555444432 11233444444455
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHh---------hHHHHHHHHH
Q 041822 258 CKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIG---------AYNAMISSLI 328 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~li~~~~ 328 (500)
.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 55555555555555544422 1122222222223344455555555554443221111111 1123345566
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHH
Q 041822 329 RCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLN 408 (500)
Q Consensus 329 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 408 (500)
..|+.++|..+++. ...+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...+...|+.++|.+
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 67777777777661 12355566778888999999999999999998753 3347788889999999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHHcCchhHHHHHHHHH
Q 041822 409 LWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRR--QV---SEASYRMLQRYLVQANANEKLEDLDRMI 483 (500)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 483 (500)
.++.+.+.. +.+...+..+..++...|++++|.++++++..... .| +...+..+...+...|+.++|...++..
T Consensus 659 ~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 659 QLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999887643 23455667788889999999999999999986432 12 2245666788899999999999998877
Q ss_pred HHhhc
Q 041822 484 KNLQA 488 (500)
Q Consensus 484 ~~~~~ 488 (500)
-...+
T Consensus 738 l~~~~ 742 (1157)
T PRK11447 738 MVASG 742 (1157)
T ss_pred HhhcC
Confidence 65444
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2.1e-21 Score=185.56 Aligned_cols=300 Identities=14% Similarity=0.108 Sum_probs=221.4
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC-C---CHHhHHHHHHHHH
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFA-P---NNKTMNILLLGFK 223 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~---~~~~~~~l~~~~~ 223 (500)
.+...|++++|...|+++.+. .+.+..++..+...+...|++++|..+++.+.+... + ...++..+...+.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV-----DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 355667788888888887765 355666778888888888888888888888775211 1 1245777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHH
Q 041822 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS----LQTITTLIHGAGLVRNIH 299 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~ 299 (500)
+.|+++.|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 8888888888888887652 34567788888888888888888888888877552222 123455666777888888
Q ss_pred HHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 300 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
+|.+.|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+.......++.++.+|...|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888887754 234567777788888888888888888888776433334567778888888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCCCC
Q 041822 380 EGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS---RGRWEEAFECSKQMLVRRRQVS 456 (500)
Q Consensus 380 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~ 456 (500)
+. .|+...+..+...+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..++++|.++++.|+
T Consensus 277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 65 466566677888888888888888888888775 4777778777776664 4588888888888888777666
Q ss_pred HH
Q 041822 457 EA 458 (500)
Q Consensus 457 ~~ 458 (500)
+.
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 55
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.3e-20 Score=180.00 Aligned_cols=298 Identities=15% Similarity=0.060 Sum_probs=247.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS---VVTYNIRIDGYCKK 260 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 260 (500)
....+...|++++|...|.++.+..+.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344567889999999999999986677788999999999999999999999999987643222 35678889999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCC----HhhHHHHHHHHHhcCCHHHH
Q 041822 261 GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPD----IGAYNAMISSLIRCRDLNAA 336 (500)
Q Consensus 261 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a 336 (500)
|++++|.++|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998763 45678899999999999999999999999988653332 22456778888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHC
Q 041822 337 MELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR 416 (500)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 416 (500)
...|+++.+.... +...+..+...+.+.|++++|.++++++.+.+......++..+..++...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999876433 456778888999999999999999999987532222466788999999999999999999999986
Q ss_pred CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCchhHHHHHHHHHHHhh
Q 041822 417 GFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQ---ANANEKLEDLDRMIKNLQ 487 (500)
Q Consensus 417 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~ 487 (500)
. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.+..
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 4 66667788999999999999999999999865 6898899888877764 457888888777776544
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=6.2e-20 Score=168.17 Aligned_cols=334 Identities=13% Similarity=0.071 Sum_probs=165.6
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc------------
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFV------------ 171 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------ 171 (500)
++|..+..++-..|++++|+..++.+.+..|+.. ..|..+..++...|+.+.|.+.|.+..+....
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fi--da~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFI--DAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhh--HHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 4455555555555666666666666555544422 34555555555555555555555544433100
Q ss_pred -----------------cccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 041822 172 -----------------GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMF 234 (500)
Q Consensus 172 -----------------~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 234 (500)
...+--..+|..|...+-..|+...|++-|++.++-.+--...|-.|...|...+.++.|...
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 001222334444444444445555555544444432222334444455555555555555544
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhchhCC
Q 041822 235 YHEMVLRGFRP-SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS-LQTITTLIHGAGLVRNIHQARQLFDEMPKRN 312 (500)
Q Consensus 235 ~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 312 (500)
|.+.... .| ....+..+...|...|..+-|+..|++..+.. |+ ...|+.|..++-..|+..+|.+.|.+.....
T Consensus 275 Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 275 YLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 4444433 22 23344444444455555555555555554432 32 3345555555555555555555555555442
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHH
Q 041822 313 LKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVV 391 (500)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~ 391 (500)
..-....+.|...|...|.+++|..+|....+.... -...++.|...|-++|++++|+..|++.++ +.|+ ...|+
T Consensus 351 -p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~ 426 (966)
T KOG4626|consen 351 -PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALS 426 (966)
T ss_pred -CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHH
Confidence 123344555555555555555555555554443221 223445555555555555555555555543 3444 44555
Q ss_pred HHHHHHHHcCCHhhHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041822 392 MLMKFFCVNFRVDLGLNLWGYLIDRGFCPH-GHALDLLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 392 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
.+...|-..|+++.|.+.+.+.+..+ |. ...++.|...|...|+..+|+.-+++..
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 55555555555555555555555532 32 2345555556666666666666666555
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=3e-18 Score=172.45 Aligned_cols=396 Identities=12% Similarity=0.051 Sum_probs=225.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHH
Q 041822 70 ENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRI 149 (500)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 149 (500)
+......+.+.|++++|++.|+.++.. .|++..|..+..++.+.|++++|++.++...+..|+ ....+..+..+|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~--~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD--YSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHH
Confidence 345667788899999999999999975 478888999999999999999999999999998665 456788889999
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCH-----------------
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNN----------------- 212 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~----------------- 212 (500)
...|++++|+..|..+...+ +.+......++..+.. ..+........+..+++.
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~-----~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIID-----GFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhC-----CCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCc
Confidence 99999999998776554321 1111111111111100 000000111000000000
Q ss_pred ----------------HhHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 041822 213 ----------------KTMNILLLGF---KESGDVTAMEMFYHEMVLRG-FRP-SVVTYNIRIDGYCKKGCFGDAMRLFE 271 (500)
Q Consensus 213 ----------------~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~g-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (500)
..+..+...+ ...+++++|...|+...+.+ ..| +...|+.+...+...|++++|+..|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0000000000 11245566666666666543 122 33445555566666666666666666
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 041822 272 EMERVACLPS-LQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGH 350 (500)
Q Consensus 272 ~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 350 (500)
+..+.. |+ ...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|++..+....
T Consensus 356 kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~- 431 (615)
T TIGR00990 356 KSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD- 431 (615)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-
Confidence 666543 33 4455556666666666666666666665543 224556666666666666666666666666655332
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHh------H
Q 041822 351 DNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGH------A 424 (500)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~ 424 (500)
+...+..+...+.+.|++++|+..|++..+.. +-+...++.+...+...|++++|.+.|+..++.....+.. .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 34455555666666666666666666665431 2225555666666666666666666666666532111110 1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Q 041822 425 LDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKN 485 (500)
Q Consensus 425 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 485 (500)
++..+..+...|++++|.+++++..+... -+...+..+...+...|+.++|..+++....
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11112223334666666666666654321 1223455666666666666666666555433
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=5e-20 Score=168.73 Aligned_cols=349 Identities=13% Similarity=0.087 Sum_probs=286.6
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHH-----
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKS----- 141 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----- 141 (500)
...+.-+...+...|+..+|+.+++.+.+.. +-..+.|..+..++...|+.+.|.+.|.+..+..|+.....+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 4445567788889999999999999999864 456778999999999999999999999888887665433211
Q ss_pred ---------------------------HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCH
Q 041822 142 ---------------------------MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEM 194 (500)
Q Consensus 142 ---------------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 194 (500)
|..+...+-..|+...|+.-|++..+. .|.-..+|-.|...|...+.+
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-----dP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-----DPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC-----CCcchHHHhhHHHHHHHHhcc
Confidence 222333345567777777777777655 355578899999999999999
Q ss_pred HHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 195 KEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS-VVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 195 ~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
+.|...|.+...--+-....+..|...|...|.+|-|...|++.++. .|+ ...|+.|..++-..|++.+|...|.+.
T Consensus 269 d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99999999998755667889999999999999999999999999987 444 678999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H
Q 041822 274 ERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHD-N 352 (500)
Q Consensus 274 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~ 352 (500)
.... +--....+.|...|...|.+++|..+|....+-. +--...++.|...|-..|++++|+..|++.... .|+ .
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fA 422 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFA 422 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHH
Confidence 8864 3346678899999999999999999999988853 223567899999999999999999999998875 444 4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 041822 353 VTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPH-GHALDLLVT 430 (500)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~ 430 (500)
..|+.+...|-..|+...|...+.+.+.. .|. ...++.|...+-..|++.+|++-++..++. +|| ...|..++.
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh 498 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLH 498 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHH
Confidence 57888999999999999999999998874 566 678889999999999999999999999985 465 345656665
Q ss_pred HH
Q 041822 431 GL 432 (500)
Q Consensus 431 ~~ 432 (500)
++
T Consensus 499 ~l 500 (966)
T KOG4626|consen 499 CL 500 (966)
T ss_pred HH
Confidence 54
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=4.2e-18 Score=182.44 Aligned_cols=400 Identities=11% Similarity=0.015 Sum_probs=248.4
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc------------------cHH
Q 041822 79 AHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLL------------------TLK 140 (500)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------------------~~~ 140 (500)
..++.++|++.++.+.+.. |.+...+..+...+...|+.++|++.++++.+..+... ...
T Consensus 159 ~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~ 236 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVA 236 (1157)
T ss_pred CCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHH
Confidence 3567777777777777653 44566666777777777777777777777644211000 000
Q ss_pred HH----------------------------------HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHH
Q 041822 141 SM----------------------------------SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQ 186 (500)
Q Consensus 141 ~~----------------------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 186 (500)
.+ ......+...|++++|+..|++..+. .|.+..++..+..
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~-----~P~~~~a~~~Lg~ 311 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA-----NPKDSEALGALGQ 311 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Confidence 00 01123345567777777777777765 3556777777777
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCC--HHhH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041822 187 AFCTQKEMKEARSVFVKLLSRFAPN--NKTM------------NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNI 252 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 252 (500)
++.+.|++++|+..|++..+..+.+ ...| ......+.+.|++++|...|+++.+.. +.+...+..
T Consensus 312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~ 390 (1157)
T PRK11447 312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLG 390 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 8888888888888887776532211 1111 122345567777788888877777663 234556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH------------------------------------------HH
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTL------------------------------------------IH 290 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l------------------------------------------l~ 290 (500)
+...+...|++++|++.|++..+.. +.+...+..+ ..
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~ 469 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE 469 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 7777888888888888888777643 1122222222 22
Q ss_pred HHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 041822 291 GAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEG 370 (500)
Q Consensus 291 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (500)
.+...|++++|++.|++..+... -+...+..+...|.+.|++++|...++++.+.... +...+..+...+...|+.++
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHH
Confidence 33455677777777777766532 24556666777777777777777777776654322 22222222222233333333
Q ss_pred HHHHHHHHHhC---------------------------------------CCCCCHHHHHHHHHHHHHcCCHhhHHHHHH
Q 041822 371 VCKLYDRMIEG---------------------------------------KFVPKTRTVVMLMKFFCVNFRVDLGLNLWG 411 (500)
Q Consensus 371 a~~~~~~~~~~---------------------------------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 411 (500)
|...++.+... ..+.+...+..+...+.+.|++++|...++
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~ 627 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQ 627 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33333221100 012334455566777788899999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCchhHHHHHHHHHHHhhccC
Q 041822 412 YLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS-EASYRMLQRYLVQANANEKLEDLDRMIKNLQAVL 490 (500)
Q Consensus 412 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (500)
..++.. +.+...+..++..|...|++++|.+.++...+. .|+ ...+..+..++...|+.++|..+++.+.......
T Consensus 628 ~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 628 RVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 988864 335778888899999999999999999987753 333 4455667788889999999999998887765433
Q ss_pred CC
Q 041822 491 PP 492 (500)
Q Consensus 491 ~p 492 (500)
+|
T Consensus 705 ~~ 706 (1157)
T PRK11447 705 PP 706 (1157)
T ss_pred Cc
Confidence 43
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=8.3e-19 Score=175.83 Aligned_cols=362 Identities=9% Similarity=0.020 Sum_probs=283.4
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
++..+.+.|++.+|+.+++..+... +-+...+..++.++...|++++|...++.+.+..|+. ...+..+...+...
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~--~~a~~~la~~l~~~ 123 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ--PEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHc
Confidence 3455667899999999999998863 5566677777778888999999999999999988775 45677788889999
Q ss_pred ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 041822 153 QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAME 232 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 232 (500)
|++++|...+++.... .|.+...+..+...+...|++++|...++.+....+.+...+..+ ..+...|++++|.
T Consensus 124 g~~~~Ai~~l~~Al~l-----~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 124 KQYATVADLAEQAWLA-----FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred CCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHH
Confidence 9999999999999876 467788999999999999999999999998876445555555444 3478899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHhc
Q 041822 233 MFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQ----ARQLFDEM 308 (500)
Q Consensus 233 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~ 308 (500)
..++.+.+....++...+..+..++...|++++|+..+++..+.. +.+...+..+...+...|++++ |...|++.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999998876433445555666788899999999999999999865 4456778888999999999885 89999999
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-
Q 041822 309 PKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKT- 387 (500)
Q Consensus 309 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~- 387 (500)
.+.. +.+...+..+...+.+.|++++|...+++..+.... +...+..+..++.+.|++++|...|+++... .|+.
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~ 352 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTS 352 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccch
Confidence 8874 336778999999999999999999999999887544 5566777889999999999999999998875 4553
Q ss_pred HHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHH----HHHHHHhcCCCHHHHHHHHHHHH
Q 041822 388 RTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALD----LLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 388 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
..+..+..++...|+.++|...|+...+....--...|. .+-.++...+..++......+..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 334445667889999999999999998753221122332 23333334444444434555543
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=5.3e-19 Score=177.26 Aligned_cols=333 Identities=9% Similarity=-0.035 Sum_probs=277.6
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHH
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV 183 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (500)
.-...++..+.+.|++++|..+++......|...+ .+..++.+....|++++|...|+++... .|.+...+..
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~--~l~~l~~~~l~~g~~~~A~~~l~~~l~~-----~P~~~~a~~~ 115 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD--LLRRWVISPLASSQPDAVLQVVNKLLAV-----NVCQPEDVLL 115 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh--HHHHHhhhHhhcCCHHHHHHHHHHHHHh-----CCCChHHHHH
Confidence 34556778889999999999999999998777544 5556666777899999999999999887 5778889999
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 263 (500)
+...+.+.|++++|...++++.+-.+.+...+..+...+...|++++|...+..+...... +...+..+ ..+...|++
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCH
Confidence 9999999999999999999999866778889999999999999999999999988766322 33344333 347889999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHH----HHHH
Q 041822 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA----AMEL 339 (500)
Q Consensus 264 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~ 339 (500)
++|...++.+.+....++...+..+..++...|++++|...++++.+.+ +.+...+..+...|...|++++ |...
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 9999999998876533455556666788899999999999999999875 3467788889999999999986 8999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCC
Q 041822 340 MDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418 (500)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 418 (500)
|++..+.... +...+..+...+.+.|++++|...+++..+. .|+ ...+..+..++...|++++|...++.+.+.+
T Consensus 273 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~- 348 (656)
T PRK15174 273 WRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK- 348 (656)
T ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 9999887544 6778889999999999999999999999875 444 6667778889999999999999999999854
Q ss_pred CCCH-hHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 419 CPHG-HALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 419 ~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
|+. ..+..+..++...|+.++|...|++..+.
T Consensus 349 -P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 349 -GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 443 33444567889999999999999999865
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=7.7e-18 Score=172.52 Aligned_cols=410 Identities=9% Similarity=0.039 Sum_probs=302.9
Q ss_pred CCCCChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHH
Q 041822 61 TTPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLK 140 (500)
Q Consensus 61 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 140 (500)
..+.++..+..- .++..-.|+.++|++.+..+.... +.+...+..+...+...|++++|.++++...+..|.. ..
T Consensus 10 ~~~~~~~~~~d~-~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~--~~ 84 (765)
T PRK10049 10 KSALSNNQIADW-LQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN--DD 84 (765)
T ss_pred ccCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HH
Confidence 345566666543 355567899999999999988632 4566678899999999999999999999999887664 34
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLL 220 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~ 220 (500)
....+...+...|++++|+..++++.+. .|.+.. +..+..++...|+.++|+..++++.+..|.+...+..+..
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~-----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSG-----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5667778889999999999999999877 466777 8889999999999999999999999877778888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCh---hHHHHHHHHHHHc-CCCCCHH-H
Q 041822 221 GFKESGDVTAMEMFYHEMVLRGFRPSV------VTYNIRIDGYC-----KKGCF---GDAMRLFEEMERV-ACLPSLQ-T 284 (500)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-~~~~~~~-~ 284 (500)
++...+..+.|...++.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 88888999999988876553 2221 11222233222 22334 7788888888854 1223221 1
Q ss_pred H----HHHHHHHHccCCHHHHHHHHHhchhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHH
Q 041822 285 I----TTLIHGAGLVRNIHQARQLFDEMPKRNLK-PDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGH---DNVTYH 356 (500)
Q Consensus 285 ~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~ 356 (500)
+ ...+.++...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++.+..... ......
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 1 11134456779999999999999887532 322 22335778999999999999999987653221 134456
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC-----------CCCC---HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCH
Q 041822 357 TMFFGLMKSSGLEGVCKLYDRMIEGK-----------FVPK---TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHG 422 (500)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 422 (500)
.+..++...|++++|..+++.+.+.. -.|+ ...+..+...+...|++++|+++++++.... +.+.
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~ 393 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQ 393 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 66778889999999999999988642 1123 2344566677888899999999999998864 4457
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCchhHHHHHHHHHHHhhc
Q 041822 423 HALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSE-ASYRMLQRYLVQANANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (500)
..+..+...+...|++++|++.+++..+. .|+. ..+......+...|+++.|+.+++.+.....
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 78888999999999999999999998864 4653 4445666788889999999999888877643
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=7.4e-17 Score=165.33 Aligned_cols=383 Identities=9% Similarity=-0.017 Sum_probs=288.4
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.+...+..+...+...|++++|+++|+.+++.. |.+...+..++.++...|++++|...++++.+..|.... +..
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~---~~~ 121 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN---LLA 121 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHH
Confidence 445567788888999999999999999998863 567778888999999999999999999999998776543 777
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCH------HhHHHH
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNN------KTMNIL 218 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~------~~~~~l 218 (500)
+..++...|+.++|+..++++.+. .|.+...+..+..++...|..+.|++.++.... .|+. .....+
T Consensus 122 la~~l~~~g~~~~Al~~l~~al~~-----~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~ 194 (765)
T PRK10049 122 LAYVYKRAGRHWDELRAMTQALPR-----APQTQQYPTEYVQALRNNRLSAPALGAIDDANL--TPAEKRDLEADAAAEL 194 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC--CHHHHHHHHHHHHHHH
Confidence 788899999999999999999987 467788888889999999999999999987764 2221 112222
Q ss_pred HHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHH
Q 041822 219 LLGFK-----ESGDV---TAMEMFYHEMVLR-GFRPSVV-TY----NIRIDGYCKKGCFGDAMRLFEEMERVACL-PSLQ 283 (500)
Q Consensus 219 ~~~~~-----~~~~~---~~a~~~~~~~~~~-g~~~~~~-~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~ 283 (500)
+.... ..+++ ++|...++.+.+. ...|+.. .+ ...+.++...|++++|+..|+++.+.+.. |+.
T Consensus 195 ~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~- 273 (765)
T PRK10049 195 VRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW- 273 (765)
T ss_pred HHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-
Confidence 33222 12234 6788888888854 2233321 11 11134456779999999999999987632 322
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhchhCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------C
Q 041822 284 TITTLIHGAGLVRNIHQARQLFDEMPKRNLKP---DIGAYNAMISSLIRCRDLNAAMELMDEMEEKRI-----------G 349 (500)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~ 349 (500)
.-..+..+|...|++++|+..|+++.+..... .......+..++...|++++|..+++.+..... .
T Consensus 274 a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~ 353 (765)
T PRK10049 274 AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI 353 (765)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence 22225678999999999999999987653211 134566677788999999999999999987632 1
Q ss_pred CC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHH
Q 041822 350 HD---NVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALD 426 (500)
Q Consensus 350 ~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 426 (500)
|+ ...+..+...+...|+.++|++.++++.... +-+...+..+...+...|++++|++.+++.++.. +-+...+-
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~ 431 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEV 431 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHH
Confidence 23 2244567778889999999999999998752 3347778888889999999999999999999854 23456666
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 427 LLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQ 464 (500)
Q Consensus 427 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 464 (500)
..+..+...|++++|..+++++.+. .|+......+-
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 7777889999999999999999964 45555433333
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=1.2e-15 Score=153.60 Aligned_cols=395 Identities=10% Similarity=0.016 Sum_probs=248.1
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCCCH-HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHH
Q 041822 78 AAHSNGLKALEFFKFTLQHPHFTPTP-DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYE 156 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (500)
.+.|++..|++.|+++++.. |+. .....++..++..|+.++|+..+++.. .|..........+...|...|+++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~---P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG---PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC---ccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 45566666666666655542 221 112255555555566666666666555 233333334444444555556666
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYH 236 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 236 (500)
+|+++|+++.+. .|.+...+..++..+.+.++.++|++.++++.+. .|+...+..++..+...++..+|...++
T Consensus 120 ~Aiely~kaL~~-----dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 120 QALALWQSSLKK-----DPTNPDLISGMIMTQADAGRGGVVLKQATELAER-DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred HHHHHHHHHHhh-----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 666666666555 3444555555555556666666666666665542 2233333333333333344434555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChh------------------------------------------------HHHH
Q 041822 237 EMVLRGFRPSVVTYNIRIDGYCKKGCFG------------------------------------------------DAMR 268 (500)
Q Consensus 237 ~~~~~g~~~~~~~~~~li~~~~~~g~~~------------------------------------------------~a~~ 268 (500)
++.+.. +-+...+..++.+..+.|-.. .|+.
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 555552 112333333333333333322 2333
Q ss_pred HHHHHHHc-CCCCCH-H----HHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 269 LFEEMERV-ACLPSL-Q----TITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDE 342 (500)
Q Consensus 269 ~~~~m~~~-~~~~~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 342 (500)
-++.+... +-.|.. . +..-.+-++...+++.++++.|+.+...+.+.-..+-..+.++|...++.++|+.+|+.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 33333331 111321 1 22234567788999999999999999988665667889999999999999999999999
Q ss_pred HHHCC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-----------CC--C-HHHHHHHHHHHHHcCCH
Q 041822 343 MEEKR-----IGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF-----------VP--K-TRTVVMLMKFFCVNFRV 403 (500)
Q Consensus 343 ~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~p--~-~~~~~~ll~~~~~~~~~ 403 (500)
+.... ..++......|.-+|...+++++|..+++++.+... .| | ...+..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 87643 122344457889999999999999999999986311 12 2 23344566677889999
Q ss_pred hhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCchhHHHHHHHH
Q 041822 404 DLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS-EASYRMLQRYLVQANANEKLEDLDRM 482 (500)
Q Consensus 404 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~ 482 (500)
.+|++.++++.... +-|......+...+...|++.+|++.++..... .|+ ..+......++...+++..+..+.+.
T Consensus 433 ~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 433 PTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999998764 458888999999999999999999999777643 555 44456778888889999999888877
Q ss_pred HHHhh
Q 041822 483 IKNLQ 487 (500)
Q Consensus 483 ~~~~~ 487 (500)
+....
T Consensus 510 l~~~~ 514 (822)
T PRK14574 510 VISRS 514 (822)
T ss_pred HHhhC
Confidence 65554
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=3.2e-16 Score=157.81 Aligned_cols=376 Identities=11% Similarity=-0.026 Sum_probs=270.4
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
....+.-+..++...|++++|++.++.+++.. +.+...+..+..++...|++++|+.-|..+....+.. . .....+
T Consensus 159 ~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~-~-~~~~~~ 234 (615)
T TIGR00990 159 DPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR-N-EQSAQA 234 (615)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-c-HHHHHH
Confidence 34567777888999999999999999999863 5567789999999999999999999887766543221 1 111122
Q ss_pred HHHHhccccHHHHHHHHHHHHH-------------H--------Hhc---cccCCChhhHHHHHHHH---HcCCCHHHHH
Q 041822 146 LSRISKFQSYEETLEAFDRMER-------------E--------IFV---GIRKFGSEEFNVLLQAF---CTQKEMKEAR 198 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~-------------~--------~~~---~~~~~~~~~~~~ll~~~---~~~~~~~~A~ 198 (500)
+..+........+...++.-.. . +.. ...+.....+..+...+ ...+++++|.
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence 2111111111111111111000 0 000 00000001111111111 2246799999
Q ss_pred HHHHHhhh-C--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 199 SVFVKLLS-R--FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS-VVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 199 ~~~~~m~~-~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
+.|+...+ + .+.+...|+.+...+...|++++|...++...+. .|+ ...|..+...+...|++++|+..|++..
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 392 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKAL 392 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999986 2 2345677888899999999999999999999876 344 6688888999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 041822 275 RVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVT 354 (500)
Q Consensus 275 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 354 (500)
+.. +.+..+|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++..+.... +...
T Consensus 393 ~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~ 469 (615)
T TIGR00990 393 KLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDV 469 (615)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHH
Confidence 764 3457788899999999999999999999999875 336777888999999999999999999998876433 6778
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHH
Q 041822 355 YHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTR------TVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLL 428 (500)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 428 (500)
++.+...+...|++++|.+.|++..+..-..+.. .++.....+...|++++|.+++++.++.. +.+...+..+
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~l 548 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATM 548 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 8889999999999999999999988643111111 11222223344699999999999998865 2344578889
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc
Q 041822 429 VTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
...+.+.|++++|.+.|++..+.
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999998765
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.9e-15 Score=133.24 Aligned_cols=389 Identities=15% Similarity=0.226 Sum_probs=246.9
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCC--ChH-HHHHHHHHhHhhCCCCccHHHHHHHHH
Q 041822 71 NVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMR--YFD-QAWELMSHVQRTHPSLLTLKSMSIMLS 147 (500)
Q Consensus 71 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (500)
+-|+.. ..++....+.-+|+.|... |.+.++..-..++..-+-.+ ... .-++.|-.|...+ ..+..+|
T Consensus 120 ~nL~km-IS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW----- 190 (625)
T KOG4422|consen 120 NNLLKM-ISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG--EDSTSSW----- 190 (625)
T ss_pred hHHHHH-HhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc--ccccccc-----
Confidence 344443 5678889999999999987 67788877666665543322 222 2233333333322 1122222
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcC
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~ 226 (500)
+.|.+.+ -+|+. .|.+..+|..+|.++|+--..+.|.+++++... ..+.+..+||.+|.+-.-..
T Consensus 191 ---K~G~vAd--L~~E~---------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~ 256 (625)
T KOG4422|consen 191 ---KSGAVAD--LLFET---------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV 256 (625)
T ss_pred ---ccccHHH--HHHhh---------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc
Confidence 3344433 22322 355677888888888888888888888888775 56778888888887654332
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-H
Q 041822 227 DVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDA----MRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQ-A 301 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a----~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a 301 (500)
..+++.+|....++||..|+|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ +
T Consensus 257 ----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 257 ----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred ----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 267778888888888888888888888888877654 5677788888888888888888888888777643 3
Q ss_pred HHHHHhchh----CCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHHHcC
Q 041822 302 RQLFDEMPK----RNLKP----DIGAYNAMISSLIRCRDLNAAMELMDEMEEK----RIGHD---NVTYHTMFFGLMKSS 366 (500)
Q Consensus 302 ~~~~~~~~~----~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~g 366 (500)
..++.++.. .-++| |...|...+..|.+..+.+-|.++-.-.... -+.|+ ..-|..+....++..
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 344444332 22222 4455667777777778887777776544332 11222 233556667777777
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCC-CH-------
Q 041822 367 GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRG-RW------- 438 (500)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~------- 438 (500)
..+...+.|+.|+-.-+.|+..+...++++....+.++-..++|..++..|...+...-..++..+++.. ..
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Q 492 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQ 492 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 8888888888888777778888888888888888888888888888887775554444444444444433 10
Q ss_pred -HH-----HHHHH-------HHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhc
Q 041822 439 -EE-----AFECS-------KQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 439 -~~-----A~~~~-------~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (500)
.. |..++ .+|. .........+...-.+.+.|..++|.+++..+.+.+.
T Consensus 493 l~~~~ak~aad~~e~~e~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 493 LQVAFAKCAADIKEAYESQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 00 11111 1222 2233344555666666777777777777777754443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=2.8e-14 Score=143.86 Aligned_cols=384 Identities=11% Similarity=0.051 Sum_probs=278.4
Q ss_pred CCCChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHH
Q 041822 62 TPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKS 141 (500)
Q Consensus 62 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 141 (500)
.|..+..+. -++.++...|+.++|+..++++... .+.+......+...+...|++++|+++++++.+..|+. ...
T Consensus 64 ~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n--~~~ 138 (822)
T PRK14574 64 GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTN--PDL 138 (822)
T ss_pred CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHH
Confidence 333333344 5666677779999999999888732 23444455555678888899999999999999887775 345
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLG 221 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~ 221 (500)
+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..|.+...+..+..+
T Consensus 139 l~gLa~~y~~~~q~~eAl~~l~~l~~~------dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~ 212 (822)
T PRK14574 139 ISGMIMTQADAGRGGVVLKQATELAER------DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEI 212 (822)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhccc------CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 566778888889999999998888765 23344444444444445666668999999887666677777777766
Q ss_pred HHhcCCHHHHHHH------------------------------------------------HHHHHHC-CCCCCH-HHH-
Q 041822 222 FKESGDVTAMEMF------------------------------------------------YHEMVLR-GFRPSV-VTY- 250 (500)
Q Consensus 222 ~~~~~~~~~a~~~------------------------------------------------~~~~~~~-g~~~~~-~~~- 250 (500)
..+.|-...|.++ ++.+... +-.|.. ..|
T Consensus 213 l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~ 292 (822)
T PRK14574 213 LQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQ 292 (822)
T ss_pred HHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHH
Confidence 6666544333332 2222221 111221 111
Q ss_pred ---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCC-----CCCCHhhHHH
Q 041822 251 ---NIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRN-----LKPDIGAYNA 322 (500)
Q Consensus 251 ---~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 322 (500)
.-.+-++...|++.++++.|+.+...+.+....+-..+.++|...+++++|..+++++.... ..++......
T Consensus 293 ~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (822)
T PRK14574 293 RARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADD 372 (822)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHH
Confidence 22345677889999999999999998877677788899999999999999999999986643 1234445688
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 041822 323 MISSLIRCRDLNAAMELMDEMEEKRI-------------GHDNV-TYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTR 388 (500)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~~~~~~~-------------~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 388 (500)
|.-+|...+++++|..+++.+.+... .||-. .+..++..+...|+..+|++.++++.... +-|..
T Consensus 373 L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~ 451 (822)
T PRK14574 373 LYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQN 451 (822)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 99999999999999999999987422 12222 23445677889999999999999998653 45688
Q ss_pred HHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 041822 389 TVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASY 460 (500)
Q Consensus 389 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 460 (500)
....+...+...|.+.+|++.++...... +-+..+....+.++...|++++|..+.+...+. .|+....
T Consensus 452 l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~ 520 (822)
T PRK14574 452 LRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPS 520 (822)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhH
Confidence 88888899999999999999997777653 335667778888889999999999999998854 4554433
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=1.4e-13 Score=141.83 Aligned_cols=457 Identities=12% Similarity=0.047 Sum_probs=261.4
Q ss_pred hhhhHhhhcCCCCChhhhhhhcc-CCCCchhHHHHHHHHHhcCCCCCCCCchhhhhhCCC------------CCCCChHH
Q 041822 2 LLAKRLKRSDKFPGISDRLALLF-STTTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQ------------TTPLSSTL 68 (500)
Q Consensus 2 ~~~~~l~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 68 (500)
++.++|...|.++.+...+...+ ...........+.+.+...| ...........+.. ...+....
T Consensus 66 ~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--~n~~~~~~La~i~~~~kA~~~ye~l~~~~P~n~~ 143 (987)
T PRK09782 66 EFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP--GDARLERSLAAIPVEVKSVTTVEELLAQQKACDA 143 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHHHHHHHhccChhHHHHHHHHHHhCCCChh
Confidence 46677888887777776666533 33333334444444444433 11111111111110 00112233
Q ss_pred HHHHHHHH--------HhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHH-HHHHHcCCChHHHHHHHHHhHhhCCCCccH
Q 041822 69 VENVLGRL--------FAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKT-LHILARMRYFDQAWELMSHVQRTHPSLLTL 139 (500)
Q Consensus 69 ~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 139 (500)
+...+... |.+.+...+++ + .... ...|.+.+.... ...|...|++++|++++.++.+.+|. +.
T Consensus 144 ~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~-~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl--~~ 216 (987)
T PRK09782 144 VPTLRCRSEVGQNALRLAQLPVARAQL---N-DATF-AASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL--SA 216 (987)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHH---H-Hhhh-CCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC--CH
Confidence 33334443 44444444444 4 2222 123345544444 88999999999999999999998655 34
Q ss_pred HHHHHHHHHHhc-cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh--CCCCCHHhHH
Q 041822 140 KSMSIMLSRISK-FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS--RFAPNNKTMN 216 (500)
Q Consensus 140 ~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~ 216 (500)
.....+...|.. .++ +.+..+++.. .+.+...+..+...|.+.|+.++|.+++.++.. ...|...+|-
T Consensus 217 ~~~~~L~~ay~q~l~~-~~a~al~~~~--------lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 217 AERRQWFDVLLAGQLD-DRLLALQSQG--------IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred HHHHHHHHHHHHhhCH-HHHHHHhchh--------cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 455666667777 466 7777775431 345888999999999999999999999999874 1223222221
Q ss_pred HH------------------------------HHHHHhc-----------------------------------------
Q 041822 217 IL------------------------------LLGFKES----------------------------------------- 225 (500)
Q Consensus 217 ~l------------------------------~~~~~~~----------------------------------------- 225 (500)
.+ +..+.+.
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence 11 1222222
Q ss_pred ----------------------CCHHHHHHHHHHHHHC-C-CCC------------------------------------
Q 041822 226 ----------------------GDVTAMEMFYHEMVLR-G-FRP------------------------------------ 245 (500)
Q Consensus 226 ----------------------~~~~~a~~~~~~~~~~-g-~~~------------------------------------ 245 (500)
|+.++|.++++..... + -.+
T Consensus 368 ~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 368 LYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 2223333333332220 0 001
Q ss_pred ----------------------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 041822 246 ----------------------------SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN 297 (500)
Q Consensus 246 ----------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 297 (500)
+...|..+..++.. +++++|+..+.+..... |+......+...+...|+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr 524 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVED 524 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCC
Confidence 11122222222222 34445555444444332 443332233334456777
Q ss_pred HHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 041822 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDR 377 (500)
Q Consensus 298 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (500)
+++|...|+++... .|+...+..+...+.+.|+.++|...++...+.... +...+..+.......|++++|...+++
T Consensus 525 ~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 525 YATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred HHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77777777766443 333444555566677777777777777777665322 222222233334455788888888877
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH
Q 041822 378 MIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSE 457 (500)
Q Consensus 378 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 457 (500)
..+. .|+...+..+..++.+.|+.++|...++..++.. +.+...++.+..++...|++++|+..+++..+... -+.
T Consensus 602 AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~ 677 (987)
T PRK09782 602 SLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDP 677 (987)
T ss_pred HHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCH
Confidence 7754 4566777777777888888888888888887754 23456677777788888888888888888775422 234
Q ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 458 ASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
..+..+..++...|+.++|...++..-..
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 56677788888888888888777766544
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2.9e-13 Score=119.61 Aligned_cols=338 Identities=15% Similarity=0.172 Sum_probs=246.2
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHH
Q 041822 138 TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMN 216 (500)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~ 216 (500)
+..++..++.+.++.-+.++|.+++++-.... .+.+..+||.+|.+-.-... .+++.+|.+ +..||..|+|
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k----~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAK----GKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh----heeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 45678889999999999999999999887665 57789999999887543322 778889986 8999999999
Q ss_pred HHHHHHHhcCCHH----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHH----cCC----CCCHH
Q 041822 217 ILLLGFKESGDVT----AMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD-AMRLFEEMER----VAC----LPSLQ 283 (500)
Q Consensus 217 ~l~~~~~~~~~~~----~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~----~~~~~ 283 (500)
+++.+..+.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.+ +.|..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 9999999999875 567888899999999999999999999998888755 4555555543 222 23456
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhchhCC----CCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041822 284 TITTLIHGAGLVRNIHQARQLFDEMPKRN----LKPD---IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYH 356 (500)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 356 (500)
.|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|....++.-...|+.|.-.-.-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 67888888999999999988876554321 2222 2346677778888889999999999998887778888888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CH--------h-----hHHHH-------HHHHHH
Q 041822 357 TMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNF-RV--------D-----LGLNL-------WGYLID 415 (500)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~--------~-----~a~~~-------~~~~~~ 415 (500)
.++++..-.|.++-.-++|.+++..|..-+...-..++..+++.. .. . -|..+ -.++.+
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 899999899999998899988887775544444444444444433 11 0 01111 122233
Q ss_pred CCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCCHHHHH---HHHHHHHHcCchhHHHHHHHHHHH
Q 041822 416 RGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRR-QVSEASYR---MLQRYLVQANANEKLEDLDRMIKN 485 (500)
Q Consensus 416 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~ 485 (500)
.. ......+.....+.+.|+.++|.+++.-..+.+- .|.....+ -++......+....|....+.+..
T Consensus 518 ~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 518 QD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred cc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33 3445677777888999999999999999865543 23333344 455566677777778877777743
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.7e-13 Score=131.58 Aligned_cols=412 Identities=10% Similarity=0.072 Sum_probs=270.2
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCC-CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHF-TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
.++.+.+.|.+.+...+++..+..+.+.+....-. +.-...|-.+.+++-..|++++|...|.+..+..++... -.+.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~-l~~~ 346 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV-LPLV 346 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc-cccc
Confidence 45667778888888888998888888888774211 122345778888888889999998888888776555422 2345
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCC----CHHHHHHHHHHhhhCCCCCHHhHHHHH
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQK----EMKEARSVFVKLLSRFAPNNKTMNILL 219 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~A~~~~~~m~~~~~~~~~~~~~l~ 219 (500)
.+...|.+.|+.+.+...|+.+.+. .|.+..+...|...|...+ ..+.|..++....+..+.|...|-.+.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~-----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~la 421 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQ-----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELA 421 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHh-----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 5777888888888888888888877 4667777777777777764 456677777777766677777887777
Q ss_pred HHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCH------HHHH
Q 041822 220 LGFKESGDVTAMEMFYHEM----VLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV---ACLPSL------QTIT 286 (500)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~------~~~~ 286 (500)
..+....-+.. +.+|... ...|-.+.....|.+...+...|++++|...|.+.... ...++. .+--
T Consensus 422 ql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 422 QLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 77665544433 4444433 34454566777788888888888888888887776543 111222 1111
Q ss_pred HHHHHHHccCCHHHHHHHHHhc----------------------------------hhCCCCCCHhhHHHHHHHHHhcCC
Q 041822 287 TLIHGAGLVRNIHQARQLFDEM----------------------------------PKRNLKPDIGAYNAMISSLIRCRD 332 (500)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~~----------------------------------~~~~~~~~~~~~~~li~~~~~~g~ 332 (500)
.+...+-..++.+.|.+.|..+ ...+ ..++..+..+...+.+...
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 1222233333444444444444 3332 2234444444445555555
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH------------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 041822 333 LNAAMELMDEMEEK-RIGHDNVTYHTMFFGLMK------------SSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCV 399 (500)
Q Consensus 333 ~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 399 (500)
+..|.+-|+.+.+. ...+|+.+.-+|...|.+ .+..++|+++|.+..... +-|...-+.+.-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 55555555444433 112344444444444432 234677888888877653 3345556666777788
Q ss_pred cCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCchhHHHH
Q 041822 400 NFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR-RRQVSEASYRMLQRYLVQANANEKLED 478 (500)
Q Consensus 400 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~ 478 (500)
.|++..|..+|....+... -...+|-.+.++|..+|++..|+++|+...+. ...-+......|.+++...|.+.++.+
T Consensus 659 kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 8999999999999888642 24457778889999999999999999887764 334566777888999999998888877
Q ss_pred HHHHHHHh
Q 041822 479 LDRMIKNL 486 (500)
Q Consensus 479 ~~~~~~~~ 486 (500)
........
T Consensus 738 ~ll~a~~~ 745 (1018)
T KOG2002|consen 738 ALLKARHL 745 (1018)
T ss_pred HHHHHHHh
Confidence 76555444
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=1.4e-12 Score=134.59 Aligned_cols=381 Identities=8% Similarity=-0.020 Sum_probs=227.2
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccc
Q 041822 74 GRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQ 153 (500)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 153 (500)
+..+.+++++..+.++.. +.|.......-.......+...++....+.+.+..|. +...+..+.-...+.|
T Consensus 320 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~--~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 320 LPVLLKEGQYDAAQKLLA-------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA--NLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHhccHHHHHHHHhc-------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcc
Confidence 555666676665554411 1222222222222222335566666666666665333 3334444444456677
Q ss_pred cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCC---HHHHHHH----------------------HHHhh---
Q 041822 154 SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKE---MKEARSV----------------------FVKLL--- 205 (500)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~A~~~----------------------~~~m~--- 205 (500)
+.++|.++|+........ ...+....+-++..|.+.+. ..++..+ ++...
T Consensus 391 ~~~~a~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 391 QSREAADLLLQRYPFQGD--ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL 468 (987)
T ss_pred cHHHHHHHHHHhcCCCcc--cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence 777777777765442100 11233334456666665544 2222222 12222
Q ss_pred hCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 041822 206 SRFAP--NNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQ 283 (500)
Q Consensus 206 ~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 283 (500)
...++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+..
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~ 543 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNE 543 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcH
Confidence 12344 66677777777766 6777788777766655 455444334444556788888888888877554 34444
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 284 TITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLM 363 (500)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 363 (500)
.+..+..++.+.|+.++|...+++..+.+ +.+...+..+.....+.|++++|...+++..+.. |+...|..+..++.
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~ 620 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYR 620 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 55566667778888888888888877764 2233333333344445588888888888877654 45667777778888
Q ss_pred HcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 041822 364 KSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAF 442 (500)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 442 (500)
+.|++++|+..+++..+. .|+ ...+..+..++...|+.++|...++..++.. +-+...+..+..++...|++++|.
T Consensus 621 ~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 621 QRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 888888888888887765 344 5666667777788888888888888887753 235567777888888888888888
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHHcCchhHHHH
Q 041822 443 ECSKQMLVRRRQVSE-ASYRMLQRYLVQANANEKLED 478 (500)
Q Consensus 443 ~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 478 (500)
..+++..+. .|+. .+.-...+...+..+++.+.+
T Consensus 698 ~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 698 HYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 888888754 3433 222233333444444444444
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.3e-12 Score=126.98 Aligned_cols=408 Identities=12% Similarity=0.080 Sum_probs=282.4
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhC-CCCccHHHHHHHHHHHhccccHHH
Q 041822 79 AHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTH-PSLLTLKSMSIMLSRISKFQSYEE 157 (500)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 157 (500)
....+..++.++..+...+ +.++...+.+...+--.|+++.++.+.+.+.... ....-...+-.+.++|-..|++++
T Consensus 248 d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 248 DSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred chHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHH
Confidence 3456678999998888865 5788889999999999999999999999998742 122334567789999999999999
Q ss_pred HHHHHHHHHHHHhccccCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC----CHHHHH
Q 041822 158 TLEAFDRMEREIFVGIRKFG-SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG----DVTAME 232 (500)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~----~~~~a~ 232 (500)
|...|.+..+.. +.+ +..+.-+...+...|+.+.+...|+...+..+.+..+...|...|...+ ..+.|.
T Consensus 326 A~~yY~~s~k~~-----~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~ 400 (1018)
T KOG2002|consen 326 AFKYYMESLKAD-----NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKAS 400 (1018)
T ss_pred HHHHHHHHHccC-----CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHH
Confidence 999999887663 233 5566788999999999999999999999988889999999999998875 446777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 041822 233 MFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM----ERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEM 308 (500)
Q Consensus 233 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 308 (500)
.++....+.- +.|...|-.+...+-.. +...++..|... ...+-.+.....|.+...+...|+++.|...|...
T Consensus 401 ~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 401 NVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 7776666553 44777887777776654 444447666554 34555577888999999999999999999999887
Q ss_pred hhC---CCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------------------------
Q 041822 309 PKR---NLKPDI------GAYNAMISSLIRCRDLNAAMELMDEMEEKRIG------------------------------ 349 (500)
Q Consensus 309 ~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------------------------------ 349 (500)
... ...+|. .+--.+...+-..++.+.|.++|..+.+..+.
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 665 112222 22223344444455666666666666554211
Q ss_pred ---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH------------cCCHhhHHHHHHHH
Q 041822 350 ---HDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG-KFVPKTRTVVMLMKFFCV------------NFRVDLGLNLWGYL 413 (500)
Q Consensus 350 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~ 413 (500)
.++..++.+...+.+...+..|.+-|....+. ...+|..+...|...|.. .+..+.|+++|.+.
T Consensus 559 ~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 559 IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 12222222233333333444444433333221 112444444455554432 23467788888888
Q ss_pred HHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhc-cCCC
Q 041822 414 IDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQA-VLPP 492 (500)
Q Consensus 414 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p 492 (500)
++.. +-|...-|.+.-+++..|++.+|..+|.+.++... -...+|--+..+|...|++..|.++++..-+.+. -..+
T Consensus 639 L~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~ 716 (1018)
T KOG2002|consen 639 LRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS 716 (1018)
T ss_pred HhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 8864 34666777888889999999999999999988654 1334677888999999999999888776554443 2333
Q ss_pred Ccccc
Q 041822 493 PTRQQ 497 (500)
Q Consensus 493 ~~~hy 497 (500)
.+-||
T Consensus 717 ~vl~~ 721 (1018)
T KOG2002|consen 717 EVLHY 721 (1018)
T ss_pred HHHHH
Confidence 34444
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=3.3e-12 Score=123.27 Aligned_cols=351 Identities=12% Similarity=0.068 Sum_probs=190.5
Q ss_pred HhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHH
Q 041822 77 FAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYE 156 (500)
Q Consensus 77 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (500)
+..+|+.++|.+++..++++. +.....|..+..+|-..|+.+++...+-.+....|. +...|..+.....+.|.++
T Consensus 149 lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~--d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK--DYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcccHH
Confidence 344577777777777777754 566677777777777777777777766655555443 4467777777777777777
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCH-----HhHHHHHHHHHhcCCHHHH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNN-----KTMNILLLGFKESGDVTAM 231 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-----~~~~~l~~~~~~~~~~~~a 231 (500)
+|.-.|.+..+. .|++...+---...|-+.|+...|.+-|.++..-.+|.. ..-..+++.+...++-+.|
T Consensus 225 qA~~cy~rAI~~-----~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 225 QARYCYSRAIQA-----NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred HHHHHHHHHHhc-----CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 777777777766 355655555566677777777777777777776433322 1223334555566666777
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhch-
Q 041822 232 EMFYHEMVLR-GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMP- 309 (500)
Q Consensus 232 ~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~- 309 (500)
.+.++..... +-..+...++.++..+.+...++.|......+......+|..-|.+-= .++ .-+....
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~-----~~~~~~~~ 369 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRR-----EEPNALCE 369 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hcc-----cccccccc
Confidence 7776666553 223355566777777777777777777776666533223322221000 000 0000000
Q ss_pred -hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 041822 310 -KRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKR--IGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK 386 (500)
Q Consensus 310 -~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 386 (500)
..+..++..++ -++-++.+....+....+..-..+.. +.-+...|.-+..+|...|++.+|+++|..+......-+
T Consensus 370 ~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 370 VGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred CCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 01112222221 11112222222333333333333332 222334455555666666666666666666554433333
Q ss_pred HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041822 387 TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448 (500)
Q Consensus 387 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (500)
...|.-+.+++...|..++|.+.++..+... +-+...--.|...+.+.|+.++|.++++.+
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 4455555555566666666666666655532 112233334445555666666666666554
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=4.3e-12 Score=122.48 Aligned_cols=413 Identities=12% Similarity=0.056 Sum_probs=293.0
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.....|..|..++-..|+..+++.++-.+.... |-|...|..+.......|.+.+|.-.|.+..+..|.. ....-.
T Consensus 171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n--~~~~~e 246 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN--WELIYE 246 (895)
T ss_pred cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc--hHHHHH
Confidence 455667789999999999999999887776643 6677899999999999999999999999999987654 455556
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhH----HHHHHHHHcCCCHHHHHHHHHHhhh--CCCCCHHhHHHH
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEF----NVLLQAFCTQKEMKEARSVFVKLLS--RFAPNNKTMNIL 218 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~~l 218 (500)
-...|-+.|+...|.+.|.++.... .+.|..-+ -.++..+...++-+.|.+.++...+ +-..+...++.+
T Consensus 247 rs~L~~~~G~~~~Am~~f~~l~~~~----p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ 322 (895)
T KOG2076|consen 247 RSSLYQKTGDLKRAMETFLQLLQLD----PPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNIL 322 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhC----CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 6677999999999999999998773 22222223 3345667777888999999998886 556677889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--------------------------HHHHHHHHhcCChhHHHHHHHH
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY--------------------------NIRIDGYCKKGCFGDAMRLFEE 272 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--------------------------~~li~~~~~~g~~~~a~~~~~~ 272 (500)
+..+.+...++.+......+.....++|..-| --++-++...+..+....+...
T Consensus 323 ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~ 402 (895)
T KOG2076|consen 323 AELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHF 402 (895)
T ss_pred HHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHH
Confidence 99999999999999998888773222222222 1122333444444555555555
Q ss_pred HHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 041822 273 MERVAC--LPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGH 350 (500)
Q Consensus 273 m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 350 (500)
..+..+ .-+...|.-+..+|...|++..|+.+|..+......-+..+|-.+..+|...|..++|.+.|+.+....+.
T Consensus 403 l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~- 481 (895)
T KOG2076|consen 403 LVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD- 481 (895)
T ss_pred HHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-
Confidence 555553 33456788889999999999999999999988765556789999999999999999999999999886433
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCC---
Q 041822 351 DNVTYHTMFFGLMKSSGLEGVCKLYDRMI--------EGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFC--- 419 (500)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~--------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--- 419 (500)
+...--.|...+.+.|+.++|.+.++.+. ..+..|+..........+...|+.++-..+...|+.....
T Consensus 482 ~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~ 561 (895)
T KOG2076|consen 482 NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRY 561 (895)
T ss_pred chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344456677889999999999998864 2234555555566666778889988877777777763211
Q ss_pred --CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH-------------------------HHHHHHHHHHHHcCc
Q 041822 420 --PHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSE-------------------------ASYRMLQRYLVQANA 472 (500)
Q Consensus 420 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------------------------~~~~~l~~~~~~~~~ 472 (500)
|+..-=.....+-...+...+-......|...+..-.. ..+.-++.++.+.+.
T Consensus 562 ~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r 641 (895)
T KOG2076|consen 562 IFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQR 641 (895)
T ss_pred hcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHh
Confidence 11111112222223345566666666777776432110 123455677778888
Q ss_pred hhHHHHHHHHHHHh
Q 041822 473 NEKLEDLDRMIKNL 486 (500)
Q Consensus 473 ~~~~~~~~~~~~~~ 486 (500)
.++|..+...+...
T Consensus 642 ~qeAl~vv~~a~~~ 655 (895)
T KOG2076|consen 642 VQEALSVVFTALEA 655 (895)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888776655443
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=1.4e-12 Score=123.72 Aligned_cols=281 Identities=12% Similarity=0.089 Sum_probs=168.7
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhh-HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHH--HHHHHHHhcCCH
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEE-FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMN--ILLLGFKESGDV 228 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~--~l~~~~~~~~~~ 228 (500)
.|+++.|.+.+....+. .+++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|++
T Consensus 97 eGd~~~A~k~l~~~~~~------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL-ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred CCCHHHHHHHHHHHHhc------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHCCCH
Confidence 57777777666554332 111222 222334446677777777777777652 33332222 225566777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCCHHHH
Q 041822 229 TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL-------QTITTLIHGAGLVRNIHQA 301 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a 301 (500)
+.|...++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+..
T Consensus 170 ~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 170 HAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 77777777777664 235666667777777777777777777777776543222 1223333333344455566
Q ss_pred HHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 302 RQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
.++++.+.+. .+.++.....+...+...|+.++|.+++++..+.. ++... .++.+....++.+++.+..+...+.
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhh
Confidence 6666665443 23456666777777777777777777777666642 23321 1233333456777777777766654
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041822 382 KFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 382 ~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
.|+ ...+..+.+.|.+.+++++|.+.|+.+.+. .|+...|..+...+.+.|+.++|.+++++..
T Consensus 324 --~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 324 --HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333 445566667777777777777777777764 3666666677777777777777777776654
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=8.2e-13 Score=125.92 Aligned_cols=287 Identities=10% Similarity=-0.013 Sum_probs=160.5
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHH
Q 041822 190 TQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSV--VTYNIRIDGYCKKGCFGDAM 267 (500)
Q Consensus 190 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~a~ 267 (500)
..|+++.|.+.+.+..+..+-....+-....++.+.|+.+.+..++.+..+.. |+. .........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 45666666666665544222222333334455556666666666666665542 332 22333455566666677777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHH-HHHHHH---HhcCCHHHHHHHHHHH
Q 041822 268 RLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYN-AMISSL---IRCRDLNAAMELMDEM 343 (500)
Q Consensus 268 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~g~~~~a~~~~~~~ 343 (500)
+.++.+.+.. +-+......+...+...|+++.|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666654 234455666666666667777676666666666533 222221 111111 2222222223333333
Q ss_pred HHCCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHH--HHHcCCHhhHHHHHHHHHHCC
Q 041822 344 EEKRI---GHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTV-VMLMKF--FCVNFRVDLGLNLWGYLIDRG 417 (500)
Q Consensus 344 ~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~ll~~--~~~~~~~~~a~~~~~~~~~~~ 417 (500)
.+... +.+...+..+...+...|+.++|.+++++..+. .||.... ..++.. ....++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 33321 125666666777777777777777777777664 3333210 012222 233466666777777666542
Q ss_pred CCCCH--hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHH
Q 041822 418 FCPHG--HALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMI 483 (500)
Q Consensus 418 ~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 483 (500)
+-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++++.-
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2233 4556777777778888888887775444345677777777777788888888777777654
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=1.7e-12 Score=123.76 Aligned_cols=290 Identities=10% Similarity=0.042 Sum_probs=153.5
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCH-HhHHHHHHHHHhcCCHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNN-KTMNILLLGFKESGDVT 229 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~l~~~~~~~~~~~ 229 (500)
..|+++.|.+.+.+..+. .+.....+-....++.+.|+.+.|.+.+.+..+..+.+. ...-.....+...|+++
T Consensus 96 ~~g~~~~A~~~l~~~~~~-----~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH-----AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred hCCCHHHHHHHHHHHhhc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 345555555555544332 111222233334445555666666666655544221111 12222355555566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HccCC----HHHHH
Q 041822 230 AMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGA---GLVRN----IHQAR 302 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~~~----~~~a~ 302 (500)
.|...++.+.+.+ +-+......+...+...|++++|.+.+..+.+.++.+.......-..++ ...+. .+...
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 6666666665553 2244455555566666666666666666666554322221111111111 11122 22223
Q ss_pred HHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 303 QLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTY-HTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
+.+....+. .+.+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+.+.++...+.
T Consensus 250 ~~~~~~p~~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 250 NWWKNQPRH-RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHCCHH-HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 333332221 1225667777777777777777777777777765332211111 11112223346667777777776654
Q ss_pred CCCCC-H--HHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041822 382 KFVPK-T--RTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 382 ~~~p~-~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
.|+ + ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 329 --~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 --VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred --CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 343 3 44556777777888888888888854443345777777778888888888888888887754
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=2.1e-15 Score=136.62 Aligned_cols=260 Identities=13% Similarity=0.150 Sum_probs=80.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHH
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQA 187 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 187 (500)
.+...+.+.|++++|+++++.......+..+...|..+.......++++.|...++++...+ +.+...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-----~~~~~~~~~l~~l 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-----KANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccc
Confidence 44555556666666666664333221011122334444444555566666666666665542 2344455555555
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHH
Q 041822 188 FCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRG-FRPSVVTYNIRIDGYCKKGCFGDA 266 (500)
Q Consensus 188 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~a 266 (500)
...+++++|.+++....+. .++...+..++..+.+.++++.+..+++.+.+.. .+.+...|..+...+.+.|+.++|
T Consensus 88 -~~~~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 -LQDGDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred -ccccccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5666666666666555432 2345555666666666666666666666655432 234555666666666666777777
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 267 MRLFEEMERVACLP-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEE 345 (500)
Q Consensus 267 ~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 345 (500)
++.+++..+.. | |......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|..+|++..+
T Consensus 166 ~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 166 LRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 77666666654 3 35556666666666666666666666555543 33445556666666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 041822 346 KRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRM 378 (500)
Q Consensus 346 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 378 (500)
.... |......+..++.+.|+.++|.++.++.
T Consensus 243 ~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 243 LNPD-DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HSTT--HHHHHHHHHHHT---------------
T ss_pred cccc-cccccccccccccccccccccccccccc
Confidence 4332 5555566666666666666666666554
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=3.2e-12 Score=121.16 Aligned_cols=283 Identities=11% Similarity=0.018 Sum_probs=219.0
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChhHHH
Q 041822 191 QKEMKEARSVFVKLLSRFAPNNKT-MNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYN--IRIDGYCKKGCFGDAM 267 (500)
Q Consensus 191 ~~~~~~A~~~~~~m~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~a~ 267 (500)
.|+++.|++.+....+. .++... |-....+..+.|+++.+...+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~-~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH-AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 79999999888876543 222333 333345558899999999999999876 55554333 3367888999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHH
Q 041822 268 RLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDI-------GAYNAMISSLIRCRDLNAAMELM 340 (500)
Q Consensus 268 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~ 340 (500)
+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999876 446778889999999999999999999999988754322 23344444444555666777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCC
Q 041822 341 DEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420 (500)
Q Consensus 341 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (500)
+.+.+. .+.++.....+..++...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+.. +-
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 766443 2337778888999999999999999999998874 5555322 3344455699999999999998864 34
Q ss_pred CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Q 041822 421 HGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKN 485 (500)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 485 (500)
|...+..+...+.+.|++++|.+.|+.+.+. .|+..++..+..++.+.|+.+++..+++.--.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6667889999999999999999999999964 69999999999999999999999998886533
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=1.7e-12 Score=115.60 Aligned_cols=405 Identities=12% Similarity=0.103 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHh-HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc---cHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDA-FEKTLHILARMRYFDQAWELMSHVQRTHPSLL---TLKSM 142 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~ 142 (500)
++++| |..-|.......+|+..++.+.+..-| |+... -..+..++.+.+.+.+|++.++.....-|... ....+
T Consensus 202 svl~n-laqqy~~ndm~~ealntyeiivknkmf-~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 202 SVLFN-LAQQYEANDMTAEALNTYEIIVKNKMF-PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred HHHHH-HHHHhhhhHHHHHHhhhhhhhhccccc-CCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 34443 334455667778888888888776433 44443 34566777888889999999887776544321 12334
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh--CC-----------C
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS--RF-----------A 209 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~~-----------~ 209 (500)
+.+.-.+.+.|++++|+..|+...+. .|+..+--.|+-++..-|+-++..+.|.+|.. +. .
