Query 041822
Match_columns 500
No_of_seqs 625 out of 2959
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 18:56:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.7E-36 1.6E-40 302.7 40.7 412 63-486 80-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.6E-35 5.4E-40 298.8 42.3 393 66-467 116-594 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.5E-32 5E-37 266.2 24.8 213 231-469 9-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.9E-32 6.6E-37 265.3 25.4 207 195-401 7-224 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 4.9E-28 1.7E-32 230.5 46.9 381 74-471 6-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-26 3.8E-31 221.0 44.2 364 109-486 5-368 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 3.4E-23 1.2E-27 201.1 40.8 362 103-478 26-446 (450)
8 2gw1_A Mitochondrial precursor 99.9 3.3E-23 1.1E-27 204.6 37.8 368 68-451 7-478 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.5E-22 5.2E-27 196.5 38.5 314 65-394 24-370 (450)
10 2gw1_A Mitochondrial precursor 99.9 2.5E-22 8.5E-27 198.4 39.5 371 103-487 6-479 (514)
11 3fp2_A TPR repeat-containing p 99.9 2.5E-21 8.7E-26 192.3 39.7 398 67-485 25-490 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 3.2E-19 1.1E-23 167.2 38.9 313 68-416 4-335 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 3.7E-19 1.3E-23 166.7 38.8 329 103-469 3-352 (359)
14 3fp2_A TPR repeat-containing p 99.9 3.1E-19 1.1E-23 177.2 36.6 374 65-452 57-492 (537)
15 3hym_B Cell division cycle pro 99.9 9.8E-19 3.4E-23 161.9 32.9 286 100-397 19-314 (330)
16 2xm6_A Protein corresponding t 99.9 1.9E-16 6.6E-21 155.0 49.1 353 67-454 39-435 (490)
17 2xm6_A Protein corresponding t 99.9 3.7E-16 1.3E-20 153.0 50.3 365 85-487 25-433 (490)
18 3hym_B Cell division cycle pro 99.8 3.1E-18 1.1E-22 158.6 31.4 265 142-415 25-298 (330)
19 1fch_A Peroxisomal targeting s 99.8 1.2E-18 4.1E-23 164.1 27.1 304 80-412 38-355 (368)
20 1fch_A Peroxisomal targeting s 99.8 7.6E-19 2.6E-23 165.5 24.3 267 179-449 65-357 (368)
21 2ooe_A Cleavage stimulation fa 99.8 4.6E-16 1.6E-20 153.9 44.7 409 66-487 12-493 (530)
22 4eqf_A PEX5-related protein; a 99.8 7.3E-18 2.5E-22 158.6 25.6 265 177-446 64-351 (365)
23 4eqf_A PEX5-related protein; a 99.8 8.1E-18 2.8E-22 158.3 25.2 270 72-376 70-351 (365)
24 3cv0_A Peroxisome targeting si 99.8 3.2E-17 1.1E-21 151.4 26.7 264 178-447 21-311 (327)
25 3cv0_A Peroxisome targeting si 99.8 3.9E-17 1.3E-21 150.9 26.9 261 106-376 24-310 (327)
26 3spa_A Mtrpol, DNA-directed RN 99.8 3.2E-19 1.1E-23 177.8 12.4 161 177-342 126-306 (1134)
27 4g1t_A Interferon-induced prot 99.8 9.6E-16 3.3E-20 149.5 34.7 274 65-346 49-363 (472)
28 3spa_A Mtrpol, DNA-directed RN 99.8 8.3E-19 2.9E-23 174.8 11.2 151 316-471 126-286 (1134)
29 2ooe_A Cleavage stimulation fa 99.8 9.7E-15 3.3E-19 144.4 38.2 382 90-487 2-455 (530)
30 3mkr_A Coatomer subunit epsilo 99.8 7.2E-16 2.5E-20 139.4 26.6 248 114-380 10-263 (291)
31 1b89_A Protein (clathrin heavy 99.7 1.1E-17 3.8E-22 154.7 14.5 239 79-364 15-253 (449)
32 1b89_A Protein (clathrin heavy 99.7 1.2E-15 4E-20 141.3 27.6 361 66-481 31-412 (449)
33 3mkr_A Coatomer subunit epsilo 99.7 1.6E-15 5.6E-20 137.1 27.4 250 187-451 8-264 (291)
34 1xi4_A Clathrin heavy chain; a 99.7 6.9E-14 2.4E-18 144.3 41.7 360 65-488 984-1344(1630)
35 4g1t_A Interferon-induced prot 99.7 6.8E-14 2.3E-18 136.3 38.4 374 100-489 48-462 (472)
36 1xi4_A Clathrin heavy chain; a 99.7 4.4E-13 1.5E-17 138.5 42.7 390 23-478 978-1376(1630)
37 2pl2_A Hypothetical conserved 99.7 4.5E-15 1.6E-19 128.2 21.4 196 102-307 4-210 (217)
38 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.2E-15 1.5E-19 133.5 19.3 164 178-345 77-243 (275)
39 3uq3_A Heat shock protein STI1 99.7 2.6E-14 8.8E-19 127.0 24.0 225 178-450 5-235 (258)
40 3uq3_A Heat shock protein STI1 99.7 4.9E-14 1.7E-18 125.1 25.3 223 140-380 6-235 (258)
41 2pl2_A Hypothetical conserved 99.7 1.6E-14 5.4E-19 124.8 21.2 199 175-378 2-211 (217)
42 3e4b_A ALGK; tetratricopeptide 99.7 3.4E-14 1.2E-18 137.0 25.8 382 72-486 8-421 (452)
43 3u4t_A TPR repeat-containing p 99.6 2.3E-13 7.8E-18 122.0 27.6 236 178-416 3-250 (272)
44 1ouv_A Conserved hypothetical 99.6 1.6E-12 5.4E-17 116.7 32.1 223 177-451 5-251 (273)
45 1ouv_A Conserved hypothetical 99.6 1.3E-12 4.5E-17 117.2 31.6 225 137-382 4-252 (273)
46 3u4t_A TPR repeat-containing p 99.6 2.1E-13 7E-18 122.3 25.8 232 72-311 8-250 (272)
47 2ho1_A Type 4 fimbrial biogene 99.6 1.3E-13 4.3E-18 122.1 24.0 203 67-277 37-239 (252)
48 2q7f_A YRRB protein; TPR, prot 99.6 6.1E-14 2.1E-18 123.4 21.5 203 65-277 21-223 (243)
49 2ho1_A Type 4 fimbrial biogene 99.6 2.9E-13 1E-17 119.8 25.7 196 182-380 41-237 (252)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.9E-14 1.3E-18 127.2 20.0 249 78-340 16-269 (275)
51 2h6f_A Protein farnesyltransfe 99.6 2E-13 6.8E-18 127.6 25.0 216 68-295 98-322 (382)
52 2h6f_A Protein farnesyltransfe 99.6 3.2E-13 1.1E-17 126.2 26.4 233 103-346 97-348 (382)
53 2vq2_A PILW, putative fimbrial 99.6 7E-13 2.4E-17 114.9 26.9 199 179-379 9-209 (225)
54 2vq2_A PILW, putative fimbrial 99.6 4E-13 1.4E-17 116.5 24.6 198 105-310 10-210 (225)
55 2q7f_A YRRB protein; TPR, prot 99.6 1.3E-13 4.5E-18 121.2 20.2 202 101-311 21-222 (243)
56 3sf4_A G-protein-signaling mod 99.6 5E-13 1.7E-17 127.2 23.1 276 103-378 9-333 (406)
57 4a1s_A PINS, partner of inscut 99.6 3.3E-13 1.1E-17 128.9 21.2 272 108-379 53-370 (411)
58 3sf4_A G-protein-signaling mod 99.6 1.9E-13 6.6E-18 130.1 19.2 304 64-369 6-364 (406)
59 4a1s_A PINS, partner of inscut 99.5 3.6E-13 1.2E-17 128.6 20.5 134 318-451 224-372 (411)
60 3ro2_A PINS homolog, G-protein 99.5 3.8E-13 1.3E-17 124.3 19.5 201 108-308 10-249 (338)
61 4e6h_A MRNA 3'-END-processing 99.5 9.8E-11 3.3E-15 116.8 37.7 416 65-488 64-572 (679)
62 3e4b_A ALGK; tetratricopeptide 99.5 2E-12 6.7E-17 124.7 24.0 346 108-486 8-387 (452)
63 3ro2_A PINS homolog, G-protein 99.5 8.2E-13 2.8E-17 122.0 19.9 275 69-345 7-331 (338)
64 3vtx_A MAMA; tetratricopeptide 99.5 8.6E-12 2.9E-16 104.4 22.2 164 104-275 6-169 (184)
65 3vtx_A MAMA; tetratricopeptide 99.5 6E-12 2.1E-16 105.4 21.1 167 66-241 4-170 (184)
66 3ulq_A Response regulator aspa 99.5 6.2E-12 2.1E-16 118.8 23.7 160 184-343 109-290 (383)
67 2ond_A Cleavage stimulation fa 99.5 6.1E-11 2.1E-15 108.2 28.6 217 195-415 33-269 (308)
68 2ond_A Cleavage stimulation fa 99.5 8.2E-11 2.8E-15 107.4 29.5 217 156-381 33-270 (308)
69 3ulq_A Response regulator aspa 99.5 1.9E-11 6.4E-16 115.5 25.2 233 253-488 109-370 (383)
70 4abn_A Tetratricopeptide repea 99.5 1.8E-12 6.3E-17 125.7 18.5 214 154-376 83-316 (474)
71 4abn_A Tetratricopeptide repea 99.5 6.3E-12 2.1E-16 121.9 21.5 214 119-343 84-318 (474)
72 3nf1_A KLC 1, kinesin light ch 99.4 1.1E-12 3.9E-17 119.8 14.7 176 65-240 25-223 (311)
73 4e6h_A MRNA 3'-END-processing 99.4 1.7E-09 5.9E-14 107.9 37.5 395 82-486 47-533 (679)
74 3nf1_A KLC 1, kinesin light ch 99.4 2.1E-12 7.1E-17 118.0 15.0 167 179-345 28-223 (311)
75 1hz4_A MALT regulatory protein 99.4 4.4E-10 1.5E-14 105.6 29.2 268 112-379 23-320 (373)
76 3q15_A PSP28, response regulat 99.4 1.7E-10 6E-15 108.6 26.2 246 64-310 7-289 (378)
77 3q15_A PSP28, response regulat 99.4 1.6E-10 5.4E-15 108.9 25.7 316 100-450 7-364 (378)
78 1hz4_A MALT regulatory protein 99.4 2.5E-10 8.4E-15 107.4 25.7 267 184-450 20-321 (373)
79 3as5_A MAMA; tetratricopeptide 99.4 1E-10 3.6E-15 97.6 20.8 165 67-240 8-172 (186)
80 3as5_A MAMA; tetratricopeptide 99.3 1.5E-10 5.2E-15 96.6 19.3 163 105-275 10-172 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.3 9E-11 3.1E-15 118.5 20.2 167 65-240 7-173 (723)
82 4gyw_A UDP-N-acetylglucosamine 99.3 1.1E-10 3.7E-15 117.9 20.8 168 100-275 6-173 (723)
83 3edt_B KLC 2, kinesin light ch 99.2 2E-10 7E-15 103.0 16.0 231 80-311 14-281 (283)
84 4i17_A Hypothetical protein; T 99.2 2.2E-09 7.4E-14 93.2 20.9 193 68-277 8-210 (228)
85 4i17_A Hypothetical protein; T 99.2 1.4E-09 4.9E-14 94.3 19.8 155 101-263 5-169 (228)
86 3edt_B KLC 2, kinesin light ch 99.2 1.6E-10 5.4E-15 103.7 13.7 232 190-450 13-280 (283)
87 3qky_A Outer membrane assembly 99.2 2.1E-09 7.3E-14 95.3 19.0 186 67-276 15-224 (261)
88 3qky_A Outer membrane assembly 99.1 3.5E-09 1.2E-13 93.9 18.3 215 100-336 12-251 (261)
89 1qqe_A Vesicular transport pro 99.1 5.3E-09 1.8E-13 94.5 19.4 127 149-275 47-186 (292)
90 3urz_A Uncharacterized protein 99.1 4.7E-09 1.6E-13 89.5 17.3 166 108-284 9-192 (208)
91 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.3E-08 4.5E-13 87.9 20.1 200 72-312 9-214 (225)
92 1qqe_A Vesicular transport pro 99.1 7.3E-09 2.5E-13 93.5 19.1 212 82-311 32-269 (292)
93 2fo7_A Synthetic consensus TPR 99.1 7.2E-09 2.5E-13 81.1 16.6 126 144-275 6-131 (136)
94 2pzi_A Probable serine/threoni 99.1 3.3E-09 1.1E-13 107.6 18.2 185 114-309 402-603 (681)
95 2fo7_A Synthetic consensus TPR 99.1 1.2E-08 4E-13 79.8 17.3 129 106-241 4-132 (136)
96 3mv2_B Coatomer subunit epsilo 99.1 2.9E-08 9.8E-13 88.1 21.1 179 197-381 85-282 (310)
97 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.3E-08 1.1E-12 85.4 20.5 169 67-277 41-214 (225)
98 3mv2_B Coatomer subunit epsilo 99.0 2E-07 7E-12 82.7 25.1 244 185-451 20-282 (310)
99 3dra_A Protein farnesyltransfe 99.0 4.1E-07 1.4E-11 81.5 27.2 232 75-345 41-286 (306)
100 2pzi_A Probable serine/threoni 99.0 5.6E-09 1.9E-13 105.9 16.9 201 129-343 386-602 (681)
101 4ga2_A E3 SUMO-protein ligase 99.0 2.1E-09 7.2E-14 86.3 11.1 146 73-227 3-149 (150)
102 3dra_A Protein farnesyltransfe 99.0 1.9E-07 6.4E-12 83.7 24.7 216 65-289 65-300 (306)
103 3urz_A Uncharacterized protein 99.0 2.8E-08 9.5E-13 84.7 18.0 162 142-311 7-186 (208)
104 3rjv_A Putative SEL1 repeat pr 99.0 1.1E-07 3.9E-12 81.1 20.7 30 247-276 18-47 (212)
105 3qou_A Protein YBBN; thioredox 99.0 2.1E-08 7E-13 90.2 16.5 168 100-275 114-283 (287)
106 2r5s_A Uncharacterized protein 99.0 8.2E-09 2.8E-13 85.4 12.6 55 76-132 15-69 (176)
107 2uy1_A Cleavage stimulation fa 99.0 3.9E-06 1.3E-10 81.2 33.1 360 66-450 14-412 (493)
108 3rjv_A Putative SEL1 repeat pr 98.9 1E-07 3.5E-12 81.4 19.7 179 264-454 3-200 (212)
109 4ga2_A E3 SUMO-protein ligase 98.9 9.9E-09 3.4E-13 82.3 12.3 144 146-296 4-148 (150)
110 2r5s_A Uncharacterized protein 98.9 2.1E-08 7.1E-13 82.9 14.0 161 180-343 8-170 (176)
111 3qou_A Protein YBBN; thioredox 98.9 2.2E-08 7.6E-13 90.0 15.1 166 138-310 116-283 (287)
112 2ifu_A Gamma-SNAP; membrane fu 98.9 7.3E-08 2.5E-12 87.6 18.4 199 151-379 3-222 (307)
113 2vsy_A XCC0866; transferase, g 98.9 4.3E-08 1.5E-12 97.6 17.5 152 81-241 3-157 (568)
114 2ifu_A Gamma-SNAP; membrane fu 98.9 5E-08 1.7E-12 88.7 15.3 230 80-339 4-254 (307)
115 2uy1_A Cleavage stimulation fa 98.9 1.1E-05 3.6E-10 78.2 32.4 362 83-485 11-412 (493)
116 2vsy_A XCC0866; transferase, g 98.9 5.4E-08 1.9E-12 96.8 16.8 154 116-277 2-158 (568)
117 3q7a_A Farnesyltransferase alp 98.8 1.3E-05 4.3E-10 72.7 27.1 145 72-225 59-214 (349)
118 3u3w_A Transcriptional activat 98.7 8E-06 2.7E-10 73.5 24.2 162 289-450 82-265 (293)
119 3q7a_A Farnesyltransferase alp 98.7 5.3E-06 1.8E-10 75.1 22.5 221 117-346 68-331 (349)
120 4gco_A Protein STI-1; structur 98.7 8.8E-07 3E-11 68.3 14.7 93 107-206 17-109 (126)
121 3gyz_A Chaperone protein IPGC; 98.7 2.7E-07 9.1E-12 73.6 12.0 94 105-205 38-131 (151)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3E-06 1E-10 72.1 19.6 123 289-416 13-150 (213)
123 1a17_A Serine/threonine protei 98.7 1.1E-06 3.8E-11 71.3 16.2 90 147-241 21-110 (166)
124 1a17_A Serine/threonine protei 98.7 1.1E-06 3.8E-11 71.3 16.0 130 178-309 13-144 (166)
125 2qfc_A PLCR protein; TPR, HTH, 98.7 2.1E-06 7E-11 77.4 19.2 168 105-273 77-263 (293)
126 3u3w_A Transcriptional activat 98.7 9.5E-07 3.2E-11 79.6 16.9 165 107-274 79-264 (293)
127 2c2l_A CHIP, carboxy terminus 98.7 2.3E-07 8E-12 83.0 12.7 95 104-205 5-99 (281)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.3E-06 7.8E-11 72.9 18.3 88 73-167 12-99 (213)
129 4gco_A Protein STI-1; structur 98.6 7.4E-07 2.5E-11 68.8 13.4 99 178-277 13-111 (126)
130 2lni_A Stress-induced-phosphop 98.6 9.2E-07 3.1E-11 68.7 14.3 118 64-190 13-130 (133)
131 1na0_A Designed protein CTPR3; 98.6 1.7E-06 5.6E-11 66.2 15.3 95 105-206 11-105 (125)
132 2lni_A Stress-induced-phosphop 98.6 2.1E-06 7E-11 66.6 15.9 121 100-227 13-133 (133)
133 2e2e_A Formate-dependent nitri 98.6 2.7E-07 9.4E-12 76.1 11.2 122 150-277 21-145 (177)
134 2qfc_A PLCR protein; TPR, HTH, 98.6 1.4E-05 4.6E-10 72.0 23.3 164 180-343 77-263 (293)
135 4f3v_A ESX-1 secretion system 98.6 2E-07 6.8E-12 81.6 10.6 191 79-277 18-238 (282)
136 3gyz_A Chaperone protein IPGC; 98.6 4E-07 1.4E-11 72.6 11.6 123 105-241 11-133 (151)
137 2e2e_A Formate-dependent nitri 98.6 3.4E-07 1.2E-11 75.6 11.4 119 79-206 22-143 (177)
138 2c2l_A CHIP, carboxy terminus 98.6 4.6E-07 1.6E-11 81.1 12.8 193 67-275 4-198 (281)
139 1na0_A Designed protein CTPR3; 98.6 2.1E-06 7.2E-11 65.6 15.1 97 179-276 10-106 (125)
140 2vyi_A SGTA protein; chaperone 98.6 1.5E-06 5E-11 67.2 14.3 27 179-205 81-107 (131)
141 3gw4_A Uncharacterized protein 98.6 4.4E-07 1.5E-11 76.6 12.0 95 179-273 27-133 (203)
142 2vyi_A SGTA protein; chaperone 98.6 2.4E-06 8.3E-11 65.9 14.8 115 180-296 14-128 (131)
143 4f3v_A ESX-1 secretion system 98.6 7.9E-07 2.7E-11 77.8 12.9 126 253-381 108-237 (282)
144 2vgx_A Chaperone SYCD; alterna 98.6 7.1E-07 2.4E-11 71.1 11.5 98 102-206 20-117 (148)
145 3gw4_A Uncharacterized protein 98.5 1E-06 3.6E-11 74.3 13.1 85 190-274 4-93 (203)
146 2vgx_A Chaperone SYCD; alterna 98.5 8E-07 2.7E-11 70.8 11.4 99 138-241 20-118 (148)
147 1p5q_A FKBP52, FK506-binding p 98.5 2.6E-06 9.1E-11 78.2 15.8 165 81-274 127-292 (336)
148 2xcb_A PCRH, regulatory protei 98.5 1.1E-06 3.6E-11 69.6 10.8 95 105-206 20-114 (142)
149 1elw_A TPR1-domain of HOP; HOP 98.5 1E-05 3.4E-10 61.0 15.4 107 104-217 5-111 (118)
150 3upv_A Heat shock protein STI1 98.5 3.8E-06 1.3E-10 64.7 13.1 56 75-132 12-67 (126)
151 2fbn_A 70 kDa peptidylprolyl i 98.4 4.3E-07 1.5E-11 76.6 8.1 88 179-267 89-176 (198)
152 4b4t_Q 26S proteasome regulato 98.4 1.7E-05 5.7E-10 75.8 20.1 202 74-275 11-244 (434)
153 3dss_A Geranylgeranyl transfer 98.4 0.00031 1.1E-08 63.3 26.5 99 119-224 90-191 (331)
154 1p5q_A FKBP52, FK506-binding p 98.4 6.9E-06 2.4E-10 75.5 15.9 132 177-310 146-293 (336)
155 3dss_A Geranylgeranyl transfer 98.4 0.00045 1.5E-08 62.3 27.1 167 114-289 40-234 (331)
156 2kck_A TPR repeat; tetratricop 98.4 6.5E-06 2.2E-10 61.4 12.6 102 175-277 3-107 (112)
157 3upv_A Heat shock protein STI1 98.4 1.2E-05 4.2E-10 61.7 14.1 90 146-240 11-100 (126)
158 2xcb_A PCRH, regulatory protei 98.4 3E-06 1E-10 66.9 10.7 96 141-241 20-115 (142)
159 1elw_A TPR1-domain of HOP; HOP 98.4 1.7E-05 5.7E-10 59.7 14.6 97 179-276 5-101 (118)
160 2fbn_A 70 kDa peptidylprolyl i 98.3 6.2E-06 2.1E-10 69.3 12.8 131 105-240 40-185 (198)
161 1elr_A TPR2A-domain of HOP; HO 98.3 3.3E-06 1.1E-10 65.2 10.3 107 179-287 5-117 (131)
162 2kck_A TPR repeat; tetratricop 98.3 6.5E-06 2.2E-10 61.4 11.6 97 103-206 6-105 (112)
163 3q49_B STIP1 homology and U bo 98.3 9.3E-06 3.2E-10 63.4 12.8 97 102-205 8-104 (137)
164 4b4t_Q 26S proteasome regulato 98.3 3.9E-05 1.3E-09 73.2 19.5 203 108-310 9-244 (434)
165 4gcn_A Protein STI-1; structur 98.3 1.1E-05 3.7E-10 62.2 12.7 98 179-276 9-112 (127)
166 3sz7_A HSC70 cochaperone (SGT) 98.3 1.7E-05 5.8E-10 64.2 14.4 94 142-240 14-107 (164)
167 4gcn_A Protein STI-1; structur 98.3 1.4E-05 4.7E-10 61.6 13.0 62 69-132 10-71 (127)
168 2dba_A Smooth muscle cell asso 98.3 2.1E-05 7.3E-10 62.1 14.6 112 65-186 26-141 (148)
169 3sz7_A HSC70 cochaperone (SGT) 98.3 1E-05 3.5E-10 65.6 12.8 98 67-168 11-108 (164)
170 1elr_A TPR2A-domain of HOP; HO 98.3 6.8E-06 2.3E-10 63.3 11.1 108 141-255 6-120 (131)
171 3q49_B STIP1 homology and U bo 98.3 2E-05 7E-10 61.4 13.5 100 175-275 6-105 (137)
172 2dba_A Smooth muscle cell asso 98.2 8.5E-05 2.9E-09 58.5 16.6 119 100-223 25-144 (148)
173 2xev_A YBGF; tetratricopeptide 98.2 4.8E-05 1.6E-09 58.5 14.7 93 109-206 8-104 (129)
174 1hxi_A PEX5, peroxisome target 98.2 1.1E-05 3.7E-10 61.6 10.5 86 149-239 27-112 (121)
175 1hxi_A PEX5, peroxisome target 98.2 1.4E-05 4.9E-10 60.9 10.8 92 72-167 22-113 (121)
176 2xev_A YBGF; tetratricopeptide 98.1 8.3E-05 2.8E-09 57.1 13.9 90 147-241 10-105 (129)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 4E-05 1.4E-09 73.6 14.4 144 103-273 268-412 (457)
178 3ro3_A PINS homolog, G-protein 98.1 3.7E-05 1.3E-09 61.6 12.1 133 142-274 12-156 (164)
179 3ro3_A PINS homolog, G-protein 98.1 4.6E-05 1.6E-09 61.0 12.0 137 105-241 11-158 (164)
180 1wao_1 Serine/threonine protei 98.1 1.6E-05 5.5E-10 76.7 10.4 119 147-271 14-134 (477)
181 1dce_A Protein (RAB geranylger 98.0 0.00033 1.1E-08 68.9 19.1 173 80-262 42-241 (567)
182 1wao_1 Serine/threonine protei 98.0 1.7E-05 5.8E-10 76.6 9.8 120 74-202 13-134 (477)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.00013 4.4E-09 70.0 14.6 133 177-311 267-415 (457)
184 1dce_A Protein (RAB geranylger 98.0 0.00097 3.3E-08 65.6 20.9 175 117-300 43-244 (567)
185 3k9i_A BH0479 protein; putativ 98.0 1.6E-05 5.3E-10 60.2 6.5 87 80-168 3-90 (117)
186 1ihg_A Cyclophilin 40; ppiase 97.9 0.00011 3.9E-09 68.1 13.5 124 142-266 226-360 (370)
187 3rkv_A Putative peptidylprolyl 97.9 0.00015 5.2E-09 58.3 12.6 60 142-206 66-125 (162)
188 1ihg_A Cyclophilin 40; ppiase 97.9 8.7E-05 3E-09 68.9 12.3 124 105-233 225-362 (370)
189 3rkv_A Putative peptidylprolyl 97.9 0.0002 6.8E-09 57.7 12.8 65 177-241 62-126 (162)
190 2if4_A ATFKBP42; FKBP-like, al 97.9 5.2E-05 1.8E-09 69.6 10.1 147 104-276 180-328 (338)
191 3k9i_A BH0479 protein; putativ 97.9 2.2E-05 7.7E-10 59.4 6.2 60 180-239 29-88 (117)
192 2if4_A ATFKBP42; FKBP-like, al 97.8 6.6E-05 2.3E-09 68.9 9.8 149 67-241 179-328 (338)
193 1klx_A Cysteine rich protein B 97.8 0.00065 2.2E-08 52.9 14.1 111 153-277 9-127 (138)
194 1klx_A Cysteine rich protein B 97.8 0.00067 2.3E-08 52.8 13.8 110 193-312 10-127 (138)
195 2hr2_A Hypothetical protein; a 97.8 0.00037 1.3E-08 55.0 11.6 100 106-205 14-129 (159)
196 3n71_A Histone lysine methyltr 97.7 0.00044 1.5E-08 66.4 14.0 97 179-275 352-463 (490)
197 2hr2_A Hypothetical protein; a 97.7 0.00055 1.9E-08 54.0 11.9 65 142-206 14-85 (159)
198 3n71_A Histone lysine methyltr 97.7 0.00045 1.5E-08 66.3 13.6 125 363-487 320-465 (490)
199 2l6j_A TPR repeat-containing p 97.7 5E-05 1.7E-09 56.5 5.6 89 178-268 4-99 (111)
200 2kat_A Uncharacterized protein 97.6 0.00083 2.9E-08 50.2 10.6 80 85-168 3-82 (115)
201 1na3_A Designed protein CTPR2; 97.5 0.0009 3.1E-08 47.3 10.3 61 180-240 11-71 (91)
202 2l6j_A TPR repeat-containing p 97.5 0.00048 1.7E-08 50.9 8.8 88 140-232 5-98 (111)
203 1zu2_A Mitochondrial import re 97.5 0.00029 9.9E-09 55.4 7.6 95 150-251 13-128 (158)
204 1na3_A Designed protein CTPR2; 97.5 0.00096 3.3E-08 47.1 9.8 76 141-221 11-86 (91)
205 2kat_A Uncharacterized protein 97.4 0.00089 3E-08 50.1 9.5 77 197-274 4-80 (115)
206 1zu2_A Mitochondrial import re 97.4 0.00045 1.5E-08 54.3 7.8 98 116-221 15-133 (158)
207 3ma5_A Tetratricopeptide repea 97.4 0.00061 2.1E-08 49.6 8.1 66 175-240 4-69 (100)
208 3ma5_A Tetratricopeptide repea 97.4 0.00063 2.1E-08 49.5 7.6 64 67-132 7-70 (100)
209 3ly7_A Transcriptional activat 97.0 0.023 8E-07 51.4 15.6 153 100-287 191-348 (372)
210 3ly7_A Transcriptional activat 97.0 0.057 1.9E-06 48.9 18.0 74 244-321 274-347 (372)
211 2kc7_A BFR218_protein; tetratr 96.9 0.0044 1.5E-07 44.5 8.0 83 74-168 7-90 (99)
212 3mkq_A Coatomer beta'-subunit; 96.9 0.024 8.1E-07 58.7 16.4 45 328-378 663-707 (814)
213 3mkq_B Coatomer subunit alpha; 96.8 0.11 3.9E-06 41.4 15.7 129 147-308 13-141 (177)
214 3qwp_A SET and MYND domain-con 96.7 0.014 4.9E-07 55.0 11.9 92 359-450 294-399 (429)
215 3qww_A SET and MYND domain-con 96.7 0.01 3.6E-07 55.9 10.8 86 365-450 311-410 (433)
216 3mkq_A Coatomer beta'-subunit; 96.7 0.032 1.1E-06 57.7 15.6 153 78-274 610-763 (814)
217 3qww_A SET and MYND domain-con 96.6 0.012 4E-07 55.5 10.7 89 117-205 312-409 (433)
218 3qwp_A SET and MYND domain-con 96.5 0.04 1.4E-06 51.9 13.8 96 110-205 294-398 (429)
219 2kc7_A BFR218_protein; tetratr 96.4 0.023 8E-07 40.6 8.9 64 147-215 8-72 (99)
220 1wy6_A Hypothetical protein ST 96.3 0.22 7.5E-06 37.3 14.8 138 260-419 20-157 (172)
221 3bee_A Putative YFRE protein; 96.1 0.08 2.7E-06 37.4 10.4 70 67-138 6-78 (93)
222 3mkq_B Coatomer subunit alpha; 96.1 0.19 6.6E-06 40.0 13.1 128 327-484 15-142 (177)
223 3bee_A Putative YFRE protein; 95.9 0.05 1.7E-06 38.5 8.4 66 176-241 4-72 (93)
224 3u64_A Protein TP_0956; tetrat 95.8 0.85 2.9E-05 39.7 20.0 91 229-321 180-281 (301)
225 2v5f_A Prolyl 4-hydroxylase su 95.8 0.11 3.8E-06 37.6 10.1 30 105-134 48-77 (104)
226 1pc2_A Mitochondria fission pr 95.5 0.095 3.2E-06 40.7 9.0 82 368-451 14-100 (152)
227 3u64_A Protein TP_0956; tetrat 95.4 0.25 8.7E-06 42.9 12.3 107 369-485 180-297 (301)
228 2v5f_A Prolyl 4-hydroxylase su 95.3 0.13 4.4E-06 37.2 9.0 28 248-275 47-74 (104)
229 4ady_A RPN2, 26S proteasome re 95.2 3.3 0.00011 42.6 24.9 55 256-311 569-623 (963)
230 1pc2_A Mitochondria fission pr 95.1 0.29 1E-05 37.9 10.6 81 85-168 16-100 (152)
231 4h7y_A Dual specificity protei 95.0 0.33 1.1E-05 37.2 10.3 105 174-279 9-126 (161)
232 1wy6_A Hypothetical protein ST 94.6 1 3.5E-05 33.8 15.9 139 114-278 18-156 (172)
233 4b4t_P 26S proteasome regulato 93.9 3.1 0.0001 39.2 17.1 55 152-206 29-84 (445)
234 2ff4_A Probable regulatory pro 93.9 1.3 4.4E-05 41.0 14.1 72 180-251 173-249 (388)
235 4h7y_A Dual specificity protei 93.7 0.77 2.6E-05 35.2 9.9 32 101-132 11-48 (161)
236 4gns_B Protein CSD3, chitin bi 93.4 0.86 2.9E-05 45.8 12.7 132 106-238 251-397 (754)
237 2ff4_A Probable regulatory pro 93.1 1.7 5.8E-05 40.2 13.6 73 390-463 174-251 (388)
238 4fhn_B Nucleoporin NUP120; pro 93.0 5.9 0.0002 42.5 19.3 84 249-334 901-988 (1139)
239 3lvg_A Clathrin heavy chain 1; 92.9 0.00021 7.1E-09 66.1 -12.6 245 177-442 53-324 (624)
240 4gns_B Protein CSD3, chitin bi 92.7 2 6.8E-05 43.2 14.0 128 140-273 249-397 (754)
241 1nzn_A CGI-135 protein, fissio 92.5 0.8 2.7E-05 34.1 8.4 89 365-457 14-107 (126)
242 3lvg_A Clathrin heavy chain 1; 92.1 0.00084 2.9E-08 62.2 -9.8 247 64-338 51-325 (624)
243 1nzn_A CGI-135 protein, fissio 91.8 3.1 0.0001 31.0 11.1 66 176-241 33-103 (126)
244 4fhn_B Nucleoporin NUP120; pro 91.6 3 0.0001 44.8 15.0 52 73-130 818-869 (1139)
245 4b4t_P 26S proteasome regulato 90.2 12 0.00042 35.1 21.1 52 117-168 30-85 (445)
246 1v54_E Cytochrome C oxidase po 89.7 1.7 5.9E-05 30.6 7.1 62 402-464 25-86 (109)
247 3lpz_A GET4 (YOR164C homolog); 89.2 12 0.0004 33.4 21.5 164 143-344 39-214 (336)
248 4ady_A RPN2, 26S proteasome re 89.1 23 0.00078 36.6 23.1 281 77-367 421-721 (963)
249 3o48_A Mitochondria fission 1 86.6 8.4 0.00029 28.9 9.9 75 383-459 36-113 (134)
250 2wpv_A GET4, UPF0363 protein Y 86.4 17 0.00058 32.1 20.3 164 143-344 37-215 (312)
251 1v54_E Cytochrome C oxidase po 85.6 7.6 0.00026 27.4 9.6 47 300-346 28-74 (109)
252 2y69_E Cytochrome C oxidase su 85.4 3.7 0.00013 30.7 7.1 62 402-464 68-129 (152)
253 4b4t_R RPN7, 26S proteasome re 84.2 10 0.00036 35.4 11.8 61 319-379 133-195 (429)
254 2y69_E Cytochrome C oxidase su 83.5 12 0.00041 28.0 9.6 47 300-346 71-117 (152)
255 3ffl_A Anaphase-promoting comp 83.2 12 0.00041 29.3 9.6 117 143-275 24-150 (167)
256 3txn_A 26S proteasome regulato 83.2 28 0.00095 31.9 24.0 163 106-273 22-207 (394)
257 1y8m_A FIS1; mitochondria, unk 82.2 14 0.00049 28.0 11.4 73 384-458 36-111 (144)
258 3esl_A Checkpoint serine/threo 80.3 17 0.00058 29.5 9.8 57 401-457 93-150 (202)
259 4b4t_R RPN7, 26S proteasome re 79.4 11 0.00038 35.2 10.1 96 180-275 133-236 (429)
260 1zbp_A Hypothetical protein VP 79.1 5.9 0.0002 33.9 7.1 52 189-240 8-59 (273)
261 1zbp_A Hypothetical protein VP 78.9 7.9 0.00027 33.1 7.9 52 79-132 9-60 (273)
262 2wpv_A GET4, UPF0363 protein Y 78.8 34 0.0012 30.1 19.2 169 106-309 36-215 (312)
263 3lpz_A GET4 (YOR164C homolog); 78.7 36 0.0012 30.3 24.6 39 258-296 66-108 (336)
264 3ffl_A Anaphase-promoting comp 78.4 22 0.00076 27.8 11.5 24 143-166 67-90 (167)
265 3o48_A Mitochondria fission 1 74.8 24 0.00082 26.4 9.6 23 253-275 84-106 (134)
266 3esl_A Checkpoint serine/threo 73.5 35 0.0012 27.7 10.0 53 333-385 95-148 (202)
267 1wdy_A 2-5A-dependent ribonucl 71.9 12 0.00041 32.1 7.8 47 398-444 190-238 (285)
268 3txn_A 26S proteasome regulato 71.5 62 0.0021 29.6 24.9 169 71-239 23-208 (394)
269 3eiq_C Programmed cell death p 70.6 26 0.00089 31.6 9.5 72 181-254 57-130 (358)
270 4a1g_A Mitotic checkpoint seri 70.4 35 0.0012 26.3 9.1 54 404-457 82-136 (152)
271 2qx5_A Nucleoporin NIC96; mRNA 69.0 94 0.0032 30.8 17.5 24 108-131 157-180 (661)
272 1k1a_A B-cell lymphoma 3-encod 66.6 25 0.00086 29.1 8.5 23 221-243 15-37 (241)
273 3eu9_A Huntingtin-interacting 65.7 9.9 0.00034 31.6 5.7 14 433-446 218-231 (240)
274 2uwj_G Type III export protein 65.4 33 0.0011 24.1 7.0 15 82-96 21-35 (115)
275 3eiq_C Programmed cell death p 64.6 81 0.0028 28.4 13.4 66 390-456 220-287 (358)
276 2p58_C Putative type III secre 64.1 35 0.0012 24.0 7.6 16 81-96 21-36 (116)
277 4a1g_A Mitotic checkpoint seri 63.0 28 0.00096 26.8 7.0 51 370-420 83-134 (152)
278 2zu6_B Programmed cell death p 62.5 35 0.0012 30.0 8.6 59 181-240 6-66 (307)
279 2wvi_A Mitotic checkpoint seri 62.2 54 0.0019 25.6 9.5 55 404-458 77-132 (164)
280 1wdy_A 2-5A-dependent ribonucl 60.3 10 0.00035 32.6 4.9 83 394-481 152-240 (285)
281 1y8m_A FIS1; mitochondria, unk 59.7 55 0.0019 24.8 11.0 67 210-276 37-106 (144)
282 2d2s_A Exocyst complex compone 59.2 69 0.0023 26.8 9.5 87 185-274 25-118 (235)
283 2wvi_A Mitotic checkpoint seri 59.1 34 0.0011 26.8 7.0 50 371-420 79-129 (164)
284 2nsz_A Programmed cell death p 57.5 56 0.0019 24.2 8.9 65 320-385 10-76 (129)
285 2ion_A PDCD4, programmed cell 55.6 57 0.0019 25.1 7.8 65 320-385 12-78 (152)
286 2zu6_B Programmed cell death p 55.3 73 0.0025 28.0 9.4 24 215-238 6-29 (307)
287 4aez_C MAD3, mitotic spindle c 53.1 39 0.0013 27.9 6.7 54 404-457 131-185 (223)
288 1k1a_A B-cell lymphoma 3-encod 50.5 31 0.001 28.6 6.2 24 255-278 14-37 (241)
289 3bge_A Predicted ATPase; struc 50.0 98 0.0033 24.9 8.3 31 260-290 20-50 (201)
290 2d2s_A Exocyst complex compone 49.0 83 0.0028 26.3 8.4 88 253-343 24-117 (235)
291 2ion_A PDCD4, programmed cell 48.6 86 0.0029 24.1 7.8 64 181-244 12-77 (152)
292 3jxi_A Vanilloid receptor-rela 47.9 15 0.00051 31.2 3.8 19 259-277 14-32 (260)
293 4aez_C MAD3, mitotic spindle c 47.7 48 0.0016 27.4 6.4 52 334-385 131-183 (223)
294 3ctd_A Putative ATPase, AAA fa 47.6 1.1E+02 0.0039 24.9 8.8 66 213-278 33-106 (213)
295 2r9g_A AAA ATPase, central reg 47.5 1.1E+02 0.0038 24.7 9.6 31 261-292 28-58 (204)
296 4gq2_M Nucleoporin NUP120; bet 45.5 2E+02 0.0069 30.1 12.4 48 249-296 899-950 (950)
297 1ug3_A EIF4GI, eukaryotic prot 45.3 70 0.0024 28.6 7.9 62 181-243 14-77 (339)
298 3dd4_A KV channel-interacting 43.0 1.4E+02 0.0047 24.5 9.9 65 101-165 82-147 (229)
299 2r9g_A AAA ATPase, central reg 42.9 1.3E+02 0.0045 24.3 9.1 64 215-279 14-85 (204)
300 3ctd_A Putative ATPase, AAA fa 42.6 1.4E+02 0.0047 24.4 8.7 62 251-312 36-105 (213)
301 2nsz_A Programmed cell death p 42.1 1E+02 0.0035 22.8 9.3 63 182-244 11-75 (129)
302 4g8k_A 2-5A-dependent ribonucl 41.1 1.5E+02 0.0052 25.9 9.7 22 182-203 26-47 (337)
303 3bge_A Predicted ATPase; struc 41.0 1.4E+02 0.0048 24.0 8.4 46 216-261 8-56 (201)
304 1mzb_A Ferric uptake regulatio 40.4 98 0.0033 23.1 6.9 59 378-437 9-68 (136)
305 2fe3_A Peroxide operon regulat 40.3 1.1E+02 0.0036 23.2 7.2 36 435-470 34-69 (145)
306 2fu4_A Ferric uptake regulatio 40.2 78 0.0027 20.9 6.7 59 413-472 8-67 (83)
307 4b4t_S RPN3, 26S proteasome re 39.9 2.5E+02 0.0087 26.7 12.0 63 179-241 232-299 (523)
308 2uwj_G Type III export protein 39.7 97 0.0033 21.8 8.6 47 293-345 50-96 (115)
309 2jul_A Calsenilin; EF-hand, ca 39.1 1.7E+02 0.0058 24.5 10.4 135 100-238 108-255 (256)
310 2p58_C Putative type III secre 39.1 1E+02 0.0034 21.8 9.3 12 294-305 52-63 (116)
311 3b7b_A Euchromatic histone-lys 37.5 70 0.0024 26.2 6.4 17 433-449 218-234 (237)
312 3t8k_A Uncharacterized protein 37.5 1.1E+02 0.0037 24.2 7.3 21 294-314 47-67 (186)
313 2xig_A Ferric uptake regulatio 36.5 1.1E+02 0.0039 23.2 6.9 19 399-417 38-56 (150)
314 3hra_A Ankyrin repeat family p 35.9 89 0.003 24.7 6.7 39 441-479 157-197 (201)
315 2w57_A Ferric uptake regulatio 35.8 1.1E+02 0.0037 23.3 6.6 59 378-437 8-67 (150)
316 4b4t_S RPN3, 26S proteasome re 35.8 3E+02 0.01 26.3 15.8 72 64-135 228-302 (523)
317 3t8k_A Uncharacterized protein 35.8 71 0.0024 25.3 5.9 81 404-484 91-178 (186)
318 3l6a_A Eukaryotic translation 34.7 2.6E+02 0.0088 25.2 13.2 24 142-165 15-38 (364)
319 1ug3_A EIF4GI, eukaryotic prot 34.6 2.5E+02 0.0084 25.0 15.4 26 141-166 13-38 (339)
320 3jxi_A Vanilloid receptor-rela 34.3 16 0.00055 31.0 1.8 27 220-246 10-36 (260)
321 2xig_A Ferric uptake regulatio 34.2 1.5E+02 0.0052 22.5 8.3 62 341-403 16-77 (150)
322 4gq2_M Nucleoporin NUP120; bet 34.0 2E+02 0.0069 30.0 10.3 130 323-470 816-949 (950)
323 1s6c_A KV4 potassium channel-i 33.5 1.6E+02 0.0056 22.6 10.6 65 101-165 36-101 (183)
324 3l6a_A Eukaryotic translation 33.3 1.3E+02 0.0044 27.2 7.6 72 318-390 13-86 (364)
325 3hra_A Ankyrin repeat family p 33.2 85 0.0029 24.8 6.1 14 189-202 13-26 (201)
326 3kae_A CDC27, possible protein 32.3 1.8E+02 0.0063 22.9 7.1 48 224-277 45-92 (242)
327 3kea_A K1L; tropism, ANK repea 32.2 1.7E+02 0.0059 24.9 8.2 15 409-423 210-224 (285)
328 3lxu_X Tripeptidyl-peptidase 2 31.8 2.1E+02 0.0072 31.0 9.8 179 66-261 1107-1331(1354)
329 1mzb_A Ferric uptake regulatio 31.6 1.6E+02 0.0054 21.9 7.0 62 342-404 8-70 (136)
330 3kea_A K1L; tropism, ANK repea 31.4 1.4E+02 0.0048 25.5 7.5 185 185-389 35-225 (285)
331 3eyy_A Putative iron uptake re 30.6 1.6E+02 0.0054 22.2 6.8 60 342-403 9-68 (145)
332 1qsa_A Protein (soluble lytic 30.5 4E+02 0.014 26.1 34.1 362 60-447 33-438 (618)
333 3ljn_A Hypothetical protein; a 30.1 1.4E+02 0.0049 26.5 7.7 23 255-277 89-111 (364)
334 3eyy_A Putative iron uptake re 29.5 1.1E+02 0.0037 23.2 5.6 58 377-436 9-66 (145)
335 2fe3_A Peroxide operon regulat 29.5 1.8E+02 0.0062 21.9 8.1 61 342-403 12-72 (145)
336 2rfa_A Transient receptor pote 29.1 1.6E+02 0.0056 23.8 7.4 16 187-202 9-24 (232)
337 2rfa_A Transient receptor pote 29.0 2E+02 0.0067 23.3 7.8 86 395-485 126-222 (232)
338 4ets_A Ferric uptake regulatio 28.1 1.8E+02 0.006 22.5 6.7 36 380-416 26-61 (162)
339 1oai_A Nuclear RNA export fact 27.8 33 0.0011 21.3 1.9 25 80-104 33-57 (59)
340 3ltm_A Alpha-REP4; protein eng 27.7 2.3E+02 0.0079 22.5 18.4 186 195-402 18-203 (211)
341 2kz2_A Calmodulin, CAM; TR2C, 27.5 1.4E+02 0.0049 20.1 8.4 64 80-143 25-88 (94)
342 1bpo_A Protein (clathrin); cla 27.4 3.9E+02 0.013 25.1 12.8 83 80-168 342-424 (494)
343 2keb_A DNA polymerase subunit 27.3 1.6E+02 0.0054 20.5 6.3 31 406-436 28-58 (101)
344 2w57_A Ferric uptake regulatio 27.3 1.8E+02 0.0061 22.1 6.5 62 342-404 7-69 (150)
345 2b7e_A PRE-mRNA processing pro 26.9 40 0.0014 21.0 2.1 29 264-292 3-31 (59)
346 3aji_A 26S proteasome non-ATPa 26.1 1.3E+02 0.0044 24.4 6.1 175 288-481 9-193 (231)
347 1s6c_A KV4 potassium channel-i 25.6 2.3E+02 0.0078 21.8 10.7 116 82-203 54-181 (183)
348 3aji_A 26S proteasome non-ATPa 25.6 1E+02 0.0035 25.0 5.4 20 185-204 10-29 (231)
349 3eu9_A Huntingtin-interacting 24.4 1.2E+02 0.004 24.7 5.6 19 394-412 214-232 (240)
350 3r88_A Anthranilate phosphorib 23.8 2.3E+02 0.0079 25.7 7.5 67 176-242 21-89 (377)
351 2ijq_A Hypothetical protein; s 23.6 2.6E+02 0.0088 21.7 8.1 16 331-346 46-61 (161)
352 3bu8_A Telomeric repeat-bindin 23.4 3.1E+02 0.011 22.5 8.0 76 155-235 88-171 (235)
353 3qil_A Clathrin heavy chain 1; 23.4 66 0.0023 23.5 3.0 51 215-268 35-85 (125)
354 2fu4_A Ferric uptake regulatio 22.8 1.7E+02 0.0057 19.2 7.1 58 343-401 8-66 (83)
355 3i5p_A Nucleoporin NUP170; hel 22.3 4.7E+02 0.016 25.0 9.5 36 246-281 216-251 (525)
356 2o03_A Probable zinc uptake re 21.9 1.7E+02 0.006 21.4 5.4 46 358-403 16-61 (131)
357 3pvs_A Replication-associated 21.9 4.8E+02 0.017 24.2 13.9 54 329-382 267-325 (447)
358 4ets_A Ferric uptake regulatio 21.7 2.5E+02 0.0084 21.7 6.4 61 343-404 24-86 (162)
359 2ijq_A Hypothetical protein; s 21.3 2.9E+02 0.0099 21.4 8.3 53 363-415 43-103 (161)
360 3f3f_C Nucleoporin NUP85; stru 21.2 3.1E+02 0.011 26.4 8.0 51 180-231 518-568 (570)
361 1bd8_A P19INK4D CDK4/6 inhibit 21.0 74 0.0025 23.9 3.3 15 293-307 10-24 (156)
362 2cos_A Serine/threonine protei 20.7 85 0.0029 19.0 2.6 37 407-448 10-48 (54)
363 1bpo_A Protein (clathrin); cla 20.6 5.3E+02 0.018 24.2 10.9 93 178-271 361-453 (494)
364 3mwm_A ZUR, putative metal upt 20.5 2E+02 0.0067 21.5 5.5 52 67-119 13-64 (139)
365 4g8k_A 2-5A-dependent ribonucl 20.4 2.1E+02 0.0073 24.9 6.8 49 328-387 281-329 (337)
366 2etb_A Transient receptor pote 20.2 1E+02 0.0035 25.6 4.4 25 220-244 7-31 (256)
367 2pnn_A Transient receptor pote 20.0 64 0.0022 27.3 3.0 14 190-203 22-35 (273)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-36 Score=302.67 Aligned_cols=412 Identities=9% Similarity=-0.047 Sum_probs=297.0
Q ss_pred CCChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHH
Q 041822 63 PLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSM 142 (500)
Q Consensus 63 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (500)
+.++...++.+++.+.+.|++++|+.+|+.+... .|+..++..++.+|.+.|++++|..+|+.+.... .+..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ 153 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN---RSSACR 153 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGG---TCHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccc---cchhHH
Confidence 3467778899999999999999999999999864 5788999999999999999999999999986542 356688
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHH-----------hccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC--
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREI-----------FVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFA-- 209 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-- 209 (500)
..++.+|.+.|++++|.++|+++.... .....+.+..+|+.++.+|.+.|++++|.++|++|.+..+
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 233 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh
Confidence 899999999999999999998532110 0000133578899999999999999999999998875222
Q ss_pred ---------------------------------------------------------------------CCHHhHHHHHH
Q 041822 210 ---------------------------------------------------------------------PNNKTMNILLL 220 (500)
Q Consensus 210 ---------------------------------------------------------------------~~~~~~~~l~~ 220 (500)
++..+|+.++.
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 313 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 44555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 041822 221 GFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQ 300 (500)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 300 (500)
++.+.|++++|..+|+++.+.+ +.+..+++.++.+|.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 6666666666666666665543 2245556666666666666666666666665433 3456677777777777777777
Q ss_pred HHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 041822 301 ARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380 (500)
Q Consensus 301 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 380 (500)
|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.+.. +..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777776643 235667777777777777777777777777765433 667777777777777777777777777765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHC----CCCCC--HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 041822 381 GKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR----GFCPH--GHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQ 454 (500)
Q Consensus 381 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 454 (500)
.. ..+..+|..++..+.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 43 335677777777777777777777777777664 55566 5677777777777777777777777777654 2
Q ss_pred CCHHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 455 VSEASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
.+..+|..+..+|.+.|++++|..+++.+.+.
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 35677777777777777777777777766655
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-35 Score=298.82 Aligned_cols=393 Identities=10% Similarity=0.002 Sum_probs=334.4
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhC------------
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTH------------ 133 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------ 133 (500)
+...+..++..+.+.|++++|+.+|+.+... +++..+++.++.+|.+.|++++|.++|+++....
T Consensus 116 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 192 (597)
T 2xpi_A 116 NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQ 192 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CC
T ss_pred CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccc
Confidence 3456677888899999999999999988653 5788889999999999999999999988533221
Q ss_pred --CCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc---------------------------------------
Q 041822 134 --PSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG--------------------------------------- 172 (500)
Q Consensus 134 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------------------------------------- 172 (500)
....+..++..++..|.+.|++++|++.|+++.+.+...
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 012246678888889999999999999998886543100
Q ss_pred ---------------------------ccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 173 ---------------------------IRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 173 ---------------------------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
..+++..+|+.++.+|.+.|++++|.++|+++.+..+.+..+++.++.++.+.
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh
Confidence 01378889999999999999999999999999975567899999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 041822 226 GDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLF 305 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 305 (500)
|++++|..+++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|
T Consensus 353 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998653 4578999999999999999999999999998864 346889999999999999999999999
Q ss_pred HhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC----
Q 041822 306 DEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG---- 381 (500)
Q Consensus 306 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---- 381 (500)
+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 431 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 431 TTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 9999875 447899999999999999999999999999987544 7899999999999999999999999999865
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHH
Q 041822 382 KFVPK--TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEAS 459 (500)
Q Consensus 382 ~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 459 (500)
+..|+ ..+|..+..+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+... -+...
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~ 586 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP-NEIMA 586 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CChHH
Confidence 66787 7899999999999999999999999999875 44789999999999999999999999999997532 23455
Q ss_pred HHHHHHHH
Q 041822 460 YRMLQRYL 467 (500)
Q Consensus 460 ~~~l~~~~ 467 (500)
+..+..+|
T Consensus 587 ~~~l~~~~ 594 (597)
T 2xpi_A 587 SDLLKRAL 594 (597)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 55555444
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.5e-32 Score=266.16 Aligned_cols=213 Identities=15% Similarity=0.185 Sum_probs=130.3
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhch
Q 041822 231 MEMFYHEMVLRGFRPSV-VTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMP 309 (500)
Q Consensus 231 a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 309 (500)
++.+...+.+.+....+ ..++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+..+.+
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 33444444444443332 235555555555566666666666665555555555555555555544331100
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 041822 310 KRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRT 389 (500)
Q Consensus 310 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 389 (500)
.+.+.+++|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 01123566777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 041822 390 VVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQ 469 (500)
Q Consensus 390 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 469 (500)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|..
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777766654
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.9e-32 Score=265.29 Aligned_cols=207 Identities=16% Similarity=0.166 Sum_probs=175.9
Q ss_pred HHHHHHHHHhhh-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------h
Q 041822 195 KEARSVFVKLLS-RFAPN-NKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC---------F 263 (500)
Q Consensus 195 ~~A~~~~~~m~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~ 263 (500)
..+..+.+.+.+ +..+. ...++.+|.+|++.|++++|.++|++|.+.|++||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 345556666665 44433 346889999999999999999999999999999999999999999998765 5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 264 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 343 (500)
++|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 041822 344 EEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNF 401 (500)
Q Consensus 344 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 401 (500)
.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999988887643
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.9e-28 Score=230.47 Aligned_cols=381 Identities=12% Similarity=0.025 Sum_probs=329.5
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccc
Q 041822 74 GRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQ 153 (500)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 153 (500)
...+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++...+..|. +...+..+...|.+.|
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~--~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--LAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHCC
Confidence 455677899999999999988753 556777888888899999999999999999988665 5568889999999999
Q ss_pred cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 041822 154 SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEM 233 (500)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 233 (500)
++++|...|+++... .|.+..+|..+..++.+.|++++|.+.|+++.+..+.+...+..+...+...|++++|..
T Consensus 82 ~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 82 QLQEAIEHYRHALRL-----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp CHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHc-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999876 466788899999999999999999999999997656677888899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCC
Q 041822 234 FYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNL 313 (500)
Q Consensus 234 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 313 (500)
.|+++.+.. +.+..+|..+...+.+.|++++|++.|+++.+.+ +.+...|..+...+...|++++|...+++..+..
T Consensus 157 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 233 (388)
T 1w3b_A 157 CYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 999998873 3357889999999999999999999999999875 3457788899999999999999999999998864
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 041822 314 KPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVML 393 (500)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 393 (500)
+.+..++..+...|.+.|++++|.+.|+++.+.+.. +...|..+...+.+.|++++|.+.|+++.+.. +.+..++..+
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 311 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNL 311 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 336788999999999999999999999999987544 67789999999999999999999999998753 5568899999
Q ss_pred HHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC
Q 041822 394 MKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS-EASYRMLQRYLVQAN 471 (500)
Q Consensus 394 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~ 471 (500)
...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+. .|+ ...|..+...+...|
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 999999999999999999998853 345788999999999999999999999999864 444 555666666665544
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.1e-26 Score=221.03 Aligned_cols=364 Identities=12% Similarity=0.003 Sum_probs=318.4
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHH
Q 041822 109 TLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAF 188 (500)
Q Consensus 109 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 188 (500)
+...+.+.|++++|.+.++.+.+..|+. ...+..+...+...|++++|...++...+. .|.+..+|..+...+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-----~p~~~~~~~~lg~~~ 77 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDN--TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-----NPLLAEAYSNLGNVY 77 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchHHHHHHHHHH
Confidence 3556778999999999999999987764 456677788889999999999999998876 577889999999999
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 041822 189 CTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMR 268 (500)
Q Consensus 189 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 268 (500)
.+.|++++|...|+++.+..+.+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+
T Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999998656678899999999999999999999999999874 2245567778888999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 041822 269 LFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRI 348 (500)
Q Consensus 269 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 348 (500)
.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++......
T Consensus 157 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 157 CYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 999999865 3457889999999999999999999999999875 33678899999999999999999999999887654
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHH
Q 041822 349 GHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLL 428 (500)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 428 (500)
. +..++..+...|.+.|++++|.+.|+++.+.+ +.+..++..+..++.+.|++++|.+.++++.+.. +.+..++..+
T Consensus 235 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 311 (388)
T 1w3b_A 235 N-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNL 311 (388)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 3 67889999999999999999999999999863 3347789999999999999999999999999864 4578899999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 429 VTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
...+.+.|++++|...++++.+.. +.+..++..+..++.+.|++++|...++.+...
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999998642 234678899999999999999999999887754
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=3.4e-23 Score=201.07 Aligned_cols=362 Identities=10% Similarity=0.025 Sum_probs=182.7
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHH
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFN 182 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 182 (500)
...+..+...+.+.|++++|..+|+.+.+..|. +...+..+..+|...|++++|+..|+++.+. .+.+..++.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 98 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIQL-----KMDFTAARL 98 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCcHHHHH
Confidence 333444444444444444444444444443332 2333444444444444444444444444433 233344444
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCH---HhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLLSRFAPNN---KTMNIL------------LLGFKESGDVTAMEMFYHEMVLRGFRPSV 247 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 247 (500)
.+..+|.+.|++++|.+.|+++.+..+.+. ..+..+ ...+.+.|++++|...|+.+.+.. +.+.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 444444444444444444444443222222 333333 222555555555555555555442 2244
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHH----
Q 041822 248 VTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM---- 323 (500)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 323 (500)
..+..+..+|.+.|++++|+++|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 555555555555555555555555555432 2344555555555555555555555555555432 1122223222
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 041822 324 --------ISSLIRCRDLNAAMELMDEMEEKRIGHD----NVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVV 391 (500)
Q Consensus 324 --------i~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 391 (500)
...|.+.|++++|...|+++.+.... + ...|..+...+.+.|++++|.+.++++.+.. +.+..++.
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 56666666777777666666654221 1 2355566666666677777777766665432 22456666
Q ss_pred HHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHH------------HHhcCC-----CHHHHHHHHHHHHHcCCC
Q 041822 392 MLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVT------------GLCSRG-----RWEEAFECSKQMLVRRRQ 454 (500)
Q Consensus 392 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~------------~~~~~g-----~~~~A~~~~~~m~~~~~~ 454 (500)
.+..+|...|++++|...++++.+.. +-+...+..+.. .|...| +.+++.+.++++... ..
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-~~ 411 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-WH 411 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH-SC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH-hC
Confidence 66666666677777777776666632 113344444432 233333 566777777763221 12
Q ss_pred CC-----------HHHHHHHHHHHHHcCchhHHHH
Q 041822 455 VS-----------EASYRMLQRYLVQANANEKLED 478 (500)
Q Consensus 455 ~~-----------~~~~~~l~~~~~~~~~~~~~~~ 478 (500)
|| ...|..+..+|...++.+....
T Consensus 412 pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 22 1256666777777776665443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.3e-23 Score=204.63 Aligned_cols=368 Identities=12% Similarity=0.008 Sum_probs=225.0
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHH
Q 041822 68 LVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLS 147 (500)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (500)
..+..+...+...|++++|++.|+.+.+.. |+...+..+..++...|++++|.+.++++.+..|. +...+..+..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 81 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD--YSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH--HHHHHHHHHH
Confidence 445567788889999999999999999863 78999999999999999999999999999998765 4567888999
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccCCChhh-----------------------------------------------
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRKFGSEE----------------------------------------------- 180 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 180 (500)
+|...|++++|...|+++.... +.+...
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-----DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE 156 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-----SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc
Confidence 9999999999999999987653 222222
Q ss_pred --------------------------------HHHHHHHHHc---CCCHHHHHHHHHHhhh-----C--C-------CCC
Q 041822 181 --------------------------------FNVLLQAFCT---QKEMKEARSVFVKLLS-----R--F-------APN 211 (500)
Q Consensus 181 --------------------------------~~~ll~~~~~---~~~~~~A~~~~~~m~~-----~--~-------~~~ 211 (500)
+......+.. .|++++|..+|+++.+ . . +.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 2222222222 5556666666655544 1 1 222
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041822 212 NKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHG 291 (500)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 291 (500)
..++..+...+...|++++|...++.+.+.. |+...+..+..+|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHH
Confidence 3455555555556666666666666555542 225555555555556666666666666555443 2234455555555
Q ss_pred HHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q 041822 292 AGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGV 371 (500)
Q Consensus 292 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 371 (500)
+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHH
Confidence 556666666666666555543 223445555555555666666666666555544222 344555555555566666666
Q ss_pred HHHHHHHHhCCC-CCC----HHHHHHHHHHHHH---cCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 041822 372 CKLYDRMIEGKF-VPK----TRTVVMLMKFFCV---NFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFE 443 (500)
Q Consensus 372 ~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 443 (500)
...++++.+... .++ ...+..+..++.. .|++++|...++.+.+.. +.+..++..+..+|.+.|++++|..
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 666555543210 011 2245555555555 566666666666555532 2234455555555666666666666
Q ss_pred HHHHHHHc
Q 041822 444 CSKQMLVR 451 (500)
Q Consensus 444 ~~~~m~~~ 451 (500)
.|++..+.
T Consensus 471 ~~~~a~~~ 478 (514)
T 2gw1_A 471 LFEESADL 478 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.5e-22 Score=196.47 Aligned_cols=314 Identities=10% Similarity=0.021 Sum_probs=267.3
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.+...+..++..+...|++++|++.|+.+.+.. +.+..++..+..++...|++++|...|+.+.+..|. ....+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 99 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--FTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHHH
Confidence 456677788899999999999999999999853 567889999999999999999999999999998766 4567888
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCCh---hhHHHHH------------HHHHcCCCHHHHHHHHHHhhhCCC
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS---EEFNVLL------------QAFCTQKEMKEARSVFVKLLSRFA 209 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~ll------------~~~~~~~~~~~A~~~~~~m~~~~~ 209 (500)
+...|.+.|++++|...|+++... .+.+. .++..++ ..+.+.|++++|...|+++.+..+
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999765 34445 6666664 448999999999999999998667
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH-
Q 041822 210 PNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTL- 288 (500)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l- 288 (500)
.+..++..+..++.+.|++++|...|+++.+.. +.+..+|..+..+|...|++++|++.|+++.+.. +.+...+..+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~ 252 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK 252 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 789999999999999999999999999998763 3478899999999999999999999999998764 2344445444
Q ss_pred -----------HHHHHccCCHHHHHHHHHhchhCCCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 041822 289 -----------IHGAGLVRNIHQARQLFDEMPKRNLKPD-----IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDN 352 (500)
Q Consensus 289 -----------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 352 (500)
...+.+.|++++|...|+++.+.. |+ ...+..+...+.+.|++++|...++++.+.... +.
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~ 329 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cH
Confidence 788999999999999999998853 34 447889999999999999999999998876432 67
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 041822 353 VTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-TRTVVMLM 394 (500)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll 394 (500)
..|..+..+|...|++++|.+.|+++.+. .|+ ...+..+.