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~------~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~dd 353 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE------APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDD 353 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh------CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCC
Confidence 44555688889999999999988776 34554444455555567888888888888874 21 1
Q ss_pred CCHHhHHHHH-----HHHHhcCCHHHHHHHHHH---HHHCCCCCCHHH-------------H--------HHHHHHHHhc
Q 041822 210 PNNKTMNILL-----LGFKESGDVTAMEMFYHE---MVLRGFRPSVVT-------------Y--------NIRIDGYCKK 260 (500)
Q Consensus 210 ~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~---~~~~g~~~~~~~-------------~--------~~li~~~~~~ 260 (500)
|+....+.-+ +-+.+.+.- .|++..-. ++.--+.|+-.. + -.-..-+.+.
T Consensus 354 p~~~ll~eai~nd~lk~~ek~~ka-~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 354 PDDNLLNEAIKNDHLKNMEKENKA-DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred cchHHHHHHHhhHHHHHHHHhhhh-hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 2222222222 111111111 12211111 111112222100 0 1112456778
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHH--H----------------------------------HHHHccCCHHHHHHH
Q 041822 261 GCFGDAMRLFEEMERVACLPSLQTITTL--I----------------------------------HGAGLVRNIHQARQL 304 (500)
Q Consensus 261 g~~~~a~~~~~~m~~~~~~~~~~~~~~l--l----------------------------------~~~~~~~~~~~a~~~ 304 (500)
|+++.|+++++-..+.+-+.-...-+.| + +.....|++++|.+.
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHH
Confidence 8888888877766554322111111111 0 011234677777777
Q ss_pred HHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 041822 305 FDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFV 384 (500)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 384 (500)
|++.....-......||. .-.+-..|++++|++.|-++...- ..+......+...|-...+...|++++.+.... ++
T Consensus 513 ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip 589 (840)
T KOG2003|consen 513 YKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IP 589 (840)
T ss_pred HHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CC
Confidence 777776543322333332 224556677777777776554321 114455555666666666777777776554432 33
Q ss_pred CCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 385 PKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQ 464 (500)
Q Consensus 385 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 464 (500)
.|+..+.-|...|-+.|+-.+|.+.+-.--.. ++.+..+...|..-|....-+++++.+|++.. -+.|+..-|..++
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmi 666 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMI 666 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHH
Confidence 34666666666666666666665554433322 34455555555555555555556666655543 3455555554443
Q ss_pred -HHHHHcCchhHHHHHHHHHHHh
Q 041822 465 -RYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 465 -~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
.++.+.|.++.+..+++.+..+
T Consensus 667 asc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh
Confidence 3334556666655555554443
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=3.7e-15 Score=134.99 Aligned_cols=257 Identities=12% Similarity=0.072 Sum_probs=63.4
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRF--APNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC 262 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 262 (500)
...+.+.|++++|.++++...... +.|...|..+...+...++++.|...++++.+.+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444455555555555554433222 223333333444444455555555555555544322 33344444444 45555
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 263 FGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRN-LKPDIGAYNAMISSLIRCRDLNAAMELMD 341 (500)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 341 (500)
+++|.++++...+.. ++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555554443332 334444445555555555555555555543321 12344445555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCC
Q 041822 342 EMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPH 421 (500)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 421 (500)
+..+..+. |....+.++..+...|+.+++.++++...+.. ..|+..+..+..++...|+.++|...+++..+.. +.|
T Consensus 171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 55544322 34444445555555555555555554444321 2223334444555555555555555555555432 224
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041822 422 GHALDLLVTGLCSRGRWEEAFECSKQM 448 (500)
Q Consensus 422 ~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (500)
..+...+..++...|+.++|.++.++.
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444445555555555555555554443
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=6.2e-12 Score=107.46 Aligned_cols=271 Identities=13% Similarity=0.099 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHhcCChhHHHH
Q 041822 192 KEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR-GFRPS--VVTYNIRIDGYCKKGCFGDAMR 268 (500)
Q Consensus 192 ~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~~~--~~~~~~li~~~~~~g~~~~a~~ 268 (500)
.+.++|.+.|-+|.+..+.+..+--+|.+.|.+.|..|.|.++.+.+.++ +.+.+ ......|..-|...|-++.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 34555555555555544444444455555555555555555555555443 11100 1122234444555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 269 LFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDI----GAYNAMISSLIRCRDLNAAMELMDEME 344 (500)
Q Consensus 269 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~ 344 (500)
+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+.-..+++.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 555555543 122334445555555555555555555555544332221 123444444444555566666655555
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhH
Q 041822 345 EKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHA 424 (500)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 424 (500)
+.+.+ .+..--.+.+.....|++++|.+.++...+.+..--+.+...|..+|...|+.+++...+..+.+.. ++...
T Consensus 208 qa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~ 284 (389)
T COG2956 208 QADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADA 284 (389)
T ss_pred hhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccH
Confidence 54322 2222223344555556666666666665554322224455555556666666666666655555532 22222
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041822 425 LDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLV 468 (500)
Q Consensus 425 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 468 (500)
-..+...-....-.+.|...+.+-.. -+|+...+..++.+-.
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhh
Confidence 22222222223333444444333332 2355555555555543
No 39
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=9.5e-12 Score=106.35 Aligned_cols=291 Identities=14% Similarity=0.122 Sum_probs=208.9
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC--CC--CCHHhHHHHHHHHHhcC
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR--FA--PNNKTMNILLLGFKESG 226 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~--~~~~~~~~l~~~~~~~~ 226 (500)
-.++.++|.+.|-+|.+. .+.+.++--+|.+.|-+.|..|.|+.+.+.+.+. .+ .-......|..-|...|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~-----d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE-----DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred hhcCcchHHHHHHHHHhc-----CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence 347788888888888775 4556666778888888888888888888888753 11 11234556667777888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHH
Q 041822 227 DVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS----LQTITTLIHGAGLVRNIHQAR 302 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~ 302 (500)
-+|.|+.+|..+.+.|. .-......|+..|-...+|++|+++-+++.+.+-.+. ...|.-+...+....+.+.|.
T Consensus 122 l~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 88899999888887642 2455667788888888999999988888887663333 223555666666778888999
Q ss_pred HHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 041822 303 QLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK 382 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 382 (500)
.++++..+.+.+ .+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...++.++.+..
T Consensus 201 ~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999888887532 4555566777888899999999999999888655555677788889999999999999999888764
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHh---cCCCHHHHHHHHHHHHHcC
Q 041822 383 FVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLC---SRGRWEEAFECSKQMLVRR 452 (500)
Q Consensus 383 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~ 452 (500)
..++ ....+-.......-.+.|...+.+-+.. .|+...+..+|..-. ..|+..+-...+++|....
T Consensus 280 ~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 280 TGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred CCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 3333 3334444444445556666666655554 488888888887653 3456777777888887543
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.5e-10 Score=102.47 Aligned_cols=162 Identities=17% Similarity=0.097 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHH
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLI 328 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 328 (500)
|+..+.+-|.-.++.++|...|++..+.+ +-....|+.+..-|....+...|++-++..++.+ +.|-..|-.|.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 44444444444555555555555555443 1223344445555555555555555555555443 224445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHH
Q 041822 329 RCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLN 408 (500)
Q Consensus 329 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 408 (500)
-.+...-|+-.|++.....+. |...|.+|...|.+.++.++|++.|.+....| ..+...+..+...+-+.++.++|..
T Consensus 410 im~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 555555555555554443322 44555555555555555555555555554433 2234444555555555555555555
Q ss_pred HHHHHH
Q 041822 409 LWGYLI 414 (500)
Q Consensus 409 ~~~~~~ 414 (500)
.++.-+
T Consensus 488 ~yek~v 493 (559)
T KOG1155|consen 488 YYEKYV 493 (559)
T ss_pred HHHHHH
Confidence 544443
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=1.8e-09 Score=101.05 Aligned_cols=394 Identities=9% Similarity=-0.011 Sum_probs=207.6
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHh---hCCCCccHHHHHHHHHHHhccccHHH
Q 041822 81 SNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQR---THPSLLTLKSMSIMLSRISKFQSYEE 157 (500)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~ 157 (500)
..|+.|..+++.+.+. +|-+...|......--..|+.+...+++.+-.. ..+...+...|..-...|-..|..-.
T Consensus 420 etYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 4566777777777663 566677776666666666777776666665543 23334455555555555555555555
Q ss_pred HHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 158 TLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHE 237 (500)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 237 (500)
+..+...+..-|.. ......+|+.-...|.+.+.++-|..+|...++-++-+...|......--..|..+....++++
T Consensus 498 cQAIi~avigigvE--eed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVE--EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred HHHHHHHHHhhccc--cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 55555555444321 1222334555555555555555555555555544444444444444444444444444444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCH
Q 041822 238 MVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDI 317 (500)
Q Consensus 238 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 317 (500)
....- +-....|......+-..|+...|..++.+..+.. +-+...|-.-+..-..+..++.|..+|.+.... .|+.
T Consensus 576 av~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTe 651 (913)
T KOG0495|consen 576 AVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTE 651 (913)
T ss_pred HHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcc
Confidence 44431 1123333333444444444444444444444332 113333444444444444444444444444332 2233
Q ss_pred hhH----------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 318 GAY----------------------------------NAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLM 363 (500)
Q Consensus 318 ~~~----------------------------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 363 (500)
.+| ..+.+.+-..++++.|.+.|..-.+. +...+..|-.+...=-
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEE 730 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHH
Confidence 333 33333344444444444443322221 1113334444444445
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHC----C----------------------
Q 041822 364 KSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR----G---------------------- 417 (500)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~---------------------- 417 (500)
+.|+.-+|..++++.+-.+ +-+...|...|+.-.+.|+.+.|..+..+.++. |
T Consensus 731 k~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred HhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHH
Confidence 5566666666666665442 234566667777777777777777666555542 1
Q ss_pred ---CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 418 ---FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS-EASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 418 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
+..|..+.-.+...|....++++|.+.|++....+ || -.+|..+...+...|..+.-.+++++....
T Consensus 810 Lkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 810 LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 11244455566667777778888888888887543 33 346677777778888777777777766554
No 42
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=8.1e-11 Score=103.85 Aligned_cols=286 Identities=12% Similarity=0.080 Sum_probs=203.8
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcCCHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVT 229 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~~~~ 229 (500)
..|++..|++...+-.+.+ +.....|..-..+.-+.|+.+.+-.++.+..+ -..++...+-+........|+.+
T Consensus 96 ~eG~~~qAEkl~~rnae~~-----e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-----EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-----cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 3588888888877765553 33344555566667778888888888888876 23556666777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCCHHHHH
Q 041822 230 AMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL-------QTITTLIHGAGLVRNIHQAR 302 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~ 302 (500)
.|..-++++.+.+. -+.........+|.+.|++.....++..|.+.|.-.++ .+|..+++-....+..+.-.
T Consensus 171 aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 171 AARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 88888888877753 35677778888888888888888888888888765543 35666666666666666666
Q ss_pred HHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 041822 303 QLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK 382 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 382 (500)
+.|+...+. .+.++..-.+++.-+.++|+.++|.++.++..+++..|.. ...-.+.+-++.+.-++..+......
T Consensus 250 ~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 250 TWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 677766554 3446667777788888888888888888888777665541 12234456677777777666655431
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 383 FVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 383 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
.-++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+.++|.+.|+..+|.++.++...
T Consensus 325 -~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 325 -PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 223466677777888888888888888877664 47888888888888888888888888877654
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=3e-12 Score=119.78 Aligned_cols=283 Identities=12% Similarity=0.043 Sum_probs=169.7
Q ss_pred cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC---CCCCHHhHHHHHHHHHhcCCHHH
Q 041822 154 SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR---FAPNNKTMNILLLGFKESGDVTA 230 (500)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~~~~~~~~l~~~~~~~~~~~~ 230 (500)
+..+|+..|..++.. ..-...+...+.++|...+++++|+++|+.+.+. ..-+.++|.+.+...-+.=.+.
T Consensus 334 ~~~~A~~~~~klp~h-----~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls- 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-----HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS- 407 (638)
T ss_pred HHHHHHHHHHhhHHh-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH-
Confidence 456667777765554 2333355566677777777777777777777642 2335666666665442211111
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhch
Q 041822 231 MEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLP-SLQTITTLIHGAGLVRNIHQARQLFDEMP 309 (500)
Q Consensus 231 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 309 (500)
.+-+++.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+.+ | ...+|+.+..-+.....+|.|...|+..+
T Consensus 408 --~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 408 --YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred --HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 1112222221 2356677777777777777777777777777654 3 56667766666666777777777777665
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 041822 310 KRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRT 389 (500)
Q Consensus 310 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 389 (500)
..... +-..|-.+...|.+.++++.|+-.|+...+.++. +.+....+...+.+.|+.++|+++|+++....- -|+..
T Consensus 483 ~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~ 559 (638)
T KOG1126|consen 483 GVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLC 559 (638)
T ss_pred cCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchh
Confidence 54211 2334444556677777777777777777766554 455555566666777777777777777665431 12222
Q ss_pred HHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 390 VVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 390 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
--.-...+...++.++|+..++++++.- +-+..+|-.+...|.+.|+.+.|+.-|--|.+.
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 2233444555677777777777777632 223455666667777777777777766666543
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.4e-10 Score=104.11 Aligned_cols=287 Identities=14% Similarity=0.037 Sum_probs=203.5
Q ss_pred HHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCC
Q 041822 186 QAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGF--RPSVVTYNIRIDGYCKKGC 262 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~ 262 (500)
.++-.....+++.+-.....+ |++-+...-+....+.....|+++|+.+|+++.+... --|..+|..++-.--.+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344444455566555555554 4555555445555555566777777777777776510 1145566555433222111
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 263 FGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDE 342 (500)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 342 (500)
+..+.+-...--+--+.|+..+.+.|+-.++.++|..+|+...+.+. -....|+.+..-|....+...|.+-++.
T Consensus 315 ----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 315 ----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred ----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11111111110123345666777788888899999999999999863 3678899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCH
Q 041822 343 MEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHG 422 (500)
Q Consensus 343 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 422 (500)
..+-++. |-..|-.|.++|.-.+...-|+-.|++..... +-|+..+.+|..+|.+.++.++|...|......| ..+.
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 9987665 88899999999999999999999999988752 3358999999999999999999999999999876 3466
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCCCHHHH--HHHHHHHHHcCchhHHHHHH
Q 041822 423 HALDLLVTGLCSRGRWEEAFECSKQMLVR----RRQVSEASY--RMLQRYLVQANANEKLEDLD 480 (500)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~ 480 (500)
..+..+.+.|-+.++.++|...|++..+. |..-+.... .-|...+.+.+++++|..+.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 88899999999999999999999887652 433332221 22455666777777766643
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2e-10 Score=103.79 Aligned_cols=86 Identities=13% Similarity=0.223 Sum_probs=68.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC-HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHH
Q 041822 70 ENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPT-PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSR 148 (500)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (500)
......-+.+++.+++|+++|.|++.. .|+ +.-|.....+|...|+|++..+.-....+..|+. ..++..-.++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y--~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY--VKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH--HHHHHHHHHH
Confidence 344556677889999999999999986 477 7778889999999999999999998888876653 3456666677
Q ss_pred HhccccHHHHHH
Q 041822 149 ISKFQSYEETLE 160 (500)
Q Consensus 149 ~~~~g~~~~a~~ 160 (500)
+-..|++++|+.
T Consensus 193 ~E~lg~~~eal~ 204 (606)
T KOG0547|consen 193 HEQLGKFDEALF 204 (606)
T ss_pred HHhhccHHHHHH
Confidence 777888887754
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=3.9e-12 Score=119.06 Aligned_cols=285 Identities=14% Similarity=0.060 Sum_probs=193.7
Q ss_pred ChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHH
Q 041822 118 YFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEA 197 (500)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 197 (500)
+..+|...|+.+....++ +.-++..+..+|-..+++++|.++|+.+.+.... .-.+.+.|.+.+-.+-+.- +
T Consensus 334 ~~~~A~~~~~klp~h~~n--t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~--rv~~meiyST~LWHLq~~v----~ 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN--TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY--RVKGMEIYSTTLWHLQDEV----A 405 (638)
T ss_pred HHHHHHHHHHhhHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cccchhHHHHHHHHHHhhH----H
Confidence 356777777776665443 2345566777777888888888888877765421 2345667777665544322 2
Q ss_pred HHHH-HHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 198 RSVF-VKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRP-SVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 198 ~~~~-~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
+..+ +.+.+..+-.+.+|..+.++|.-+++.+.|.+.|++.++. .| ...+|+.+..-+.....+|+|...|+....
T Consensus 406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 2222 2222334457778888888888888888888888887766 33 567777777777778888888888877665
Q ss_pred cCCCCCHHHHH---HHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 041822 276 VACLPSLQTIT---TLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDN 352 (500)
Q Consensus 276 ~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 352 (500)
.|...|+ .+.-.|.+.++++.|+-.|+...+.+ +-+.+....+...+-+.|+.|+|+.++++......+ |+
T Consensus 484 ----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~ 557 (638)
T KOG1126|consen 484 ----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP 557 (638)
T ss_pred ----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence 3444444 45556788888888888888888765 335666677777778888888888888887776554 44
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCC
Q 041822 353 VTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420 (500)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (500)
..---.+..+...+++++|+..++++++. .|+ ...|..+...|-+.|+.+.|..-|..+.+...++
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 33333456666778888888888888764 565 5556666777788888888888887777754333
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=2.9e-09 Score=99.74 Aligned_cols=395 Identities=10% Similarity=0.026 Sum_probs=297.2
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
+.-+|.....+ .+++.|.-++.++.+. ++-+.+.|. +|++..-++.|..++....+.-|. +...|...
T Consensus 379 sv~LWKaAVel----E~~~darilL~rAvec--cp~s~dLwl----AlarLetYenAkkvLNkaRe~ipt--d~~IWita 446 (913)
T KOG0495|consen 379 SVRLWKAAVEL----EEPEDARILLERAVEC--CPQSMDLWL----ALARLETYENAKKVLNKAREIIPT--DREIWITA 446 (913)
T ss_pred hHHHHHHHHhc----cChHHHHHHHHHHHHh--ccchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCC--ChhHHHHH
Confidence 34445444443 5677799999998874 355555544 456667789999999999987554 45677777
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CC--CCCHHhHHHHHHHH
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RF--APNNKTMNILLLGF 222 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~--~~~~~~~~~l~~~~ 222 (500)
...--..|..+...+++++-...-.......+...|-.=...|-..|..--+..+...... |+ ..-..||..-...|
T Consensus 447 a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~ 526 (913)
T KOG0495|consen 447 AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSC 526 (913)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHH
Confidence 7777888999999998887544433333788999999999999999999999988888875 42 23457899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 041822 223 KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQAR 302 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 302 (500)
.+.+.++-|..+|...++. ++-+...|......=-..|..+....+|++.... ++-....|-....-+-..|+...|.
T Consensus 527 ~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 9999999999999998876 3446778888777777789999999999999875 3445666777777788899999999
Q ss_pred HHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 041822 303 QLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK 382 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 382 (500)
.++.+..+.+. .+...|-+.+..-.....++.|..+|.+.... .|+...|.--+....-.++.++|.+++++..+.
T Consensus 605 ~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 99999998853 37788999999999999999999999988765 456677766666666678899999999888764
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 041822 383 FVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYR 461 (500)
Q Consensus 383 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 461 (500)
.|+ ...|..+.+.+-+.++++.|.+.|..-.+. ++-.+..|-.+...=-+.|..-.|..++++.+-++.. +...|-
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwl 757 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWL 757 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHH
Confidence 666 556666777777778888888877665543 2233455666666666677777777777777655432 455566
Q ss_pred HHHHHHHHcCchhHHHHHHH
Q 041822 462 MLQRYLVQANANEKLEDLDR 481 (500)
Q Consensus 462 ~l~~~~~~~~~~~~~~~~~~ 481 (500)
..|+.=.+.|..+.|..+..
T Consensus 758 e~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 66777777777777766543
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=8.6e-10 Score=97.50 Aligned_cols=288 Identities=10% Similarity=0.036 Sum_probs=233.7
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 041822 190 TQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRL 269 (500)
Q Consensus 190 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 269 (500)
..|+|.+|++...+-.+.-......|-.-..+.-+.|+.+.+-.++.+..+..-.++....-+........|+++.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 37999999999999877545556667777788889999999999999999874456777778888889999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 270 FEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDI-------GAYNAMISSLIRCRDLNAAMELMDE 342 (500)
Q Consensus 270 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~ 342 (500)
++++.+.+ +-+.........+|.+.|++.....++..+.+.|.-.+. .+|+.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99998876 456778889999999999999999999999999865443 4678888877777777776677776
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHC-CCCCC
Q 041822 343 MEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR-GFCPH 421 (500)
Q Consensus 343 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 421 (500)
...+ .+.++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ...-.+.+.++.+.-.+..+.-.+. +- +
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC--C
Confidence 6543 2335666677888999999999999999999887766662 2233456667777777777776653 43 4
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHhh
Q 041822 422 GHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQ 487 (500)
Q Consensus 422 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 487 (500)
+..+.+|...|.+.+.|.+|.+.|+... ...|+..+|+.+..++.+.|+.+.+.+..+.--...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 4688899999999999999999999777 457899999999999999999999999987766443
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=3.3e-09 Score=95.69 Aligned_cols=393 Identities=11% Similarity=0.095 Sum_probs=275.8
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHH
Q 041822 78 AAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEE 157 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 157 (500)
..+++...|..+|+.++..+ ..+...|...+..-.++..+..|..+++.....-|.. ...|-..+-.=-..|+...
T Consensus 84 esq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV--dqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV--DQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH--HHHHHHHHHHHHHhcccHH
Confidence 34667788999999999854 4566678888888889999999999999988865543 2345444444456789999
Q ss_pred HHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 158 TLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHE 237 (500)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 237 (500)
|.++|++-.. ..|+..+|++.|+.=.+-+.++.|..+|++.+- +.|++.+|--..+.=.+.|....+..+|+.
T Consensus 160 aRqiferW~~------w~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 160 ARQIFERWME------WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HHHHHHHHHc------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999988765 478899999999999999999999999998874 348888888888888888888888888887
Q ss_pred HHHC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---------------------------------------
Q 041822 238 MVLR-GF-RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV--------------------------------------- 276 (500)
Q Consensus 238 ~~~~-g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------------------------------- 276 (500)
.++. |- ..+...+.+....=.++..++.|.-+|+-..+.
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 7654 21 011222222222222233333333333322110
Q ss_pred ----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCH-------hhH---HHHHHHHHhcCCHHHHHHHHHH
Q 041822 277 ----ACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDI-------GAY---NAMISSLIRCRDLNAAMELMDE 342 (500)
Q Consensus 277 ----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~---~~li~~~~~~g~~~~a~~~~~~ 342 (500)
.-+-|-.+|-..++.-...|+.+...++|+..... ++|-. ..| |-.+-.=....+++.+.++|+.
T Consensus 313 ~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 313 KEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 01234456666666667778888888898888776 34421 112 1112222346788888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHH----HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCC
Q 041822 343 MEEKRIGHDNVTYHTMFFGL----MKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418 (500)
Q Consensus 343 ~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 418 (500)
..+. +.....||.-+=-.| .++.+...|.+++-..+ |.-|...+|...|..-.+.++++.+..+++..++.+
T Consensus 392 ~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~- 467 (677)
T KOG1915|consen 392 CLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS- 467 (677)
T ss_pred HHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 8773 333556665543333 46678888988887766 668888888888888888999999999999999876
Q ss_pred CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 419 CPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRR-RQVSEASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 419 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
+-+..+|.-....=...|+.+.|..+|+-..++. +......|...|..=...|..+.+..+++.+-..
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 3366778777777778899999999999888763 2334556677777778899999999998877554
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=1.3e-10 Score=104.00 Aligned_cols=387 Identities=11% Similarity=0.054 Sum_probs=248.9
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCC-----------CCccHHH
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHP-----------SLLTLKS 141 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~~~ 141 (500)
+.-.+.+.|+++.|+..|+..... .|+..+-..++-++..-|+.++..+.|..+..... +.++...
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 334456778888888888887765 36666655555555566788888888887765311 1111122
Q ss_pred HHHHH-----HHHhccc--cHHHHHHHHHHHHHHHhccccCCChh-------------hH--------HHHHHHHHcCCC
Q 041822 142 MSIML-----SRISKFQ--SYEETLEAFDRMEREIFVGIRKFGSE-------------EF--------NVLLQAFCTQKE 193 (500)
Q Consensus 142 ~~~l~-----~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~-------------~~--------~~ll~~~~~~~~ 193 (500)
++..+ .-..+.+ +.++++-.--++.. ++..|+-. .+ ..-...+.+.|+
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiia----pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIA----PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc----cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 22211 1111111 11111111111100 00111100 01 111245899999
Q ss_pred HHHHHHHHHHhhhC-CCCCHHhHHHHHHH-HH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 041822 194 MKEARSVFVKLLSR-FAPNNKTMNILLLG-FK-ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLF 270 (500)
Q Consensus 194 ~~~A~~~~~~m~~~-~~~~~~~~~~l~~~-~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 270 (500)
++.|.+++.-..+. .+.-...-+.|-.. |. ...++..|.++-+..+... +-+......-.+....+|++++|.+.|
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 99999999988752 22222222333222 22 2456778888776665431 112333322233445689999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 041822 271 EEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGH 350 (500)
Q Consensus 271 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 350 (500)
++....+-......|+.=+ .+-..|++++|++.|-++... +..+..+...+...|-...+..+|++++.+.... +..
T Consensus 514 keal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~ 590 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPN 590 (840)
T ss_pred HHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCC
Confidence 9998865333334444333 367789999999999877654 2336778888899999999999999999776654 444
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHH
Q 041822 351 DNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVT 430 (500)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 430 (500)
|+...+.|...|-+.|+-..|++.+-+--.. ++-+..+...|...|....-++++...|++..- +.|+..-|..|+.
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmia 667 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIA 667 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHH
Confidence 7888999999999999999998876543221 344677888888888888889999999998765 6799999998886
Q ss_pred -HHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchh
Q 041822 431 -GLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANE 474 (500)
Q Consensus 431 -~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 474 (500)
++.+.|++++|+++++....+ ++-|...+.-|++.+...|..+
T Consensus 668 sc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 456789999999999998764 5557777788888887766543
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.9e-08 Score=90.87 Aligned_cols=358 Identities=13% Similarity=0.070 Sum_probs=255.6
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHH
Q 041822 80 HSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETL 159 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 159 (500)
-|+..-|.++|+....- .|+...|.+.++.-.+....+.|..+++...-.+| ....|......=.++|....|.
T Consensus 154 LgNi~gaRqiferW~~w---~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP---~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW---EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHP---KVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred hcccHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc---cHHHHHHHHHHHHhcCcHHHHH
Confidence 46777788888777653 68888888888888888888888888888877655 3445666666667788888888
Q ss_pred HHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC--HHhHHHHHHHHHhcCCHHHHHHH---
Q 041822 160 EAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN--NKTMNILLLGFKESGDVTAMEMF--- 234 (500)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--- 234 (500)
.+|+...+.- |....+...+++....=.++..++.|.-+|+-.++.+|.+ ...|......=-+.|+.......
T Consensus 228 ~VyerAie~~--~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 228 SVYERAIEFL--GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 8888765542 2112233345555555556677888888888877766555 55566665555556665443332
Q ss_pred -----HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HccCCHH
Q 041822 235 -----YHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL-------QTITTLIHGA---GLVRNIH 299 (500)
Q Consensus 235 -----~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~---~~~~~~~ 299 (500)
|+.+++.+ +-|-.+|--.++.--..|+.+...++|++.... ++|-. ..|-.+--++ ....+.+
T Consensus 306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34444443 446777888888888889999999999998875 44422 1222222222 3567899
Q ss_pred HHHHHHHhchhCCCCCCHhhHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 041822 300 QARQLFDEMPKRNLKPDIGAYNAMISSL----IRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLY 375 (500)
Q Consensus 300 ~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 375 (500)
.+.++|+...+. ++....||..+--+| .++.++..|.+++.... |..|-..+|...|..-.+.++++.+..+|
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999988884 455666666555554 46788999999987665 55788889998998889999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCC-CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 376 DRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRG-FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 376 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
++.++.+ +-+..++.-....-...|+.+.|..+|.-+++.. +......|.+.|+-=...|.++.|..+++++.+.
T Consensus 461 Ekfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 461 EKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 9999864 3356677776666677899999999999998752 2233456777787778899999999999999865
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=3.8e-10 Score=111.93 Aligned_cols=148 Identities=11% Similarity=-0.039 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 041822 155 YEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMF 234 (500)
Q Consensus 155 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 234 (500)
+++|...+++..+. .|.+..++..+...+...|++++|...|++..+..|.+...+..+...+...|++++|...
T Consensus 320 ~~~A~~~~~~Al~l-----dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 320 MIKAKEHAIKATEL-----DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred HHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44455555444443 2334444444444444555555555555554443333444444444455555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 041822 235 YHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEM 308 (500)
Q Consensus 235 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 308 (500)
+++..+.... +...+..++..+...|++++|++.+++..+...+-+...+..+..++...|+.++|...+.++
T Consensus 395 ~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 395 INECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 5554444211 111112222223334445555555444443221112222333344444445555555444443
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=1.3e-10 Score=115.16 Aligned_cols=250 Identities=9% Similarity=-0.014 Sum_probs=178.5
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHH---------cCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhc
Q 041822 81 SNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILA---------RMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISK 151 (500)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (500)
++.++|+++|+++.+.+ |.+...+..+..++. ..+++++|...+++..+..|+ +..++..+...+..
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~--~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN--NPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHH
Confidence 34679999999999864 445556655555443 234589999999999998776 44567777778889
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHH
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAM 231 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a 231 (500)
.|++++|...|++..+. .|.+...+..+...+...|++++|...+++..+-.+.+...+..++..+...|++++|
T Consensus 351 ~g~~~~A~~~~~~Al~l-----~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 351 HSEYIVGSLLFKQANLL-----SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred ccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHH
Confidence 99999999999999887 4677889999999999999999999999999875444544555555567778999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 232 EMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS-LQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 232 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
...++++.+...+-+...+..+..++...|++++|...+.++.... |+ ....+.+...|+..| +.+...++.+.+
T Consensus 426 ~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 426 IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9999998766322245567778888899999999999999876653 44 334455555667666 467776666554
Q ss_pred CC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 311 RN-LKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 311 ~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
.. ..+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 502 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 502 SEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 31 11111222 23334445666555555 666554
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=2.1e-10 Score=101.19 Aligned_cols=203 Identities=9% Similarity=0.065 Sum_probs=133.1
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.....+..+...+...|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.+++..+..|. +...+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~ 104 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN--NGDVLNN 104 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Confidence 334555666777777888888888888777642 445666777777777888888888888877776544 3345556
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~ 224 (500)
+...+...|++++|...|++...... .+.....+..+...+...|++++|.+.+++..+..+.+...+..+...+..
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPL---YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccc---cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 66667777777777777777664310 122344556666667777777777777777665444455666666677777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 225 SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 225 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
.|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777777766655 233455555566666666777777666665544
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=2.6e-10 Score=100.58 Aligned_cols=161 Identities=12% Similarity=0.051 Sum_probs=67.3
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGF 222 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~ 222 (500)
..+...+...|++++|.+.+++..+. .+.+...+..+...+...|++++|.+.+++..+..+.+...+..+...+
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEH-----DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 33344444445555555544444333 2333444444444455555555555555544443333344444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 041822 223 KESGDVTAMEMFYHEMVLRGF-RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQA 301 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 301 (500)
...|++++|...++...+... ......+..+..++...|++++|.+.+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 444444444444444443211 1112233333344444444444444444444322 11222333333334444444444
Q ss_pred HHHHHhch
Q 041822 302 RQLFDEMP 309 (500)
Q Consensus 302 ~~~~~~~~ 309 (500)
...+++..
T Consensus 189 ~~~~~~~~ 196 (234)
T TIGR02521 189 RAYLERYQ 196 (234)
T ss_pred HHHHHHHH
Confidence 44444333
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=6.2e-09 Score=96.10 Aligned_cols=284 Identities=11% Similarity=0.051 Sum_probs=211.3
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041822 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRI 254 (500)
Q Consensus 175 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 254 (500)
..++........-+...+++.+..++++...+..++....+-.-|.++.+.|+..+...+=..+++. .+-...+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 4455566666677778888999999999888877888888888888888888888888777777776 244677888888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC--C-CCCCHhhHHHHHHHHHhcC
Q 041822 255 DGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR--N-LKPDIGAYNAMISSLIRCR 331 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~~~~~li~~~~~~g 331 (500)
--|...|+.++|.+.|.+....+- .=...|-.....|+-.|..|+|...+...-+. | ..| ..| +.--|.+.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP--~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP--SLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch--HHH--HHHHHHHhc
Confidence 888888999999999888765431 12345777778888888888888877665442 2 122 223 334577788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHcCCHhh
Q 041822 332 DLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG------KFVPKTRTVVMLMKFFCVNFRVDL 405 (500)
Q Consensus 332 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~ll~~~~~~~~~~~ 405 (500)
..+.|.+.|.+.....+. |+...+-+.......+.+.+|..+|+..... ...-...+++.|..+|.+.+++++
T Consensus 395 n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 888999988887765443 6777777777777778888888888876521 111245678888888999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041822 406 GLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLV 468 (500)
Q Consensus 406 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 468 (500)
|+..+++.+... +-+..++.++.-.|...|+++.|.+.|.+.. .+.|+..+-..++..+.
T Consensus 474 AI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 474 AIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 999999888764 4577888888888889999999999999887 66788777666665443
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=2e-12 Score=82.25 Aligned_cols=49 Identities=47% Similarity=0.802 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041822 245 PSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAG 293 (500)
Q Consensus 245 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 293 (500)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666666666666666666665554
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=8.9e-09 Score=98.84 Aligned_cols=288 Identities=14% Similarity=0.154 Sum_probs=132.1
Q ss_pred HHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc---
Q 041822 76 LFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF--- 152 (500)
Q Consensus 76 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 152 (500)
++...|++++|++.++.-... +.............+.+.|+.++|..++..+.+.+|+. ...+..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn--~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN--YDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHhhhccc
Confidence 344566666676666654432 22233344566666666666666666666666665543 23344444443111
Q ss_pred --ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHH-HHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcCCH
Q 041822 153 --QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMK-EARSVFVKLLS-RFAPNNKTMNILLLGFKESGDV 228 (500)
Q Consensus 153 --g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~~~ 228 (500)
.+.+....+++++...- |...+...+.-.+.....+. .+...+..+.. |+| .+|+.|-..|......
T Consensus 89 ~~~~~~~~~~~y~~l~~~y------p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY------PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKA 159 (517)
T ss_pred ccccHHHHHHHHHHHHHhC------ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHH
Confidence 23455555555554431 22222222222222211222 22223333332 322 2333444444433333
Q ss_pred HHHHHHHHHHHHC----C----------CCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 041822 229 TAMEMFYHEMVLR----G----------FRPSVVTY--NIRIDGYCKKGCFGDAMRLFEEMERVACLPS-LQTITTLIHG 291 (500)
Q Consensus 229 ~~a~~~~~~~~~~----g----------~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~ 291 (500)
+-...++...... | -.|+...| ..+...|...|++++|++++++..+.. |+ +..|..-.+.
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~Kari 237 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHH
Confidence 4444444443321 0 01222222 333444555566666666666555543 33 3445555555
Q ss_pred HHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH------H--HHHHHHHH
Q 041822 292 AGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVT------Y--HTMFFGLM 363 (500)
Q Consensus 292 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~--~~li~~~~ 363 (500)
+-+.|++.+|.+.++...+.+.. |-..-+..+..+.++|++++|.+++......+..|.... | .....+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 55566666666555555554422 444455555555555666666555555544432221111 1 12234455
Q ss_pred HcCChhHHHHHHHHHH
Q 041822 364 KSSGLEGVCKLYDRMI 379 (500)
Q Consensus 364 ~~g~~~~a~~~~~~~~ 379 (500)
+.|++..|++.|..+.
T Consensus 317 r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVL 332 (517)
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5555555555555443
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=3.8e-10 Score=108.98 Aligned_cols=245 Identities=10% Similarity=0.113 Sum_probs=136.8
Q ss_pred CCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCC
Q 041822 97 PHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKF 176 (500)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 176 (500)
.|+.|+..||.++|.-|+..|+.+.|- +|..|.-+. -..+...++.++......++.+.+. .|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk---------------ep 81 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK---------------EP 81 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC---------------CC
Confidence 388899999999999999999999888 888876543 3345566777777777777766553 45
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhh---CCCC----CHHhHHHH---------------HHHHHhcCCHHHHHHH
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLS---RFAP----NNKTMNIL---------------LLGFKESGDVTAMEMF 234 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~----~~~~~~~l---------------~~~~~~~~~~~~a~~~ 234 (500)
...+|..|..+|...|+...-..+=+.|.. .+.+ ....+-.+ +....-.|-++.+.++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 777899999999999986652222222221 1110 11111111 1111111222222222
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCC
Q 041822 235 YHEMVLRG-FRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNL 313 (500)
Q Consensus 235 ~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 313 (500)
+..+-... ..|. ...++-+..... -..++........-.|+..+|..++.+-..+|+.+.|..++.+|.+.|+
T Consensus 162 l~~~Pvsa~~~p~----~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPF----QVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HhhCCcccccchH----HHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 21111110 0000 001222222211 1222222221111136777777777777777777777777777777776
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 041822 314 KPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG 367 (500)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 367 (500)
+.+..-|..|+-+ .++...++.+++.|.+.|+.|+..|+..-+..+..+|.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 6666666666544 56666666777777777777777777666666665443
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=1.3e-10 Score=99.59 Aligned_cols=228 Identities=12% Similarity=0.031 Sum_probs=122.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHc
Q 041822 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQT-ITTLIHGAGL 294 (500)
Q Consensus 216 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~ 294 (500)
+.+.++|.+.|.+.+|++.++.-.+. .|-+.||..|-++|.+..++..|+.++.+-.+. .|-.+| ...+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 34555555556555555555555544 344455555555666666666666655555443 133333 2334444555
Q ss_pred cCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 041822 295 VRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKL 374 (500)
Q Consensus 295 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 374 (500)
.++.++|.++|+...+.. +.++.....+...|.-.++.+-|+..|+++.+-|+. +...|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 555666666665555542 224444444555555556666666666666665555 555555555555555566666665
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 375 YDRMIEGKFVPK--TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 375 ~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
|.+....--.|+ ...|..+-......|++..|.+.|+-.+.++ .-+...++.|.-.-.+.|++++|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 555544322233 2334444444455566666666666655543 22345555555555666666666666666553
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=4.7e-10 Score=96.26 Aligned_cols=229 Identities=10% Similarity=0.017 Sum_probs=147.9
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGF 222 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~ 222 (500)
..+.++|.+.|.+.+|.+.|+.-.+. .+-+++|-.|-++|.+-.+++.|+.+|.+-++.+|-|+....-+.+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHH
Confidence 44666777777777777777665543 455667777777777777777777777777766666666666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 041822 223 KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQAR 302 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 302 (500)
-..++.++|.++|+...+.. ..++.....+...|.-.++++-|+..|+++.+.|+ -+...|+.+.-+|.-.+++|.++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhH
Confidence 66777777777777666552 22445555555666666777777777777777774 35556666666666667777777
Q ss_pred HHHHhchhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 041822 303 QLFDEMPKRNLKPD--IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380 (500)
Q Consensus 303 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 380 (500)
.-|.+....--.|+ ..+|-.+.......||+.-|.+.|+-....+.. +...+|.|.-.-.+.|++++|..++.....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66666655432222 234555666666667777777777766655433 445666666666677777777777776654
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=1.6e-10 Score=111.43 Aligned_cols=243 Identities=14% Similarity=0.113 Sum_probs=132.3
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNI 252 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 252 (500)
..|+..+|..+|.-||..|+.+.|- +|.-|.- ..+.+...|+.++.+..+.++.+.+. .|...+|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 5667777777777777777777777 7777763 56667777777777777777766555 566777777
Q ss_pred HHHHHHhcCChhHHHHHHHH-HHH-------cCCCCCHHHHH--------------HHHHHHHccCCHHHHHHHHHhchh
Q 041822 253 RIDGYCKKGCFGDAMRLFEE-MER-------VACLPSLQTIT--------------TLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~-m~~-------~~~~~~~~~~~--------------~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
|..+|...||... ++..++ |.. .|+..-...+- ..+.-..-.|-++.+++++..+..
T Consensus 89 Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 7777777777654 222222 211 11110011110 111112233444444444444332
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH
Q 041822 311 RNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTV 390 (500)
Q Consensus 311 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 390 (500)
.... .+... .++-+... ....+++....+...-.|+..+|.+++..-...|+.+.|..++.+|++.|+..+.+-|
T Consensus 168 sa~~-~p~~v--fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 168 SAWN-APFQV--FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cccc-chHHH--HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 2110 00000 12222111 1222233322222111366677777777666677777777777777777766666666
Q ss_pred HHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCC
Q 041822 391 VMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGR 437 (500)
Q Consensus 391 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 437 (500)
..|+.+ .++...++.++..|.+.|+.|+..|+...+..+.++|.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 666544 56666666666677777777777776665555555433
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=5.3e-12 Score=80.31 Aligned_cols=50 Identities=38% Similarity=0.705 Sum_probs=39.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 210 PNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888877764
No 64
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=9.3e-09 Score=89.46 Aligned_cols=375 Identities=12% Similarity=0.123 Sum_probs=222.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhC-------------CC
Q 041822 69 VENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTH-------------PS 135 (500)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------~~ 135 (500)
+..-+..++..-|++++|+..+..+.... .++......+....--.|.+.+|.++-+...+.. .+
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 33346677778899999999999888754 4555555555555555677777777665544310 00
Q ss_pred C-----------ccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH-HHHHHcCCCHHHHHHHHHH
Q 041822 136 L-----------LTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL-LQAFCTQKEMKEARSVFVK 203 (500)
Q Consensus 136 ~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~A~~~~~~ 203 (500)
. .+...-..+.+..-..-.+++|++++.++... .+.-...|.- .-+|.+..-++-+.++++-
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d------n~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD------NPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc------ChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 0 01111222333333445678888888877654 2333334433 3456677778888888888
Q ss_pred hhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------C------------CC-----CHHHHHH
Q 041822 204 LLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRG--------------F------------RP-----SVVTYNI 252 (500)
Q Consensus 204 m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--------------~------------~~-----~~~~~~~ 252 (500)
-++.++.+....|.......+.=+-..|+.-..++.+.+ + -| -+..-..
T Consensus 211 YL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 211 YLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred HHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 777666666666665544443222122222222222211 0 00 0112234
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHccCCHHHHHHHHHhchhCCCCCCHh-hHHHHHHH
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHG-----AGLVRNIHQARQLFDEMPKRNLKPDIG-AYNAMISS 326 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~ 326 (500)
|+-.|.+.|++.+|..+.+++... .|-......+..+ ......+.-|.+.|+..-+.+..-|.. --.++...
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 555677888999998887765432 2333333333222 112223667778887776666544433 23455666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHhh
Q 041822 327 LIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVV-MLMKFFCVNFRVDL 405 (500)
Q Consensus 327 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~ 405 (500)
+.-..++|+.+..++.+..--..-|...|| +.++++..|++.+|.++|-.+....++ |..+|. .|.++|.+.+..+.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence 667778899988888887654444556655 788999999999999999777654444 344554 56667788899887
Q ss_pred HHHHHHHHHHCCCCCCHhH-HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 041822 406 GLNLWGYLIDRGFCPHGHA-LDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASY 460 (500)
Q Consensus 406 a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 460 (500)
|++++ ++..-+.+..+ ...+..-|.+.+.+--|-+.|+++... .|++..|
T Consensus 447 AW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 447 AWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 76655 44332333333 334456788889888888888888743 4555444
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=3.9e-08 Score=94.54 Aligned_cols=297 Identities=16% Similarity=0.165 Sum_probs=176.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
..-....++...|++++|++.++.-... ..............+.+.|+.++|..+++.+.+. .|.+..-|..+
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-----NPdn~~Yy~~L 78 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-----NPDNYDYYRGL 78 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHH
Confidence 3444556667888888888888664432 4444555566777788888888888888888877 35555566666
Q ss_pred HHHHHcC-----CCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 185 LQAFCTQ-----KEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV-TAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 185 l~~~~~~-----~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
..+..-. .+.+...++|+++.+.. |.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|.
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~ 154 (517)
T PF12569_consen 79 EEALGLQLQLSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYK 154 (517)
T ss_pred HHHHhhhcccccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHc
Confidence 6665222 24666777777776654 4444443333333332233 3556666667777754 35566656666
Q ss_pred hcCChhHHHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHccCCHHHHHHHHHhchhCCCCCC-HhhHH
Q 041822 259 KKGCFGDAMRLFEEMERV----A----------CLPSLQ--TITTLIHGAGLVRNIHQARQLFDEMPKRNLKPD-IGAYN 321 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~----~----------~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 321 (500)
...+..-..+++...... + -+|+.. ++..+...|...|++++|++++++..+. .|+ +..|.
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~ 232 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYM 232 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHH
Confidence 555544455555554322 1 123332 3344455566777777777777777665 233 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH--------HHHH
Q 041822 322 AMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRT--------VVML 393 (500)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--------~~~l 393 (500)
.-...|-+.|++.+|.+.++........ |...-+-.+..+.+.|++++|.+++......+..|-... ....
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC 311 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Confidence 6666777777777777777777666444 555555666666777777777777766665543332111 1233
Q ss_pred HHHHHHcCCHhhHHHHHHHHHH
Q 041822 394 MKFFCVNFRVDLGLNLWGYLID 415 (500)
Q Consensus 394 l~~~~~~~~~~~a~~~~~~~~~ 415 (500)
..+|.+.|++..|+.-|....+
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 4456666777777666666554
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.28 E-value=6.2e-07 Score=84.55 Aligned_cols=373 Identities=11% Similarity=0.054 Sum_probs=189.2
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.+.+-|.++.-++....++++|++.|..++... +-|...+.-+.-.-+..|+++.....-....+..|. ....|..
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~--~ra~w~~ 148 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS--QRASWIG 148 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--hHHHHHH
Confidence 344445555555555555666666665555532 333444444444444455555555554444444332 2234444
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHH------HHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHH
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLL------QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNIL 218 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll------~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l 218 (500)
...++--.|+...|..++++..+... ..++...|.... ....+.|..+.|.+.+..-...+......-..-
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~~---~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~k 225 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQN---TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETK 225 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhH
Confidence 44445555566666666555554421 123333332221 223444555555554444433222223333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRID-GYCKKGCFGDAM-RLFEEMERVACLPSLQTITTLIHGAGLVR 296 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~-~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 296 (500)
...+.+.+++++|..++..++.+ .||..-|...+. ++.+-.+..++. .+|....+.- +.....-..=+.......
T Consensus 226 a~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~ee 302 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEE 302 (700)
T ss_pred HHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcch
Confidence 44555556666666666665555 344444433322 232222222222 3333333211 000000000011111111
Q ss_pred CHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCHHHH--HHHHH
Q 041822 297 NIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK----R----------IGHDNVTY--HTMFF 360 (500)
Q Consensus 297 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~----------~~~~~~~~--~~li~ 360 (500)
-.+....++..+.+.|+++ ++..+...|-.-...+-..++...+... | -.|....| ..++.
T Consensus 303 l~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laq 379 (700)
T KOG1156|consen 303 LKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQ 379 (700)
T ss_pred hHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHH
Confidence 2334444555566666543 3444444443322222222222222211 1 13454444 45678
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHH
Q 041822 361 GLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWE 439 (500)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 439 (500)
.+-..|+++.|..+++..+.+ .|+ ..-|..=.+.+.+.|+++.|..++++..+.+ .+|...-.--..-..+.++.+
T Consensus 380 h~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 380 HYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccH
Confidence 888999999999999998865 666 4455555677888999999999999998876 456555445666677889999
Q ss_pred HHHHHHHHHHHcCC
Q 041822 440 EAFECSKQMLVRRR 453 (500)
Q Consensus 440 ~A~~~~~~m~~~~~ 453 (500)
+|.++.....+.|.
T Consensus 457 eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 457 EAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHhhhccc
Confidence 99999888877764
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=6.7e-07 Score=86.00 Aligned_cols=414 Identities=10% Similarity=-0.006 Sum_probs=254.8
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
..+.+|..|.-.+...|++..+.+.|+..... .--..+.|..+...+..+|.-..|..+++.-....+...+...+..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 46677777777778888888888888887763 3445667888888888888888888888887766533434444444
Q ss_pred HHHHH-hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcC-----------CCHHHHHHHHHHhhhCCCCCH
Q 041822 145 MLSRI-SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQ-----------KEMKEARSVFVKLLSRFAPNN 212 (500)
Q Consensus 145 l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------~~~~~A~~~~~~m~~~~~~~~ 212 (500)
....| .+.+.++++++.-.+................|..+.-+|... ....++++.+++..+..+.|.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 44433 345667777776666655210000123344555555555322 124567777777776444455
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 041822 213 KTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV-ACLPSLQTITTLIHG 291 (500)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~ 291 (500)
.+...+.--|+..++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+..... |. |-.....-+..
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhh
Confidence 5555555566777888888888888888765667888888888888888888888888776542 21 11111111111
Q ss_pred HHccCCHHHHHHHHHhchhC---------------------CC-------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 292 AGLVRNIHQARQLFDEMPKR---------------------NL-------KPDIGAYNAMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 292 ~~~~~~~~~a~~~~~~~~~~---------------------~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 343 (500)
-...++.+++......+..- |. .-...++..+..-... +.+.+..-.. +
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccccc-c
Confidence 11234444433332222110 00 0011122222111110 0000000000 1
Q ss_pred HHCCC--CCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHH
Q 041822 344 EEKRI--GHD------NVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLID 415 (500)
Q Consensus 344 ~~~~~--~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 415 (500)
..... .|+ ...|......+.+.++.++|...+.+..... .-....|......+...|..++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 11111 122 2345566677888889999988887776542 33355566666677788999999999998887
Q ss_pred CCCCCCHhHHHHHHHHHhcCCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhc
Q 041822 416 RGFCPHGHALDLLVTGLCSRGRWEEAFE--CSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 416 ~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (500)
.+ +-++....++..++.+.|+..-|.. ++.++.+.+. -+...|-.+...+.+.|+.+.|.+.++..-+...
T Consensus 713 ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 713 LD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred cC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 54 2245677888999999998887777 8888886653 3567788899999999999999999988877765
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.25 E-value=4.7e-07 Score=85.33 Aligned_cols=395 Identities=14% Similarity=0.107 Sum_probs=217.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHH
Q 041822 69 VENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSR 148 (500)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (500)
.+..++..| ..+++...+++.+.+++. ++--.++.....-.+...|+-++|........+. +..+...|..+.-.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHHHHHH
Confidence 344444433 455667777777776663 3444455555555566667777777766666553 33444556666555
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV 228 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~ 228 (500)
+....++++|++.|+..... .+.|...|.-+--.-.+.|+++.....-....+-.+.....|..+..++.-.|+.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~-----~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKI-----EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 66666777777777766554 3555555555555555556666665555555554444555566666666666666
Q ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHH
Q 041822 229 TAMEMFYHEMVLRG-FRPSVVTYNIRI------DGYCKKGCFGDAMRLFEEMERVACLPSLQT-ITTLIHGAGLVRNIHQ 300 (500)
Q Consensus 229 ~~a~~~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~ 300 (500)
..|..++++..+.. -.|+...+.-.. ....+.|..++|.+.+..-...- .|-.. -.+-...+.+.+++++
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHh
Confidence 66666666665542 234444432221 22334555555555554433221 12211 1223334555566666
Q ss_pred HHHHHHhchhCCCCCCHhhHHHHH-HHHHhcCCHHHHH-HHH----------------------------------HHHH
Q 041822 301 ARQLFDEMPKRNLKPDIGAYNAMI-SSLIRCRDLNAAM-ELM----------------------------------DEME 344 (500)
Q Consensus 301 a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~-~~~----------------------------------~~~~ 344 (500)
|..++..+... .||...|.... .++.+..+.-++. .+| ..+.
T Consensus 238 A~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 238 AVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 66666666554 23433333322 2222222222222 333 3333
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH--------hCC----------CCCCH--HHHHHHHHHHHHcCCHh
Q 041822 345 EKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMI--------EGK----------FVPKT--RTVVMLMKFFCVNFRVD 404 (500)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--------~~~----------~~p~~--~~~~~ll~~~~~~~~~~ 404 (500)
+.|+.+ ++..+..-|-. ..++- +++++. ..| -.|.. .++..++..+-+.|+++
T Consensus 316 ~Kg~p~---vf~dl~SLyk~---p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 316 SKGVPS---VFKDLRSLYKD---PEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred hcCCCc---hhhhhHHHHhc---hhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 333322 12222222211 11111 222221 111 13443 34456677778889999
Q ss_pred hHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHH
Q 041822 405 LGLNLWGYLIDRGFCPH-GHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMI 483 (500)
Q Consensus 405 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 483 (500)
.|...++..+++ .|+ +..|..=.+.+...|..++|..++++..+.+. +|...-..-.....++.+.++|.++...+
T Consensus 389 ~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 389 VALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 999999999885 355 34565566788889999999999999986543 55555556778888899999999888777
Q ss_pred HHhh
Q 041822 484 KNLQ 487 (500)
Q Consensus 484 ~~~~ 487 (500)
.+.+
T Consensus 466 Tr~~ 469 (700)
T KOG1156|consen 466 TREG 469 (700)
T ss_pred hhcc
Confidence 6554
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=2.4e-08 Score=94.78 Aligned_cols=237 Identities=14% Similarity=0.058 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHHHccCCHHHHHHHHHhchhC-----C--C
Q 041822 248 VTYNIRIDGYCKKGCFGDAMRLFEEMERV-----A-CLPSLQT-ITTLIHGAGLVRNIHQARQLFDEMPKR-----N--L 313 (500)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~ 313 (500)
.+...+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666677777777777776665543 1 1122222 223555666777777777777766542 1 1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhC---CC
Q 041822 314 KPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK-----RIG-HDN-VTYHTMFFGLMKSSGLEGVCKLYDRMIEG---KF 383 (500)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~ 383 (500)
+.-..+++.|..+|.+.|++++|...++...+. |.. |.+ ..++.+...+...+++++|..++....+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112345666677777778777777766654321 111 122 23455566677778888887777765421 11
Q ss_pred CCC----HHHHHHHHHHHHHcCCHhhHHHHHHHHHHC----CCC--C-CHhHHHHHHHHHhcCCCHHHHHHHHHHHHH--
Q 041822 384 VPK----TRTVVMLMKFFCVNFRVDLGLNLWGYLIDR----GFC--P-HGHALDLLVTGLCSRGRWEEAFECSKQMLV-- 450 (500)
Q Consensus 384 ~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 450 (500)
.++ ..+++.+...|...|++++|.++++.++.. +.. + ....++.+...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 456777788888888888888888777642 111 1 134566777778888888888877776543
Q ss_pred --cCC-CCC-HHHHHHHHHHHHHcCchhHHHHHHHHHH
Q 041822 451 --RRR-QVS-EASYRMLQRYLVQANANEKLEDLDRMIK 484 (500)
Q Consensus 451 --~~~-~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 484 (500)
.|. .|+ ..+|.-|...|...|++|.|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 122 3456777888888888888888776665
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.8e-08 Score=91.91 Aligned_cols=282 Identities=11% Similarity=0.073 Sum_probs=211.3
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHH
Q 041822 138 TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNI 217 (500)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 217 (500)
+......-...+-..+++.+..++++.+.+. .|+....+-.-|.++...|+..+-.-+=.++++..|-...+|-+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~a 317 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFA 317 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhh
Confidence 4445666667777888899999998888877 57888888888888888888888888888888888888889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHc
Q 041822 218 LLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV--AC-LPSLQTITTLIHGAGL 294 (500)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~-~~~~~~~~~ll~~~~~ 294 (500)
+.-.|.-.|+..+|++.|.+.....-. =...|-.+...|+-.|..++|+..+...-+. |. .|. .| +.--|.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LY--lgmey~~ 392 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LY--LGMEYMR 392 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HH--HHHHHHH
Confidence 988888889999999998887655211 2456888888888889999998888776552 21 121 12 2234677
Q ss_pred cCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHHcCCh
Q 041822 295 VRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK----RIG--HDNVTYHTMFFGLMKSSGL 368 (500)
Q Consensus 295 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~ 368 (500)
.++.+.|.++|.+..... +.|+.+.+-+.-.....+.+.+|..+|+..... +.+ .-..+++.|..+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 888999999998887763 457778888877777888888998888876522 111 1345677788888999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 041822 369 EGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLC 433 (500)
Q Consensus 369 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 433 (500)
++|+..+++..... +-+..++.++.-.+...|+++.|.+.|.+.+- +.|+..+-..++..+.
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 99999998887653 44677888888888888999999999888776 4577666556655443
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=5.6e-09 Score=99.00 Aligned_cols=239 Identities=14% Similarity=0.142 Sum_probs=120.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhh-----CCCCcc-HHHHHHHHHHHhccccHHHHHHHHHHHHHH--Hhccc-cCC
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRT-----HPSLLT-LKSMSIMLSRISKFQSYEETLEAFDRMERE--IFVGI-RKF 176 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~-~~~ 176 (500)
...+...|...|+++.|..++++..+. +-..+. ....+.+...|...+++++|..+|+++... ...|. .+.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333555555555555555555554443 001111 112223444555555555555555554321 11111 222
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhh---C----CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLS---R----FAPNN-KTMNILLLGFKESGDVTAMEMFYHEMVLR---GFRP 245 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~----~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~~ 245 (500)
-..+++.|..+|.+.|++++|...++...+ . ..|.+ ..++.+...+...++++.|..++....+. -+.+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 334555566666666666555555555442 1 11222 22444555555666666666665544332 1111
Q ss_pred ----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHccCCHHHHHHHHHhchh----
Q 041822 246 ----SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA-------CLPSLQTITTLIHGAGLVRNIHQARQLFDEMPK---- 310 (500)
Q Consensus 246 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---- 310 (500)
-..+++.|...|.+.|++++|.+++++..+.. ..-....++.|...|.+.++++.|.++|.+...
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 13456666677777777777777766654321 111233455566666666666666666554322
Q ss_pred CC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 311 RN--LKPDIGAYNAMISSLIRCRDLNAAMELMDEME 344 (500)
Q Consensus 311 ~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 344 (500)
.| .+-...+|..|...|...|++++|.++.+.+.
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 12234567777777777777777777766554
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=1.2e-08 Score=83.67 Aligned_cols=197 Identities=14% Similarity=0.053 Sum_probs=136.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhc
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISK 151 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (500)
-|.-.|...|++..|..-++++++.+ |-+..++..+...|.+.|..+.|.+.|+...+..|+.- .++|.....+|.