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 89999999999999999999999999874 555 55555554
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.5e-22 Score=198.36 Aligned_cols=371 Identities=10% Similarity=-0.055 Sum_probs=310.8
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHH
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFN 182 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 182 (500)
...+......+.+.|++++|+..|+++.+..| +...+..+..+|.+.|++++|+..|+++.+. .|.+..+|.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 77 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVVEMSTKALEL-----KPDYSKVLL 77 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CSCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-----ChHHHHHHH
Confidence 45677888899999999999999999999876 4678888999999999999999999999887 477889999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCC---------------------------------------------------
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLLSRFAPN--------------------------------------------------- 211 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~--------------------------------------------------- 211 (500)
.+..++.+.|++++|...|+++.+..+++
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC
Confidence 99999999999999999999987633322
Q ss_pred ----------------------------HHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCH
Q 041822 212 ----------------------------NKTMNILLLGFKE---SGDVTAMEMFYHEMVL-----RGF--------RPSV 247 (500)
Q Consensus 212 ----------------------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~g~--------~~~~ 247 (500)
...+......+.. .|+++.|...++++.+ ... +.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 2333333333333 8999999999999988 311 2245
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHH
Q 041822 248 VTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSL 327 (500)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 327 (500)
..+..+...+...|++++|...|+++.+.+ |+...+..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 678888999999999999999999999876 448888999999999999999999999998875 34677899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHH
Q 041822 328 IRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGL 407 (500)
Q Consensus 328 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 407 (500)
...|++++|...|+++.+.... +...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999987554 66788889999999999999999999998753 334678888999999999999999
Q ss_pred HHHHHHHHCCCC-CC----HhHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHH
Q 041822 408 NLWGYLIDRGFC-PH----GHALDLLVTGLCS---RGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDL 479 (500)
Q Consensus 408 ~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 479 (500)
..++.+.+.... ++ ...+..+..+|.. .|++++|...++++.+.. +.+..++..+..++...|++++|...
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999874211 11 3388899999999 999999999999998764 23567788999999999999999999
Q ss_pred HHHHHHhh
Q 041822 480 DRMIKNLQ 487 (500)
Q Consensus 480 ~~~~~~~~ 487 (500)
++......
T Consensus 472 ~~~a~~~~ 479 (514)
T 2gw1_A 472 FEESADLA 479 (514)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 88877653
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.5e-21 Score=192.28 Aligned_cols=398 Identities=12% Similarity=0.061 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIML 146 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 146 (500)
...+..+...+.+.|++++|++.|+.+.+.. |.+...+..+..++...|++++|++.++++.+..|. +...+..+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD--HSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHHH
Confidence 4556777888999999999999999999864 668889999999999999999999999999998776 456788889
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC-------CCCCHH------
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-------FAPNNK------ 213 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-------~~~~~~------ 213 (500)
.++...|++++|...|+.+... ....+..+..+...+....|...++.+... ..|+..
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 171 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSLN---------GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF 171 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC--------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhcC---------CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH
Confidence 9999999999999999644211 011111122222233333444444443221 001111
Q ss_pred ------------------------hHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC--------HHHHHHH
Q 041822 214 ------------------------TMNILLLGFKE--------SGDVTAMEMFYHEMVLRGFRPS--------VVTYNIR 253 (500)
Q Consensus 214 ------------------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~g~~~~--------~~~~~~l 253 (500)
....+...+.. .|++++|..+++.+.+.. |+ ..++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYT 249 (537)
T ss_dssp HTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHH
Confidence 11111111111 123444444444444331 11 1123333
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCH
Q 041822 254 IDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDL 333 (500)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 333 (500)
...+...|++++|.+.|++..+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 344444455555555555554432 334444444444555555555555555444432 12344444555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHH
Q 041822 334 NAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYL 413 (500)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 413 (500)
++|...|+++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 327 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5555555544443222 23444444455555555555555555444331 112334444444445555555555555544
Q ss_pred HHCC-----CCCCHhHHHHHHHHHhcC----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHH
Q 041822 414 IDRG-----FCPHGHALDLLVTGLCSR----------GRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLED 478 (500)
Q Consensus 414 ~~~~-----~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 478 (500)
.+.. .......+.....++... |++++|...++++.+... .+...+..+..++...|+.++|..
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHH
Confidence 4321 000111122223334444 555555555555444321 123344444455555555555554
Q ss_pred HHHHHHH
Q 041822 479 LDRMIKN 485 (500)
Q Consensus 479 ~~~~~~~ 485 (500)
.++....
T Consensus 484 ~~~~al~ 490 (537)
T 3fp2_A 484 LFEDSAI 490 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=3.2e-19 Score=167.17 Aligned_cols=313 Identities=9% Similarity=0.008 Sum_probs=183.1
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHH
Q 041822 68 LVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLS 147 (500)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (500)
..+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...++.+.+..|. ....+..+..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~ 79 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD--FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cchHHHHHHH
Confidence 345566677777788888888888777643 456677777777788888888888888887776554 3356677777
Q ss_pred HHhccccHHHHHHHHHHHHHHHhccccC---CChhhHHHH------------HHHHHcCCCHHHHHHHHHHhhhCCCCCH
Q 041822 148 RISKFQSYEETLEAFDRMEREIFVGIRK---FGSEEFNVL------------LQAFCTQKEMKEARSVFVKLLSRFAPNN 212 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~l------------l~~~~~~~~~~~A~~~~~~m~~~~~~~~ 212 (500)
.+...|++++|...|++..+. .+ .+...+..+ ...+...|++++|.+.++++.+..+.+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 154 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS-----NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDA 154 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhc-----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 777778888888888777654 23 344444444 4566666777777777776665455566
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041822 213 KTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGA 292 (500)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 292 (500)
..+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~- 231 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV- 231 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH-
Confidence 666666666666777777776666666553 2355666666666666667776666666666543 1122222111000
Q ss_pred HccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCh
Q 041822 293 GLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDN----VTYHTMFFGLMKSSGL 368 (500)
Q Consensus 293 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~ 368 (500)
. .......+...+.+.|++++|...++++.+.... +. ..+..+...+.+.|++
T Consensus 232 ----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 232 ----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp ----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCH
T ss_pred ----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCH
Confidence 0 0001112234455555555555555555543222 11 1123344555555555
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHC
Q 041822 369 EGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR 416 (500)
Q Consensus 369 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 416 (500)
++|.+.+++..+.. +.+..++..+..++...|++++|.+.++.+.+.
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555555555431 223455555555555555555555555555553
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=3.7e-19 Score=166.75 Aligned_cols=329 Identities=9% Similarity=0.018 Sum_probs=228.0
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHH
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFN 182 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 182 (500)
...+..+...+...|++++|...|+.+.+..|. +...+..+...+...|++++|...|+++.+. .+.+...|.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~ 75 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIAL-----KMDFTAARL 75 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcchHHH
Confidence 455666677777777777777777777776554 3446666666777777777777777777665 344566677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLLSRFA---PNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
.+...+...|++++|...|+++.+..+ .+...+..+..... ...+..+...+..
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
Confidence 777777777777777777777765433 33333333321100 1112233556677
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 041822 260 KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMEL 339 (500)
Q Consensus 260 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 339 (500)
.|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777654 3456667777777777788888887777777664 33667777777788888888888888
Q ss_pred HHHHHHCCCCCCHHHHH------------HHHHHHHHcCChhHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHHcCC
Q 041822 340 MDEMEEKRIGHDNVTYH------------TMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-T----RTVVMLMKFFCVNFR 402 (500)
Q Consensus 340 ~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~----~~~~~ll~~~~~~~~ 402 (500)
|++..+.... +...+. .+...+.+.|++++|.+.++++.+.. |+ . ..+..+..++...|+
T Consensus 211 ~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 211 VRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccC
Confidence 8777765332 333222 23667889999999999999998753 33 2 335567788899999
Q ss_pred HhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Q 041822 403 VDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS-EASYRMLQRYLVQ 469 (500)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~ 469 (500)
+++|...++...+.. +.+..++..+..+|...|++++|.+.|+++.+. .|+ ...+..+..+...
T Consensus 288 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 288 PVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHH
Confidence 999999999999864 346788999999999999999999999999864 455 4455565555543
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=3.1e-19 Score=177.24 Aligned_cols=374 Identities=10% Similarity=0.029 Sum_probs=286.8
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.....+..+..++...|++++|++.|+.+.+.. |.+..++..+..++...|++++|...|+ .....|+..+ .
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~-----~ 128 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDG-----A 128 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------------
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCCh-----H
Confidence 345777788899999999999999999999864 5678899999999999999999999997 4444443322 2
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhcc--ccCCChh------------------------------hHHHHHHHHHcC-
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVG--IRKFGSE------------------------------EFNVLLQAFCTQ- 191 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~------------------------------~~~~ll~~~~~~- 191 (500)
.+..+...+...+|...++.+....... ...|+.. ....+...+...
T Consensus 129 ~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 208 (537)
T 3fp2_A 129 SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208 (537)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhh
Confidence 2344556677778888888774421000 0001111 222333332222
Q ss_pred -------CCHHHHHHHHHHhhhCCCCCHH-------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 192 -------KEMKEARSVFVKLLSRFAPNNK-------TMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 192 -------~~~~~A~~~~~~m~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
|++++|..+|+++.+..+.+.. ++..+...+...|++++|...++.+.+. .|+...+..+...+
T Consensus 209 ~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 286 (537)
T 3fp2_A 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTL 286 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHH
Confidence 4789999999999875555543 5777778888999999999999999987 56688899999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041822 258 CKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 337 (500)
...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.
T Consensus 287 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 287 ADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp CCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998865 3467889999999999999999999999998875 335678999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHc----------CC
Q 041822 338 ELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK-----FVPKTRTVVMLMKFFCVN----------FR 402 (500)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~~~ll~~~~~~----------~~ 402 (500)
..++++.+.... +...+..+...+...|++++|.+.|+++.+.. .......+......+... |+
T Consensus 365 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 365 AFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 999999887543 56788889999999999999999999987532 111223344455667777 99
Q ss_pred HhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 041822 403 VDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRR 452 (500)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 452 (500)
+++|...++.+.+.. +.+...+..+..+|.+.|++++|.+.|++..+..
T Consensus 444 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 444 FNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999864 3467889999999999999999999999998754
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=9.8e-19 Score=161.93 Aligned_cols=286 Identities=10% Similarity=-0.021 Sum_probs=180.0
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChh
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE 179 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 179 (500)
+.+...+...+..+...|++++|.++++++.+..|.... .+..++..+...|++++|...++++... .+.+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~ 91 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS--CLPVHIGTLVELNKANELFYLSHKLVDL-----YPSNPV 91 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--THHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CcCCHH
Confidence 455666667777777777788888877777776655433 3444556667777777777777777665 355667
Q ss_pred hHHHHHHHHHcCC-CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 180 EFNVLLQAFCTQK-EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 180 ~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
+|..+...+...| ++++|.+.|+++.+..+.+...|..+...+...|++++|...++++.+... .+...+..+...|.
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 7777777777777 777777777777765555667777777777777777777777777766532 23455555666777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCC--------CCCCHhhHHHHHHHHHhc
Q 041822 259 KKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRN--------LKPDIGAYNAMISSLIRC 330 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~ 330 (500)
..|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+...|...
T Consensus 171 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 7777777777777766653 3345566666666666666666666666655421 022234556666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 041822 331 RDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP-KTRTVVMLMKFF 397 (500)
Q Consensus 331 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~ 397 (500)
|++++|...|++..+.... +...+..+...+.+.|++++|.+.|++..+. .| +...+..+..++
T Consensus 250 g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 6666666666665554322 4455555556666666666666666655543 23 344444444444
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.9e-16 Score=155.01 Aligned_cols=353 Identities=9% Similarity=-0.000 Sum_probs=296.4
Q ss_pred HHHHHHHHHHHhh----cCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHc----CCChHHHHHHHHHhHhhCCCCcc
Q 041822 67 TLVENVLGRLFAA----HSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILAR----MRYFDQAWELMSHVQRTHPSLLT 138 (500)
Q Consensus 67 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 138 (500)
......|...+.. .+++++|+..|+.+.+. .++..+..+...+.. .+++++|.+.|++..+.+ +
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~ 110 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----L 110 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----C
Confidence 3445566677776 78999999999999885 367788888898988 899999999999998753 3
Q ss_pred HHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCC
Q 041822 139 LKSMSIMLSRISK----FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT----QKEMKEARSVFVKLLSRFAP 210 (500)
Q Consensus 139 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~ 210 (500)
...+..+...|.. .+++++|...|++..+.+ +..++..+...|.. .++.++|.+.|++..+. .
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~ 181 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--G 181 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 4566667777777 789999999999987653 67788899999987 88999999999999863 3
Q ss_pred CHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCH
Q 041822 211 NNKTMNILLLGFKE----SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK----KGCFGDAMRLFEEMERVACLPSL 282 (500)
Q Consensus 211 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~ 282 (500)
+...+..+...|.. .++.++|..+|+...+.| +...+..+...|.. .+++++|.++|++..+.| +.
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 255 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NS 255 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CH
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 78889999999988 899999999999999876 67788888888886 899999999999998875 45
Q ss_pred HHHHHHHHHHHc----cCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHH
Q 041822 283 QTITTLIHGAGL----VRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRC-----RDLNAAMELMDEMEEKRIGHDNV 353 (500)
Q Consensus 283 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~ 353 (500)
..+..+...|.. .++.++|...|++..+.| +...+..+...|... ++.++|...|++..+.| +..
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~ 329 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DAT 329 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHH
Confidence 666677777777 899999999999998875 566788888888887 89999999999998875 556
Q ss_pred HHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhhHHHHHHHHHHCCCCCCHhHHH
Q 041822 354 TYHTMFFGLMKSS---GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCV----NFRVDLGLNLWGYLIDRGFCPHGHALD 426 (500)
Q Consensus 354 ~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 426 (500)
.+..+...|...| ++++|.+.|++..+.+ +...+..+...+.. .+++++|...|++..+.| +...+.
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~ 403 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQV 403 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHH
Confidence 7777888887766 7899999999998864 56778888888888 799999999999999976 466788
Q ss_pred HHHHHHhc----CCCHHHHHHHHHHHHHcCCC
Q 041822 427 LLVTGLCS----RGRWEEAFECSKQMLVRRRQ 454 (500)
Q Consensus 427 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~ 454 (500)
.+...|.+ .++.++|...|++..+.+..
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 88888888 89999999999999987643
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=3.7e-16 Score=153.03 Aligned_cols=365 Identities=11% Similarity=0.005 Sum_probs=304.8
Q ss_pred HHHHHHHHhhcCCCCCCCHHhHHHHHHHHHc----CCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhc----cccHH
Q 041822 85 KALEFFKFTLQHPHFTPTPDAFEKTLHILAR----MRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISK----FQSYE 156 (500)
Q Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 156 (500)
.+++.+...... .++..+..+...+.. .+++++|...|+...+.+ +...+..+...|.. .++++
T Consensus 25 ~~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 25 VNLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp CCHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHH
Confidence 345566665553 467888888888887 899999999999998752 34567777888888 89999
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh----cCCH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT----QKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE----SGDV 228 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~----~~~~ 228 (500)
+|...|++..+.+ +...+..|...|.. .+++++|...|++..+. -+...+..+...|.. .+++
T Consensus 97 ~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 97 QAVIWYKKAALKG-------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp HHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999987653 67788889999988 88999999999998862 267888889988887 7899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHH
Q 041822 229 TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK----KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGL----VRNIHQ 300 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 300 (500)
++|..+|++..+.| +...+..+...|.. .+++++|+++|++..+.| +...+..+...|.. .+++++
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999999876 77888889999988 899999999999999876 56677777777775 789999
Q ss_pred HHHHHHhchhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CChhHH
Q 041822 301 ARQLFDEMPKRNLKPDIGAYNAMISSLIR----CRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKS-----SGLEGV 371 (500)
Q Consensus 301 a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a 371 (500)
|..+|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|... +++++|
T Consensus 242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 999999998875 56677778888887 899999999999998764 566777788888887 899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----CCCHHHHHHH
Q 041822 372 CKLYDRMIEGKFVPKTRTVVMLMKFFCVNF---RVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS----RGRWEEAFEC 444 (500)
Q Consensus 372 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 444 (500)
.+.|++..+.+ +...+..+...+...| +.++|.+.+++..+.| +...+..+...|.. .+++++|...
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99999998865 4456667777777656 7899999999999875 56788888888988 8999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH----cCchhHHHHHHHHHHHhh
Q 041822 445 SKQMLVRRRQVSEASYRMLQRYLVQ----ANANEKLEDLDRMIKNLQ 487 (500)
Q Consensus 445 ~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~ 487 (500)
|++..+.| +...+..+...|.. .++.++|..+++......
T Consensus 390 ~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 390 MRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999876 46677788888888 799999999988887765
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.1e-18 Score=158.56 Aligned_cols=265 Identities=8% Similarity=-0.009 Sum_probs=138.2
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLG 221 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~ 221 (500)
+......+...|++++|+++|+++.+. .+.+...+..++..+...|++++|..+++++.+..+.+...+..+...
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEK-----DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 444455555566666666666666554 344555555566666666666666666666665444555666666666
Q ss_pred HHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 041822 222 FKESG-DVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQ 300 (500)
Q Consensus 222 ~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 300 (500)
+...| ++++|...+++..+.. +.+...|..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 66666 6666666666665543 2234455556666666666666666666655543 1223344445555555555555
Q ss_pred HHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCChhHHH
Q 041822 301 ARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKR--------IGHDNVTYHTMFFGLMKSSGLEGVC 372 (500)
Q Consensus 301 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~ 372 (500)
|.+.++++.+.. +.+..++..+...|...|++++|...+++..+.. .......+..+...+...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 555555555543 2234455555555555555555555555544321 0112234444444444444555554
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHH
Q 041822 373 KLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLID 415 (500)
Q Consensus 373 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 415 (500)
+.+++..+.. +.+...+..+..++...|++++|.+.++++.+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 4444444321 11233344444444444444444444444443
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=1.2e-18 Score=164.09 Aligned_cols=304 Identities=10% Similarity=-0.036 Sum_probs=168.6
Q ss_pred cCChHHHHH-HHHHhhcCCCCCC--CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHH
Q 041822 80 HSNGLKALE-FFKFTLQHPHFTP--TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYE 156 (500)
Q Consensus 80 ~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (500)
.+++++|++ .|+.......-.| +...+..+...+...|++++|...++++.+..|. +...+..+...+...|+++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCcCHH
Confidence 466777777 6766654321112 2345666777777777777777777777776554 3456666777777777777
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYH 236 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 236 (500)
+|...|+++... .+.+..++..+...+...|++++|...|+++.+..+.+...+..+... ..
T Consensus 116 ~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 116 LAISALRRCLEL-----KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp HHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------------
T ss_pred HHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------hh------
Confidence 777777777665 355667777777777777777777777777765433333333221000 00
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCC
Q 041822 237 EMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLP-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKP 315 (500)
Q Consensus 237 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 315 (500)
. ..+ ...+.. +..+...|++++|...|+++.+..... +..++..+...+...|++++|...++++.+.. +.
T Consensus 178 -~----~~~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G----AGL-GPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h----hcc-cHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 000 000111 222225566666666666665543110 35556666666666666666666666665542 22
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC----------C
Q 041822 316 DIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFV----------P 385 (500)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------p 385 (500)
+..++..+...|...|++++|...|+++.+.... +...+..+...|.+.|++++|...|+++.+.... .
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 4556666666666666666666666666554322 4555666666666666666666666665532100 0
Q ss_pred CHHHHHHHHHHHHHcCCHhhHHHHHHH
Q 041822 386 KTRTVVMLMKFFCVNFRVDLGLNLWGY 412 (500)
Q Consensus 386 ~~~~~~~ll~~~~~~~~~~~a~~~~~~ 412 (500)
...++..+..++...|+.+.|..++.+
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 145666666666777777776666653
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=7.6e-19 Score=165.50 Aligned_cols=267 Identities=9% Similarity=-0.043 Sum_probs=187.1
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
..+..+...+.+.|++++|...|+++.+..+.+..++..+..++.+.|++++|...++++.+.. +.+..++..+...|.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3445555555555555555555555554444455555555555555555555555555555442 224455555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHH---------------HHHHHHHccCCHHHHHHHHHhchhCCCCC-CHhhHHH
Q 041822 259 KKGCFGDAMRLFEEMERVACLPSLQTIT---------------TLIHGAGLVRNIHQARQLFDEMPKRNLKP-DIGAYNA 322 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~---------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 322 (500)
..|++++|++.++++.+... .+...+. ..+..+...|++++|...++++.+..... +..++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 55555555555555554331 1111111 02333448899999999999998864221 5788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 041822 323 MISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFR 402 (500)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 402 (500)
+...|.+.|++++|...|+++.+.... +...+..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999999876443 67889999999999999999999999998753 3457889999999999999
Q ss_pred HhhHHHHHHHHHHCCCCC----------CHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041822 403 VDLGLNLWGYLIDRGFCP----------HGHALDLLVTGLCSRGRWEEAFECSKQML 449 (500)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 449 (500)
+++|...++.+.+..... ...+|..+..+|...|++++|..++++..
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 999999999998742111 26789999999999999999999877543
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=4.6e-16 Score=153.92 Aligned_cols=409 Identities=10% Similarity=0.019 Sum_probs=295.9
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
+...|..++.. ...|++++|..+|+.+.+. +|.+...|...+..+.+.|++++|.++|+++.+..| +...|...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p---~~~lw~~~ 85 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL---HIDLWKCY 85 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC---CHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---ChHHHHHH
Confidence 34456666664 6789999999999999986 477888999999999999999999999999999776 34456555
Q ss_pred HHHH-hccccHHHHHH----HHHHHHHHHhccccCCChhhHHHHHHHHHc---------CCCHHHHHHHHHHhhhCCCCC
Q 041822 146 LSRI-SKFQSYEETLE----AFDRMEREIFVGIRKFGSEEFNVLLQAFCT---------QKEMKEARSVFVKLLSRFAPN 211 (500)
Q Consensus 146 ~~~~-~~~g~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~~~A~~~~~~m~~~~~~~ 211 (500)
+... ...|+.++|.+ +|++..... |..+.+...|...+....+ .|+++.|..+|++.++ .+.+
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~--g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~ 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKI--GMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMI 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHT--TTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhh
Confidence 5422 34566666655 666655431 2234567788888877655 6889999999999997 3322
Q ss_pred --HHhHHHHHHHH-------------HhcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHh
Q 041822 212 --NKTMNILLLGF-------------KESGDVTAMEMFYHEMV------LRG---FRPS--------VVTYNIRIDGYCK 259 (500)
Q Consensus 212 --~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~g---~~~~--------~~~~~~li~~~~~ 259 (500)
...|....... .+.++++.|..++.++. +.. +.|+ ...|...+.....
T Consensus 163 ~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~ 242 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242 (530)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence 23343322211 12345667777766532 221 2343 2456665544332
Q ss_pred c----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHhchhCCCCCCH
Q 041822 260 K----GCF----GDAMRLFEEMERVACLPSLQTITTLIHGAGL-------VRNIH-------QARQLFDEMPKRNLKPDI 317 (500)
Q Consensus 260 ~----g~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~ 317 (500)
. ++. .++..+|++..... +-+...|..+...+.+ .|+++ +|..+|++..+.-.+-+.
T Consensus 243 ~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 243 NPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp CSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred CCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 2 232 37788999988753 4467788888887775 78877 899999999873234468
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041822 318 GAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHD-NVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKF 396 (500)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 396 (500)
..|..++..+.+.|++++|..+|+++.+.... + ...|...+..+.+.|++++|.++|++..+.. ..+...|......
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHH
Confidence 88999999999999999999999999986432 3 3578888888899999999999999998753 2223333332222
Q ss_pred -HHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCC--HHHHHHHHHHHHHcCc
Q 041822 397 -FCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRR-QVS--EASYRMLQRYLVQANA 472 (500)
Q Consensus 397 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~--~~~~~~l~~~~~~~~~ 472 (500)
+...|+.+.|..+|+..++.. +.+...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 335899999999999998853 33678899999999999999999999999998642 332 4477788888888999
Q ss_pred hhHHHHHHHHHHHhh
Q 041822 473 NEKLEDLDRMIKNLQ 487 (500)
Q Consensus 473 ~~~~~~~~~~~~~~~ 487 (500)
.+.+..+.+.+.+..
T Consensus 479 ~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 479 LASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999988876654
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=7.3e-18 Score=158.64 Aligned_cols=265 Identities=10% Similarity=-0.040 Sum_probs=155.2
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDG 256 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 256 (500)
+...|..+...+.+.|++++|...|+++.+..+.+..+|..+..++.+.|++++|...|+++.+.. +.+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344567777777777777777777777776556667777777777777777777777777776653 2346677777777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHccCCHHHHHHHHHhchhCCCC-CCHhhHHHHH
Q 041822 257 YCKKGCFGDAMRLFEEMERVACLPS-----------LQTITTLIHGAGLVRNIHQARQLFDEMPKRNLK-PDIGAYNAMI 324 (500)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~~~~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li 324 (500)
|...|++++|++.|+++.+.. |+ ...+..+...+...|++++|.+.++++.+.... .+..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 777777777777777776643 22 112223345556666666666666666554311 1455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHh
Q 041822 325 SSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVD 404 (500)
Q Consensus 325 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 404 (500)
..|...|++++|.+.|+++.+.... +...|..+..+|...|++++|.+.|+++.+.. +.+..++..+..++...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 6666666666666666666554332 45556666666666666666666666655432 222555555666666666666
Q ss_pred hHHHHHHHHHHCCC---C--------CCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 041822 405 LGLNLWGYLIDRGF---C--------PHGHALDLLVTGLCSRGRWEEAFECSK 446 (500)
Q Consensus 405 ~a~~~~~~~~~~~~---~--------~~~~~~~~li~~~~~~g~~~~A~~~~~ 446 (500)
+|...++++.+... . .+..+|..+..++...|+.+.+..+.+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666666554210 0 023455566666666666655555443
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=8.1e-18 Score=158.31 Aligned_cols=270 Identities=10% Similarity=-0.057 Sum_probs=119.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhc
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISK 151 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (500)
.++..+.+.|++++|++.|+.+.+.. +.+..++..+..++...|++++|++.|+++.+..|. +...+..+...|..
T Consensus 70 ~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 70 EEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN--NLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHc
Confidence 34444555555555555555555432 344555555555555555555555555555554433 23345555555555
Q ss_pred cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHH
Q 041822 152 FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAM 231 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a 231 (500)
.|++++|...|+++.+.. +.+...+..+ ......+..+...+.+.|++++|
T Consensus 146 ~g~~~~A~~~~~~al~~~-----p~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN-----PKYKYLVKNK------------------------KGSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC-----HHHHCC-------------------------------------------CCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC-----ccchHHHhhh------------------------ccchHHHHHHHHHHhhhhhHHHH
Confidence 555555555555554431 1111111111 00011122234444444444444
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 232 EMFYHEMVLRGFR-PSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 232 ~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
...++++.+.... ++..++..+...|...|++++|++.|++..+.. +.+..+|..+..+|...|++++|...|+++.+
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444443211 134444444444444555555555554444432 22344444455555555555555555554444
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 041822 311 RNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIG-----------HDNVTYHTMFFGLMKSSGLEGVCKLYD 376 (500)
Q Consensus 311 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~ 376 (500)
.. +.+..++..+..+|.+.|++++|...|+++.+.... .+...|..+..++...|+.+.+.+...
T Consensus 276 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 276 IQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred cC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 32 123444555555555555555555555544432100 023445555555555565555555443
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=3.2e-17 Score=151.44 Aligned_cols=264 Identities=11% Similarity=-0.029 Sum_probs=156.8
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
...+..+...+...|++++|..+|+++.+..+.+..++..+..++...|++++|...++++.+.. +.+...+..+...|
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34456666666677777777777777665445566666667777777777777777777666653 23556666666777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC-HHHHHHH--------------HH-HHHccCCHHHHHHHHHhchhCCCCCCHhhHH
Q 041822 258 CKKGCFGDAMRLFEEMERVACLPS-LQTITTL--------------IH-GAGLVRNIHQARQLFDEMPKRNLKPDIGAYN 321 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 321 (500)
...|++++|.+.++++.+.. |+ ...+..+ .. .+...|++++|.+.++++.+.. +.+..++.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 77777777777777766543 22 1112111 11 2555566666666666666543 22555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 041822 322 AMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNF 401 (500)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 401 (500)
.+...|...|++++|.+.++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+..++..+..++...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 6666666666666666666666554322 45556666666666666666666666665432 223555566666666666
Q ss_pred CHhhHHHHHHHHHHCCCCC-----------CHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 041822 402 RVDLGLNLWGYLIDRGFCP-----------HGHALDLLVTGLCSRGRWEEAFECSKQ 447 (500)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 447 (500)
++++|.+.++++.+..... +...|..+..++.+.|++++|..++++
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6666666666665532111 245556666666666666666666543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=3.9e-17 Score=150.93 Aligned_cols=261 Identities=8% Similarity=-0.045 Sum_probs=125.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLL 185 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll 185 (500)
+......+...|++++|..+++++.+..|. +...+..+...+...|++++|...|+++.+. .+.+..++..+.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la 96 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE--REEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDIAVHAALA 96 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CcCCHHHHHHHH
Confidence 334444445555555555555555544333 2334444444555555555555555555443 233444555555
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041822 186 QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNIL--------------LL-GFKESGDVTAMEMFYHEMVLRGFRPSVVTY 250 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 250 (500)
..+...|++++|.+.++++.+..+.+...+..+ .. .+...|++++|...++++.+.. +.+...+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 555555555555555555554323233333222 11 2444555555555555555442 2244555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhc
Q 041822 251 NIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRC 330 (500)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 330 (500)
..+...|...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...|...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 555555555566666655555555433 2234445555555555555555555555554432 22344455555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCChhHHHHHHH
Q 041822 331 RDLNAAMELMDEMEEKRIGH-----------DNVTYHTMFFGLMKSSGLEGVCKLYD 376 (500)
Q Consensus 331 g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~ 376 (500)
|++++|.+.|+++.+..... +...|..+..++.+.|++++|..+++
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55555555555544432111 23444445555555555555555443
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=177.84 Aligned_cols=161 Identities=11% Similarity=0.159 Sum_probs=133.9
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhh----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLS----RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNI 252 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 252 (500)
-..+||++|++||+.|++++|.++|+.|.+ |+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 445899999999999999999999988753 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCC------HhhHHHHHH
Q 041822 253 RIDGYCKKGCF-GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPD------IGAYNAMIS 325 (500)
Q Consensus 253 li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~ 325 (500)
+|+++|+.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998766554 444445555 3334443 556667777
Q ss_pred HHHhcCC---------HHHHHHHHHH
Q 041822 326 SLIRCRD---------LNAAMELMDE 342 (500)
Q Consensus 326 ~~~~~g~---------~~~a~~~~~~ 342 (500)
.|.+.+. .++-.+.|++
T Consensus 281 l~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 281 VYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HHccCCCCcCccccCCHHHHHHHHHH
Confidence 7776652 3555555553
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=9.6e-16 Score=149.46 Aligned_cols=274 Identities=11% Similarity=-0.014 Sum_probs=182.0
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcC-------CCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhC----
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQH-------PHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTH---- 133 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 133 (500)
.....++.|..++...|++++|++.|+++.+. ..-+....+|..+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567889999999999999999999887651 0123345678999999999999999999998887631
Q ss_pred -C-CCccHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHH---HHcCCCHHHHHHHHHHhhh
Q 041822 134 -P-SLLTLKSMSIMLSRISK--FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQA---FCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 134 -~-~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~A~~~~~~m~~ 206 (500)
+ ......++.....++.. .+++++|+..|++..+. .|.+...+..+..+ +...++.++|++.+++..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 1 11233444444434433 45799999999998876 45667777666655 3456778889999988887
Q ss_pred CCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 041822 207 RFAPNNKTMNILLLGFKE----SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL 282 (500)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 282 (500)
-.+.+..++..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|++.+++..+.. +-+.
T Consensus 204 l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 281 (472)
T 4g1t_A 204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNA 281 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChH
Confidence 556677777777665554 456788999998887764 3467788889999999999999999999988765 2345
Q ss_pred HHHHHHHHHHHcc-------------------CCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 283 QTITTLIHGAGLV-------------------RNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 283 ~~~~~ll~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 343 (500)
.++..+...|... +..+.|...++...+.+ +.+..++..+...|...|++++|++.|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 5566655554321 11334444444444332 123344445555555555555555555555
Q ss_pred HHC
Q 041822 344 EEK 346 (500)
Q Consensus 344 ~~~ 346 (500)
.+.