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G--dVLNNYG~FLC~ 115 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG--DVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc--chhhhhhHHHHh
Confidence 44455677788888888888877764 45566777777777788888888888887777765533 356666666777
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHH
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAM 231 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a 231 (500)
.|++++|...|++....-. .+.-..+|..+.-+..+.|+++.|.+.|++.++..+....+.-.+.....+.|++..|
T Consensus 116 qg~~~eA~q~F~~Al~~P~---Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERALADPA---YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHHHhCCC---CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 7777777777777665422 3344556777777777777777777777777765566666677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041822 232 EMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 232 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
..+++.....|. ++..+.-..|+.-...|+.+.+-++=.++.+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 777777766654 66666666677666777777766665555543
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=2.4e-08 Score=90.73 Aligned_cols=88 Identities=10% Similarity=-0.043 Sum_probs=38.4
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD 227 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~ 227 (500)
.|...|+.++|...|++..+. .|.+..+|+.+...+...|++++|...|++..+-.+.+..+|..+..++...|+
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALAL-----RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 344444444444444444333 233344444444444444444444444444443323334444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 041822 228 VTAMEMFYHEMVL 240 (500)
Q Consensus 228 ~~~a~~~~~~~~~ 240 (500)
+++|.+.++...+
T Consensus 148 ~~eA~~~~~~al~ 160 (296)
T PRK11189 148 YELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=2.5e-08 Score=81.93 Aligned_cols=198 Identities=13% Similarity=0.064 Sum_probs=166.5
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
+...+.-.|...|+...|..-+++..+..|+ ...++..+...|.+.|+.+.|.+.|++.... .|.+..+.|..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-----~p~~GdVLNNY 109 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSL-----APNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----CCCccchhhhh
Confidence 4556777888999999999999999998766 5567888888899999999999999998877 57788899999
Q ss_pred HHHHHcCCCHHHHHHHHHHhhh--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041822 185 LQAFCTQKEMKEARSVFVKLLS--RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC 262 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 262 (500)
...+|..|++++|...|++... .+..-..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.....+.|+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGD 188 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhccc
Confidence 9999999999999999999886 456667889999999999999999999999988773 2245567778888899999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 263 FGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
+..|...++.....+. ++..+.-..|+.-...|+-+.+.++=.++.+.
T Consensus 189 y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 189 YAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred chHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999888775 78888888888888889988888776666654
No 75
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=1.8e-06 Score=81.37 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHhchhCCCCCC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcC
Q 041822 296 RNIHQARQLFDEMPKRNLKPD------IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHD---NVTYHTMFFGLMKSS 366 (500)
Q Consensus 296 ~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g 366 (500)
|+..+-...|.+..+. +.|. ...|..+...|-+.|+++.|..+|++..+...+-- ..+|..-...=.++.
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 4455555555555443 1221 23577788888888999999999988776533211 233444444445667
Q ss_pred ChhHHHHHHHHHHhCCCC----------C-------CHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCC
Q 041822 367 GLEGVCKLYDRMIEGKFV----------P-------KTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRG 417 (500)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~----------p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 417 (500)
+++.|++++++.....-. | +...|...+..--..|-++....+++.+++..
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 788888877766431111 1 11223333333344466666667777666644
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.1e-06 Score=76.69 Aligned_cols=269 Identities=11% Similarity=0.060 Sum_probs=148.7
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIR 253 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 253 (500)
.+-|+.....+.+.+...|+.++|+..|++...-.+-+........-.+.+.|+.+....+...+.... +-+...|-.-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 355566666666666666666666666666654222222222222333345566665555555554331 1123333333
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCH
Q 041822 254 IDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDL 333 (500)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 333 (500)
.......++++.|+.+-++..+.+ +-+...|-.-...+...++.++|.-.|+..+... +.+...|..|+.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 334445566666666666666543 1223333333445566677777777776665542 23566777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-HcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHH
Q 041822 334 NAAMELMDEMEEKRIGHDNVTYHTMF-FGLM-KSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLW 410 (500)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 410 (500)
.+|.-+-++..+. ...+..+.+.+. ..+. .-..-++|.+++++... +.|+ ....+.+...|...|..+.+..++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 7766555443332 111333333221 1111 11234566666666543 3555 445556666667777777777777
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 411 GYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 411 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
+..+.. .||....+.|.+.+...+.+++|++.|.....
T Consensus 462 e~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 462 EKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 776663 46666777777777777777777777776654
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.1e-07 Score=81.89 Aligned_cols=289 Identities=12% Similarity=0.029 Sum_probs=211.4
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHH
Q 041822 80 HSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETL 159 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 159 (500)
.++...|...+-.+....-++-|......+.+.+...|+..+|+..|+.....+|...+ ......-.+.+.|++++..
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~--~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE--AMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh--hHHHHHHHHHhccCHhhHH
Confidence 34444455444444444356778888999999999999999999999999887665433 3333444466788888887
Q ss_pred HHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 160 EAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239 (500)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (500)
.+...+-.. .+.....|..-+......++++.|+.+-++..+-.+.+...|-.-...+...++.++|.-.|...+
T Consensus 287 ~L~~~Lf~~-----~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 287 ALMDYLFAK-----VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred HHHHHHHhh-----hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 777766544 344566677777777888899999998888886555677777777778888999999999998877
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHc-cCCHHHHHHHHHhchhCCCCCC-
Q 041822 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLI-HGAGL-VRNIHQARQLFDEMPKRNLKPD- 316 (500)
Q Consensus 240 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~~-~~~~~~a~~~~~~~~~~~~~~~- 316 (500)
... +-+..+|..|+.+|...|++.+|.-+-+...+. .+-+..+.+.+. ..|.- ..--++|.++++.-.+. .|+
T Consensus 362 ~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y 437 (564)
T KOG1174|consen 362 MLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIY 437 (564)
T ss_pred hcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCcc
Confidence 652 247889999999999999999988766554332 123444544442 22222 22357888888887775 333
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 317 IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
....+.+...+...|+.++++.+++..... .||....+.|.+.+...+.+.+|++.|......
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 445677778888899999999999887654 578889999999999999999999999887764
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=8.1e-07 Score=77.66 Aligned_cols=381 Identities=10% Similarity=-0.003 Sum_probs=199.6
Q ss_pred HhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHH
Q 041822 77 FAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYE 156 (500)
Q Consensus 77 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (500)
+....++..|+.+++...... -.....+-.-+...+-+.|++++|...++-+... +..+...+..+..++--.|.+.
T Consensus 32 fls~rDytGAislLefk~~~~-~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLD-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHhcccchhHHHHHHHhhccc-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHH
Confidence 345678999999998877542 1222223334455567889999999999998874 2334445555666666678899
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYH 236 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 236 (500)
+|..+-.+. +.++-.-..+.....+.++-++-..+...+.+ ...---+|.......-.+.+|..+|.
T Consensus 109 eA~~~~~ka---------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 109 EAKSIAEKA---------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHhhC---------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 988775543 33333444555555666776666665555543 12222333444444445778888888
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--CCH---------------
Q 041822 237 EMVLRGFRPSVVTYNIRID-GYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLV--RNI--------------- 298 (500)
Q Consensus 237 ~~~~~g~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~~~--------------- 298 (500)
..... .|+-...|..+. +|.+..-++-+.+++.-..+.- +-++...|.......+. |+.
T Consensus 176 rvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 176 RVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred HHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 77766 345555555443 4556666777777776655532 22233333332222221 111
Q ss_pred ------------------HHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--
Q 041822 299 ------------------HQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTM-- 358 (500)
Q Consensus 299 ------------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 358 (500)
+.|++++-.+.+. - +..-..|+--|.+.+++.+|..+.+++.-. .|-......+
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~ 326 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVF 326 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHH
Confidence 1111111111110 0 112234555677788888888776654321 1111111111
Q ss_pred ---------------------------------------HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 041822 359 ---------------------------------------FFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCV 399 (500)
Q Consensus 359 ---------------------------------------i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 399 (500)
...+.-..++++++-.+..+..--..-|...| .+.++.+.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHH
Confidence 11111222233333333333322111122222 35566667
Q ss_pred cCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCchhHHHH
Q 041822 400 NFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASY-RMLQRYLVQANANEKLED 478 (500)
Q Consensus 400 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ 478 (500)
.|++.+|+++|-.+....++.+..-...+.++|.+.+..+.|.+++-++ +-..+..+. ..+..-|.+++.+=-+.+
T Consensus 406 tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAK 482 (557)
T ss_pred hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766655444433333344556777777777777665554 222222222 344566666666666666
Q ss_pred HHHHHHHh
Q 041822 479 LDRMIKNL 486 (500)
Q Consensus 479 ~~~~~~~~ 486 (500)
.+.+++..
T Consensus 483 AFd~lE~l 490 (557)
T KOG3785|consen 483 AFDELEIL 490 (557)
T ss_pred hhhHHHcc
Confidence 66666655
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.17 E-value=5.1e-07 Score=85.23 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=8.5
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 041822 361 GLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~ 379 (500)
++...|+.++|..+++.+.
T Consensus 273 ~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 273 ALAGAGDKDALDKLLAALK 291 (355)
T ss_pred HHhcCCCHHHHHHHHHHHH
Confidence 3344444444444444443
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=7.4e-08 Score=87.58 Aligned_cols=222 Identities=11% Similarity=0.005 Sum_probs=150.3
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHH
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAM 231 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a 231 (500)
.++.+.++..+.++....... .......|..+...+...|++++|...|++..+..+.+...|+.+...+...|+++.|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~-~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLT-DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCC-cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 345666666666666432100 1112456888888899999999999999999887777889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 232 EMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 232 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
...|+...+.. +-+..+|..+..++...|++++|++.|++..+.. |+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999998763 2246777888888889999999999999988765 44332222222344567899999998765543
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 041822 312 NLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK---RIG---HDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK 382 (500)
Q Consensus 312 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 382 (500)
. .++... ..+ .....|+.+.+ +.+..+.+. .+. .....|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~~~~-~~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWG-WNI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccH-HHH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 222222 222 22335555444 344444422 110 123467778888888888888888888888654
No 81
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.17 E-value=4.2e-06 Score=79.00 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhC-----CCCccHHHHH
Q 041822 69 VENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTH-----PSLLTLKSMS 143 (500)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 143 (500)
+|...++....++-|+.++.++++.++- ++..-...+..+++.+++++|.+.+..+.... ....+...|.
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 3444444444444555555555554432 22334444555555555555555555444311 0111233333
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCC--hhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFG--SEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
.+-...+++.+.-.-+.+ +.+.+.|.. .-+| ...|++|.+-|.+.|.+++|.++|++...
T Consensus 215 elcdlis~~p~~~~slnv-daiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNV-DAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHHHhCcchhcccCH-HHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 333333333333332222 222222211 1112 12477778888888888888888887765
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.16 E-value=4.3e-07 Score=85.70 Aligned_cols=302 Identities=9% Similarity=-0.011 Sum_probs=169.7
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChh---hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE---EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNI 217 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 217 (500)
.+..+...+...|+.+.+.+.+.+..+.. +.+.. ........+...|++++|.+.+++..+..|.|...+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQAL-----AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHh-----ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 33444455556677777766666665543 22222 22233445567788888888888888765656655553
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041822 218 LLLGFKE----SGDVTAMEMFYHEMVLRGFRPS-VVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGA 292 (500)
Q Consensus 218 l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 292 (500)
...+.. .+..+.+.+.+.. ..+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 222222 3444445544443 1122333 3344455567778888888888888888765 34456677777888
Q ss_pred HccCCHHHHHHHHHhchhCCC-CCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHHc
Q 041822 293 GLVRNIHQARQLFDEMPKRNL-KPDI--GAYNAMISSLIRCRDLNAAMELMDEMEEKRI-GHDNVTY-H--TMFFGLMKS 365 (500)
Q Consensus 293 ~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~ 365 (500)
...|++++|...+++..+... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 888888888888888776532 1222 2355677778888888888888888754322 1111111 1 222333334
Q ss_pred CChhHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCC---C-----CHhHHHHHHHHHh
Q 041822 366 SGLEGVCKL--YDRMIEGKF--VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFC---P-----HGHALDLLVTGLC 433 (500)
Q Consensus 366 g~~~~a~~~--~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~-----~~~~~~~li~~~~ 433 (500)
|....+.+. +........ ......-.....++...|+.+.|..+++.+...... - .....-....++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 433333222 111111100 111122224556667778888888888887653211 0 1111222233456
Q ss_pred cCCCHHHHHHHHHHHHHc
Q 041822 434 SRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 434 ~~g~~~~A~~~~~~m~~~ 451 (500)
..|++++|.+.+.+....
T Consensus 319 ~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 319 AEGNYATALELLGPVRDD 336 (355)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 788888888888777643
No 83
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.7e-08 Score=90.36 Aligned_cols=221 Identities=14% Similarity=0.097 Sum_probs=138.0
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHH
Q 041822 78 AAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEE 157 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 157 (500)
.-.|++..|.+.|+.++..+ +.+...|..+..+|....+.++.++.|......+|..++ +|..-...+.-.+++++
T Consensus 337 fL~g~~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--vYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--VYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhcCCchhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc--hhHhHHHHHHHHHHHHH
Confidence 34677777888888777753 223333777777778888888888888887777666554 34444444555677777
Q ss_pred HHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 158 TLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHE 237 (500)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 237 (500)
|..-|++.... .|.+...|.-+.-+..+.+++++++..|++.++++|.-+..|+.....+...++++.|.+.|+.
T Consensus 413 A~aDF~Kai~L-----~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 413 AIADFQKAISL-----DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHhhc-----ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 87777777655 4556666777777777777788888888888777777777888888888888888888887777
Q ss_pred HHHCCCC-----CC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhch
Q 041822 238 MVLRGFR-----PS--VVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMP 309 (500)
Q Consensus 238 ~~~~g~~-----~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 309 (500)
.++.... .+ ..+..+++-.- -.+++..|.+++++..+.+ +-....|.+|...-.+.|++++|+++|++..
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7654111 11 11111111111 1255555666665555543 1233445555555555555555555555443
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=2.9e-06 Score=79.29 Aligned_cols=385 Identities=11% Similarity=0.087 Sum_probs=194.1
Q ss_pred HHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHH-HHHHHHHhcccc
Q 041822 76 LFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSM-SIMLSRISKFQS 154 (500)
Q Consensus 76 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~ 154 (500)
.+...+++++|++...+++.. .+-+...+..-+-++...++|++|..+.+.-... .....+ ..-.-+..+.+.
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~----~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL----LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh----hhcchhhHHHHHHHHHccc
Confidence 345677888888888888764 3556666777777777888888888665543321 111111 112223446778
Q ss_pred HHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCH----------------------
Q 041822 155 YEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNN---------------------- 212 (500)
Q Consensus 155 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~---------------------- 212 (500)
.++|+..++-. .+.+..+...-...+.+.|++++|.++|+.+.++..++.
T Consensus 95 ~Dealk~~~~~--------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 95 LDEALKTLKGL--------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HHHHHHHHhcc--------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 88888877732 233444555556667778888888888877754322111
Q ss_pred ------HhHHHH---HHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHH-------HHHHHHHHHHhcCChhHHHHH
Q 041822 213 ------KTMNIL---LLGFKESGDVTAMEMFYHEMVLRGF-------RPSVV-------TYNIRIDGYCKKGCFGDAMRL 269 (500)
Q Consensus 213 ------~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~g~-------~~~~~-------~~~~li~~~~~~g~~~~a~~~ 269 (500)
.+|..+ ...+...|++..|+++++...+.|. .-+.. .-.-|..++-..|+.++|.++
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 122222 2334455666666666665522210 00000 111233344455666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH---HHccCC-HH-HHHHHHHhch-----------------------------------
Q 041822 270 FEEMERVACLPSLQTITTLIHG---AGLVRN-IH-QARQLFDEMP----------------------------------- 309 (500)
Q Consensus 270 ~~~m~~~~~~~~~~~~~~ll~~---~~~~~~-~~-~a~~~~~~~~----------------------------------- 309 (500)
+....+.. .+|........+- ...-.+ ++ .++..++...
T Consensus 247 y~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 247 YVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 66666554 2333211111111 111000 00 0000000000
Q ss_pred ------h-CCCCCCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH----
Q 041822 310 ------K-RNLKPDIGAYNAMISSLIRC--RDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYD---- 376 (500)
Q Consensus 310 ------~-~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~---- 376 (500)
. .+..| ...+.+++....+. ....++.+++...-+....-.....-+++......|+++.|.+++.
T Consensus 326 ~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 326 VRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 0 00011 11222222222211 1244455555554444332223444455666777888888888887
Q ss_pred ----HHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHC--CCCCCHhH----HHHHHHHHhcCCCHHHHHHHHH
Q 041822 377 ----RMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR--GFCPHGHA----LDLLVTGLCSRGRWEEAFECSK 446 (500)
Q Consensus 377 ----~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~ 446 (500)
.+.+.+..| .+...+...+.+.++-+.|..++...+.. .-.+.... +.-+...-.+.|+.++|..+++
T Consensus 405 ~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 405 SWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 444444444 33444555666777766777777766641 11111122 2223333345688888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHH
Q 041822 447 QMLVRRRQVSEASYRMLQRYLVQANANEKLEDLD 480 (500)
Q Consensus 447 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 480 (500)
++.+.. .+|..+...++.+|.+. +.+.+..+-
T Consensus 483 el~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 483 ELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 888643 35677777777777654 344444443
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6.1e-07 Score=82.87 Aligned_cols=367 Identities=13% Similarity=0.065 Sum_probs=211.6
Q ss_pred HHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccH
Q 041822 76 LFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSY 155 (500)
Q Consensus 76 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (500)
.....|+++.|+..|..++..+ |+|...|..-..++++.|++++|.+=-.+..+..|+... .|.....++.-.|++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~k--gy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAK--GYSRKGAALFGLGDY 86 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhh--HHHHhHHHHHhcccH
Confidence 4456899999999999998864 668888999999999999999999888888887776553 677888888889999
Q ss_pred HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHH------HHhhh----CCCCCHHhHHHHHHHHHhc
Q 041822 156 EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVF------VKLLS----RFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~------~~m~~----~~~~~~~~~~~l~~~~~~~ 225 (500)
++|+..|.+-.+. .+.+...++-+..++..... +.+.| ..... +.......|..++...-+.
T Consensus 87 ~eA~~ay~~GL~~-----d~~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 87 EEAILAYSEGLEK-----DPSNKQLKTGLAQAYLEDYA---ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred HHHHHHHHHHhhc-----CCchHHHHHhHHHhhhHHHH---hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 9999999887665 35566666666666511100 01111 00000 0001112222222222111
Q ss_pred C-------CHHHHHHHHHHHHH--------CCC-------CC----------------------CHHHHHHHHHHHHhcC
Q 041822 226 G-------DVTAMEMFYHEMVL--------RGF-------RP----------------------SVVTYNIRIDGYCKKG 261 (500)
Q Consensus 226 ~-------~~~~a~~~~~~~~~--------~g~-------~~----------------------~~~~~~~li~~~~~~g 261 (500)
. +.+...+....+.. .|. .| -..-...+.++..+..
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 0 00111111111100 000 01 0111344556666666
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCC--C----HhhHHHHHHHHHhcCCHHH
Q 041822 262 CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKP--D----IGAYNAMISSLIRCRDLNA 335 (500)
Q Consensus 262 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~li~~~~~~g~~~~ 335 (500)
+++.|++.+....... -+..-++....+|...|.+..+...-....+.|... + ...+..+..+|.+.++++.
T Consensus 239 ~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred hHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 6666666666665543 233334444455666665555554444444433211 0 1122223445555566666
Q ss_pred HHHHHHHHHHCCCCCCHHH-------------------------HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH
Q 041822 336 AMELMDEMEEKRIGHDNVT-------------------------YHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTV 390 (500)
Q Consensus 336 a~~~~~~~~~~~~~~~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 390 (500)
|+..|.+....-..|+... ...-...+.+.|++..|++.|.+++... +-|...|
T Consensus 317 ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lY 395 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLY 395 (539)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHH
Confidence 6666655433322222111 0111345667889999999999988764 4457888
Q ss_pred HHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 041822 391 VMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASY 460 (500)
Q Consensus 391 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 460 (500)
..-.-+|.+.|.+..|+.=.+..++.. ++....|.-=..++....++++|.+.|.+..+.. |+..-+
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~ 462 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEA 462 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHH
Confidence 888888888899888888777777753 2233445444555666678888888888887543 555444
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=3e-07 Score=78.38 Aligned_cols=289 Identities=12% Similarity=0.110 Sum_probs=168.0
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
.+..+.+..++..|++++..-.++. +.+...+..+..+|-+..++..|-+.++++....|....+..|. ...+-+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~--AQSLY~A 91 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ--AQSLYKA 91 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH--HHHHHHh
Confidence 3444566778888888887776653 33666777777888888888888888888888766554444432 3345577
Q ss_pred ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcCCHHHH
Q 041822 153 QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAM 231 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~~~~~a 231 (500)
+.+.+|+++...|.+.. ..-..+...-.......+++..+..+.++... + +..+.+.......+.|+++.|
T Consensus 92 ~i~ADALrV~~~~~D~~-----~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNP-----ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred cccHHHHHHHHHhcCCH-----HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 88888888887775321 00011111111223456777778877777763 3 555666666666788888888
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-------------CCHH--------------
Q 041822 232 EMFYHEMVLR-GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACL-------------PSLQ-------------- 283 (500)
Q Consensus 232 ~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------------~~~~-------------- 283 (500)
.+-|+...+. |.. ....||..+. +.+.|+++.|+++..++.++|++ ||+.
T Consensus 164 vqkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 8888887776 454 4566775544 44678888888888888887742 1111
Q ss_pred -HHHHHHHHHHccCCHHHHHHHHHhchhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041822 284 -TITTLIHGAGLVRNIHQARQLFDEMPKRN-LKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFG 361 (500)
Q Consensus 284 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 361 (500)
.+|.-...+.+.|+++.|.+.+-.|.-+. ...|++|...+.-.-. .+++.+..+-+.-+.+.++- ...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 11111122345556666666665554322 2344555544332211 12333333333333333332 33455555556
Q ss_pred HHHcCChhHHHHHHHH
Q 041822 362 LMKSSGLEGVCKLYDR 377 (500)
Q Consensus 362 ~~~~g~~~~a~~~~~~ 377 (500)
||++.-++-|-+++.+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 6666656655555543
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=2.8e-05 Score=75.22 Aligned_cols=391 Identities=13% Similarity=0.008 Sum_probs=238.7
Q ss_pred HhhcCChHHHHHH----HHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 77 FAAHSNGLKALEF----FKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 77 ~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
++...+.+++.-. +.++... .+..++..|..+.-++.+.|+++.+.+.|++...- .......|..+...|...
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~-~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saa 370 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLK-KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAA 370 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHh-hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHh
Confidence 4444455555433 2333332 35678999999999999999999999999998763 223456788888889999
Q ss_pred ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc-CCCHHHHHHHHHHhhh--C---CCCCHHhHHHHHHHHHhc-
Q 041822 153 QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT-QKEMKEARSVFVKLLS--R---FAPNNKTMNILLLGFKES- 225 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~A~~~~~~m~~--~---~~~~~~~~~~l~~~~~~~- 225 (500)
|.-..|..+++.-..... .+.+...+-..-+.|.+ .+..++++++-.+..+ + -.-....|..+.-+|...
T Consensus 371 g~~s~Av~ll~~~~~~~~---~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A 447 (799)
T KOG4162|consen 371 GSDSKAVNLLRESLKKSE---QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA 447 (799)
T ss_pred ccchHHHHHHHhhccccc---CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh
Confidence 999999999887654420 14445555555555554 4667777776666654 1 112333444444444321
Q ss_pred ---C-------CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 041822 226 ---G-------DVTAMEMFYHEMVLRG-FRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGL 294 (500)
Q Consensus 226 ---~-------~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 294 (500)
. ...++.+.+++.++.+ -.|+...| +.--|+..++.+.|++..++..+.+-.-+...|..+.-.+..
T Consensus 448 ~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa 525 (799)
T KOG4162|consen 448 RQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSA 525 (799)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 1 1246778888887774 33444433 334566788999999999999987656788899999999999
Q ss_pred cCCHHHHHHHHHhchhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------CC----
Q 041822 295 VRNIHQARQLFDEMPKR-NLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK---------------------RI---- 348 (500)
Q Consensus 295 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------------~~---- 348 (500)
.+++.+|+.+.+...+. |. |-.....-+..-...++.+++......+... |.
T Consensus 526 ~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~ 603 (799)
T KOG4162|consen 526 QKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLAL 603 (799)
T ss_pred hhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCc
Confidence 99999999998876553 21 1111111111122244555544443322110 00
Q ss_pred ---CCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHHHcCCHhhHHHHHHHHH
Q 041822 349 ---GHDNVTYHTMFFGLMKSS---GLEGVCKLYDRMIEGKFVP--K------TRTVVMLMKFFCVNFRVDLGLNLWGYLI 414 (500)
Q Consensus 349 ---~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p--~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 414 (500)
.-...++..+..-....+ ..+.. +....+.| + ...+......+.+.+..++|...+.+..
T Consensus 604 ~q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 604 SQPTDAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS 677 (799)
T ss_pred ccccccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 001122222221111110 11111 22222222 2 2234455566778899999988888887
Q ss_pred HCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCchhHHHH--HHHHHHHh
Q 041822 415 DRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS-EASYRMLQRYLVQANANEKLED--LDRMIKNL 486 (500)
Q Consensus 415 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~ 486 (500)
+.. .-....|......+...|.+++|.+.|..... +.|+ ......+..++...|+...+.. +...+-+.
T Consensus 678 ~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 678 KID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred hcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 753 34566777777888899999999999999885 3454 3455788889999997776666 44444333
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=6.6e-06 Score=87.98 Aligned_cols=341 Identities=11% Similarity=-0.014 Sum_probs=213.5
Q ss_pred HHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccc--cCC--ChhhHHHHHH
Q 041822 111 HILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGI--RKF--GSEEFNVLLQ 186 (500)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~--~~~~~~~ll~ 186 (500)
..+...|+++.+..+++.+...... .+..........+...|++++|...++.......... ..+ .......+..
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~-~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLL-ENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHh-cCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 3445667888877777766432100 0111223334445677999999999887754311000 001 1122233345
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCC-C----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHH
Q 041822 187 AFCTQKEMKEARSVFVKLLSRFAP-N----NKTMNILLLGFKESGDVTAMEMFYHEMVLR----GF-RPSVVTYNIRIDG 256 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~ 256 (500)
.+...|++++|...+++..+..+. + ....+.+...+...|+++.|...+++.... |- .....++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 567899999999999998753222 1 134566667778899999999998887653 21 1112344556677
Q ss_pred HHhcCChhHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCC--CCC--CHhhHHHHHH
Q 041822 257 YCKKGCFGDAMRLFEEMER----VACL--P-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRN--LKP--DIGAYNAMIS 325 (500)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~----~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~ 325 (500)
+...|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 8889999999999888654 2211 1 22334455566777899999999988775531 111 2334555667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHH
Q 041822 326 SLIRCRDLNAAMELMDEMEEKRIGH-DNVTY-----HTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKT---RTVVMLMKF 396 (500)
Q Consensus 326 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~ 396 (500)
.+...|+.++|.+.++......... ....+ ...+..+...|+.+.|.+.+............ .....+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7888999999999998875421100 11111 11224455688999999998775542211111 113456667
Q ss_pred HHHcCCHhhHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 041822 397 FCVNFRVDLGLNLWGYLIDR----GFCPH-GHALDLLVTGLCSRGRWEEAFECSKQMLVRR 452 (500)
Q Consensus 397 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 452 (500)
+...|+.++|...+++.... |...+ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 78889999999999988753 33322 2456667788899999999999999998753
No 89
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=2.2e-05 Score=77.96 Aligned_cols=315 Identities=13% Similarity=0.124 Sum_probs=176.4
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCC-CCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHh
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHP-HFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRIS 150 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (500)
+-..++-..+-+.+-++++++..-.+ .|.-+...-+.++-...+. +..+..+..+++..- +.+ .+.....
T Consensus 989 ~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdny--Da~------~ia~iai 1059 (1666)
T KOG0985|consen 989 VTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNY--DAP------DIAEIAI 1059 (1666)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccC--Cch------hHHHHHh
Confidence 34455666778888888888876542 2333333344444444444 344555555544321 111 1233345
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTA 230 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (500)
..+-+++|..+|++.. .+..+.+.|+.- -+..+.|.+.-++.- ....|..+.++-.+.|.+.+
T Consensus 1060 ~~~LyEEAF~ifkkf~---------~n~~A~~VLie~---i~~ldRA~efAe~~n-----~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFD---------MNVSAIQVLIEN---IGSLDRAYEFAERCN-----EPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred hhhHHHHHHHHHHHhc---------ccHHHHHHHHHH---hhhHHHHHHHHHhhC-----ChHHHHHHHHHHHhcCchHH
Confidence 6677788888877652 233344444432 345566665554443 45667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 231 MEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 231 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
|.+-|- +. -|+..|..+++...+.|.|++-.+.+...++..-+|... +.++-+|++.++..+..+++.
T Consensus 1123 AieSyi---ka---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---- 1190 (1666)
T KOG0985|consen 1123 AIESYI---KA---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---- 1190 (1666)
T ss_pred HHHHHH---hc---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc----
Confidence 665442 21 166677777777777777777777776666655444433 456667777777666555442
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH
Q 041822 311 RNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTV 390 (500)
Q Consensus 311 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 390 (500)
.||......+.+-|...|.++.|.-+|. ++..|..|...+...|++..|.+.-++. .+..||
T Consensus 1191 ---gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktW 1252 (1666)
T KOG0985|consen 1191 ---GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTW 1252 (1666)
T ss_pred ---CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHH
Confidence 3566666666666777777777666664 4444566666666667766666554432 234555
Q ss_pred HHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 041822 391 VMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQ 447 (500)
Q Consensus 391 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 447 (500)
..+..+|...+.+..| +|....+.....-...++.-|-..|-+++.+.+++.
T Consensus 1253 K~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 5555555554443322 222222333333444555555555555555555443
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=3.6e-06 Score=72.02 Aligned_cols=290 Identities=16% Similarity=0.166 Sum_probs=125.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHH-HH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFN-VL 184 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~l 184 (500)
+.+++..+.+-.++..|++++....+..|. +...+..+..+|-...++..|-+.++++... .|...-|. .-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQL------HPELEQYRLYQ 84 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ChHHHHHHHHH
Confidence 444455555555555555555555444322 3334444555555555555555555555332 12222221 12
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLL--GFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC 262 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 262 (500)
...+.+.+.+.+|+++...|.+. ++...-..-+. .....+++..++.++++....| +..+.+.......+.|+
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 33344455555555555555431 11111111111 1223445555555555444322 33333333333445555
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCC-------------C-------------
Q 041822 263 FGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKP-------------D------------- 316 (500)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~------------- 316 (500)
++.|.+-|+...+-+---....|+..+. ..+.|+++.|++...++.++|++- |
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 5555555555554332223334444332 334455555555555555544321 1
Q ss_pred --HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 041822 317 --IGAYNAMISSLIRCRDLNAAMELMDEMEEK-RIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVML 393 (500)
Q Consensus 317 --~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 393 (500)
+..+|.-...+.+.|+.+.|.+.+.+|.-+ ....|++|...+.-.= -.+++.+..+-+.-+...+. -...||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHH
Confidence 012344444455555555555555555432 2223444443332111 12223333333332332221 224455555
Q ss_pred HHHHHHcCCHhhHHHHHH
Q 041822 394 MKFFCVNFRVDLGLNLWG 411 (500)
Q Consensus 394 l~~~~~~~~~~~a~~~~~ 411 (500)
+-.||+..-++.|-.++.
T Consensus 317 LllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHhhhHHHhHHHHHHh
Confidence 555555555555554443
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.96 E-value=1.2e-05 Score=85.90 Aligned_cols=336 Identities=9% Similarity=-0.010 Sum_probs=210.8
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC-------CC--HHhHHHH
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFA-------PN--NKTMNIL 218 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-------~~--~~~~~~l 218 (500)
.....|+++.+...++.+..... ..+..........+...|++++|...+....+... +. ......+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~----~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 458 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVL----LENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALR 458 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHH----hcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHH
Confidence 34456777777777776643321 12233334455566778999999999988764211 11 1222333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHHHHHHHH
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGFRPSV----VTYNIRIDGYCKKGCFGDAMRLFEEMERV----AC-LPSLQTITTLI 289 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll 289 (500)
...+...|+++.|...+++..+.-...+. ...+.+...+...|++++|...+++.... |- .....++..+.
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 45566789999999999987763111121 23455666777899999999999887642 21 11123445566
Q ss_pred HHHHccCCHHHHHHHHHhchhC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHH
Q 041822 290 HGAGLVRNIHQARQLFDEMPKR----NLK--P-DIGAYNAMISSLIRCRDLNAAMELMDEMEEK--RIGH--DNVTYHTM 358 (500)
Q Consensus 290 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~--~~~~~~~l 358 (500)
..+...|+++.|...+++..+. +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 6788899999999988876542 211 1 2234455666777889999999998876543 1111 23344445
Q ss_pred HHHHHHcCChhHHHHHHHHHHhC--CCCCCHH--H-H-HHHHHHHHHcCCHhhHHHHHHHHHHCCCCCC---HhHHHHHH
Q 041822 359 FFGLMKSSGLEGVCKLYDRMIEG--KFVPKTR--T-V-VMLMKFFCVNFRVDLGLNLWGYLIDRGFCPH---GHALDLLV 429 (500)
Q Consensus 359 i~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~--~-~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li 429 (500)
...+...|++++|.+.+.+.... ....... . . ...+..+...|+.+.|...+........... ...+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 66778899999999998887532 1111111 1 1 1122334557899999888776554221111 11134567
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCchhHHHHHHHHHHHhh
Q 041822 430 TGLCSRGRWEEAFECSKQMLVR----RRQVS-EASYRMLQRYLVQANANEKLEDLDRMIKNLQ 487 (500)
Q Consensus 430 ~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 487 (500)
.++...|++++|...+++.... |..++ ..+...+..++...|+.++|...+...-...
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7888999999999999988653 33322 2345666788889999999888877665554
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.96 E-value=3.2e-06 Score=73.78 Aligned_cols=301 Identities=10% Similarity=0.038 Sum_probs=214.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHh
Q 041822 71 NVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRIS 150 (500)
Q Consensus 71 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (500)
--|...+...|++..|+.-|+.+..- -|.+-.++-.....|...|+-..|+.=++.+.+..|+-.- +-..-...+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~--ARiQRg~vll 117 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMA--ARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHH--HHHHhchhhh
Confidence 34567778889999999999999874 2444556667778888999999999999999987765322 2223334578
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhh------------HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEE------------FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNIL 218 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~------------~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l 218 (500)
+.|.+++|..-|+.+....... ...... ....+..+...|+...|+.....+++-.+-|...|..-
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~--~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSN--GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCc--chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 9999999999999988763210 011111 23345567778999999999999998778899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH----------
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTL---------- 288 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l---------- 288 (500)
..+|...|++..|..=+....+.. ..+...+--+-..+...|+.+.++...++..+.+ ||...+-..
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHH
Confidence 999999999999887666655543 3356666667778888999999999999998865 664432211
Q ss_pred ---HHHHHccCCHHHHHHHHHhchhCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 289 ---IHGAGLVRNIHQARQLFDEMPKRNLKPD---IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGL 362 (500)
Q Consensus 289 ---l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 362 (500)
+......+++.++....+...+....-. ...+..+-.++...|++.+|+....++.+.... |+.++.--..+|
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHH
Confidence 1223445666677776666666532211 223455666777778888888888887765322 466666667788
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 041822 363 MKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~ 381 (500)
.-..+++.|+.-|+...+.
T Consensus 352 l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hhhHHHHHHHHHHHHHHhc
Confidence 8888888888888887764
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.88 E-value=1.9e-06 Score=82.39 Aligned_cols=324 Identities=15% Similarity=0.130 Sum_probs=169.5
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
.+++|.+.|.|.+|.+....-. ....|......+..++.+..-+++|-.+|+.+.. +...+.+|-+-
T Consensus 621 aiqlyika~~p~~a~~~a~n~~---~l~~de~il~~ia~alik~elydkagdlfeki~d----------~dkale~fkkg 687 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDE---ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----------FDKALECFKKG 687 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHH---HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----------HHHHHHHHHcc
Confidence 4567778888877776543221 2345667777777777777777777777776643 11223333333
Q ss_pred ccHHHHHHHHHHHHHHHhc------c-----ccCCCh--------hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHH
Q 041822 153 QSYEETLEAFDRMEREIFV------G-----IRKFGS--------EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNK 213 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~------~-----~~~~~~--------~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 213 (500)
.-+.+|.++-+-.-....+ | ....|. ......+.+......|.+|+.+++.+... +.-..
T Consensus 688 daf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdq-k~~s~ 766 (1636)
T KOG3616|consen 688 DAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQ-KTASG 766 (1636)
T ss_pred cHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhh-ccccc
Confidence 3333333322211000000 0 000000 01112233445556677777777666542 12233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041822 214 TMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAG 293 (500)
Q Consensus 214 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 293 (500)
-|..+...|+..|+++.|+++|.+. ..++-.|.+|.+.|+|++|.++-++... -......|-+-..-+-
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedld 835 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLD 835 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHH
Confidence 4566667777777777777766432 2345566777777777777777655433 2234444555555566
Q ss_pred ccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 041822 294 LVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCK 373 (500)
Q Consensus 294 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 373 (500)
+.|++.+|.++|-.+.. |+ ..|.+|-+.|..++.+++.++-... .-..|...+..-|-..|+...|..
T Consensus 836 ehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 836 EHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred hhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHH
Confidence 66777777766644322 22 3466777777777777666543321 112334445556666777777776
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041822 374 LYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448 (500)
Q Consensus 374 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (500)
-|-+.-+ |.+-+..|-.++.++.|.++-. ..| ..|..-.-..+ ++++=--+.|.+++++.
T Consensus 904 ~flea~d---------~kaavnmyk~s~lw~dayriak---teg-g~n~~k~v~fl--waksiggdaavkllnk~ 963 (1636)
T KOG3616|consen 904 HFLEAGD---------FKAAVNMYKASELWEDAYRIAK---TEG-GANAEKHVAFL--WAKSIGGDAAVKLLNKH 963 (1636)
T ss_pred HHHhhhh---------HHHHHHHhhhhhhHHHHHHHHh---ccc-cccHHHHHHHH--HHHhhCcHHHHHHHHhh
Confidence 6644321 3444555666666666555432 222 12322222223 34443346677777763
No 94
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=2.4e-06 Score=87.41 Aligned_cols=233 Identities=12% Similarity=-0.015 Sum_probs=163.6
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN-----NKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVV 248 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 248 (500)
.|-+...|-..|....+.++.++|.+++++.+..+.+. ...|.++++.-...|.-+...++|+++.+.. -.-.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 35566778888888888888888888888888644322 2457777777667777788888888887762 2345
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCC-CCHhhHHHHHHHH
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLK-PDIGAYNAMISSL 327 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 327 (500)
.|..|...|.+.+++++|.++|+.|.+.= .-....|...+..+.+.++-+.|..++.+..+.-.+ -........+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 67778888888888888888888887642 245667888888888888888888888877765211 1233455556666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHhh
Q 041822 328 IRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK--TRTVVMLMKFFCVNFRVDL 405 (500)
Q Consensus 328 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~ 405 (500)
.+.|+.+.+..+|+......++ -...|+..++.-.++|+.+.+.++|++.+..++.|. ...|...+..=...|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 7788888888888877766433 556788888888888888888888888888777665 3344444444444455444
Q ss_pred HHHHH
Q 041822 406 GLNLW 410 (500)
Q Consensus 406 a~~~~ 410 (500)
++.+=
T Consensus 1690 vE~VK 1694 (1710)
T KOG1070|consen 1690 VEYVK 1694 (1710)
T ss_pred HHHHH
Confidence 44433
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=2.3e-07 Score=83.07 Aligned_cols=251 Identities=8% Similarity=0.004 Sum_probs=143.6
Q ss_pred HHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 041822 185 LQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 263 (500)
++-+.-.|++..++.-.+ ... .-..+......+.+++...|+.+.+. .++.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344555677777775555 222 11223445566677777778766543 3333332 55655555554444333445
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 264 GDAMRLFEEMERVACLP-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDE 342 (500)
Q Consensus 264 ~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 342 (500)
+.++.-+++....+..+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555554443333222 2222223334456678888887776543 2456666777888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHH--c--CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCC
Q 041822 343 MEEKRIGHDNVTYHTMFFGLMK--S--SGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418 (500)
Q Consensus 343 ~~~~~~~~~~~~~~~li~~~~~--~--g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 418 (500)
|.+.+ +..+...+..++.. . +.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 87653 23344445554432 2 3577888888887653 45677777777777788888888888887776544
Q ss_pred CCCHhHHHHHHHHHhcCCCH-HHHHHHHHHHHHc
Q 041822 419 CPHGHALDLLVTGLCSRGRW-EEAFECSKQMLVR 451 (500)
Q Consensus 419 ~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 451 (500)
+-+..+...++.+....|+. +.+.+.+.++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 22455555666666667776 5566777777643
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=8.2e-05 Score=69.98 Aligned_cols=363 Identities=11% Similarity=0.135 Sum_probs=208.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLL 185 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll 185 (500)
+-+=++.+...|++++|.+....+....|+ +..++.+-+-+..+.+++++|+.+.+.-.... ..+. -+..-.
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-----~~~~-~~fEKA 86 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGALL-----VINS-FFFEKA 86 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-----hcch-hhHHHH
Confidence 334566678889999999999999988765 44566677777889999999996655432211 0011 111223
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--------------------
Q 041822 186 QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRP-------------------- 245 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-------------------- 245 (500)
.+..+.+..++|...++..- +.|..+...-...+.+.|++++|..+|..+.+.+..-
T Consensus 87 Yc~Yrlnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~ 163 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQL 163 (652)
T ss_pred HHHHHcccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHH
Confidence 34457899999999988332 2344567777788999999999999999997764320
Q ss_pred -------CHHHHHHH---HHHHHhcCChhHHHHHHHHHHHcC-------CCCCHH-------HHHHHHHHHHccCCHHHH
Q 041822 246 -------SVVTYNIR---IDGYCKKGCFGDAMRLFEEMERVA-------CLPSLQ-------TITTLIHGAGLVRNIHQA 301 (500)
Q Consensus 246 -------~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~-------~~~~ll~~~~~~~~~~~a 301 (500)
...+|..+ ...+...|++.+|+++++...+.+ -.-+.. .-..+.-.+-..|+..+|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 01123322 234456788888888888773211 111111 122234456677888888
Q ss_pred HHHHHhchhCCCCCCHhh----HHHHHHHHHhc---------------------------------------------CC
Q 041822 302 RQLFDEMPKRNLKPDIGA----YNAMISSLIRC---------------------------------------------RD 332 (500)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~----~~~li~~~~~~---------------------------------------------g~ 332 (500)
..++....+.+. +|... -|.|+..-... +.
T Consensus 244 ~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 244 SSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888877653 23211 11111110000 00
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHhhHHH
Q 041822 333 LNAAMELMDEMEEKRIGHDNVTYHTMFFGLM--KSSGLEGVCKLYDRMIEGKFVPKT--RTVVMLMKFFCVNFRVDLGLN 408 (500)
Q Consensus 333 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~ 408 (500)
.+.+.++..... +..|. ..+.+++..+. +.....++.+++...-+. .|.. ......+......|+++.|.+
T Consensus 323 ~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 323 MDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 011111100000 11122 22333333222 222355566666555443 3433 334445556677899999999
Q ss_pred HHH--------HHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCCCHHH----HHHHHHHHHHcCchh
Q 041822 409 LWG--------YLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR--RRQVSEAS----YRMLQRYLVQANANE 474 (500)
Q Consensus 409 ~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~----~~~l~~~~~~~~~~~ 474 (500)
++. .+.+.+..| .+...+...+.+.++.+.|..++++.... .-.+.... +..+...-.+.|..+
T Consensus 398 il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 988 444444444 45556777788888877777777776541 11222222 333334445678888
Q ss_pred HHHHHHHHHHHhh
Q 041822 475 KLEDLDRMIKNLQ 487 (500)
Q Consensus 475 ~~~~~~~~~~~~~ 487 (500)
++..+++.+.+..
T Consensus 476 ea~s~leel~k~n 488 (652)
T KOG2376|consen 476 EASSLLEELVKFN 488 (652)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888887753
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=2.6e-07 Score=82.73 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
.....+..|.+.++++.|.+.++.|.+
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333334444444444444444444443
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=4e-05 Score=76.27 Aligned_cols=302 Identities=11% Similarity=0.151 Sum_probs=207.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHH
Q 041822 70 ENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRI 149 (500)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 149 (500)
.++|+-... .-++.+..+..+++..-+ .| .+...+...+-+++|..+|+.... +..+...++.
T Consensus 1024 QnLLiLtAi-kad~trVm~YI~rLdnyD--a~------~ia~iai~~~LyEEAF~ifkkf~~------n~~A~~VLie-- 1086 (1666)
T KOG0985|consen 1024 QNLLILTAI-KADRTRVMEYINRLDNYD--AP------DIAEIAIENQLYEEAFAIFKKFDM------NVSAIQVLIE-- 1086 (1666)
T ss_pred hhhHHHHHh-hcChHHHHHHHHHhccCC--ch------hHHHHHhhhhHHHHHHHHHHHhcc------cHHHHHHHHH--
Confidence 344443333 345666777777665432 12 355666778889999999987532 3445555554
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHH
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVT 229 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (500)
.-+..++|.+.-++.. .+.+|..+..+-.+.|.+.+|.+-|-+.- |+..|..++..+.+.|.|+
T Consensus 1087 -~i~~ldRA~efAe~~n----------~p~vWsqlakAQL~~~~v~dAieSyikad-----Dps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1087 -NIGSLDRAYEFAERCN----------EPAVWSQLAKAQLQGGLVKDAIESYIKAD-----DPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred -HhhhHHHHHHHHHhhC----------ChHHHHHHHHHHHhcCchHHHHHHHHhcC-----CcHHHHHHHHHHHhcCcHH
Confidence 4577788877766553 45689999999999999999998877653 7888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhch
Q 041822 230 AMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMP 309 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 309 (500)
+..+++.-..+..-+|... ..||-+|++.++..+..+++. | ||......+.+-|...+.++.|.-+|..
T Consensus 1151 dLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-----g--pN~A~i~~vGdrcf~~~~y~aAkl~y~~-- 1219 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-----G--PNVANIQQVGDRCFEEKMYEAAKLLYSN-- 1219 (1666)
T ss_pred HHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-----C--CCchhHHHHhHHHhhhhhhHHHHHHHHH--
Confidence 9999987766665555544 578999999999888666542 3 8888888888889999999998877763
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 041822 310 KRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRT 389 (500)
Q Consensus 310 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 389 (500)
+.-|..|...+...|++..|.+.-++.. +..+|..+-.+|...+.+.-| +|...++.....-
T Consensus 1220 -------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhade 1281 (1666)
T KOG0985|consen 1220 -------VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADE 1281 (1666)
T ss_pred -------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHh
Confidence 4457777788888888887776544332 667787777777766554433 3333333444555
Q ss_pred HHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 041822 390 VVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS 434 (500)
Q Consensus 390 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 434 (500)
...++..|...|-+++...+++..+... +.....|+.|.-.|.+
T Consensus 1282 Leeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHh
Confidence 6667777777777777776666554321 1233445555555554
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.87 E-value=1.9e-05 Score=69.06 Aligned_cols=318 Identities=8% Similarity=0.002 Sum_probs=192.3
Q ss_pred CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChh-
Q 041822 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE- 179 (500)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~- 179 (500)
.+..-...+...+...|++..|+.-|....+..|+ ++.++..-...|...|+-.-|+.-|.++.+. +||-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlel------KpDF~~ 107 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLEL------KPDFMA 107 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhc------CccHHH
Confidence 34455567778888899999999999988876554 4455555566788889888888888887764 34422
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
+--.-...+.+.|.++.|..-|+..++..+.+.. ...+..+.-..++-+ .....+..+..
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~----~~eaqskl~~~~e~~----------------~l~~ql~s~~~ 167 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGL----VLEAQSKLALIQEHW----------------VLVQQLKSASG 167 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcch----hHHHHHHHHhHHHHH----------------HHHHHHHHHhc
Confidence 2222345678899999999999998863221111 111111111111111 11122333444
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 041822 260 KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMEL 339 (500)
Q Consensus 260 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 339 (500)
.|+...|++....+.+-. +-|...|..-..+|...|++..|+.=++...+.. .-+..++-.+-..+...|+.+.++..
T Consensus 168 ~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 566777777766666643 3455556666666777777777666555554432 22444555555566666777777666
Q ss_pred HHHHHHCCCCCCHH----HHHHH---------HHHHHHcCChhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCH
Q 041822 340 MDEMEEKRIGHDNV----TYHTM---------FFGLMKSSGLEGVCKLYDRMIEGKFVPKTRT---VVMLMKFFCVNFRV 403 (500)
Q Consensus 340 ~~~~~~~~~~~~~~----~~~~l---------i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~~~ 403 (500)
.++..+.+ ||.. .|..+ +......++|.++++-.+...+......... +..+..++...|++
T Consensus 246 iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 246 IRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 66666542 2321 11111 1223455677777777777665432212222 33445555667888
Q ss_pred hhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 404 DLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 404 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
.+|++...+.++.. +.|+.++.--..+|.-...+++|+.=|+...+.
T Consensus 324 ~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 324 GEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 88888888888743 234777777778888888888888888887654
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.80 E-value=1.3e-05 Score=79.64 Aligned_cols=397 Identities=9% Similarity=-0.053 Sum_probs=207.6
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
-...|..|...|+...+-.+|.+.|+.+...+ ..+........+.+++..+++.|..+.-...+..|.......|...
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQR 568 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhc
Confidence 34556667777777777777888888777654 4456667777788888888888877754444433322222233334
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
.-.|...++...|..-|+...+. .|.|...|..++.+|.++|+...|.++|++...-.|.+...-.-....-+..
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~-----dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRT-----DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcC-----CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 44566777777777777776655 4677888888888888888888888888777652222333323333344566
Q ss_pred CCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-------HHcCCCCCHHHHHHHHHHH
Q 041822 226 GDVTAMEMFYHEMVLR------GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM-------ERVACLPSLQTITTLIHGA 292 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-------~~~~~~~~~~~~~~ll~~~ 292 (500)
|.+.++...+...... |..--..++-.+...+...|-..+|...++.- .......+...|-.+-++|
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC 723 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence 7777777776665432 11112223333333333333333333333322 2111111222222222211
Q ss_pred H-----------------------ccCCH---H---HHHHHHHhchhCCCCCCHhhHHHHHHHHHh----cC----CHHH
Q 041822 293 G-----------------------LVRNI---H---QARQLFDEMPKRNLKPDIGAYNAMISSLIR----CR----DLNA 335 (500)
Q Consensus 293 ~-----------------------~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g----~~~~ 335 (500)
. ..+.. | -+.+.+-.-.+ ...+..+|..++..|.+ +| +...
T Consensus 724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 1 11110 0 01111100000 01122334444433333 11 2235
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHH
Q 041822 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLID 415 (500)
Q Consensus 336 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 415 (500)
|...+....+..- .+..+||.|--. ...|++.-+..-|-+-+... +....+|..+--.|....+++.|...|.....
T Consensus 802 Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 5555655544322 255666665443 45566666666555444321 22355666666667777888888888888777
Q ss_pred CCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHcCchhH
Q 041822 416 RGFCPHGHALDLLVTGLCSRGRWEEAFECSKQML----VRRRQVSEASYRMLQRYLVQANANEK 475 (500)
Q Consensus 416 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~l~~~~~~~~~~~~ 475 (500)
.. +.|...|-.........|+.-++..+|..-- ..|-.++...|-....-....|+.+.
T Consensus 879 Ld-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 879 LD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred cC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 43 2244455444444455677777777776621 12334454444444444445555443
No 101
>PLN02789 farnesyltranstransferase
Probab=98.80 E-value=1.4e-05 Score=72.71 Aligned_cols=147 Identities=10% Similarity=0.061 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCC-ChHHHHHHHHHhHhhCCCCccHHHHHHHHH
Q 041822 69 VENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMR-YFDQAWELMSHVQRTHPSLLTLKSMSIMLS 147 (500)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (500)
++..+..++...+..++|+.+...+++.. |-+..+|+....++...| ++++++..++.+.+..|. +..+|.....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk--nyqaW~~R~~ 114 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK--NYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc--chHHhHHHHH
Confidence 34444455555666777777777766642 233334555555555555 456677776666666544 3334443333
Q ss_pred HHhccccH--HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh
Q 041822 148 RISKFQSY--EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 148 ~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~ 224 (500)
.+.+.|.. ++++..++++.+. .+.+..+|+...-++...|+++++++.++++++..+-|...|+.....+.+
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~-----dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSL-----DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 33344432 4555555555554 355566666666666666666666666666665444555555555544433
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.80 E-value=1.4e-06 Score=76.84 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=34.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVA--CLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
+...|.+.|++++|+..+++..+.. -+.....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4445666666777666666665542 1112345666666666667777666666665543
No 103
>PLN02789 farnesyltranstransferase
Probab=98.78 E-value=1e-05 Score=73.63 Aligned_cols=236 Identities=12% Similarity=0.052 Sum_probs=176.3
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccc-cHHHHH
Q 041822 81 SNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQ-SYEETL 159 (500)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~ 159 (500)
+++.+|...|+.+.. ..++.++|+.+.+.+.+..|... .+|..-...+...| .+++++
T Consensus 34 ~~~~~a~~~~ra~l~-------------------~~e~serAL~lt~~aI~lnP~~y--taW~~R~~iL~~L~~~l~eeL 92 (320)
T PLN02789 34 PEFREAMDYFRAVYA-------------------SDERSPRALDLTADVIRLNPGNY--TVWHFRRLCLEALDADLEEEL 92 (320)
T ss_pred HHHHHHHHHHHHHHH-------------------cCCCCHHHHHHHHHHHHHCchhH--HHHHHHHHHHHHcchhHHHHH
Confidence 456667766666554 34577889999999998877644 45555555555666 689999
Q ss_pred HHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCH--HHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 160 EAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEM--KEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHE 237 (500)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 237 (500)
..++++... .+.+..+|+.....+.+.|+. +++..+++.+.+..+-|..+|+....++...|+++++.+.+++
T Consensus 93 ~~~~~~i~~-----npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~ 167 (320)
T PLN02789 93 DFAEDVAED-----NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQ 167 (320)
T ss_pred HHHHHHHHH-----CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999887 467778898777777777763 6789999999987778999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc---CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHH
Q 041822 238 MVLRGFRPSVVTYNIRIDGYCKK---GCF----GDAMRLFEEMERVACLPSLQTITTLIHGAGLV----RNIHQARQLFD 306 (500)
Q Consensus 238 ~~~~g~~~~~~~~~~li~~~~~~---g~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~ 306 (500)
+++.+.. |...|+.....+.+. |.. ++.++...++.... +-|...|+-+...+... ++..+|.+.+.
T Consensus 168 ~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 168 LLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred HHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 9988644 667777666555544 323 46777777777654 45677788877777763 44567888888
Q ss_pred hchhCCCCCCHhhHHHHHHHHHhcC------------------CHHHHHHHHHHHHH
Q 041822 307 EMPKRNLKPDIGAYNAMISSLIRCR------------------DLNAAMELMDEMEE 345 (500)
Q Consensus 307 ~~~~~~~~~~~~~~~~li~~~~~~g------------------~~~~a~~~~~~~~~ 345 (500)
+..+.+ ..+......|++.|+... ..++|.++++.+.+
T Consensus 246 ~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 246 EVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV 301 (320)
T ss_pred Hhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence 877754 336778888999998642 34789999998853
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.78 E-value=9.4e-09 Score=58.52 Aligned_cols=32 Identities=59% Similarity=1.073 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 242 GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 242 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
|+.||..+|+.||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=6.2e-06 Score=84.49 Aligned_cols=221 Identities=14% Similarity=0.080 Sum_probs=141.7
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhC---CCCccHHHHHHHHHHHhccccHHHHH
Q 041822 83 GLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTH---PSLLTLKSMSIMLSRISKFQSYEETL 159 (500)
Q Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~ 159 (500)
++.|-++-...+.. |.+...|...+......++.++|+++++++...- ........|.++++.-...|.-+...
T Consensus 1441 pesaeDferlvrss---PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSS---PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred CcCHHHHHHHHhcC---CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 33444444444332 4455567777777778888888888888877641 11123346666666666667777777
Q ss_pred HHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 160 EAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239 (500)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (500)
++|++..+.. ..-.+|..|...|.+.+..++|.++++.|.+++......|...+..+.+.++-++|..++.+..
T Consensus 1518 kVFeRAcqyc------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1518 KVFERACQYC------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHhc------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7777776542 1234577777777777888888888888877666677777777777777777777777777766
Q ss_pred HCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCC
Q 041822 240 LRGFRPS---VVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKP 315 (500)
Q Consensus 240 ~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 315 (500)
+. -|. .......+..-.+.|+.+.+..+|+...... +--...|+..++.-.+.|+.+.+..+|++....++.|
T Consensus 1592 ~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1592 KS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 65 222 2223334444456677777777777666543 2345566777777777777777777777776665543
No 106
>PF12854 PPR_1: PPR repeat
Probab=98.76 E-value=1.1e-08 Score=58.19 Aligned_cols=32 Identities=38% Similarity=0.645 Sum_probs=24.9
Q ss_pred CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041822 417 GFCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448 (500)
Q Consensus 417 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (500)
|+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 67777777777777777777777777777776
No 107
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5.2e-05 Score=70.47 Aligned_cols=363 Identities=13% Similarity=0.060 Sum_probs=232.3
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHH
Q 041822 110 LHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFC 189 (500)
Q Consensus 110 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 189 (500)
..+....|+++.|...|.+.....|. +...|..-..+|+..|++++|++--.+-.+. .|.-...|+....++.
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~l-----~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYASLGSYEKALKDATKTRRL-----NPDWAKGYSRKGAALF 81 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHhc-----CCchhhHHHHhHHHHH
Confidence 34566889999999999999988665 4456777778899999999998876666555 4556778999999999
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHH---HHHHHHHHHHHCC---CCCCHHHHHHHHHHH------
Q 041822 190 TQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVT---AMEMFYHEMVLRG---FRPSVVTYNIRIDGY------ 257 (500)
Q Consensus 190 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~g---~~~~~~~~~~li~~~------ 257 (500)
-.|++++|+.-|.+-++..+.|...++-+..++....... .--.++..+.... .......|..++..+
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 9999999999999999877888888888888772110000 0000111111000 000111222222221
Q ss_pred ----HhcCChhHHHHHHHH-----HHHcC-------CCC----------------------CHHHHHHHHHHHHccCCHH
Q 041822 258 ----CKKGCFGDAMRLFEE-----MERVA-------CLP----------------------SLQTITTLIHGAGLVRNIH 299 (500)
Q Consensus 258 ----~~~g~~~~a~~~~~~-----m~~~~-------~~~----------------------~~~~~~~ll~~~~~~~~~~ 299 (500)
.+-.++..|...+.. +...| ..| -..-...+.++..+..+++
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 111111111111110 00000 111 1123556778888889999
Q ss_pred HHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-------HHHHHcCChhHHH
Q 041822 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF-------FGLMKSSGLEGVC 372 (500)
Q Consensus 300 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-------~~~~~~g~~~~a~ 372 (500)
.+++-+....+.. -+..-++....+|...|...++...-....+.|-. ...-|+.+. .+|.+.++++.++
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 9999999988875 46666788888899999998888887777666543 333344333 3566677889999
Q ss_pred HHHHHHHhCCCCCCHHHH-------------------------HHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHH
Q 041822 373 KLYDRMIEGKFVPKTRTV-------------------------VMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDL 427 (500)
Q Consensus 373 ~~~~~~~~~~~~p~~~~~-------------------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 427 (500)
..|.+.......|+...= ..-...+.+.|++..|...+.++++.. +-|...|..