T Consensus 361 L~~ 363 (472)
T 4g1t_A 361 FSK 363 (472)
T ss_dssp HHS
T ss_pred Hhc
Confidence 443
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=8.3e-19 Score=174.85 Aligned_cols=151 Identities=8% Similarity=0.050 Sum_probs=113.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 041822 316 DIGAYNAMISSLIRCRDLNAAMELMDEMEE---KRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVM 392 (500)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 392 (500)
-..||+++|++|++.|++++|.++|++|.+ .|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456888888888888888888888877764 47888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCH-hhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHH
Q 041822 393 LMKFFCVNFRV-DLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVS------EASYRMLQR 465 (500)
Q Consensus 393 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~l~~ 465 (500)
+|.++|+.|+. +.|.++|++|.+.|+.||..+|++++.++.+. .+++.++++ ..++.|+ ..|...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 88888888874 67888888888888888888888887655443 333333444 3345544 334445555
Q ss_pred HHHHcC
Q 041822 466 YLVQAN 471 (500)
Q Consensus 466 ~~~~~~ 471 (500)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555443
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=9.7e-15 Score=144.41 Aligned_cols=382 Identities=12% Similarity=0.054 Sum_probs=276.2
Q ss_pred HHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 041822 90 FKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREI 169 (500)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 169 (500)
|+..++.. |-+...|..++.. ...|++++|..+|+++.+..|. +...|...+..+.+.|++++|..+|++....
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~--~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~- 75 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPS--SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK- 75 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Confidence 34444432 5678889999984 7889999999999999998765 5678899999999999999999999998765
Q ss_pred hccccCCChhhHHHHHHHH-HcCCCHHHHHH----HHHHhhh--CC-CCCHHhHHHHHHHHHh---------cCCHHHHH
Q 041822 170 FVGIRKFGSEEFNVLLQAF-CTQKEMKEARS----VFVKLLS--RF-APNNKTMNILLLGFKE---------SGDVTAME 232 (500)
Q Consensus 170 ~~~~~~~~~~~~~~ll~~~-~~~~~~~~A~~----~~~~m~~--~~-~~~~~~~~~l~~~~~~---------~~~~~~a~ 232 (500)
.|+...|...+... ...|+.+.|.+ +|+...+ |. +++...|...+....+ .|+++.|.
T Consensus 76 -----~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~ 150 (530)
T 2ooe_A 76 -----VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVR 150 (530)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHH
T ss_pred -----CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHH
Confidence 34777888777543 45677776655 7777764 33 3466778877776654 68899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH-------------HhcCChhHHHHHHHHHH------HcC---CCCC--------H
Q 041822 233 MFYHEMVLRGFRPSVVTYNIRIDGY-------------CKKGCFGDAMRLFEEME------RVA---CLPS--------L 282 (500)
Q Consensus 233 ~~~~~~~~~g~~~~~~~~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~~---~~~~--------~ 282 (500)
.+|++.++.........|....... .+.+++..|..++.++. +.. ++|+ .
T Consensus 151 ~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 151 RVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 9999998842121234444333211 12456777877777632 221 2443 2
Q ss_pred HHHHHHHHHHHcc----CCH----HHHHHHHHhchhCCCCCCHhhHHHHHHHHHh-------cCCHH-------HHHHHH
Q 041822 283 QTITTLIHGAGLV----RNI----HQARQLFDEMPKRNLKPDIGAYNAMISSLIR-------CRDLN-------AAMELM 340 (500)
Q Consensus 283 ~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~ 340 (500)
..|...+...... ++. +.+..+|++..... +.+...|..+...+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 4555555433221 232 47778898888763 3467888888888875 79987 899999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHHcCCHhhHHHHHHHHHHCCC
Q 041822 341 DEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPK-T-RTVVMLMKFFCVNFRVDLGLNLWGYLIDRGF 418 (500)
Q Consensus 341 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 418 (500)
++..+.-..-+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|+++.|..+|++..+..
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~- 386 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 386 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 99886212236788999999999999999999999999984 554 3 578888888889999999999999999853
Q ss_pred CCCHhHHHHHHHH-HhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHhh
Q 041822 419 CPHGHALDLLVTG-LCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNLQ 487 (500)
Q Consensus 419 ~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 487 (500)
+.+...|...+.. +...|+.++|..+|++..+.. +-+...|..++..+.+.|+.+.|..+++......
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 2233333332222 346899999999999998753 2256788889999999999999999999887664
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=7.2e-16 Score=139.41 Aligned_cols=248 Identities=11% Similarity=0.078 Sum_probs=132.3
Q ss_pred HcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCC
Q 041822 114 ARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKE 193 (500)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 193 (500)
...|+++.|++.++.+....|.. .......+.++|...|+++.|+..++.. .+++..++..+...+...++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~-~~e~~~~l~r~yi~~g~~~~al~~~~~~--------~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPER-DVERDVFLYRAYLAQRKYGVVLDEIKPS--------SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHH-HHHHHHHHHHHHHHTTCHHHHHHHSCTT--------SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHhcccCCchh-hHHHHHHHHHHHHHCCCHHHHHHHhccc--------CChhHHHHHHHHHHHcCCCc
Confidence 34455555555555443322211 1112233445555555555555544321 23445555566666666666
Q ss_pred HHHHHHHHHHhhh-C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041822 194 MKEARSVFVKLLS-R-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFE 271 (500)
Q Consensus 194 ~~~A~~~~~~m~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (500)
.++|++.++++.. + .|.+...+..+..++...|++++|...+++ +.+...+..++..|.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666666666554 2 233445555555666666666666666554 2355566666666666666666666666
Q ss_pred HHHHcCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 041822 272 EMERVACLPSLQTI---TTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRI 348 (500)
Q Consensus 272 ~m~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 348 (500)
++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++..+...
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 666543 332111 112222333456666666666665552 33555666666666666666666666666555433
Q ss_pred CCCHHHHHHHHHHHHHcCChhH-HHHHHHHHHh
Q 041822 349 GHDNVTYHTMFFGLMKSSGLEG-VCKLYDRMIE 380 (500)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~ 380 (500)
. +..++..++..+...|+.++ +.++++++.+
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2 45555556666666666544 3455555554
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1.1e-17 Score=154.68 Aligned_cols=239 Identities=10% Similarity=0.052 Sum_probs=71.9
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHH
Q 041822 79 AHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEET 158 (500)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 158 (500)
+.|+.++|.++++++ +++.+|..++.++.+.|++++|++.|.+. .+...+..++..+...|++++|
T Consensus 15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHH
Confidence 345566666666654 33346666666666666666666666432 1233455555666666666666
Q ss_pred HHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 159 LEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEM 238 (500)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 238 (500)
...++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 81 i~yl~~ark~------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 81 VKYLQMARKK------ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ----------------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHh------CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6655544432 1234556666666666666666655553 245556666666666666666666666644
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHh
Q 041822 239 VLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIG 318 (500)
Q Consensus 239 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 318 (500)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHh
Confidence 25666666666666666666666655 145666666666666666666644433322 1222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 041822 319 AYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMK 364 (500)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 364 (500)
-...++..|.+.|++++|..+++...... +-....|+-+.-.|++
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 23346666666666666666666555443 2234455555444444
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1.2e-15 Score=141.28 Aligned_cols=361 Identities=9% Similarity=0.040 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
.+.+|..|+..+...|++++|++.|.+. +|..+|..++..+...|++++|+..++...+..+ +..+...+
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~---~~~i~~~L 100 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR---ESYVETEL 100 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc---cchhHHHH
Confidence 3458889999999999999999999653 5777999999999999999999998887776422 23456778
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
+.+|.+.|+++++.+.++ +|+..+|+.++..|...|++++|...|..+ ..|..++.++.+.
T Consensus 101 i~~Y~Klg~l~e~e~f~~-----------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~L 161 (449)
T 1b89_A 101 IFALAKTNRLAELEEFIN-----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHL 161 (449)
T ss_dssp --------CHHHHTTTTT-----------CC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHc-----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHh
Confidence 999999999999887774 356679999999999999999999999988 3699999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 041822 226 GDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLF 305 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 305 (500)
|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++|..++
T Consensus 162 g~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lL 230 (449)
T 1b89_A 162 GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITML 230 (449)
T ss_dssp TCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999888 278999999999999999999966555422 33344557889999999999999999
Q ss_pred HhchhCCCCCCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 041822 306 DEMPKRNLKPDIGAYNAMISSLIRC--RDLNAAMELMDEMEEKRIGH------DNVTYHTMFFGLMKSSGLEGVCKLYDR 377 (500)
Q Consensus 306 ~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (500)
+...... +-....|+-|...|++- +++.+.++.|..- .++.| +...|.-++..|.+.++++.|...+
T Consensus 231 e~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm-- 305 (449)
T 1b89_A 231 EAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM-- 305 (449)
T ss_dssp HHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH--
T ss_pred HHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH--
Confidence 9988765 44677788887777765 3455555555321 12211 4567889999999999999887754
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHH-------------HHHHHHhcCCCHHHHHHH
Q 041822 378 MIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALD-------------LLVTGLCSRGRWEEAFEC 444 (500)
Q Consensus 378 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~li~~~~~~g~~~~A~~~ 444 (500)
.+. .|+..--..+.....+..+.+---+...-.++. .|. ..+ ..+..+.+.|...-+...
T Consensus 306 -~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~y 378 (449)
T 1b89_A 306 -MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPY 378 (449)
T ss_dssp -HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHH
T ss_pred -HhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHH--HHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHH
Confidence 332 122111122233334444443333333322221 121 233 334444555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHH
Q 041822 445 SKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDR 481 (500)
Q Consensus 445 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 481 (500)
+......+ +...-.++-..|....+++..+.-.+
T Consensus 379 l~~v~~~n---~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 379 LRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 55554332 33444566667777777777665443
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.6e-15 Score=137.08 Aligned_cols=250 Identities=9% Similarity=0.001 Sum_probs=151.1
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 041822 187 AFCTQKEMKEARSVFVKLLSRFAPN--NKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFG 264 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 264 (500)
.....|++..|+..++..... .|+ ......+.++|...|+++.|...++. .-.|+..++..+...+...|+.+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~-~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS-SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHhcccC-CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 344566666666666655432 122 23445556667777777666654432 12445566666666666677777
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 265 DAMRLFEEMERVACLP-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 265 ~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 343 (500)
+|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777766655333 344455555666777777777777665 245666667777777777777777777777
Q ss_pred HHCCCCCCHHHH---HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCC
Q 041822 344 EEKRIGHDNVTY---HTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420 (500)
Q Consensus 344 ~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (500)
.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++++.. +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 6653 332211 11222233346777777777777664 23456666777777777777777777777777643 23
Q ss_pred CHhHHHHHHHHHhcCCCHHH-HHHHHHHHHHc
Q 041822 421 HGHALDLLVTGLCSRGRWEE-AFECSKQMLVR 451 (500)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 451 (500)
+..++..++..+...|+.++ +.++++++.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 55666667777777777655 45667766643
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=6.9e-14 Score=144.27 Aligned_cols=360 Identities=11% Similarity=0.085 Sum_probs=244.6
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCC-CCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPH-FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
.|..+ ....+.|...|.+.+|+++++++...+. |.-+....+.++.+..+. +..+..+..+..... + ..
T Consensus 984 ~PeeV-s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-----d---~~ 1053 (1630)
T 1xi4_A 984 DPEEV-SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-----D---AP 1053 (1630)
T ss_pred CHHHh-HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-----c---HH
Confidence 33344 3556778899999999999999985432 334455566666666666 456666555554421 1 23
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHH
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFK 223 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~ 223 (500)
.+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~---------~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV---------NTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC---------HHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHH
Confidence 356667788999999999888631 1122233322 6778888888887663 5778888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 041822 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQ 303 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 303 (500)
..|++++|...|.+. -|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.++++....
T Consensus 1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence 888888888887553 277788888888888888888888888777654 343334457888888888876444
Q ss_pred HHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 041822 304 LFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF 383 (500)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 383 (500)
+. + .++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.
T Consensus 1189 fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1189 FI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred HH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 42 1 335566777888888888888888888764 47788888888888888888888775
Q ss_pred CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 041822 384 VPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRML 463 (500)
Q Consensus 384 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 463 (500)
-+..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++...... +-....|.-+
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 3457788788888888888877765543 33455667788888888888888888887766322 1223344445
Q ss_pred HHHHHHcCchhHHHHHHHHHHHhhc
Q 041822 464 QRYLVQANANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (500)
..+|.+- ..+...+..+...+...
T Consensus 1321 aiLyaKy-~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1321 AILYSKF-KPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHHhC-CHHHHHHHHHHHHHhcc
Confidence 4444442 34444444444444433
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=6.8e-14 Score=136.30 Aligned_cols=374 Identities=7% Similarity=-0.081 Sum_probs=250.9
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh-------CCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRT-------HPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG 172 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 172 (500)
+.....|+.+..++...|++++|++.|++..+. ........++..+...|...|++++|...+++.......-
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567899999999999999999999887653 1123345678888999999999999999999876543211
Q ss_pred c---cCCChhhHHHHHHHHHc--CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCC
Q 041822 173 I---RKFGSEEFNVLLQAFCT--QKEMKEARSVFVKLLSRFAPNNKTMNILLLGF---KESGDVTAMEMFYHEMVLRGFR 244 (500)
Q Consensus 173 ~---~~~~~~~~~~ll~~~~~--~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~g~~ 244 (500)
. ......++..+..++.. .+++++|...|++..+-.|.+...+..+..++ ...++.++|...+++..+.. +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 0 11234566666655554 45799999999999975566777776666554 34577788888888887763 2
Q ss_pred CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhH
Q 041822 245 PSVVTYNIRIDGYCK----KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAY 320 (500)
Q Consensus 245 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 320 (500)
.+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +-+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 355666666555544 467889999999988765 4567788899999999999999999999998864 3356667
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 321 NAMISSLIRC-------------------RDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 321 ~~li~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
..+...|... +..+.|...++...+.... +...+..+...|...|++++|.+.|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6666665432 2356777888877765443 5567778889999999999999999998876
Q ss_pred CCCCCHH--HHHHHHH-HHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH
Q 041822 382 KFVPKTR--TVVMLMK-FFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEA 458 (500)
Q Consensus 382 ~~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 458 (500)
...+... .+..+.. .....|+.++|...+.+.++.. |+...... ..+.+.+++++..+.+ +.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSKN-GADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHhC-CCCHH
Confidence 4333221 2222222 2346789999999999998853 54332222 2234455566655443 23567
Q ss_pred HHHHHHHHHHHcCchhHHHHHHHHHHHhhcc
Q 041822 459 SYRMLQRYLVQANANEKLEDLDRMIKNLQAV 489 (500)
Q Consensus 459 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (500)
+|..+..+|...|+.++|.+.++..-+....
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 8889999999999999999998887776553
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=4.4e-13 Score=138.45 Aligned_cols=390 Identities=11% Similarity=0.096 Sum_probs=282.8
Q ss_pred ccCCCCchhHHHHHHHHHhcCCCCCCCCchhhhhhCCCCC-CCChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCC
Q 041822 23 LFSTTTQSSEIERITRIINDHPFPDQPLHPTLLQHLPQTT-PLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTP 101 (500)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 101 (500)
.++.+..+..++...+.......|...+ ..+.+-+..++ -......-++|++...+. +..+..+..+.....
T Consensus 978 aL~e~~~PeeVs~~vKaf~~aglp~Eai-eLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----- 1050 (1630)
T 1xi4_A 978 ALSETQDPEEVSVTVKAFMTADLPNELI-ELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----- 1050 (1630)
T ss_pred hcccccCHHHhHHHHHHHHhCCCHHHHH-HHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-----
Confidence 4455555555665555555333332211 11112121111 113345556677666665 667777766665421
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 102 TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 102 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
....+...+...|.+++|..+|++... .......+ +...+++++|.+..+++. +..+|
T Consensus 1051 ---d~~eIA~Iai~lglyEEAf~IYkKa~~------~~~A~~VL---ie~i~nldrAiE~Aervn----------~p~vW 1108 (1630)
T 1xi4_A 1051 ---DAPDIANIAISNELFEEAFAIFRKFDV------NTSAVQVL---IEHIGNLDRAYEFAERCN----------EPAVW 1108 (1630)
T ss_pred ---cHHHHHHHHHhCCCHHHHHHHHHHcCC------HHHHHHHH---HHHHhhHHHHHHHHHhcC----------CHHHH
Confidence 144588889999999999999998631 22222333 237789999999988652 56789
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 261 (500)
..+..++.+.|++++|.+.|.+. .|...|..++.++.+.|++++|.+++....+.. ++....+.++.+|++.+
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc
Confidence 99999999999999999999775 388889999999999999999999998877663 34444556999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 262 CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMD 341 (500)
Q Consensus 262 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 341 (500)
++++..... + .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.++
T Consensus 1182 rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1182 RLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred CHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 988644332 2 256777888999999999999999999985 489999999999999999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCC
Q 041822 342 EMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPH 421 (500)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 421 (500)
+.. +..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|..+++..+... +-+
T Consensus 1246 KA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH 1313 (1630)
T 1xi4_A 1246 KAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAH 1313 (1630)
T ss_pred HhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhH
Confidence 762 779999999999999999999887654 34456677789999999999999999998887654 345
Q ss_pred HhHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCchhHHHH
Q 041822 422 GHALDLLVTGLCSR--GRWEEAFECSKQMLVRRRQV------SEASYRMLQRYLVQANANEKLED 478 (500)
Q Consensus 422 ~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~ 478 (500)
...|+-+..+|++. ++..++.++|..-. ++.+ +...|.-++-.|.+.|+++.|..
T Consensus 1314 ~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 56777777777654 44555555554322 2222 35668888889999999998773
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=4.5e-15 Score=128.19 Aligned_cols=196 Identities=12% Similarity=0.027 Sum_probs=81.0
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 102 TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 102 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
+...+..+...+...|++++|...|+...+..|. +...+..+...+.+.|++++|+..|++..+. .|.+...+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~ 76 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ--DPEALYWLARTQLKLGLVNPALENGKTLVAR-----TPRYLGGY 76 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHH
Confidence 3334444444444444444444444444443332 2223333444444444444444444444433 23334444
Q ss_pred HHHHHHHHcC-----------CCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041822 182 NVLLQAFCTQ-----------KEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY 250 (500)
Q Consensus 182 ~~ll~~~~~~-----------~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 250 (500)
..+..++... |++++|+..|++..+..|.+...+..+..++...|++++|...|++..+.. .+...+
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 4444444444 444444444444444333344444444444445555555555554444443 344444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 041822 251 NIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDE 307 (500)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 307 (500)
..+..+|...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444445555555555555555444432 12333444444444444444444444443
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=4.2e-15 Score=133.54 Aligned_cols=164 Identities=10% Similarity=-0.094 Sum_probs=64.4
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
..+|..+...+...|++++|.+.|+++.+..+.+..++..+..++.+.|++++|...++++.+. .|+.......+..+
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLA 154 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence 3334444444444444444444444444322333344444444444444444444444444433 12222222222223
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCC---CHhhHHHHHHHHHhcCCHH
Q 041822 258 CKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKP---DIGAYNAMISSLIRCRDLN 334 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 334 (500)
...|++++|...+++..... +++...+ .++..+...++.++|.+.+....+..... +..++..+...|.+.|+++
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 232 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHH
Confidence 33344444444444443322 1121222 23333344444444444444443321100 1233444444444444444
Q ss_pred HHHHHHHHHHH
Q 041822 335 AAMELMDEMEE 345 (500)
Q Consensus 335 ~a~~~~~~~~~ 345 (500)
+|...|++...
T Consensus 233 ~A~~~~~~al~ 243 (275)
T 1xnf_A 233 SATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 44444444444
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.6e-14 Score=126.97 Aligned_cols=225 Identities=12% Similarity=0.049 Sum_probs=122.3
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGF--RPS----VVTYN 251 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~ 251 (500)
...|..+...+...|++++|...|+++.+.. .+..++..+..++...|++++|...++...+... .++ ...+.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3455555666666666666666666655422 5555555666666666666666665555554311 011 34455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcC
Q 041822 252 IRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCR 331 (500)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 331 (500)
.+...|...|++++|.+.|++..+.. |+. ..+.+.|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~------------------------------------------~~~~~~~ 119 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA------------------------------------------DILTKLR 119 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH------------------------------------------HHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh------------------------------------------HHHHHHh
Confidence 55555555555555555555555432 231 2233445
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHH
Q 041822 332 DLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWG 411 (500)
Q Consensus 332 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 411 (500)
++++|...++.+...... +...+..+...+...|++++|.+.++++.+.. +.+..++..+..++...|++++|...++
T Consensus 120 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 555555555555543211 33445555555566666666666666655432 2235555566666666666666666666
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 412 YLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 412 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
.+++.. +.+...|..+..+|.+.|++++|...+++..+
T Consensus 198 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 198 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666543 22355566666666666777777666666654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.9e-14 Score=125.13 Aligned_cols=223 Identities=13% Similarity=0.084 Sum_probs=153.7
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC---CCCC----H
Q 041822 140 KSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR---FAPN----N 212 (500)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~~----~ 212 (500)
..+..+...+...|++++|...|++..+. . .+..+|..+..++...|++++|.+.+++..+. ..++ .
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL-----H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-----h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 34555666677777777777777777665 3 46677777777777777888777777777652 2222 4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041822 213 KTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGA 292 (500)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 292 (500)
.++..+...+...|++++|...+++..+. .|+. ..+.+.|++++|.+.++++.... +.+...+..+...+
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHH
Confidence 67777778888888888888888877765 3442 34556677888888888877653 22345566677777
Q ss_pred HccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 041822 293 GLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVC 372 (500)
Q Consensus 293 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 372 (500)
...|++++|...++++.+.. +.+..++..+...|...|++++|...|++..+.... +...|..+...+.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHH
Confidence 77777777777777776654 235667777777777777777777777777665432 4566666777777777777777
Q ss_pred HHHHHHHh
Q 041822 373 KLYDRMIE 380 (500)
Q Consensus 373 ~~~~~~~~ 380 (500)
+.+++..+
T Consensus 228 ~~~~~a~~ 235 (258)
T 3uq3_A 228 ETLDAART 235 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1.6e-14 Score=124.75 Aligned_cols=199 Identities=13% Similarity=0.031 Sum_probs=116.8
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041822 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRI 254 (500)
Q Consensus 175 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 254 (500)
|++...+..+...+.+.|++++|...|++..+..|.+...+..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34566677777777777777777777777776666677777777777777777777777777776653 22456666666
Q ss_pred HHHHhc-----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHH
Q 041822 255 DGYCKK-----------GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAM 323 (500)
Q Consensus 255 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 323 (500)
.++... |++++|+..|++..+.. +-+...+..+...+...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 66666666666666543 2234555556666666666666666666665554 455566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 041822 324 ISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRM 378 (500)
Q Consensus 324 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 378 (500)
..+|...|++++|...|++..+..+. +...+..+...+.+.|++++|+..|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666666554332 4455555555666666666666665544
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=3.4e-14 Score=136.97 Aligned_cols=382 Identities=9% Similarity=-0.013 Sum_probs=246.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCCh---HHHHHHHHHhHhhCCCCccHHHHHHHHHH
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYF---DQAWELMSHVQRTHPSLLTLKSMSIMLSR 148 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (500)
.+...+.+.|++++|++.|+.+.+. | +...+..+...+...|+. ++|...|+...+. +...+..+...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC---------------------------------CHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHH
Confidence 3566677889999999999999875 2 344555666667777887 8999999988864 22334445443
Q ss_pred Hhcc-----ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHH
Q 041822 149 ISKF-----QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-RFAPNNKTMNILLLGF 222 (500)
Q Consensus 149 ~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~ 222 (500)
+... +++++|...|++..+.+ +...+..|...|...+..+++.+.++.+.. .-..+...+..+...|
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g-------~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y 151 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANG-------EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLY 151 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTT-------CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3333 48899999999988754 445888888888877665444444433332 1112566777888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----
Q 041822 223 KESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG---CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLV---- 295 (500)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---- 295 (500)
...+.++.+......+.+.-...+...+..|...|.+.| +.++|+++|++..+.| .++...+..+...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred HcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 888866544443333322211223448888999999999 9999999999999988 35555556666666554
Q ss_pred CCHHHHHHHHHhchhCCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----C
Q 041822 296 RNIHQARQLFDEMPKRNLKPDIGAYNAMISS-L--IRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSS-----G 367 (500)
Q Consensus 296 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 367 (500)
+++++|.+.|++.. .| +...+..+... | ...++.++|.+.|++..+.| +...+..+...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 78999999999988 43 56677777776 4 46899999999999999876 6677777777776 55 9
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----CCCHH
Q 041822 368 LEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCV----NFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS----RGRWE 439 (500)
Q Consensus 368 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 439 (500)
+++|.+.|++.. . -+......+...|.. ..+.++|...|+...+.|. ......|...|.. ..+.+
T Consensus 303 ~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 303 AKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp HHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHH
T ss_pred HHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHH
Confidence 999999999877 3 345666667666655 3489999999999998773 3345566666654 46899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 041822 440 EAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKNL 486 (500)
Q Consensus 440 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
+|..+|+...+.|........ ..+......++.+++..+.+...+.
T Consensus 376 ~A~~~~~~A~~~g~~~a~~~l-~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 376 NAYVFSQLAKAQDTPEANDLA-TQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999999999988753222211 1122222334555666666655544
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=2.3e-13 Score=121.98 Aligned_cols=236 Identities=11% Similarity=-0.016 Sum_probs=148.3
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS--VVTYNIRID 255 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~ 255 (500)
...+......+...|++++|...|++..+..+.+...+..+..++...|++++|...+++..+.+..++ ...|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344566667777788888888888887765556666777777888888888888888887777431111 334677777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 041822 256 GYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNA 335 (500)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 335 (500)
.+...|++++|++.|++..+.. +.+..++..+...|...|++++|...|++..+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888877654 2345667777777777788888888777777663 3345555555523333457777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHHcCCHhh
Q 041822 336 AMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG---LEGVCKLYDRMIEGK-FVPK------TRTVVMLMKFFCVNFRVDL 405 (500)
Q Consensus 336 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~ll~~~~~~~~~~~ 405 (500)
|.+.|+++.+.... +...+..+...+...|+ +++|...+++..+.. -.|+ ..+|..+...+...|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777776665332 34555555566666565 556666666554321 0122 1344445555555555555
Q ss_pred HHHHHHHHHHC
Q 041822 406 GLNLWGYLIDR 416 (500)
Q Consensus 406 a~~~~~~~~~~ 416 (500)
|.+.++++.+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 55555555553
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.6e-12 Score=116.66 Aligned_cols=223 Identities=12% Similarity=0.043 Sum_probs=108.0
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE----SGDVTAMEMFYHEMVLRGFRPSVVTYNI 252 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 252 (500)
+..++..+...+...|++++|.+.|++..+ +.+...+..+...+.. .+++++|...|++..+.+ +...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 444455555555555555555555555544 2234444555555555 555555555555555443 3444444
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHH
Q 041822 253 RIDGYCK----KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLI 328 (500)
Q Consensus 253 li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 328 (500)
+...|.. .+++++|++.|++..+.+ +.. .+..+...|.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~-----------------------------------a~~~lg~~~~ 121 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAE-----------------------------------GCASLGGIYH 121 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH-----------------------------------HHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---Ccc-----------------------------------HHHHHHHHHH
Confidence 5455554 555555555555544433 334 4444444444
Q ss_pred h----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 041822 329 R----CRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMK----SSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCV- 399 (500)
Q Consensus 329 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~- 399 (500)
. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...+..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHG 195 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 4 444455555444444432 33334444444444 455555555555544432 23344444444444
Q ss_pred ---cCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----CCCHHHHHHHHHHHHHc
Q 041822 400 ---NFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS----RGRWEEAFECSKQMLVR 451 (500)
Q Consensus 400 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 451 (500)
.+++++|...+++..+.+ +...+..+...|.+ .+++++|.+.|++..+.
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 555555555555555543 13344444555555 55555555555555544
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.3e-12 Score=117.15 Aligned_cols=225 Identities=10% Similarity=0.014 Sum_probs=184.0
Q ss_pred ccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCCH
Q 041822 137 LTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT----QKEMKEARSVFVKLLSRFAPNN 212 (500)
Q Consensus 137 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~ 212 (500)
.+..++..+...+...|++++|...|++..+ +.+..++..+...|.. .+++++|...|++..+. .+.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~ 74 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD-------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYS 74 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--CCH
Confidence 3556778888899999999999999998864 3467889999999999 99999999999999873 288
Q ss_pred HhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHH
Q 041822 213 KTMNILLLGFKE----SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK----KGCFGDAMRLFEEMERVACLPSLQT 284 (500)
Q Consensus 213 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~ 284 (500)
..+..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a 148 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG 148 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH
Confidence 999999999999 999999999999999886 78889999999999 999999999999998876 5666
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041822 285 ITTLIHGAGL----VRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIR----CRDLNAAMELMDEMEEKRIGHDNVTYH 356 (500)
Q Consensus 285 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 356 (500)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 222 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 222 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHH
Confidence 7777777776 788888888888887764 45667777777777 788888888888777764 355566
Q ss_pred HHHHHHHH----cCChhHHHHHHHHHHhCC
Q 041822 357 TMFFGLMK----SSGLEGVCKLYDRMIEGK 382 (500)
Q Consensus 357 ~li~~~~~----~g~~~~a~~~~~~~~~~~ 382 (500)
.+...|.+ .+++++|.+.|++..+.+
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66677776 777777777777776653
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=2.1e-13 Score=122.29 Aligned_cols=232 Identities=9% Similarity=0.036 Sum_probs=164.3
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCC-ccHHHHHHHHHHHh
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSL-LTLKSMSIMLSRIS 150 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 150 (500)
..+..+...|++++|+..|+.+.+.. +.+...+..+..++...|++++|.+.++.+.+..++. .....+..+...+.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34566777888888888888888753 4455677888888888888888888888888732221 12345677777888
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTA 230 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (500)
..|++++|+..|++..+. .+.+..+|..+...|...|++++|...|++..+..+.+...+..+...+...+++++
T Consensus 86 ~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDR-----DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH-----STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HcccHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776 456777888888888888888888888888887666677777777734444558888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHccCCHHH
Q 041822 231 MEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC---FGDAMRLFEEMERVA-CLPS------LQTITTLIHGAGLVRNIHQ 300 (500)
Q Consensus 231 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~~~------~~~~~~ll~~~~~~~~~~~ 300 (500)
|...|+++.+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+ ..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 888888887763 2246666677777777777 777777777766431 0122 1345556666666666666
Q ss_pred HHHHHHhchhC
Q 041822 301 ARQLFDEMPKR 311 (500)
Q Consensus 301 a~~~~~~~~~~ 311 (500)
|.+.|++..+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 66666666654
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=1.3e-13 Score=122.15 Aligned_cols=203 Identities=12% Similarity=0.003 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIML 146 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 146 (500)
...+..+...+...|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.++++.+..|. +...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR--NARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHH
Confidence 4556667777777888888888888877642 456677777777888888888888888887776554 345666677
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 226 (500)
..|...|++++|.+.|+++... +..+.+...+..+...+...|++++|.+.|+++.+..+.+...+..+...+...|
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQD---TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTC---TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHHHHHHHHHhC---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 7777777777777777776551 1134455667777777777777777777777777644556677777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 227 DVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 190 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp CHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7777777777766543 2355566666677777777777777777776653
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=6.1e-14 Score=123.36 Aligned_cols=203 Identities=9% Similarity=0.049 Sum_probs=150.0
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.....+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+..|. +...+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 96 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSS--AATAYYG 96 (243)
T ss_dssp ---------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--chHHHHH
Confidence 345556667777888899999999999998753 567888888899999999999999999999887654 4567777
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~ 224 (500)
+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++.+..+.+...+..+...+.+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRA-----GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 888888899999999999988776 466778888888888999999999999988887556678888888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 225 SGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 225 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
.|++++|...++++.+.. +.+..++..+..+|...|++++|.+.++++.+..
T Consensus 172 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 888888888888887763 3357778888888888888888888888887754
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=2.9e-13 Score=119.79 Aligned_cols=196 Identities=11% Similarity=0.026 Sum_probs=77.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 261 (500)
..+...+...|++++|.+.|+++.+..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHh
Confidence 3333333334444444444443333222333334444444444444444444444333331 112333333444444444
Q ss_pred ChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041822 262 CFGDAMRLFEEMERVACLP-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELM 340 (500)
Q Consensus 262 ~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 340 (500)
++++|.++++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|...+
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444444444443311112 22333333344444444444444444443332 112334444444444444444444444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 041822 341 DEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIE 380 (500)
Q Consensus 341 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 380 (500)
+++.+... .+...+..+...+...|++++|.+.++++.+
T Consensus 199 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 199 DLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44443322 1333344444444444444444444444443
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=3.9e-14 Score=127.20 Aligned_cols=249 Identities=10% Similarity=-0.019 Sum_probs=194.6
Q ss_pred hhcCChHHHHHHHHHhhcCCCCC--CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccH
Q 041822 78 AAHSNGLKALEFFKFTLQHPHFT--PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSY 155 (500)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (500)
...+++++|++.|+.+.+..... .+...+..+...+...|++++|...|+++.+..|. +...+..+...|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHccCH
Confidence 34688999999999999862211 24567889999999999999999999999998765 456788899999999999
Q ss_pred HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 041822 156 EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFY 235 (500)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 235 (500)
++|...|++.... .+.+..++..+...+.+.|++++|...|+++.+..+ +.......+..+...|++++|...+
T Consensus 94 ~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 94 DAAYEAFDSVLEL-----DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHHHHH-----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999887 466789999999999999999999999999987433 3334445555667789999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHhchhCC
Q 041822 236 HEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACL---PSLQTITTLIHGAGLVRNIHQARQLFDEMPKRN 312 (500)
Q Consensus 236 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 312 (500)
....... +++...+ .++..+...++.++|++.+++..+.... .+...+..+...|...|++++|...|+++.+..
T Consensus 168 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 168 KQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 8877763 3344444 4777788889999999999988764311 115778889999999999999999999998864
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041822 313 LKPDIGAYNAMISSLIRCRDLNAAMELM 340 (500)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~a~~~~ 340 (500)
|+. +.....++...|++++|.+.+
T Consensus 246 --p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 --VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CTT--CHHHHHHHHHHHHHHHC----
T ss_pred --chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 322 333355677778888887765
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=2e-13 Score=127.65 Aligned_cols=216 Identities=9% Similarity=0.052 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCC-hHHHHHHHHHhHhhCCCCccHHHHHHHH
Q 041822 68 LVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRY-FDQAWELMSHVQRTHPSLLTLKSMSIML 146 (500)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 146 (500)
.++..+..++...|++++|++.|+.+++.. |-+...|..+..++...|+ +++|+..|+++.+..|. +..+|..+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~--~~~a~~~~g 173 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC--CHHHHHHHH
Confidence 344555555555666666666666666542 3445555666666666664 66666666666665444 334555555
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh-c
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE-S 225 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~-~ 225 (500)
.++...|++++|+..|+++... .+.+..+|..+..++.+.|++++|+..|+++++..+.+...|+.+..++.+ .
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~l-----dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQ-----DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh-----CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 5555666666666666665554 345555666666666666666666666666655444455556666555555 3
Q ss_pred CCHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 041822 226 GDVTAM-----EMFYHEMVLRGFRPSVVTYNIRIDGYCKKG--CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLV 295 (500)
Q Consensus 226 ~~~~~a-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 295 (500)
|..++| ...+++.++.. +-+...|+.+...+...| ++++|++.+.++ +. .+.+...+..+...|.+.
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 333444 24444444432 113445555555555544 355555555554 21 123344444555555443
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=3.2e-13 Score=126.22 Aligned_cols=233 Identities=11% Similarity=0.041 Sum_probs=179.1
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQS-YEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
...|..+..++...|++++|++.++++.+..|. ...+|..+..++...|+ +++|+..|++.... .+.+..+|
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-----~P~~~~a~ 169 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-----QPKNYQVW 169 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----CCCCHHHH
Confidence 456777888888889999999999999988766 45577778888888886 99999999988877 46788889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-c
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK-K 260 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~ 260 (500)
+.+..++...|++++|+..|+++++..+-+...|..+..++.+.|++++|...++++++... -+...|+.+..++.+ .
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998876677888888888888889999999999988887742 367788888888888 5
Q ss_pred CChhHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcC--
Q 041822 261 GCFGDA-----MRLFEEMERVACLPSLQTITTLIHGAGLVR--NIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCR-- 331 (500)
Q Consensus 261 g~~~~a-----~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 331 (500)
|..++| ++.|++..... +-+...|..+...+...| ++++|.+.+.++ +.. +.+...+..+...|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcc
Confidence 665777 47777777654 335667777777777766 577777777776 332 335666777777777653
Q ss_pred -------CHHHHHHHHHHH-HHC
Q 041822 332 -------DLNAAMELMDEM-EEK 346 (500)
Q Consensus 332 -------~~~~a~~~~~~~-~~~ 346 (500)
..++|.++|+++ .+.
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHHHHHHHHHh
Confidence 247777777776 443
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=7e-13 Score=114.92 Aligned_cols=199 Identities=7% Similarity=-0.053 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
..|..+...+...|++++|.+.|+++.+..+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3344444444444444444444444443333334444444444444444444444444444332 113344444444444
Q ss_pred hc-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 041822 259 KK-GCFGDAMRLFEEMERVACLPS-LQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAA 336 (500)
Q Consensus 259 ~~-g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 336 (500)
.. |++++|.+.++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 44 455555555444444211121 3344444444455555555555555444432 12344455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 337 MELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
...++++.+.....+...+..+...+...|+.+++..+++.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555555443321234444444455555555555555555554
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=4e-13 Score=116.48 Aligned_cols=198 Identities=12% Similarity=0.043 Sum_probs=91.5
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
.+..+...+...|++++|.+.++.+.+..|. +...+..+...+...|++++|...+++.... .+.+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l 82 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPK--NELAWLVRAEIYQYLKVNDKAQESFRQALSI-----KPDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCChHHHHHH
Confidence 3444444444444444444444444444332 2233444444444444444444444444433 23344444445
Q ss_pred HHHHHcC-CCHHHHHHHHHHhhh--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041822 185 LQAFCTQ-KEMKEARSVFVKLLS--RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261 (500)
Q Consensus 185 l~~~~~~-~~~~~A~~~~~~m~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 261 (500)
...+... |++++|...++++.+ ..+.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 5555555 555555555555444 222223444555555555555555555555544432 113444445555555555
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 262 CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 262 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
++++|.+.+++..+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555555554432102334444444444555555555555555443
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.3e-13 Score=121.19 Aligned_cols=202 Identities=10% Similarity=0.037 Sum_probs=129.1
Q ss_pred CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhh
Q 041822 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEE 180 (500)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 180 (500)
.....+..+...+...|++++|...|+++.+..|. +...+..+...+...|++++|...|+++... .+.+..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~ 93 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE--DAIPYINFANLLSSVNELERALAFYDKALEL-----DSSAATA 93 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCcchHH
Confidence 34556667777777888888888888888776554 3456667777778888888888888877765 3556777
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK 260 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 260 (500)
+..+...+...|++++|.+.++++.+..+.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc
Confidence 77777888888888888888887776555667777777777777777777777777776653 23566677777777777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 261 GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 261 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
|++++|.+.|+++.+.. +.+..++..+...|...|++++|.+.++++.+.
T Consensus 173 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777777777776653 234556666666666677777777776666654
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=5e-13 Score=127.20 Aligned_cols=276 Identities=11% Similarity=0.015 Sum_probs=135.4
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCcc--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc-cccCCChh
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLT--LKSMSIMLSRISKFQSYEETLEAFDRMEREIFV-GIRKFGSE 179 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 179 (500)
...+......+...|++++|...|+++.+..|.... ...+..+...|...|++++|...+++....... +..+....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334445555555556666666666555555433221 233444555555566666666665554332110 00111234
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhC--CCCC----HHhHHHHHHHHHhcCC--------------------HHHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSR--FAPN----NKTMNILLLGFKESGD--------------------VTAMEM 233 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 233 (500)
++..+...+...|++++|...+++..+- ..++ ..++..+...+...|+ ++.|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 5566666666677777777666666531 0011 3356666666666666 666666
Q ss_pred HHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHH
Q 041822 234 FYHEMVLR----GFR-PSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVAC-LPS----LQTITTLIHGAGLVRNIHQARQ 303 (500)
Q Consensus 234 ~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~ 303 (500)
.+++..+. +.. ....++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66554432 111 1123455666666677777777777666553210 011 1244555555555666666655
Q ss_pred HHHhchhCC----CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCChhHHHH
Q 041822 304 LFDEMPKRN----LKP-DIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIG-HD----NVTYHTMFFGLMKSSGLEGVCK 373 (500)
Q Consensus 304 ~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~ 373 (500)
.+++..+.. ..+ ...++..+...|...|++++|...+++..+.... .+ ...+..+...|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 555544321 000 0234445555555555555555555544332000 01 2234444444555555555555
Q ss_pred HHHHH
Q 041822 374 LYDRM 378 (500)
Q Consensus 374 ~~~~~ 378 (500)
.+++.
T Consensus 329 ~~~~a 333 (406)
T 3sf4_A 329 FAEKH 333 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=3.3e-13 Score=128.91 Aligned_cols=272 Identities=11% Similarity=0.021 Sum_probs=130.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCcc--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc-cccCCChhhHHHH
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLT--LKSMSIMLSRISKFQSYEETLEAFDRMEREIFV-GIRKFGSEEFNVL 184 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l 184 (500)
.+...+...|++++|...++++.+..|.... ...+..+...|...|++++|...|++....... +..+....++..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3344444455555555555555544333211 123444444555555555555555554332100 0012233455666
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhC------CCCCHHhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSR------FAPNNKTMNILLLGFKESGD-----------------VTAMEMFYHEMVLR 241 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~------~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~ 241 (500)
...|...|++++|...|++..+. .+....++..+...+...|+ ++.|...+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66666667777776666665531 11223455666666666666 66666665554432
Q ss_pred ----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 242 ----GF-RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACL-PS----LQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 242 ----g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
+- .....++..+...|...|++++|++.+++..+.... .+ ..++..+...|...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11 111235556666666777777777777665542100 01 124455555555666666666555554432
Q ss_pred CCC-----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 312 NLK-----PDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRI-----GHDNVTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 312 ~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
... ....++..+...|...|++++|...+++...... ......+..+...|...|++++|.+.+++..
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 100 0123445555555555555555555554433200 0011233444444555555555555554443
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=1.9e-13 Score=130.08 Aligned_cols=304 Identities=12% Similarity=0.027 Sum_probs=224.4
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC----HHhHHHHHHHHHcCCChHHHHHHHHHhHhhC---C-C
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPT----PDAFEKTLHILARMRYFDQAWELMSHVQRTH---P-S 135 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~-~ 135 (500)
......+......+...|++++|+..|+.+.+.. +.+ ...+..+...+...|++++|...+++..... . .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 3455666677888899999999999999999863 334 3567888899999999999999999876531 1 1
Q ss_pred CccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc-ccCCChhhHHHHHHHHHcCCC--------------------H
Q 041822 136 LLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG-IRKFGSEEFNVLLQAFCTQKE--------------------M 194 (500)
Q Consensus 136 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~--------------------~ 194 (500)
......+..+...|...|++++|...+++........ .......++..+...|...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 1234567778888999999999999999886653210 011124478899999999999 9
Q ss_pred HHHHHHHHHhhh---CC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCh
Q 041822 195 KEARSVFVKLLS---RF---APNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGF-RPS----VVTYNIRIDGYCKKGCF 263 (500)
Q Consensus 195 ~~A~~~~~~m~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~ 263 (500)
++|...+++..+ .. +....++..+...+...|++++|...+++..+... .++ ..++..+...|...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 999999988764 11 12245788899999999999999999998875410 112 33788889999999999
Q ss_pred hHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCC-----CCHhhHHHHHHHHHhcCCH
Q 041822 264 GDAMRLFEEMERVA----CLP-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLK-----PDIGAYNAMISSLIRCRDL 333 (500)
Q Consensus 264 ~~a~~~~~~m~~~~----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~ 333 (500)
++|...+++..+.. ..+ ...++..+...|...|++++|...+++..+.... ....++..+...|...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 99999999876431 111 1457788889999999999999999987653211 1155788899999999999
Q ss_pred HHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCChh
Q 041822 334 NAAMELMDEMEEK----RIGH-DNVTYHTMFFGLMKSSGLE 369 (500)
Q Consensus 334 ~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~ 369 (500)
++|...+++..+. +..+ ...++..+...+...|+..
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 9999999886543 1111 2344555666666666553
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=3.6e-13 Score=128.59 Aligned_cols=134 Identities=14% Similarity=0.055 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhCC----CC-CCH
Q 041822 318 GAYNAMISSLIRCRDLNAAMELMDEMEEKRIG-HD----NVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK----FV-PKT 387 (500)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~-p~~ 387 (500)
.++..+...|...|++++|...+++..+.... .+ ...+..+...|...|++++|.+.+++..+.. .. ...
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45666777777777777777777766543110 01 2256677777888888888888887765421 01 114
Q ss_pred HHHHHHHHHHHHcCCHhhHHHHHHHHHHC----CCC-CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 388 RTVVMLMKFFCVNFRVDLGLNLWGYLIDR----GFC-PHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 388 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
.++..+...+...|++++|...+++.++. +.. ....++..+...|.+.|++++|.+.+++..+.
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56677777888888888888888887753 111 12346777888889999999999999888754
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=3.8e-13 Score=124.28 Aligned_cols=201 Identities=12% Similarity=0.022 Sum_probs=101.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCcc--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc-cccCCChhhHHHH
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLT--LKSMSIMLSRISKFQSYEETLEAFDRMEREIFV-GIRKFGSEEFNVL 184 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l 184 (500)
.....+...|++++|...++++.+..|.... ...+..+...+...|++++|...+++....... +..+....++..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3444455556666666666665555433221 233444555555666666666666554332100 0011123456666
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhC--CCCC----HHhHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSR--FAPN----NKTMNILLLGFKESGD--------------------VTAMEMFYHEM 238 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~--~~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~ 238 (500)
...+...|++++|...+++..+- -.++ ..++..+...+...|+ ++.|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 66777777777777777666531 1111 2356666666666666 66666666554
Q ss_pred HHC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----C-CCCHHHHHHHHHHHHccCCHHHHHHHHHhc
Q 041822 239 VLR----GF-RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA----C-LPSLQTITTLIHGAGLVRNIHQARQLFDEM 308 (500)
Q Consensus 239 ~~~----g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 308 (500)
.+. +. ......+..+...+...|++++|.+.+++..+.. . .....++..+...+...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 332 10 1112345556666666677777766666654321 0 001123444444455555555555555444
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.54 E-value=9.8e-11 Score=116.85 Aligned_cols=416 Identities=7% Similarity=0.006 Sum_probs=284.6
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCC---hHHHHHHHHHhHhhCCCCccHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRY---FDQAWELMSHVQRTHPSLLTLKS 141 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~ 141 (500)
.+...|..+++.+...+....+..+|+.++.. +|.+...|...+..-.+.|. ++.+.++|++.....|..++...
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 35566777888888889999999999999985 68888899999999999998 99999999999987643456667
Q ss_pred HHHHHHHHhcccc--------HHHHHHHHHHHHHHHhccc-cCCChhhHHHHHHHHHc---------CCCHHHHHHHHHH
Q 041822 142 MSIMLSRISKFQS--------YEETLEAFDRMEREIFVGI-RKFGSEEFNVLLQAFCT---------QKEMKEARSVFVK 203 (500)
Q Consensus 142 ~~~l~~~~~~~g~--------~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~---------~~~~~~A~~~~~~ 203 (500)
|...+....+.++ .+...++|+..... .|. .+.+...|...+..... .++++.+..+|+.
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~--vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK--CAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH--TTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--hCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 7776654444433 23445777776543 232 23455688888876543 3456788899999
Q ss_pred hhhCCCCC--HHhHHHHHHHHHh-------------cCCHHHHHHHHHHHHHC--CCC---------------C-----C
Q 041822 204 LLSRFAPN--NKTMNILLLGFKE-------------SGDVTAMEMFYHEMVLR--GFR---------------P-----S 246 (500)
Q Consensus 204 m~~~~~~~--~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~--g~~---------------~-----~ 246 (500)
++. +|.. ..+|......-.. ..+++.|...+.++.+. ++. | +
T Consensus 220 aL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 220 LLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp HTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred HHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 885 3222 2233221111111 11234455555543321 211 1 0
Q ss_pred ---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHhchhCCCCC
Q 041822 247 ---VVTYNIRIDGYCKKG-------CFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQAR-QLFDEMPKRNLKP 315 (500)
Q Consensus 247 ---~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~ 315 (500)
...|...+..--..+ ..+.+..+|++.... ++-....|-..+..+...|+.++|. ++|+..... ++.
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~ 376 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPN 376 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCC
Confidence 234555555433322 123456778888765 3456778888888888889999996 999999875 345
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHHHcCChhHHHHH
Q 041822 316 DIGAYNAMISSLIRCRDLNAAMELMDEMEEKR---------IGHD------------NVTYHTMFFGLMKSSGLEGVCKL 374 (500)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~a~~~ 374 (500)
+...+...+...-+.|++++|.++|+.+.+.. ..|+ ...|...+....+.|+.+.|..+
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66677888888999999999999999887631 0132 23577778888888999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc-CCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 041822 375 YDRMIEGKFVPKTRTVVMLMKFFCVN-FRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRR 453 (500)
Q Consensus 375 ~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 453 (500)
|.+.++.........|......-.+. ++.+.|..+|+..++. ++.+...|...++.....|+.+.|..+|++......
T Consensus 457 f~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 457 FGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 99998751122233443332222333 4589999999999986 344666777888888889999999999999986543
Q ss_pred CC--CHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhc
Q 041822 454 QV--SEASYRMLQRYLVQANANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 454 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (500)
.+ ....|...+..=...|+.+.+..+.+.+.....
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 22 245677778888899999999999999988865
No 62
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=2e-12 Score=124.70 Aligned_cols=346 Identities=9% Similarity=-0.008 Sum_probs=229.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccH---HHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSY---EETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
.+...+.+.|++++|.++|+...+.+ + . ..+..+...|...|+. ++|...|++..+. +...+..+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g-~-~--~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--------~~~A~~~L 75 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG-Y-S--EAQVGLADIQVGTRDPAQIKQAEATYRAAADT--------SPRAQARL 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-C-C--TGGGTCC------------------------------------CHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-C-H--HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--------CHHHHHHH
Confidence 35677788899999999999998764 1 1 2334455556667888 8999999887632 56677888
Q ss_pred HHHHHcCC-----CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041822 185 LQAFCTQK-----EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVT---AMEMFYHEMVLRGFRPSVVTYNIRIDG 256 (500)
Q Consensus 185 l~~~~~~~-----~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~ 256 (500)
...+...+ +.++|+..|++..+.. +...+..|...|...+..+ .+.+.+......| +...+..+...
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~ 150 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLL 150 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHH
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 88666665 7889999999998732 3337778888887766543 4555555555555 45567778888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhc---
Q 041822 257 YCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVR---NIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRC--- 330 (500)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 330 (500)
|...+.++++......+.+.-...+...+..+...|...| +.++|++.|++..+.| .++...+..+...|...
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGS
T ss_pred HHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCC
Confidence 8888866666555443333222223347788888888899 8999999999999987 44666667777777655
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----
Q 041822 331 -RDLNAAMELMDEMEEKRIGHDNVTYHTMFFG-L--MKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNF----- 401 (500)
Q Consensus 331 -g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----- 401 (500)
++.++|.+.|+... .| +...+..+... + ...+++++|.+.|++..+.| +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 79999999999988 43 55666666666 3 46899999999999999876 5666667777776 55
Q ss_pred CHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCch
Q 041822 402 RVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCS----RGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQ----ANAN 473 (500)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~ 473 (500)
++++|.+.|++.. .| +...+..+...|.. ..+.++|..+|++..+.|. ......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCH
Confidence 9999999999887 43 55677777777766 4499999999999988764 2333455555554 3466
Q ss_pred hHHHHHHHHHHHh
Q 041822 474 EKLEDLDRMIKNL 486 (500)
Q Consensus 474 ~~~~~~~~~~~~~ 486 (500)
+.|..+++.....
T Consensus 375 ~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 375 LNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHC
Confidence 7777777665443
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=8.2e-13 Score=122.03 Aligned_cols=275 Identities=13% Similarity=0.071 Sum_probs=189.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC----HHhHHHHHHHHHcCCChHHHHHHHHHhHhh----CCCCccHH
Q 041822 69 VENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPT----PDAFEKTLHILARMRYFDQAWELMSHVQRT----HPSLLTLK 140 (500)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~ 140 (500)
.+......+...|++++|+..|+.+.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.......
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34456777889999999999999999863 334 356788899999999999999999987653 11122345
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhcc-ccCCChhhHHHHHHHHHcCCC--------------------HHHHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVG-IRKFGSEEFNVLLQAFCTQKE--------------------MKEARS 199 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~--------------------~~~A~~ 199 (500)
.+..+...|...|++++|...+++........ .......++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 67778888999999999999999886653211 001113478889999999999 999999
Q ss_pred HHHHhhh-----C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChhHHHH
Q 041822 200 VFVKLLS-----R-FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR----GF-RPSVVTYNIRIDGYCKKGCFGDAMR 268 (500)
Q Consensus 200 ~~~~m~~-----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~a~~ 268 (500)
.+++..+ + .+....++..+...+...|++++|...+++..+. +. .....++..+...+...|++++|.+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9988764 1 1122457888899999999999999999988754 11 1113377888899999999999999
Q ss_pred HHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHhchhCCC-----CCCHhhHHHHHHHHHhcCCHHHHHH
Q 041822 269 LFEEMERVAC-LPS----LQTITTLIHGAGLVRNIHQARQLFDEMPKRNL-----KPDIGAYNAMISSLIRCRDLNAAME 338 (500)
Q Consensus 269 ~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~ 338 (500)
.+++..+... ..+ ..++..+...+...|++++|...+++..+... .....++..+...|.+.|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 9998764210 011 33455566666666666666666665543210 0012244445555555555555555
Q ss_pred HHHHHHH
Q 041822 339 LMDEMEE 345 (500)
Q Consensus 339 ~~~~~~~ 345 (500)
.+++..+
T Consensus 325 ~~~~a~~ 331 (338)
T 3ro2_A 325 FAEKHLE 331 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=8.6e-12 Score=104.44 Aligned_cols=164 Identities=13% Similarity=0.109 Sum_probs=74.6
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHH
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV 183 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (500)
..|..+...+...|++++|++.|++..+..|+ +..++..+...|.+.|++++|...++..... .+.+...+..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~ 78 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN--NVETLLKLGKTYMDIGLPNDAIESLKKFVVL-----DTTSAEAYYI 78 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CchhHHHHHH
Confidence 34444444444444444444444444444333 2233444444444444444444444444333 2333444444
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCF 263 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 263 (500)
+...+...++++.|...+.+..+..+.+...+..+..++.+.|++++|...|++..+.. +.+..+|..+..+|.+.|++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 44444444444444444444444333344444444444444555555555444444432 12344444444455555555
Q ss_pred hHHHHHHHHHHH
Q 041822 264 GDAMRLFEEMER 275 (500)
Q Consensus 264 ~~a~~~~~~m~~ 275 (500)
++|++.|++..+
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555554444
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=6e-12 Score=105.40 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
++.+|..+...+...|++++|++.|+++++.. |-+..++..+..++.+.|++++|...++......|. ....+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--SAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--hHHHHHHH
Confidence 45677788999999999999999999999864 567889999999999999999999999999998665 44567777
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
...+...++++.|...+++.... .+.+..++..+...+.+.|++++|++.|++..+..+.+..+|..+..++.+.
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIAL-----NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence 78889999999999999998877 5778899999999999999999999999999986677899999999999999
Q ss_pred CCHHHHHHHHHHHHHC
Q 041822 226 GDVTAMEMFYHEMVLR 241 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~ 241 (500)
|++++|...|++..+.
T Consensus 155 g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEK 170 (184)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999999886
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=6.2e-12 Score=118.82 Aligned_cols=160 Identities=11% Similarity=-0.023 Sum_probs=86.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhC---CCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLSR---FAP---NNKTMNILLLGFKESGDVTAMEMFYHEMVLRG--F----RPSVVTYN 251 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~~---~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~----~~~~~~~~ 251 (500)
....+...|++++|...|++..+- .+. ...++..+...+...|+++.|...+.+..+.- . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556667778888888888887641 211 23567777777777777777777777665431 0 01134556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHccCCHHHHHHHHHhchhC----CC-CCCHhhHH
Q 041822 252 IRIDGYCKKGCFGDAMRLFEEMERVA----CLP-SLQTITTLIHGAGLVRNIHQARQLFDEMPKR----NL-KPDIGAYN 321 (500)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~~----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 321 (500)
.+...|...|++++|++.|++..+.. ..+ ...++..+...|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 66666777777777777766655321 000 0123444455555555555555555544431 11 11233344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 041822 322 AMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~~ 343 (500)
.+...|.+.|++++|...+++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4444444445554444444443
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=6.1e-11 Score=108.25 Aligned_cols=217 Identities=10% Similarity=0.046 Sum_probs=95.6
Q ss_pred HHHHHHHHHhhhCCCCCHHhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 041822 195 KEARSVFVKLLSRFAPNNKTMNILLLGFKE-------SGDV-------TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK 260 (500)
Q Consensus 195 ~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 260 (500)
++|..+|++..+..+.+...|..++..+.. .|++ ++|..+|++.++.-.+-+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 445555555554344455555555544432 2443 45555555554410111333455555555555
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHH-hcCCHHHHH
Q 041822 261 GCFGDAMRLFEEMERVACLPS-LQ-TITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLI-RCRDLNAAM 337 (500)
Q Consensus 261 g~~~~a~~~~~~m~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~ 337 (500)
|++++|.++|++..+.. |+ .. .|..+...+.+.|++++|..+|++..+.+ +.+...|........ ..|+.++|.
T Consensus 113 ~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555554422 22 11 44444444444555555555555544432 112222222221111 134555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHhhHHHHHHHHH
Q 041822 338 ELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK-FVP--KTRTVVMLMKFFCVNFRVDLGLNLWGYLI 414 (500)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 414 (500)
.+|+...+.... +...|..++..+.+.|++++|..+|++..... +.| ....|..++......|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555544433221 34444444444444555555555555544431 222 13344444444444455555555554444
Q ss_pred H
Q 041822 415 D 415 (500)
Q Consensus 415 ~ 415 (500)
+
T Consensus 269 ~ 269 (308)
T 2ond_A 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=8.2e-11 Score=107.37 Aligned_cols=217 Identities=11% Similarity=0.022 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHH-------cCCCH-------HHHHHHHHHhhhC-CCCCHHhHHHHHH
Q 041822 156 EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFC-------TQKEM-------KEARSVFVKLLSR-FAPNNKTMNILLL 220 (500)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~A~~~~~~m~~~-~~~~~~~~~~l~~ 220 (500)
++|..+|++.... .|.+...|..++..+. +.|++ ++|..+|++..+. .+.+...|..++.
T Consensus 33 ~~a~~~~~~al~~-----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLV-----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 6788899988877 4778889988888876 45886 8999999999985 4556678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCC
Q 041822 221 GFKESGDVTAMEMFYHEMVLRGFRPS-VV-TYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGA-GLVRN 297 (500)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~g~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~ 297 (500)
.+.+.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|.++|++..+.+ +.+...|....... ...|+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCC
T ss_pred HHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999986 443 33 89999999999999999999999998865 23444444333332 23699
Q ss_pred HHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCChhHHHHH
Q 041822 298 IHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKR-IGH--DNVTYHTMFFGLMKSSGLEGVCKL 374 (500)
Q Consensus 298 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~ 374 (500)
+++|.++|+...+.. +-+...|..++..+.+.|++++|..+|++..... ..| ....|..++..+.+.|+.++|..+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998764 3367889999999999999999999999999863 344 467888889999999999999999
Q ss_pred HHHHHhC
Q 041822 375 YDRMIEG 381 (500)
Q Consensus 375 ~~~~~~~ 381 (500)
++++.+.
T Consensus 264 ~~~a~~~ 270 (308)
T 2ond_A 264 EKRRFTA 270 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.47 E-value=1.9e-11 Score=115.52 Aligned_cols=233 Identities=8% Similarity=0.006 Sum_probs=144.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCC------CCCHhhHH
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERV----ACLP-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNL------KPDIGAYN 321 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 321 (500)
....+...|++++|++.|++..+. +-.+ ...++..+...|...|++++|...+.+..+... .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344555667777777777766542 1111 234566666667777777777776666544210 11134567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHHHH
Q 041822 322 AMISSLIRCRDLNAAMELMDEMEEKRIG-HD----NVTYHTMFFGLMKSSGLEGVCKLYDRMIEG----KFVP-KTRTVV 391 (500)
Q Consensus 322 ~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~ 391 (500)
.+...|...|++++|.+.|++..+.... ++ ..++..+...|...|++++|.+.+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777777778888887777766542100 11 135666777778888888888888776651 2213 356677
Q ss_pred HHHHHHHHcCCHhhHHHHHHHHHHC----CCCCCHhHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 041822 392 MLMKFFCVNFRVDLGLNLWGYLIDR----GFCPHGHALDLLVTGLCSRGR---WEEAFECSKQMLVRRRQVS-EASYRML 463 (500)
Q Consensus 392 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~l 463 (500)
.+...+...|++++|...+++..+. +-+.....+..+...|...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 7777788888888888888777652 111122335667777778887 66666666655 33333 3345677
Q ss_pred HHHHHHcCchhHHHHHHHHHHHhhc
Q 041822 464 QRYLVQANANEKLEDLDRMIKNLQA 488 (500)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (500)
...|...|++++|..+++.......
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 7888888888888888777665543
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=1.8e-12 Score=125.69 Aligned_cols=214 Identities=12% Similarity=-0.010 Sum_probs=150.9
Q ss_pred cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCH-HHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 041822 154 SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEM-KEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAME 232 (500)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 232 (500)
.+++++..+++.... .+.+...+..+...+...|++ ++|++.|++..+..+.+...|..+..+|.+.|++++|.
T Consensus 83 ~~~~al~~l~~~~~~-----~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-----AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHTT-----CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhcc-----CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 355566666654433 355677778888888888888 88888888887655566778888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------
Q 041822 233 MFYHEMVLRGFRPSVVTYNIRIDGYCKK---------GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLV-------- 295 (500)
Q Consensus 233 ~~~~~~~~~g~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-------- 295 (500)
..|++..+. .|+...+..+...|... |++++|++.|++..+.. +-+...|..+..+|...
T Consensus 158 ~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 158 TCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 888887766 46667777777777777 78888888888777654 33466677777777776
Q ss_pred CCHHHHHHHHHhchhCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 041822 296 RNIHQARQLFDEMPKRNLK--PDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCK 373 (500)
Q Consensus 296 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 373 (500)
|++++|...|++..+.... -+...|..+..+|...|++++|.+.|++..+.... +...+..+...+...|++++|++
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777765310 36667777777777777777777777777665433 45566666677777777776666
Q ss_pred HHH
Q 041822 374 LYD 376 (500)
Q Consensus 374 ~~~ 376 (500)
.+.
T Consensus 314 ~~~ 316 (474)
T 4abn_A 314 SKG 316 (474)
T ss_dssp HTT
T ss_pred Hhc
Confidence 543
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=6.3e-12 Score=121.95 Aligned_cols=214 Identities=11% Similarity=0.059 Sum_probs=119.9
Q ss_pred hHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHH
Q 041822 119 FDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSY-EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEA 197 (500)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 197 (500)
++++.+.++......+ .....+..+...+...|++ ++|++.|++..+. .+.+..+|..+..+|.+.|++++|
T Consensus 84 ~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-----EPELVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4455555555444332 2344555555556666666 6666666665554 344555666666666666666666
Q ss_pred HHHHHHhhhCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 041822 198 RSVFVKLLSRFAPNNKTMNILLLGFKES---------GDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK-------- 260 (500)
Q Consensus 198 ~~~~~~m~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-------- 260 (500)
.+.|++..+. .|+...+..+...+... |++++|...+++..+.. +-+...|..+..+|...
T Consensus 157 ~~~~~~al~~-~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 157 HTCFSGALTH-CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHHTT-CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHhh-CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 6666666542 24455566666666665 66666666666655542 22455555566666555
Q ss_pred CChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041822 261 GCFGDAMRLFEEMERVACL---PSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 261 g~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 337 (500)
|++++|++.|++..+.. + -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...|++++|.