T Consensus 319 ~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsN 397 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSN 397 (539)
T ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHH
Confidence 998887654444442210 111334667799999999999999876 457788999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCchhHHHHHHHHHHH
Q 041822 428 LVTGLCSRGRWEEAFECSKQMLVRRRQVSEA-SYRMLQRYLVQANANEKLEDLDRMIKN 485 (500)
Q Consensus 428 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 485 (500)
-.-+|.+.|.+..|++=.+...+. .|+.. .|..=..++....+++.+.+.+++-.+
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998877777654 33322 232223444445566666655555443
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=2.5e-06 Score=79.66 Aligned_cols=219 Identities=13% Similarity=0.089 Sum_probs=97.7
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHH
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVT 229 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (500)
.+.|+..+|.-.|+...+. .|.+..+|..|.......++-..|+..+.+.++-.+.|....-.|.-.|...|.-.
T Consensus 296 m~nG~L~~A~LafEAAVkq-----dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQ-----DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HhcCCchHHHHHHHHHHhh-----ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 3445555555555554444 24445555555555555555555555555555433444455555555555555444
Q ss_pred HHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccCCHHH
Q 041822 230 AMEMFYHEMVLRGFR--------PSVVTYNIRIDGYCKKGCFGDAMRLFEEME-RVACLPSLQTITTLIHGAGLVRNIHQ 300 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~~~~~ 300 (500)
.|.+.++.-+....+ ++...-+. ..+.....+.+..++|-++. ..+..+|......|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 444444444322100 00000000 01111122223333333332 22323444444444444555555555
Q ss_pred HHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 041822 301 ARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDR 377 (500)
Q Consensus 301 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (500)
|.+.|+..+... +-|...||.|...++...+.++|+..|.+..+..+.--.+-|| |.-.|...|.+++|.+.|-.
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN-LGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh-hhhhhhhhhhHHHHHHHHHH
Confidence 555555555542 2244455555555555555555555555555542221112233 33445555555555555443
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=2.2e-06 Score=80.03 Aligned_cols=222 Identities=11% Similarity=0.037 Sum_probs=119.4
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 041822 187 AFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDA 266 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a 266 (500)
.+.+.|++.+|.-.|+..++..|.+...|..|.......++-..|...+.+..+.. +-|......|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 34566667777777777766666677777777777777776666776666666653 22455566666667777777777
Q ss_pred HHHHHHHHHcCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHhch-hCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041822 267 MRLFEEMERVACL--------PSLQTITTLIHGAGLVRNIHQARQLFDEMP-KRNLKPDIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 267 ~~~~~~m~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~ 337 (500)
++.++.-.....+ ++...-.. ..+..........++|-++. +.+..+|..+...|.-.|--.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 7777666443200 00000000 01111111223333333332 2232345555555555555666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHH
Q 041822 338 ELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLI 414 (500)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 414 (500)
+.|+......+. |..+||-|...++...+.++|+..|.+..+. .|. ......|.-+|...|.+++|...|-..+
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 666665554433 5556666666666666666666666665543 444 2222334445556666666665554444
No 110
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.73 E-value=0.00038 Score=68.87 Aligned_cols=191 Identities=12% Similarity=0.083 Sum_probs=122.7
Q ss_pred HhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHH
Q 041822 77 FAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYE 156 (500)
Q Consensus 77 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (500)
..+.|..++|..+++...... ..|..|+..+-..|.+.|+.++|..++++..+..|. ......++.+|++.+++.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~---eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS---EELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc---HHHHHHHHHHHHHHHHHH
Confidence 356788888887777766543 237778888888888888888888888888887665 456677777888887776
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCC----------HHHHHHHHHHhhh--CCCCCHHhHHHHHHHHHh
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKE----------MKEARSVFVKLLS--RFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~A~~~~~~m~~--~~~~~~~~~~~l~~~~~~ 224 (500)
+-.++--++-+. .|.+...+=++++.+.+... ..-|.+.++.+.+ |-..+..=...-......
T Consensus 128 ~qQkaa~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~ 202 (932)
T KOG2053|consen 128 KQQKAALQLYKN-----FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILEL 202 (932)
T ss_pred HHHHHHHHHHHh-----CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHh
Confidence 655544444433 34455555555555544321 2345666666664 211122222222334456
Q ss_pred cCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 225 SGDVTAMEMFYH-EMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 225 ~~~~~~a~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
.|++++|..++. ...+.-..-+...-+.-++.+...++|.+..++-.++...|
T Consensus 203 ~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 203 QGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred cccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 778888888873 34443333344555566777888899999998888888877
No 111
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.72 E-value=2.3e-05 Score=75.32 Aligned_cols=170 Identities=12% Similarity=0.071 Sum_probs=102.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCC
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRD 332 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 332 (500)
.+.+......|.+|+.+++.+++.. .-..-|..+.+-|+..|+++.|.++|.+.- .++-.|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3455566788888888888887764 334457777788888888988888886532 35667888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHH
Q 041822 333 LNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGY 412 (500)
Q Consensus 333 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 412 (500)
+++|.++-++.. |.......|-+-..-+-.+|++.+|.++|-.+- .|+. .|..|-+.|..+...++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 988888765543 334455556555566667777777777664332 3332 24455555655555555443
Q ss_pred HHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 041822 413 LIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQ 447 (500)
Q Consensus 413 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 447 (500)
-...- -..+...+..-|...|+...|..-|-+
T Consensus 876 ~h~d~---l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 876 HHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hChhh---hhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 22110 012233344444455555555544433
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.69 E-value=0.0003 Score=65.65 Aligned_cols=413 Identities=12% Similarity=0.122 Sum_probs=227.1
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.+-..|..|++-+..+ ..+++.+.++.+... +|-++..|..-+....+..+++....+|.+.... ..+...|..
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk---vLnlDLW~l 91 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK---VLNLDLWKL 91 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HhhHhHHHH
Confidence 3455677888876655 889999999999874 6788899999999999999999999999998874 334445555
Q ss_pred HHHHHhcc-ccH----HHHHHHHHHHHHHHhccccCCChhhHHHHHHH---------HHcCCCHHHHHHHHHHhhhCCC-
Q 041822 145 MLSRISKF-QSY----EETLEAFDRMEREIFVGIRKFGSEEFNVLLQA---------FCTQKEMKEARSVFVKLLSRFA- 209 (500)
Q Consensus 145 l~~~~~~~-g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~---------~~~~~~~~~A~~~~~~m~~~~~- 209 (500)
.+..-.+. |+. +...+.|+-..... |....+...|+..+.. +..+.+.+...++|++++..--
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~ki--g~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKI--GMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHh--ccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 55422221 222 22334444433332 1133344456655544 3344466677778888764100
Q ss_pred ------CCHHhHHHHHHHHH-------hcCCHHHHHHHHHHHHHC--CCCCCHHH---------------HHHHHHHHHh
Q 041822 210 ------PNNKTMNILLLGFK-------ESGDVTAMEMFYHEMVLR--GFRPSVVT---------------YNIRIDGYCK 259 (500)
Q Consensus 210 ------~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~--g~~~~~~~---------------~~~li~~~~~ 259 (500)
-|-..|..=|+... +...+..|+++++++... |+..+..+ |..+|.-=-.
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEks 249 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKS 249 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 11122222222111 223455677777776543 44322222 4334432211
Q ss_pred cCCh--------hHHHHHHHHH-HHcCCCCCHHHHH-HHH----HHHHccCC-------HHHHHHHHHhchhCCCCCCHh
Q 041822 260 KGCF--------GDAMRLFEEM-ERVACLPSLQTIT-TLI----HGAGLVRN-------IHQARQLFDEMPKRNLKPDIG 318 (500)
Q Consensus 260 ~g~~--------~~a~~~~~~m-~~~~~~~~~~~~~-~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~ 318 (500)
++-- ....-.+++. .-.+..|+..... ..+ +.+...|+ -+++..+++...+.-..-+..
T Consensus 250 NpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~ 329 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL 329 (656)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 0111122221 1223333322111 111 11222232 344445555444332222333
Q ss_pred hHHHHHHHHHhc---CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHH
Q 041822 319 AYNAMISSLIRC---RDLNAAMELMDEMEEK-RIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP-KTRTVVML 393 (500)
Q Consensus 319 ~~~~li~~~~~~---g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l 393 (500)
+|..+.+---.. ...+...+++++.... ...| ..+|...+....+....+.|..+|.+..+.+..+ +...+.++
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 333332211111 1244455555555443 2222 3456667777777777888888888888776666 45556666
Q ss_pred HHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcC
Q 041822 394 MKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS--EASYRMLQRYLVQAN 471 (500)
Q Consensus 394 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~ 471 (500)
+.-+| .++.+-|.++|+--++. +.-+.......++-+...++-..|..+|++....++.|+ ...|..++..=..-|
T Consensus 409 mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 409 MEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 66554 46677788888776653 123334445666677777777788888888877755554 356788888778888
Q ss_pred chhHHHHHHHHHHHhhc
Q 041822 472 ANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 472 ~~~~~~~~~~~~~~~~~ 488 (500)
+.+.+.++.+.+.....
T Consensus 487 dL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTAFP 503 (656)
T ss_pred cHHHHHHHHHHHHHhcc
Confidence 88888887776665544
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.66 E-value=4.5e-06 Score=73.60 Aligned_cols=184 Identities=9% Similarity=0.048 Sum_probs=120.3
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCCh---hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHH-
Q 041822 138 TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS---EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNK- 213 (500)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~- 213 (500)
....+......+...|++++|...|+++.... |.+. .++..+..++.+.|++++|...++++.+..+.+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 44456666667777888888888888776652 2222 46677778888888888888888888764333332
Q ss_pred --hHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 041822 214 --TMNILLLGFKES--------GDVTAMEMFYHEMVLRGFRPSV-VTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL 282 (500)
Q Consensus 214 --~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 282 (500)
++..+..++.+. |+.+.|.+.++.+.+. .|+. ..+..+..... .... ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~~-------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------LA-------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------HH--------
Confidence 455555555543 6677888888887766 3332 22222211100 0000 00
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhchhCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 283 QTITTLIHGAGLVRNIHQARQLFDEMPKRNL--KPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 283 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
.....+...+.+.|++++|...+....+... +.....+..+..++...|+.++|..+++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112455668899999999999999887632 223578889999999999999999999888765
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=9.8e-05 Score=72.07 Aligned_cols=244 Identities=11% Similarity=0.070 Sum_probs=146.0
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh-----------CCCCccHHHHHHHHH
Q 041822 79 AHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT-----------HPSLLTLKSMSIMLS 147 (500)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~l~~ 147 (500)
..|+-+.|.+..+.+. +...|..+.++|.+.++++-|.-.+-.|... +++... ....-
T Consensus 740 tiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~e----akvAv 808 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDE----AKVAV 808 (1416)
T ss_pred EeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchh----hHHHH
Confidence 4466666665554432 4567788888888887777776666555431 122111 11122
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD 227 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~ 227 (500)
.-...|..++|+.+|++-++.+ .|=+.|...|.|++|.++-+.--+ +. =..||..-...+...++
T Consensus 809 LAieLgMlEeA~~lYr~ckR~D-------------LlNKlyQs~g~w~eA~eiAE~~DR-iH-Lr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYD-------------LLNKLYQSQGMWSEAFEIAETKDR-IH-LRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH-------------HHHHHHHhcccHHHHHHHHhhccc-ee-hhhhHHHHHHHHHhhcc
Confidence 2345677888888887766543 344556667888888776544221 11 12456566666666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 041822 228 VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDE 307 (500)
Q Consensus 228 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 307 (500)
.+.|++.|++.... --.++..|. .++.....+.+++. |...|......+-..|++|.|+.+|..
T Consensus 874 i~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred HHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHH
Confidence 77777776543211 111222111 12222223333322 345566666666778888888888876
Q ss_pred chhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 308 MPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 308 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
... |-+++...|-.|++++|-.+-++-. |......+.+.|-..|++.+|..+|.+..
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 544 5566777777888888887765432 55666678888888899999998887764
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=2.2e-05 Score=79.75 Aligned_cols=240 Identities=11% Similarity=0.107 Sum_probs=132.4
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
+.....+..|+..+...+++++|.++.+..++.. |-....|-.....+...++.+.+.-+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~--------------- 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--N--------------- 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--h---------------
Confidence 4455566666666666777777777777665542 22222233333344455544433333 2
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHH
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFK 223 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~ 223 (500)
++.......++.-...+...|... ..+..++..+..+|-+.|+.++|..+++++++-.+-|..+.|.+...|.
T Consensus 89 -~l~~~~~~~~~~~ve~~~~~i~~~------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 89 -LIDSFSQNLKWAIVEHICDKILLY------GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred -hhhhcccccchhHHHHHHHHHHhh------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 222222333332223333333332 2244566777777777888888888888877744667777788777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 041822 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQ 303 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 303 (500)
.. ++++|.+++.+.+.. |...+++.++.+++.++.... |+. .+.-.+
T Consensus 162 e~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d---------------~d~f~~ 208 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDD---------------FDFFLR 208 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--ccc---------------chHHHH
Confidence 77 777777777666544 455556666666666666543 221 111112
Q ss_pred HHHhchhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 304 LFDEMPKR-NLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLM 363 (500)
Q Consensus 304 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 363 (500)
+.+.+... |..--..++-.+-..|-..++++++..+++.+.+.... |.....-++..|.
T Consensus 209 i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 209 IERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22222221 11222344555566666777777777777777766444 4455555555554
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=1.5e-05 Score=76.68 Aligned_cols=214 Identities=13% Similarity=0.117 Sum_probs=169.8
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGF 222 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~ 222 (500)
..+...+...|-..+|+.+|+++. .|.-+|.+|+..|+..+|..+..+..+ -+||...|..+.+..
T Consensus 402 ~~laell~slGitksAl~I~Erle-------------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE-------------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH-------------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence 446667888999999999999874 467789999999999999999988887 578999999998887
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 041822 223 KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQAR 302 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 302 (500)
....-+++|.++.+..-.+ .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+-.+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777778888887765432 22222223344789999999999877654 345667777778888999999999
Q ss_pred HHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 041822 303 QLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 380 (500)
+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++.+
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999887753 225678999999999999999999999999888633 556666677778899999999999998764
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=9.1e-06 Score=68.66 Aligned_cols=152 Identities=13% Similarity=0.031 Sum_probs=77.2
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD 227 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~ 227 (500)
.+...|+-+....+....... .+.+....+..+....+.|++..|...|.+....-++|..+|+.+.-+|.+.|+
T Consensus 75 a~~~~G~a~~~l~~~~~~~~~-----~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 75 ALYLRGDADSSLAVLQKSAIA-----YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHhcccccchHHHHhhhhcc-----CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 334444444444444443222 233444444455555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 041822 228 VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFD 306 (500)
Q Consensus 228 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 306 (500)
++.|..-|.+..+.- .-+...+|.+.-.|.-.|+.+.|..++......+ .-|...-..+.......|+++.|.++..
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 555555555555442 1133444555555555555555555555555443 1244444444445555555555555443
No 118
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=1.1e-05 Score=78.32 Aligned_cols=245 Identities=13% Similarity=0.087 Sum_probs=142.6
Q ss_pred cccCCChhhHHHHHH--HHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-----
Q 041822 172 GIRKFGSEEFNVLLQ--AFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR-GF----- 243 (500)
Q Consensus 172 ~~~~~~~~~~~~ll~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~----- 243 (500)
|+..-|..+-..+++ .|..-|+.+.|.+-.+-++ +...|..|.+.|.+..++|-|.-.+..|... |.
T Consensus 720 gle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 720 GLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred CccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHH
Confidence 333445555555554 3556677777766666554 4556777777777777666666555555432 11
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhH
Q 041822 244 ---RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAY 320 (500)
Q Consensus 244 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 320 (500)
.|+ .+-....-.....|..++|..+|++..+. ..|-+.|-..|.+++|.++-+.=.+..+ ..||
T Consensus 795 a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Ty 861 (1416)
T KOG3617|consen 795 AQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTY 861 (1416)
T ss_pred HHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhH
Confidence 111 11112222234567777777777776652 3444556667777777776554333332 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----------CC---------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 321 NAMISSLIRCRDLNAAMELMDEMEE----------KR---------IGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 321 ~~li~~~~~~g~~~~a~~~~~~~~~----------~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
.....-+-..++.+.|++.|++... .. -..|...|.--...+-..|+.+.|+.+|...++
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 5555555556667766666654211 10 011344444445555567778888877776653
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041822 382 KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 382 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
|-++++..|-.|+.++|-++-++- | |....-.+.+.|-..|++.+|..+|-+..
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 445666677788888888776543 2 33344467888888888888888887764
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.59 E-value=5.8e-05 Score=76.78 Aligned_cols=238 Identities=10% Similarity=0.098 Sum_probs=108.7
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHH
Q 041822 138 TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNI 217 (500)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 217 (500)
....+..++..+...+++++|.++.+...+. .|.....|-.+...+.+.++.+++..+ .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-----~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~ 88 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE-----HKKSISALYISGILSLSRRPLNDSNLL----------------N 88 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCcceehHHHHHHHHHhhcchhhhhhh----------------h
Confidence 3444555555555555555555555543333 222333333333344444443333222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 041822 218 LLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN 297 (500)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 297 (500)
++.......++..+..+...|.+.+ -+...+..+..+|-+.|+.++|..+++++.+.+ +-|..+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 2222333333333333333343332 123345555555555566666666666655554 33455555555555555 5
Q ss_pred HHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 041822 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDR 377 (500)
Q Consensus 298 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (500)
.++|.+++.+.... |...+++..+.++|.++....+. +...+ ..+.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f----------------~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFF----------------LRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHH----------------HHHHHH
Confidence 55555555544432 44444555555555555554211 11111 111111
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 041822 378 MIEG-KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLC 433 (500)
Q Consensus 378 ~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 433 (500)
+... |..--..++..+-..|-..++++++..+++.+++... -|.....-++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 1111 1111122333444555666677777777777776542 24444555555554
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.59 E-value=1.4e-05 Score=67.48 Aligned_cols=165 Identities=14% Similarity=0.049 Sum_probs=137.1
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 102 TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 102 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
|... ...-..+.-.|+-+....+........+ .+.......+....+.|++..|...|++.... .|+|..+|
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----~p~d~~~~ 137 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----APTDWEAW 137 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----CCCChhhh
Confidence 4445 6677777778888888887777655433 34455666888889999999999999998876 68999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 261 (500)
+.+.-+|.+.|+++.|..-|.+..+-.+-+...++.|.-.+.-.|+.+.|+.++......+.. |..+-..+.......|
T Consensus 138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g 216 (257)
T COG5010 138 NLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQG 216 (257)
T ss_pred hHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcC
Confidence 999999999999999999999999866678888999999999999999999999998877533 6777788888999999
Q ss_pred ChhHHHHHHHHHHH
Q 041822 262 CFGDAMRLFEEMER 275 (500)
Q Consensus 262 ~~~~a~~~~~~m~~ 275 (500)
++++|..+...-..
T Consensus 217 ~~~~A~~i~~~e~~ 230 (257)
T COG5010 217 DFREAEDIAVQELL 230 (257)
T ss_pred ChHHHHhhcccccc
Confidence 99999988776544
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=1.1e-05 Score=68.18 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=81.1
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH-HhcCC--H
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGF-KESGD--V 228 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~-~~~~~--~ 228 (500)
.++.+++...+++..+. .|.+...|..+...|...|++++|...|++..+-.+.+...+..+..++ ...|+ .
T Consensus 52 ~~~~~~~i~~l~~~L~~-----~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-----NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCc
Confidence 45556666666666555 4667777777777777777777777777777765556667777766653 55555 3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 229 TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
++|.+++++..+.... +...+..+...+.+.|++++|+..|+++.+..
T Consensus 127 ~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 127 PQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777777777766422 55666667777777777777777777776654
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=5.1e-05 Score=76.30 Aligned_cols=165 Identities=8% Similarity=0.042 Sum_probs=127.0
Q ss_pred CCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCCh
Q 041822 99 FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS 178 (500)
Q Consensus 99 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 178 (500)
++.+...+..+..+....|.+++|..+++.+.+..|+ .......+...+.+.+++++|+..+++.... .|.+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd--~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-----~p~~~ 154 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD--SSEAFILMLRGVKRQQGIEAGRAEIELYFSG-----GSSSA 154 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-----CCCCH
Confidence 4677888888889999999999999999999888776 4456667777888899999999999888877 46777
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
...+.+..++.+.|++++|..+|+++....+.+..++..+...+.+.|+.++|...|+...+.- .+....|+.++.
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~--- 230 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV--- 230 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH---
Confidence 8888888888999999999999999887555668888888888989999999999988887652 234455554432
Q ss_pred hcCChhHHHHHHHHHHHcC
Q 041822 259 KKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~~ 277 (500)
+...-...++++.-.+
T Consensus 231 ---~~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 231 ---DLNADLAALRRLGVEG 246 (694)
T ss_pred ---HHHHHHHHHHHcCccc
Confidence 3334445566554433
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=8.2e-05 Score=63.02 Aligned_cols=248 Identities=10% Similarity=0.027 Sum_probs=132.3
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 041822 186 QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD 265 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 265 (500)
+-+.-.|.+..++..-..... .+.+...-..+.++|...|.+..... +... |-.|.......+......-++.++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~-~~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSS-SKTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcc-ccchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHH
Confidence 334444555554443333221 12344444555566666665543332 2222 223334444433333333344333
Q ss_pred H-HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 266 A-MRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEME 344 (500)
Q Consensus 266 a-~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 344 (500)
- .++.+.+.......+......-...|+..|++++|.+..+... +......=+..+.+..+++-|...+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3444444444433343333334445777777888777766511 22233333444566777777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCC
Q 041822 345 EKRIGHDNVTYHTMFFGLMK----SSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420 (500)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (500)
+.. +..|.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..+++..+.... .
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~ 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-K 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-C
Confidence 652 55666666666654 23566777777777652 467777777777777777778888777777776542 2
Q ss_pred CHhHHHHHHHHHhcCCCHHH-HHHHHHHHH
Q 041822 421 HGHALDLLVTGLCSRGRWEE-AFECSKQML 449 (500)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~-A~~~~~~m~ 449 (500)
++.+...+|.+-...|...+ ..+.+.++.
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 44454444444444454433 334445554
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=6.5e-06 Score=79.04 Aligned_cols=241 Identities=9% Similarity=0.017 Sum_probs=185.5
Q ss_pred CCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCC
Q 041822 98 HFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFG 177 (500)
Q Consensus 98 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 177 (500)
+++|--..-..+...+.+.|-...|..+++++.. |...+.+|...|+..+|..+..+-.+ .+|+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~le------k~~d 456 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELE------KDPD 456 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhc------CCCc
Confidence 3455555667788888999999999999988753 56678889999999999888877655 3788
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
...|..+.+..-...-+++|.++++..-.+ .-..+.......+++.++.+.|+.-.+.. +....+|-.+-.+.
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~A 529 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAA 529 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHH
Confidence 999999999988888899999999887532 22222233344789999999998877663 33567888888888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041822 258 CKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 337 (500)
.+.++++.|.+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.
T Consensus 530 Lqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 89999999999999988754 3345679999999999999999999999999987 446778888888889999999999
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHHHH
Q 041822 338 ELMDEMEEKR-IGHDNVTYHTMFFGLM 363 (500)
Q Consensus 338 ~~~~~~~~~~-~~~~~~~~~~li~~~~ 363 (500)
+.+.++.... ...|......++....
T Consensus 608 ~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 608 KAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 9998776431 1114444444444433
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.54 E-value=8.2e-05 Score=74.84 Aligned_cols=209 Identities=13% Similarity=0.122 Sum_probs=135.6
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCChHHHHH-HHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc
Q 041822 59 PQTTPLSSTLVENVLGRLFAAHSNGLKALE-FFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLL 137 (500)
Q Consensus 59 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 137 (500)
|++.|.+.+.+...+-...+..|..++|=+ ++.++. .++...++.....+++.-...+.+..+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 84 (694)
T PRK15179 20 PTGGPASGPTILDLLEAALAEPGESEEAGRELLQQAR-------------QVLERHAAVHKPAAALPELLDYVRRYPH-- 84 (694)
T ss_pred CCCCCCCCcHHHhHHHHHhcCcccchhHHHHHHHHHH-------------HHHHHhhhhcchHhhHHHHHHHHHhccc--
Confidence 345555556666566565555666555533 222221 2333333333333444333444444433
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHH
Q 041822 138 TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNI 217 (500)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 217 (500)
+...+..+.....+.|.+++|+.+++..... .|.+......+...+.+.+++++|...+++..+..+.+....+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR-----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 3456667777777888888888888887776 46677777888888888888888888888888776777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 218 LLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLI 289 (500)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 289 (500)
+..++.+.|++++|..+|+++...+ +-+..++..+..++-..|+.++|...|++..+.- .+....|+..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 8888888888888888888887742 2346777777777888888888888888776542 24445555444
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=5.7e-05 Score=69.57 Aligned_cols=141 Identities=14% Similarity=0.123 Sum_probs=102.5
Q ss_pred HHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc
Q 041822 111 HILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT 190 (500)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 190 (500)
...-..|++++|++.++.+.+..|+++ ..+......+.+.++..+|.+.++++... .|.....+-.+..+|.+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~--~~~~~~~~i~~~~nk~~~A~e~~~kal~l-----~P~~~~l~~~~a~all~ 386 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQPDNP--YYLELAGDILLEANKAKEAIERLKKALAL-----DPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCccHHHHHHHHHHHh
Confidence 334567788888888888887766533 34555667778888888888888888766 34446667777788888
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 041822 191 QKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLF 270 (500)
Q Consensus 191 ~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 270 (500)
.|++.+|+.+++......+.|+..|..|..+|.+.|+..++..-..+ .|...|++++|...+
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l 448 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFL 448 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHH
Confidence 88888888888888877778888888888888888887766654433 344567788887777
Q ss_pred HHHHHc
Q 041822 271 EEMERV 276 (500)
Q Consensus 271 ~~m~~~ 276 (500)
....+.
T Consensus 449 ~~A~~~ 454 (484)
T COG4783 449 MRASQQ 454 (484)
T ss_pred HHHHHh
Confidence 776654
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=4.8e-06 Score=70.47 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=94.5
Q ss_pred CCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHH-HcCCC-
Q 041822 116 MRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAF-CTQKE- 193 (500)
Q Consensus 116 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~- 193 (500)
.++.+++...++...+..|+ +...|..+...|...|++++|...|++..+. .+.+...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~--~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENAELYAALATVLYYQAGQH 124 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCC
Confidence 56667777777777776555 4567777888888888888888888887776 466777787777763 56666
Q ss_pred -HHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041822 194 -MKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY 250 (500)
Q Consensus 194 -~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 250 (500)
.++|.+++++..+..+.+..++..+...+.+.|++++|...|+.+.+.. +|+..-+
T Consensus 125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 125 MTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 4888888888887667788888888888888888888888888887763 3344333
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.00014 Score=61.10 Aligned_cols=189 Identities=13% Similarity=0.129 Sum_probs=121.2
Q ss_pred cCChHHHHHHHHHhhcCC--C-CCCCHHh-HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccH
Q 041822 80 HSNGLKALEFFKFTLQHP--H-FTPTPDA-FEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSY 155 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~--~-~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (500)
..++++.++++..+.... | ..++..+ |..++-+....|+.+-|...++.+....|......-+..+. +-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhch
Confidence 456677777777766521 2 3344443 55666777777888888888888777766654443333332 5566777
Q ss_pred HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 041822 156 EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFY 235 (500)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 235 (500)
++|.+.++.+... .|.|..++-.-+...-..|+--+|++-++...+.+..|...|.-+...|...|++++|...+
T Consensus 103 ~~A~e~y~~lL~d-----dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 103 KEAIEYYESLLED-----DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hhHHHHHHHHhcc-----CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 8888888777766 36666777666666666777777777777777767777777777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHc
Q 041822 236 HEMVLRGFRPSVVTYNIRIDGYCKK---GCFGDAMRLFEEMERV 276 (500)
Q Consensus 236 ~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 276 (500)
+++.-.. +.+...+..+...+.-. .+.+-|.++|.+..+.
T Consensus 178 EE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 178 EELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7776552 22334444444443332 2344566666666654
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=1.2e-05 Score=64.38 Aligned_cols=105 Identities=10% Similarity=-0.025 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLL 185 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll 185 (500)
+......+...|++++|...|+......|. +...+..+..++...|++++|...|++.... .+.+...+..+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~~~a~~~lg 99 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW--SWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHHHHHHH
Confidence 334555566666666666666666665443 4445566666666666666666666666654 355666666666
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHH
Q 041822 186 QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNI 217 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 217 (500)
.++...|+.++|...|+...+..+.+...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 66666666666666666666543444444433
No 130
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.43 E-value=0.0017 Score=60.88 Aligned_cols=373 Identities=12% Similarity=0.131 Sum_probs=219.1
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChh
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE 179 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 179 (500)
|-|..+|..+++-+... ..+++++.++++....|. +...|..-+..-...++++....+|.+..... .+.+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~--s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv------LnlD 87 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPS--SPRAWKLYIERELASKDFESVEKLFSRCLVKV------LNLD 87 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH------hhHh
Confidence 67899999999988777 899999999999987665 45678888999999999999999999887653 3677
Q ss_pred hHHHHHHHHHc-CCCHH----HHHHHHHHhhh--CCC-CCHHhHHHHHHH---------HHhcCCHHHHHHHHHHHHHCC
Q 041822 180 EFNVLLQAFCT-QKEMK----EARSVFVKLLS--RFA-PNNKTMNILLLG---------FKESGDVTAMEMFYHEMVLRG 242 (500)
Q Consensus 180 ~~~~ll~~~~~-~~~~~----~A~~~~~~m~~--~~~-~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~g 242 (500)
.|..-+.---+ .|+.. ...+.|+-..+ +.. -+...|+..+.. +.++.+++.++++|.++...-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 77776654433 23322 23344444443 321 223334444433 233445677888888877652
Q ss_pred CCCCHHHHH------HHHHHH-------HhcCChhHHHHHHHHHHH--cCCCCCHHH---------------HHHHHHHH
Q 041822 243 FRPSVVTYN------IRIDGY-------CKKGCFGDAMRLFEEMER--VACLPSLQT---------------ITTLIHGA 292 (500)
Q Consensus 243 ~~~~~~~~~------~li~~~-------~~~g~~~~a~~~~~~m~~--~~~~~~~~~---------------~~~ll~~~ 292 (500)
+.-=...|+ .=|+.. -+...+-.|.++++++.. +|+..+..+ |-.+|.-
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w- 246 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW- 246 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-
Confidence 221112222 111111 123445667777777653 332211111 3223321
Q ss_pred HccCCHH---------HHHHHHHhc-hhCCCCCCHhh----H-HHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCC
Q 041822 293 GLVRNIH---------QARQLFDEM-PKRNLKPDIGA----Y-NAMISSLIRCRD-------LNAAMELMDEMEEKRIGH 350 (500)
Q Consensus 293 ~~~~~~~---------~a~~~~~~~-~~~~~~~~~~~----~-~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~~ 350 (500)
-+.+-++ ...-++++. .-.+..|++.- | ...-+.+...|+ .+++.++++.....-..-
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1111100 011111111 11122222111 0 111112333333 455666666554432222
Q ss_pred CHHHHHHHHHHHHHc---CChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCC-CHhHH
Q 041822 351 DNVTYHTMFFGLMKS---SGLEGVCKLYDRMIEG-KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP-HGHAL 425 (500)
Q Consensus 351 ~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 425 (500)
+.-+|..+...--.. ...+.....+.++... .+.|+ .+|..+++..-+..-++.|+.+|.++.+.+..+ ++.++
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa 405 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVA 405 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHH
Confidence 333444333221111 1356666777776643 23444 457778888888888999999999999987666 78888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 426 DLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASY-RMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 426 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
++++.-|| +++.+-|.++|+--... -+|...| ...+..+.+.++.+.++.+++...+.
T Consensus 406 ~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 406 AALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 99998877 78889999999986643 2344444 67789999999999999999988776
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00011 Score=62.35 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 193 EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 193 ~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
...+|.-+|++|.++.+|+..+.+-...++...|++++|+.++++....
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3445555555554444555555555555555555555555555544444
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=1.4e-05 Score=63.93 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=51.4
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~ 224 (500)
....+...|++++|...|+..... .|.+...|..+..++.+.|++++|...|+...+..+.+...+..+..++..
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMA-----QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 334445555566665555555444 344555555555555555555555555555555444555555555555555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 041822 225 SGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 225 ~~~~~~a~~~~~~~~~~ 241 (500)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555544
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.32 E-value=2.9e-05 Score=61.68 Aligned_cols=61 Identities=10% Similarity=-0.052 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (500)
..|..+...+...|++++|..+++...+..+.+...+..+..++...|+++.|...|+...
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333344444433333333223333333333333333444444444333333
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.30 E-value=3.1e-05 Score=61.52 Aligned_cols=107 Identities=12% Similarity=-0.032 Sum_probs=76.7
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041822 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRI 254 (500)
Q Consensus 175 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 254 (500)
|.+......+...+...|++++|.+.|+.+.+..+.+...+..+...+.+.|+++.|..+++...+.+ +.+...+..+.
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 33455566677777778888888888887776556677777788888888888888888887776664 33566666677
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 041822 255 DGYCKKGCFGDAMRLFEEMERVACLPSLQT 284 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 284 (500)
..|...|++++|.+.|+...+.. |+...
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 120 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEIC--GENPE 120 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc--cccch
Confidence 77777888888888887777654 44443
No 135
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.29 E-value=0.0021 Score=64.60 Aligned_cols=405 Identities=10% Similarity=-0.032 Sum_probs=200.9
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
....+..+...++...+.+.|..+.-...+......-...|..+.-.+.+.++...|..-|+...+..|. +...|..+
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk--D~n~W~gL 602 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK--DYNLWLGL 602 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch--hHHHHHHH
Confidence 3444556666677777777777664333332111111122333444456667777777777777766443 66677777
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC-------CCCCHHhHHHH
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-------FAPNNKTMNIL 218 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-------~~~~~~~~~~l 218 (500)
..+|.+.|++..|+++|.+.... .|.+...---....-+..|.+++|...+...... ...-..++-.+
T Consensus 603 GeAY~~sGry~~AlKvF~kAs~L-----rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 603 GEAYPESGRYSHALKVFTKASLL-----RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred HHHHHhcCceehHHHhhhhhHhc-----CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 77777777777777777766544 2333333233333445667777777776665531 11122222222
Q ss_pred HHHHHhcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh--H----HHHH-HHHHHHcCC------
Q 041822 219 LLGFKESGDV-------TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFG--D----AMRL-FEEMERVAC------ 278 (500)
Q Consensus 219 ~~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--~----a~~~-~~~m~~~~~------ 278 (500)
...+.-.|=. +.+.+.|.-.......-+...|-.+-++|.-.-..+ . ...+ +.+....+.
T Consensus 678 akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~ 757 (1238)
T KOG1127|consen 678 AKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDL 757 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhH
Confidence 2222222222 222222222222211112222222222111000000 0 0000 011111111
Q ss_pred --------------CCCHHHHHHHHHHHHc----c----CCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 041822 279 --------------LPSLQTITTLIHGAGL----V----RNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAA 336 (500)
Q Consensus 279 --------------~~~~~~~~~ll~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 336 (500)
..+..+|..+...|.+ . .+...|+..+....+.. .-+..+|+.|.- ....|.+.-|
T Consensus 758 l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGV-lsg~gnva~a 835 (1238)
T KOG1127|consen 758 LFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGV-LSGIGNVACA 835 (1238)
T ss_pred HHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHH-hhccchhhhh
Confidence 1123333333333322 1 12345667777666542 224455555543 3555777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHH-
Q 041822 337 MELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLI- 414 (500)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~- 414 (500)
...|-.-...... ...+|..+...+.+..+++.|...|...... .|+ ...+..........|+.-+...+|..--
T Consensus 836 QHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~e 912 (1238)
T KOG1127|consen 836 QHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDE 912 (1238)
T ss_pred hhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHH
Confidence 7777655544333 5667777777788889999999999887754 443 4445444444455677777777776522
Q ss_pred -H--CCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHHcCchhHHHHHHHH
Q 041822 415 -D--RGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR---------RRQVSEASYRMLQRYLVQANANEKLEDLDRM 482 (500)
Q Consensus 415 -~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 482 (500)
. .|--++..-|-+........|+.++-+...+++-.. +..-+...|.+......+.+.++++.++...
T Consensus 913 l~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 913 LCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred hhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 1 233445444444444455667766555444443211 3333445566666666666666665555443
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00082 Score=56.73 Aligned_cols=164 Identities=13% Similarity=0.061 Sum_probs=105.2
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLG 221 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~ 221 (500)
+..++-+....|+.+.|..+++++...- |-+..+-..-.-.+-..|++++|+++++.+++..|.|..++.-=+..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-----p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-----PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-----CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHH
Confidence 3444555566788888888888877652 22222222222234456788888888888887667777777766666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCH
Q 041822 222 FKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGL---VRNI 298 (500)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---~~~~ 298 (500)
.-..|+--+|.+-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.. +.+...+..+...+.- ..+.
T Consensus 130 lka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHH
Confidence 66667766777666666654 45578888888888888888888888888887654 2233333344443332 3346
Q ss_pred HHHHHHHHhchhCC
Q 041822 299 HQARQLFDEMPKRN 312 (500)
Q Consensus 299 ~~a~~~~~~~~~~~ 312 (500)
..+.++|.+..+..
T Consensus 208 ~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 208 ELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHHhC
Confidence 66777777776653
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.26 E-value=4.8e-05 Score=70.70 Aligned_cols=124 Identities=17% Similarity=0.199 Sum_probs=86.0
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLL 220 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~ 220 (500)
....++..+...++++.|..+|+++.+. ++.....+++.+...++-.+|.+++++..+..+.+......-..
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~--------~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER--------DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAE 242 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc--------CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3445566666677777888887777654 23345556777777777777777777777655666666776677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 221 GFKESGDVTAMEMFYHEMVLRGFRPS-VVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
.+.+.++.+.|..+.+++.+. .|+ -.+|..|..+|.+.|+++.|+..++.+.
T Consensus 243 fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777777766 343 4477777777777777777777776654
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=0.00049 Score=63.67 Aligned_cols=122 Identities=11% Similarity=-0.038 Sum_probs=77.8
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhH
Q 041822 187 AFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS-VVTYNIRIDGYCKKGCFGD 265 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~ 265 (500)
.+...|+.++|+..++.+....|-|...+......+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 3445666677777777766655666666666666677777777777776666655 344 4445556666667777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 266 AMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 266 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
|+..++...... +-|...|..|..+|...|+..++..-..+....
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 777766666543 455666777777777777666666665555443
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=5.8e-05 Score=70.17 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=107.2
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHH
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFN 182 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 182 (500)
......++..+...++++.|+++|+++.+..|. ....++..+...++..+|.+++.+.... .+.+.....
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe-----v~~~LA~v~l~~~~E~~AI~ll~~aL~~-----~p~d~~LL~ 238 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE-----VAVLLARVYLLMNEEVEAIRLLNEALKE-----NPQDSELLN 238 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc-----HHHHHHHHHHhcCcHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 344567777788889999999999999987654 3445777777888999999999988866 466778888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
.-...+.+.++.+.|+++.+++.+-.|-+..+|..|..+|.+.|+++.|+..++.+--
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888899999999999999999986677778999999999999999999988876653
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.21 E-value=0.0084 Score=59.84 Aligned_cols=368 Identities=12% Similarity=0.099 Sum_probs=197.8
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.+......+..+|...+..++|..+|+++.+. -|+..-...+..++.|-+++.+-.+.--++-+..|..+ +-.|..
T Consensus 75 ~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~-yyfWsV 150 (932)
T KOG2053|consen 75 TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA-YYFWSV 150 (932)
T ss_pred CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc-chHHHH
Confidence 47778888999999999999999999999876 47788888888999999888766555555555444432 223333
Q ss_pred HHHHHhccccHHH---------HHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhh-h-CCCCCHH
Q 041822 145 MLSRISKFQSYEE---------TLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL-S-RFAPNNK 213 (500)
Q Consensus 145 l~~~~~~~g~~~~---------a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~-~-~~~~~~~ 213 (500)
+--........+. |.+.++.+.+.+ | .-.+..-...-...+...|++++|.+++..-. + -.+-+..
T Consensus 151 ~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~--g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~ 227 (932)
T KOG2053|consen 151 ISLILQSIFSENELLDPILLALAEKMVQKLLEKK--G-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLY 227 (932)
T ss_pred HHHHHHhccCCcccccchhHHHHHHHHHHHhccC--C-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchH
Confidence 2222222223333 333444444432 1 11111122333344556788999999994433 3 3344556
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------------cCChhHHHHHHHHHHHcC
Q 041822 214 TMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK----------------KGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 214 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----------------~g~~~~a~~~~~~m~~~~ 277 (500)
.-+.-+..+...++|.+..++-.++...|. |. |...++.+.+ .+..+...+...+.....
T Consensus 228 l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~ 303 (932)
T KOG2053|consen 228 LENKKLDLLKLLNRWQELFELSSRLLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK 303 (932)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc
Confidence 666778888899999999999999998863 32 4444443222 112222222222222221
Q ss_pred CCCCHHHHHHHHHH---HHccCCHHHHHHHH-HhchhCC-CCCC---------HhhHHHHHHHHH---------------
Q 041822 278 CLPSLQTITTLIHG---AGLVRNIHQARQLF-DEMPKRN-LKPD---------IGAYNAMISSLI--------------- 328 (500)
Q Consensus 278 ~~~~~~~~~~ll~~---~~~~~~~~~a~~~~-~~~~~~~-~~~~---------~~~~~~li~~~~--------------- 328 (500)
..++ |-+-+.+ +..-|+.+++.-.| ++.-..- +.-| ..-...++..+.
T Consensus 304 -~Rgp--~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~ 380 (932)
T KOG2053|consen 304 -SRGP--YLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ 380 (932)
T ss_pred -ccCc--HHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 1111 2222222 23456666644332 2221110 0001 111122222221
Q ss_pred ---------hcC-----CHHHHHHHHHHHH---HCC------CCCCHH---------HHHHHHHHHHHcCChhH---HHH
Q 041822 329 ---------RCR-----DLNAAMELMDEME---EKR------IGHDNV---------TYHTMFFGLMKSSGLEG---VCK 373 (500)
Q Consensus 329 ---------~~g-----~~~~a~~~~~~~~---~~~------~~~~~~---------~~~~li~~~~~~g~~~~---a~~ 373 (500)
-.| ..+.-..++.+.. +.| .-|+.. +-+.|+..+.+.++... |+-
T Consensus 381 h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~ 460 (932)
T KOG2053|consen 381 HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAIT 460 (932)
T ss_pred HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 112 1222333332222 122 222322 23567788888888664 344
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041822 374 LYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448 (500)
Q Consensus 374 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (500)
+++...... .-|..+-..+|+.|+-.|-+..|.+++..+.-..+..|..-| .+..-+...|++..+...++..
T Consensus 461 LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~~~~t~g~~~~~s~~~~~~ 533 (932)
T KOG2053|consen 461 LLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFRRAETSGRSSFASNTFNEH 533 (932)
T ss_pred HHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHHHHHhcccchhHHHHHHHH
Confidence 444443321 234555567888899899999999999888765566554444 2334445566666666655554
No 141
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=0.0022 Score=61.82 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH
Q 041822 246 SVVTYNIRIDGYCKKGCFGDAMRLF 270 (500)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~ 270 (500)
+....-.+.+++.+.|.-++|.+.|
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHH
Confidence 3344444555555555555555544
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.20 E-value=3e-06 Score=48.99 Aligned_cols=33 Identities=42% Similarity=0.635 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 041822 424 ALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS 456 (500)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 456 (500)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.17 E-value=3.2e-06 Score=48.88 Aligned_cols=33 Identities=45% Similarity=0.740 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS 281 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 281 (500)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555556666655555555554
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=3.8e-06 Score=48.19 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 041822 423 HALDLLVTGLCSRGRWEEAFECSKQMLVRRRQV 455 (500)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 455 (500)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.15 E-value=0.00017 Score=57.85 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHhhhCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhH
Q 041822 191 QKEMKEARSVFVKLLSRFAPN---NKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS--VVTYNIRIDGYCKKGCFGD 265 (500)
Q Consensus 191 ~~~~~~A~~~~~~m~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~ 265 (500)
.++...+...++.+.+..+.+ ....-.+...+...|++++|...|+........++ ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555433333 12222333455555555555555555555431111 1122334445555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 041822 266 AMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDE 307 (500)
Q Consensus 266 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 307 (500)
|+..++...... .....+......|.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554432221 2233344444555555555555555543
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=6.2e-06 Score=47.26 Aligned_cols=32 Identities=34% Similarity=0.529 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVACLP 280 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 280 (500)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555443
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.09 E-value=0.00028 Score=56.60 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=21.7
Q ss_pred CCChHHHHHHHHHhHhhCCCC-ccHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 041822 116 MRYFDQAWELMSHVQRTHPSL-LTLKSMSIMLSRISKFQSYEETLEAFDRMER 167 (500)
Q Consensus 116 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 167 (500)
.++...+...++.+.+..|.. ........+...+...|++++|...|+.+..
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 444444444444444443332 1112222233344444444444444444443
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.05 E-value=9.1e-05 Score=69.19 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHH
Q 041822 350 HDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG--KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDL 427 (500)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 427 (500)
.+......++..+....+.+.+.+++.+.+.. ....-..|..++++.|.+.|..+.+..++..=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 35555666666666666666666666666543 1212233445667777777777777777766666677777777777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 041822 428 LVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQA 470 (500)
Q Consensus 428 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 470 (500)
|++.+.+.|++..|.++..+|..++...+..|+..-+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777666665555556655444444443
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.02 E-value=0.00025 Score=54.71 Aligned_cols=104 Identities=8% Similarity=0.106 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc-cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLL-TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
+......+.+.|++++|.+.++.+.+..|+.. .......+...+.+.|+++.|...|+.+...... .+....++..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK--SPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC--CCcccHHHHHH
Confidence 33444445555555555555555554443321 1223334444555555555555555555443100 01112344444
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCC
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRFAPN 211 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~~~~ 211 (500)
..++.+.|+.++|.+.++++.+..+.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 555555555555555555555433333
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.98 E-value=0.00015 Score=67.73 Aligned_cols=124 Identities=11% Similarity=0.100 Sum_probs=98.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhh
Q 041822 242 GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV--ACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGA 319 (500)
Q Consensus 242 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 319 (500)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+..++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45667777888888888888888888888888765 2223344566889999999999999999988888899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 041822 320 YNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKS 365 (500)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 365 (500)
+|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888776666777777666666655
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.88 E-value=1.9e-05 Score=44.01 Aligned_cols=30 Identities=33% Similarity=0.596 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 041822 424 ALDLLVTGLCSRGRWEEAFECSKQMLVRRR 453 (500)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 453 (500)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577788888888888888888888877663
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.86 E-value=1.8e-05 Score=44.15 Aligned_cols=29 Identities=48% Similarity=0.915 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555555443
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.86 E-value=0.00028 Score=51.58 Aligned_cols=74 Identities=16% Similarity=0.283 Sum_probs=34.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGF-RPSVVTYNIRIDGYCKKG--------CFGDAMRLFEEMERVACLPSLQTITTLI 289 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~~~~~~~~~ll 289 (500)
|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333344555555555555555555 455555555554444321 1223344444444444444444444444
Q ss_pred HHH
Q 041822 290 HGA 292 (500)
Q Consensus 290 ~~~ 292 (500)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.86 E-value=0.00068 Score=52.23 Aligned_cols=96 Identities=8% Similarity=-0.002 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHH
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPN---NKTMNILLLGFKESGDVTAMEMFYHEMVLRGF--RPSVVTYNIRID 255 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~ 255 (500)
+..+...+.+.|++++|.+.|+.+.+..+.+ ...+..+..++.+.|+++.|...++.+..... ......+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 4444555555566666666665555422211 23444455555666666666666665554311 111334445555
Q ss_pred HHHhcCChhHHHHHHHHHHHc
Q 041822 256 GYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~ 276 (500)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555566666666666655554
No 155
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.00042 Score=62.36 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHH
Q 041822 193 EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRP---SVVTYNIRIDGYCKKGCFGDAMRL 269 (500)
Q Consensus 193 ~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~ 269 (500)
+.+.|.++|+...+.++.+...|..-+..+.+.++.+.|+.+|+..... +.+ ....|...++.=.+.|+.+.+.++
T Consensus 51 d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v 129 (280)
T PF05843_consen 51 DPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKV 129 (280)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3333444444444434444444444444444444444444444444433 111 112445555544455555555555
Q ss_pred HHHHHH
Q 041822 270 FEEMER 275 (500)
Q Consensus 270 ~~~m~~ 275 (500)
.+++.+
T Consensus 130 ~~R~~~ 135 (280)
T PF05843_consen 130 EKRAEE 135 (280)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 156
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.83 E-value=0.00045 Score=50.48 Aligned_cols=77 Identities=17% Similarity=0.340 Sum_probs=44.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCC--------HHHHHHHHHhchhCCCCCCHhhHHH
Q 041822 252 IRIDGYCKKGCFGDAMRLFEEMERVAC-LPSLQTITTLIHGAGLVRN--------IHQARQLFDEMPKRNLKPDIGAYNA 322 (500)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~ 322 (500)
..|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..- +-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555777777777777777777 6777777777766554321 2234444555555555555555555
Q ss_pred HHHHHH
Q 041822 323 MISSLI 328 (500)
Q Consensus 323 li~~~~ 328 (500)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 554443
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.83 E-value=0.0049 Score=55.78 Aligned_cols=115 Identities=15% Similarity=0.189 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHH
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES-GDVTAMEMFYHEMVLR----GFR-PSVVTYNIRID 255 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~ 255 (500)
...+..|...|++..|-+++..+ ...|... |+++.|.+.|++..+. |-. --..++..+..
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~l--------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKEL--------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHH--------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 33444555555555555444433 3444444 6666666666665432 200 01223445556
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 256 GYCKKGCFGDAMRLFEEMERVACL-----PSLQ-TITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
.+.+.|++++|.++|++....... .+.. .|-..+-++...||+..|.+.+++...
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666677777777777766543211 1111 112222234445666666666665544
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.82 E-value=0.00036 Score=50.97 Aligned_cols=93 Identities=16% Similarity=0.117 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 261 (500)
..+...+...|++++|...++...+..+.+...+..+...+...++++.|...++...+.. +.+..++..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 3444455555555555555555554333344455555555555555555555555555442 112334445555555555
Q ss_pred ChhHHHHHHHHHHH
Q 041822 262 CFGDAMRLFEEMER 275 (500)
Q Consensus 262 ~~~~a~~~~~~m~~ 275 (500)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 55555555555443
No 159
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.78 E-value=0.022 Score=49.98 Aligned_cols=73 Identities=8% Similarity=-0.028 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhH---HHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAF---EKTLHILARMRYFDQAWELMSHVQRTHPSLLTLK 140 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 140 (500)
++...+..-.. +...|++++|++.|+.+.... |-+.... -.++.++-+.+++++|...+++..+..|+.+...
T Consensus 31 ~~~~~Y~~A~~-~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQ-KLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 44555544333 456899999999999998853 3333332 4566778889999999999999999888776543
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.78 E-value=0.00064 Score=61.21 Aligned_cols=130 Identities=10% Similarity=0.102 Sum_probs=78.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHhccccCCChhhHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSR-ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV 183 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (500)
+|..++..+-+.+..+.|+.+|.+..+ ....+...|...... |...++.+.|.++|+...+. .+.+...|..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-----f~~~~~~~~~ 75 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-----FPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-----HTT-HHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----CCCCHHHHHH
Confidence 566666666666667777777777652 234455666555544 22345555577777776665 3556666677
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNN---KTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
-++.+.+.++.+.|..+|++....++++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 76 Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 76 YLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777777765433333 46666666666677777777766666654
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.77 E-value=0.00038 Score=50.85 Aligned_cols=94 Identities=18% Similarity=0.160 Sum_probs=68.1
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGF 222 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~ 222 (500)
..+...+...|++++|...+++..+. .+.+...+..+...+...+++++|.+.|+...+..+.+..++..+...+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL-----DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 34555566778888888888777655 3444566777777788888888888888887765555666777778888
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 041822 223 KESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~ 241 (500)
...|+++.|...+....+.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 8888888888887776644
No 162
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.74 E-value=0.0043 Score=49.88 Aligned_cols=125 Identities=13% Similarity=0.156 Sum_probs=70.9
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhc
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISK 151 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (500)
.|...+...|++.+|...|++...- -+-.|......+.++....+++..|...++.+.+.+|...+......+.+.+..
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa 172 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA 172 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh
Confidence 4455555666666666666666653 345566666666666666666666666666666655555555555556666666
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVK 203 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 203 (500)
.|.+.+|...|+..... -|+...-......+.+.|+.+++..-+..
T Consensus 173 ~g~~a~Aesafe~a~~~------ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 173 QGKYADAESAFEVAISY------YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred cCCchhHHHHHHHHHHh------CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 66666666666665543 22333333333344455554444443333
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.73 E-value=0.0022 Score=53.23 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=35.8
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKF-GSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLG 221 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~ 221 (500)
..+...+...|++++|...|++...... .++ ....+..+...+.+.|++++|...+++..+..+.+...+..+..+
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3333344444444444444444433210 011 123444455555555555555555555544333344444444444
Q ss_pred HHhcCC
Q 041822 222 FKESGD 227 (500)
Q Consensus 222 ~~~~~~ 227 (500)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 444444
No 164
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.73 E-value=0.00053 Score=56.81 Aligned_cols=87 Identities=24% Similarity=0.277 Sum_probs=51.7
Q ss_pred CCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-----------------hHHH
Q 041822 210 PNNKTMNILLLGFKE-----SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF-----------------GDAM 267 (500)
Q Consensus 210 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-----------------~~a~ 267 (500)
.|..+|..++..|.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+ +-|+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHhccCcHHHHHHH
Confidence 366666666666654 35666666777777777888888888888777654 222 2344
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 041822 268 RLFEEMERVACLPSLQTITTLIHGAGLVRN 297 (500)
Q Consensus 268 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 297 (500)
+++++|...|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 455555555555555555555554444433
No 165
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.72 E-value=0.034 Score=50.34 Aligned_cols=289 Identities=14% Similarity=0.100 Sum_probs=189.8
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHH--HcCCCHHHHHHHHHHhhhCCCCCHHh----HHHHHHHHH
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAF--CTQKEMKEARSVFVKLLSRFAPNNKT----MNILLLGFK 223 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~A~~~~~~m~~~~~~~~~~----~~~l~~~~~ 223 (500)
+..|+-..|.++-.+-.+. ...|......++.+- .-.|+.+.|.+-|+.|.. |..| ...|.-..-
T Consensus 95 agAGda~lARkmt~~~~~l-----lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAq 165 (531)
T COG3898 95 AGAGDASLARKMTARASKL-----LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQ 165 (531)
T ss_pred hccCchHHHHHHHHHHHhh-----hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHH
Confidence 3557777777776665544 344666666666553 447999999999999986 4443 333334445
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHH---ccCC
Q 041822 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA-CLPSLQT--ITTLIHGAG---LVRN 297 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~--~~~ll~~~~---~~~~ 297 (500)
+.|+.+.|.++-+........ =...+...+...|..|+|+.|+++++.-.... +.+++.- -..|+.+-. -..+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 678889999888777665321 34577889999999999999999999876533 3344321 223333211 1234
Q ss_pred HHHHHHHHHhchhCCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 041822 298 IHQARQLFDEMPKRNLKPDIGA-YNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYD 376 (500)
Q Consensus 298 ~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 376 (500)
...|...-.+..+ +.||..- -..-..++.+.|++.++-.+++.+-+....|+.. .+..+.+.|+ .+.+-++
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlk 316 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHH
Confidence 5555555544444 3455432 2344577899999999999999999886666543 2223344454 4444444
Q ss_pred HHHh-CCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCC
Q 041822 377 RMIE-GKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLC-SRGRWEEAFECSKQMLVRRR 453 (500)
Q Consensus 377 ~~~~-~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~ 453 (500)
+... ..++|| ......+.++....|++..|..--+...+ ..|....|..|.+.-. ..|+-.++...+-+.....-
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 4432 124555 55666777888888999988887777766 4588888887777654 45999999999999887655
Q ss_pred CCCHH
Q 041822 454 QVSEA 458 (500)
Q Consensus 454 ~~~~~ 458 (500)
.|+..
T Consensus 395 dPaW~ 399 (531)
T COG3898 395 DPAWT 399 (531)
T ss_pred CCccc
Confidence 56543
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.72 E-value=0.0021 Score=53.33 Aligned_cols=90 Identities=9% Similarity=-0.035 Sum_probs=52.7
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCcc-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHH
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLT-LKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFN 182 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 182 (500)
..+..+...+...|++++|...|++..+..++... ...+..+...+.+.|++++|...+++.... .+.+...+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 110 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-----NPKQPSALN 110 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHHH
Confidence 34555556666667777777777666654433221 235555666666677777777777666554 344555566
Q ss_pred HHHHHHHcCCCHHHHH
Q 041822 183 VLLQAFCTQKEMKEAR 198 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~ 198 (500)
.+...+...|+...+.
T Consensus 111 ~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 111 NIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHcCChHhHh
Confidence 6666666666544433
No 167
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.72 E-value=0.035 Score=54.02 Aligned_cols=167 Identities=13% Similarity=0.142 Sum_probs=80.6
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHH
Q 041822 78 AAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEE 157 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 157 (500)
-+.+++. .+++..++... ++...-.+= .-+--|.+++|.+++-++.+++ ..+..+.+.|++-.
T Consensus 716 Vrc~dY~-Gik~vkrl~~i----~s~~~q~ae--i~~~~g~feeaek~yld~drrD----------LAielr~klgDwfr 778 (1189)
T KOG2041|consen 716 VRCGDYA-GIKLVKRLRTI----HSKEQQRAE--ISAFYGEFEEAEKLYLDADRRD----------LAIELRKKLGDWFR 778 (1189)
T ss_pred hhhcccc-chhHHHHhhhh----hhHHHHhHh--HhhhhcchhHhhhhhhccchhh----------hhHHHHHhhhhHHH
Confidence 3445554 34455554432 233332222 2234577888888887665531 13344455555555
Q ss_pred HHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHh-------------------h---hCCCCCHHhH
Q 041822 158 TLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKL-------------------L---SRFAPNNKTM 215 (500)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m-------------------~---~~~~~~~~~~ 215 (500)
..++++.=-... ....-..+|+.+...+.....|++|.+.|..- . ...+.|....
T Consensus 779 V~qL~r~g~~d~---dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~ll 855 (1189)
T KOG2041|consen 779 VYQLIRNGGSDD---DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELL 855 (1189)
T ss_pred HHHHHHccCCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchH
Confidence 555544310000 00011223444444444444444444443321 1 1345566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 216 NILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 216 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
-.+..++...|.-++|.+.|- +.+. | .+.+..|...++|.+|.++-+..
T Consensus 856 p~~a~mf~svGMC~qAV~a~L---r~s~-p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAYL---RRSL-P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHHH---hccC-c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 677777777777776665542 2221 1 12345566667777777665543
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.69 E-value=0.001 Score=55.02 Aligned_cols=64 Identities=6% Similarity=-0.127 Sum_probs=32.6
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc-cHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLL-TLKSMSIMLSRISKFQSYEETLEAFDRMER 167 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 167 (500)
..+..+...+...|++++|...|+......++.. ...++..+...+...|++++|+..+++...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555555555666666666666554432221 122444455555555555555555555544
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.67 E-value=0.022 Score=50.02 Aligned_cols=61 Identities=11% Similarity=-0.070 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHc
Q 041822 215 MNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY---NIRIDGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
+......+.+.|+++.|...|+.+...-.. +.... -.+..+|.+.+++++|...+++..+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333444455566677777666666654211 11111 23445666667777777777766654
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.66 E-value=0.013 Score=53.07 Aligned_cols=129 Identities=13% Similarity=0.098 Sum_probs=73.9
Q ss_pred HHHHHHHHcC-CCHHHHHHHHHHhhh---C-CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH-
Q 041822 182 NVLLQAFCTQ-KEMKEARSVFVKLLS---R-FAP--NNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFR-----PSVV- 248 (500)
Q Consensus 182 ~~ll~~~~~~-~~~~~A~~~~~~m~~---~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~- 248 (500)
..+...|... |++++|.+.|++..+ . ..+ -..++..+...+.+.|++++|..+|++....-.. .+..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3344456666 788888888888764 1 111 1345667778888899999999999888765322 1222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHHcc--CCHHHHHHHHHhchh
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVA--CLPS--LQTITTLIHGAGLV--RNIHQARQLFDEMPK 310 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~--~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~ 310 (500)
.|-..+-++...|++..|.+.|++..... +..+ ......|+.+|-.. ..++.+..-|+.+.+
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 22233445666789999999999887543 2222 23444555554432 225555555555544
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.66 E-value=0.00018 Score=51.43 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHH
Q 041822 117 RYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKE 196 (500)
Q Consensus 117 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 196 (500)
|+++.|+.+++.+.+..|...+...+..+..+|.+.|++++|..++++ .+.+ +.+....-.+..++.+.|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----PSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----HCHHHHHHHHHHHHHHTT-HHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----CCCHHHHHHHHHHHHHhCCHHH
Confidence 445555555555554433211222333344445555555555555544 1111 1122223333444555555555
Q ss_pred HHHHHH
Q 041822 197 ARSVFV 202 (500)
Q Consensus 197 A~~~~~ 202 (500)
|+++|+
T Consensus 77 Ai~~l~ 82 (84)
T PF12895_consen 77 AIKALE 82 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555444
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.65 E-value=0.0012 Score=54.62 Aligned_cols=82 Identities=12% Similarity=-0.043 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHH
Q 041822 140 KSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILL 219 (500)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~ 219 (500)
..+..+...+...|++++|+..|++....... ......+|..+...+...|++++|...++...+..+....++..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEID--PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 34445555556666777777766666543200 0112235666666666666666666666666653333444455555
Q ss_pred HHHH
Q 041822 220 LGFK 223 (500)
Q Consensus 220 ~~~~ 223 (500)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 173
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.60 E-value=0.0044 Score=49.05 Aligned_cols=85 Identities=9% Similarity=0.038 Sum_probs=34.2
Q ss_pred HHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCC
Q 041822 113 LARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQK 192 (500)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 192 (500)
+...|++++|.++|+.+....|. +...|..+..++-..|++++|+..|...... .+.+...+-.+..++...|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----KIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCchHHHHHHHHHHHcC
Confidence 33444444444444444443322 2223333333444444444444444443333 2333344444444444444
Q ss_pred CHHHHHHHHHHh
Q 041822 193 EMKEARSVFVKL 204 (500)
Q Consensus 193 ~~~~A~~~~~~m 204 (500)
+.+.|.+.|+..
T Consensus 118 ~~~~A~~aF~~A 129 (157)
T PRK15363 118 NVCYAIKALKAV 129 (157)
T ss_pred CHHHHHHHHHHH
Confidence 444444444433
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.58 E-value=0.0022 Score=59.94 Aligned_cols=90 Identities=8% Similarity=-0.108 Sum_probs=47.6
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 226 (500)
..+...|++++|++.|++.... .+.+...|..+..+|.+.|++++|+..++++++..+.+...|..+..++...|
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~-----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL-----DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 3344455555555555555544 24445555555555555555555555555555433444555555555555555
Q ss_pred CHHHHHHHHHHHHHC
Q 041822 227 DVTAMEMFYHEMVLR 241 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~ 241 (500)
+++.|...|+...+.
T Consensus 85 ~~~eA~~~~~~al~l 99 (356)
T PLN03088 85 EYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555544
No 175
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.58 E-value=0.002 Score=60.29 Aligned_cols=87 Identities=9% Similarity=-0.024 Sum_probs=40.7
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041822 188 FCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAM 267 (500)
Q Consensus 188 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 267 (500)
+...|++++|++.|++.++..+.+...|..+..++.+.|++++|...++.+++.. +.+...|..+..+|...|++++|+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3344455555555555544334444444444445555555555555554444432 113334444444444455555555
Q ss_pred HHHHHHHH
Q 041822 268 RLFEEMER 275 (500)
Q Consensus 268 ~~~~~m~~ 275 (500)
..|++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55554444
No 176
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.57 E-value=0.0017 Score=51.31 Aligned_cols=95 Identities=8% Similarity=-0.018 Sum_probs=74.5
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLG 221 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~ 221 (500)
+-.+...+...|++++|.++|+.+... .+.+..-|-.|.-++-..|++++|+..|.....-.+.|...+-.+..+
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~-----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIY-----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 334444566788888888888888776 466777788888888888888888888888876446778888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 041822 222 FKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~ 241 (500)
+...|+.+.|++-|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877765
No 177
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.55 E-value=0.0023 Score=53.10 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhh
Q 041822 245 PSVVTYNIRIDGYCKK-----GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGA 319 (500)
Q Consensus 245 ~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 319 (500)
.|..+|..+++.|.+. |..+=....+..|.+.|+.-|..+|+.|++.+=+ |.+- |.. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-F 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-H
Confidence 3556666666655542 4444444555555555555555555555554332 1111 100 0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 041822 320 YNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG 367 (500)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 367 (500)
+.++..-| -.+-+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 108 fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11100000 12345566777777777777777777777776655443
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.45 E-value=0.00052 Score=49.03 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 041822 153 QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAME 232 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 232 (500)
|+++.|+..|+++.+... ..++...+..+..++.+.|++++|..+++. .+..+.+......+..++.+.|++++|.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~---~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDP---TNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHC---GTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCC---CChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 455555555555555430 001223333345555555555555555554 2111112233333344555555555555
Q ss_pred HHHH
Q 041822 233 MFYH 236 (500)
Q Consensus 233 ~~~~ 236 (500)
.+++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 179
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.44 E-value=0.09 Score=48.05 Aligned_cols=111 Identities=14% Similarity=0.030 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041822 318 GAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFF 397 (500)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 397 (500)
.+.+..|.-+...|+...|.++-.+.. + |+...|-.-+.+++..++|++..++... . -++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHH
Confidence 345555666777888888877765553 2 5888888888888888888877766432 1 1235577788888
Q ss_pred HHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041822 398 CVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448 (500)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (500)
.+.|+..+|..+... + .+..-+..|.+.|++.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888888777765 1 1245567778888888887764443
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.0092 Score=45.47 Aligned_cols=108 Identities=12% Similarity=0.141 Sum_probs=74.1
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCC--HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc-cHHHHHHHHHHH
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPT--PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLL-TLKSMSIMLSRI 149 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 149 (500)
+...+...|++++|+.+|+..+.. |...+ ...+..+.+.+...|++++|..+++......|+.. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345566789999999999999886 54443 34567788888999999999999999988766521 112222233456
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHH
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFC 189 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 189 (500)
...|+.++|++.+-..... +...|.--|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la~--------~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAE--------TLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 7889999999888665433 2235555555554
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.38 E-value=0.015 Score=57.02 Aligned_cols=142 Identities=13% Similarity=0.013 Sum_probs=83.6
Q ss_pred CCCHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CChhHHHHHHHHHHh
Q 041822 314 KPDIGAYNAMISSLIRCR-----DLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKS--------SGLEGVCKLYDRMIE 380 (500)
Q Consensus 314 ~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~~~~ 380 (500)
+.+...|...+.+..... ..+.|..+|++..+..+. ....|..+..++... ++...+.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 445566666666543322 255667777766665322 223333333322221 112233333333333
Q ss_pred C-CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHH
Q 041822 381 G-KFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEAS 459 (500)
Q Consensus 381 ~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 459 (500)
. ....+...|..+.-.....|++++|...++++.+.. |+...|..+...+...|+.++|.+.+++.... .|...|
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCch
Confidence 2 123345666666555566788888888888888865 67778888888888888888888888888743 444444
Q ss_pred H
Q 041822 460 Y 460 (500)
Q Consensus 460 ~ 460 (500)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 4
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.36 E-value=0.00062 Score=46.33 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=24.3
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
.|++++|++.|+++... .|.+..++..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR-----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHH-----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555444 234444444555555555555555555555443
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.36 E-value=0.00082 Score=45.21 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=44.6
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCC
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPS 135 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 135 (500)
+...+...|++++|++.|+.+++.. |-+...+..+..++...|++++|...|+++.+..|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3455667788888888888888763 456667777788888888888888888888776664
No 184
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.33 E-value=0.049 Score=46.47 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=28.0
Q ss_pred hhcCChHHHHHHHHHhhcCCCC-CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc
Q 041822 78 AAHSNGLKALEFFKFTLQHPHF-TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLL 137 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 137 (500)
...|++.+|++.|+.+...... +-.....-.++.++-+.|+++.|...++++.+..|..+
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 4455566666666655543211 11222344455555555666666666666555555443
No 185
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.32 E-value=0.006 Score=55.33 Aligned_cols=269 Identities=13% Similarity=0.088 Sum_probs=160.8
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHh----HHHHHHHHHcCCChHHHHHHHHHhHhh----CCCCccHHHHHHH
Q 041822 74 GRLFAAHSNGLKALEFFKFTLQHPHFTPTPDA----FEKTLHILARMRYFDQAWELMSHVQRT----HPSLLTLKSMSIM 145 (500)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~l 145 (500)
...+++.|+....+.+|+.+++. | .-|..+ |..+..+|.-.+++++|.+.+..=... +...-...+...+
T Consensus 24 GERLck~gdcraGv~ff~aA~qv-G-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQV-G-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHh-c-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 45678999999999999999986 3 334443 556666677778999998876542211 1011111122334
Q ss_pred HHHHhccccHHHHHHHHHH-HHHHHhccccCCChhhHHHHHHHHHcCCC--------------------HHHHHHHHHHh
Q 041822 146 LSRISKFQSYEETLEAFDR-MEREIFVGIRKFGSEEFNVLLQAFCTQKE--------------------MKEARSVFVKL 204 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--------------------~~~A~~~~~~m 204 (500)
...+--.|.+++|+-...+ +.-....|..-....++-.+...|...|+ ++.|.+.|.+-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 4445556778877654332 11100001011233455567777765543 23344444432
Q ss_pred hh-----C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 205 LS-----R-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMV----LRGFR-PSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 205 ~~-----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
++ + --.-...|..|.+.|.-.|+++.|....+.-. +.|-+ .....+..+.+++.-.|+++.|.+.|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 21 1 11123456777777777889998887765432 22311 12456778888999999999999988865
Q ss_pred HH----cCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 274 ER----VAC-LPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR-----NLKPDIGAYNAMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 274 ~~----~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 343 (500)
.. .|- ......+-+|.+.|.-..++++|+.++.+-... ...-....|.+|..+|...|..++|+.+.+.-
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 32 221 123345556777777777888888887654321 11224677888999999999988888776654
Q ss_pred H
Q 041822 344 E 344 (500)
Q Consensus 344 ~ 344 (500)
.
T Consensus 342 l 342 (639)
T KOG1130|consen 342 L 342 (639)
T ss_pred H
Confidence 3
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.29 E-value=0.067 Score=43.31 Aligned_cols=148 Identities=10% Similarity=0.038 Sum_probs=91.6
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHH
Q 041822 78 AAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEE 157 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 157 (500)
...=+|++.++-....... -|+..--..+...+.+.|+..+|...|++... ++...+...+..+..+....+++..
T Consensus 67 ~q~ldP~R~~Rea~~~~~~---ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 67 QQKLDPERHLREATEELAI---APTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHhcChhHHHHHHHHHHhh---chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHH
Confidence 3344555555444333332 46666666788888888888888888887765 4555566666677777777788888
Q ss_pred HHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 041822 158 TLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEM 233 (500)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 233 (500)
|...++.+-+.... ..++...-.+.+.+...|...+|+.-|+...+- -|+...-......+.+.|+.+++..
T Consensus 143 a~~tLe~l~e~~pa---~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~-ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 143 AQQTLEDLMEYNPA---FRSPDGHLLFARTLAAQGKYADAESAFEVAISY-YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhhcCCc---cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh-CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 88888877665422 223334555667777778888788777777752 2333333333334455565554443
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.28 E-value=0.0054 Score=53.43 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=66.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhh
Q 041822 327 LIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDL 405 (500)
Q Consensus 327 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~ 405 (500)
..+.+++.+|+..|.+.++.... |.+.|..=..+|.+.|+++.|++--+..+.. .|. ..+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 55667777777777777776544 6666666677777777777777776666643 444 5677777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHhHHHH
Q 041822 406 GLNLWGYLIDRGFCPHGHALDL 427 (500)
Q Consensus 406 a~~~~~~~~~~~~~~~~~~~~~ 427 (500)
|.+.|++.++ +.|+-.+|-.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 7777777776 4466555543
No 188
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.28 E-value=0.054 Score=46.25 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 041822 320 YNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK----TRTVVMLMK 395 (500)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~ 395 (500)
+..++.-|-...-..+|...+..+.+. =...--.+..-|.+.|.+..|..-++.+++. -|+ ......++.
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~ 186 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAE 186 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHH
Confidence 333444444444455555544444332 1111112445566666666666666666653 233 233445555
Q ss_pred HHHHcCCHh
Q 041822 396 FFCVNFRVD 404 (500)
Q Consensus 396 ~~~~~~~~~ 404 (500)
++.+.|..+
T Consensus 187 ~y~~l~~~~ 195 (203)
T PF13525_consen 187 AYYKLGLKQ 195 (203)
T ss_dssp HHHHTT-HH
T ss_pred HHHHhCChH
Confidence 555555555
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.27 E-value=0.013 Score=57.40 Aligned_cols=63 Identities=11% Similarity=-0.091 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 282 LQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 282 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444444566666666666655543 35555666666666666666666666555544
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.26 E-value=0.0084 Score=53.06 Aligned_cols=100 Identities=6% Similarity=0.057 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc-cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLL-TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
|...+..+.+.|++++|...|+.+.+..|+.. ...++..+...|...|++++|...|+.+...... .+....++-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--SPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CcchhHHHHHH
Confidence 44444444555666666666666666655432 2334445555566666666666666666554210 12233344444
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhC
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSR 207 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~ 207 (500)
...+...|+.++|..+|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555666666666666665553
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.25 E-value=0.0014 Score=44.04 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=23.7
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 187 AFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (500)
.+.+.|++++|...|+++++..+-+...+..+..++...|++++|..+|++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444333344444444444444444444444444444
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.23 E-value=0.0017 Score=44.05 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=44.2
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041822 189 CTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIR 253 (500)
Q Consensus 189 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 253 (500)
.+.|++++|+++|+++.+..|-+...+..+..++.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 45677788888888877766667777777888888888888888887777766 4554444433
No 193
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.22 E-value=0.0094 Score=47.86 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=41.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL-----RGFRPSVVTY 250 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~ 250 (500)
+...++..+...|++++|..+.+.+....|-|...|..+|.++...|+...|.++|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3455566666677777777777777665566666777777777777777777766666543 2666665543
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.02 Score=50.30 Aligned_cols=114 Identities=11% Similarity=0.117 Sum_probs=76.3
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD---VTAMEMFYHEMVLRGFRPSVVTY 250 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~ 250 (500)
.|-|...|-.|...|...|+++.|..-|.+..+-.++|...+..+..++....+ ..++..+|+++.+.. +-|+.+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 466777888888888888888888888888776555666666666665554332 357777777777663 2245555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041822 251 NIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIH 290 (500)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 290 (500)
..|...+...|++.+|...|+.|.+.. |....+..++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 566667777888888888888887764 33334444443
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.19 E-value=0.016 Score=44.22 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=9.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhh
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
.+...+...|++++|..++++..
T Consensus 43 ~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 43 QLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33334444444444444444443
No 196
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.15 E-value=0.029 Score=49.07 Aligned_cols=97 Identities=10% Similarity=0.100 Sum_probs=65.4
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041822 188 FCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAM 267 (500)
Q Consensus 188 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 267 (500)
+.+.+++.+|+..|.+.++-.+-|.+-|..=..+|++.|.++.|.+-.+..+... +-...+|..|-.+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 4466777777777777777666677777777777777777777776666555542 112456677777777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHH
Q 041822 268 RLFEEMERVACLPSLQTITT 287 (500)
Q Consensus 268 ~~~~~m~~~~~~~~~~~~~~ 287 (500)
+.|++..+.. |+-.+|-.
T Consensus 170 ~aykKaLeld--P~Ne~~K~ 187 (304)
T KOG0553|consen 170 EAYKKALELD--PDNESYKS 187 (304)
T ss_pred HHHHhhhccC--CCcHHHHH
Confidence 7777766643 66555543
No 197
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.14 E-value=0.035 Score=44.52 Aligned_cols=116 Identities=20% Similarity=0.313 Sum_probs=74.4
Q ss_pred hhcCChHHHHHHHHHhhcCC--CCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccH
Q 041822 78 AAHSNGLKALEFFKFTLQHP--HFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSY 155 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (500)
...+++..+.+.++.+.... .+-++... ..-......-++... ......++..+...|++
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~--------~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY--------LDALERLAEALLEAGDY 78 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH--------HHHHHHHHHHHHHTT-H
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH--------HHHHHHHHHHHHhccCH
Confidence 45678888888888877632 12222111 122222233333222 13456677778899999
Q ss_pred HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh------CCCCCHHhHH
Q 041822 156 EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS------RFAPNNKTMN 216 (500)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~------~~~~~~~~~~ 216 (500)
++|....+.+... .|.+...|..+|.+|...|+...|.++|+.+.+ |+.|+..+-.
T Consensus 79 ~~a~~~~~~~l~~-----dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 79 EEALRLLQRALAL-----DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHH-----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 9999999999887 588999999999999999999999999998863 6788776643
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.15 Score=43.84 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRF-APNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
+.++..+.-.|.+.-..+++++..+.. +.++.....|++...+.||.+.|...|++..+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 445555555555555555555555432 34455555555555555555555555554443
No 199
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.23 Score=45.62 Aligned_cols=274 Identities=14% Similarity=0.106 Sum_probs=145.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhc
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISK 151 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (500)
.....+.+..++..|+..+..++.. ++-+..-|..-+..+.-.|++++|..-.+.-.+..+.... .....-.++..
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~--~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k--~~~r~~~c~~a 129 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDM--CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK--GQLREGQCHLA 129 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHh--CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc--cccchhhhhhh
Confidence 3344556677888999999999885 3455556667777777778888877766666554433221 22233334444
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh--CCCCCHHhHHHHH-HHHHhcCCH
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS--RFAPNNKTMNILL-LGFKESGDV 228 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~~l~-~~~~~~~~~ 228 (500)
.+...+|...++.- ..| ....|+..++.... .-+|.-.+|..+- .++.-.|+.
T Consensus 130 ~~~~i~A~~~~~~~-------------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~ 185 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSK-------------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDY 185 (486)
T ss_pred hHHHHHHHHHhhhh-------------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccc
Confidence 44444444443311 000 11122222222221 1123333333332 233344555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH-------------HHHHH
Q 041822 229 TAMEMFYHEMVLRGFRPSVVTYNIRIDG--YCKKGCFGDAMRLFEEMERVACLPSLQTITTL-------------IHGAG 293 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-------------l~~~~ 293 (500)
++|.+.-....+.. ....+..++++ +.-.++.+.|...|++.+..+ |+...-..+ .+-..
T Consensus 186 ~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~f 260 (486)
T KOG0550|consen 186 DEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAF 260 (486)
T ss_pred hhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHh
Confidence 55555544444331 11222222222 223455555555555555443 332211111 12345
Q ss_pred ccCCHHHHHHHHHhchhC---CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHHcCC
Q 041822 294 LVRNIHQARQLFDEMPKR---NLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMF---FGLMKSSG 367 (500)
Q Consensus 294 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~ 367 (500)
+.|++..|.+.|.+.+.. +.+++...|........+.|+.++|+.--+...+. |..-.-+++ .++...++
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHH
Confidence 778888888888887664 34556666777777778888888888877776664 443322222 33445677
Q ss_pred hhHHHHHHHHHHhCC
Q 041822 368 LEGVCKLYDRMIEGK 382 (500)
Q Consensus 368 ~~~a~~~~~~~~~~~ 382 (500)
|++|.+-|++..+..
T Consensus 337 ~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHhhc
Confidence 888888887776543
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.041 Score=48.35 Aligned_cols=125 Identities=9% Similarity=0.044 Sum_probs=90.6
Q ss_pred HHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHH
Q 041822 198 RSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK---GCFGDAMRLFEEME 274 (500)
Q Consensus 198 ~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~ 274 (500)
..-++.-+...|-|...|-.|..+|...|+.+.|..-|....+.- .+|...+..+..++... ....++..+|+++.
T Consensus 142 ~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 142 IARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 333444444567799999999999999999999999999988772 33566666666655433 33567889999998
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHH
Q 041822 275 RVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISS 326 (500)
Q Consensus 275 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 326 (500)
..+ +-|..+...+...+...|++.+|...|+.|.+.. |....+..+|..
T Consensus 221 ~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 221 ALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred hcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 876 3456667777778899999999999999999874 233344444443
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.05 E-value=0.003 Score=43.61 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=51.1
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCcc
Q 041822 74 GRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLT 138 (500)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 138 (500)
..++.+.+++++|++.++.+.... |.+...+.....++...|++++|.+.++...+..|+..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 356778889999999999988863 567777888888889999999999999999888776544
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.00 E-value=0.003 Score=43.02 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=24.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG-DVTAMEMFYHEM 238 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~ 238 (500)
+|..+...+...|++++|+..|++..+-.+.+...|..+..++.+.| ++++|.+.++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 34444444444444444444444444322333444444444444444 344444444433
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.99 E-value=0.0027 Score=43.24 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCC-ChHHHHHHHHHhHhh
Q 041822 69 VENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMR-YFDQAWELMSHVQRT 132 (500)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 132 (500)
++..+...+...|++++|+..|+.+++.+ +.+...+..+..++...| ++++|++.++...+.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34444444455555555555555555432 233444444555555555 455555555544443
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.98 E-value=0.019 Score=50.89 Aligned_cols=97 Identities=9% Similarity=0.065 Sum_probs=58.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN---NKTMNILLLGFKESGDVTAMEMFYHEMVLRG--FRPSVVTYNIRI 254 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li 254 (500)
.|...+..+.+.|++++|...|+.+.+..|-+ ...+..+..+|...|+++.|...|..+.+.- -......+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 35555555555677777777777777644333 2456666677777777777777777766541 111233344445
Q ss_pred HHHHhcCChhHHHHHHHHHHHc
Q 041822 255 DGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
..+...|+.++|.++|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5566667777777777766654
No 205
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.97 E-value=0.32 Score=45.28 Aligned_cols=117 Identities=14% Similarity=0.206 Sum_probs=70.5
Q ss_pred HcCC-hhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHc---CCHhhHHHHHHHHHHCCCCCC----HhHHHHHHHH
Q 041822 364 KSSG-LEGVCKLYDRMIEGKFVPKTR----TVVMLMKFFCVN---FRVDLGLNLWGYLIDRGFCPH----GHALDLLVTG 431 (500)
Q Consensus 364 ~~g~-~~~a~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~ 431 (500)
+.|. -++|+++++.+.+-. .-|.. ++..+=.+|... ..+.+-..+-+.+.+.|++|- ...-|.+.++
T Consensus 391 ~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 3444 677888887776531 12222 222222333322 334444444444556677763 3344455443
Q ss_pred --HhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHH
Q 041822 432 --LCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMI 483 (500)
Q Consensus 432 --~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 483 (500)
+...|++.++.-.-.-.. .+.|++.+|..+.-++....++++|..+++++
T Consensus 470 EyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 456888888765544443 46789999998888888888999998887765
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.24 Score=42.60 Aligned_cols=131 Identities=14% Similarity=0.048 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH----
Q 041822 215 MNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIH---- 290 (500)
Q Consensus 215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~---- 290 (500)
.+.++....-.|.+.-....+++.++...+-++.....|++.-.+.|+.+.|...|++..+..-+.|..+.+.++.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455555555566666666666666654445556666666666666666666666666554333333333333221
Q ss_pred -HHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 291 -GAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 291 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
.|.-.+++-.|...+.++...+ ..|+...|.-.-+..-.|+..+|.+..+.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2333445555555555555443 113333332222223335555555555555554
No 207
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.75 E-value=0.027 Score=43.42 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=20.4
Q ss_pred CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHH
Q 041822 418 FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLV-RRRQVSEASYRMLQ 464 (500)
Q Consensus 418 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~ 464 (500)
..|+..+..+++.+|+..|++..|+++++...+ -++..+..+|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 334444444444444444444444444444433 23333444443333
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.75 E-value=0.014 Score=53.02 Aligned_cols=132 Identities=11% Similarity=0.002 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHH----hCCC-CCCH
Q 041822 318 GAYNAMISSLIRCRDLNAAMELMDEM----EEKRIG-HDNVTYHTMFFGLMKSSGLEGVCKLYDRMI----EGKF-VPKT 387 (500)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~-~p~~ 387 (500)
..|..|.+.|.-.|+++.|+..-+.- ++.|-+ .....+..+..++.-.|+++.|.+.|+... +.|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34555666666667777766554321 111211 122345556666666677777777666532 2221 1123
Q ss_pred HHHHHHHHHHHHcCCHhhHHHHHHHHHH----C-CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041822 388 RTVVMLMKFFCVNFRVDLGLNLWGYLID----R-GFCPHGHALDLLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 388 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
.+..+|...|.-..+++.|+.++.+-+. . ...-....+-+|..+|...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3344556666666666777666654332 1 111234456677777777777777776655543
No 209
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.74 E-value=0.49 Score=44.08 Aligned_cols=145 Identities=11% Similarity=0.138 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 041822 318 GAYNAMISSLIRCRDLNAAMELMDEMEEKR-IGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTV-VMLMK 395 (500)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~ll~ 395 (500)
.+|...++...+..-++.|..+|-+..+.| +.+++..+++++..++. |+..-|.++|+--... .||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 457778888888888999999999999888 67788899999988765 6888899999875543 4554443 35566
Q ss_pred HHHHcCCHhhHHHHHHHHHHCCCCCC--HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041822 396 FFCVNFRVDLGLNLWGYLIDRGFCPH--GHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLV 468 (500)
Q Consensus 396 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 468 (500)
-+...++-+.|..+|+..++. +..+ ..+|..+|.-=.+-|+...+..+=++|.+. -|...+......-|.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 667789999999999976653 1222 468888998888889998888888887643 345544444444443
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.68 E-value=0.12 Score=50.03 Aligned_cols=251 Identities=12% Similarity=0.125 Sum_probs=139.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCC
Q 041822 211 NNKTMNILLLGFKESGDVTAMEMF---------YHEMVLRGFRPSVVTYNIRIDGYCKKGCF--GDAMRLFEEMERVACL 279 (500)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~a~~~---------~~~~~~~g~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~ 279 (500)
....+.+=+..|...|.+++|.++ |+.+... ..+...++..=++|.+..+. -+.+.-+++|+++|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 334445555666777777766554 2222222 12344556666777766553 3445556778888877
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH---------HHHC-CCC
Q 041822 280 PSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDE---------MEEK-RIG 349 (500)
Q Consensus 280 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---------~~~~-~~~ 349 (500)
|+.... ...++-.|++.+|-++|.+--.. +..+.+|.....+|.|.+++.. |+++ ...
T Consensus 633 P~~iLl---A~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA 700 (1081)
T KOG1538|consen 633 PNDLLL---ADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA 700 (1081)
T ss_pred chHHHH---HHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Confidence 877543 34566778888888888654322 1223344444444444444321 1111 000
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHH------HHhCCCC---CCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCC
Q 041822 350 HDNVTYHTMFFGLMKSSGLEGVCKLYDR------MIEGKFV---PKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420 (500)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~a~~~~~~------~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (500)
-+..-=.+....+...|+.++|..+.-+ +.+-+-+ .+..+...+...+.+...+..|.++|..|-+.
T Consensus 701 r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---- 776 (1081)
T KOG1538|consen 701 RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---- 776 (1081)
T ss_pred hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----
Confidence 0000011234455566777777654321 1121112 22344444444555667777888888777542
Q ss_pred CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 421 HGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEA-----------SYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
..+++.....++|.+|+.+-++..+ +.||.. -|.-.-.+|.++|+..+|..+.+.+...
T Consensus 777 -----ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 777 -----KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred -----HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2466677888999999988877653 233321 2445567788888888888887777544
No 211
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.67 E-value=0.062 Score=51.51 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=106.9
Q ss_pred HhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHH
Q 041822 77 FAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYE 156 (500)
Q Consensus 77 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (500)
..-.++++++++....-.-.+.+ +....+.+++.+-+.|..+.|+++.+.-. .-+....+.|+.+
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHH
Confidence 34468888887776522211122 25668899999999999999998864322 1234456889999
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYH 236 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 236 (500)
.|.++.++. .+...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+
T Consensus 336 ~A~~~a~~~----------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 336 IALEIAKEL----------DDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHCCCC----------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHhc----------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHH
Confidence 998876544 3566899999999999999999999999875 7778888888999988888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 237 EMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 237 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
.....| -+|....++.-.|+.++..+++.+-
T Consensus 398 ~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 398 IAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777765 2555566666678888888777653
No 212
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.61 E-value=0.55 Score=42.99 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=80.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 284 TITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLM 363 (500)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 363 (500)
+.+.-+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-.++-.. + -+++.|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence 44555666777888888888866652 46888899999999999999887775432 1 25688889999999
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHH
Q 041822 364 KSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWG 411 (500)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 411 (500)
+.|+..+|..++.++ .+ ..-+..|.+.|++.+|.+.-.
T Consensus 249 ~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHH
Confidence 999999998888762 22 335666788888888876543
No 213
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.61 E-value=0.045 Score=42.21 Aligned_cols=50 Identities=8% Similarity=-0.045 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 041822 348 IGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE-GKFVPKTRTVVMLMKFF 397 (500)
Q Consensus 348 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~ 397 (500)
..|+..+..+++.+|+..|++..|+++.+...+ -++..+..++..|++-+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 445555555555555555555555555555442 23444455555555544
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.61 E-value=0.56 Score=43.51 Aligned_cols=31 Identities=10% Similarity=0.043 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 351 DNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
+-..+.+++.++.-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3344455555666666666666666666544
No 215
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.61 Score=42.99 Aligned_cols=255 Identities=9% Similarity=0.003 Sum_probs=146.5
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV 228 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~ 228 (500)
+.+...+.+|+..+....+. .+.+..-|..-...+...|++++|.--.+.-.+--+-......-.-+++...++.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~-----~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDM-----CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHh-----CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHH
Confidence 44556666777766666665 3555666666666666666666666555443321011111222222233333333
Q ss_pred HHHHHHHH---------------HHHHCC-CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041822 229 TAMEMFYH---------------EMVLRG-FRPSVVTYNIR-IDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHG 291 (500)
Q Consensus 229 ~~a~~~~~---------------~~~~~g-~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 291 (500)
.+|.+.++ ...... -+|...+|..+ ..++...|++++|...--...+.+ ....+...+++
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg 210 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRG 210 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcc
Confidence 33332222 111111 12333444433 235567799999988877777654 22334444443
Q ss_pred --HHccCCHHHHHHHHHhchhCCCCCCHhh-------------HHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHH
Q 041822 292 --AGLVRNIHQARQLFDEMPKRNLKPDIGA-------------YNAMISSLIRCRDLNAAMELMDEMEEK---RIGHDNV 353 (500)
Q Consensus 292 --~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ 353 (500)
+.-.++.+.+...|++.+..+ |+-.. +..=.+-..+.|.+..|.+.|.+.... +..|+..
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 445678899999999888764 33222 222233456788999999999988765 3455566
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHhhHHHHHHHHHHCC
Q 041822 354 TYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRT---VVMLMKFFCVNFRVDLGLNLWGYLIDRG 417 (500)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 417 (500)
.|.....+..+.|+..+|+.--++..+ .|..- |..-..++...+++++|.+-++...+..
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 676667777888999998887776653 33332 2222334455688899988888887653
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.44 E-value=0.021 Score=39.29 Aligned_cols=50 Identities=12% Similarity=-0.019 Sum_probs=19.1
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 190 TQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239 (500)
Q Consensus 190 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (500)
+.+++++|.++++.+.+-.|.+...+.....++.+.|++++|...++...
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33333333333333333223333333333333333333333333333333
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.38 E-value=0.83 Score=42.40 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=55.9
Q ss_pred CCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc---CCCHHHHHHHHHHhh-hCCC
Q 041822 134 PSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT---QKEMKEARSVFVKLL-SRFA 209 (500)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~A~~~~~~m~-~~~~ 209 (500)
+...+..+...++-.|....+++...++++.+....... ......+-....-++-+ .|+.++|.+++..++ +...
T Consensus 136 ~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~ 214 (374)
T PF13281_consen 136 PELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN 214 (374)
T ss_pred HhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC
Confidence 445555666667777888888888888888886541100 01122222233444555 788888888888854 4566
Q ss_pred CCHHhHHHHHHHHH
Q 041822 210 PNNKTMNILLLGFK 223 (500)
Q Consensus 210 ~~~~~~~~l~~~~~ 223 (500)
++..+|..+...|-
T Consensus 215 ~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 215 PDPDTLGLLGRIYK 228 (374)
T ss_pred CChHHHHHHHHHHH
Confidence 77788877777664
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=1.4 Score=44.03 Aligned_cols=340 Identities=11% Similarity=0.060 Sum_probs=172.6
Q ss_pred CCCCCHHhH-----HHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc
Q 041822 98 HFTPTPDAF-----EKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG 172 (500)
Q Consensus 98 ~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 172 (500)
|++.+..-| ..+++-+...+.+..|+++-+.+...... ....+......+.+..+ ..-..+++.+.+.--.
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~--~~~Vl~~Wa~~kI~~~d-~~d~~vld~I~~kls~- 502 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ--GDRVLLEWARRKIKQSD-KMDEEVLDKIDEKLSA- 502 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc--ccHHHHHHHHHHHhccC-ccchHHHHHHHHHhcc-
Confidence 666666655 35677778889999999998887653222 13455555555555432 1223344444443211
Q ss_pred ccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-C--C--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 041822 173 IRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-R--F--APNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSV 247 (500)
Q Consensus 173 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~--~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 247 (500)
.-....+|..+.+-....|+.+.|..+++.=.. + + --+..-+...+.-+.+.|+.+-...++-.+.+.- +.
T Consensus 503 -~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~ 578 (829)
T KOG2280|consen 503 -KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NR 578 (829)
T ss_pred -cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HH
Confidence 113556788888888899999999988876542 1 1 1233445666677777788777777766665431 12
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc-----hhCCCCCCHhhHHH
Q 041822 248 VTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEM-----PKRNLKPDIGAYNA 322 (500)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~ 322 (500)
..+...+ .+...|..+|.+..+.. |..+ +-+.|-...+....-.+.-+- ...|..|+. ..
T Consensus 579 s~l~~~l------~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~ 643 (829)
T KOG2280|consen 579 SSLFMTL------RNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KT 643 (829)
T ss_pred HHHHHHH------HhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HH
Confidence 2222111 23344555555544321 1111 111122222221111111100 011222222 22
Q ss_pred HHHHHHhcCC----------HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 041822 323 MISSLIRCRD----------LNAAMELMDEMEEK-RIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVV 391 (500)
Q Consensus 323 li~~~~~~g~----------~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 391 (500)
....+.+... ..+-+.+.+.+..+ |......+.+--+.-+...|+-.+|.++-.+.+ -||...|.
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~w 719 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWW 719 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHH
Confidence 2223333222 11122222222222 222233444455556666777777777666554 56777777
Q ss_pred HHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 041822 392 MLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQAN 471 (500)
Q Consensus 392 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 471 (500)
.=+.+++..+++++-+++-+... .+.-|.-.+.+|.+.|+.+||.+++.+.. |.. -...+|.+.|
T Consensus 720 Lk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~--~l~-------ekv~ay~~~~ 784 (829)
T KOG2280|consen 720 LKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG--GLQ-------EKVKAYLRVG 784 (829)
T ss_pred HHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC--ChH-------HHHHHHHHhc
Confidence 66777777777765444433322 12345556677777777777777776552 111 2344555556
Q ss_pred chhHHHHH
Q 041822 472 ANEKLEDL 479 (500)
Q Consensus 472 ~~~~~~~~ 479 (500)
++.+|.++
T Consensus 785 ~~~eAad~ 792 (829)
T KOG2280|consen 785 DVKEAADL 792 (829)
T ss_pred cHHHHHHH
Confidence 55555544
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.30 E-value=0.08 Score=45.97 Aligned_cols=104 Identities=12% Similarity=0.165 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCC-ccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSL-LTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
|+..+.. .+.|++..|...|....+..|+. .+..++-.|..++...|++++|..+|..+.+.... .+.-++++--|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~--s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK--SPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC--CCCChHHHHHH
Confidence 4444443 34555666666666666655443 23344455666666666666666666666554311 23334555556
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCH
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRFAPNN 212 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~~~~~ 212 (500)
..+..+.|+.++|...|+++.+.+|-+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 6666666666666666666665544433
No 220
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.58 Score=39.91 Aligned_cols=55 Identities=9% Similarity=0.116 Sum_probs=30.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhchhCC---CCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041822 285 ITTLIHGAGLVRNIHQARQLFDEMPKRN---LKPDIGAYNAMISSLIRCRDLNAAMELM 340 (500)
Q Consensus 285 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~ 340 (500)
|...|-.+....++..|.+.++.-.+.+ -.-+..+...|+.+| ..|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 4444445555566666666666633322 223455666666665 446666655554
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.30 E-value=0.29 Score=47.74 Aligned_cols=164 Identities=11% Similarity=0.025 Sum_probs=90.3
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHH------HHHHHHHHh----ccccHHHHHHHHHHHHHHHhcccc
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKS------MSIMLSRIS----KFQSYEETLEAFDRMEREIFVGIR 174 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~ 174 (500)
.+..+++..+=.||-+.+++.+.+..+. ++....-+ |...+..+. .....+.|.++++.+... .
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-----y 263 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-----Y 263 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-----C
Confidence 3445666666666767776666665542 22222211 111122222 245667777777777665 2
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh--C--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041822 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS--R--FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY 250 (500)
Q Consensus 175 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 250 (500)
|.+..-.-.-.+.+...|++++|++.|+.... . -+.....+--+.-.+.-..+|++|...|..+.+..- =+..+|
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y 342 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFY 342 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHH
Confidence 33333333444556667777777777776542 1 122334455556667777888888888888876521 123333
Q ss_pred HHHHH-HHHhcCCh-------hHHHHHHHHHHH
Q 041822 251 NIRID-GYCKKGCF-------GDAMRLFEEMER 275 (500)
Q Consensus 251 ~~li~-~~~~~g~~-------~~a~~~~~~m~~ 275 (500)
.-+.. ++...|+. ++|.++|.+...
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33332 23345666 788888877643
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.29 E-value=0.45 Score=46.44 Aligned_cols=151 Identities=11% Similarity=0.057 Sum_probs=85.7
Q ss_pred HHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc--ccCCChhhHHHHHHHHHc----CCCHH
Q 041822 122 AWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG--IRKFGSEEFNVLLQAFCT----QKEMK 195 (500)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~~~----~~~~~ 195 (500)
..-+|.-+...-| ..+..+++..+=.|+-+.+++.+.+..+..... ....-.-.|+.++..++. ....+
T Consensus 176 G~G~f~L~lSlLP-----p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 176 GFGLFNLVLSLLP-----PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHhCC-----HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 3455666665433 246778888888899999999998765432000 000011134444444443 34567
Q ss_pred HHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041822 196 EARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRG---FRPSVVTYNIRIDGYCKKGCFGDAMRLFEE 272 (500)
Q Consensus 196 ~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 272 (500)
.|.++++.+.++.|-+..-.-.-.+.+...|+++.|.+.|+...... -+.....+--+.-.+.-.++|++|.+.|..
T Consensus 251 ~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 251 EAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 77777777776655444444444556666777777777777654320 011222233344445556777777777777
Q ss_pred HHHcC
Q 041822 273 MERVA 277 (500)
Q Consensus 273 m~~~~ 277 (500)
+.+..
T Consensus 331 L~~~s 335 (468)
T PF10300_consen 331 LLKES 335 (468)
T ss_pred HHhcc
Confidence 76643
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.28 E-value=0.14 Score=48.02 Aligned_cols=61 Identities=20% Similarity=0.118 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCH----HhHHHHHHHHHcCCChHHHHHHHHHhHh
Q 041822 68 LVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTP----DAFEKTLHILARMRYFDQAWELMSHVQR 131 (500)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 131 (500)
..++-+...+...|++++|+..|+.+++.. |+. .+|..+..+|...|++++|++.+++..+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444555555555555544431 221 1244444555555555555555544444
No 224
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.25 E-value=0.076 Score=46.00 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=60.9
Q ss_pred CHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------ChhHHHHH
Q 041822 211 NNKTMNILLLGFKE-----SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG----------------CFGDAMRL 269 (500)
Q Consensus 211 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----------------~~~~a~~~ 269 (500)
|..+|-..+..+.. .+.++-....+..|.+.|+.-|..+|+.|++.+-+.. +-+=++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44444444444432 2344555555566666666666666666666554321 12346788
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHhchh
Q 041822 270 FEEMERVACLPSLQTITTLIHGAGLVRN-IHQARQLFDEMPK 310 (500)
Q Consensus 270 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~ 310 (500)
+++|...|+-||..+-..+++++.+.+- ..+..++.-.|.+
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 8888888888888888888888887776 3444555444433
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.11 E-value=0.016 Score=40.47 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=12.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhh
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
+|+.+...|...|++++|++.|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444445555555555555544443
No 226
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.08 E-value=0.12 Score=49.70 Aligned_cols=131 Identities=9% Similarity=0.009 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
.-.+.++..+.+.|..+.|+++-++-. .-.....+.|+++.|.++.++ ..+...|..|.+...
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~-----------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD-----------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH-----------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH-----------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 345666666666666666666533321 223444556666666654322 125556666666666
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 041822 259 KKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAME 338 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 338 (500)
+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+.....| -++....++.-.|++++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665443 3444445556666666665555555544 13444444555566666665
Q ss_pred HHH
Q 041822 339 LMD 341 (500)
Q Consensus 339 ~~~ 341 (500)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 227
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.06 E-value=0.85 Score=39.44 Aligned_cols=75 Identities=15% Similarity=0.053 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCC-CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHF-TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTL 139 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 139 (500)
.|...+++..... .+.|++++|.+.|+.+..+..+ +-...+...++-++-+.++++.|+..+++..+..|..++.
T Consensus 32 ~p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 32 LPASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 3555555554443 3566777777777766654322 2233344455555566677777777777776666665553
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.05 E-value=1.3 Score=41.44 Aligned_cols=426 Identities=11% Similarity=0.090 Sum_probs=229.1
Q ss_pred CCCCCchhhhhhCCCCCC-CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHH
Q 041822 46 PDQPLHPTLLQHLPQTTP-LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWE 124 (500)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 124 (500)
|+..++....+....... +++-..|-.|++.+..++..++..+.++++.. .+|--+.+|...++.-....++.....
T Consensus 20 ~~~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~--pfp~~~~aw~ly~s~ELA~~df~svE~ 97 (660)
T COG5107 20 PSDNIHGDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSS--PFPIMEHAWRLYMSGELARKDFRSVES 97 (660)
T ss_pred cccCCCchHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC--CCccccHHHHHHhcchhhhhhHHHHHH
Confidence 444455444444332222 23344456777888888899888899998876 355566777777777777788999999
Q ss_pred HHHHhHhhCCCCccHHHHHHHHHHHhccccH------HHHHHHHHHHHHHHhccccCCChhhHHHHHHHH---HcCCCHH
Q 041822 125 LMSHVQRTHPSLLTLKSMSIMLSRISKFQSY------EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAF---CTQKEMK 195 (500)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~ 195 (500)
+|.+.... ..+...|...+....+.+.. ....+.|+-... ..+..+.+...|+..+..+ -..|.|+
T Consensus 98 lf~rCL~k---~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~--~~~~e~~s~~~W~ey~~fle~~~~~~kwE 172 (660)
T COG5107 98 LFGRCLKK---SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLG--CAIFEPQSENYWDEYGLFLEYIEELGKWE 172 (660)
T ss_pred HHHHHHhh---hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHh--cccccccccchHHHHHHHHHhccccccHH
Confidence 99888774 23445565555543333211 112233333332 2232345555666655443 2334444
Q ss_pred ------HHHHHHHHhhhCCCCCH-------HhHHHHHHHHHh---cCC----HHHHHHHHHHHHHC--CCC----CCHHH
Q 041822 196 ------EARSVFVKLLSRFAPNN-------KTMNILLLGFKE---SGD----VTAMEMFYHEMVLR--GFR----PSVVT 249 (500)
Q Consensus 196 ------~A~~~~~~m~~~~~~~~-------~~~~~l~~~~~~---~~~----~~~a~~~~~~~~~~--g~~----~~~~~ 249 (500)
.....+.+|+.----+. ..|..=++-... .|+ +-.|.+.+++.... |+. .+..+
T Consensus 173 eQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt 252 (660)
T COG5107 173 EQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRT 252 (660)
T ss_pred HHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhh
Confidence 44455555553100011 111111111110 011 23455555555432 332 12222
Q ss_pred HHH-----------HHHHHHhc-----CC-hh-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 250 YNI-----------RIDGYCKK-----GC-FG-DAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 250 ~~~-----------li~~~~~~-----g~-~~-~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
+|. .|+-=... |+ .. ...-++++.... +.-....|----..+...++-+.|.+....-.+.
T Consensus 253 ~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~ 331 (660)
T COG5107 253 ANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM 331 (660)
T ss_pred hccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC
Confidence 222 22211110 11 11 111122222221 1223444444444556677777777776654443
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH--------------CCC---------------CCCHHHHHHHHHHH
Q 041822 312 NLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEE--------------KRI---------------GHDNVTYHTMFFGL 362 (500)
Q Consensus 312 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~li~~~ 362 (500)
.|+...+ +-..|--..+.+.....|+...+ .+. ..-...|.+.+.+.
T Consensus 332 --spsL~~~--lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v 407 (660)
T COG5107 332 --SPSLTMF--LSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYV 407 (660)
T ss_pred --CCchhee--HHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHH
Confidence 2221111 11111122222222222211100 001 01245677778888
Q ss_pred HHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhH-HHHHHHHHhcCCCHHH
Q 041822 363 MKSSGLEGVCKLYDRMIEGK-FVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHA-LDLLVTGLCSRGRWEE 440 (500)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~ 440 (500)
.+....+.|..+|-+..+.+ +.++...+++++.-++ .|+...|..+|+.-...- ||... .+-.+.-+.+-++-+.
T Consensus 408 ~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~fLi~inde~n 484 (660)
T COG5107 408 LRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLLFLIRINDEEN 484 (660)
T ss_pred HHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCcHHH
Confidence 88888999999999999988 6677888888887665 578888999998766642 34333 3456666778899999
Q ss_pred HHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCchhHHHHHHHHHHHhh
Q 041822 441 AFECSKQMLVRRRQVS--EASYRMLQRYLVQANANEKLEDLDRMIKNLQ 487 (500)
Q Consensus 441 A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 487 (500)
|..+|+...++ +.-+ ...|..++..=.+-|+...+..+-+.+....
T Consensus 485 araLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 485 ARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 99999976643 1122 4678889998899999988888777776553
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.04 E-value=0.022 Score=39.79 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=33.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 213 KTMNILLLGFKESGDVTAMEMFYHEMVLR----GF-RPS-VVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
.+|+.+...|...|++++|...|++..+. |- .|+ ..+++.+..+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566666666666666666666655533 11 111 3345555566666666666666665543
No 230
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.03 E-value=0.47 Score=36.20 Aligned_cols=64 Identities=11% Similarity=0.070 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCC
Q 041822 354 TYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418 (500)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 418 (500)
.....+..+...|.-+...+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555555555555555555554322 45555555555666666666666666666555553
No 231
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.03 E-value=0.89 Score=39.35 Aligned_cols=186 Identities=13% Similarity=0.128 Sum_probs=106.4
Q ss_pred CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc-cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChh
Q 041822 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLL-TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE 179 (500)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 179 (500)
|-...|+. +..-...|++++|.+.|+.+...+|..+ +..+...++-++-+.++++.|+..+++....-. ..|| .
T Consensus 33 p~~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP---~~~n-~ 107 (254)
T COG4105 33 PASELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP---THPN-A 107 (254)
T ss_pred CHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC---CCCC-h
Confidence 33344444 4445688999999999999999876543 556777788888999999999999999988742 1222 3
Q ss_pred hHHHHHHHHHcC-------CCHHH---HHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 041822 180 EFNVLLQAFCTQ-------KEMKE---ARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVT 249 (500)
Q Consensus 180 ~~~~ll~~~~~~-------~~~~~---A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 249 (500)
.|..-|.+++.- ++... |..-|+..+++.|-+..+ ..|..-...+... =...
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya--------------~dA~~~i~~~~d~----LA~~ 169 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA--------------PDAKARIVKLNDA----LAGH 169 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch--------------hhHHHHHHHHHHH----HHHH
Confidence 354455554422 33333 444444444444433322 1222211111111 0001
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 250 YNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL---QTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
=..+.+.|.+.|.+..|..-+++|.+. .+-+. ...-.+..+|...|-.++|.+.-.-+..
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 122445667777777777777777765 22222 2344556667777777776665544443
No 232
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.99 E-value=1.2 Score=40.41 Aligned_cols=131 Identities=14% Similarity=0.170 Sum_probs=74.4
Q ss_pred HHHHHHHHHhchhCCCCCCHhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCC-
Q 041822 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIR--CR----DLNAAMELMDEMEEKRI---GHDNVTYHTMFFGLMKSSG- 367 (500)
Q Consensus 298 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~- 367 (500)
+++...+++.|.+.|..-+..+|-+....... .. ...+|..+|+.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566677888888877776666554333333 11 35667788888887632 2344455555433 2233
Q ss_pred ---hhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCC--HhhHHHHHHHHHHCCCCCCHhHHHHHHH
Q 041822 368 ---LEGVCKLYDRMIEGKFVPKT--RTVVMLMKFFCVNFR--VDLGLNLWGYLIDRGFCPHGHALDLLVT 430 (500)
Q Consensus 368 ---~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~ 430 (500)
.+.+..+|+.+.+.|...+. .....++..+..... ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 34556677777776655542 233333333222211 4567777788888887777777765543
No 233
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.53 Score=37.82 Aligned_cols=123 Identities=12% Similarity=0.099 Sum_probs=51.8
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC-CCCCHH-hHHHH--HHHHHhc
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-FAPNNK-TMNIL--LLGFKES 225 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~~~~-~~~~l--~~~~~~~ 225 (500)
++.+..++|+..|..+.+.+.. ...+-.-........+.|+...|...|+++-.. -.|-.. -..-| ...+...
T Consensus 69 A~~~k~d~Alaaf~~lektg~g---~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYG---SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcc
Confidence 3444455555555555444321 112222333344444555555555555555431 111111 11111 1122344
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 226 GDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
|.++.+..-.+-+...|-+.-...-..|.-+-.+.|++.+|.++|.++..
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555555444444433333333334444444555555555555555544
No 234
>PRK15331 chaperone protein SicA; Provisional
Probab=95.79 E-value=0.21 Score=40.01 Aligned_cols=91 Identities=8% Similarity=-0.094 Sum_probs=59.5
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHH
Q 041822 109 TLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAF 188 (500)
Q Consensus 109 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 188 (500)
...-+-..|++++|..+|+-+...++.. ...+..+..++-..+++++|+..|...-.. .+.|...+-....++
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n--~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-----~~~dp~p~f~agqC~ 115 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYN--PDYTMGLAAVCQLKKQFQKACDLYAVAFTL-----LKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccCCCCccchHHHHH
Confidence 3334456677777777777777654443 345666777777777777777777665444 234555566667777
Q ss_pred HcCCCHHHHHHHHHHhhh
Q 041822 189 CTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 189 ~~~~~~~~A~~~~~~m~~ 206 (500)
...|+.+.|...|....+
T Consensus 116 l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 116 LLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 777777777777777664
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.79 E-value=0.32 Score=45.83 Aligned_cols=67 Identities=10% Similarity=0.006 Sum_probs=40.9
Q ss_pred CCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCCh---hhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 135 SLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS---EEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 135 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
+..+...+..+..+|.+.|++++|+..|++..+.. |.+. .+|..+..+|...|+.++|++.+++..+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455666666666666666666666666665542 2233 2366666666666666666666666654
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.72 E-value=0.35 Score=37.77 Aligned_cols=75 Identities=12% Similarity=0.008 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCC-CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFT-PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTL 139 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 139 (500)
.|+..+++.-.. ..+.|++.+|.+.|+.+..+..+. -...+...++.++-+.|++++|...+++..+.+|..+..
T Consensus 8 ~~~~~ly~~a~~-~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 8 KSPQELYQEAQE-ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 455556655444 356788888888888888764222 233456677888888888888888888888888776653
No 237
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.70 E-value=1.5 Score=39.52 Aligned_cols=125 Identities=13% Similarity=0.158 Sum_probs=63.4
Q ss_pred hhcCChHHHHHHHHHhhcCC-CCCCCHH-----hHHHHHHHHHcCC-ChHHHHHHHHHhHhh----C---CCC-----cc
Q 041822 78 AAHSNGLKALEFFKFTLQHP-HFTPTPD-----AFEKTLHILARMR-YFDQAWELMSHVQRT----H---PSL-----LT 138 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~-----~~~~l~~~~~~~g-~~~~a~~~~~~~~~~----~---~~~-----~~ 138 (500)
.+.|+.+.|.-++.++.... ...|+.. .+-.+.......+ +++.|..++++..+. . ... ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788999999998887643 2233322 1122222233445 888887777766543 1 111 11
Q ss_pred HHHHHHHHHHHhccccHHH---HHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 041822 139 LKSMSIMLSRISKFQSYEE---TLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR 207 (500)
Q Consensus 139 ~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 207 (500)
..++..++.+|...+..+. |..+++.+... .+....++-.-++.+.+.++.+.+.+++.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-----~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-----YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-----CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 2334445555555544333 33333333332 2223444444555555556666666666666653
No 238
>PRK15331 chaperone protein SicA; Provisional
Probab=95.65 E-value=0.18 Score=40.36 Aligned_cols=87 Identities=6% Similarity=-0.043 Sum_probs=54.6
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV 228 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~ 228 (500)
+-..|++++|..+|+-+... .+.+..-|..|..++-..+++++|...|.....-.+-|...+.....++...|+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~-----d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIY-----DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 44567777777777766654 2445555666666666667777777777665542233444455566666667777
Q ss_pred HHHHHHHHHHHH
Q 041822 229 TAMEMFYHEMVL 240 (500)
Q Consensus 229 ~~a~~~~~~~~~ 240 (500)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 777776666655
No 239
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.65 E-value=2.5 Score=41.56 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=42.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHh-----------hHHHH
Q 041822 255 DGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIG-----------AYNAM 323 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l 323 (500)
..+.+...+.-|-++|..|-+. ..+++.....+++++|..+-+...+. .||+. -|...
T Consensus 755 ~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEA 823 (1081)
T KOG1538|consen 755 TYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEA 823 (1081)
T ss_pred HHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHH
Confidence 3333445555566666555432 23444455556666666655554442 22221 13334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 041822 324 ISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
-.+|.+.|+..+|..+++++...
T Consensus 824 qkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 824 QKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHhcchHHHHHHHHHhhhh
Confidence 45666777777777777766543
No 240
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.59 E-value=0.75 Score=35.15 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=75.0
Q ss_pred ccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 041822 294 LVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCK 373 (500)
Q Consensus 294 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 373 (500)
-.|..++..++..+..... +..-+|.+|--....-+-+-..++++.+-+. .|... .|+......
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~----------C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISK----------CGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-----------S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCchh----------hcchHHHHH
Confidence 3466777777776666542 4455555554444444444444444433321 22221 233333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 041822 374 LYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRR 453 (500)
Q Consensus 374 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 453 (500)
.+-.+ ..+...+...+......|+-++-.++...+.+.+ .+++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33211 1233445566777788888888888888887633 57777777888999999999999999999888876
Q ss_pred C
Q 041822 454 Q 454 (500)
Q Consensus 454 ~ 454 (500)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.47 E-value=0.16 Score=38.51 Aligned_cols=90 Identities=17% Similarity=0.082 Sum_probs=65.6
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh--CCCCC--HHhHHHHHHHHH
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS--RFAPN--NKTMNILLLGFK 223 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~~~~~--~~~~~~l~~~~~ 223 (500)
+.+..|+.+.|++.|.+.... .|.+..+||.-..++--.|+.++|++-+++.++ |.+.. -..|..-...|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 466778888888888887765 577888888888888888888888888888876 32211 123444445566
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 041822 224 ESGDVTAMEMFYHEMVLRG 242 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g 242 (500)
..|+.+.|..=|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 7788888888888777776
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=1.4 Score=37.63 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 041822 319 AYNAMISSLIRCRDLNAAMELMDEMEEKR---IGHDNVTYHTMFFGLMKSSGLEGVCKLY 375 (500)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~ 375 (500)
.|...|-.|.-..++..|...++.-.+.+ -.-+..+...|+.+| ..|+.+++.++.
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 45566666777778888888888744432 122556677777777 456777666554
No 243
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.35 E-value=1.1 Score=35.52 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=16.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
+..+.+.+.......+++.+...|. .+...++.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 3333333444444444444444331 233344444444443
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.30 E-value=0.47 Score=41.35 Aligned_cols=98 Identities=11% Similarity=0.138 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC---HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccH-HHHH
Q 041822 68 LVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPT---PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTL-KSMS 143 (500)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ 143 (500)
-.|+.-..+ ...|++..|...|...++. +|-+ +..+--+..++...|++++|..+|..+.+..|..+.. ..+.