T Consensus 235 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 235 KISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665543 1 245556666666666666666666666665543 224445556666666666666666
Q ss_pred HHHHHH
Q 041822 338 ELMDEM 343 (500)
Q Consensus 338 ~~~~~~ 343 (500)
+.+..+
T Consensus 313 ~~~~~~ 318 (474)
T 4abn_A 313 ESKGKT 318 (474)
T ss_dssp HHTTTC
T ss_pred HHhccc
Confidence 554433
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=1.1e-12 Score=119.78 Aligned_cols=176 Identities=14% Similarity=0.066 Sum_probs=120.5
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCC------CCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh------
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHP------HFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT------ 132 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 132 (500)
.....+..+...+...|++++|+..|+.+.+.. ..+.....+..+...+...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 445667778888899999999999999888720 11334566788888899999999999999888764
Q ss_pred CCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc---cccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC--
Q 041822 133 HPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFV---GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR-- 207 (500)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-- 207 (500)
.........+..+...|...|++++|...|++....... +..+....++..+...+...|++++|.+.|+++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 222234456677777888888888888888877654210 001234456777777777788888887777777641
Q ss_pred ------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 208 ------FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 208 ------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
.+....++..+..++...|++++|...++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112234566666667777777777777666654
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=1.7e-09 Score=107.93 Aligned_cols=395 Identities=8% Similarity=-0.018 Sum_probs=266.7
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcccc---HHHH
Q 041822 82 NGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQS---YEET 158 (500)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a 158 (500)
.+.+.+..|+..+..+ |-|...|..++..+.+.+.++.+..+|+.+....|. +...|...+..-.+.|. ++.+
T Consensus 47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~--~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL--MANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTC--CCCHHHH
T ss_pred CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhhCCcchHHHH
Confidence 3445566666666653 679999999999999999999999999999998765 55678888888788888 9999
Q ss_pred HHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCH--------HHHHHHHHHhhh--CC-CC-CHHhHHHHHHHHH---
Q 041822 159 LEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEM--------KEARSVFVKLLS--RF-AP-NNKTMNILLLGFK--- 223 (500)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~A~~~~~~m~~--~~-~~-~~~~~~~l~~~~~--- 223 (500)
..+|++...... .++++..|..-+....+.++. +...++|+..+. |. .+ +...|...+....
T Consensus 123 ~~lfeRal~~~~---~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 123 EPVLARCLSKEL---GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp HHHHHHHTCSSS---CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcC---CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 999999876520 137888998888766654443 345578888775 54 34 4567877776543
Q ss_pred ------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------cCChhHHHHHHHHHHH--cCC----
Q 041822 224 ------ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK-------------KGCFGDAMRLFEEMER--VAC---- 278 (500)
Q Consensus 224 ------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------------~g~~~~a~~~~~~m~~--~~~---- 278 (500)
..++++.+..+|+..+......-..+|......--. ..+++.|...+.++.. .++
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 234577899999998864222223344322221111 1223445555554432 111
Q ss_pred C-----------C-----C---HHHHHHHHHHHHccC-------CHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCC
Q 041822 279 L-----------P-----S---LQTITTLIHGAGLVR-------NIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRD 332 (500)
Q Consensus 279 ~-----------~-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 332 (500)
+ | + ...|...+.---..+ ..+.+..+|++..... +-+...|...+..+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCc
Confidence 1 1 0 133444444322222 1234566788877753 4477888888888888999
Q ss_pred HHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC---------CCCC------------HHHH
Q 041822 333 LNAAM-ELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGK---------FVPK------------TRTV 390 (500)
Q Consensus 333 ~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~p~------------~~~~ 390 (500)
.++|. ++|++..... ..+...|-..+....+.|++++|.++|+++.+.. -.|+ ...|
T Consensus 359 ~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 99996 9999988753 2366667778888889999999999999987531 0132 2357
Q ss_pred HHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 041822 391 VMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSR-GRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQ 469 (500)
Q Consensus 391 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 469 (500)
...+....+.|+.+.|..+|..+++.........|...+..-.+. ++.+.|.++|+...+. +.-+...+...+.....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHh
Confidence 777777778899999999999999861122334454333333344 4589999999999876 33355566788888888
Q ss_pred cCchhHHHHHHHHHHHh
Q 041822 470 ANANEKLEDLDRMIKNL 486 (500)
Q Consensus 470 ~~~~~~~~~~~~~~~~~ 486 (500)
.|+.+.|+.+++.....
T Consensus 517 ~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDK 533 (679)
T ss_dssp HTCHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999876554
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=2.1e-12 Score=118.04 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhh--------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLS--------RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR------GF- 243 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g~- 243 (500)
.++..+...+...|++++|..+|+++.+ ..+....++..+...+...|++++|...+++..+. +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444455555555555555555555443 12222344455555555555555555555554432 11
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC-----
Q 041822 244 RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV------AC-LPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR----- 311 (500)
Q Consensus 244 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 311 (500)
.....++..+...|...|++++|.+.+++..+. +. +.....+..+...+...|++++|.++++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 112344555555666666666666666555442 11 112334445555555555555555555555442
Q ss_pred -CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 312 -NLKP-DIGAYNAMISSLIRCRDLNAAMELMDEMEE 345 (500)
Q Consensus 312 -~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 345 (500)
+..| ...++..+...|...|++++|.+.++++.+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 233455556666666666666666665543
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=4.4e-10 Score=105.59 Aligned_cols=268 Identities=10% Similarity=0.025 Sum_probs=149.9
Q ss_pred HHHcCCChHHHHHHHHHhHhhCCCCcc---HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcccc-CCChhhHHHHHHH
Q 041822 112 ILARMRYFDQAWELMSHVQRTHPSLLT---LKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIR-KFGSEEFNVLLQA 187 (500)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~ 187 (500)
.+...|++++|...+++.....|.... ...+..+...+...|++++|...+++.......... .....+++.+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344555666666665555543322211 112334445566667777777777665543211000 0011235667777
Q ss_pred HHcCCCHHHHHHHHHHhhh-----CCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHH
Q 041822 188 FCTQKEMKEARSVFVKLLS-----RFA--P-NNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFR----PSVVTYNIRID 255 (500)
Q Consensus 188 ~~~~~~~~~A~~~~~~m~~-----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~ 255 (500)
+...|++++|...+++..+ +.+ | ...++..+...+...|++++|...+++..+.... ....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 8888888888888887764 111 2 2345666777788888888888888877654211 12345667777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHccCCHHHHHHHHHhchhCCCCCC---HhhHHHHHHH
Q 041822 256 GYCKKGCFGDAMRLFEEMERVACLPS--LQTIT----TLIHGAGLVRNIHQARQLFDEMPKRNLKPD---IGAYNAMISS 326 (500)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 326 (500)
.+...|++++|...+++.....-.++ ..... ..+..+...|++++|...+++..+....+. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 78888888888888887764311111 11111 222346677888888888877765432111 2234555666
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 327 LIRCRDLNAAMELMDEMEEK----RIGHDN-VTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 327 ~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66777777777776655432 111111 133344455555666666666655544
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=1.7e-10 Score=108.59 Aligned_cols=246 Identities=11% Similarity=0.055 Sum_probs=119.2
Q ss_pred CChHHHHHHHHHHH--hhcCChHHHHHHHHHhhcC-CCCCCCHHh--HHHHHHHH--HcCCChHHHH---------HHHH
Q 041822 64 LSSTLVENVLGRLF--AAHSNGLKALEFFKFTLQH-PHFTPTPDA--FEKTLHIL--ARMRYFDQAW---------ELMS 127 (500)
Q Consensus 64 ~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~-~~~~~~~~~--~~~l~~~~--~~~g~~~~a~---------~~~~ 127 (500)
.++..+-+.|...+ ..+++.++|.++++.+.+. .....+... |-.++..- .-.+.+..+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 46777888888777 7889999999999876552 122234333 23333221 0011111111 4444
Q ss_pred HhHhhCC---CCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc-cccCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 041822 128 HVQRTHP---SLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFV-GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVK 203 (500)
Q Consensus 128 ~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 203 (500)
.+..... .......+......+...|++++|+..|++....... +..+....++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4332110 0001111222233345566666666666665433110 00011234556666666666666666666666
Q ss_pred hhh---CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041822 204 LLS---RFAP----NNKTMNILLLGFKESGDVTAMEMFYHEMVLR----GFR-PSVVTYNIRIDGYCKKGCFGDAMRLFE 271 (500)
Q Consensus 204 m~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (500)
..+ .... ...+++.+..+|...|+++.|...+++..+. |-. ....++..+..+|...|++++|++.|+
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 553 1110 1334555566666666666666666555432 100 012344555555555666666666555
Q ss_pred HHHH-----cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 272 EMER-----VACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 272 ~m~~-----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
+..+ .. +....++..+...+.+.|++++|...+++..+
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5544 21 11233444455555555555555555554443
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=1.6e-10 Score=108.91 Aligned_cols=316 Identities=10% Similarity=-0.021 Sum_probs=147.5
Q ss_pred CCCHHhHHHHHHHH--HcCCChHHHHHHHHHhHhhCCCC-ccHHH--HHHHHHH--HhccccHHHHH---------HHHH
Q 041822 100 TPTPDAFEKTLHIL--ARMRYFDQAWELMSHVQRTHPSL-LTLKS--MSIMLSR--ISKFQSYEETL---------EAFD 163 (500)
Q Consensus 100 ~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~-~~~~~--~~~l~~~--~~~~g~~~~a~---------~~~~ 163 (500)
.|+..+-..+-..+ .+.+++++|.++++++.+..... .+... +-.++.. ..-.+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 35555555555555 78899999999999987642221 12221 1222211 00011111111 3333
Q ss_pred HHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC--CCCC----HHhHHHHHHHHHhcCCHHHHHHHHHH
Q 041822 164 RMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR--FAPN----NKTMNILLLGFKESGDVTAMEMFYHE 237 (500)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 237 (500)
.+...............+......+...|++++|...|++..+- ..++ ..++..+...+...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 33211000000000012233344455666677776666666541 1122 33555566666666666666666655
Q ss_pred HHHCC--C---CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 238 MVLRG--F---RP-SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 238 ~~~~g--~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
..+.. . .+ ...+++.+..+|...|++++|++.|++..+.. .+.
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-------------------------------~~~ 215 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA-------------------------------MDI 215 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHT
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-------------------------------HHc
Confidence 54320 0 00 13344555555555666666665555544310 000
Q ss_pred CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--
Q 041822 312 NLK-PDIGAYNAMISSLIRCRDLNAAMELMDEMEE-----KRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKF-- 383 (500)
Q Consensus 312 ~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-- 383 (500)
+.. ....++..+...|...|++++|.+.|++..+ .... ...++..+...|.+.|++++|...+++..+...
T Consensus 216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 100 0123444555555555555555555555444 2221 244455555666666666666666665543210
Q ss_pred -CCC-HHHHHHHHHHHHHcCC---HhhHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 384 -VPK-TRTVVMLMKFFCVNFR---VDLGLNLWGYLIDRGFCPH-GHALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 384 -~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
.+. ...+..+...+...++ +++|...++. .+..++ ...+..+...|...|++++|...|++..+
T Consensus 295 ~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111 2233333334444455 4444444443 222222 23455666677777777777777776654
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=2.5e-10 Score=107.36 Aligned_cols=267 Identities=10% Similarity=-0.012 Sum_probs=150.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHH
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNN-----KTMNILLLGFKESGDVTAMEMFYHEMVLRGF-RPS----VVTYNIR 253 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~l 253 (500)
....+...|++++|...+++..+..+++. .+++.+...+...|+++.|...+++..+... ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33444556666666666666654322221 1345555566666777766666666554210 011 1224455
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCC----CCHhhHHH
Q 041822 254 IDGYCKKGCFGDAMRLFEEMERV----ACL--P-SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLK----PDIGAYNA 322 (500)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 322 (500)
...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++..+.... ....++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 56666677777777777665432 211 2 2334455666667777777777777665543211 12345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHHcCChhHHHHHHHHHHhCCCCC---CHHHHHHH
Q 041822 323 MISSLIRCRDLNAAMELMDEMEEKRIGHD-NVTYH-----TMFFGLMKSSGLEGVCKLYDRMIEGKFVP---KTRTVVML 393 (500)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l 393 (500)
+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 66777777777777777776654311111 11111 12233667788888877777765432111 12345556
Q ss_pred HHHHHHcCCHhhHHHHHHHHHHC----CCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 394 MKFFCVNFRVDLGLNLWGYLIDR----GFCPHG-HALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 394 l~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
...+...|++++|...++...+. |..++. ..+..+..++...|+.++|...+++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777778888888777776542 222222 2555566677778888888888777654
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=1e-10 Score=97.57 Aligned_cols=165 Identities=12% Similarity=0.051 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIML 146 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 146 (500)
...+..+...+...|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+..|. +...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a 83 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD--NVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHH
Confidence 3445556666667777777777777766542 445666666677777777777777777776665443 334555556
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 226 (500)
..+...|++++|.+.++++... .+.+...+..+...+...|++++|.+.++++.+..+.+..++..+...+...|
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEA-----NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence 6666666666666666666554 34455556666666666666666666666665533445555555555555666
Q ss_pred CHHHHHHHHHHHHH
Q 041822 227 DVTAMEMFYHEMVL 240 (500)
Q Consensus 227 ~~~~a~~~~~~~~~ 240 (500)
++++|...++...+
T Consensus 159 ~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 159 RHEEALPHFKKANE 172 (186)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666555555544
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=1.5e-10 Score=96.58 Aligned_cols=163 Identities=12% Similarity=0.025 Sum_probs=100.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
.+..+...+...|++++|.+.++.+.+..|. +...+..+...+...|++++|...++++... .+.+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~ 82 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF--DVDVALHLGIAYVKTGAVDRGTELLERSLAD-----APDNVKVATVL 82 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHH
Confidence 4555666666667777777777666655443 3445555666666667777777766666554 34455666666
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFG 264 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 264 (500)
...+...|++++|.+.++++.+..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence 6666666666666666666665445556666666666666666666666666665543 224555666666666666666
Q ss_pred HHHHHHHHHHH
Q 041822 265 DAMRLFEEMER 275 (500)
Q Consensus 265 ~a~~~~~~m~~ 275 (500)
+|.+.+++..+
T Consensus 162 ~A~~~~~~~~~ 172 (186)
T 3as5_A 162 EALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666544
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=9e-11 Score=118.53 Aligned_cols=167 Identities=14% Similarity=0.084 Sum_probs=148.3
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI 144 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (500)
.....++.|..++...|++++|++.|+++++.. +-+..++..+..++.+.|++++|++.|++..+..|+ ...++..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~--~~~a~~n 82 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT--FADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Confidence 446678889999999999999999999999863 556888999999999999999999999999998776 4568888
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh
Q 041822 145 MLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~ 224 (500)
+..+|...|++++|++.|++..+. .+.+..+|+.+..+|.+.|++++|++.|++..+-.+-+...+..+..++..
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l-----~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQI-----NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence 999999999999999999999877 577889999999999999999999999999998666788999999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q 041822 225 SGDVTAMEMFYHEMVL 240 (500)
Q Consensus 225 ~~~~~~a~~~~~~~~~ 240 (500)
.|++++|.+.+++..+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999998888887765
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=1.1e-10 Score=117.95 Aligned_cols=168 Identities=11% Similarity=0.068 Sum_probs=151.7
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChh
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE 179 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 179 (500)
|-+..+++.+..++.+.|++++|++.|++..+..|+ ...++..+...|.+.|++++|+..|++..+. .+.+..
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~--~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~~ 78 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--FAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTFAD 78 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH
Confidence 345678999999999999999999999999999776 4568889999999999999999999999887 577889
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
+|+.+..+|.+.|++++|++.|++..+-.+-+...|+.+..++.+.|++++|...|++..+.. +-+...+..+..++..
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHh
Confidence 999999999999999999999999998667789999999999999999999999999999874 2367889999999999
Q ss_pred cCChhHHHHHHHHHHH
Q 041822 260 KGCFGDAMRLFEEMER 275 (500)
Q Consensus 260 ~g~~~~a~~~~~~m~~ 275 (500)
.|++++|.+.+++..+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999999988754
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=2e-10 Score=103.00 Aligned_cols=231 Identities=13% Similarity=0.047 Sum_probs=157.7
Q ss_pred cCChHHHHHHHHHhhcC------CCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh------CCCCccHHHHHHHHH
Q 041822 80 HSNGLKALEFFKFTLQH------PHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT------HPSLLTLKSMSIMLS 147 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~ 147 (500)
.|++++|+..|+.+++. ...+....++..+...+...|++++|...++++.+. ........++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45555555555555441 011334567889999999999999999999998875 222344567888899
Q ss_pred HHhccccHHHHHHHHHHHHHHHhc---cccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC--------CCCCHHhHH
Q 041822 148 RISKFQSYEETLEAFDRMEREIFV---GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR--------FAPNNKTMN 216 (500)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--------~~~~~~~~~ 216 (500)
.|...|++++|...|++....... +..+....++..+...+...|++++|...|++..+. .+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999988765210 001334678899999999999999999999998752 223456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCChhHHHH------HHHHHHHcCCCCCH
Q 041822 217 ILLLGFKESGDVTAMEMFYHEMVLR-------GFRPS-VVTYNIRIDGYCKKGCFGDAMR------LFEEMERVACLPSL 282 (500)
Q Consensus 217 ~l~~~~~~~~~~~~a~~~~~~~~~~-------g~~~~-~~~~~~li~~~~~~g~~~~a~~------~~~~m~~~~~~~~~ 282 (500)
.+..++...|++++|...+++..+. ...+. ...|..+...+...+....+.. .++.... ..+...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHH
Confidence 9999999999999999999988764 11222 2233333333333333332222 2221111 112235
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 283 QTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 283 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
.++..+...|...|++++|..++++..+.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57888899999999999999999987664
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=2.2e-09 Score=93.15 Aligned_cols=193 Identities=9% Similarity=0.001 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCC-CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHH
Q 041822 68 LVENVLGRLFAAHSNGLKALEFFKFTLQHPHFT-PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIML 146 (500)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 146 (500)
..+......+...|++++|++.|+.+.+.. + ++...+..+..++...|++++|++.+++..+..|. ....+..+.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~ 83 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN--LANAYIGKS 83 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc--hHHHHHHHH
Confidence 445556666777777777777777777652 3 56666666777777777777777777777776554 445666677
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCCh-------hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--CHHhHHH
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGS-------EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAP--NNKTMNI 217 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--~~~~~~~ 217 (500)
..|...|++++|+..|++..+. .|.+. .+|..+...+...|++++|++.|++..+..+. +...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA-----VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 7777777777777777777665 34444 44666667777777777777777777664344 4556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 218 LLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
+..++...| ...++.+...+ ..+...|..... ...+.+++|+..|++..+..
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 666664433 23334443332 112333333222 22345666666666666543
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=1.4e-09 Score=94.28 Aligned_cols=155 Identities=11% Similarity=0.036 Sum_probs=95.0
Q ss_pred CCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhh
Q 041822 101 PTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEE 180 (500)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 180 (500)
.++..+......+...|++++|.+.|+...+..|. .+...+..+..++...|++++|+..|++..+. .|.+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~ 78 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-----NYNLANA 78 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCSHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-----CcchHHH
Confidence 34566666666666677777777777766665541 12234444666666667777777777666654 3445666
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNN-------KTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS---VVTY 250 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~ 250 (500)
|..+..++...|++++|...|++..+..+.+. ..|..+...+...|++++|...|++..+. .|+ ...|
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 156 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHH
Confidence 66677777777777777777777665444444 44666666666677777777776666654 333 3455
Q ss_pred HHHHHHHHhcCCh
Q 041822 251 NIRIDGYCKKGCF 263 (500)
Q Consensus 251 ~~li~~~~~~g~~ 263 (500)
..+..+|...|+.
T Consensus 157 ~~l~~~~~~~~~~ 169 (228)
T 4i17_A 157 YSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=1.6e-10 Score=103.74 Aligned_cols=232 Identities=11% Similarity=-0.011 Sum_probs=104.0
Q ss_pred cCCCHHHHHHHHHHhhh--------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHH
Q 041822 190 TQKEMKEARSVFVKLLS--------RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR------GF-RPSVVTYNIRI 254 (500)
Q Consensus 190 ~~~~~~~A~~~~~~m~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li 254 (500)
..|++++|+..|++..+ ..+....++..+...+...|++++|...+++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555555443 11123344555555555555555555555555433 11 11233444455
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHH
Q 041822 255 DGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLN 334 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 334 (500)
..|...|++++|.+.|++..+.. ++......+....++..+...|...|+++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 144 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAE 144 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHH----------------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 55555555555555555544320 00000000112334555555555555555
Q ss_pred HHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHH
Q 041822 335 AAMELMDEMEEK------RIGH-DNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG-------KFVPK-TRTVVMLMKFFCV 399 (500)
Q Consensus 335 ~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~p~-~~~~~~ll~~~~~ 399 (500)
+|...+++..+. +..| ....+..+...|...|++++|.+.+++..+. ...+. ...+..+......
T Consensus 145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (283)
T 3edt_B 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES 224 (283)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc
Confidence 555555554432 1011 2334555556666666666666666655431 11121 1122222222222
Q ss_pred cCCHhhHHHHHHHHHH----CC--CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 400 NFRVDLGLNLWGYLID----RG--FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 400 ~~~~~~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
.+....+.. +..+.. .+ .+....++..+...|...|++++|..++++..+
T Consensus 225 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 225 KDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp TCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222222211 111111 11 111234566777788888888888888877654
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=2.1e-09 Score=95.35 Aligned_cols=186 Identities=10% Similarity=-0.050 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC---HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCcc-HHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPT---PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLT-LKSM 142 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~ 142 (500)
...+-.+...+...|++++|++.|+.+.+.. |.+ ...+..+..++.+.|++++|...|+.+.+..|..+. ..++
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3444456677788999999999999999863 334 677888999999999999999999999998775533 4566
Q ss_pred HHHHHHHhc--------cccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHh
Q 041822 143 SIMLSRISK--------FQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKT 214 (500)
Q Consensus 143 ~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~ 214 (500)
..+..++.. .|++++|+..|+++... .|.+......+... ..+... -...
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~--------------~~~~~~---~~~~ 150 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-----YPNHELVDDATQKI--------------RELRAK---LARK 150 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----CTTCTTHHHHHHHH--------------HHHHHH---HHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----CcCchhHHHHHHHH--------------HHHHHH---HHHH
Confidence 677777877 99999999999998876 34444444222111 000000 0111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHc
Q 041822 215 MNILLLGFKESGDVTAMEMFYHEMVLRGFR--PSVVTYNIRIDGYCKK----------GCFGDAMRLFEEMERV 276 (500)
Q Consensus 215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 276 (500)
+..+...+.+.|++++|...|+.+++.... .....+..+..+|... |++++|+..|+++.+.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 344555556666666666666665554211 0123444555555544 5666666666666554
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=3.5e-09 Score=93.92 Aligned_cols=215 Identities=10% Similarity=0.039 Sum_probs=153.5
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCcc-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCCh
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLT-LKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS 178 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 178 (500)
+.+...+-.....+.+.|++++|...|+.+.+..|.... ..++..+..+|.+.|++++|+..|++....... .+...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI--DPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC--CchhH
Confidence 356677888888899999999999999999998776532 567778888899999999999999999876311 12234
Q ss_pred hhHHHHHHHHHc--------CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041822 179 EEFNVLLQAFCT--------QKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTY 250 (500)
Q Consensus 179 ~~~~~ll~~~~~--------~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 250 (500)
.++..+..++.. .|++++|...|+++.+..+.+......+.... .+... -...+
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~--------------~~~~~----~~~~~ 151 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIR--------------ELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH--------------HHHHH----HHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHH--------------HHHHH----HHHHH
Confidence 567888888888 99999999999999875444444333322111 11110 11225
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcc----------CCHHHHHHHHHhchhCCCCCCH-
Q 041822 251 NIRIDGYCKKGCFGDAMRLFEEMERVACL--PSLQTITTLIHGAGLV----------RNIHQARQLFDEMPKRNLKPDI- 317 (500)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~- 317 (500)
..+...|.+.|++++|+..|+++.+.... .....+..+..+|... |++++|...|+++.+.. |+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCCh
Confidence 66788899999999999999999876411 1245677777788766 88999999999998863 333
Q ss_pred ---hhHHHHHHHHHhcCCHHHH
Q 041822 318 ---GAYNAMISSLIRCRDLNAA 336 (500)
Q Consensus 318 ---~~~~~li~~~~~~g~~~~a 336 (500)
.....+-..+...++++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3445555555555555544
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=5.3e-09 Score=94.45 Aligned_cols=127 Identities=8% Similarity=-0.066 Sum_probs=57.1
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC--CCCC----HHhHHHHHHH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKF-GSEEFNVLLQAFCTQKEMKEARSVFVKLLSR--FAPN----NKTMNILLLG 221 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~----~~~~~~l~~~ 221 (500)
|...|++++|...|++..........++ ...+|+.+..+|.+.|++++|+..|++..+- ...+ ..+++.+..+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455666666666655543311000011 1345566666666666666666666655430 0001 2344444444
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 222 FKES-GDVTAMEMFYHEMVLRGFR-PS----VVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 222 ~~~~-~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
|... |++++|...|++..+.... .+ ..+++.+...+.+.|++++|+..|++..+
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4443 5555555555444432000 00 12344444444455555555555554444
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.10 E-value=4.7e-09 Score=89.54 Aligned_cols=166 Identities=10% Similarity=-0.004 Sum_probs=86.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHH----------------HHHHHhccccHHHHHHHHHHHHHHHhc
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSI----------------MLSRISKFQSYEETLEAFDRMEREIFV 171 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~~ 171 (500)
.....+...|++++|...|+...+..|+. ...+.. +...|.+.|++++|+..|++..+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 83 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDR--TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--- 83 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHH--HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC--hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 33444445555555555555555543321 112222 555566666666666666666655
Q ss_pred cccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHH
Q 041822 172 GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV--TAMEMFYHEMVLRGFRPSVVT 249 (500)
Q Consensus 172 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~ 249 (500)
.|.+..+|..+..++...|++++|...|++..+..|.+..++..+..++...|+. +.+...+..... ..|....
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 3556666666666666666666666666666654455666666666665544332 233333333321 1122222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 041822 250 YNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQT 284 (500)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 284 (500)
+.....++...|++++|+..|++..+.. |+...
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~ 192 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRF--PSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--CCHHH
Confidence 2333344445566666666666665543 55433
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=1.3e-08 Score=87.95 Aligned_cols=200 Identities=12% Similarity=0.055 Sum_probs=118.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCC-CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccH-HHHHHHHHHH
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTP-TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTL-KSMSIMLSRI 149 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 149 (500)
.++..+...|++++|+..|+.+.+.....+ ....+..+..++.+.|++++|+..|+++.+..|..... .++..+..++
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 445666778888888888888876421112 13567777788888888888888888888877765542 1333333333
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHH
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVT 229 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (500)
...|.. .+ ..|..+...+...|++++|...|+++.+..|-+...+........
T Consensus 89 ~~~~~~-----~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~------ 141 (225)
T 2yhc_A 89 MALDDS-----AL----------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF------ 141 (225)
T ss_dssp HHHHC-----------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH------
T ss_pred Hhhhhh-----hh----------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH------
Confidence 332210 00 112233344456778888988888888765555554433221110
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHH
Q 041822 230 AMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS----LQTITTLIHGAGLVRNIHQARQLF 305 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~ 305 (500)
+...+. .....+...|.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|+.++|.+.+
T Consensus 142 ----~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 142 ----LKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp ----HHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 101110 112345667778888888888888887753 33 245777778888888888888888
Q ss_pred HhchhCC
Q 041822 306 DEMPKRN 312 (500)
Q Consensus 306 ~~~~~~~ 312 (500)
+.+...+
T Consensus 208 ~~l~~~~ 214 (225)
T 2yhc_A 208 KIIAANS 214 (225)
T ss_dssp HHHHHCC
T ss_pred HHHHhhC
Confidence 8777764
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=7.3e-09 Score=93.55 Aligned_cols=212 Identities=9% Similarity=-0.019 Sum_probs=150.0
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCC---CC-ccHHHHHHHHHHHhccccHHH
Q 041822 82 NGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHP---SL-LTLKSMSIMLSRISKFQSYEE 157 (500)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~-~~~~~~~~l~~~~~~~g~~~~ 157 (500)
++++|...|+.+ ...+...|++++|.+.|++..+..+ +. ....++..+...|...|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 366777776665 4457788999999999988876421 11 124567788888999999999
Q ss_pred HHHHHHHHHHHHhccccC-CChhhHHHHHHHHHcC-CCHHHHHHHHHHhhhCCCC--C----HHhHHHHHHHHHhcCCHH
Q 041822 158 TLEAFDRMEREIFVGIRK-FGSEEFNVLLQAFCTQ-KEMKEARSVFVKLLSRFAP--N----NKTMNILLLGFKESGDVT 229 (500)
Q Consensus 158 a~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~-~~~~~A~~~~~~m~~~~~~--~----~~~~~~l~~~~~~~~~~~ 229 (500)
|+..|++........... .-..+++.+...|... |++++|+..|++..+-.+. + ..++..+...+.+.|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 999999877653210000 0145788999999996 9999999999998852111 1 457889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--cc
Q 041822 230 AMEMFYHEMVLRGFRPSV------VTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL------QTITTLIHGAG--LV 295 (500)
Q Consensus 230 ~a~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~--~~ 295 (500)
+|...|++..+....... ..|..+..++...|++++|...|++..+.. |+. ..+..++.++. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCH
Confidence 999999999987433221 156777888889999999999999887643 321 12344455554 44
Q ss_pred CCHHHHHHHHHhchhC
Q 041822 296 RNIHQARQLFDEMPKR 311 (500)
Q Consensus 296 ~~~~~a~~~~~~~~~~ 311 (500)
+++++|++.|+.+...
T Consensus 254 ~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRL 269 (292)
T ss_dssp TTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHhccCCcc
Confidence 5677788777776553
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.08 E-value=7.2e-09 Score=81.05 Aligned_cols=126 Identities=17% Similarity=0.205 Sum_probs=61.0
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHH
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFK 223 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~ 223 (500)
.+...+...|++++|...|+++... .+.+...+..+...+...|++++|...|+++.+..+.+...+..+...+.
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc-----CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3444444555555555555555443 23344445555555555555555555555554433334444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
..|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555555544432 12344444444555555555555555554443
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=3.3e-09 Score=107.62 Aligned_cols=185 Identities=11% Similarity=0.054 Sum_probs=141.1
Q ss_pred HcCCChHHHHHHHHHhH--------hhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHH
Q 041822 114 ARMRYFDQAWELMSHVQ--------RTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLL 185 (500)
Q Consensus 114 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll 185 (500)
...|++++|++.+++.. +..|. +...+..+...+...|++++|++.|++..+. .+.+...|..+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg 474 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE--SVELPLMEVRALLDLGDVAKATRKLDDLAER-----VGWRWRLVWYRA 474 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCCCHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc--chhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----CcchHHHHHHHH
Confidence 67788888888888887 55444 4456777777888889999999988888877 366788888888
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 041822 186 QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGD 265 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 265 (500)
.++...|++++|.+.|++..+-.+.+...|..+..++.+.|++++ ...|++..+.. +-+...|..+..++.+.|++++
T Consensus 475 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 475 VAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHH
Confidence 888889999999999988887556678888888888888999888 88888888764 2366788888888889999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC--------HHHHHHHHHhch
Q 041822 266 AMRLFEEMERVACLPS-LQTITTLIHGAGLVRN--------IHQARQLFDEMP 309 (500)
Q Consensus 266 a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~ 309 (500)
|++.|++..+.+ |+ ...+..+..++...++ +++|.+.+..+.
T Consensus 553 A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 553 AVRTLDEVPPTS--RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHHHTSCTTS--TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHHHHhhcccC--cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 999998887754 44 4566666666655443 566666666554
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=1.2e-08 Score=79.79 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLL 185 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll 185 (500)
+..+...+...|++++|..+++++.+..|. +...+..+...+...|++++|...|+++... .+.+...+..+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~ 76 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----CCCchHHHHHHH
Confidence 444555555556666666666655554433 2334445555555566666666666665544 234455566666
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 186 QAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
..+...|++++|.+.++++.+..+.+..++..+...+.+.|++++|...++++.+.