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 366666565 4678899999999988874 3433 3456678999999999999999999999988777654 6788
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHH
Q 041822 144 IMLSRISKFQSYEETLEAFDRMERE 168 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~ 168 (500)
.+..+..+.|+.++|..+|+++.++
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 8888899999999999999999887
No 245
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.27 E-value=0.15 Score=44.19 Aligned_cols=105 Identities=10% Similarity=0.072 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHh
Q 041822 244 RPSVVTYNIRIDGYCKK-----GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIG 318 (500)
Q Consensus 244 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 318 (500)
+-|..+|...+..+... +.++-.-..++.|.+.|+.-|..+|+.|++.+-+..- .|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-
Confidence 44777777777766543 5556666667778888888888888888776543221 1111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 041822 319 AYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG 367 (500)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 367 (500)
++....-.|- .+-+-++.++++|...|+.||..+-..++.++.+.+-
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111111 1234456667777777777777776677777665543
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.20 E-value=0.87 Score=34.71 Aligned_cols=91 Identities=15% Similarity=0.052 Sum_probs=72.0
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHH---HHHHHHhcC
Q 041822 186 QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR-GFRPSVVTYNI---RIDGYCKKG 261 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~---li~~~~~~g 261 (500)
-++...|+.+.|++.|.+...-.|.+...||.-..++.-.|+.++|..=+++..+. |-+ +.....+ -...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 35678899999999999998877789999999999999999999999988888876 322 3333332 234566789
Q ss_pred ChhHHHHHHHHHHHcC
Q 041822 262 CFGDAMRLFEEMERVA 277 (500)
Q Consensus 262 ~~~~a~~~~~~m~~~~ 277 (500)
+-+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 9999999998887766
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.19 E-value=1.2 Score=35.21 Aligned_cols=127 Identities=10% Similarity=0.059 Sum_probs=72.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
....++..+.+.+.......+++.+.+....+...++.++..|++.+. ......+.. . .+......+++.|.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 345667777777778888888887776434667778888888876543 333333331 1 133334446666777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHH
Q 041822 260 KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLV-RNIHQARQLFDEMPKRNLKPDIGAYNAMISSLI 328 (500)
Q Consensus 260 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 328 (500)
.+.++++..++.++.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777777777766533 11222222222 6666666666541 14445666555544
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=1.4 Score=39.02 Aligned_cols=154 Identities=10% Similarity=0.058 Sum_probs=93.6
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHH
Q 041822 109 TLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAF 188 (500)
Q Consensus 109 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 188 (500)
-.......|++.+|..+|.......|.. ......+..+|...|+.+.|..++..++.... .........-|..+
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~--~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~----~~~~~~l~a~i~ll 213 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPEN--SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ----DKAAHGLQAQIELL 213 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCccc--chHHHHHHHHHHHcCChHHHHHHHHhCcccch----hhHHHHHHHHHHHH
Confidence 3444567788888888888887765554 34556677788888888888888887765431 11111122234444
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHH
Q 041822 189 CTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR--GFRPSVVTYNIRIDGYCKKGCFGDA 266 (500)
Q Consensus 189 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~a 266 (500)
.+.....+...+-.+.-. .+.|...-..+...+...|+.+.|...+-.+.++ |.. |...-..++..+.-.|.-+.+
T Consensus 214 ~qaa~~~~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 214 EQAAATPEIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHhcCCCHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHH
Confidence 444444443333333332 3447777777788888888888777766666554 433 556667777777766654444
Q ss_pred HHHH
Q 041822 267 MRLF 270 (500)
Q Consensus 267 ~~~~ 270 (500)
...+
T Consensus 292 ~~~~ 295 (304)
T COG3118 292 VLAY 295 (304)
T ss_pred HHHH
Confidence 3333
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.16 E-value=1.2 Score=34.90 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=77.4
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc-cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLL-TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
+..+-.-.....+.|++++|.+.|+.+....|... ...+-..++.+|-+.+++++|...++++.+..... ...+-..|
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h-p~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH-PNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-CCccHHHH
Confidence 34444555566788999999999999999876553 55677789999999999999999999998876432 12222223
Q ss_pred HHHHHHHHc--------------CCCHHHHHHHHHHhhhCCCCCHH
Q 041822 182 NVLLQAFCT--------------QKEMKEARSVFVKLLSRFAPNNK 213 (500)
Q Consensus 182 ~~ll~~~~~--------------~~~~~~A~~~~~~m~~~~~~~~~ 213 (500)
..-+..+.. .+....|..-|+++++..|-+..
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 222222221 12389999999999987665543
No 250
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.14 E-value=1.1 Score=40.56 Aligned_cols=131 Identities=14% Similarity=0.228 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCC----HHHHHHHHHhchhCCC---CCCHhhHHHHHHHHHhcCC-
Q 041822 263 FGDAMRLFEEMERVACLPSLQTITTLIHGAGL--VRN----IHQARQLFDEMPKRNL---KPDIGAYNAMISSLIRCRD- 332 (500)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~- 332 (500)
+++.+.+++.|.+.|..-+..+|-+..-.... ..+ ...|..+|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788899999988888777664333333 222 5678899999998753 3455667766654 3343
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHc-CC--hhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041822 333 ---LNAAMELMDEMEEKRIGHDNV-TYHTMFFGLMKS-SG--LEGVCKLYDRMIEGKFVPKTRTVVMLMK 395 (500)
Q Consensus 333 ---~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~-g~--~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 395 (500)
.+.++.+|+.+.+.|+..+.. -+.+-+-++... .+ ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 366778888888877765433 222222233221 11 4578899999999999988777765443
No 251
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.62 Score=42.91 Aligned_cols=96 Identities=17% Similarity=0.043 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVV-TYNIRIDG 256 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~ 256 (500)
..+++.+.-++.+.+++..|++.-+..+.-.++|+....-=..++...|+++.|+..|+.+++. .|+.. .-+.++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 4467778888888888888888888888766778888888888888888888888888888876 44433 33444444
Q ss_pred HHhcCCh-hHHHHHHHHHHH
Q 041822 257 YCKKGCF-GDAMRLFEEMER 275 (500)
Q Consensus 257 ~~~~g~~-~~a~~~~~~m~~ 275 (500)
--+.... +...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 4443333 334677777754
No 252
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.11 E-value=2.4 Score=38.22 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=14.0
Q ss_pred HcCCChHHHHHHHHHhHhh
Q 041822 114 ARMRYFDQAWELMSHVQRT 132 (500)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~ 132 (500)
.+.|+++.|..++.+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 4667888888888777664
No 253
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.10 E-value=1.4 Score=35.49 Aligned_cols=124 Identities=13% Similarity=0.040 Sum_probs=64.2
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCC-CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccH--HHHHHHHHHHhcccc
Q 041822 78 AAHSNGLKALEFFKFTLQHPHFTP-TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTL--KSMSIMLSRISKFQS 154 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 154 (500)
++.+.+++|+.-|..+.+. |... ..-..-......+..|+...|...|+++....+.+.-. ..-....-.+..+|.
T Consensus 69 A~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 4556667777777766664 2211 11222344455566677777777777766543221111 111111223455666
Q ss_pred HHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 155 YEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 155 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
+++.....+-+...+ .+.....-..|.-+-.+.|++.+|.+.|..+.+
T Consensus 148 y~dV~srvepLa~d~----n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDG----NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCC----ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666666555554332 333344445555566666666666666666654
No 254
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.00 E-value=1.6 Score=35.47 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=14.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 041822 236 HEMVLRGFRPSVVTYNIRIDGYCKKGCF 263 (500)
Q Consensus 236 ~~~~~~g~~~~~~~~~~li~~~~~~g~~ 263 (500)
.-+.+.|++|+...+..+++.+.+.|++
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 3334445555555555555555555543
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=2.7 Score=37.85 Aligned_cols=114 Identities=11% Similarity=-0.038 Sum_probs=47.3
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC---CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041822 261 GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR---NLKPDIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 261 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~ 337 (500)
|+..+|-..++++.+. .+.|...+...=.+|.-.|+.+.....++++... +++....+-..+..++..+|-+++|+
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 4444444444444432 2333444444444444445444444444444332 11111122222233334445555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 041822 338 ELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYD 376 (500)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 376 (500)
+.-++..+.+.. |...-.+....+-..|+..++.++..
T Consensus 196 k~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 196 KQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHH
Confidence 554444433221 33334444444444555555555443
No 256
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.91 E-value=3.1 Score=38.36 Aligned_cols=310 Identities=9% Similarity=0.011 Sum_probs=193.4
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHH--HcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHH--HhccccHH
Q 041822 81 SNGLKALEFFKFTLQHPHFTPTPDAFEKTLHIL--ARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSR--ISKFQSYE 156 (500)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~ 156 (500)
..|..+.+.|..-.+..| |..+-..+ +..|+-..|.++-.+..+. -..+...+..++.+ -.-.|+++
T Consensus 67 ~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~ 137 (531)
T COG3898 67 ESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYE 137 (531)
T ss_pred hCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchH
Confidence 355666666665554432 33333333 4568888888887776642 11233344445443 33469999
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYH 236 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 236 (500)
.|.+-|+.|...- ....--...|.-..-+.|..+.|.+.-+..-..-+.=...+...+...+..|+|+.|+++++
T Consensus 138 ~Ar~kfeAMl~dP-----EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 138 DARKKFEAMLDDP-----ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred HHHHHHHHHhcCh-----HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 9999999996431 11111123344444567888888888888776556667888999999999999999999998
Q ss_pred HHHHC-CCCCCHHH--HHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHhch
Q 041822 237 EMVLR-GFRPSVVT--YNIRIDGYCK---KGCFGDAMRLFEEMERVACLPSLQT-ITTLIHGAGLVRNIHQARQLFDEMP 309 (500)
Q Consensus 237 ~~~~~-g~~~~~~~--~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~ 309 (500)
.-.+. -+.++..- -..|+.+-.. .-+...|...-.+..+ +.||..- -..-..++.+.|+..++-.+++.+-
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 76654 23444322 2233332221 2345555555444444 3455432 2234567889999999999999998
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHH----HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 041822 310 KRNLKPDIGAYNAMISSLIRCRDLNAAM----ELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP 385 (500)
Q Consensus 310 ~~~~~~~~~~~~~li~~~~~~g~~~~a~----~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 385 (500)
+....|+ ... +..+.+.|+..... +-+..|+.. +....-.+..+-...|++..|..--+.... ..|
T Consensus 291 K~ePHP~--ia~--lY~~ar~gdta~dRlkRa~~L~slk~n----naes~~~va~aAlda~e~~~ARa~Aeaa~r--~~p 360 (531)
T COG3898 291 KAEPHPD--IAL--LYVRARSGDTALDRLKRAKKLESLKPN----NAESSLAVAEAALDAGEFSAARAKAEAAAR--EAP 360 (531)
T ss_pred hcCCChH--HHH--HHHHhcCCCcHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHhccchHHHHHHHHHHhh--hCc
Confidence 8754443 333 23345666542211 112333332 556666677888888999888776666554 378
Q ss_pred CHHHHHHHHHHH-HHcCCHhhHHHHHHHHHHC
Q 041822 386 KTRTVVMLMKFF-CVNFRVDLGLNLWGYLIDR 416 (500)
Q Consensus 386 ~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~ 416 (500)
....|..|...- ...|+-.++...+.+.++.
T Consensus 361 res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 361 RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 888887777665 4459999999999888874
No 257
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.90 E-value=4.1 Score=39.78 Aligned_cols=97 Identities=10% Similarity=0.065 Sum_probs=61.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHH-cCCChHHHHHHHHHhHhh-CCCCccHHHHHHHHH
Q 041822 70 ENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILA-RMRYFDQAWELMSHVQRT-HPSLLTLKSMSIMLS 147 (500)
Q Consensus 70 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~ 147 (500)
|...+..-.+-|..+.+.++|++..+ +++.+...|...+..+. ..|+.+...+.|+..... +.+-.+...|...+.
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie 159 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE 159 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 44444444556677777777777776 56667776666555544 346667777777777663 333345556666666
Q ss_pred HHhccccHHHHHHHHHHHHHH
Q 041822 148 RISKFQSYEETLEAFDRMERE 168 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~ 168 (500)
.-..++++.....+++++.+-
T Consensus 160 ~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 160 FENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccccHHHHHHHHHHHHhh
Confidence 666677777777777776543
No 258
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.82 E-value=0.098 Score=31.63 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHH
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNI 217 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 217 (500)
+..+...|.+.|++++|+++|++.++..|-|...+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 4444555555555555555555555444444444433
No 259
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.81 E-value=6.6 Score=41.72 Aligned_cols=105 Identities=13% Similarity=0.108 Sum_probs=56.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHh--hHHHHHHHHHh
Q 041822 252 IRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIG--AYNAMISSLIR 329 (500)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~ 329 (500)
+..+.+...+.+++|.-.|+..-+. .-.+.+|...|++++|..+..++.... +.. +-..|+.-+..
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHH
Confidence 3334444556677776666654331 234566677777777777766654421 111 22456666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 041822 330 CRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYD 376 (500)
Q Consensus 330 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 376 (500)
.++.-+|-++..+.... - .-.+..|++...+++|.++-.
T Consensus 1012 ~~kh~eAa~il~e~~sd----~----~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD----P----EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred cccchhHHHHHHHHhcC----H----HHHHHHHhhHhHHHHHHHHHH
Confidence 77776666666555442 1 112334444555555555443
No 260
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=2.9 Score=42.43 Aligned_cols=176 Identities=11% Similarity=0.099 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNIL----LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDG 256 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 256 (500)
...-+..+++...++.|..+-+.-.. |..+...+ ...+.+.|++++|...|-+-+.. +.|. .+|.-
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 34455556666666666655444321 33333333 33344667777777666554432 1222 23444
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 041822 257 YCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAA 336 (500)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 336 (500)
|....+..+-..+++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 4555566666667777777775 345555677777777777777666665544 3321 11234455555666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 041822 337 MELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRM 378 (500)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 378 (500)
..+-..... +......++ -..|++++|++++..+
T Consensus 483 ~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 655443332 233333333 3457777777777654
No 261
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.70 E-value=1.9 Score=34.99 Aligned_cols=135 Identities=10% Similarity=0.052 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 267 MRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 267 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
.++++.+.+.+++|+...+..+++.+.+.|++.... ++.+.++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 455666667788888888888888888888766544 34445555555544444433322 223333333344332
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHH
Q 041822 347 RIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLID 415 (500)
Q Consensus 347 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 415 (500)
=...+..++..+...|++-+|+++.+...... .++. ..++.+..+.+|...-..++.-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVPA---RKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCCH---HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11234556677778888888888877653221 1222 3356666666666555555555444
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=3.1 Score=36.86 Aligned_cols=142 Identities=9% Similarity=0.057 Sum_probs=88.3
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC-HHhHHHHHHHHHhcC
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN-NKTMNILLLGFKESG 226 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~l~~~~~~~~ 226 (500)
.....|++.+|...|+..... .+.+...--.+..+|...|+.+.|..++..+......+ ......-|..+.+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~-----~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA-----APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh-----CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 456778888999988888777 45667778888889999999999999998887422211 112222334444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC
Q 041822 227 DVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVAC-LPSLQTITTLIHGAGLVR 296 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~ 296 (500)
...+...+-.+.... +-|...-..+...+...|+.+.|++.+-.+.+++. .-|...-..++..+.-.|
T Consensus 218 ~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 218 ATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444443444433 22666666777888888888888887776665421 123333444444444333
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.39 E-value=0.15 Score=30.76 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=21.7
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCC
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSL 136 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 136 (500)
.++..+...+.+.|++++|+++++++.+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345566666777777777777777777766553
No 264
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.21 E-value=0.75 Score=40.79 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=57.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCCCCHHHHH
Q 041822 317 IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE-----GKFVPKTRTVV 391 (500)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~ 391 (500)
..++..++..+..+|+.+.+.+.+++.....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 346677777888888888888888888777554 777888888888888888888888877653 56677666554
Q ss_pred HHHHH
Q 041822 392 MLMKF 396 (500)
Q Consensus 392 ~ll~~ 396 (500)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44443
No 265
>PRK11906 transcriptional regulator; Provisional
Probab=94.20 E-value=4.1 Score=38.75 Aligned_cols=74 Identities=9% Similarity=0.011 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHH
Q 041822 371 VCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPH-GHALDLLVTGLCSRGRWEEAFECSKQ 447 (500)
Q Consensus 371 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 447 (500)
|.++-++..+.+ .-|+.....+..+....++++.|...|++....+ || ..+|-.....+.-.|+.++|.+.+++
T Consensus 323 a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 323 ALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444332 2233433333333344444445555554444432 22 22222222333334455555544444
No 266
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.18 E-value=2.4 Score=33.97 Aligned_cols=74 Identities=16% Similarity=0.007 Sum_probs=39.2
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~ 224 (500)
++..-.+.++.+++..+++.+... .|.....-..-...+...|+|.+|..+|+++.++ .|.......|+..|..
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvL-----RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVL-----RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER-APGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-CCCChHHHHHHHHHHH
Confidence 333445566777777777766654 2333333333344456677777777777776543 2333333344444433
No 267
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.15 E-value=3 Score=35.07 Aligned_cols=183 Identities=14% Similarity=0.091 Sum_probs=99.1
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHH
Q 041822 81 SNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLE 160 (500)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (500)
|-..-|.--|...+... |--+..||.+.-.+...|+++.|.+.|+...+.+|.. +....+.-+..| --|++.-|.+
T Consensus 79 GL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~Y-Y~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALY-YGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeee-ecCchHhhHH
Confidence 33334444444444431 3345678888888888888999998888888876543 344444444433 4578888877
Q ss_pred HHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 161 AFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
-|-..-..+. ..|-...|--+. -..-++.+|..-+.+--++. |..-|...|-.+.- |++ ..+.+++.+..
T Consensus 155 d~~~fYQ~D~---~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~--d~e~WG~~iV~~yL-gki-S~e~l~~~~~a 224 (297)
T COG4785 155 DLLAFYQDDP---NDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS--DKEQWGWNIVEFYL-GKI-SEETLMERLKA 224 (297)
T ss_pred HHHHHHhcCC---CChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc--cHhhhhHHHHHHHH-hhc-cHHHHHHHHHh
Confidence 7766655421 111122232222 23446666665554443332 33344333333221 111 11112222222
Q ss_pred CCC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 241 RGF------RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 241 ~g~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
..- +.=..||--+.+.+...|+.++|..+|+-....+
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 210 0114567778888888899999998888877654
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=4.3 Score=36.64 Aligned_cols=117 Identities=9% Similarity=0.057 Sum_probs=61.6
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHH
Q 041822 190 TQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR---GFRPSVVTYNIRIDGYCKKGCFGDA 266 (500)
Q Consensus 190 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~a 266 (500)
..|++.+|-..++++++..|.|...++..=.+|.-.|+.+.-...++++... +++.....-..+.-++...|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3455555555666666666666666666666666666665555555555433 1111122222233334455666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 041822 267 MRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDE 307 (500)
Q Consensus 267 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 307 (500)
++.-++..+.+ +.|...-.+....+-..|+..++.++..+
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66666555543 33444455555555556666666555443
No 269
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.97 E-value=10 Score=40.45 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=44.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcC
Q 041822 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVPKTR--TVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSR 435 (500)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 435 (500)
.+.+|...|+|.+|+.+..++... -+.. +-..|..-+...++.-+|-++..+.... | ...+..|++.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhH
Confidence 355666666666666666555321 1111 1134555566667766666666555431 1 2334456677
Q ss_pred CCHHHHHHHHHHH
Q 041822 436 GRWEEAFECSKQM 448 (500)
Q Consensus 436 g~~~~A~~~~~~m 448 (500)
..|++|..+....
T Consensus 1040 ~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1040 KEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHHHhc
Confidence 7777777765544
No 270
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=1.7 Score=40.14 Aligned_cols=137 Identities=9% Similarity=0.052 Sum_probs=91.1
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD 227 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~ 227 (500)
.|.+.|++..|...|++....-. |.+.-+.++... ... .-..++..+..++.+.++
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~-----------------~~~~~~~ee~~~-~~~------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLE-----------------YRRSFDEEEQKK-AEA------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhh-----------------ccccCCHHHHHH-HHH------HHHHHhhHHHHHHHhhhh
Confidence 46788999999998888654421 111111122111 111 234567888899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCC-HHHHHHHH
Q 041822 228 VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGA-GLVRN-IHQARQLF 305 (500)
Q Consensus 228 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~-~~~a~~~~ 305 (500)
+..|.+.-+..+..+ ++|.-..-.=..+|...|+++.|+..|+++++.. |+....+.=+..| .+... .+...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888775 4466666666788999999999999999999864 6655555444444 33333 34446777
Q ss_pred HhchhC
Q 041822 306 DEMPKR 311 (500)
Q Consensus 306 ~~~~~~ 311 (500)
..|...
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 777553
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.65 E-value=0.79 Score=40.65 Aligned_cols=77 Identities=12% Similarity=0.087 Sum_probs=51.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL-----RGFRPSVVTYNIRI 254 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~~li 254 (500)
++..++..+...|+.+.+...++++....+-+...|..+|.+|.+.|+...|...|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4566666777777777777777777766666777777777777777777777777766654 26666666655554
Q ss_pred HH
Q 041822 255 DG 256 (500)
Q Consensus 255 ~~ 256 (500)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
No 272
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.49 E-value=9.3 Score=38.44 Aligned_cols=186 Identities=12% Similarity=0.038 Sum_probs=99.6
Q ss_pred hHHHHHHHHHhHhhCCCCccHHHHHHHHHH-HhccccHHHHHHHHHHHHHH---HhccccCCChhhHHHHHHHHHcCC--
Q 041822 119 FDQAWELMSHVQRTHPSLLTLKSMSIMLSR-ISKFQSYEETLEAFDRMERE---IFVGIRKFGSEEFNVLLQAFCTQK-- 192 (500)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~ll~~~~~~~-- 192 (500)
...|.+.++...+.+....-...-...... +....+.+.|+..|+...+. .. ..-......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccHHHHHHhcCCCC
Confidence 456777777777653221111111112222 45667888888888887661 00 1114445666777776643
Q ss_pred ---CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChh
Q 041822 193 ---EMKEARSVFVKLLSRFAPNNKTMNILLLGFKE-SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC----KKGCFG 264 (500)
Q Consensus 193 ---~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----~~g~~~ 264 (500)
+.+.|..++....+.-.|+....-..+..... ..+...|.++|....+.|.. ..+-.+..+|. ...+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHH
Confidence 55667777777766334444443333332222 24567788888888777732 22222222222 234567
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCC
Q 041822 265 DAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRN 312 (500)
Q Consensus 265 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 312 (500)
.|..++.+.-+.| .|...--...+..+.. ++++.+.-.+..+.+.|
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 7777777777776 2222222223333333 66666666666655554
No 273
>PRK11906 transcriptional regulator; Provisional
Probab=93.43 E-value=5.6 Score=37.90 Aligned_cols=131 Identities=7% Similarity=0.022 Sum_probs=66.0
Q ss_pred HhH--HHHHHHHHcC-----CChHHHHHHHHHhH---hhCCCCccHHHHHHHHHHHhc---------cccHHHHHHHHHH
Q 041822 104 DAF--EKTLHILARM-----RYFDQAWELMSHVQ---RTHPSLLTLKSMSIMLSRISK---------FQSYEETLEAFDR 164 (500)
Q Consensus 104 ~~~--~~l~~~~~~~-----g~~~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~ 164 (500)
..| ...+.+.... -+.+.|..+|.+.. +.+|.. ...+..+..++.. .....+|.+.-++
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~--a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK--TECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc--HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 455 4555555442 23467888888888 443332 2233222222111 1223333444444
Q ss_pred HHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 165 MEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
..+. .+.|..+...+..+..-.++++.|...|++...-.|....+|........-.|+.++|.+.+++..+.
T Consensus 330 Avel-----d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 330 VSDI-----TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHhc-----CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 4333 34555555555555555556666666666665533444445555555555556666666666664443
No 274
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.43 E-value=5 Score=40.86 Aligned_cols=224 Identities=13% Similarity=0.031 Sum_probs=91.3
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCC-------hHHHHHHHHHhHhhCC--C
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRY-------FDQAWELMSHVQRTHP--S 135 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~--~ 135 (500)
....+|.+ +-.+.+.|++++|+++...... .+......+...+..+....+ -++...-++...+..+ +
T Consensus 110 ~~~p~Wa~-Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~D 186 (613)
T PF04097_consen 110 NGDPIWAL-IYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGD 186 (613)
T ss_dssp TTEEHHHH-HHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-
T ss_pred CCCccHHH-HHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCC
Confidence 44455644 3456789999999999965554 345666777888888876532 2344555555444322 2
Q ss_pred CccHHHHHHHHHHHhccccHHHHH-HHHHHHHHHHhccccCCChhhHHHHHHHHHcC---------CCHHHHHHHHHHhh
Q 041822 136 LLTLKSMSIMLSRISKFQSYEETL-EAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQ---------KEMKEARSVFVKLL 205 (500)
Q Consensus 136 ~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~A~~~~~~m~ 205 (500)
......|..+ +++.-...-. .+...+.+ ..|-.|.-.-... -.+++..+.+.+.-
T Consensus 187 pyK~AvY~il----g~cD~~~~~~~~V~~tiED-----------~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G 251 (613)
T PF04097_consen 187 PYKRAVYKIL----GRCDLSRRHLPEVARTIED-----------WLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG 251 (613)
T ss_dssp HHHHHHHHHH----HT--CCC-S-TTC--SHHH-----------HHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-
T ss_pred hHHHHHHHHH----hcCCccccchHHHhCcHHH-----------HHHHHHHhhccCCCccccccccccHHHHHHHHHHhc
Confidence 2222222222 2211100000 11111111 0111111111111 01222222222222
Q ss_pred h-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHH
Q 041822 206 S-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA-CLPSLQ 283 (500)
Q Consensus 206 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~ 283 (500)
+ .+.+ ....-.....+.-.|.++.|.+++-. ..+...+.+++...+..|.-.+-.+... ..+.... -.|...
T Consensus 252 e~~F~~-~~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~l 325 (613)
T PF04097_consen 252 ESHFNA-GSNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPL 325 (613)
T ss_dssp GGGCTT-------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--------------------------
T ss_pred hhhccc-chhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCc
Confidence 2 2333 11122233445567889998888766 2234556667666665543322222211 2222111 011125
Q ss_pred HHHHHHHHHHc---cCCHHHHHHHHHhchhCC
Q 041822 284 TITTLIHGAGL---VRNIHQARQLFDEMPKRN 312 (500)
Q Consensus 284 ~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~ 312 (500)
-+..||..|.+ ..+...|.++|-.+....
T Consensus 326 n~arLI~~Y~~~F~~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 326 NFARLIGQYTRSFEITDPREALQYLYLICLFK 357 (613)
T ss_dssp -HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS-
T ss_pred CHHHHHHHHHHHHhccCHHHHHHHHHHHHHcC
Confidence 57777777765 456888888887776653
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.29 E-value=6.4 Score=35.99 Aligned_cols=226 Identities=11% Similarity=0.078 Sum_probs=108.1
Q ss_pred HHcCCCHHHHHHHHHHhhhC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHH----HHHHCCCCCC---HHHHHHHHHHH
Q 041822 188 FCTQKEMKEARSVFVKLLSR---FAPNNKTMNILLLGFKESGDVTAMEMFYH----EMVLRGFRPS---VVTYNIRIDGY 257 (500)
Q Consensus 188 ~~~~~~~~~A~~~~~~m~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~g~~~~---~~~~~~li~~~ 257 (500)
+....+.++|+..+.+.+.+ ......+|..+..+.++.|.+++++..-- ...+. +.+ -..|..+.+++
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~ 93 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSN 93 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 44566777777777776642 22234566666777777777665554321 11111 111 22334444444
Q ss_pred HhcCChhHHHHHHHHHHH-cCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHhchhCC-----CCCCHhhHHHHHHHHH
Q 041822 258 CKKGCFGDAMRLFEEMER-VACLP---SLQTITTLIHGAGLVRNIHQARQLFDEMPKRN-----LKPDIGAYNAMISSLI 328 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~-~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~ 328 (500)
-+..++.+++.+-..-.. .|..| .-....++-.++...+.++++++.|+...+.. .-....+|..|-..|.
T Consensus 94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence 444445555544443322 11111 11122334455555666777777766654421 1123346666777777
Q ss_pred hcCCHHHHHHHHHHHHH----CCCCCCHHHHHH-----HHHHHHHcCChhHHHHHHHHHH----hCCCCCC-HHHHHHHH
Q 041822 329 RCRDLNAAMELMDEMEE----KRIGHDNVTYHT-----MFFGLMKSSGLEGVCKLYDRMI----EGKFVPK-TRTVVMLM 394 (500)
Q Consensus 329 ~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~-----li~~~~~~g~~~~a~~~~~~~~----~~~~~p~-~~~~~~ll 394 (500)
+..|+++|.-+..+..+ -++.--..-|.. |.-++...|....|.+.-++.. ..|-.+. ......+.
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 77777776655544322 122211112222 2334555666666665555443 2232221 22333444
Q ss_pred HHHHHcCCHhhHHHHHHHHHH
Q 041822 395 KFFCVNFRVDLGLNLWGYLID 415 (500)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~~ 415 (500)
..|-..|+.+.|+.-|+....
T Consensus 254 DIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHhcccHhHHHHHHHHHHH
Confidence 455555666666555555443
No 276
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.18 E-value=11 Score=38.41 Aligned_cols=89 Identities=12% Similarity=0.077 Sum_probs=45.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCC-CCCCHhhHHHHHHHHHhc-
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRN-LKPDIGAYNAMISSLIRC- 330 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~- 330 (500)
....+.-.|+++.|++.+-+ ..+...+.+++...+..|.-.+-.+... ..+.... -.|...-+..||..|.+.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34556678999999999887 3344567777777776655443333222 2222211 011225688888888764
Q ss_pred --CCHHHHHHHHHHHHHC
Q 041822 331 --RDLNAAMELMDEMEEK 346 (500)
Q Consensus 331 --g~~~~a~~~~~~~~~~ 346 (500)
.+..+|.++|--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 5788888888766654
No 277
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.85 E-value=1.9 Score=35.66 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=7.0
Q ss_pred cCCHHHHHHHHHhc
Q 041822 295 VRNIHQARQLFDEM 308 (500)
Q Consensus 295 ~~~~~~a~~~~~~~ 308 (500)
.+++..|-+.|-+.
T Consensus 126 ~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 126 QRDFKEAAELFLDS 139 (177)
T ss_pred hchHHHHHHHHHcc
Confidence 44555555555443
No 278
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.30 E-value=6.6 Score=33.62 Aligned_cols=202 Identities=16% Similarity=0.084 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHH
Q 041822 247 VVTYNIRIDGYCKKGCFGDAMRLFEEMERV-ACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325 (500)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 325 (500)
...+......+...+++..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 345555555566666666666666555532 122334445555555555566666666666665543222 111222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC
Q 041822 326 -SLIRCRDLNAAMELMDEMEEKRI--GHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP-KTRTVVMLMKFFCVNF 401 (500)
Q Consensus 326 -~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~ 401 (500)
.+...|+++.|...+........ ......+......+...++.+.+...+....... .. ....+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 56677777777777776644211 1122333333344556677777777777776542 22 3555666666677777
Q ss_pred CHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 402 RVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
+++.+...+......... ....+..+...+...|..+++...+.+....
T Consensus 217 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777764311 2333444444444666677777777777654
No 279
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.28 E-value=10 Score=35.86 Aligned_cols=365 Identities=12% Similarity=0.116 Sum_probs=188.4
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCC---CCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHP---HFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKS 141 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 141 (500)
++-+.-++.+..+...|++.++..+++++...- ....+..+|+.++-.++++ .|-++.+......-...
T Consensus 126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdy 197 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPDY 197 (549)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChHH
Confidence 556666788888999999999998888877631 2337899999988887764 33333332211111222
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcC--CCHHHHHHHHHHhhh-CCCCCH-HhHHH
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQ--KEMKEARSVFVKLLS-RFAPNN-KTMNI 217 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~A~~~~~~m~~-~~~~~~-~~~~~ 217 (500)
| .++..|.+.=+.-++.. +++ .-|-......++....-. .+..--.+++..... -+.|+- -+...
T Consensus 198 Y-emilfY~kki~~~d~~~-Y~k---------~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~ 266 (549)
T PF07079_consen 198 Y-EMILFYLKKIHAFDQRP-YEK---------FIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEP 266 (549)
T ss_pred H-HHHHHHHHHHHHHhhch-HHh---------hCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHH
Confidence 2 23333332211111100 000 011111122222222111 111112222222221 123332 22333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH-------
Q 041822 218 LLLGFKESGDVTAMEMFYHEMVLRGFR----PSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTIT------- 286 (500)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~------- 286 (500)
|...+.+ +.+++..+-+.+....+. -=..+|..++....+.++..+|.+.+.-+.-.+ |+...-.
T Consensus 267 L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~ 342 (549)
T PF07079_consen 267 LKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPK 342 (549)
T ss_pred HHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHH
Confidence 3333333 344444443333322111 024467777777788888888887777665533 3322111
Q ss_pred HHHHHHH----ccCCHHHHHHHHHhchhCCCCCCHhhHHHHH---HHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041822 287 TLIHGAG----LVRNIHQARQLFDEMPKRNLKPDIGAYNAMI---SSLIRCRD-LNAAMELMDEMEEKRIGHDNVTYHTM 358 (500)
Q Consensus 287 ~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l 358 (500)
.+-+..+ ...+...-+.+|+.....++.. .....-|+ .-+.+.|. -++|.++++.+.+-... |...-|.+
T Consensus 343 ~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~y-D~ec~n~v 420 (549)
T PF07079_consen 343 VLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNY-DIECENIV 420 (549)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccc-cHHHHHHH
Confidence 1112222 1122445556677666665431 11222222 23445555 78899999988875222 44333332
Q ss_pred H----HHHHH---cCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HHHcCCHhhHHHHHHHHHHCCCCCCHhHH
Q 041822 359 F----FGLMK---SSGLEGVCKLYDRMIEGKFVPK----TRTVVMLMKF--FCVNFRVDLGLNLWGYLIDRGFCPHGHAL 425 (500)
Q Consensus 359 i----~~~~~---~g~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 425 (500)
. .+|.+ ...+.+.+++-+-+.+.|+.|- ...-|.|..| +...|++.++.-.-..+.+ +.|++.+|
T Consensus 421 ~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~ 498 (549)
T PF07079_consen 421 FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAY 498 (549)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHH
Confidence 2 23322 2334455555555567777764 2333334333 3567888888766666655 67999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 041822 426 DLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYR 461 (500)
Q Consensus 426 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 461 (500)
..+.-++....++++|.+++.++ +|+..+++
T Consensus 499 RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~d 529 (549)
T PF07079_consen 499 RLLGLCLMENKRYQEAWEYLQKL-----PPNERMRD 529 (549)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHH
Confidence 99999999999999999999876 45555553
No 280
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=1.1 Score=43.56 Aligned_cols=150 Identities=13% Similarity=0.010 Sum_probs=92.3
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTA 230 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (500)
-.|+++.|..++-.+.+. .-+.+...+.+.|..++|+++ .+|..-- .....+.|+++.
T Consensus 598 mrrd~~~a~~vLp~I~k~-----------~rt~va~Fle~~g~~e~AL~~--------s~D~d~r---Felal~lgrl~i 655 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE-----------IRTKVAHFLESQGMKEQALEL--------STDPDQR---FELALKLGRLDI 655 (794)
T ss_pred hhccccccccccccCchh-----------hhhhHHhHhhhccchHhhhhc--------CCChhhh---hhhhhhcCcHHH
Confidence 345566665555444322 345666667777777777654 2222211 233445678888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 231 MEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 231 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
|.++..+.. +..-|..|.++..+.|++..|.+.|....+ |..|+-.+...|+-+....+-....+
T Consensus 656 A~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 656 AFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred HHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 877654433 567788888888888888888888876655 44566666677777666655555555
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 311 RNLKPDIGAYNAMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 311 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 343 (500)
.|. .|....+|...|+++++.+++.+-
T Consensus 721 ~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 721 QGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 552 223334566778888887777543
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.82 E-value=0.42 Score=27.30 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041822 424 ALDLLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677888888888888888888754
No 282
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.78 E-value=13 Score=35.82 Aligned_cols=61 Identities=10% Similarity=0.096 Sum_probs=37.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 319 AYNAMISSLIRCRDLNAAMELMDEMEEKRIG-HDNVTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
+-..+..++-+.|+.++|.+.+++|.+.... -.......|+.++...+.+.++..++.+..
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3344555566677777777777777654221 122344556777777777777777777654
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.74 E-value=2.9 Score=34.61 Aligned_cols=95 Identities=14% Similarity=-0.032 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHhhHHHHHHHHHHC---CCCCCH----h
Q 041822 353 VTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK--TRTVVMLMKFFCVNFRVDLGLNLWGYLIDR---GFCPHG----H 423 (500)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~----~ 423 (500)
..+..+...|++.|+.++|.+.|.++.+....+. ...+..+|+.+...+++..+.....+.... |-.++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3456667777777777777777777776544443 334556666777777777777776665542 211221 2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041822 424 ALDLLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
+|..+. +...+++.+|-+.|-+..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccC
Confidence 233332 344688888888876664
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.69 E-value=5.9 Score=31.79 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=36.2
Q ss_pred HHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 041822 111 HILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMERE 168 (500)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 168 (500)
..-.+.++.+.+..++.-+.-..|.......+...+ +...|++.+|..+|+++...
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 333455677777777777777666666555554444 56677777777777776543
No 285
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.67 E-value=17 Score=36.87 Aligned_cols=309 Identities=11% Similarity=0.039 Sum_probs=159.8
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCH--HHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEM--KEARSVFVKLLSRFAPNNKTMNILLLG 221 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~A~~~~~~m~~~~~~~~~~~~~l~~~ 221 (500)
.++..+...+.+..|.++-..+...- ..+..+|.....-+.+..+. +++.+..++=.+..-....+|..+.+.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~-----~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~ 516 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPE-----SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARR 516 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcc-----ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHH
Confidence 35566667777777777766653221 11134555555555554321 222222222221112355667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 041822 222 FKESGDVTAMEMFYHEMVLRGFR----PSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN 297 (500)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 297 (500)
....|+.+-|..+++.=...+.+ .+..-+...+.-+...|+.+-...++-.+.++ .+...+...+ .+
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~ 587 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RN 587 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hh
Confidence 77778888777765432221110 01122334444555566666666666555543 1222222222 23
Q ss_pred HHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH--HHHH----HCCCCCCHHHHHHHHHHHHHcCC----
Q 041822 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELM--DEME----EKRIGHDNVTYHTMFFGLMKSSG---- 367 (500)
Q Consensus 298 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~--~~~~----~~~~~~~~~~~~~li~~~~~~g~---- 367 (500)
...|..+|.+..+.. |..+ +- .+.+.++-..+...| +... ..+..|+.. ....++.+...
T Consensus 588 ~p~a~~lY~~~~r~~---~~~~---l~-d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e 657 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQ---DRAT---LY-DFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFE 657 (829)
T ss_pred chhhhHHHHHHHHhh---chhh---hh-hhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhH
Confidence 344555555544421 1111 11 122223222222222 1100 112223322 23333433322
Q ss_pred ------hhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHH
Q 041822 368 ------LEGVCKLYDRMIE-GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEE 440 (500)
Q Consensus 368 ------~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 440 (500)
..+-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.+++..++|++
T Consensus 658 ~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kwee 733 (829)
T KOG2280|consen 658 AKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHH
Confidence 2223333333332 2333334455556666778899999888766543 3788899889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 441 AFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 441 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
-+++-+.+. ++.-|.-...+|.+.|+.++|.++.-+....
T Consensus 734 LekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l 773 (829)
T KOG2280|consen 734 LEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL 773 (829)
T ss_pred HHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh
Confidence 888766654 2455667788899999999999987765443
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.46 E-value=0.49 Score=26.98 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 041822 250 YNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666667777776666663
No 287
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.30 E-value=6.1 Score=31.18 Aligned_cols=53 Identities=15% Similarity=-0.007 Sum_probs=34.1
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
-...++.+++..+++.|.-. .|.....-..-.-.+...|+|++|.++|+++.+
T Consensus 20 aL~~~d~~D~e~lLdALrvL-----rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVL-----RPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHh-----CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 34467777777777777655 233333333444456677888888888888775
No 288
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.24 E-value=8.7 Score=32.84 Aligned_cols=223 Identities=17% Similarity=0.104 Sum_probs=154.9
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHhchhC-CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041822 260 KGCFGDAMRLFEEMERVACL-PSLQTITTLIHGAGLVRNIHQARQLFDEMPKR-NLKPDIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 260 ~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~ 337 (500)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45566666666666655422 13567777788888999999999888887752 23445667777888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHHcCChhHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHhhHHHHHHH
Q 041822 338 ELMDEMEEKRIGHDNVTYHTMFF-GLMKSSGLEGVCKLYDRMIEGKFVP----KTRTVVMLMKFFCVNFRVDLGLNLWGY 412 (500)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~ 412 (500)
+.+.........+ ......... .+...|+++.+...+.+.... .| ....+......+...++.+.+...+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 9999888764443 122222333 788999999999999998652 33 234444444456778999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 413 LIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 413 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
..+.........+..+...+...++++.|...+......... ....+..+...+...+..+.+....+.....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 988542214677888888999999999999999999864322 2334444444444666677777666655544
No 289
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.08 E-value=7.8 Score=35.48 Aligned_cols=170 Identities=14% Similarity=0.105 Sum_probs=78.5
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhh---CCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc-cccCCChh
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRT---HPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFV-GIRKFGSE 179 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 179 (500)
..|..+.+.+-+.-++.+++.+-..-... .+..........+..++...+.++++++.|+...+.... +.......
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 44445555554444555555544443332 111111223334555555556666666666554332211 10122234
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhh---CCC-CCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLS---RFA-PNN------KTMNILLLGFKESGDVTAMEMFYHEMVL----RGFRP 245 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~-~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~g~~~ 245 (500)
+|..|...|.+..+.++|.-+..+..+ .+. .|. .....|.-++...|.+..|.+.-++..+ .|-++
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 566666666666666666555544432 111 111 1122333444555655555544444332 23221
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 246 -SVVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 246 -~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
-......+.+.|...|+.+.|+.-|++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1223344566666777777777666654
No 290
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.94 E-value=6.7 Score=38.44 Aligned_cols=132 Identities=18% Similarity=0.239 Sum_probs=69.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
..+.+++.+-+.|..++|+++-. .|+ . -.....+.|+++.|.++..+.. +..-|..|
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~-----D~d----~----rFelal~lgrl~iA~~la~e~~----------s~~Kw~~L 672 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELST-----DPD----Q----RFELALKLGRLDIAFDLAVEAN----------SEVKWRQL 672 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCC-----Chh----h----hhhhhhhcCcHHHHHHHHHhhc----------chHHHHHH
Confidence 44455555666666555555421 111 0 1122335566666666544432 33446666
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFG 264 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 264 (500)
.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|. .|...-+|...|+++
T Consensus 673 g~~al~~~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~ 738 (794)
T KOG0276|consen 673 GDAALSAGELPLASECFLRARD--------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYE 738 (794)
T ss_pred HHHHhhcccchhHHHHHHhhcc--------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHH
Confidence 6777777777777666666553 44555566666665555555444444442 122223445566666
Q ss_pred HHHHHHHHH
Q 041822 265 DAMRLFEEM 273 (500)
Q Consensus 265 ~a~~~~~~m 273 (500)
++.+++.+-
T Consensus 739 ~C~~lLi~t 747 (794)
T KOG0276|consen 739 ECLELLIST 747 (794)
T ss_pred HHHHHHHhc
Confidence 666665543
No 291
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.75 E-value=22 Score=36.59 Aligned_cols=173 Identities=12% Similarity=0.093 Sum_probs=109.7
Q ss_pred HHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHH----HHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHh
Q 041822 75 RLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEK----TLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRIS 150 (500)
Q Consensus 75 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (500)
..+.+...+.-|+.+-+.- ..+..+... ..+.|-+.|++++|...+-+.... ... ..++.-|.
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~---le~----s~Vi~kfL 408 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF---LEP----SEVIKKFL 408 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc---CCh----HHHHHHhc
Confidence 3345566777777765432 233444433 444455789999998877554431 111 23566677
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTA 230 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (500)
...+..+-...++.+.+.+. .+..--..|+.+|.+.++.++-.+..+.-.+|.. ..-....+..+.+.+-.++
T Consensus 409 daq~IknLt~YLe~L~~~gl-----a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGL-----ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred CHHHHHHHHHHHHHHHHccc-----ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHH
Confidence 77888888888888888763 3555668899999999999887777666543311 1224566777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 231 MEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 231 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
|..+-..... +......++. ..|++++|++.+..+.-
T Consensus 482 a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcCCH
Confidence 7766443322 3444444443 56889999998887643
No 292
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.74 E-value=6.5 Score=32.62 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=56.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCC-CCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHH
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHP-SLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQ 186 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 186 (500)
.+...+..+|++++|..-++....... .....-.-..+.+.....|.+++|+..++.....++ .......-.+
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w------~~~~~elrGD 167 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW------AAIVAELRGD 167 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH------HHHHHHHhhh
Confidence 445556777888888887776664211 111222233455666777888888888777655432 1222334456
Q ss_pred HHHcCCCHHHHHHHHHHhhh
Q 041822 187 AFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~ 206 (500)
.+...|+-++|..-|...++
T Consensus 168 ill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHcCchHHHHHHHHHHHH
Confidence 67777777777777777665
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.74 E-value=7 Score=30.87 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=39.6
Q ss_pred HcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 041822 114 ARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMERE 168 (500)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 168 (500)
...++.+++..+++-+.-..|.......+...+ +...|++++|.++|+++...
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 457788888888888887777776666665554 66788888888888888655
No 294
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.73 E-value=12 Score=33.41 Aligned_cols=116 Identities=13% Similarity=0.189 Sum_probs=64.2
Q ss_pred ChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHc-cC-CHHHHHHHHHhchh-CCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041822 262 CFGDAMRLFEEMER-VACLPSLQTITTLIHGAGL-VR-NIHQARQLFDEMPK-RNLKPDIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 262 ~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~ 337 (500)
.+.+|+++|+.... ..+.-|..+...+++.... .+ ....-.++.+-+.. .|..++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666653222 2344556666666665544 11 12222223332222 234556666677777777777777777
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 041822 338 ELMDEMEEK-RIGHDNVTYHTMFFGLMKSSGLEGVCKLYDR 377 (500)
Q Consensus 338 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (500)
++++..... +...|...|..+|......|+..-..++.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 776665544 4555667777777777777776555555443
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.42 E-value=4.8 Score=35.98 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=74.1
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR----FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVT 249 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 249 (500)
.+..+.+...++..-....+++.++..+-+++.. ..|+... ...++.+.+ -+.+++..++..=++.|+-||-.+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence 4556666677777777778889998888887741 2233222 233333333 356788888888888899999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 250 YNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
++.+|+.+.+.+++.+|..+.-.|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999998887776544
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.24 E-value=4.8 Score=36.00 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=46.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 041822 209 APNNKTMNILLLGFKESGDVTAMEMFYHEMVLR---GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTI 285 (500)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 285 (500)
+....+...++.......+++.+...+-.+... ...|+...+ +.++.+. .-++++++.++..=.+.|+.||.+++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 334444444444444445555555554444432 111221111 1122221 23444555555555555555555555
Q ss_pred HHHHHHHHccCCHHHHHHHHHhchh
Q 041822 286 TTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 286 ~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
+.+|+.+.+.+++.+|.++.-.|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5555555555555555555444443
No 297
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.78 E-value=25 Score=35.82 Aligned_cols=24 Identities=8% Similarity=0.252 Sum_probs=16.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 041822 252 IRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
.|+..|...|++.+|++++-..++
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhccC
Confidence 366777777777777777766554
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.45 E-value=0.52 Score=26.51 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=16.4
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEMKEAR 198 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~~~A~ 198 (500)
.|.+..+|+.+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4556666777777777777666664
No 299
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.69 E-value=24 Score=34.10 Aligned_cols=54 Identities=7% Similarity=-0.038 Sum_probs=23.9
Q ss_pred HHHHHcCCHhhHHHHHHHHHHCC-CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041822 395 KFFCVNFRVDLGLNLWGYLIDRG-FCPHGHALDLLVTGLCSRGRWEEAFECSKQM 448 (500)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 448 (500)
.++-+.|+.++|.+.+.+|.+.. ...+..+...|+.++...+.+.++..++.+.
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33344455555555555544321 1112223344455555555555555555544
No 300
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.56 E-value=21 Score=33.34 Aligned_cols=65 Identities=14% Similarity=-0.033 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 246 SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLP---SLQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
...+|..+.+.+.+.|+++.|...+.++.+.+... .....-.-.+..-..|+.++|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567777777777788777777777776643111 223333334455566777777777766665
No 301
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.50 E-value=2.8 Score=30.42 Aligned_cols=74 Identities=7% Similarity=-0.012 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCHh--hHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 390 VVMLMKFFCVNFRVD--LGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQ 464 (500)
Q Consensus 390 ~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 464 (500)
|..=-..+....+.+ +..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-.+.+-- +....|..++
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~l 86 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHH
Confidence 333333444433333 4555666666778889999999999999999999999999988876422 2222555443
No 302
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.18 E-value=0.57 Score=26.33 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=13.1
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHH
Q 041822 208 FAPNNKTMNILLLGFKESGDVTAME 232 (500)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~a~ 232 (500)
.|-|...|+.+...+...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3445555555555555555555543
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.78 E-value=1.8 Score=24.01 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=15.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCC
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHP 134 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 134 (500)
+|..+..++...|++++|+..|++..+..|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344555555555555555555555555433
No 304
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.59 E-value=16 Score=30.93 Aligned_cols=164 Identities=14% Similarity=0.005 Sum_probs=88.2
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRG-FRPSVVTYNI 252 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ 252 (500)
.|.-+.+||.+.--+...|+++.|.+.|+...+-.+....+.-.-.-++.-.|++.-|.+=+...-+.. -.|-...|--
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 455567889888888999999999999999887433333333222223334678887777666655552 2222333333
Q ss_pred HHHHHHhcCChhHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCC------CCHhhHHHHHH
Q 041822 253 RIDGYCKKGCFGDAMRLFE-EMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLK------PDIGAYNAMIS 325 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~li~ 325 (500)
+.. ..-++.+|..-+. +..+ .|..-|...|-.|.- |++.. ..+++++....-. .=..||--+..
T Consensus 175 l~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K 245 (297)
T COG4785 175 LNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGK 245 (297)
T ss_pred HHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 322 3455666654433 3333 244444443333221 22110 1122222221100 01245666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 041822 326 SLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 326 ~~~~~g~~~~a~~~~~~~~~~ 346 (500)
-|...|+.++|..+|+-....
T Consensus 246 ~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 246 YYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHhccccHHHHHHHHHHHHHH
Confidence 777778888888888766654
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.57 E-value=2 Score=23.71 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCC
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHP 134 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 134 (500)
+..+...+...|++++|++.|++..+..|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 44455555555555555555555555443
No 306
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.19 E-value=36 Score=34.37 Aligned_cols=181 Identities=11% Similarity=0.095 Sum_probs=107.9
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHhHHHHH--HH---HHcCCChHHHHHHHHHhHhh---CCCCccHHHHHHHHHHHhcc--
Q 041822 83 GLKALEFFKFTLQHPHFTPTPDAFEKTL--HI---LARMRYFDQAWELMSHVQRT---HPSLLTLKSMSIMLSRISKF-- 152 (500)
Q Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~--~~---~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~-- 152 (500)
...|.++++...... +......+. .. .+...+.+.|...++...+. .-..-.......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 457888888887763 222222222 22 33567899999999998761 00000112344455556553
Q ss_pred --c-cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcC---CCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh--
Q 041822 153 --Q-SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQ---KEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE-- 224 (500)
Q Consensus 153 --g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~-- 224 (500)
. +.+.|...+......+ ++..-..+...+... .+...|.++|....+.. ....+-.+..+|..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGL 374 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCC
Confidence 2 6778999998887764 233333344444332 46789999999988632 33333333333332
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041822 225 --SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVAC 278 (500)
Q Consensus 225 --~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 278 (500)
..+...|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+...|.
T Consensus 375 gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 345689999999999887 3333333334444554 888888877777777663
No 307
>PF13934 ELYS: Nuclear pore complex assembly
Probab=86.94 E-value=20 Score=31.15 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=9.5
Q ss_pred HHHHHHcCCChHHHHHHHHH
Q 041822 109 TLHILARMRYFDQAWELMSH 128 (500)
Q Consensus 109 l~~~~~~~g~~~~a~~~~~~ 128 (500)
++.++...|+.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444444555555444443
No 308
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.77 E-value=6.9 Score=28.20 Aligned_cols=59 Identities=8% Similarity=0.151 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHH
Q 041822 370 GVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLV 429 (500)
Q Consensus 370 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 429 (500)
++.+-+..+....+.|++....+.+++|-+.+++..|.++++..+.+. ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 444555555556667777777777777777777777777777666321 12334555444
No 309
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.68 E-value=1.2 Score=24.40 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=13.3
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhCC
Q 041822 109 TLHILARMRYFDQAWELMSHVQRTHP 134 (500)
Q Consensus 109 l~~~~~~~g~~~~a~~~~~~~~~~~~ 134 (500)
+..++.+.|++++|.+.|+++.+..|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34444445555555555555555444
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.60 E-value=1.8 Score=25.33 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 423 HALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 423 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777788888888888888877754
No 311
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.20 E-value=77 Score=37.23 Aligned_cols=322 Identities=8% Similarity=0.042 Sum_probs=172.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHH-HHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHh
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLH-ILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRIS 150 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (500)
.|.++-.+.+.+.+|+..++.-.....-..-...+..++. .|+..+++|...-+...-.. .| .+...+....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-~~------sl~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-DP------SLYQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-Cc------cHHHHHHHHH
Confidence 4555666788899999999884221100112233444554 89999999988887764221 11 1333444577
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHH-HHHHHhcCCHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNIL-LLGFKESGDVT 229 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l-~~~~~~~~~~~ 229 (500)
..|++..|...|+.+.+. .++....++-++......|.+..+....+....+..+....++++ +.+.-+.++++
T Consensus 1461 ~~g~~~da~~Cye~~~q~-----~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQK-----DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred hhccHHHHHHHHHHhhcC-----CCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchh
Confidence 889999999999999877 356677899999998899999988887776665555555555544 44556788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhc--CChhHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHccC
Q 041822 230 AMEMFYHEMVLRGFRPSVVTYNIR--IDGYCKK--GCFGDAMRLFEEMERVACLP---------SLQTITTLIHGAGLVR 296 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~~~~~~~~~l--i~~~~~~--g~~~~a~~~~~~m~~~~~~~---------~~~~~~~ll~~~~~~~ 296 (500)
..+..+. .. +..+|... .....+. .+.-.-.+..+.+++.-+.| -...|..+++...-..
T Consensus 1536 ~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1536 LLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH
Confidence 8877654 22 33344333 2222222 22111122333333221110 1123333333222111
Q ss_pred CHHHHHHHHHhchh-CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH-HHHC----CCC-CCHHHHHHHHHHHHHcCChh
Q 041822 297 NIHQARQLFDEMPK-RNLKPDIGAYNAMISSLIRCRDLNAAMELMDE-MEEK----RIG-HDNVTYHTMFFGLMKSSGLE 369 (500)
Q Consensus 297 ~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~----~~~-~~~~~~~~li~~~~~~g~~~ 369 (500)
.+...+.+..... .....+.--|..-+..-....+..+-+--+++ +... +.. --...|-...+....+|+++
T Consensus 1609 -l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1609 -LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred -HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 1111111111100 00011111111111111111111111111111 1111 111 12356777778888899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHC
Q 041822 370 GVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR 416 (500)
Q Consensus 370 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 416 (500)
.|...+-...+.+ . +..+.......-..|+...|..++++.++.
T Consensus 1688 ~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9988776666654 2 334555666777889999999999888854
No 312
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.97 E-value=47 Score=34.61 Aligned_cols=221 Identities=11% Similarity=0.072 Sum_probs=110.3
Q ss_pred HcCCCHHHHHHHHHHhhhCCCC-CH-------HhHHHHHHH-HHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 041822 189 CTQKEMKEARSVFVKLLSRFAP-NN-------KTMNILLLG-FKESGDVTAMEMFYHEMVLR----GFRPSVVTYNIRID 255 (500)
Q Consensus 189 ~~~~~~~~A~~~~~~m~~~~~~-~~-------~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~ 255 (500)
....++++|..+..+.....++ +. ..|+.+-.. ....|+++.+.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567888888888887752222 11 123333222 23457778877776665544 22344556667777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHH---HHH--HHHHccCC--HHHHHHHHHhchhCC---C---CCCHhhHHH
Q 041822 256 GYCKKGCFGDAMRLFEEMERVACLPSLQTIT---TLI--HGAGLVRN--IHQARQLFDEMPKRN---L---KPDIGAYNA 322 (500)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---~ll--~~~~~~~~--~~~a~~~~~~~~~~~---~---~~~~~~~~~ 322 (500)
+..-.|++++|..+..+..+..-.-+...+. .+. ..+...|+ ..+....|....... . .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7777888888888877665532122333322 222 22445553 222333333322210 0 112334455
Q ss_pred HHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHHHhCCC----CCCHHHHHH
Q 041822 323 MISSLIRCRDLNAAMEL----MDEMEEKRIGHDNVT--YHTMFFGLMKSSGLEGVCKLYDRMIEGKF----VPKTRTVVM 392 (500)
Q Consensus 323 li~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~p~~~~~~~ 392 (500)
+..++.+ .+.+..- ++--......|-... +..|+......|+.++|...+.++..... .++..+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555554 3333222 222222222221121 22566777788999999888888764322 222222222
Q ss_pred HHHH--HHHcCCHhhHHHHHHH
Q 041822 393 LMKF--FCVNFRVDLGLNLWGY 412 (500)
Q Consensus 393 ll~~--~~~~~~~~~a~~~~~~ 412 (500)
.+.. ....|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 2222 2345777766665544
No 313
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.52 E-value=26 Score=31.24 Aligned_cols=41 Identities=15% Similarity=-0.003 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041822 229 TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFE 271 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (500)
.+|+++|..+++.. --..+-+.++.++....+..+|...+.
T Consensus 150 ~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 150 RKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHH
Confidence 46777777666551 123334445555555555555554443
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.44 E-value=2.3 Score=24.78 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 248 VTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666666667777777776666543
No 315
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.42 E-value=12 Score=27.31 Aligned_cols=60 Identities=7% Similarity=0.105 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHH
Q 041822 370 GVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVT 430 (500)
Q Consensus 370 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 430 (500)
+..+-+..+....+.|++....+.+++|-+.+++..|.++++..+.. ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45556666667778889888999999999999999999999888754 1223336766654
No 316
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.37 E-value=38 Score=32.91 Aligned_cols=168 Identities=11% Similarity=0.131 Sum_probs=97.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 041822 207 RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTIT 286 (500)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 286 (500)
+.+.|.....+++..+..+..+.-++.+-.+|...| -+...|..++.+|..+ ..++-..+++++.+..+ |.....
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ 135 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIG 135 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHH
Confidence 445566677777777777777777777777777765 2566677777777766 55666777777776542 333333
Q ss_pred HHHHHHHccCCHHHHHHHHHhchhCCCCC--C---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 041822 287 TLIHGAGLVRNIHQARQLFDEMPKRNLKP--D---IGAYNAMISSLIRCRDLNAAMELMDEMEEK-RIGHDNVTYHTMFF 360 (500)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~ 360 (500)
--+..+...++.+.+..+|..+...=++- + ...|..++..- ..+.|....+..++... |...-.+.+.-+-.
T Consensus 136 ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 136 RELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 33333333467777777776665542210 0 11333333211 24555555655555543 33333444455555
Q ss_pred HHHHcCChhHHHHHHHHHHhC
Q 041822 361 GLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~ 381 (500)
-|....++.+|++++..+.+.
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 214 KYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HhccccCHHHHHHHHHHHhhh
Confidence 666667777777777766654
No 317
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.21 E-value=2.8 Score=23.18 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444555555555555555555444
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.02 E-value=16 Score=30.64 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=49.6
Q ss_pred HcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCC
Q 041822 114 ARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKE 193 (500)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 193 (500)
.+.|+ +.|.+.|-.+... |...+......+...| ...+.+++..++.+.......+ ..+|+..+.+|+..+.+.|+
T Consensus 118 sr~~d-~~A~~~fL~~E~~-~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~-~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGT-PELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPD-DNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hccCc-HHHHHHHHHHcCC-CCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHhcc
Confidence 44444 5566666555543 2344444444444444 3667777777777666544322 47788888888888888888
Q ss_pred HHHHH
Q 041822 194 MKEAR 198 (500)
Q Consensus 194 ~~~A~ 198 (500)
.+.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 77774
No 319
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.73 E-value=0.61 Score=37.11 Aligned_cols=53 Identities=9% Similarity=0.182 Sum_probs=24.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFE 271 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (500)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444444445555555555544333344555555555555544444444444
No 320
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.66 E-value=7 Score=33.07 Aligned_cols=72 Identities=10% Similarity=0.096 Sum_probs=43.3
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh---CCCCCHHhHHHHHHH
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS---RFAPNNKTMNILLLG 221 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~~~~l~~~ 221 (500)
.++.+.+.++..+|+...+.-.+. .|.|...-..+++.+|-.|+|++|..-++-.-. ...+-..+|..+|.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVka-----kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKA-----KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc-----CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344455666667776666655554 355666667777777777777777665554432 344455566666554
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.56 E-value=8 Score=32.72 Aligned_cols=77 Identities=8% Similarity=-0.015 Sum_probs=52.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR--GFRPSVVTYNIRIDG 256 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~ 256 (500)
+.+..++.+.+.+...+|+....+-++..|.|..+-..+++.+|-.|+|++|..-++...+. ...+....|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556667777888888888877777656667777788888888888888887776665544 223345556666554
No 322
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.52 E-value=39 Score=32.42 Aligned_cols=123 Identities=11% Similarity=0.051 Sum_probs=84.7
Q ss_pred HHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcC
Q 041822 112 ILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQ 191 (500)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 191 (500)
--...|++..|.+-+....+..|..++...+... .+...|.++.+...+....+. ......+...+++...+.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-----~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-----IGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-----hcCCchHHHHHHHhhhch
Confidence 3345678777776666666666665554433333 366789999998888776654 345667788899999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 192 KEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 192 ~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
|+++.|...-.-|+..-..+...........-..|-++++...|+++...