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 66666666666666666666544445566666666666666666666666665543
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=2.9e-08 Score=88.11 Aligned_cols=179 Identities=9% Similarity=0.021 Sum_probs=95.5
Q ss_pred HHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 197 ARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGF-RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 197 A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
|+..|++..+..+++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45555555543344555555666666666777777766666655432 12455566666666677777777777776665
Q ss_pred cCCCC-----CHHHHHHHHHH--HHccC--CHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 276 VACLP-----SLQTITTLIHG--AGLVR--NIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 276 ~~~~~-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
.. | +..+...+..+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+.
T Consensus 165 ~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 AI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred cC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 43 4 24444444444 22222 566666666666554 233223333334566666666666666654432
Q ss_pred C-----C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 347 R-----I----GHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 347 ~-----~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
- . .-+..+...+|......|+ +|.+++.++.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 0 0 1134444333333334454 566666666653
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=3.3e-08 Score=85.40 Aligned_cols=169 Identities=9% Similarity=-0.048 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCH-HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTP-DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIM 145 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 145 (500)
...+..++.++...|++++|+..|+.+.+...-.+.. .++..+..++...|. ..++ .+..+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~-----~~~~-------------~~~~~ 102 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDD-----SALQ-------------GFFGV 102 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhh-----hhhh-------------hhhcc
Confidence 4556677888999999999999999999853111221 244444444443321 0111 12223
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
...+...|++++|...|+++.+. .|.+..++....... .+...+ ......+...+.+.
T Consensus 103 ~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~----------~~~~~~-------~~~~~~~a~~~~~~ 160 (225)
T 2yhc_A 103 DRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLV----------FLKDRL-------AKYEYSVAEYYTER 160 (225)
T ss_dssp -----CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHH----------HHHHHH-------HHHHHHHHHHHHHH
T ss_pred chhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHH----------HHHHHH-------HHHHHHHHHHHHHc
Confidence 34455678999999999998776 344444443222110 011111 01123456677788
Q ss_pred CCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 226 GDVTAMEMFYHEMVLRGFRPS----VVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
|++++|...|+.+++. .|+ ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 161 ~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 161 GAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp TCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 8888888888888776 232 2456777788888888888888888877764
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=2e-07 Score=82.67 Aligned_cols=244 Identities=9% Similarity=0.037 Sum_probs=156.5
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFG 264 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 264 (500)
++-..-.|.+..++.-...+.. ......-..+.+++...|+++.. ..-.|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~--~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~--- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK--VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK--- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC--CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT---
T ss_pred HHHHHHhhHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc---
Confidence 4445567888777763333221 11223444455777777776531 1123444344444333 3322
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 265 DAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNL-KPDIGAYNAMISSLIRCRDLNAAMELMDEM 343 (500)
Q Consensus 265 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 343 (500)
|+..|++....+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677788777655 45556666777888888999999999888766653 235677788888889999999999999888
Q ss_pred HHCCCCC-----CHHHHHHHHHHH--HHcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHH
Q 041822 344 EEKRIGH-----DNVTYHTMFFGL--MKSS--GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLI 414 (500)
Q Consensus 344 ~~~~~~~-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 414 (500)
.+. .| +..+...+..++ ...| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 775 23 245555566563 3334 788899999988654 4553344445557788899999999988766
Q ss_pred HCC---------CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 041822 415 DRG---------FCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVR 451 (500)
Q Consensus 415 ~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 451 (500)
+.. -+-+..++-.+|......|+ +|.++++++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 421 02355666455655556676 788888888864
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=4.1e-07 Score=81.50 Aligned_cols=232 Identities=9% Similarity=0.014 Sum_probs=116.1
Q ss_pred HHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCC--ChHHHHHHHHHhHhhCCCCccHHHHHHHHHHH---
Q 041822 75 RLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMR--YFDQAWELMSHVQRTHPSLLTLKSMSIMLSRI--- 149 (500)
Q Consensus 75 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 149 (500)
....+....++|+++++.++..+ |-+...|+..-.++...| +++++++.++.+....|...+ +|+.--..+
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~--aW~~R~~iL~~~ 116 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ--IWNYRQLIIGQI 116 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH--HHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH--HHHHHHHHHHHH
Confidence 33334444467777777777653 344455677777777777 777777777777777665433 444333323
Q ss_pred -hcc---ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHH--HHHHHHHHhhhCCCCCHHhHHHHHHHHH
Q 041822 150 -SKF---QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMK--EARSVFVKLLSRFAPNNKTMNILLLGFK 223 (500)
Q Consensus 150 -~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~A~~~~~~m~~~~~~~~~~~~~l~~~~~ 223 (500)
... +++++++..++.+.+. .+.+..+|+.-.-.+.+.|.++ ++++.++++.+..+-|...|+.-.....
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~-----~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSS-----DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhccccCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 333 4555555555555554 3445555555555555555554 5555555555443445555544444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHHH
Q 041822 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN-IHQAR 302 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~ 302 (500)
+.+... ....++++++.++++.... +-|...|+-+-..+.+.|+ .+.+.
T Consensus 192 ~l~~~~-----------------------------~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~ 241 (306)
T 3dra_A 192 SKKHLA-----------------------------TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLE 241 (306)
T ss_dssp SSGGGC-----------------------------CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGH
T ss_pred hccccc-----------------------------hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHH
Confidence 333300 0000444555555544433 2344444444444444444 22233
Q ss_pred HHHHhchhCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 303 QLFDEMPKRN--LKPDIGAYNAMISSLIRCRDLNAAMELMDEMEE 345 (500)
Q Consensus 303 ~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 345 (500)
.+..++.+.+ -..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 242 ~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 242 EFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 3444333321 112444555555555555555555555555543
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=5.6e-09 Score=105.91 Aligned_cols=201 Identities=11% Similarity=0.053 Sum_probs=159.7
Q ss_pred hHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHH--------HHHhccccCCChhhHHHHHHHHHcCCCHHHHHHH
Q 041822 129 VQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRME--------REIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSV 200 (500)
Q Consensus 129 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 200 (500)
+....|..+....+ .+ ...|++++|++.+++.. .. .+.+...+..+..++.+.|++++|.+.
T Consensus 386 ~p~~~p~~~~a~~~----~a-~~~~~~~~A~~~~~~al~~~~~~~~~~-----~p~~~~~~~~~a~~~~~~g~~~~A~~~ 455 (681)
T 2pzi_A 386 VPLVDPTDVAASVL----QA-TVLSQPVQTLDSLRAARHGALDADGVD-----FSESVELPLMEVRALLDLGDVAKATRK 455 (681)
T ss_dssp CBCCCTTSTTHHHH----HH-TTTCCHHHHHHHHHHHHTC-------C-----CTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CccCCCCCcchHHh----hc-ccccCHHHHHHHHHHhhhhcccccccc-----cccchhHHHHHHHHHHhcCCHHHHHHH
Confidence 34556655443222 22 68899999999999987 43 466788999999999999999999999
Q ss_pred HHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041822 201 FVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLP 280 (500)
Q Consensus 201 ~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 280 (500)
|++..+..+.+...|..+..++...|++++|...|++..+.. +-+...|..+..+|.+.|++++ ++.|++..+.+ +-
T Consensus 456 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~ 532 (681)
T 2pzi_A 456 LDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DG 532 (681)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TT
T ss_pred HHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-Cc
Confidence 999998667789999999999999999999999999998874 2257788899999999999999 99999998865 34
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCC--------HHHHHHHHHHH
Q 041822 281 SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRD--------LNAAMELMDEM 343 (500)
Q Consensus 281 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------~~~a~~~~~~~ 343 (500)
+...|..+..++.+.|++++|.+.|++..+.+ +-+...+..+..++...++ +++|.+.+..+
T Consensus 533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 533 VISAAFGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 67789999999999999999999999998864 2245677777777766444 55555555444
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=2.1e-09 Score=86.31 Aligned_cols=146 Identities=8% Similarity=0.035 Sum_probs=95.5
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
|..++...|+.++|++.+..+.... +-++..+-.+...|.+.|++++|++.|++..+..|+ +..++..+..+|...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--DPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc
Confidence 3445556677778888777776542 223344556777777788888888888887777655 445667777777777
Q ss_pred ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHH-HHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 041822 153 QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSV-FVKLLSRFAPNNKTMNILLLGFKESGD 227 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~-~~~m~~~~~~~~~~~~~l~~~~~~~~~ 227 (500)
|++++|+..|++..+. .|.+..+|..+...|.+.|+.++|.+. +++..+-.|-+..+|......+...|+
T Consensus 79 ~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVEL-----NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777777777665 355677777777777777777665544 466665445566666666666555553
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=1.9e-07 Score=83.72 Aligned_cols=216 Identities=10% Similarity=0.020 Sum_probs=170.3
Q ss_pred ChHHHHHHHHHHHhhcC--ChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHH----HcC---CChHHHHHHHHHhHhhCCC
Q 041822 65 SSTLVENVLGRLFAAHS--NGLKALEFFKFTLQHPHFTPTPDAFEKTLHIL----ARM---RYFDQAWELMSHVQRTHPS 135 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~~a~~~~~~~~~~~~~ 135 (500)
....+|+.-..++...+ ++++++++++.++... |-+..+|+....++ ... +++++++++++.+.+. +
T Consensus 65 ~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--~ 140 (306)
T 3dra_A 65 SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--D 140 (306)
T ss_dssp TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--C
Confidence 34555666666666777 9999999999999863 55667777666666 555 7899999999999987 9
Q ss_pred CccHHHHHHHHHHHhccccHH--HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCC------HHHHHHHHHHhhhC
Q 041822 136 LLTLKSMSIMLSRISKFQSYE--ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKE------MKEARSVFVKLLSR 207 (500)
Q Consensus 136 ~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~A~~~~~~m~~~ 207 (500)
..+..+|..-.-.+.+.|.++ ++++.++++.+. .+.|..+|+.-...+.+.+. ++++++.++++...
T Consensus 141 pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~ 215 (306)
T 3dra_A 141 PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK 215 (306)
T ss_dssp TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh
Confidence 999999999999999999988 999999999987 57789999988888888877 88999999999887
Q ss_pred CCCCHHhHHHHHHHHHhcCCHH-HHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 041822 208 FAPNNKTMNILLLGFKESGDVT-AMEMFYHEMVLRG--FRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQT 284 (500)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 284 (500)
.+-|...|+.+...+.+.|+.. .+..+..++.+.+ -..+...+..+.++|.+.|+.++|.++++.+.+.--+.....
T Consensus 216 ~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 216 CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHH
Confidence 7889999999999988888754 4555666655432 134677888888899889999999999999876321334444
Q ss_pred HHHHH
Q 041822 285 ITTLI 289 (500)
Q Consensus 285 ~~~ll 289 (500)
|+...
T Consensus 296 W~~~~ 300 (306)
T 3dra_A 296 WDYQI 300 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.00 E-value=2.8e-08 Score=84.69 Aligned_cols=162 Identities=10% Similarity=-0.005 Sum_probs=88.5
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHH----------------HHHHHHcCCCHHHHHHHHHHhh
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV----------------LLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
+......+...|++++|+..|++.... .|.+...|.. +..++.+.|++++|...|++..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL-----NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344445567888899999988888776 2445555655 6666666666666666666666
Q ss_pred hCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHH
Q 041822 206 SRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC--FGDAMRLFEEMERVACLPSLQ 283 (500)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~ 283 (500)
+..|.+...+..+..++...|++++|...|++..+.. +-+...|..+..+|...|+ .+.+...++.... ..|...
T Consensus 82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 5445556666666666666666666666666665542 2244555555555544332 2233333333322 112222
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 284 TITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
.+.....++...|++++|...|++..+.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2222333344455556666666555553
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=1.1e-07 Score=81.10 Aligned_cols=30 Identities=10% Similarity=0.018 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041822 247 VVTYNIRIDGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
...+..+...|...+++++|+++|++..+.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 47 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ 47 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 334444444444444444444444444443
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=2.1e-08 Score=90.24 Aligned_cols=168 Identities=7% Similarity=-0.023 Sum_probs=136.3
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChh
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE 179 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 179 (500)
+.+...+..+...+...|++++|...+++..+..|+. ...+..+...+.+.|++++|...++++.... + +..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-----p-~~~ 185 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN--GEIGLLLAETLIALNRSEDAEAVLXTIPLQD-----Q-DTR 185 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-----C-SHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc--hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-----c-chH
Confidence 4556778888888999999999999999999987764 4577888889999999999999999886552 3 333
Q ss_pred -hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 041822 180 -EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFR-PSVVTYNIRIDGY 257 (500)
Q Consensus 180 -~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~ 257 (500)
........+.+.++.+.|...+++..+..|.+...+..+...+...|++++|...|.++.+.... .+...+..+...+
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 23333344667788888999999998877888999999999999999999999999999887322 1266788999999
Q ss_pred HhcCChhHHHHHHHHHHH
Q 041822 258 CKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~ 275 (500)
...|+.++|...|++...
T Consensus 266 ~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 266 AALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHHH
Confidence 999999999999887654
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.95 E-value=8.2e-09 Score=85.40 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=24.2
Q ss_pred HHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh
Q 041822 76 LFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT 132 (500)
Q Consensus 76 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 132 (500)
.+...|++++|+..|+.+.+.. |.+...+..+..++...|++++|...++.+.+.
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 3344444444444444444321 233344444444444444444444444444443
No 107
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.95 E-value=3.9e-06 Score=81.23 Aligned_cols=360 Identities=11% Similarity=-0.011 Sum_probs=191.5
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCC-hHHHHHHHHHhHhh-CCCCccHHHHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRY-FDQAWELMSHVQRT-HPSLLTLKSMS 143 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~-~~~~~~~~~~~ 143 (500)
...+|...+..+-. ++++.+..+|++++.. .|+...|...+....+.++ .+....+|+..... +.+..+...|.
T Consensus 14 aR~vyer~l~~~P~-~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 14 PSAIMEHARRLYMS-KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 34445444444433 7899999999999985 4799999988888877663 45677888887764 43555677888
Q ss_pred HHHHHHh----ccccHHHHHHHHHHHHHHHhccccCCCh-hhHHHHHHHHHc-------------CCCHHHHHHHHHHhh
Q 041822 144 IMLSRIS----KFQSYEETLEAFDRMEREIFVGIRKFGS-EEFNVLLQAFCT-------------QKEMKEARSVFVKLL 205 (500)
Q Consensus 144 ~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~-------------~~~~~~A~~~~~~m~ 205 (500)
..+..+. ..|+.+.+.++|++.... +..+. ..|......-.. .+.+..|..+++.+.
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-----P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~ 164 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQT-----PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQ 164 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHTS-----CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHhC-----hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8777654 357788899999988652 11111 122222111000 012233444444443
Q ss_pred hCCC-CCHHhHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 206 SRFA-PNNKTMNILLLGFKESG--D-----VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 206 ~~~~-~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
...+ .+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+.+.|+.++|..+|++....
T Consensus 165 ~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~- 242 (493)
T 2uy1_A 165 PLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM- 242 (493)
T ss_dssp HHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 2111 13334544444322211 0 234566777776642 345677777777777788888888888887776
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHH-HHHHHhchhCC-----C---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 041822 278 CLPSLQTITTLIHGAGLVRNIHQA-RQLFDEMPKRN-----L---KPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRI 348 (500)
Q Consensus 278 ~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~-----~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 348 (500)
+.+...|.. |....+.++. ..+.+...... . .....+|...+....+.+..+.|..+|+.. .. .
T Consensus 243 -P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~ 315 (493)
T 2uy1_A 243 -SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E 315 (493)
T ss_dssp -CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S
T ss_pred -CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C
Confidence 333222221 2221111111 11111110000 0 001234555555555566677777777766 21 1
Q ss_pred CCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHH
Q 041822 349 GHDNVTYHTMFFGLMK-SSGLEGVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALD 426 (500)
Q Consensus 349 ~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 426 (500)
..+...|......-.. .++.+.|..+|+...+.- |+ +..+...+......|+.+.|..+|+.+. .....|.
T Consensus 316 ~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~ 388 (493)
T 2uy1_A 316 GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWD 388 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHH
Confidence 1222333221111111 235777777777666531 22 3334445555556677777777777652 2345666
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 427 LLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 427 ~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
..+..-...|+.+.+.++++++..
T Consensus 389 ~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 389 SMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666555556777777776666653
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=1e-07 Score=81.36 Aligned_cols=179 Identities=9% Similarity=-0.025 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcC----CHHHHHHH
Q 041822 264 GDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCR----DLNAAMEL 339 (500)
Q Consensus 264 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~ 339 (500)
.+|+++|++..+.| +...+..+...|...+++++|.+.|++..+.| +...+..|...|.. + +.++|.+.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888875 77788888888889999999999999998876 56778888888887 6 89999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHhhHHHHH
Q 041822 340 MDEMEEKRIGHDNVTYHTMFFGLMK----SSGLEGVCKLYDRMIEGKFV-PKTRTVVMLMKFFCV----NFRVDLGLNLW 410 (500)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~----~~~~~~a~~~~ 410 (500)
|++..+.| +...+..|...|.. .+++++|+++|++..+.+.. .+...+..|...|.. .++.++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998775 66777778878876 78999999999998876521 126677778888877 78899999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhcC-C-----CHHHHHHHHHHHHHcCCC
Q 041822 411 GYLIDRGFCPHGHALDLLVTGLCSR-G-----RWEEAFECSKQMLVRRRQ 454 (500)
Q Consensus 411 ~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~~~ 454 (500)
++..+.+ .+...+..|...|... | +.++|..+|++..+.|..
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 9998862 3444666777777643 3 899999999999888753
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=9.9e-09 Score=82.31 Aligned_cols=144 Identities=10% Similarity=-0.023 Sum_probs=101.0
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
...+...|++++|+..++..... .+.+...+..+...|.+.|++++|++.|++..+-.+-+..+|..+..++.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~-----~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS-----PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS-----HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhccc-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34456678888888887776443 2334556777888888888888888888888875566788888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHccC
Q 041822 226 GDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRL-FEEMERVACLPSLQTITTLIHGAGLVR 296 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~~~ll~~~~~~~ 296 (500)
|++++|...|+...+.. +-+...|..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus 79 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred CchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 88888888888887763 22567778888888888888776654 46666643 234556665555555554
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.93 E-value=2.1e-08 Score=82.93 Aligned_cols=161 Identities=12% Similarity=0.021 Sum_probs=76.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDG-YC 258 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~ 258 (500)
.+..+...+.+.|++++|...|++..+..|.+...+..+..++.+.|++++|...++...+. .|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 34445555555666666666666655433445555666666666666666666655554433 1222222211111 11
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCC-CHhhHHHHHHHHHhcCCHHHHH
Q 041822 259 KKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKP-DIGAYNAMISSLIRCRDLNAAM 337 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~ 337 (500)
..+...+|+..+++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1122223455555554432 1234445555555555555555555555555443221 2334455555555555555555
Q ss_pred HHHHHH
Q 041822 338 ELMDEM 343 (500)
Q Consensus 338 ~~~~~~ 343 (500)
..|++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.92 E-value=2.2e-08 Score=90.03 Aligned_cols=166 Identities=9% Similarity=-0.031 Sum_probs=134.0
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHh-HH
Q 041822 138 TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKT-MN 216 (500)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~ 216 (500)
+...+..+...+...|++++|...|++.... .|.+...+..+...+.+.|++++|...++++....+ +... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~ 189 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL-----SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-DTRYQGL 189 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-SHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-chHHHHH
Confidence 3456677778889999999999999999887 577889999999999999999999999999886433 4433 33
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcc
Q 041822 217 ILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACL-PSLQTITTLIHGAGLV 295 (500)
Q Consensus 217 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~ 295 (500)
.....+.+.++.+.|...+++..+.. +.+...+..+...+...|++++|+..|+++.+..-. .+...+..+...+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 33334667788888898888888764 346888999999999999999999999999986521 1256789999999999
Q ss_pred CCHHHHHHHHHhchh
Q 041822 296 RNIHQARQLFDEMPK 310 (500)
Q Consensus 296 ~~~~~a~~~~~~~~~ 310 (500)
|+.++|...|++...
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999988876543
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=7.3e-08 Score=87.62 Aligned_cols=199 Identities=10% Similarity=0.037 Sum_probs=112.5
Q ss_pred ccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc-CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHH
Q 041822 151 KFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT-QKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVT 229 (500)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (500)
..|++++|.+++++..+.. +.. +.+ .++++.|...|.+. ...|...|+++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-----~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~ 53 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-----KTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLE 53 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-----CCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHHHc-----ccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHH
Confidence 3577788888888776653 111 112 46777777776654 34566677777
Q ss_pred HHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHH
Q 041822 230 AMEMFYHEMVLR----GFRP-SVVTYNIRIDGYCKKGCFGDAMRLFEEMERV----ACLP-SLQTITTLIHGAGLVRNIH 299 (500)
Q Consensus 230 ~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~ 299 (500)
+|...|.+..+. |-.. -..+|+.+...|.+.|++++|+..|++..+. |-.. ...++..+...|.. |+++
T Consensus 54 ~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~ 132 (307)
T 2ifu_A 54 QAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLS 132 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHH
Confidence 777777766543 1000 1346677777788888888888888776542 1100 12345556666666 7777
Q ss_pred HHHHHHHhchhCCCC---C--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCChh
Q 041822 300 QARQLFDEMPKRNLK---P--DIGAYNAMISSLIRCRDLNAAMELMDEMEEK----RIGHD-NVTYHTMFFGLMKSSGLE 369 (500)
Q Consensus 300 ~a~~~~~~~~~~~~~---~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~ 369 (500)
+|+..|++..+.... + ...++..+...|.+.|++++|+..|++.... +..+. ...+..+...+...|+++
T Consensus 133 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 212 (307)
T 2ifu_A 133 KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHH
Confidence 777766665442100 0 1245556666666666666666666655442 11111 113344444555556666
Q ss_pred HHHHHHHHHH
Q 041822 370 GVCKLYDRMI 379 (500)
Q Consensus 370 ~a~~~~~~~~ 379 (500)
+|...|++..
T Consensus 213 ~A~~~~~~al 222 (307)
T 2ifu_A 213 AAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 6666666555
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=4.3e-08 Score=97.58 Aligned_cols=152 Identities=10% Similarity=-0.021 Sum_probs=61.0
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHH
Q 041822 81 SNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLE 160 (500)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (500)
|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+++..+..|. +...+..+...|...|++++|.+
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG--HPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHH
Confidence 34444444444444331 223444444444444444444444444444444332 22334444444444444444444
Q ss_pred HHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHH
Q 041822 161 AFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES---GDVTAMEMFYHE 237 (500)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~ 237 (500)
.|++..+. .+.+...+..+..++.+.|++++|.+.|++..+..+.+...+..+..++... |+.++|...+++
T Consensus 79 ~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 79 LLQQASDA-----APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 44444443 2333444444444444444444444444444443333444444444444444 444444444444
Q ss_pred HHHC
Q 041822 238 MVLR 241 (500)
Q Consensus 238 ~~~~ 241 (500)
..+.
T Consensus 154 al~~ 157 (568)
T 2vsy_A 154 AVAQ 157 (568)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 4433
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=5e-08 Score=88.70 Aligned_cols=230 Identities=9% Similarity=0.001 Sum_probs=138.2
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHH
Q 041822 80 HSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETL 159 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 159 (500)
.|++.+|.++++.+.+.. +.+ .+...+++++|...|+.. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 567788888888777631 111 011146667766666554 22355667777777
Q ss_pred HHHHHHHHHHhc-cccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh---CC-CC--CHHhHHHHHHHHHhcCCHHHHH
Q 041822 160 EAFDRMEREIFV-GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS---RF-AP--NNKTMNILLLGFKESGDVTAME 232 (500)
Q Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~-~~--~~~~~~~l~~~~~~~~~~~~a~ 232 (500)
..|.+....... +....-..+|+.+...|.+.|++++|...|++..+ .. .+ -..+++.+..+|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 777665443211 10111245677777777777888888777777654 11 11 13566777777777 8888888
Q ss_pred HHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHH
Q 041822 233 MFYHEMVLR----GFRP-SVVTYNIRIDGYCKKGCFGDAMRLFEEMERV----ACLPS-LQTITTLIHGAGLVRNIHQAR 302 (500)
Q Consensus 233 ~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~ 302 (500)
..|++..+. |-.. ...+++.+...|.+.|++++|+..|++..+. +..+. ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 887776653 1000 1456777788888888888888888877652 21111 225556666677778888888
Q ss_pred HHHHhchhCCCCC-C---HhhHHHHHHHHHhcCCHHHHHHH
Q 041822 303 QLFDEMPKRNLKP-D---IGAYNAMISSLIRCRDLNAAMEL 339 (500)
Q Consensus 303 ~~~~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~a~~~ 339 (500)
..|++.. ..... + ......++.++ ..|+.+.+.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 8888776 43211 1 22344555555 56777666653
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.86 E-value=1.1e-05 Score=78.21 Aligned_cols=362 Identities=9% Similarity=-0.057 Sum_probs=222.0
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcccc-HHHHHHH
Q 041822 83 GLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQS-YEETLEA 161 (500)
Q Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~ 161 (500)
...|..+|+.+.... |. |+++.+..+|++.....| +...|...+....+.+. .+....+
T Consensus 11 i~~aR~vyer~l~~~---P~--------------~~~e~~~~iferal~~~p---s~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY---MS--------------KDYRSLESLFGRCLKKSY---NLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -CCHHHHHHHHHHHH---HT--------------TCHHHHHHHHHHHSTTCC---CHHHHHHHHHHHHHHC----CTHHH
T ss_pred hHHHHHHHHHHHHHC---CC--------------CCHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHhCchHHHHHHH
Confidence 556666666666531 22 889999999999998654 66677777776655553 4556777
Q ss_pred HHHHHHHHhccccCCChhhHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCCH--HhHHHHHHHHH------------
Q 041822 162 FDRMEREIFVGIRKFGSEEFNVLLQAFCT----QKEMKEARSVFVKLLSRFAPNN--KTMNILLLGFK------------ 223 (500)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~--~~~~~l~~~~~------------ 223 (500)
|+...... |..+.+...|...+..+.. .++.+.+.++|++.+. +|+.. ..|......-.
T Consensus 71 fe~al~~v--g~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 71 YEFTLGQF--ENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHS--TTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHc--CCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 87766542 3245577888888887653 3678899999999987 33221 12221111100
Q ss_pred -hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 041822 224 -ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG--C-----FGDAMRLFEEMERVACLPSLQTITTLIHGAGLV 295 (500)
Q Consensus 224 -~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 295 (500)
..+.+..|..+++++...--..+...|...+..-...+ - .+.+..+|+++.... +.+...|...+.-+.+.
T Consensus 148 ~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 01123334444444443200113446666555432221 1 345678899988753 45677888888888899
Q ss_pred CCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHH
Q 041822 296 RNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKR---------I---GHDNVTYHTMFFGLM 363 (500)
Q Consensus 296 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~---~~~~~~~~~li~~~~ 363 (500)
|+.+.|..++++.... +.+...+. .|....+.++. ++.+.+.- . ......|...+....
T Consensus 227 ~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~ 297 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297 (493)
T ss_dssp TCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence 9999999999999987 33332222 23332222222 22222210 0 001244666666666
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 041822 364 KSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCV-NFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAF 442 (500)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 442 (500)
+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|+...+.. +-+...+...++...+.|+.+.|.
T Consensus 298 r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 788899999999998 321 2344444422222222 347999999999998853 223455667788778899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Q 041822 443 ECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIKN 485 (500)
Q Consensus 443 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 485 (500)
.+|+++. -....|...+..=...|+.+.+..+++....
T Consensus 375 ~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 375 ALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999972 2466777777777788999999885555543
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=5.4e-08 Score=96.83 Aligned_cols=154 Identities=9% Similarity=-0.071 Sum_probs=119.9
Q ss_pred CCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHH
Q 041822 116 MRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMK 195 (500)
Q Consensus 116 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 195 (500)
.|++++|.+.+++..+..|. +...+..+...+...|++++|.+.|++..+. .+.+..+|..+..+|...|+++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLAL-----HPGHPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp -------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----STTCHHHHHHHHHHHHHTTCHH
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHH
Confidence 47889999999999887665 4567888888999999999999999998876 4667889999999999999999
Q ss_pred HHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHH
Q 041822 196 EARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK---GCFGDAMRLFEE 272 (500)
Q Consensus 196 ~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~ 272 (500)
+|.+.|++..+..+.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..++... |++++|.+.+++
T Consensus 75 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 75 EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 99999999998667788999999999999999999999999998874 23677888899999999 999999999999
Q ss_pred HHHcC
Q 041822 273 MERVA 277 (500)
Q Consensus 273 m~~~~ 277 (500)
..+.+
T Consensus 154 al~~~ 158 (568)
T 2vsy_A 154 AVAQG 158 (568)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 98765
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.76 E-value=1.3e-05 Score=72.69 Aligned_cols=145 Identities=9% Similarity=0.051 Sum_probs=64.9
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCC-ChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHh
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMR-YFDQAWELMSHVQRTHPSLLTLKSMSIMLSRIS 150 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (500)
.+.....+....++|+++++.++..+ |-+..+|+..-.++...| ++++++++++.+....|. +..+|+.-...+.
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK--ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK--SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHH
Confidence 33333344444455666666666542 333444555555555555 356666666665555443 3334443333333
Q ss_pred cc-c-cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHH--------HHHHHHHHhhhCCCCCHHhHHHHHH
Q 041822 151 KF-Q-SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMK--------EARSVFVKLLSRFAPNNKTMNILLL 220 (500)
Q Consensus 151 ~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~A~~~~~~m~~~~~~~~~~~~~l~~ 220 (500)
+. + +++++++.++++.+. .+.+..+|+.-.-.+.+.|.++ ++++.++++.+..+-|...|+....
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~-----dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~ 209 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLP-----DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWY 209 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSS-----CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 33 3 444555555444433 2334444444333333333332 4444444444333334444444444
Q ss_pred HHHhc
Q 041822 221 GFKES 225 (500)
Q Consensus 221 ~~~~~ 225 (500)
.+.+.
T Consensus 210 lL~~l 214 (349)
T 3q7a_A 210 LRVSR 214 (349)
T ss_dssp HHTTS
T ss_pred HHHhc
Confidence 43333
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=8e-06 Score=73.46 Aligned_cols=162 Identities=9% Similarity=-0.031 Sum_probs=92.8
Q ss_pred HHHHHccCCHHHHHHHHHhchhCCC-CCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 041822 289 IHGAGLVRNIHQARQLFDEMPKRNL-KPDI----GAYNAMISSLIRCRDLNAAMELMDEMEEKRIG-HD----NVTYHTM 358 (500)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 358 (500)
+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|...|++..+.... ++ ...++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4445556666666666665554321 1111 12233445555556667777776666653211 12 2246666
Q ss_pred HHHHHHcCChhHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHC----CCCCC-HhHHHH
Q 041822 359 FFGLMKSSGLEGVCKLYDRMIE----G-KFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDR----GFCPH-GHALDL 427 (500)
Q Consensus 359 i~~~~~~g~~~~a~~~~~~~~~----~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 427 (500)
...|...|++++|...|+++.+ . +..+. ..++..+...|.+.|++++|...+++.++. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6677777777777777776652 1 11111 335666777777777777777777766642 21122 456777
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHH
Q 041822 428 LVTGLCSRGR-WEEAFECSKQMLV 450 (500)
Q Consensus 428 li~~~~~~g~-~~~A~~~~~~m~~ 450 (500)
+..+|.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7777777774 5778777777653
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.69 E-value=5.3e-06 Score=75.12 Aligned_cols=221 Identities=12% Similarity=0.050 Sum_probs=169.6
Q ss_pred CChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcC-C-C
Q 041822 117 RYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQ-SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQ-K-E 193 (500)
Q Consensus 117 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~ 193 (500)
+..++|+++++.+....|.. ..+|+.--..+...| .++++++.++.+... .|.+..+|+.-...+.+. + +
T Consensus 68 e~se~AL~lt~~~L~~nP~~--ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-----nPKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAH--YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-----NLKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----TCCCHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHhcCCC
Confidence 33468999999999987764 456666555666677 599999999999877 577888999888888776 6 8
Q ss_pred HHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---
Q 041822 194 MKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVT--------AMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC--- 262 (500)
Q Consensus 194 ~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--- 262 (500)
+++++++++.+.+..+-|..+|+.-.....+.|.++ ++.+.++++.+.... |...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 899999999999988889999988777777766666 899999999987543 78888888888777776
Q ss_pred ----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH--------------------HHHHHHHHhchhCC-----C
Q 041822 263 ----FGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNI--------------------HQARQLFDEMPKRN-----L 313 (500)
Q Consensus 263 ----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~ 313 (500)
++++++.+++..... +-|...|+-+-..+.+.|+. ........++...+ -
T Consensus 220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 689999999988765 45777787766666665543 44555555555442 1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 314 KPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
.++......+++.|...|+.++|.++++.+.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 357888999999999999999999999998754
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.67 E-value=8.8e-07 Score=68.34 Aligned_cols=93 Identities=11% Similarity=0.100 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHH
Q 041822 107 EKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQ 186 (500)
Q Consensus 107 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 186 (500)
......+.+.|++++|++.|++..+..|. +...+..+..+|.+.|++++|+..|++..+. .+.+..+|..+..