T Consensus 371 ~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 99999999988888643445555444444445566778888888777654
No 323
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.46 E-value=13 Score=33.08 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEM 238 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 238 (500)
+...+.|..+|.+.+|.++.+....-.+.+...+..++..+...||--.+.+.++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334444555555555555555555444445555555555555555544444444443
No 324
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.39 E-value=93 Score=36.62 Aligned_cols=317 Identities=8% Similarity=0.039 Sum_probs=168.0
Q ss_pred HHHHHcCCChHHHHHHHHHhHhhC-CCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHH
Q 041822 110 LHILARMRYFDQAWELMSHVQRTH-PSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAF 188 (500)
Q Consensus 110 ~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 188 (500)
..+--+++.+.+|.-.++.-.... +.......+..+-..|+..+++|....+...-.. +. ....-|-..
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---------~~-sl~~qil~~ 1459 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---------DP-SLYQQILEH 1459 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---------Cc-cHHHHHHHH
Confidence 334457788888888888742211 1222222333344488999999888777663111 11 234455566
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHHH
Q 041822 189 CTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIR-IDGYCKKGCFGDAM 267 (500)
Q Consensus 189 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~a~ 267 (500)
...|+|..|...|+.+.+..++...+++-+++.....|.++.+....+..... ..+....++.+ +.+--+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 77899999999999999866777888888888888888888777655544433 22233333333 33446678887776
Q ss_pred HHHHHHHHcCCCCCHHHHHHH--HHHHHcc--CCHHHHHHHHHhchhC--------CCC-CCHhhHHHHHHHHHhcCCHH
Q 041822 268 RLFEEMERVACLPSLQTITTL--IHGAGLV--RNIHQARQLFDEMPKR--------NLK-PDIGAYNAMISSLIRCRDLN 334 (500)
Q Consensus 268 ~~~~~m~~~~~~~~~~~~~~l--l~~~~~~--~~~~~a~~~~~~~~~~--------~~~-~~~~~~~~li~~~~~~g~~~ 334 (500)
.... .. +..+|... .....+. .|.-...+..+-+.+. +.. .=...|..++....-+.--.
T Consensus 1539 ~~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1539 SYLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hhhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 6655 11 22223222 2222221 2211111222222221 111 01123444444333222111
Q ss_pred HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCChhHHHHH---HHH-HHhCCCCCC-----HHHHHHHHHHHHHcCCHh
Q 041822 335 AAMELMDEMEE-KRIGHDNVTYHTMFFGLMKSSGLEGVCKL---YDR-MIEGKFVPK-----TRTVVMLMKFFCVNFRVD 404 (500)
Q Consensus 335 ~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~---~~~-~~~~~~~p~-----~~~~~~ll~~~~~~~~~~ 404 (500)
....++ .... .....+...|-.-+. +.+....+.+- +++ +......|+ ..+|....+.+-..|.++
T Consensus 1612 ~~~~l~-~~s~~~~s~~~sd~W~~Rl~---~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1612 SIEELK-KVSYDEDSANNSDNWKNRLE---RTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHhh-ccCccccccccchhHHHHHH---HhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 111111 1110 011111112222221 11111112221 111 111111222 567777777778899999
Q ss_pred hHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 405 LGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 405 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
.|...+-...+.+ .| ..+-....-+...|+...|+.++++..+.
T Consensus 1688 ~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9998888777765 33 35556778889999999999999998864
No 325
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.26 E-value=8.8 Score=27.67 Aligned_cols=62 Identities=6% Similarity=-0.032 Sum_probs=43.8
Q ss_pred CHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 402 RVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQ 464 (500)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 464 (500)
+.-+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-.+.+. ..+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 344556666777777888888888889999999999999999888776432 11334554443
No 326
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.97 E-value=44 Score=32.50 Aligned_cols=94 Identities=9% Similarity=-0.015 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHH
Q 041822 246 SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325 (500)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 325 (500)
|.....+++..+..+.++.-...+..+|...| -+-..|-.++.+|... ..++-..+|+++.+..+. |...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44444455555555555555555555555544 3444555555555554 444445555555554332 2222222222
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 041822 326 SLIRCRDLNAAMELMDEME 344 (500)
Q Consensus 326 ~~~~~g~~~~a~~~~~~~~ 344 (500)
-|- .++...+...|..+.
T Consensus 141 ~yE-kik~sk~a~~f~Ka~ 158 (711)
T COG1747 141 KYE-KIKKSKAAEFFGKAL 158 (711)
T ss_pred HHH-HhchhhHHHHHHHHH
Confidence 222 244444444444443
No 327
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.92 E-value=3.2 Score=22.83 Aligned_cols=28 Identities=29% Similarity=0.256 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 424 ALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
.|..+...|.+.|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566777888888888888888887653
No 328
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.78 E-value=32 Score=30.78 Aligned_cols=136 Identities=10% Similarity=0.100 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHc-C-ChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHhhHHH
Q 041822 333 LNAAMELMDEMEE-KRIGHDNVTYHTMFFGLMKS-S-GLEGVCKLYDRMIE-GKFVPKTRTVVMLMKFFCVNFRVDLGLN 408 (500)
Q Consensus 333 ~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~-g-~~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 408 (500)
+.+|.++|+.... ..+--|......+++..... + ....-.++.+-+.. .+-.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4555566552211 12223555556666655542 1 12222233333332 2346777778888888888888888888
Q ss_pred HHHHHHHC-CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH-----HHcCCCCCHHHHHHHHHHHH
Q 041822 409 LWGYLIDR-GFCPHGHALDLLVTGLCSRGRWEEAFECSKQM-----LVRRRQVSEASYRMLQRYLV 468 (500)
Q Consensus 409 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~~~~~~~~~~~~l~~~~~ 468 (500)
+|+..... +...|...|..+|+...+.|+..-..+++++- .+.++..+...-..+-+.+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 88877765 56667888888888888888876666665542 23355555555444444443
No 329
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.52 E-value=31 Score=30.38 Aligned_cols=228 Identities=14% Similarity=0.206 Sum_probs=106.3
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccc-cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh--CCCCCH----HhH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGI-RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS--RFAPNN----KTM 215 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~~~~~~----~~~ 215 (500)
-.++..+-+.|++++....+.++....-..+ ...+..+.|+++.......+.+.-...|+.-++ ...-|. .|-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 3344444455555555554444432110000 122334556666655555555554444443332 111111 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC----C-------CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHH
Q 041822 216 NILLLGFKESGDVTAMEMFYHEMVLRGFR----P-------SVVTYNIRIDGYCKKGCFGDAMRLFEEMER-VACLPSLQ 283 (500)
Q Consensus 216 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~----~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~ 283 (500)
.-|.+.|...+++....+++.++.+.-.. . =...|..=|..|....+-.+...+|++... ..-.|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 45566677777777777777776543110 0 134566666777766666666677776543 12234444
Q ss_pred HHHHHHH----HHHccCCHHHHHH-HHHhc---hhCCCCCCHhh---HHHHHHHHHhcCCHHHHHHHHH--HHHHCCCCC
Q 041822 284 TITTLIH----GAGLVRNIHQARQ-LFDEM---PKRNLKPDIGA---YNAMISSLIRCRDLNAAMELMD--EMEEKRIGH 350 (500)
Q Consensus 284 ~~~~ll~----~~~~~~~~~~a~~-~~~~~---~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~--~~~~~~~~~ 350 (500)
....+-. ...+.|++++|.. +|+.. .+.| .|...+ |..|..++.+.|-- -|+ +.+--.-.|
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdP 302 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDP 302 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCH
Confidence 4433322 1245566766653 33333 3334 233222 34444444444310 011 011112234
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 041822 351 DNVTYHTMFFGLMKSSGLEGVCKLYDR 377 (500)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (500)
.....+.++.+|.. ++..+-.+++..
T Consensus 303 EIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 303 EILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 55667777777744 455555555443
No 330
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.96 E-value=11 Score=33.32 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=75.6
Q ss_pred HHHhhcCChHHHHHHHHHhhcCC----CCCCCHH--------hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHH
Q 041822 75 RLFAAHSNGLKALEFFKFTLQHP----HFTPTPD--------AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSM 142 (500)
Q Consensus 75 ~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~--------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (500)
..+--+.|+..|++..++..+.- ....+.. ....-|.+++..+++.++....-+.-+. |......++
T Consensus 43 d~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~-pEklPpkIl 121 (309)
T PF07163_consen 43 DLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV-PEKLPPKIL 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC-cccCCHHHH
Confidence 33444667888888877765521 0111111 1234567888888888888877666552 344555667
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc-----CCCHHHHHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT-----QKEMKEARSVF 201 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~A~~~~ 201 (500)
..-|-.|.+.+++..+.++-..-...- ...+..-|.+++..|.. .|.+++|+++.
T Consensus 122 eLCILLysKv~Ep~amlev~~~WL~~p----~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 122 ELCILLYSKVQEPAAMLEVASAWLQDP----SNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhCc----ccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 777777888888888888776655432 12233346666655544 47777777765
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.38 E-value=15 Score=30.80 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHccCCHHH
Q 041822 281 SLQTITTLIHGAGLVRNIHQ 300 (500)
Q Consensus 281 ~~~~~~~ll~~~~~~~~~~~ 300 (500)
|+..+..|...+.+.|+++.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 33344444444444444333
No 332
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.03 E-value=18 Score=31.98 Aligned_cols=57 Identities=7% Similarity=-0.070 Sum_probs=25.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 219 LLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
|.++++.++|.++..+.-+.-+.--+.-..+...-|-.|.|.|.+..+.++-..-.+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 455555555555554443333321111222333333445555555555555444443
No 333
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.84 E-value=0.68 Score=36.81 Aligned_cols=54 Identities=7% Similarity=0.004 Sum_probs=31.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFD 306 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 306 (500)
++..+.+.+.+....++++.+...+...+....+.++..|++.++.+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344455556666666666666655544556666666666666665566555555
No 334
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.45 E-value=48 Score=31.18 Aligned_cols=62 Identities=8% Similarity=-0.025 Sum_probs=43.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhh---CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLS---RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
.+.-+...|..+|+++.|++.|.+..+ ..+-.+..|-.+|..-.-.|+|..+..+..+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 466777888888999999888888664 22334556666777777778887766666655543
No 335
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.31 E-value=26 Score=29.33 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=10.7
Q ss_pred HHHHcCCCHHHHHHHHHHhhh
Q 041822 186 QAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~ 206 (500)
.+|.+...+++|+.-|..+.+
T Consensus 176 eayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHH
Confidence 345555555555555555544
No 336
>PRK09687 putative lyase; Provisional
Probab=79.99 E-value=46 Score=30.06 Aligned_cols=201 Identities=11% Similarity=0.054 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH-----HHHHHHHHhchhCCCCCC
Q 041822 246 SVVTYNIRIDGYCKKGCF----GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNI-----HQARQLFDEMPKRNLKPD 316 (500)
Q Consensus 246 ~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~ 316 (500)
|...-...+.+++..|+. +++...+..+.... ++...-...+.+++..+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444444455555555542 34555555553332 4444444444444443321 122333323222 224
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041822 317 IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSS-GLEGVCKLYDRMIEGKFVPKTRTVVMLMK 395 (500)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 395 (500)
..+-...+.++.+.++ +++...+-.+.+. +|...-...+.++.+.+ +...+...+..+.. .++...-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 5555566666666665 3455555555443 24444444455555442 23455555555553 345555556666
Q ss_pred HHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041822 396 FFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYL 467 (500)
Q Consensus 396 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 467 (500)
++.+.|+. .+...+-...+.+ + .....+.++...|.. +|...+..+.+. .+|..+-...+.+|
T Consensus 215 aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 77776663 4454444444433 2 233566777777774 577777777643 23555544444444
No 337
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=79.55 E-value=17 Score=26.07 Aligned_cols=56 Identities=11% Similarity=0.016 Sum_probs=37.3
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccH
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSY 155 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (500)
|-|...--.+...+...|++++|.+.+-.+.+..+...+...-..++..+.-.|.-
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 45667777888888999999999998888888766554545555566555555543
No 338
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.42 E-value=5.7 Score=21.82 Aligned_cols=27 Identities=30% Similarity=0.178 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 424 ALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677777888888888888877764
No 339
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.34 E-value=97 Score=32.91 Aligned_cols=28 Identities=25% Similarity=0.441 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
.|..|+..|...|+.++|++++.+..+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4778888899999999999999888763
No 340
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.21 E-value=6 Score=23.81 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=13.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
No 341
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=77.81 E-value=61 Score=30.24 Aligned_cols=67 Identities=7% Similarity=-0.038 Sum_probs=50.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041822 210 PNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRP---SVVTYNIRIDGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
....+|..+.+.+.+.|.++.|...+..+.+.+... .....-.-++..-..|+..+|+..++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455678888899999999999999988888754221 3344455567777889999999988887773
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.57 E-value=3.7 Score=21.23 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=11.2
Q ss_pred HHHHHHhcCCCHHHHHHHHH
Q 041822 427 LLVTGLCSRGRWEEAFECSK 446 (500)
Q Consensus 427 ~li~~~~~~g~~~~A~~~~~ 446 (500)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 44555555666666655554
No 343
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.34 E-value=42 Score=28.10 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=51.0
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 041822 360 FGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVV-----MLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS 434 (500)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 434 (500)
..+...|++++|...++..... |....+. .|.+.....|.++.|...++...+.++. ......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 4456667777777777665532 2222222 2334455667777777777666554422 2233344566777
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 041822 435 RGRWEEAFECSKQMLVRR 452 (500)
Q Consensus 435 ~g~~~~A~~~~~~m~~~~ 452 (500)
.|+-++|..-|++..+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 777777777777777654
No 344
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.15 E-value=6 Score=23.82 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=12.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH
Q 041822 428 LVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 428 li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 345
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.83 E-value=95 Score=33.68 Aligned_cols=130 Identities=8% Similarity=-0.011 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHH
Q 041822 140 KSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILL 219 (500)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~ 219 (500)
..|...++.+-+.+..+.+.++-....+.-... .|--..+++.+.+.....|.+-+|...+-+-.. ......+...++
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd-~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd-serrrdcLRqlv 1061 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDD-NPSVALISTTVFNHHLDLGHWFQAYKAILRNPD-SERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc-HHHHHHHHHHHH
Confidence 446667777777777777777665554442110 122234567778888888888887766554321 111224455666
Q ss_pred HHHHhcCCHH------------HHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041822 220 LGFKESGDVT------------AMEM-FYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFE 271 (500)
Q Consensus 220 ~~~~~~~~~~------------~a~~-~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (500)
-..+..|.++ +... +++...+...-.....|+.|-..+...+++.+|-.+.-
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 6666666654 3333 22222222112223346656666677888888765543
No 346
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.70 E-value=10 Score=31.89 Aligned_cols=56 Identities=13% Similarity=0.213 Sum_probs=45.8
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCC
Q 041822 79 AHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHP 134 (500)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 134 (500)
..++.+......+|+.+.-...|++..|..++.++...|+.++|.++.+++....|
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 55666666666666666445579999999999999999999999999999998876
No 347
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.33 E-value=50 Score=28.54 Aligned_cols=23 Identities=0% Similarity=-0.003 Sum_probs=13.7
Q ss_pred HHcCCHhhHHHHHHHHHHCCCCC
Q 041822 398 CVNFRVDLGLNLWGYLIDRGFCP 420 (500)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~ 420 (500)
...+++.+|..+|++.....+..
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 44566667777777666544433
No 348
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.27 E-value=3.1 Score=22.66 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=10.9
Q ss_pred HHHHHhccccHHHHHHHHHHHHH
Q 041822 145 MLSRISKFQSYEETLEAFDRMER 167 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~ 167 (500)
+..++.+.|++++|.+.|+++..
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444555555555544443
No 349
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.15 E-value=6.3 Score=21.64 Aligned_cols=26 Identities=12% Similarity=0.242 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHh
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQR 131 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 131 (500)
|..+...+...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444444444444444443
No 350
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.51 E-value=12 Score=23.05 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=22.1
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041822 433 CSRGRWEEAFECSKQMLVRRRQVSEASYRMLQR 465 (500)
Q Consensus 433 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 465 (500)
.+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777777777766655543
No 351
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=75.29 E-value=69 Score=29.63 Aligned_cols=117 Identities=12% Similarity=0.017 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh---cCCHHHHH
Q 041822 156 EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE---SGDVTAME 232 (500)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~---~~~~~~a~ 232 (500)
+.-+.++++..+. .+.+...+...|..+.+..+.+...+.++++....+-+...|...+..... .-.++.+.
T Consensus 48 E~klsilerAL~~-----np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 48 ERKLSILERALKH-----NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 3444555555544 245666667777777777777777777777776555566666666665543 22345555
Q ss_pred HHHHHHHHC------CC----CCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 233 MFYHEMVLR------GF----RPSV-------VTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 233 ~~~~~~~~~------g~----~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
.+|.+..+. |. .+-. ..+..+......+|..+.|..+++.+.+.+
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 555544332 11 0001 112222233345666666666666666644
No 352
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.06 E-value=49 Score=27.82 Aligned_cols=90 Identities=9% Similarity=0.042 Sum_probs=58.7
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041822 187 AFCTQKEMKEARSVFVKLLSRFAPNN-----KTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 261 (500)
-+.+.|++++|..-|...++-+++.. ..|..-..++.+.+.++.|..--...++.+.. .......-..+|-+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 45678888888888888887555433 34455556677778888877766666665321 1112222244677778
Q ss_pred ChhHHHHHHHHHHHcC
Q 041822 262 CFGDAMRLFEEMERVA 277 (500)
Q Consensus 262 ~~~~a~~~~~~m~~~~ 277 (500)
++++|++-|.++....
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 8888888888887764
No 353
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=74.20 E-value=18 Score=32.93 Aligned_cols=48 Identities=10% Similarity=-0.009 Sum_probs=20.9
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHhhHHHHHH
Q 041822 362 LMKSSGLEGVCKLYDRMIEGKFVP-KTRTVVMLMKFFCVNFRVDLGLNLWG 411 (500)
Q Consensus 362 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 411 (500)
|.+.|.+++|++.|...+.. .| |++++..-..+|.+..++..|+.=..
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 34445555555555443332 23 34444444444444444444443333
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.65 E-value=67 Score=28.68 Aligned_cols=150 Identities=13% Similarity=0.128 Sum_probs=70.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHHcCChhHHHHHHHHHHh---CCCCCC-HHHHHHHHHH
Q 041822 328 IRCRDLNAAMELMDEMEEKRIGHDNVT-------YHTMFFGLMKSSGLEGVCKLYDRMIE---GKFVPK-TRTVVMLMKF 396 (500)
Q Consensus 328 ~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~p~-~~~~~~ll~~ 396 (500)
.+.+++++|+..+.++..+|+..|..+ ..-+...|...|+....-++.....+ .-.+|. ......++.-
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiek 93 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEK 93 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHh
Confidence 344555555555555555555444332 22344555666655544443332211 101121 2333344444
Q ss_pred HHHc-CCHhhHHHHHHHHHHCCCCCC-----HhHHHHHHHHHhcCCCHHHHHHHHHHH----HHcCCCCCHHHHHHH-HH
Q 041822 397 FCVN-FRVDLGLNLWGYLIDRGFCPH-----GHALDLLVTGLCSRGRWEEAFECSKQM----LVRRRQVSEASYRML-QR 465 (500)
Q Consensus 397 ~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~l-~~ 465 (500)
+... ..++.-..+....++...+-+ ...-.-++..+.+.|.+.+|+.+++.. .+..-+|+..+...+ -.
T Consensus 94 f~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESK 173 (421)
T COG5159 94 FPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESK 173 (421)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHH
Confidence 3222 334444444444443211111 112235788889999999999876654 334555665554333 23
Q ss_pred HHHHcCchhHHH
Q 041822 466 YLVQANANEKLE 477 (500)
Q Consensus 466 ~~~~~~~~~~~~ 477 (500)
+|..-+....+.
T Consensus 174 vyh~irnv~Ksk 185 (421)
T COG5159 174 VYHEIRNVSKSK 185 (421)
T ss_pred HHHHHHhhhhhh
Confidence 444444443333
No 355
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=73.61 E-value=1.1e+02 Score=31.11 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhcC-CCCCCCCchhhhhhCCCCCCCCh-HHHHHHHHHHHhhcCChHHHHHHHHHh
Q 041822 30 SSEIERITRIINDH-PFPDQPLHPTLLQHLPQTTPLSS-TLVENVLGRLFAAHSNGLKALEFFKFT 93 (500)
Q Consensus 30 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 93 (500)
.+..+.+..+++.. ..|.. ......+....|... +.+|+.+.+ +.-.|..+.|.+++...
T Consensus 113 ~~v~~~Ll~WvNr~~~~~~~---~~~~~vl~~~~p~~~~p~FW~~v~~-lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 113 GPVPEQLLDWVNRFHFPPSE---ELAEEVLSSEPPYEHDPDFWDYVQR-LVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHHHHHHHHHTTS--SHH---HHHTTSCSS-HSCSGSHHHHHHHHH-HHHTT-HHHHHHHH-TT
T ss_pred CchHHHHHHHHHHhCCCCch---hHHHHHhccCCCCccchhHHHHHHH-HHHcCCHHHHHHHHHhc
Confidence 45677788888443 32221 111222222334444 788886544 56789999999998443
No 356
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=73.23 E-value=14 Score=33.67 Aligned_cols=81 Identities=12% Similarity=0.070 Sum_probs=56.7
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccc
Q 041822 74 GRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQ 153 (500)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 153 (500)
..-|.++|.+++|++.|....... +.++.++.....+|.+..+|..|..=.+.....+ ...+.+|.+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd---------~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD---------KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh---------HHHHHHHHHHH
Confidence 456778999999999999988753 5689999999999999988887776666555431 22345566555
Q ss_pred cHHHHHHHHHHH
Q 041822 154 SYEETLEAFDRM 165 (500)
Q Consensus 154 ~~~~a~~~~~~~ 165 (500)
....++....+.
T Consensus 173 ~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 173 QARESLGNNMEA 184 (536)
T ss_pred HHHHHHhhHHHH
Confidence 554444444443
No 357
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=73.14 E-value=45 Score=26.46 Aligned_cols=24 Identities=13% Similarity=0.325 Sum_probs=13.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHH
Q 041822 355 YHTMFFGLMKSSGLEGVCKLYDRM 378 (500)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~~ 378 (500)
.|+++...+..+++...+.+++.+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHH
Confidence 455555555555555555555554
No 358
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=72.23 E-value=47 Score=26.33 Aligned_cols=98 Identities=7% Similarity=0.040 Sum_probs=71.4
Q ss_pred HhCCCCCCH--HHHHHHHHHHHHcCCHhhHHHHHHHHHHCC---C--CCCHhHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Q 041822 379 IEGKFVPKT--RTVVMLMKFFCVNFRVDLGLNLWGYLIDRG---F--CPHGHALDLLVTGLCSRGR-WEEAFECSKQMLV 450 (500)
Q Consensus 379 ~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 450 (500)
.+.+..++. ..++.++.-....+++.....+++.+.... + ..+...|.+++.+..+..- ---+..+|+-|.+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 344445543 345677777777788888888887775321 0 2355689999999977766 4567788899988
Q ss_pred cCCCCCHHHHHHHHHHHHHcCchhHH
Q 041822 451 RRRQVSEASYRMLQRYLVQANANEKL 476 (500)
Q Consensus 451 ~~~~~~~~~~~~l~~~~~~~~~~~~~ 476 (500)
.+.+++..-|..++.++.++...+..
T Consensus 109 ~~~~~t~~dy~~li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRGYFHDSL 134 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCCcch
Confidence 88999999999999999988666554
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.19 E-value=12 Score=25.87 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=21.8
Q ss_pred HcCCHhhHHHHHHHHHHCCCCCC--HhHHHHHHHHHhcCCCHHHHHHH
Q 041822 399 VNFRVDLGLNLWGYLIDRGFCPH--GHALDLLVTGLCSRGRWEEAFEC 444 (500)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~ 444 (500)
...+.++|+..|...++.-..+. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555554322221 13444555555555555555444
No 360
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.59 E-value=19 Score=22.72 Aligned_cols=36 Identities=8% Similarity=0.043 Sum_probs=24.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
.+.-++.+.|++++|.+..+.+.+..|+......+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 455567788888888888888888877765444433
No 361
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.54 E-value=67 Score=27.82 Aligned_cols=19 Identities=16% Similarity=0.464 Sum_probs=11.0
Q ss_pred hcCChhHHHHHHHHHHHcC
Q 041822 259 KKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~~ 277 (500)
..+++.+|+++|++.....
T Consensus 166 ~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4456666666666655543
No 362
>PRK10941 hypothetical protein; Provisional
Probab=70.61 E-value=59 Score=29.09 Aligned_cols=80 Identities=8% Similarity=-0.024 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLL 185 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll 185 (500)
.+.+-.++.+.++++.|.++.+.+....|+.+ .-+..-.-.|.+.|.+..|..-++...+... ..|+.......+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp--~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P---~dp~a~~ik~ql 258 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDP--YEIRDRGLIYAQLDCEHVALSDLSYFVEQCP---EDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC---CchhHHHHHHHH
Confidence 34555566777777777777777777666533 2233334447777777777777776655532 456666666665
Q ss_pred HHHHc
Q 041822 186 QAFCT 190 (500)
Q Consensus 186 ~~~~~ 190 (500)
...-+
T Consensus 259 ~~l~~ 263 (269)
T PRK10941 259 HSIEQ 263 (269)
T ss_pred HHHhh
Confidence 55543
No 363
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=70.14 E-value=44 Score=27.60 Aligned_cols=95 Identities=14% Similarity=0.198 Sum_probs=42.5
Q ss_pred CCChhhHHHHHHHH---HcCCCHHHHHHHHHHhhh------CCCCC-HHhHHHHHHHHHhcCC-----------HHHHHH
Q 041822 175 KFGSEEFNVLLQAF---CTQKEMKEARSVFVKLLS------RFAPN-NKTMNILLLGFKESGD-----------VTAMEM 233 (500)
Q Consensus 175 ~~~~~~~~~ll~~~---~~~~~~~~A~~~~~~m~~------~~~~~-~~~~~~l~~~~~~~~~-----------~~~a~~ 233 (500)
|.|...++.-..++ ++.....++.+++++..+ .+.|+ ..++..+..++...+. +++|..
T Consensus 22 P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 22 PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATE 101 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 45555444333333 333343445455544442 13343 4666666666654332 233444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 234 FYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 234 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
.|+...+. .|+..+|+.-+.... +|-++..++.+.+
T Consensus 102 ~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 102 YFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 44444433 566666666665542 3444555554443
No 364
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.73 E-value=14 Score=24.22 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 228 VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 228 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
++.+.++++.+... +.|-.-.-.+|.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444444432 22333444566677777777777777666654
No 365
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=69.35 E-value=64 Score=26.67 Aligned_cols=65 Identities=8% Similarity=0.044 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcC---CC-------hHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 84 LKALEFFKFTLQHPHFTPTPDAFEKTLHILARM---RY-------FDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
+.|.+-++.....+ |.|...++.-..++... .+ +++|+.-|++.....|+.. .++-.+..+|...
T Consensus 8 E~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h--dAlw~lGnA~ts~ 82 (186)
T PF06552_consen 8 EHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH--DALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHHH
Confidence 44555555544432 56666655544444332 22 3445555555566666543 3444555544433
No 366
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.20 E-value=43 Score=25.68 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHH
Q 041822 371 VCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLV 429 (500)
Q Consensus 371 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 429 (500)
..+-+..+...++.|++.....-+++|-+.+++..|.++|+-.+.. +.+...+|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 4444555556677788888888888888888888888888777653 223333454444
No 367
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.19 E-value=1.1e+02 Score=29.40 Aligned_cols=8 Identities=13% Similarity=0.189 Sum_probs=3.3
Q ss_pred HhcCChhH
Q 041822 258 CKKGCFGD 265 (500)
Q Consensus 258 ~~~g~~~~ 265 (500)
+..|+.+.
T Consensus 76 ~~~g~~~~ 83 (413)
T PHA02875 76 VEEGDVKA 83 (413)
T ss_pred HHCCCHHH
Confidence 33444433
No 368
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.04 E-value=1.4e+02 Score=30.60 Aligned_cols=133 Identities=12% Similarity=0.155 Sum_probs=68.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCC-CCCCCHHh--HHHH-HHHHHcCCChHHHHHHHHHhHhhCC--CCccHHHHHHH
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHP-HFTPTPDA--FEKT-LHILARMRYFDQAWELMSHVQRTHP--SLLTLKSMSIM 145 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~--~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l 145 (500)
++++++.+.+... |+...+...+.. +...+... |..+ +..+...+++..|.+.++.+..... ..+....+..+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 4556555554444 888887766532 11222222 2222 2223233788888888888876431 22222233333
Q ss_pred HHH--HhccccHHHHHHHHHHHHHHHhc-----cccCCChhhHHHHHHHH--HcCCCHHHHHHHHHHhh
Q 041822 146 LSR--ISKFQSYEETLEAFDRMEREIFV-----GIRKFGSEEFNVLLQAF--CTQKEMKEARSVFVKLL 205 (500)
Q Consensus 146 ~~~--~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~ll~~~--~~~~~~~~A~~~~~~m~ 205 (500)
+.+ ..+.+..+++.+.++++...... ...+|...+|..+++.+ ...|+++.+.+.++++.
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 332 33456667777777766433210 00233455666666654 44677667666666554
No 369
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=68.05 E-value=1.3e+02 Score=29.90 Aligned_cols=380 Identities=11% Similarity=0.055 Sum_probs=194.3
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHH-hccccHHHHHH
Q 041822 82 NGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRI-SKFQSYEETLE 160 (500)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~ 160 (500)
+.+.+...+..++.. +|.-..-|......=.+.|..+.+.++|++....-| .+...|......+ ...|+.+...+
T Consensus 60 ~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip--~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 60 DVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP--LSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred HHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhccCCCHHHHHH
Confidence 334555666666654 344444567777777888999999999999887544 3444555544433 34577777777
Q ss_pred HHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHH---hc------CCHHHH
Q 041822 161 AFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFK---ES------GDVTAM 231 (500)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~---~~------~~~~~a 231 (500)
.|++..... |..-.+...|...|.--...+++.....++++.++- ...-|+....-|. +. ...+.+
T Consensus 136 ~fe~A~~~v--G~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~ 210 (577)
T KOG1258|consen 136 LFERAKSYV--GLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PLHQLNRHFDRFKQLLNQNEEKILLSIDEL 210 (577)
T ss_pred HHHHHHHhc--ccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hhhHhHHHHHHHHHHHhcCChhhhcCHHHH
Confidence 887766542 433445567888888888888999999999988862 2222222222222 11 112233
Q ss_pred HHHHHHHHHC---C-CCCCHHHHHHHHH-------------------------HHHhcCChhHHHHHHHHHHHcC-----
Q 041822 232 EMFYHEMVLR---G-FRPSVVTYNIRID-------------------------GYCKKGCFGDAMRLFEEMERVA----- 277 (500)
Q Consensus 232 ~~~~~~~~~~---g-~~~~~~~~~~li~-------------------------~~~~~g~~~~a~~~~~~m~~~~----- 277 (500)
.++-.....+ + ..+....+..-++ ++-..-...+....|+.-.++-
T Consensus 211 ~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvk 290 (577)
T KOG1258|consen 211 IQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVK 290 (577)
T ss_pred HHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccC
Confidence 2222211110 0 0001111111110 1111111111222222222111
Q ss_pred --CCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHH
Q 041822 278 --CLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIG--HDNV 353 (500)
Q Consensus 278 --~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~ 353 (500)
..++..+|..-+.--...|+.+.+.-+|+...-. +..=...|-..+.-....|+.+-|..++....+--++ |...
T Consensus 291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~ 369 (577)
T KOG1258|consen 291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIH 369 (577)
T ss_pred cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHH
Confidence 1233456666666667777777777777665442 1112233444444444457777777666554443222 2222
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHhhHH---HHHHHHHHCCCCCCHhHHHHHH
Q 041822 354 TYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTR-TVVMLMKFFCVNFRVDLGL---NLWGYLIDRGFCPHGHALDLLV 429 (500)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~li 429 (500)
.+.+.+ .-..|++..|..+++...+.- |+.. .-..-+....+.|+.+.+. +++....+.. -+..+...+.
T Consensus 370 L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~ 443 (577)
T KOG1258|consen 370 LLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLY 443 (577)
T ss_pred HHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHH
Confidence 222222 234578888888888877652 5422 1122233345567777666 3333332221 1222222222
Q ss_pred HH-----HhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHH
Q 041822 430 TG-----LCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLED 478 (500)
Q Consensus 430 ~~-----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 478 (500)
-- +.-.++.+.|..++.++.+. +.++...|..++..+...+-..+..-
T Consensus 444 ~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~~e~d~ 496 (577)
T KOG1258|consen 444 VKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSGREYDL 496 (577)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcchhhhh
Confidence 22 23357788888888888753 44555666777766665554444333
No 370
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.99 E-value=25 Score=25.39 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=31.2
Q ss_pred hhcCChHHHHHHHHHhhcCCC--CCCC-----HHhHHHHHHHHHcCCChHHHHHHHHHhHhh
Q 041822 78 AAHSNGLKALEFFKFTLQHPH--FTPT-----PDAFEKTLHILARMRYFDQAWELMSHVQRT 132 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~--~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 132 (500)
.+.+++..|++.+.+...... .... ....-.+.......|++++|.+.+++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 457888888655444433111 1111 122234455566778888888888877764
No 371
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.85 E-value=31 Score=29.03 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=17.6
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 208 FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
..|+..+|..++.++...|+.++|.++..++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555555555443
No 372
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.83 E-value=1.2e+02 Score=29.32 Aligned_cols=92 Identities=7% Similarity=-0.011 Sum_probs=56.5
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFG 264 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 264 (500)
...+...|+++.+.+.+.....-+.....+...+++...+.|+++.|...-+-|....++ +...........-..|-++
T Consensus 330 ~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 330 SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHH
Confidence 334556677777777776665544556667777777777777777777776666655444 3333333223333446667
Q ss_pred HHHHHHHHHHHcC
Q 041822 265 DAMRLFEEMERVA 277 (500)
Q Consensus 265 ~a~~~~~~m~~~~ 277 (500)
++.-.+++....+
T Consensus 409 ~~~~~wk~~~~~~ 421 (831)
T PRK15180 409 KSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHhccC
Confidence 7777777665543
No 373
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.29 E-value=42 Score=25.73 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 230 AMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
+..+-++.+....+.|+......-++++-+.+++..|.++|+-++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344444444444555555555555555555555555555555444
No 374
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=63.89 E-value=12 Score=19.33 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=9.2
Q ss_pred HHHHHHcCCChHHHHHHHHHhH
Q 041822 109 TLHILARMRYFDQAWELMSHVQ 130 (500)
Q Consensus 109 l~~~~~~~g~~~~a~~~~~~~~ 130 (500)
+...+...|+++.|...++...
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3333444444444444444433
No 375
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.57 E-value=1.4e+02 Score=28.64 Aligned_cols=209 Identities=10% Similarity=0.029 Sum_probs=92.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCC
Q 041822 222 FKESGDVTAMEMFYHEMVLRGFRPSVVT--YNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQ--TITTLIHGAGLVRN 297 (500)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~ 297 (500)
.++.|+.+.+..+ .+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+
T Consensus 9 A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3445565544433 34555554332 223444445566654 333334445434322 11223445567788
Q ss_pred HHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCChhHHHHH
Q 041822 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNV---TYHTMFFGLMKSSGLEGVCKL 374 (500)
Q Consensus 298 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~ 374 (500)
.+.+..+++.-....-..+..- .+.+...+..|+.+ +++.+.+.|..|+.. ..+ .+...+..|+.+-+.-+
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~t-pLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFS-PLHLAVMMGDIKGIELL 154 (413)
T ss_pred HHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHH
Confidence 8776666653221110001111 12233344556654 334444555554432 122 33344456766544433
Q ss_pred HHHHHhCCCCCCH---HHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhH---HHHHHHHHhcCCCHHHHHHHHHHH
Q 041822 375 YDRMIEGKFVPKT---RTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHA---LDLLVTGLCSRGRWEEAFECSKQM 448 (500)
Q Consensus 375 ~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m 448 (500)
+ +.|..++. .-.+ .+...+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+ +.+-+
T Consensus 155 l----~~g~~~~~~d~~g~T-pL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~L 221 (413)
T PHA02875 155 I----DHKACLDIEDCCGCT-PLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLF 221 (413)
T ss_pred H----hcCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHH
Confidence 3 33433321 1112 233334456644 4455566666655322 123444334556654 34444
Q ss_pred HHcCCCCCH
Q 041822 449 LVRRRQVSE 457 (500)
Q Consensus 449 ~~~~~~~~~ 457 (500)
.+.|..++.
T Consensus 222 l~~gad~n~ 230 (413)
T PHA02875 222 IKRGADCNI 230 (413)
T ss_pred HHCCcCcch
Confidence 455665553
No 376
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.38 E-value=2e+02 Score=30.30 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=29.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHH
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRM 165 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 165 (500)
.+-..|...|+++.|.++-..- |+..+ .++..-...|...+++..|-+++-++
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~----p~~le-~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTR----PDALE-TVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCC----HHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 4555666777777777664332 11111 23333444556666777777766665
No 377
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=63.28 E-value=1.5e+02 Score=28.90 Aligned_cols=93 Identities=9% Similarity=0.071 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHH
Q 041822 84 LKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFD 163 (500)
Q Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 163 (500)
.+-..+|+.+..+ ++.|...|...+..+-+.+.+.+...+|..|...+|+.++.-.+.+.-. |......+.|..+|.
T Consensus 88 ~rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~we-fe~n~ni~saRalfl 164 (568)
T KOG2396|consen 88 NRIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWE-FEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhH-HhhccchHHHHHHHH
Confidence 3456677777764 5779999999999999888899999999999999999887655444332 444455888998888
Q ss_pred HHHHHHhccccCCChhhHHHH
Q 041822 164 RMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~l 184 (500)
+-.+. .|.++..|-..
T Consensus 165 rgLR~-----npdsp~Lw~ey 180 (568)
T KOG2396|consen 165 RGLRF-----NPDSPKLWKEY 180 (568)
T ss_pred HHhhc-----CCCChHHHHHH
Confidence 76665 34455554433
No 378
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.08 E-value=61 Score=24.21 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 424 ALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 424 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
-|..++..|...|..++|.+++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478899999999999999999998876
No 379
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.56 E-value=34 Score=21.03 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=13.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041822 225 SGDVTAMEMFYHEMVLRGFRPSVVTYNIR 253 (500)
Q Consensus 225 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 253 (500)
.|-++++..+++.|.+.|+..+...+..+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 34444444444444444444444444433
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.30 E-value=26 Score=24.30 Aligned_cols=46 Identities=9% Similarity=-0.012 Sum_probs=26.9
Q ss_pred HcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHhhHHHH
Q 041822 364 KSSGLEGVCKLYDRMIEGKFVPK--TRTVVMLMKFFCVNFRVDLGLNL 409 (500)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~ 409 (500)
...+.++|+..|+...+.-..+. -.++..++.+++..|++++.++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777766665432222 34556667777777776665544
No 381
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.79 E-value=1.2e+02 Score=26.97 Aligned_cols=255 Identities=13% Similarity=0.125 Sum_probs=148.7
Q ss_pred hcCChHHHHHHHHHhhcCCCCCC--CHHhHHHHHHHHHcCCChHHHHHHHHHhHhh----CCCCccHHHHHHHHHHHhcc
Q 041822 79 AHSNGLKALEFFKFTLQHPHFTP--TPDAFEKTLHILARMRYFDQAWELMSHVQRT----HPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ 152 (500)
+...|++|+.-|...++..|-.. .-.++..++...-+.|++++....+.++..- -....+..+.+.++......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 35689999999999987543221 2346678899999999999998888877641 12334556677777755544
Q ss_pred ccHHHHHHHHHHHHHHHhc-cccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC------------CCHHhHHHHH
Q 041822 153 QSYEETLEAFDRMEREIFV-GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFA------------PNNKTMNILL 219 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~------------~~~~~~~~l~ 219 (500)
.+.+--...++.-.+.--. .....--.+-.-|...|...|.+.+..+++.++....+ .=...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 4444443433332221100 00111112336678888888999998888888764211 1235677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH-----HHhcCChhHHHHH-HHHHH---HcCCCCCHHH---HH
Q 041822 220 LGFKESGDVTAMEMFYHEMVLR-GFRPSVVTYNIRIDG-----YCKKGCFGDAMRL-FEEME---RVACLPSLQT---IT 286 (500)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~-----~~~~g~~~~a~~~-~~~m~---~~~~~~~~~~---~~ 286 (500)
..|....+-.....+|++.... .--|.+.... .|+- +.+.|++++|..- |+... +.|- |...+ |-
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs-pRRttCLKYL 276 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS-PRRTTCLKYL 276 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCC-cchhHHHHHH
Confidence 8888888888888888876654 2234444433 3433 3456888888643 33333 3442 32222 34
Q ss_pred HHHHHHHccCC--HHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 287 TLIHGAGLVRN--IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMD 341 (500)
Q Consensus 287 ~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 341 (500)
.+.+.+.+.|= ++. ++..-..-.|.....+.|+.+|-+ +++.+-++++.
T Consensus 277 VLANMLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 277 VLANMLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HHHHHHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 44444444331 111 111222235667788999999865 44554444443
No 382
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.71 E-value=22 Score=23.36 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 351 DNVTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
|-...-.+|.+|.+.|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334445666666666666666666554
No 383
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.25 E-value=68 Score=33.52 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=99.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHH
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQA 187 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 187 (500)
++|..+.+.|..+-|+...+.-.. -+.....+|+.+.|++.-.++. +..+|..|...
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~t-------------RF~LaLe~gnle~ale~akkld----------d~d~w~rLge~ 681 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERT-------------RFELALECGNLEVALEAAKKLD----------DKDVWERLGEE 681 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcch-------------heeeehhcCCHHHHHHHHHhcC----------cHHHHHHHHHH
Confidence 456666777777776665532211 1223457788998888766552 66789999999
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041822 188 FCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAM 267 (500)
Q Consensus 188 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 267 (500)
....|+.+-|+..|++.+. |+.|--.|.-.|+.++..++.+....++ |.... .....| .|+.++-.
T Consensus 682 Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~Km~~iae~r~---D~~~~-~qnalY--l~dv~erv 747 (1202)
T KOG0292|consen 682 ALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DATGQ-FQNALY--LGDVKERV 747 (1202)
T ss_pred HHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHHH-HHHHHH--hccHHHHH
Confidence 9999999999999988775 5555556677788888877765554431 22221 111122 47777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 268 RLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 268 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
++++..-.. | ..|.+ ....|.-++|.++.++....
T Consensus 748 kIl~n~g~~---~--laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 748 KILENGGQL---P--LAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHhcCcc---c--HHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 776643321 1 22221 23457778888888877663
No 384
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.05 E-value=82 Score=24.33 Aligned_cols=44 Identities=9% Similarity=0.048 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVK 203 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 203 (500)
++.++|..|...+. ...-+..|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~I---G~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGI---GTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTT---STTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCc---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55555555555432 233344555555555555556655555543
No 385
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=58.77 E-value=1.4e+02 Score=27.03 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHcCChhHH
Q 041822 351 DNVTYHTMFFGLMKSSGLEGV 371 (500)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a 371 (500)
...+|.-|+.+++..|+.+-.
T Consensus 320 hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHHhhhHHHHHHhcCChHHHH
Confidence 445677788888888876644
No 386
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=58.63 E-value=65 Score=32.46 Aligned_cols=91 Identities=8% Similarity=0.111 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhh---CCCCCHHhHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHH
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLS---RFAPNNKTMNILLLGFKESGDVT------AMEMFYHEMVLRGFRPSVVTYNI 252 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~g~~~~~~~~~~ 252 (500)
.+|..+|..+|++..+.++++.... +.+.-...||..|+...+.|.++ .+.+.++... +.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 3899999999999999999999874 45555677888899999999874 3444444333 4558888988
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
|+.+...--+-.-..-++.++..
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHHH
Confidence 88776553333333444555444
No 387
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.94 E-value=65 Score=22.87 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=5.6
Q ss_pred CChhHHHHHHHHHH
Q 041822 261 GCFGDAMRLFEEME 274 (500)
Q Consensus 261 g~~~~a~~~~~~m~ 274 (500)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33444444444433
No 388
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=57.61 E-value=23 Score=18.76 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhhCCCCCHHhHH
Q 041822 194 MKEARSVFVKLLSRFAPNNKTMN 216 (500)
Q Consensus 194 ~~~A~~~~~~m~~~~~~~~~~~~ 216 (500)
.+.|..+|+++....+-+...|.
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHH
Confidence 34444444444443333333333
No 389
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.42 E-value=67 Score=22.82 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 041822 333 LNAAMELMDEM 343 (500)
Q Consensus 333 ~~~a~~~~~~~ 343 (500)
.+.|.+++..+
T Consensus 52 ~~~ar~LL~~L 62 (88)
T cd08819 52 ESGARELLKRI 62 (88)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 390
>PRK09687 putative lyase; Provisional
Probab=57.38 E-value=1.5e+02 Score=26.82 Aligned_cols=232 Identities=11% Similarity=0.003 Sum_probs=117.8
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHHHH
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV----TAMEMFYHEMVLRGFRPSVVTYNI 252 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~g~~~~~~~~~~ 252 (500)
|..+....+.++...|.. .+...+..+.+ .+|...-...+.++.+.|+. +++...+..+... .++..+-..
T Consensus 36 d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ-DVFRLAIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred CHHHHHHHHHHHHhcCcc-hHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 444444455555555542 22223333332 12444444555555555542 3455555555333 345555555
Q ss_pred HHHHHHhcCCh-----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHH
Q 041822 253 RIDGYCKKGCF-----GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSL 327 (500)
Q Consensus 253 li~~~~~~g~~-----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 327 (500)
.+.+++..+.. ..+...+...... ++..+-...+.++++.++ +.+...+..+.+. +|..+-...+.++
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aL 183 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHH
Confidence 55555544321 2233333333332 344555556666666665 3455555555543 3445555556666
Q ss_pred HhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhH
Q 041822 328 IRCR-DLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLG 406 (500)
Q Consensus 328 ~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 406 (500)
.+.+ +...+...+..+... ++...-...+.++.+.|+ ..++..+-+..+.+ + .....+.++...|.. +|
T Consensus 184 g~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TL 253 (280)
T ss_pred hcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hH
Confidence 5543 234555555555543 355566667777777776 34555555555432 2 123466666777764 56
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHH
Q 041822 407 LNLWGYLIDRGFCPHGHALDLLVTGL 432 (500)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~li~~~ 432 (500)
...+..+.+.. +|..+-...+.++
T Consensus 254 ~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 254 LPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHhhC--CChhHHHHHHHHH
Confidence 66666666532 3555544444444
No 391
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=57.38 E-value=71 Score=32.21 Aligned_cols=95 Identities=11% Similarity=0.105 Sum_probs=65.9
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHH------HHHHHHHhhhCCCCCHHhHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKE------ARSVFVKLLSRFAPNNKTMN 216 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~------A~~~~~~m~~~~~~~~~~~~ 216 (500)
..++.+|...|++.++.++++.+....- + .+.-...||..|+...+.|.++- |.+.+++. .+.-|..||.
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~-~-~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a--~ln~d~~t~a 107 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNK-G-DKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA--RLNGDSLTYA 107 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCc-C-CeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh--hcCCcchHHH
Confidence 4899999999999999999999886531 1 34445678999999999998652 33333332 3566889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 217 ILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 217 ~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
.|+.+....-.-....-++.+++.+
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i~~ 132 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELIHR 132 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHHHh
Confidence 8888766543334444555555543
No 392
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=57.17 E-value=1.9e+02 Score=28.99 Aligned_cols=87 Identities=7% Similarity=-0.031 Sum_probs=42.6
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTA 230 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (500)
-.|+...|.+.+....-.. ....-+....|...+.+.|...+|..++.+.+.-.....-++..+.+++.-..+++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~----p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLA----PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred ecCCcHHHHHHHHHHhccC----hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 3455666655554433221 011112233444555555555556555555554223344455555555555666666
Q ss_pred HHHHHHHHHHC
Q 041822 231 MEMFYHEMVLR 241 (500)
Q Consensus 231 a~~~~~~~~~~ 241 (500)
|.+.|.+..+.
T Consensus 695 a~~~~~~a~~~ 705 (886)
T KOG4507|consen 695 ALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHhc
Confidence 66666555544
No 393
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.10 E-value=75 Score=23.31 Aligned_cols=45 Identities=11% Similarity=-0.022 Sum_probs=19.1
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHH
Q 041822 82 NGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSH 128 (500)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 128 (500)
..++|..+-+|+...+. -....--.-+..+...|++++|..+.+.
T Consensus 20 cHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~ 64 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNK 64 (115)
T ss_pred HHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCC
Confidence 34555555555554310 0111112223344455555555555443
No 394
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.46 E-value=2.4e+02 Score=28.98 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=14.2
Q ss_pred HHHHHHcCchhHHHHHHHHHHH
Q 041822 464 QRYLVQANANEKLEDLDRMIKN 485 (500)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~ 485 (500)
...+...|+.+++....+....
T Consensus 584 ~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 584 ADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHcCcHHHHHHHHHHHHH
Confidence 4446667777777777666554
No 395
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=56.33 E-value=1.4e+02 Score=26.06 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCC
Q 041822 385 PKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPH 421 (500)
Q Consensus 385 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 421 (500)
|.+.....++..|. .+++++|.+++.++-+.|+.|.
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 44444444444432 3455666666666555555543
No 396
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.21 E-value=24 Score=31.68 Aligned_cols=36 Identities=6% Similarity=0.153 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 041822 425 LDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASY 460 (500)
Q Consensus 425 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 460 (500)
|+..|..-.+.|++++|+++++|.++.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 456666666666666666666666666655444444
No 397
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=56.03 E-value=1.5e+02 Score=30.18 Aligned_cols=57 Identities=9% Similarity=0.110 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 041822 318 GAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYD 376 (500)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 376 (500)
..-..++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+.-+.+.|+...+..+-+
T Consensus 406 ~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 406 DDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444445555555555554444333211 11223333444444444444433333
No 398
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.93 E-value=1.6e+02 Score=30.34 Aligned_cols=128 Identities=12% Similarity=0.221 Sum_probs=78.1
Q ss_pred HHHHHHHHHhHh--hCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-hccc-cCCCh-hhHHHHHHHHHcCCCH
Q 041822 120 DQAWELMSHVQR--THPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREI-FVGI-RKFGS-EEFNVLLQAFCTQKEM 194 (500)
Q Consensus 120 ~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~-~~~~~-~~~~~ll~~~~~~~~~ 194 (500)
++-...+.+|.+ .+|+..+..+...++..|....+++...++.+.+...- .... ..+++ ..|...++---+.|+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 445566677766 36777788888888888988999999888888776431 0000 01111 1233344444456888
Q ss_pred HHHHHHHHHhhh---CCCCCHHhH-----HHH--HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 041822 195 KEARSVFVKLLS---RFAPNNKTM-----NIL--LLGFKESGDVTAMEMFYHEMVLRGFRPSVVT 249 (500)
Q Consensus 195 ~~A~~~~~~m~~---~~~~~~~~~-----~~l--~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 249 (500)
++|+...-.+++ .+.||..+. .-+ -..|...+..+.|..+|.+.-+. .|+..+
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~s 322 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYS 322 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--Cchhhc
Confidence 888888888875 366766442 221 12334455667788888877654 555443
No 399
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=55.67 E-value=2.8e+02 Score=29.42 Aligned_cols=226 Identities=12% Similarity=0.078 Sum_probs=125.9
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChh---hHHHHHH-HHHcCCCHHHHHHHHHHhhhC-----CCCCHHhHHHHH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSE---EFNVLLQ-AFCTQKEMKEARSVFVKLLSR-----FAPNNKTMNILL 219 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~ll~-~~~~~~~~~~A~~~~~~m~~~-----~~~~~~~~~~l~ 219 (500)
.....++++|..++.++......+...+... .|+.+-. .....|+++.|.++-+...+. ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456889999999998876642110111111 3444432 234578899999998887753 445667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHhcCCh--hHHHHHHHHHHHc-----C-CCCCHHHHH
Q 041822 220 LGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRI-----DGYCKKGCF--GDAMRLFEEMERV-----A-CLPSLQTIT 286 (500)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-----~~~~~~g~~--~~a~~~~~~m~~~-----~-~~~~~~~~~ 286 (500)
.+..-.|++++|..+..+..+..-+-+...+.... ..+...|+. .+.+..|...... . -.+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999998887766553333444443322 234455633 3333334333221 1 012234555
Q ss_pred HHHHHHHccCCHHHHHHH----HHhchhCCCCCCHhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHH
Q 041822 287 TLIHGAGLVRNIHQARQL----FDEMPKRNLKPDIGA--YNAMISSLIRCRDLNAAMELMDEMEEKRIGH----DNVTYH 356 (500)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~ 356 (500)
.++.++.+ .+.+..- ++.-......|-... +..|+..+...|+.++|...++++......+ +-..-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 55555555 3333322 222222222222222 2367788888999999999999887653332 222212
Q ss_pred HHHH--HHHHcCChhHHHHHHHH
Q 041822 357 TMFF--GLMKSSGLEGVCKLYDR 377 (500)
Q Consensus 357 ~li~--~~~~~g~~~~a~~~~~~ 377 (500)
..+. .....|+.+.+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 2222 23456777777666554
No 400
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.59 E-value=1.8e+02 Score=27.18 Aligned_cols=16 Identities=6% Similarity=-0.130 Sum_probs=8.3
Q ss_pred hcCCHHHHHHHHHHHH
Q 041822 224 ESGDVTAMEMFYHEMV 239 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~ 239 (500)
..++++.|..+|...+
T Consensus 195 glk~fe~Al~~~e~~v 210 (422)
T KOG2582|consen 195 GLKRFERALYLLEICV 210 (422)
T ss_pred ccccHHHHHHHHHHHH
Confidence 3445555555555444
No 401
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=55.13 E-value=76 Score=25.24 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=30.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCC
Q 041822 374 LYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRG 436 (500)
Q Consensus 374 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 436 (500)
+...+++.|++++..= ..++..+...++.-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444555666555432 2345555555555666667766666554443333222333344333
No 402
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.34 E-value=81 Score=27.41 Aligned_cols=71 Identities=8% Similarity=0.078 Sum_probs=45.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHh
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRIS 150 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (500)
.+++.+..+|++..|+++++.+... ..+......++.. ..++.+.+|....+...... ....+..++..+.
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~----~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYFVA-LANGLVTEAFSFQRSYPDEL----RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhh----hHHHHHHHHHHHH
Confidence 3555566689999999999986532 2344444444555 56688999998877765521 1334555555544
No 403
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=54.05 E-value=1.7e+02 Score=26.45 Aligned_cols=45 Identities=13% Similarity=0.089 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 041822 230 AMEMFYHEMVLRGFRPSVVTYNIRIDGYCK----KGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 277 (500)
.|...+.+....| +......+...|.. ..+..+|..+|....+.|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555555554 33333333333322 235556666666666555
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.87 E-value=81 Score=22.70 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=12.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHhh
Q 041822 184 LLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
+.......|++++|.+.+++.+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3344455566666666666655
No 405
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=53.82 E-value=91 Score=24.41 Aligned_cols=69 Identities=9% Similarity=0.111 Sum_probs=42.9
Q ss_pred CCCHHhHHHHHHHHHcCC---ChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 041822 100 TPTPDAFEKTLHILARMR---YFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMERE 168 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 168 (500)
.++..+.-.+.-++.++. +..+.+.+++.+.+..+........--+.-++.+.++++.+++..+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 355555555666666654 456677788888763333333344444555677888888888887776654
No 406
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=53.62 E-value=1.6e+02 Score=26.16 Aligned_cols=34 Identities=21% Similarity=0.125 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCC
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHF 99 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 99 (500)
+..+.+.+++.+.+.+....|+.+.+.+...+.|
T Consensus 81 ~~l~L~~iL~~lL~~~~~~~a~~i~~~y~~l~~F 114 (258)
T PF07064_consen 81 TQLFLHHILRHLLRRNLDEEALEIASKYRSLPYF 114 (258)
T ss_pred ceechHHHHHHHHhcCCcHHHHHHHHHhccCCCc
Confidence 3444555666667777888888888887765444
No 407
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=53.00 E-value=42 Score=21.21 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=19.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 041822 428 LVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRML 463 (500)
Q Consensus 428 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 463 (500)
+.-++.+.|++++|.+..+.+.+. .|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 444667777777777777777643 4555444333
No 408
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=52.40 E-value=1.9e+02 Score=26.56 Aligned_cols=150 Identities=12% Similarity=0.143 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHH
Q 041822 333 LNAAMELMDEMEEKRI----GHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLN 408 (500)
Q Consensus 333 ~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 408 (500)
.+.|.+.|+.....+. ..+......++....+.|+.+.-..+++.... ..+...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5677888888776422 34555666677777777776655555555443 3456666778888888888888888
Q ss_pred HHHHHHHCC-CCCCHhHHHHHHHHHhcCCC--HHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHH-cCchhHHHHHH
Q 041822 409 LWGYLIDRG-FCPHGHALDLLVTGLCSRGR--WEEAFECSKQ----MLVRRRQVSEASYRMLQRYLVQ-ANANEKLEDLD 480 (500)
Q Consensus 409 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~----m~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 480 (500)
+++.....+ +++. ... .++.++...+. .+.+.+.+.+ +.+. ...+......++..+.. ....+.+.++.
T Consensus 223 ~l~~~l~~~~v~~~-d~~-~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQ-DIR-YVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHCTSTS-TT-THH-HHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHcCCcccccH-HHH-HHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 888888854 4433 333 44445543333 3566666543 3322 22222244445444322 23445555555
Q ss_pred HHHHHhhc
Q 041822 481 RMIKNLQA 488 (500)
Q Consensus 481 ~~~~~~~~ 488 (500)
+-+.....
T Consensus 300 ~f~~~~~~ 307 (324)
T PF11838_consen 300 EFFEDKPK 307 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHhhCcC
Confidence 55544443
No 409
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.37 E-value=1.3e+02 Score=24.93 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccccCCC--------hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 041822 155 YEETLEAFDRMEREIFVGIRKFG--------SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 155 ~~~a~~~~~~~~~~~~~~~~~~~--------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 226 (500)
.+.|+.+++.+.+. .+.+ ...-...+-.|.+.|.+++|.+++++..+ .|+......-+....+.+
T Consensus 85 LESAl~v~~~I~~E-----~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~--d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKE-----FSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS--DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHh-----cCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc--CCCchhHHHHHHHHHHcc
Q ss_pred C
Q 041822 227 D 227 (500)
Q Consensus 227 ~ 227 (500)
+
T Consensus 158 d 158 (200)
T cd00280 158 D 158 (200)
T ss_pred c
No 410
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.29 E-value=31 Score=31.00 Aligned_cols=28 Identities=36% Similarity=0.516 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041822 251 NIRIDGYCKKGCFGDAMRLFEEMERVAC 278 (500)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~~~ 278 (500)
+..|+...+.||+++|++++++.++.|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455555555555555555555555553
No 411
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.78 E-value=1.7e+02 Score=25.67 Aligned_cols=22 Identities=27% Similarity=0.173 Sum_probs=11.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHh
Q 041822 183 VLLQAFCTQKEMKEARSVFVKL 204 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m 204 (500)
.+.........++.|+..+.+.
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHH
Confidence 3344444555555555555554
No 412
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.38 E-value=3.7e+02 Score=29.62 Aligned_cols=124 Identities=10% Similarity=0.066 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc-C--CCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHH
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERV-A--CLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMIS 325 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 325 (500)
-|..+++.+-..+..+.+.++-....+. + .+.-..+++++.+-....|.+-+|...+-.-... .-.......++.
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvi 1062 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVI 1062 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHH
Confidence 3556677777777777777766555442 1 1112345667777777777777776655433221 111234566666
Q ss_pred HHHhcCCHHH------------HHH-HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 041822 326 SLIRCRDLNA------------AME-LMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKL 374 (500)
Q Consensus 326 ~~~~~g~~~~------------a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 374 (500)
.++.+|.++. ... +++..-.....-....|+.|-.-+...+++.+|-.+
T Consensus 1063 vLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1063 VLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 7777776543 233 222222221111223345444445667777766554
No 413
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=51.22 E-value=1.6e+02 Score=25.41 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=29.4
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHH--HHHHHHHhccccHHHHHHHHHHHHHH
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSM--SIMLSRISKFQSYEETLEAFDRMERE 168 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~ 168 (500)
.+...-++.++--|.-...+.+|.+.|..-....+...+...+ ...+......|+.++|.+....+...
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe 93 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE 93 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH
Confidence 3444444444443333333444444444333322212222222 12334445566666666666555433
No 414
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.77 E-value=3.1e+02 Score=28.57 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=38.1
Q ss_pred HHHhhcCChHHHHHHHHHhhcCCCCCC---CHHhHHHHHHHHHcCCChHHHHHHHHHhHh
Q 041822 75 RLFAAHSNGLKALEFFKFTLQHPHFTP---TPDAFEKTLHILARMRYFDQAWELMSHVQR 131 (500)
Q Consensus 75 ~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 131 (500)
+.+.+++.+++|++.-+.... ..+ ........+..+...|++++|-...-.|..
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~---~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIG---NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccC---CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 345567888999988776553 344 344567778888888889888877766654
No 415
>PRK11619 lytic murein transglycosylase; Provisional
Probab=49.84 E-value=3.2e+02 Score=28.36 Aligned_cols=116 Identities=9% Similarity=0.002 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 041822 226 GDVTAMEMFYHEMVLR-GFRPS--VVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQAR 302 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~-g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 302 (500)
.+.+.|...+...... ++.+. ..++..+.......+...+|...++...... .+......-+....+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 3446666666655333 22211 1122333222222222455555555443322 23333444455555777777777
Q ss_pred HHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 303 QLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEME 344 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 344 (500)
..+..|.... .-...-.--+..++...|+.++|...|+.+.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777775532 2234445556666666777787777777653
No 416
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=49.77 E-value=1.8e+02 Score=25.42 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041822 244 RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHG 291 (500)
Q Consensus 244 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 291 (500)
.|.+.....++..|. .+++++|.+.+.++.+.|+.|.. ..+.+.+.
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv 281 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLFRV 281 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHH
Confidence 455555555655443 46677777777777777765543 23444443
No 417
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.75 E-value=1.8e+02 Score=30.73 Aligned_cols=179 Identities=11% Similarity=0.110 Sum_probs=100.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 041822 260 KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMEL 339 (500)
Q Consensus 260 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 339 (500)
..++++.+.+.+...--| ..+|..+.+.|.++-|+.+.+.=..+ ...+..+|+++.|++.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHH
Confidence 456666665554432222 23444556667777766554432111 1224567888888776
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCC
Q 041822 340 MDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFC 419 (500)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 419 (500)
-+.+- |..+|..|...-...|+.+-|+..|++.+. |..|--.|.-.|+.++-.++.+.+..+
T Consensus 666 akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r--- 727 (1202)
T KOG0292|consen 666 AKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR--- 727 (1202)
T ss_pred HHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh---
Confidence 54432 667888888888888888888888877653 222333345567777666555544332
Q ss_pred CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhc
Q 041822 420 PHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 420 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (500)
-|... ....+ .-.|+.++-.++++.. |..| ..|. .....|..+.+.++.+...+...
T Consensus 728 ~D~~~--~~qna-lYl~dv~ervkIl~n~---g~~~--layl----ta~~~G~~~~ae~l~ee~~~~~~ 784 (1202)
T KOG0292|consen 728 NDATG--QFQNA-LYLGDVKERVKILENG---GQLP--LAYL----TAAAHGLEDQAEKLGEELEKQVP 784 (1202)
T ss_pred hhhHH--HHHHH-HHhccHHHHHHHHHhc---Cccc--HHHH----HHhhcCcHHHHHHHHHhhccccC
Confidence 12111 11111 1257777777776654 3332 1221 13456777788888777776443
No 418
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.16 E-value=18 Score=28.01 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=18.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041822 434 SRGRWEEAFECSKQMLVRRRQVSEASYRMLQRY 466 (500)
Q Consensus 434 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 466 (500)
+.|.-.+|-.+|++|.+.|-.|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34555566677777777776665 34455443
No 419
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=49.00 E-value=87 Score=31.15 Aligned_cols=163 Identities=10% Similarity=0.026 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhhh--CCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 041822 194 MKEARSVFVKLLS--RFAPNNKTMNILLLGFKESG--DVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRL 269 (500)
Q Consensus 194 ~~~A~~~~~~m~~--~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 269 (500)
++.-++.++--.+ .--|+..+..+++.-....- .-+-+-.++..| +..+.|-....|...-.+.-.|+...|.+.
T Consensus 551 ~~~~~~~l~~r~d~k~~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~-~~~~~p~w~~ln~aglywr~~gn~~~a~~c 629 (886)
T KOG4507|consen 551 LSYLVKELEVRMDLKAKMPDDHARKILLSRINNYTIPEEEIGSFLFHAI-NKPNAPIWLILNEAGLYWRAVGNSTFAIAC 629 (886)
T ss_pred HHHHHHHhhhcccccccCchHHHHHHHHHHHhcccCcHHHHHHHHHHHh-cCCCCCeEEEeecccceeeecCCcHHHHHH
Confidence 4444444443222 23355555555544332211 123344444333 333333333333222222335788888777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 041822 270 FEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIG 349 (500)
Q Consensus 270 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 349 (500)
+.........-..+....|.+...+.|-.-.|..++.+..... ...+-++-.+..+|....+++.|++.|++..+....
T Consensus 630 l~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 630 LQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred HHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 7665433211122233445555556666677777777666654 345667777888888888888888888877766433
Q ss_pred CCHHHHHHHH
Q 041822 350 HDNVTYHTMF 359 (500)
Q Consensus 350 ~~~~~~~~li 359 (500)
+.+.-+.|.
T Consensus 709 -~~~~~~~l~ 717 (886)
T KOG4507|consen 709 -CPECENSLK 717 (886)
T ss_pred -ChhhHHHHH
Confidence 344444443
No 420
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.70 E-value=1.2e+02 Score=23.33 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=18.3
Q ss_pred HHHHHHHHhhh-CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 196 EARSVFVKLLS-RF-APNNKTMNILLLGFKESGDVTAMEMFYH 236 (500)
Q Consensus 196 ~A~~~~~~m~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 236 (500)
.+.++|..|.+ ++ .--+..|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455555543 21 2233344444444455555555555544
No 421
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=48.24 E-value=3.8e+02 Score=28.82 Aligned_cols=69 Identities=10% Similarity=0.017 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCC
Q 041822 229 TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER-VACLPSLQTITTLIHGAGLVRN 297 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~ 297 (500)
+.-.+.|.++.+.--.-|..++..-...+...|++..|.+++.++.+ .|-.++...|..++..+...|.
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 33444444444331122445555555555566777777777666654 3344555555555554444443
No 422
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.23 E-value=25 Score=27.29 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=14.7
Q ss_pred CCHhhHHHHHHHHHHCCCCCCHhHHHHHHH
Q 041822 401 FRVDLGLNLWGYLIDRGFCPHGHALDLLVT 430 (500)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 430 (500)
|.-..|-.+|..|++.|-+|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 444445555666666555554 4444443
No 423
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=48.05 E-value=70 Score=30.86 Aligned_cols=54 Identities=7% Similarity=-0.027 Sum_probs=28.4
Q ss_pred hhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhC
Q 041822 78 AAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTH 133 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 133 (500)
...+.++.|+.++.++++.. +....-|..-..++.+.+++..|..=+....+..
T Consensus 15 l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD 68 (476)
T ss_pred cccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC
Confidence 34456666666666666542 1122233333455566666666665555555543
No 424
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=48.03 E-value=2.3e+02 Score=26.23 Aligned_cols=152 Identities=13% Similarity=0.165 Sum_probs=86.1
Q ss_pred HHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc---CCCHHH
Q 041822 120 DQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT---QKEMKE 196 (500)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~ 196 (500)
+.-+.++++..+.+| .+...+...+..+.+..+.++..+.++++... .+-+...|...|..... .-.++.
T Consensus 48 E~klsilerAL~~np--~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~-----~~~~~~LW~~yL~~~q~~~~~f~v~~ 120 (321)
T PF08424_consen 48 ERKLSILERALKHNP--DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK-----NPGSPELWREYLDFRQSNFASFTVSD 120 (321)
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHhccCcHHH
Confidence 455667777666644 35556666777777777777777777777666 34466667666666544 223555
Q ss_pred HHHHHHHhhh-------CC----CCCHH-------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHH
Q 041822 197 ARSVFVKLLS-------RF----APNNK-------TMNILLLGFKESGDVTAMEMFYHEMVLRGF-RPSVVTYNIRIDGY 257 (500)
Q Consensus 197 A~~~~~~m~~-------~~----~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~ 257 (500)
...+|.+..+ +. .+-.. .+.-+.....+.|..+.|..+++-+.+.++ .|+...-
T Consensus 121 ~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~------- 193 (321)
T PF08424_consen 121 VRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSS------- 193 (321)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcccccc-------
Confidence 5555555432 11 11112 233334445578999999999998888754 3332211
Q ss_pred HhcCChhHHHHHHHHHHHcCC----CCCHHHHHHH
Q 041822 258 CKKGCFGDAMRLFEEMERVAC----LPSLQTITTL 288 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~l 288 (500)
....+.++.|+..-+.++ .|+..-|...
T Consensus 194 ---~~~~~~~~~fe~FWeS~vpRiGE~gA~GW~~~ 225 (321)
T PF08424_consen 194 ---SSFSERLESFEEFWESEVPRIGEPGAKGWRKW 225 (321)
T ss_pred ---ccHHHHHHHHHHHhCcCCCCCCCCCcchhhhh
Confidence 111255566666655543 3445555443
No 425
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=47.79 E-value=2.6e+02 Score=26.74 Aligned_cols=62 Identities=21% Similarity=0.102 Sum_probs=38.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 213 KTMNILLLGFKESGDVTAMEMFYHEMVLR--GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
.+.--|++...-.||.....+.++.|.+. |-.|...+---+.-+|.-.|++.+|.++|-...
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777778877777777666554 333332222335556777788888888876654
No 426
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.71 E-value=1.3e+02 Score=23.85 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=39.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 041822 339 LMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFR 402 (500)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 402 (500)
+.+.+++.|.+++.. -..++..+.+.++.-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 344555666665543 244666777776667788888888876666665555555666665554
No 427
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.55 E-value=87 Score=27.63 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=28.7
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHh-ccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHh
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIF-VGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKL 204 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m 204 (500)
+..-|.+.|++++|.+.|+.+...-. .|=..+...+...+..++.+.|+.+....+--++
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44445555555555555555422100 0002334445555666666666666555544433
No 428
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=47.02 E-value=3.7e+02 Score=28.38 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=23.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041822 255 DGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHG 291 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 291 (500)
.++.-+|+++.|+..+......+ .+.+++...+.-
T Consensus 476 ~~LlLsgqfe~AI~fL~~~~~~~--~dAVH~AI~l~~ 510 (835)
T KOG2168|consen 476 QVLLLSGQFERAIEFLHREEPNR--IDAVHVAIALAE 510 (835)
T ss_pred HHHHHHHhHHHHHHHHHhhcCCc--chhHHHHHHHHH
Confidence 33445689999999988876654 456665555443
No 429
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=46.85 E-value=1.7e+02 Score=24.51 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=10.3
Q ss_pred HHHcCCCHHHHHHHHHHhh
Q 041822 187 AFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~ 205 (500)
.....|++++|.+-++.+.
T Consensus 38 ~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHhccHHHHHHHHHHHH
Confidence 3444555666665555554
No 430
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.61 E-value=2.2e+02 Score=25.62 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=12.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhh
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
+.+...+.+++++|+..+.++..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~ 31 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILG 31 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhc
Confidence 33444555666666666666653
No 431
>PRK14700 recombination factor protein RarA; Provisional
Probab=46.55 E-value=2.3e+02 Score=25.80 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=36.9
Q ss_pred hHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHcCC
Q 041822 214 TMNILLLGFKE---SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC-----FGDAMRLFEEMERVAC 278 (500)
Q Consensus 214 ~~~~l~~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~ 278 (500)
.+..+++++.+ ..|.+.|.-++..|++.|-.|....-..++-++-.-|. ...|...++....-|.
T Consensus 125 ~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 125 EFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred hhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34444555543 46677788888888888776666665555555554443 2233444444444453
No 432
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=46.11 E-value=2.3e+02 Score=25.61 Aligned_cols=83 Identities=10% Similarity=-0.012 Sum_probs=38.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----c
Q 041822 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK----KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGL----V 295 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~ 295 (500)
..+++..+...+......+ +......+...|.. ..+..+|.++|..+.+.|.. .....|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 3455666666666665543 22233333333322 34456666666665555532 122222222222 2
Q ss_pred CCHHHHHHHHHhchhCC
Q 041822 296 RNIHQARQLFDEMPKRN 312 (500)
Q Consensus 296 ~~~~~a~~~~~~~~~~~ 312 (500)
.+..+|...|+...+.|
T Consensus 127 ~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 127 LDLVKALKYYEKAAKLG 143 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 24555555555555555
No 433
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.85 E-value=4e+02 Score=28.34 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=45.2
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGF 222 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~ 222 (500)
..+...|...|+++.|++.-+.-++.. ..++..-...|.+.+++..|-+++.++.+ .|..+.--+
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~p~~l--------e~Vl~~qAdf~f~~k~y~~AA~~yA~t~~-------~FEEVaLKF 426 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTRPDAL--------ETVLLKQADFLFQDKEYLRAAEIYAETLS-------SFEEVALKF 426 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCCHHHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHhhh-------hHHHHHHHH
Confidence 446667888999999988755432110 12334445567788888888888888743 244444444
Q ss_pred HhcCCHHH
Q 041822 223 KESGDVTA 230 (500)
Q Consensus 223 ~~~~~~~~ 230 (500)
....+.+.
T Consensus 427 l~~~~~~~ 434 (911)
T KOG2034|consen 427 LEINQERA 434 (911)
T ss_pred HhcCCHHH
Confidence 55555553
No 434
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=45.27 E-value=1.9e+02 Score=24.36 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=29.5
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHH-HHHcCCC--HHHHHHHHHHhhhCCCCC
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQ-AFCTQKE--MKEARSVFVKLLSRFAPN 211 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~--~~~A~~~~~~m~~~~~~~ 211 (500)
....|++++|.+-++++.+.--. .+.-...|..+.. +++..+. +-+|..++.....+..|+
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~--Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps 102 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEK--LKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPS 102 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCC
Confidence 34556677777766665433100 1111223444444 4555543 455666666665543343
No 435
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.91 E-value=1.3e+02 Score=22.48 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577788888888888888888887766
No 436
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.86 E-value=2.8e+02 Score=26.39 Aligned_cols=160 Identities=12% Similarity=0.046 Sum_probs=91.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---------CCCCC
Q 041822 213 KTMNILLLGFKESGDVTAMEMFYHEMVLR--GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV---------ACLPS 281 (500)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------~~~~~ 281 (500)
..+.-+...|...|+++.|.+.|.+.... ..+..+..|..+|..-.-.|+|.....+..+..+. .+++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 34677788899999999999999986544 12234556777777778889998888877776654 12333
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhchhCC------CCCCHhhHHHHHHHHHhcCCHHHHHH-----HHHHHHHCCCCC
Q 041822 282 LQTITTLIHGAGLVRNIHQARQLFDEMPKRN------LKPDIGAYNAMISSLIRCRDLNAAME-----LMDEMEEKRIGH 350 (500)
Q Consensus 282 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~-----~~~~~~~~~~~~ 350 (500)
...+..+...+. +++..|.+.|-...... +.|...+....+.+++-.++-+--.. .|+...+.
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel---- 304 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL---- 304 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc----
Confidence 344444444333 36666666554433221 22333333333334443333322222 22333332
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 041822 351 DNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380 (500)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 380 (500)
.+..+.++..-| .+++...++++++++.
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 444445444444 3578888888888764
No 437
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=44.60 E-value=2.2e+02 Score=24.98 Aligned_cols=123 Identities=13% Similarity=0.152 Sum_probs=78.9
Q ss_pred HhhcCChHHHHHHHHHhhcCCCCCCCHHh-HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccH
Q 041822 77 FAAHSNGLKALEFFKFTLQHPHFTPTPDA-FEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSY 155 (500)
Q Consensus 77 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (500)
|.....+..|+..+.+++.. .|+..+ |..-+..+.+..+++.+..--....+..|+...... .+.........+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~---nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~--flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI---NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHY--FLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHhc---CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHH--HHHHHHHhhccc
Confidence 34455778899988888875 466644 566677777788888888777777776665443333 344456677888
Q ss_pred HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHh
Q 041822 156 EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKL 204 (500)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m 204 (500)
++|+..+.+..........++....++.|..+--..-...+..++.+..
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 9999988887554433323445556666666655444555555555443
No 438
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=44.28 E-value=2.1e+02 Score=26.54 Aligned_cols=63 Identities=17% Similarity=0.077 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHCCCCCCH----hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041822 404 DLGLNLWGYLIDRGFCPHG----HALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLV 468 (500)
Q Consensus 404 ~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 468 (500)
++...++..+++. .|+. ..|-+++......|.+++++.+|++.+..|..|-...=..++..+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4555555655553 2332 4566777777777777777777777777777776555555555544
No 439
>PRK09857 putative transposase; Provisional
Probab=43.88 E-value=2.3e+02 Score=25.87 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041822 215 MNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLP 280 (500)
Q Consensus 215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 280 (500)
+..++......++.++..++++.+.+. .........++..-+.+.|.-+++.++..+|...|+..
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 344454445555555555555555544 12222233344444555555555566666666665443
No 440
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=43.77 E-value=1.1e+02 Score=22.72 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=7.8
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 041822 324 ISSLIRCRDLNAAMELMDE 342 (500)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~ 342 (500)
+..|...|+.++|..-+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444444444444443
No 441
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.93 E-value=1.5e+02 Score=26.15 Aligned_cols=56 Identities=13% Similarity=-0.075 Sum_probs=30.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHHcCCHhhHHHHHHH
Q 041822 357 TMFFGLMKSSGLEGVCKLYDRMIE----GK-FVPKTRTVVMLMKFFCVNFRVDLGLNLWGY 412 (500)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~~~~----~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 412 (500)
.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+.-+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345566677777777777766531 22 122344444555555566666655554433
No 442
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=42.75 E-value=3.1e+02 Score=26.22 Aligned_cols=32 Identities=16% Similarity=-0.018 Sum_probs=17.8
Q ss_pred HHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHH
Q 041822 252 IRIDGYCK---KGCFGDAMRLFEEMERVACLPSLQ 283 (500)
Q Consensus 252 ~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 283 (500)
.+++++.| -.+++.|+-++-+|.+.|..|--.
T Consensus 251 dliSA~hKSvRGSD~dAALyylARmi~~GeDp~yi 285 (436)
T COG2256 251 DLISALHKSVRGSDPDAALYYLARMIEAGEDPLYI 285 (436)
T ss_pred HHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHH
Confidence 35555543 355666666666666666444333
No 443
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=42.46 E-value=1.6e+02 Score=22.94 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCHhhHHHHHHHHHHCCCC
Q 041822 390 VVMLMKFFCVNFRVDLGLNLWGYLIDRGFC 419 (500)
Q Consensus 390 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 419 (500)
+..++--+...|+++.|..+.+.++++|..
T Consensus 51 l~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 51 LMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 334455566778888888888888887654
No 444
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=42.42 E-value=29 Score=33.13 Aligned_cols=188 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCCHHHHHHHHHHH----
Q 041822 296 RNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKR---------IGHDNVTYHTMFFGL---- 362 (500)
Q Consensus 296 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~li~~~---- 362 (500)
+.+++.++.++.+.+.| .......-++.|.+.++++.|.+.+++-.+.| +......+..++.+.
T Consensus 25 ~~~~e~~~~l~~l~~~g---~~dvl~ltiDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~v~~g~~~~R~l~~~~~~Pl 101 (428)
T cd00245 25 PLLEEHIELLRTLQEEG---AADVLPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPIVNHGVKTCRKLLEGVDFPV 101 (428)
T ss_pred CCHHHHHHHHHHHHhcC---CCCeeccccccchhhhhhHHHHHHHHhhhhcCccccCCCCcccccHHHHHHHHHhCCCCE
Q ss_pred -HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHH---HHHH----HCCCCCCHhHHHHHHHHHhc
Q 041822 363 -MKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLW---GYLI----DRGFCPHGHALDLLVTGLCS 434 (500)
Q Consensus 363 -~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~---~~~~----~~~~~~~~~~~~~li~~~~~ 434 (500)
.++|-.+ +..+++-+...|+.-..-.-.+.-.-|.+.-.++++..-| +++. +.|+..+..++..+...++
T Consensus 102 qvRhGt~d-~~~l~e~~~a~g~~a~egg~isy~~py~k~~~Le~si~~wqy~~rl~~~y~e~gv~in~E~fg~l~~~l~- 179 (428)
T cd00245 102 QVRHGTPD-ARLLAEIAIASGFDATEGGPISYNLPYSKNVPLEKSIENWQYCDRLVGFYEENGVPINREPFGPLTGTLV- 179 (428)
T ss_pred eeccCCcc-HHHHHHHHHHhCcccccccceeeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccCCcCcccCcC-
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCchhHHHHHHHHHHHhhc
Q 041822 435 RGRWEEAFECSKQMLVRRRQVSEASY--RMLQRYLVQANANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 435 ~g~~~~A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (500)
---..-|..+++.+...|..++..++ +.-.+.+..--....+++++..+-+.++
T Consensus 180 pptla~aiaylea~la~glgV~~lS~~f~~~~n~~qDIAk~RA~RrL~a~~l~efG 235 (428)
T cd00245 180 PPSILIAIQILEALLAAEQGVKSISVGYAQQGNLTQDIAALRALRELAKEYLPKYG 235 (428)
T ss_pred CcHHHHHHHHHHHHHHccCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHcC
No 445
>PRK10941 hypothetical protein; Provisional
Probab=40.66 E-value=2.7e+02 Score=24.98 Aligned_cols=60 Identities=15% Similarity=-0.034 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
+.+-.+|.+.++++.|+++.+.+..-.|.+..-+.--.-.|.+.|.+..|..=++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 444455566666666666666666544445555555555566666666666655555544
No 446
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=40.49 E-value=2.5e+02 Score=24.57 Aligned_cols=17 Identities=29% Similarity=0.141 Sum_probs=8.3
Q ss_pred hcCCCHHHHHHHHHHHH
Q 041822 433 CSRGRWEEAFECSKQML 449 (500)
Q Consensus 433 ~~~g~~~~A~~~~~~m~ 449 (500)
--.|+.++|.++-++..
T Consensus 180 ei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 180 EILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HTSS-HHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHH
Confidence 34566666555544443
No 447
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.38 E-value=2.6e+02 Score=24.64 Aligned_cols=61 Identities=10% Similarity=-0.029 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
+-..-.++...|++-++++--.+++...+.|+..|..-.++.+..-+.++|..=|....+.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3334444455556666666666666555556666666566655555556666555555544
No 448
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=40.33 E-value=3.7e+02 Score=26.41 Aligned_cols=20 Identities=10% Similarity=-0.021 Sum_probs=11.2
Q ss_pred hcCCCHHHHHHHHHHHHHcC
Q 041822 433 CSRGRWEEAFECSKQMLVRR 452 (500)
Q Consensus 433 ~~~g~~~~A~~~~~~m~~~~ 452 (500)
.-.|.-.++-..|++|...|
T Consensus 404 lg~~eR~~~~l~fNe~V~~G 423 (545)
T TIGR01228 404 LGYGERAKLGLAINEMVRSG 423 (545)
T ss_pred cCccHHHHHHHHHHHHHHcC
Confidence 33444455556677776654
No 449
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=40.23 E-value=1.9e+02 Score=28.48 Aligned_cols=61 Identities=8% Similarity=0.099 Sum_probs=43.2
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (500)
.+.++..|-.++.-|...++|++|.++..-.. +...|..+........+..-++..|..+.
T Consensus 569 lpisV~py~~iL~e~~sssKWeqavRLCrfv~-----eqTMWAtlAa~Av~~~~m~~~EiAYaA~~ 629 (737)
T KOG1524|consen 569 LPISVNPYPEILHEYLSSSKWEQAVRLCRFVQ-----EQTMWATLAAVAVRKHQMQISEIAYAAAL 629 (737)
T ss_pred EeeeccccHHHHHHHhccchHHHHHHHHHhcc-----chHHHHHHHHHHHhhccccHHHHHHHHhh
Confidence 56777788889999999999999998876554 45567777766666666655555444443
No 450
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.06 E-value=2.7e+02 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHH
Q 041822 246 SVVTYNIRIDGYCKKGCFGDAMRLFE 271 (500)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (500)
|......+...|.+.|++.+|...|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 56667777778888888888777664
No 451
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=39.52 E-value=1.4e+02 Score=21.22 Aligned_cols=46 Identities=7% Similarity=0.042 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhc
Q 041822 443 ECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 443 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (500)
++|+-....|+..|+..|.+++..+...=-.+.+.++.+.|.....
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~~~ 74 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSGSR 74 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcccc
Confidence 4444444455555555555555555555555555555555544433
No 452
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=38.99 E-value=2.4e+02 Score=23.78 Aligned_cols=183 Identities=14% Similarity=0.112 Sum_probs=0.0
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 240 LRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA--------CLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 240 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
+.|..++...++.++..+.+..-...-+..+-.|..+. ...+......-+..|-+.||+.+.-.+|-.....
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH
Q 041822 312 NLKP-DIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTV 390 (500)
Q Consensus 312 ~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 390 (500)
--.+ +...+..-+ |+.+.++-+++ ..+.|..+..+-++.-+.+++.+.+ =..+=
T Consensus 81 ce~~~dlq~~~~~v-----------a~~Ltkd~Kdk----~~vPFceFAetV~k~~q~~e~dK~~----------LGRiG 135 (233)
T PF14669_consen 81 CEKFADLQRFCACV-----------AEALTKDSKDK----PGVPFCEFAETVCKDPQNDEVDKTL----------LGRIG 135 (233)
T ss_pred cCCHHHHHHHHHHH-----------HHHHHhccccc----CCCCHHHHHHHHhcCCccchhhhhh----------hhHHH
Q ss_pred HHHHHHHHHcCCHhhHHHHHHHHHH--------------CCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 041822 391 VMLMKFFCVNFRVDLGLNLWGYLID--------------RGFCPHGHALDLLVTGLCSRGRWEEAFECSKQ 447 (500)
Q Consensus 391 ~~ll~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 447 (500)
.+++-.|-+..++.++.++++.|.+ .+..+.-...|.....|.++|..|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 453
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.87 E-value=3e+02 Score=25.19 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 268 RLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 268 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
++++.|...++.|.-.++..+.-.+.+.=.+.+++.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555566666666666655555555555556666666666554
No 454
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=38.81 E-value=1.6e+02 Score=21.73 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=5.8
Q ss_pred HHhcCCHHHHHHHH
Q 041822 327 LIRCRDLNAAMELM 340 (500)
Q Consensus 327 ~~~~g~~~~a~~~~ 340 (500)
+.+.|++++|..+.
T Consensus 49 LmNrG~Yq~Al~l~ 62 (115)
T TIGR02508 49 LMNRGDYQSALQLG 62 (115)
T ss_pred HHccchHHHHHHhc
Confidence 33444444444433
No 455
>PRK13342 recombination factor protein RarA; Reviewed
Probab=38.66 E-value=3.7e+02 Score=25.96 Aligned_cols=35 Identities=11% Similarity=0.005 Sum_probs=17.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 041822 261 GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLV 295 (500)
Q Consensus 261 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 295 (500)
++.+.|+.++..|.+.|..|....-..++.++-..
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 55566666666666665555444444444443333
No 456
>PRK13342 recombination factor protein RarA; Reviewed
Probab=38.61 E-value=3.7e+02 Score=25.96 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=9.8
Q ss_pred CChhHHHHHHHHHHhCCCCCC
Q 041822 366 SGLEGVCKLYDRMIEGKFVPK 386 (500)
Q Consensus 366 g~~~~a~~~~~~~~~~~~~p~ 386 (500)
++.+.|+..+..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 344444444444444444443
No 457
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.57 E-value=1.9e+02 Score=23.71 Aligned_cols=62 Identities=6% Similarity=0.004 Sum_probs=40.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHH
Q 041822 378 MIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEE 440 (500)
Q Consensus 378 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 440 (500)
+...|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|.---+..+.+.|-..+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 4566777665433 3445555556666788888888887766665554456667777776544
No 458
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.28 E-value=3.3e+02 Score=25.17 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=9.2
Q ss_pred CHHHHHHHHHHHHHCCC
Q 041822 227 DVTAMEMFYHEMVLRGF 243 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~g~ 243 (500)
+.+....++..+.+.+.
T Consensus 37 ~~~~~e~l~~~Ird~~M 53 (393)
T KOG0687|consen 37 KAAAREKLLAAIRDEDM 53 (393)
T ss_pred CHHHHHHHHHHHHhccc
Confidence 44555555555555543
No 459
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=37.34 E-value=3.3e+02 Score=24.90 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCCCHHH
Q 041822 424 ALDLLVTGLCSRGRWEE 440 (500)
Q Consensus 424 ~~~~li~~~~~~g~~~~ 440 (500)
.|.-|+.+++.+|+.+-
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 45566666666666553
No 460
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.33 E-value=4.1e+02 Score=26.10 Aligned_cols=374 Identities=10% Similarity=0.042 Sum_probs=187.7
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCH-----HhHHHHHHHHHcCC-ChHHHHHHHHHhHhhCCCCc--cHHHHHHHHHHHhc
Q 041822 80 HSNGLKALEFFKFTLQHPHFTPTP-----DAFEKTLHILARMR-YFDQAWELMSHVQRTHPSLL--TLKSMSIMLSRISK 151 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 151 (500)
..+.+.|..-++.+.....--|+. .++..+.+.+.... .+..+..++++..+.....+ +-.....++..+.-
T Consensus 60 T~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~i 139 (629)
T KOG2300|consen 60 TKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHII 139 (629)
T ss_pred hccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh
Confidence 456666666665443321112332 34555666665554 78899999998888543333 22233456667777
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHH------HHcCCC---HHHHHHHHHHhhhCCCCCHHh------H-
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQA------FCTQKE---MKEARSVFVKLLSRFAPNNKT------M- 215 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~------~~~~~~---~~~A~~~~~~m~~~~~~~~~~------~- 215 (500)
..++..|.+++.-=... ..+-...|..++.. .....+ +..+.....+|.+...+|..- |
T Consensus 140 dkD~~sA~elLavga~s-----Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFy 214 (629)
T KOG2300|consen 140 DKDFPSALELLAVGAES-----ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFY 214 (629)
T ss_pred hccchhHHHHHhccccc-----cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Confidence 78888888874321111 11122223222221 122223 445555555666666666532 1
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHC---CCC------------CCHHHHHHHHH----H---------HHhcCChhHH
Q 041822 216 -NILLLGFKESGDVTAMEMFYHEMVLR---GFR------------PSVVTYNIRID----G---------YCKKGCFGDA 266 (500)
Q Consensus 216 -~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~------------~~~~~~~~li~----~---------~~~~g~~~~a 266 (500)
+.=+..|.-.|+...+...++++.+. +-. |....+..+.+ + -...|-+++|
T Consensus 215 l~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~ 294 (629)
T KOG2300|consen 215 LVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKA 294 (629)
T ss_pred HHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHH
Confidence 22234455677777777766666543 211 22222211111 0 0123444555
Q ss_pred HHHHHHH-------HHcC-CCCCHHHH-----HHHHHHHHccCCHHHHHHHHHhchhCC-CCCCH-------hhHHHHHH
Q 041822 267 MRLFEEM-------ERVA-CLPSLQTI-----TTLIHGAGLVRNIHQARQLFDEMPKRN-LKPDI-------GAYNAMIS 325 (500)
Q Consensus 267 ~~~~~~m-------~~~~-~~~~~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~li~ 325 (500)
.++-++. .+.. +.|-...+ ..++-+=.-.|++.+|++-...|.+-- -.|.. .....++.
T Consensus 295 ~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlG 374 (629)
T KOG2300|consen 295 QKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLG 374 (629)
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHh
Confidence 4444443 3322 21111111 111112234689999998888887632 12221 11233333
Q ss_pred HH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHH-H--HHHHHH-
Q 041822 326 SL-IRCRDLNAAMELMDEMEEKRIGHDNVTYH--TMFFGLMKSSGLEGVCKLYDRMIEGKFVP-KTRTV-V--MLMKFF- 397 (500)
Q Consensus 326 ~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~-~--~ll~~~- 397 (500)
.| +..|.++.|+.-|....+.-..-|...+. .+...|.+.|+.+.-.++++.+-..+..+ ..... + .++.++
T Consensus 375 lys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glf 454 (629)
T KOG2300|consen 375 LYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLF 454 (629)
T ss_pred hHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 33 45688999999988776653333433332 24456788888776666666543221111 11111 0 112222
Q ss_pred -HHcCCHhhHHHHHHHHHHCCCCCC-----HhHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCCCCHH
Q 041822 398 -CVNFRVDLGLNLWGYLIDRGFCPH-----GHALDLLVTGLCSRGRWEEAFECSKQMLV-RRRQVSEA 458 (500)
Q Consensus 398 -~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~ 458 (500)
...+++.+|...+.+-.+..-.-| .-....+...+...|+..++.+...-..+ ..-.||..
T Consensus 455 af~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 455 AFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 467999999999988776421111 11223344556678888888877665443 22335543
No 461
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=36.94 E-value=1.2e+02 Score=19.87 Aligned_cols=33 Identities=6% Similarity=0.130 Sum_probs=14.4
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041822 364 KSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKF 396 (500)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 396 (500)
..|++-+|-++++.+-...-.+....+..+|+.
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~ 43 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQL 43 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHH
Confidence 455555666666555432212233444444443
No 462
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.63 E-value=3.4e+02 Score=24.58 Aligned_cols=25 Identities=4% Similarity=-0.100 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHH
Q 041822 353 VTYHTMFFGLMKSSGLEGVCKLYDR 377 (500)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~ 377 (500)
..+..+...|++.++.+.+.+...+
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444455555665555555554443
No 463
>PRK09857 putative transposase; Provisional
Probab=35.56 E-value=3.5e+02 Score=24.69 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=31.5
Q ss_pred HHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 041822 393 LMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS 456 (500)
Q Consensus 393 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 456 (500)
++......++.++-.++++.+.+. .+.......++..-+.+.|.-+++.++..+|...|+..+
T Consensus 212 ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 212 LFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 333333444444445555544443 122222333444555555555666777777777766544
No 464
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.57 E-value=3.1e+02 Score=23.80 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=36.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHHcCChhHHHHHHHHHHh
Q 041822 314 KPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGH---DNVTY--HTMFFGLMKSSGLEGVCKLYDRMIE 380 (500)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~ 380 (500)
.+...-+|.||--|.-...+.+|-+.|.. +.|+.+ |..++ ..-|......|+.++|++....+-.
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P 92 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP 92 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh
Confidence 34455566666666555555555555532 223332 33332 3445666777888888877776643
No 465
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=33.99 E-value=2.2e+02 Score=21.92 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=9.1
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 041822 251 NIRIDGYCKKGCFGDAMRLFE 271 (500)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~ 271 (500)
..+++...+.|-+++...+++
T Consensus 63 r~~~r~A~~~glI~d~e~Wl~ 83 (124)
T PF08780_consen 63 RDVFREAFKAGLIDDGEIWLD 83 (124)
T ss_dssp HHHHHHHHHTTSSSHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHH
Confidence 444444444444444433333
No 466
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=33.94 E-value=1.7e+02 Score=20.74 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=23.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 233 MFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 233 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
++|+-....|+..|...|..+++...-+=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555666666666666665555555555555555554
No 467
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.79 E-value=2.7e+02 Score=22.86 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=37.7
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHh
Q 041822 343 MEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVD 404 (500)
Q Consensus 343 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 404 (500)
+...|++.+..- ..++..+...++.-.|.++++.+.+.+..++..|...-+..+...|-+.
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 345566644433 3455555555666677888888877776666666666666676666543
No 468
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=33.44 E-value=2.2e+02 Score=21.87 Aligned_cols=48 Identities=8% Similarity=0.100 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041822 229 TAMEMFYHEMVLR-GFRP-SVVTYNIRIDGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 229 ~~a~~~~~~~~~~-g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
+.++++++...+. |+.- +..+-..+++...+.|-.++...+++....+
T Consensus 39 ELaWK~lK~~L~~~G~~~~~~~spr~~ir~A~~~glI~d~~~W~~ml~~R 88 (123)
T TIGR01987 39 ELAWKLMKRYLAQEGINDIGAYSPKDVLKEAFRAGLIGDESLWIAMLDDR 88 (123)
T ss_pred HHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHcCCcCCHHHHHHHHHHh
Confidence 4455555544333 4421 1334455555555555555544344333333
No 469
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.30 E-value=3.9e+02 Score=24.67 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 041822 139 LKSMSIMLSRISKFQSYEETLEAFDRMER 167 (500)
Q Consensus 139 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 167 (500)
..++......|++.|+-+.|++.+++.-+
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455555666666666666666665443
No 470
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.95 E-value=94 Score=20.68 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=22.1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 210 PNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
|....++.++..+++-.-++.+...+++..+.|. .+..+|..-++.+
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 3444455555555555555555555555555542 2444444444333
No 471
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.92 E-value=2.4e+02 Score=25.69 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=23.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 338 ELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
++++.+...++.|.-..|.-+--.+.+.=.+.+++.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455555555555555555555555555555555666665554
No 472
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.59 E-value=3.9e+02 Score=24.34 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=16.3
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHH
Q 041822 314 KPDIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~ 337 (500)
..|+..|..++.+|.-.|+...+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHH
Confidence 346677777777777777665554
No 473
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.40 E-value=6.1e+02 Score=26.58 Aligned_cols=113 Identities=12% Similarity=0.202 Sum_probs=64.6
Q ss_pred HHHHHHHHHhhhC-CC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHhc
Q 041822 195 KEARSVFVKLLSR-FA---PNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVV----------TYNIRIDGYCKK 260 (500)
Q Consensus 195 ~~A~~~~~~m~~~-~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----------~~~~li~~~~~~ 260 (500)
++-...+.+|..+ .. ....+...++-.|....+++...++.+.+.+. ||.. .|...++--.+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 3445567777753 22 34456667777777888888888888888765 2221 122233333345
Q ss_pred CChhHHHHHHHHHHHc-C-CCCCHHH-----HHHHH--HHHHccCCHHHHHHHHHhchh
Q 041822 261 GCFGDAMRLFEEMERV-A-CLPSLQT-----ITTLI--HGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 261 g~~~~a~~~~~~m~~~-~-~~~~~~~-----~~~ll--~~~~~~~~~~~a~~~~~~~~~ 310 (500)
|+-++|+...-.|.+. | +.||... |.-+. ..|-..+..+.|.+.|++.-+
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 7788888777666653 2 4555432 22111 123344456667777776655
No 474
>PRK14700 recombination factor protein RarA; Provisional
Probab=31.53 E-value=4.1e+02 Score=24.28 Aligned_cols=45 Identities=13% Similarity=0.046 Sum_probs=29.9
Q ss_pred HHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 041822 253 RIDGYCK---KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN 297 (500)
Q Consensus 253 li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 297 (500)
+++++.| -.+++.|+-++.+|.+.|..|....-..++-++-..|.
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 5666654 46778888888888888866666665566655555553
No 475
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=31.52 E-value=2.6e+02 Score=24.03 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhcCCCCC---CCHHhHH-HHHHHHHcCCChHHHHHHHHHhHhh
Q 041822 84 LKALEFFKFTLQHPHFT---PTPDAFE-KTLHILARMRYFDQAWELMSHVQRT 132 (500)
Q Consensus 84 ~~A~~~~~~~~~~~~~~---~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~ 132 (500)
..|++.|..+.....++ -+..+.. .+.....+.|+.++|.+.|..+...
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34556665555432221 1222322 2334444567777777777766654
No 476
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.33 E-value=3.8e+02 Score=23.89 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHH
Q 041822 351 DNVTYHTMFFGLMKSSGLEGVCKL 374 (500)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~ 374 (500)
|+.....+...|.+.|++.+|...
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~H 112 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERH 112 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHH
Confidence 344445555555555555555443
No 477
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=30.04 E-value=48 Score=21.89 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=20.5
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHH
Q 041822 80 HSNGLKALEFFKFTLQHPHFTPTPD 104 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~ 104 (500)
.-+++.|+..|..+...+.+||+..
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 5689999999999988777777653
No 478
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.25 E-value=51 Score=30.24 Aligned_cols=91 Identities=12% Similarity=-0.008 Sum_probs=55.0
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHH
Q 041822 189 CTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVV-TYNIRIDGYCKKGCFGDAM 267 (500)
Q Consensus 189 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~a~ 267 (500)
...|.++.|++.|...+...++....|..-.+++.+.++...|.+=++...+. .||.. -|-.--.+....|+|++|-
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 34666777777777777655666666666667777777777776665555544 23321 2222222333457777777
Q ss_pred HHHHHHHHcCCCCC
Q 041822 268 RLFEEMERVACLPS 281 (500)
Q Consensus 268 ~~~~~m~~~~~~~~ 281 (500)
..|+...+.++.+.
T Consensus 203 ~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 203 HDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHhccccHH
Confidence 77777777664443
No 479
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=29.23 E-value=7.7e+02 Score=26.76 Aligned_cols=28 Identities=7% Similarity=-0.071 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 352 NVTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
..++..-...+...|++..+.+++.++.
T Consensus 1231 sK~~~~a~~ha~~~~~yGr~lK~l~kli 1258 (1304)
T KOG1114|consen 1231 SKVWQIAKKHAKALGQYGRALKALLKLI 1258 (1304)
T ss_pred chheehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444445555555444444
No 480
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=28.83 E-value=5e+02 Score=24.50 Aligned_cols=56 Identities=16% Similarity=0.107 Sum_probs=31.8
Q ss_pred HHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041822 299 HQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTY 355 (500)
Q Consensus 299 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 355 (500)
-+|.-+++...... +-|...--.++..|...|-.+.|...|..+.-+.+.-|...|
T Consensus 200 ~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h 255 (365)
T PF09797_consen 200 LQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGH 255 (365)
T ss_pred HHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHH
Confidence 34555555555543 334555556667777777777777777666544444344433
No 481
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.49 E-value=1.8e+02 Score=21.70 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=25.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041822 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRV 403 (500)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 403 (500)
++..+...+..-.|.++++.+.+.+..++..|....+..+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3344444445555666666666655555555555555555555543
No 482
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=28.34 E-value=2.6e+02 Score=20.97 Aligned_cols=40 Identities=13% Similarity=-0.055 Sum_probs=16.4
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHH
Q 041822 81 SNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQA 122 (500)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 122 (500)
...++|-.+.+|+...++ -...+--..+..+.+.|++++|
T Consensus 20 HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A 59 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA 59 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH
Confidence 344555555555555421 1111122223334455555555
No 483
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=27.77 E-value=1.6e+02 Score=22.05 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=30.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q 041822 323 MISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLE 369 (500)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (500)
++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44445555555667777888877776667666666667777766543
No 484
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=27.75 E-value=1.7e+02 Score=22.21 Aligned_cols=46 Identities=13% Similarity=-0.008 Sum_probs=26.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 041822 357 TMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFR 402 (500)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 402 (500)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4555555555566677777777766666665555555555555554
No 485
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=27.71 E-value=1.1e+02 Score=21.04 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHH
Q 041822 437 RWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRM 482 (500)
Q Consensus 437 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 482 (500)
..+.+.+++...... ..+..|...|+.++...|..+.+..+.++
T Consensus 39 ~~~~~~~~L~~W~~~--~~~~at~~~L~~aL~~~~~~d~~~~i~~~ 82 (83)
T PF00531_consen 39 LREQTYEMLQRWRQR--EGPNATVDQLIQALRDIGRNDLAEKIEQM 82 (83)
T ss_dssp HHHHHHHHHHHHHHH--HGSTSSHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHCCcHHHHHHHHhh
Confidence 345566666666655 23445666777888888877777776654
No 486
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=27.68 E-value=2.4e+02 Score=27.42 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=22.1
Q ss_pred HHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEE 345 (500)
Q Consensus 298 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 345 (500)
+++-+++++.+.+.| .+| ....-|++|.+.+++++|...+++-.+
T Consensus 70 ~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 70 LDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred HHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhh
Confidence 445555555555543 112 233345555556666665555554443
No 487
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.42 E-value=3.9e+02 Score=22.71 Aligned_cols=31 Identities=3% Similarity=0.048 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 041822 352 NVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK 382 (500)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 382 (500)
....+.++..+...|+++.|-+.|.-++...
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 3455667777888888888888888777643
No 488
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.27 E-value=3.9e+02 Score=22.70 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=43.3
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHH-hHHHHHHHHHcCCChHHHHHHHHHhHhh
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPD-AFEKTLHILARMRYFDQAWELMSHVQRT 132 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 132 (500)
.++..+...|+++.|-+.|--+++.+++ |.. .|..-+.++.+.+.-....+.++.+...
T Consensus 46 ~lLh~~llr~d~~rA~Raf~lLiR~~~V--DiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~ 105 (199)
T PF04090_consen 46 DLLHLCLLRGDWDRAYRAFGLLIRCPEV--DIRSLWGIGAEILMRRGEQNSELEFLEWLISF 105 (199)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcCCCC--ChHhcchHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 4566778899999999999999987543 333 4777778888777766665777776553
No 489
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=27.17 E-value=2e+02 Score=24.66 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHcC
Q 041822 333 LNAAMELMDEMEEK--------RIGHDNVTYHTMFFGLMKSS 366 (500)
Q Consensus 333 ~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g 366 (500)
.+.|..++.+|--. |.. ...-|..+..+|++.|
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~-~leE~~avA~aca~~g 177 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLK-HLEEYAAVAKACAKHG 177 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcc-cHHHHHHHHHHHHHcC
Confidence 45555555555332 221 3344555666666655
No 490
>PHA03100 ankyrin repeat protein; Provisional
Probab=27.13 E-value=6.1e+02 Score=24.90 Aligned_cols=242 Identities=8% Similarity=0.006 Sum_probs=104.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHh--HHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHH
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLLSRFAPNNKT--MNILLLG-----FKESGDVTAMEMFYHEMVLRGFRPSVV---TYNI 252 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~--~~~l~~~-----~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~ 252 (500)
+.+...++.|+.+-+..+++. |..++... ....+.. ++..|+.+-+ +.+.+.|..++.. -.+.
T Consensus 37 t~L~~A~~~~~~~ivk~Ll~~---g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv----~~Ll~~ga~i~~~d~~g~tp 109 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILLDN---GADINSSTKNNSTPLHYLSNIKYNLTDVKEIV----KLLLEYGANVNAPDNNGITP 109 (480)
T ss_pred hhhhhhhccCCHHHHHHHHHc---CCCCCCccccCcCHHHHHHHHHHHhhchHHHH----HHHHHCCCCCCCCCCCCCch
Confidence 445555667776655555543 43343321 2233344 4455554443 3445566544322 2233
Q ss_pred HHHHHH-hcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccC--CHHHHHHHHHhchhCCCCCCHhh--HHHHHH
Q 041822 253 RIDGYC-KKGCFGDAMRLFEEMERVACLPSLQT--ITTLIHGAGLVR--NIHQARQLFDEMPKRNLKPDIGA--YNAMIS 325 (500)
Q Consensus 253 li~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~--~~~li~ 325 (500)
+..+.. ..|+.+ +++.+.+.|..++... -.+.+..++..| +.+-+. .+.+.|..++... -.+.+.
T Consensus 110 L~~A~~~~~~~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~----~Ll~~g~din~~d~~g~tpL~ 181 (480)
T PHA03100 110 LLYAISKKSNSYS----IVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILK----LLIDKGVDINAKNRYGYTPLH 181 (480)
T ss_pred hhHHHhcccChHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHH----HHHHCCCCcccccCCCCCHHH
Confidence 333322 455544 3444445564443221 123444455555 444433 3444454433221 123444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH---HHHHHH
Q 041822 326 SLIRCRDLNAAMELMDEMEEKRIGHDNVT--------YHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTR---TVVMLM 394 (500)
Q Consensus 326 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~ll 394 (500)
..+..|+.+-+. .+.+.|..++... +...+...+..|+ ...++.+.+.+.|..++.. -.+.+
T Consensus 182 ~A~~~~~~~iv~----~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL- 254 (480)
T PHA03100 182 IAVEKGNIDVIK----FLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPL- 254 (480)
T ss_pred HHHHhCCHHHHH----HHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHH-
Confidence 555666554443 3445555554321 0223333344444 1123444445555554421 12223
Q ss_pred HHHHHcCCHhhHHHHHHHHHHCCCCCCHhH---HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 041822 395 KFFCVNFRVDLGLNLWGYLIDRGFCPHGHA---LDLLVTGLCSRGRWEEAFECSKQMLVRRRQV 455 (500)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 455 (500)
...+..|+. ++++.+.+.|..++... .+. +....+.|+. ++++.+.+.|..+
T Consensus 255 ~~A~~~~~~----~iv~~Ll~~gad~n~~d~~g~tp-l~~A~~~~~~----~iv~~Ll~~g~~i 309 (480)
T PHA03100 255 HYAVYNNNP----EFVKYLLDLGANPNLVNKYGDTP-LHIAILNNNK----EIFKLLLNNGPSI 309 (480)
T ss_pred HHHHHcCCH----HHHHHHHHcCCCCCccCCCCCcH-HHHHHHhCCH----HHHHHHHhcCCCH
Confidence 333455554 34555566665554321 122 2223344544 3445555556533
No 491
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.97 E-value=43 Score=30.69 Aligned_cols=97 Identities=7% Similarity=-0.097 Sum_probs=70.0
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV 228 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~ 228 (500)
....|.+++|++.|-..... .++....|.--.+++.+.+++..|++-++...+-.+.+..-|-.=-.+..-.|+|
T Consensus 124 Aln~G~~~~ai~~~t~ai~l-----np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIEL-----NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HhcCcchhhhhccccccccc-----CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 34678899999988877765 4667777777788888999999998888887763233333444444455567899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH
Q 041822 229 TAMEMFYHEMVLRGFRPSVVTY 250 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~~~~~ 250 (500)
+++...+....+.++.+....|
T Consensus 199 e~aa~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHHHHHhccccHHHHHH
Confidence 9999999888888776555444
No 492
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=26.77 E-value=1.8e+02 Score=22.04 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChH
Q 041822 69 VENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFD 120 (500)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 120 (500)
....++..+...+.+-.|.++++.+.+. +...+..|.-..++.+.+.|-+.
T Consensus 9 ~R~~Il~~l~~~~~~~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 9 QRLAILELLKESPEHLTAEEIYDKLRKK-GPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHHT-TTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhhhc-cCCcCHHHHHHHHHHHHHCCeEE
Confidence 3455666666777788899999999876 56778888888888888887543
No 493
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=26.29 E-value=1.9e+02 Score=19.70 Aligned_cols=30 Identities=20% Similarity=0.113 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 435 RGRWEEAFECSKQMLVRRRQVSEASYRMLQ 464 (500)
Q Consensus 435 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 464 (500)
.|+.+++.+++++..+.|..|.......+.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~ 43 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILM 43 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 445555555555555555444444433333
No 494
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=26.19 E-value=5.9e+02 Score=24.46 Aligned_cols=105 Identities=10% Similarity=0.093 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHH
Q 041822 139 LKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNIL 218 (500)
Q Consensus 139 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l 218 (500)
..+...++. ...|+...|+..++.+.... +++. .-..+...+++++-...+..+...+..+
T Consensus 192 ~~a~~~l~~--~s~GD~R~aLN~LE~~~~~~-----~~~~------------~~~~~~l~~~l~~~~~~~Dk~gD~hYdl 252 (436)
T COG2256 192 EEALDYLVR--LSNGDARRALNLLELAALSA-----EPDE------------VLILELLEEILQRRSARFDKDGDAHYDL 252 (436)
T ss_pred HHHHHHHHH--hcCchHHHHHHHHHHHHHhc-----CCCc------------ccCHHHHHHHHhhhhhccCCCcchHHHH
Confidence 344444442 34588888888777765542 2221 0013344444444333445566777778
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041822 219 LLGFKE---SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC 262 (500)
Q Consensus 219 ~~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 262 (500)
++++.+ ..+.+.|.-++.+|++.|-.|--..-..++-++-.-|.
T Consensus 253 iSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGl 299 (436)
T COG2256 253 ISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGL 299 (436)
T ss_pred HHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC
Confidence 888765 47789999999999999976655555555555444433
No 495
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=26.11 E-value=5.8e+02 Score=24.34 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=25.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCChhHHHHHHHHHHH
Q 041822 224 ESGDVTAMEMFYHEMVLRGFRPSVV--TYNIRIDGYC--KKGCFGDAMRLFEEMER 275 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~--~~g~~~~a~~~~~~m~~ 275 (500)
..+++..|.++++.+.+. ++++.. .+..+..+|. ...++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455555666666655554 333332 2333333333 24555566666665544
No 496
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=26.02 E-value=3.3e+02 Score=21.49 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHHcC---CHhhHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 384 VPKTRTVVMLMKFFCVNF---RVDLGLNLWGYLIDRGFCPH-GHALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 384 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
.++..+-..+..++.++. ++.++..+++.+.+...+-. ....-.|.-++.+.|+++++.++++.+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444444555555443 34555666666665221111 11222344456666777777777666654
No 497
>PHA03100 ankyrin repeat protein; Provisional
Probab=25.89 E-value=6.4e+02 Score=24.74 Aligned_cols=237 Identities=11% Similarity=0.066 Sum_probs=114.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHH-----HHhcCChhHHHHHHHHHHHcCCCCC---HHHHH
Q 041822 217 ILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY--NIRIDG-----YCKKGCFGDAMRLFEEMERVACLPS---LQTIT 286 (500)
Q Consensus 217 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~-----~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~ 286 (500)
+.+...++.|+.+-+.. +.+.|..|+.... ...+.. .+..|+.+ +.+.+.+.|..++ ....+
T Consensus 37 t~L~~A~~~~~~~ivk~----Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~t 108 (480)
T PHA03100 37 LPLYLAKEARNIDVVKI----LLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGIT 108 (480)
T ss_pred hhhhhhhccCCHHHHHH----HHHcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCc
Confidence 44555667777665544 4566776664332 234444 44445443 3444455664433 22344
Q ss_pred HHHHHHH-ccCCHHHHHHHHHhchhCCCCCCHh--hHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHH--HHHH
Q 041822 287 TLIHGAG-LVRNIHQARQLFDEMPKRNLKPDIG--AYNAMISSLIRCR--DLNAAMELMDEMEEKRIGHDNVTY--HTMF 359 (500)
Q Consensus 287 ~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~--~~li 359 (500)
.+..+.. ..|+.+-+..++ +.|..++.. .-...+...+..| +.+ +++.+.+.|..++.... ..-+
T Consensus 109 pL~~A~~~~~~~~~iv~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~tpL 180 (480)
T PHA03100 109 PLLYAISKKSNSYSIVEYLL----DNGANVNIKNSDGENLLHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGYTPL 180 (480)
T ss_pred hhhHHHhcccChHHHHHHHH----HcCCCCCccCCCCCcHHHHHHHcCCChHH----HHHHHHHCCCCcccccCCCCCHH
Confidence 4444432 666666555444 444433222 1233455555666 444 44445556665543221 1234
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHH--------HHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHh---HHHHH
Q 041822 360 FGLMKSSGLEGVCKLYDRMIEGKFVPKTRT--------VVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGH---ALDLL 428 (500)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l 428 (500)
...+..|+.+- .+.+.+.|..++... +...+...+..|+ ...++.+.+.+.|..++.. -.+.+
T Consensus 181 ~~A~~~~~~~i----v~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL 254 (480)
T PHA03100 181 HIAVEKGNIDV----IKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPL 254 (480)
T ss_pred HHHHHhCCHHH----HHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 44556665543 344445565555221 1333444455555 1235556667777665432 23333
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCchhHHHHHH
Q 041822 429 VTGLCSRGRWEEAFECSKQMLVRRRQVSEASY--RMLQRYLVQANANEKLEDLD 480 (500)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~ 480 (500)
. ..+..|+. ++++.+.+.|..++.... .+.+......+..+-+..+.
T Consensus 255 ~-~A~~~~~~----~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll 303 (480)
T PHA03100 255 H-YAVYNNNP----EFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLL 303 (480)
T ss_pred H-HHHHcCCH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHH
Confidence 3 33455664 344555666766654321 12233444556655555444
No 498
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=25.52 E-value=6.3e+02 Score=24.51 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=12.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
-|..+.|.+++..|-.+-+++++.+
T Consensus 306 AM~~~~K~KNf~tAa~FArRLLel~ 330 (422)
T PF06957_consen 306 AMSQAFKLKNFITAASFARRLLELN 330 (422)
T ss_dssp HHHHCCCTTBHHHHHHHHHHHHCT-
T ss_pred HHHHHHHhccHHHHHHHHHHHHHcC
Confidence 3444445555555555555555543
No 499
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.01 E-value=6.5e+02 Score=26.34 Aligned_cols=142 Identities=11% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHH
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQA 187 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 187 (500)
.+.-+|.-.|+-++|..+.+++...........-...+..+|+..|+-.-..+++.-.... ...|+.-+..+.-+
T Consensus 506 ~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-----~nDDVrRaAVialG 580 (929)
T KOG2062|consen 506 AVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-----VNDDVRRAAVIALG 580 (929)
T ss_pred HHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-----cchHHHHHHHHHhe
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041822 188 FCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV-TAMEMFYHEMVLRGFRPSVVTYNIRIDG 256 (500)
Q Consensus 188 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~ 256 (500)
+.-..+++....+..-+.+...|.+..=.++.-+.+-.|.- .+|..+++-|... +.|-+--.++|..
T Consensus 581 FVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D--~~~fVRQgAlIa~ 648 (929)
T KOG2062|consen 581 FVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSD--PVDFVRQGALIAL 648 (929)
T ss_pred eeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcC--hHHHHHHHHHHHH
No 500
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=24.84 E-value=1.2e+02 Score=18.48 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHh
Q 041822 89 FFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQR 131 (500)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 131 (500)
+.+++.+...||-....+..+..-+-..+....+.++|+++.+
T Consensus 1 lA~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw~ 43 (46)
T PF06855_consen 1 LANDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAWS 43 (46)
T ss_dssp HHHHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHHH
T ss_pred ChhhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHHH
Done!