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~ 89 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPE--NAILYSNRAACLTKLMEFQRALDDCDTCIRL-----DSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----hhhhhHHHHHHHH
Confidence 33344444444444444444444444332 2233334444444444444444444444433 2333444444444
Q ss_pred HHHcCCCHHHHHHHHHHhhh
Q 041822 187 AFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~~m~~ 206 (500)
++...|++++|.+.|++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 44444444444444444443
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.67 E-value=2.7e-07 Score=73.62 Aligned_cols=94 Identities=6% Similarity=-0.090 Sum_probs=43.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
.+..+...+.+.|++++|...|+.+.+..|. +...|..+..+|...|++++|+..|++.... .|.+...|..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-----~P~~~~~~~~l 110 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--NVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SSSCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----CCCCcHHHHHH
Confidence 3444444444445555555555444444333 2233444444444444444444444444443 23344444444
Q ss_pred HHHHHcCCCHHHHHHHHHHhh
Q 041822 185 LQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~ 205 (500)
..+|.+.|++++|...|++..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=3e-06 Score=72.15 Aligned_cols=123 Identities=7% Similarity=-0.052 Sum_probs=62.4
Q ss_pred HHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 041822 289 IHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGL 368 (500)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 368 (500)
...+...|++++|...|++.. .|+...+..+...|...|++++|...|++..+.... +...|..+...|...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcccH
Confidence 334445555555555555442 234445555555555555555555555555443322 344455555555555555
Q ss_pred hHHHHHHHHHHhCC--------------CCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHC
Q 041822 369 EGVCKLYDRMIEGK--------------FVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDR 416 (500)
Q Consensus 369 ~~a~~~~~~~~~~~--------------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 416 (500)
++|.+.|++..+.. ..|+ ...+..+..++...|++++|.+.++...+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 55555555554421 1111 244555555566666666666666666554
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=1.1e-06 Score=71.30 Aligned_cols=90 Identities=11% Similarity=-0.033 Sum_probs=40.0
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 226 (500)
..+...|++++|...|++.... .+.+..++..+...+...|++++|...+++..+..+.+...+..+..++...|
T Consensus 21 ~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 21 NDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 3334444444444444444333 23334444444444444444444444444444333334444444444444444
Q ss_pred CHHHHHHHHHHHHHC
Q 041822 227 DVTAMEMFYHEMVLR 241 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~ 241 (500)
++++|...+++..+.
T Consensus 96 ~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 96 KFRAALRDYETVVKV 110 (166)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 554444444444443
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.66 E-value=1.1e-06 Score=71.34 Aligned_cols=130 Identities=12% Similarity=0.037 Sum_probs=98.2
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
...+..+...+...|++++|...|++..+..+.+..++..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34567777888888889999988888887556678888888888888888988888888887763 33577788888888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHhch
Q 041822 258 CKKGCFGDAMRLFEEMERVACLPSLQTIT--TLIHGAGLVRNIHQARQLFDEMP 309 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~ 309 (500)
...|++++|.+.|++..+.. +.+...+. .....+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88899999998888887754 22344443 33334667788888888877654
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=2.1e-06 Score=77.38 Aligned_cols=168 Identities=9% Similarity=0.045 Sum_probs=85.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCC--h
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTL----KSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFG--S 178 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~ 178 (500)
.+...+..+...|++++|.+.++...+..+..... ..+..+...+...|++++|+..+++........ ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-IDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-SCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-CchHHHH
Confidence 34455666777788888888777766654332111 112223334455566666666666554321000 0001 2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhh---CCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-C
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLS---RFAPN----NKTMNILLLGFKESGDVTAMEMFYHEMVLRG----FRP-S 246 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g----~~~-~ 246 (500)
.+|+.+...|...|++++|...|++..+ ..+.+ ..+++.+...|.+.|++++|...+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3556666666666666666666666552 11111 1355555666666666666666655544321 000 1
Q ss_pred HHHHHHHHHHHHhcCChhHH-HHHHHHH
Q 041822 247 VVTYNIRIDGYCKKGCFGDA-MRLFEEM 273 (500)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a-~~~~~~m 273 (500)
..+|..+..+|.+.|++++| ...+++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34455555555566666665 4444443
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=9.5e-07 Score=79.61 Aligned_cols=165 Identities=7% Similarity=0.033 Sum_probs=103.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHH----HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCC----h
Q 041822 107 EKTLHILARMRYFDQAWELMSHVQRTHPSLLTLK----SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFG----S 178 (500)
Q Consensus 107 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~ 178 (500)
...+..+...|++++|.+.++...+..+...+.. .+..+...+...|++++|+..|++...... ...+ .
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~---~~~~~~~~~ 155 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL---TGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC---CCSCTTHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc---ccccHHHHH
Confidence 3446677888889999988888877544433321 222355566667788888888887766321 1112 2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhh---CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLS---RFAP----NNKTMNILLLGFKESGDVTAMEMFYHEMVLR----GFRPS- 246 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~~~- 246 (500)
.+++.+...|...|++++|...|+++.+ ..+. ...++..+...|.+.|++++|...+++..+. +..+.
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 2577777788888888888888877763 1111 1235667777777777777777777665543 21112
Q ss_pred HHHHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 041822 247 VVTYNIRIDGYCKKGC-FGDAMRLFEEME 274 (500)
Q Consensus 247 ~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 274 (500)
..+|..+..+|.+.|+ +++|.+.|++..
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4566666677777774 477777666654
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.66 E-value=2.3e-07 Score=82.98 Aligned_cols=95 Identities=14% Similarity=0.003 Sum_probs=40.7
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHH
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV 183 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (500)
..+..+...+.+.|++++|...++...+..|. +...+..+..+|.+.|++++|+..+++..+. .+.+...+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~ 77 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSVKAHFF 77 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCHHHHHH
Confidence 33444444444444444444444444444332 2233334444444444444444444444332 2333344444
Q ss_pred HHHHHHcCCCHHHHHHHHHHhh
Q 041822 184 LLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
+..++...|++++|...|++..
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444444444443
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.65 E-value=2.3e-06 Score=72.85 Aligned_cols=88 Identities=10% Similarity=0.018 Sum_probs=41.6
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
+...+...|++++|++.|+.+. .|+...+..+..++...|++++|.+.+++..+..|. ....+..+...|...
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH--LAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHc
Confidence 3444445555555555555441 334445555555555555555555555555444332 223344444444444
Q ss_pred ccHHHHHHHHHHHHH
Q 041822 153 QSYEETLEAFDRMER 167 (500)
Q Consensus 153 g~~~~a~~~~~~~~~ 167 (500)
|++++|...|++...
T Consensus 85 ~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 85 EKYDLAIKDLKEALI 99 (213)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444443
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.64 E-value=7.4e-07 Score=68.77 Aligned_cols=99 Identities=9% Similarity=-0.004 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
...+......|.+.|++++|++.|++..+..+.+..+|..+..++.+.|++++|...+++.++.. +.+...|..+..+|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 44566677777777777777777777776556677777777777777777777777777776653 22566677777777
Q ss_pred HhcCChhHHHHHHHHHHHcC
Q 041822 258 CKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~~ 277 (500)
...|++++|++.|++..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHC
Confidence 77777777777777776654
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.64 E-value=9.2e-07 Score=68.69 Aligned_cols=118 Identities=8% Similarity=0.131 Sum_probs=72.7
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
......+..+...+...|++++|++.|+.+.+.. +.+...+..+..++...|++++|.+.+++..+..|. +...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~ 88 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT--FIKGYT 88 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--CHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--chHHHH
Confidence 4445555666666677777777777777776642 345666666667777777777777777776666543 344555
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT 190 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 190 (500)
.+...+...|++++|...|++.... .+.+...+..+..++..
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDL-----DSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHH
Confidence 5666666666666666666666554 23344455555554443
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=1.7e-06 Score=66.22 Aligned_cols=95 Identities=18% Similarity=0.201 Sum_probs=42.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
.+..+...+...|++++|.+.++++.+..|. +...+..+...+...|++++|...|+++... .+.+..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l 83 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCccHHHHHHH
Confidence 3444444444444444444444444443322 2233334444444444444444444444433 23334444444
Q ss_pred HHHHHcCCCHHHHHHHHHHhhh
Q 041822 185 LQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~ 206 (500)
...+...|++++|...|+++.+
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=2.1e-06 Score=66.64 Aligned_cols=121 Identities=11% Similarity=0.023 Sum_probs=104.3
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChh
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSE 179 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 179 (500)
+.+...+..+...+...|++++|...+++..+..|. +...+..+...+...|++++|...|++..+. .+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~ 85 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--DAKLYSNRAACYTKLLEFQLALKDCEECIQL-----EPTFIK 85 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCchH
Confidence 456778889999999999999999999999987655 4567888888999999999999999999876 466788
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD 227 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~ 227 (500)
.+..+..++.+.|++++|.+.|++..+..+.+...+..+..++.+.|+
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999987555667788888888776653
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.62 E-value=2.7e-07 Score=76.13 Aligned_cols=122 Identities=11% Similarity=0.151 Sum_probs=82.5
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHH-HHhcCCH
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLG-FKESGDV 228 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~-~~~~~~~ 228 (500)
...|++++|...+++.... .+.+...|..+...|...|++++|...|++..+..+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA-----NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc
Confidence 4556777777777776665 355667777777777777788888777777776445566677777777 6677776
Q ss_pred --HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 229 --TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 229 --~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
++|...++...+.. +.+...+..+...|...|++++|...|++..+..
T Consensus 96 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 77777777777653 2245666677777777777777777777777654
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.62 E-value=1.4e-05 Score=71.97 Aligned_cols=164 Identities=11% Similarity=0.029 Sum_probs=85.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNN------KTMNILLLGFKESGDVTAMEMFYHEMVLRGF---RPS--VV 248 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~---~~~--~~ 248 (500)
.+...+..+...|++++|.+.+.+..+..+... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455666667777777777766654222221 1233344455566666666666666654311 111 33
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH---cC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHhchhCC----CCC-CH
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMER---VA-CLP--SLQTITTLIHGAGLVRNIHQARQLFDEMPKRN----LKP-DI 317 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~---~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 317 (500)
+|+.+...|...|++++|+..|++..+ .. ..+ ...++..+...|...|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 566666666667777777766666552 11 001 11345555555666666666666555544321 000 13
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHHHH
Q 041822 318 GAYNAMISSLIRCRDLNAA-MELMDEM 343 (500)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a-~~~~~~~ 343 (500)
.+|..+...|.+.|+.++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4455555556666666665 4444443
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.62 E-value=2e-07 Score=81.62 Aligned_cols=191 Identities=11% Similarity=-0.052 Sum_probs=120.8
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHhHHHH-------HHHHHcCCChHHHHHHHHHhHhhCCCCc--------------
Q 041822 79 AHSNGLKALEFFKFTLQHPHFTPTPDAFEKT-------LHILARMRYFDQAWELMSHVQRTHPSLL-------------- 137 (500)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------- 137 (500)
..+++..|.+.|..+...+ |-....|..+ ...+.+.++..++...+..-.+..|...
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 4788899999999988864 4556677766 4555555555555555555544222111
Q ss_pred -----cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC-
Q 041822 138 -----TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN- 211 (500)
Q Consensus 138 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~- 211 (500)
...........+...|++++|.+.|+.+...+ +-+. ....+...+.+.+++++|+..|+...+...|.
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-----p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-----SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-----CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 12233445566777788888888887765431 2233 55556667778888888888887554321111
Q ss_pred -HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 212 -NKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS--VVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 212 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23667777778888888888888877764432243 3345556667777788888888888877764
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=4e-07 Score=72.59 Aligned_cols=123 Identities=4% Similarity=-0.077 Sum_probs=86.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
....+.+.+...+.+.++.+ ..| .+...+..+...+.+.|++++|+..|++.... .|.+...|..+
T Consensus 11 ~~~~l~~~~~~~~~l~~al~-------l~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~l 76 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINA-------IPD--DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNVDYIMGL 76 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCC-------SCH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHhC-------CCH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence 34555555555555444332 222 23445666666777788888888888887766 46677778888
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
..+|...|++++|+..|++..+-.|.+...|..+..++.+.|++++|...|+...+.
T Consensus 77 g~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 77 AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888887755667777888888888888888888888887776
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.61 E-value=3.4e-07 Score=75.57 Aligned_cols=119 Identities=7% Similarity=0.027 Sum_probs=51.9
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHH-HhccccH--
Q 041822 79 AHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSR-ISKFQSY-- 155 (500)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 155 (500)
..|++++|+..|+.+.+.. +.+...+..+...+...|++++|...+++..+..|. +...+..+... +...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCCcch
Confidence 3445555555555544432 334444555555555555555555555555444332 22233333333 3344444
Q ss_pred HHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 156 EETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
++|...|++.... .+.+...+..+...+...|++++|...|++..+
T Consensus 98 ~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALAL-----DSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444444444443 233344444444444444444444444444443
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=4.6e-07 Score=81.05 Aligned_cols=193 Identities=9% Similarity=-0.028 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIML 146 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 146 (500)
...+..+...+...|++++|+..|+.+++.. +.+...+..+..++.+.|++++|...++...+..|. +...+..+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg 79 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 4556677788889999999999999999863 557888999999999999999999999999988665 456788888
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 226 (500)
.+|...|++++|...|++...... .+...+...+....+ ..++...........+.+......+.... .|
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~ 149 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAK-----EQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AA 149 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH-----HTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-----cchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HH
Confidence 999999999999999999877642 121112112221111 11111111111123444444444443322 46
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CChhHHHHHHHHHHH
Q 041822 227 DVTAMEMFYHEMVLRGFRPSVV-TYNIRIDGYCKK-GCFGDAMRLFEEMER 275 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~-g~~~~a~~~~~~m~~ 275 (500)
+.++|.+.++...+. .|+.. ....+...+.+. +.+++|.++|.+..+
T Consensus 150 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 150 ERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 666666666655544 33332 222233333333 456666666665543
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=2.1e-06 Score=65.62 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
..|..+...+...|++++|.+.|+++.+..+.+..++..+...+.+.|++++|..+++++.+.. +.+...+..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 4455555555555555555555555554334445555555555555666666666555555442 224455555555666
Q ss_pred hcCChhHHHHHHHHHHHc
Q 041822 259 KKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~ 276 (500)
..|++++|.+.|+++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 666666666666655554
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.60 E-value=1.5e-06 Score=67.16 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhh
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
..+..+...+...|++++|...|++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 81 KAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=4.4e-07 Score=76.64 Aligned_cols=95 Identities=14% Similarity=0.074 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhh------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--C
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLS------RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR----GFRP--S 246 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~~--~ 246 (500)
.++..+...+...|++++|...+++..+ ..+....++..+...+...|++++|...+++..+. |-.+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444444444444444444444432 01112233444444444444444444444443322 1000 1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 247 VVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
...+..+...+...|++++|...+++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 223344444444455555555554444
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.57 E-value=2.4e-06 Score=65.88 Aligned_cols=115 Identities=7% Similarity=-0.041 Sum_probs=53.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
.+..+...+...|++++|...|++..+..+.+...+..+..++...|++++|...++...+.. +.+...+..+...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 344444444455555555555555444333344445555555555555555555555544432 1234444445555555
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 041822 260 KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVR 296 (500)
Q Consensus 260 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 296 (500)
.|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 555555555555544432 123334444444444443
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=7.9e-07 Score=77.84 Aligned_cols=126 Identities=10% Similarity=-0.027 Sum_probs=62.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCC--HhhHHHHHHHHHhc
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPD--IGAYNAMISSLIRC 330 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 330 (500)
+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...+.. .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 4444555556666655555554433 332233333344555566666666665443321 111 22455555556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 041822 331 RDLNAAMELMDEMEEKRIGHD--NVTYHTMFFGLMKSSGLEGVCKLYDRMIEG 381 (500)
Q Consensus 331 g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (500)
|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666665553221132 123333445555666666666666666553
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=7.1e-07 Score=71.13 Aligned_cols=98 Identities=7% Similarity=-0.033 Sum_probs=59.5
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 102 TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 102 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
+...+..+...+...|++++|...|+......|. +...+..+..+|...|++++|+..|++.... .|.+...+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~ 92 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-----DIXEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCTHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCchHH
Confidence 3444555566666666666666666666665544 3345555556666666666666666666554 34455666
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
..+..+|...|++++|.+.|+...+
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666666654
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=1e-06 Score=74.27 Aligned_cols=85 Identities=13% Similarity=0.002 Sum_probs=42.2
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChh
Q 041822 190 TQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR----GFR-PSVVTYNIRIDGYCKKGCFG 264 (500)
Q Consensus 190 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~ 264 (500)
..|++++|.++++.+.........++..+...+...|++++|...+++..+. |.. ....++..+...|...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4556666666443333221234455666666666666666666666655441 111 12334455555555666666
Q ss_pred HHHHHHHHHH
Q 041822 265 DAMRLFEEME 274 (500)
Q Consensus 265 ~a~~~~~~m~ 274 (500)
+|.+.+++..
T Consensus 84 ~A~~~~~~al 93 (203)
T 3gw4_A 84 AARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555544
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=8e-07 Score=70.81 Aligned_cols=99 Identities=11% Similarity=-0.040 Sum_probs=69.2
Q ss_pred cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHH
Q 041822 138 TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNI 217 (500)
Q Consensus 138 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 217 (500)
+...+..+...+...|++++|...|++.... .|.+...|..+..++...|++++|...|++..+..+.+...+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3345555666677777777777777777665 45567777777777777777777777777777644556677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 218 LLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
+..++...|++++|...|+...+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777776654
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.51 E-value=2.6e-06 Score=78.24 Aligned_cols=165 Identities=10% Similarity=-0.042 Sum_probs=92.8
Q ss_pred CChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHH
Q 041822 81 SNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLE 160 (500)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (500)
.++++|++.|+...... +-+...+..+...+.+.|++++|...|++..+..|..... ..+.+..
T Consensus 127 ~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------~~~~~~~ 190 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------SNEEAQK 190 (336)
T ss_dssp EEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------CSHHHHH
T ss_pred eecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC--------------ChHHHHH
Confidence 34445555554443321 2245567778888888888888888888888876654320 0000000
Q ss_pred HHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 161 AFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
+ .+....+|..+..+|.+.|++++|+..|++.++-.+.+...|..+..++...|++++|...|++..+
T Consensus 191 ----~--------~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 191 ----A--------QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp ----H--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----H--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 0112335556666666666666666666666654445566666666666666666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 041822 241 RGFRPSVVTYNIRIDGYCKKGCFGDA-MRLFEEME 274 (500)
Q Consensus 241 ~g~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 274 (500)
.. +-+...+..+..++.+.|+.++| .+.|+.|.
T Consensus 259 l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 259 LY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 22455555666666666666665 33444443
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.49 E-value=1.1e-06 Score=69.58 Aligned_cols=95 Identities=8% Similarity=-0.051 Sum_probs=52.8
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHH
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVL 184 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (500)
.+..+...+.+.|++++|...|+.+....|. +...+..+..+|...|++++|+..|++.... .|.+...+..+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l 92 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHY--DARYFLGLGACRQSLGLYEQALQSYSYGALM-----DINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHHHHHH
Confidence 3444555555556666666666665555443 3334555555555566666666666655554 34455555555
Q ss_pred HHHHHcCCCHHHHHHHHHHhhh
Q 041822 185 LQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~ 206 (500)
..++...|++++|.+.|+...+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666666655554
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.46 E-value=1e-05 Score=61.00 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=57.6
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHH
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV 183 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (500)
..+..+...+...|++++|...++......|. +...+..+...+...|++++|...+++.... .+.+...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~ 77 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----CcccHHHHHH
Confidence 34445555555566666666666665555443 2334455555555566666666666555544 2344555555
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHH
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNI 217 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 217 (500)
+..++...|++++|.+.++...+..+.+...+..
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5666666666666666666555433334443333
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=3.8e-06 Score=64.66 Aligned_cols=56 Identities=11% Similarity=0.164 Sum_probs=21.7
Q ss_pred HHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh
Q 041822 75 RLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT 132 (500)
Q Consensus 75 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 132 (500)
..+...|++++|+..|+.+++.. +.+...+..+..++.+.|++++|+..++...+.
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 12 KEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 33333444444444444433321 223333333444444444444444444444333
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.45 E-value=4.3e-07 Score=76.55 Aligned_cols=88 Identities=13% Similarity=-0.133 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
.+|..+..+|.+.|++++|+..++...+..+.+...+..+..++...|++++|...|++..+.. +-+...+..+..++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH
Confidence 3455555555555555555555555554334455555555555555555555555555555442 113444444444444
Q ss_pred hcCChhHHH
Q 041822 259 KKGCFGDAM 267 (500)
Q Consensus 259 ~~g~~~~a~ 267 (500)
..++..++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 444444433
No 152
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.7e-05 Score=75.77 Aligned_cols=202 Identities=9% Similarity=-0.006 Sum_probs=137.1
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCH---------------HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCcc
Q 041822 74 GRLFAAHSNGLKALEFFKFTLQHPHFTPTP---------------DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLT 138 (500)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 138 (500)
++.+...|++++|++.|..+.+...-..+. .++..+...|...|++++|.+.+..+.+..+....
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 345677899999999999998753221111 23678889999999999999999988774333222
Q ss_pred H----HHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc-ccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh---CC--
Q 041822 139 L----KSMSIMLSRISKFQSYEETLEAFDRMEREIFVG-IRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS---RF-- 208 (500)
Q Consensus 139 ~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~-- 208 (500)
. .+...+-..+...|+++.|..+++......... .......++..+...|...|++++|..++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 122233344556788999999888775542111 0112245678888899999999999999988764 11
Q ss_pred -CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 209 -APNNKTMNILLLGFKESGDVTAMEMFYHEMVLR--GFR-P-S--VVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 209 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~-~-~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
+....++..++..|...|++++|..+++..... .+. | . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 122457888888899999999999888876543 111 1 1 23455666677778888888887776643
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.43 E-value=0.00031 Score=63.28 Aligned_cols=99 Identities=10% Similarity=0.053 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCC-HH
Q 041822 119 FDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQ--SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKE-MK 195 (500)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~ 195 (500)
+++++.+++.+....|. +..+|..-.-.+...| .+++++..++++.+. .+.|..+|+.-.-++...|. ++
T Consensus 90 l~~EL~~~~~~L~~~PK--ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~-----dprNy~AW~~R~~vl~~l~~~~~ 162 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK--SYGTWHHRCWLLSRLPEPNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPA 162 (331)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhCcCHH
Confidence 34555555555555443 3334443333333334 255555555555554 34455555555555555554 35
Q ss_pred HHHHHHHHhhhCCCCCHHhHHHHHHHHHh
Q 041822 196 EARSVFVKLLSRFAPNNKTMNILLLGFKE 224 (500)
Q Consensus 196 ~A~~~~~~m~~~~~~~~~~~~~l~~~~~~ 224 (500)
++++.++.+.+..+-|...|+.....+.+
T Consensus 163 eel~~~~~~I~~~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 163 EELAFTDSLITRNFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 55555555555444455555554444433
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.42 E-value=6.9e-06 Score=75.46 Aligned_cols=132 Identities=12% Similarity=0.007 Sum_probs=107.5
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN---------------NKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
+...|..+...+.+.|++++|...|++..+-.+.+ ..+|..+..++.+.|++++|...+++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55667777777777777777777777777633333 588999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH-HHHHHhchh
Q 041822 242 GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQA-RQLFDEMPK 310 (500)
Q Consensus 242 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~ 310 (500)
. +.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.|+.+++ ...|+.|..
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3478889999999999999999999999998875 34677888899999999999888 456666644
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.41 E-value=0.00045 Score=62.27 Aligned_cols=167 Identities=8% Similarity=0.026 Sum_probs=120.0
Q ss_pred HcCCCh-HHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcccc----------HHHHHHHHHHHHHHHhccccCCChhhHH
Q 041822 114 ARMRYF-DQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQS----------YEETLEAFDRMEREIFVGIRKFGSEEFN 182 (500)
Q Consensus 114 ~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 182 (500)
.+.|.+ ++|+++++.+....|...+ +|+.--..+...+. +++++..++.+... .|.+..+|+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~yt--aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-----~PKny~aW~ 112 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFAT--LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSYGTWH 112 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHH--HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHH--HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 344555 4788888888888776443 44433222322232 67888999988876 577888999
Q ss_pred HHHHHHHcCC--CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 183 VLLQAFCTQK--EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD-VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 183 ~ll~~~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
.-.-++...+ .+++++.+++.+.+..+-|..+|+.-..+....|. ++++...++.+++..+. |...|+.....+.+
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 8888888888 48999999999998778899999988888888888 58999999999887543 77788776666555
Q ss_pred c--------------CChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 260 K--------------GCFGDAMRLFEEMERVACLPSLQTITTLI 289 (500)
Q Consensus 260 ~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 289 (500)
. +.++++++.+.+..... +-|...|+-+-
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r 234 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHR 234 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4 34667777777776654 34555555433
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=6.5e-06 Score=61.42 Aligned_cols=102 Identities=10% Similarity=-0.067 Sum_probs=65.8
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHH
Q 041822 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRP--SVVTYNI 252 (500)
Q Consensus 175 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~ 252 (500)
+.+...+..+...+...|++++|...|++..+..+.+...+..+..++...|++++|...+++..+.. +. +...+..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 33455666666777777777777777777665445566666666666777777777777776666552 22 3556666
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHHcC
Q 041822 253 RIDGYCKK-GCFGDAMRLFEEMERVA 277 (500)
Q Consensus 253 li~~~~~~-g~~~~a~~~~~~m~~~~ 277 (500)
+..++... |++++|.+.+++..+..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 66666666 67777777666666543
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.2e-05 Score=61.74 Aligned_cols=90 Identities=7% Similarity=-0.053 Sum_probs=40.2
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc
Q 041822 146 LSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKES 225 (500)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 225 (500)
...+.+.|++++|+..|++.... .+.+...|..+..++.+.|++++|+..|++..+..+.+...|..+..++...
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 11 GKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 33344444444444444444433 2334444444444444444444444444444443333444444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 041822 226 GDVTAMEMFYHEMVL 240 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~ 240 (500)
|++++|...|++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 444444444444433
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.37 E-value=3e-06 Score=66.88 Aligned_cols=96 Identities=7% Similarity=-0.081 Sum_probs=55.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLL 220 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~ 220 (500)
.+..+...+.+.|++++|...|++.... .|.+...|..+..++.+.|++++|...|++..+..+.+...+..+..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 3344444555666666666666665554 34455556666666666666666666666665544445555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 041822 221 GFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~ 241 (500)
++...|++++|...|+...+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666555543
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=1.7e-05 Score=59.74 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYC 258 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 258 (500)
..+..+...+...|++++|...|+...+..+.+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3445555556666666666666666655444455556666666666666666666666555542 123455555555666
Q ss_pred hcCChhHHHHHHHHHHHc
Q 041822 259 KKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~ 276 (500)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666666666655544
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=6.2e-06 Score=69.32 Aligned_cols=131 Identities=11% Similarity=0.004 Sum_probs=89.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc--------------cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLL--------------TLKSMSIMLSRISKFQSYEETLEAFDRMEREIF 170 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 170 (500)
.+..+...+...|++++|...|++..+..|... ....+..+..+|...|++++|+..+++....
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 117 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-- 117 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 445555556666666666666666665443322 1256677778888899999999999988876
Q ss_pred ccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 041822 171 VGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAME-MFYHEMVL 240 (500)
Q Consensus 171 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 240 (500)
.+.+..++..+..++...|++++|.+.|++..+..+.+...+..+..++...++.+++. ..+..+..
T Consensus 118 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 ---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp ---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ---CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46678888999999999999999999999988755667788888887777776666555 44444443
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=3.3e-06 Score=65.19 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGF--RPS----VVTYNI 252 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~~ 252 (500)
..|..+...+...|++++|...|++..+..+.+...+..+...+...|++++|...++...+... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34556666666677777777777766654455666666666666667777777766666655421 111 455666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITT 287 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 287 (500)
+..++...|++++|.+.|++..+.. |+......
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 117 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKK 117 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHH
Confidence 6666667777777777777666643 44443333
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.34 E-value=6.5e-06 Score=61.41 Aligned_cols=97 Identities=10% Similarity=0.112 Sum_probs=49.6
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCC--Chhh
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKF--GSEE 180 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~ 180 (500)
...+..+...+...|++++|...+++..+..|. +...+..+...+...|++++|...|++..+. .+. +...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~ 78 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE--ESKYWLMKGKALYNLERYEEAVDCYNYVINV-----IEDEYNKDV 78 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----SCCTTCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CcccchHHH
Confidence 334445555555555555555555555554433 2334444445555555555555555555443 233 4445
Q ss_pred HHHHHHHHHcC-CCHHHHHHHHHHhhh
Q 041822 181 FNVLLQAFCTQ-KEMKEARSVFVKLLS 206 (500)
Q Consensus 181 ~~~ll~~~~~~-~~~~~A~~~~~~m~~ 206 (500)
+..+..++... |++++|.+.++...+
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 55555555555 555555555555554
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=9.3e-06 Score=63.38 Aligned_cols=97 Identities=13% Similarity=0.009 Sum_probs=46.7
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 102 TPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 102 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
+...+..+...+...|++++|...|+...+..|. +...+..+..++...|++++|...|++.... .+.+...|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 80 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSVKAH 80 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CchhHHHH
Confidence 3444444555555555555555555555444333 2334444444445555555555555544443 23344445
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhh
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
..+..++...|++++|...|++..
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555555555555555555444
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=3.9e-05 Score=73.22 Aligned_cols=203 Identities=7% Similarity=-0.064 Sum_probs=142.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhhCCCCcc---------------HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc
Q 041822 108 KTLHILARMRYFDQAWELMSHVQRTHPSLLT---------------LKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG 172 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 172 (500)
.-...+.+.|++++|++.+..+.+..+...+ ..++..+...|...|++++|.+.+..+......-
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3456678889999999999999886544322 1346778888999999999999998876643110
Q ss_pred ccC-CChhhHHHHHHHHHcCCCHHHHHHHHHHhhh-----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC
Q 041822 173 IRK-FGSEEFNVLLQAFCTQKEMKEARSVFVKLLS-----RF-APNNKTMNILLLGFKESGDVTAMEMFYHEMVLR--GF 243 (500)
Q Consensus 173 ~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~ 243 (500)
... ....+.+.+...+...|+.+.|..+++.... +. ..-..++..+...+...|++++|..+++++... +.
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 000 0112334444555567889999999988763 22 223467888899999999999999999887654 11
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHhchh
Q 041822 244 ---RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV----ACLPS--LQTITTLIHGAGLVRNIHQARQLFDEMPK 310 (500)
Q Consensus 244 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 310 (500)
.....++..++..|...|++++|...+++.... +.++. ...+..+...+...+++++|...|.+..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 112457888889999999999999999887642 21111 24566667777888999998887776644
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.33 E-value=1.1e-05 Score=62.21 Aligned_cols=98 Identities=16% Similarity=0.067 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRG--FRPS----VVTYNI 252 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~~~----~~~~~~ 252 (500)
.++..+...+.+.|++++|+..|++..+-.|.+...|+.+..+|.+.|++++|...+++.++.. ..++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3455666667777777777777777666445566667777777777777777777766665431 0111 124555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
+..++...|++++|++.|++....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666677777777777766653
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.32 E-value=1.7e-05 Score=64.23 Aligned_cols=94 Identities=9% Similarity=-0.020 Sum_probs=43.1
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLG 221 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~ 221 (500)
+..+...+.+.|++++|+..|++.... .+.+...|..+..+|.+.|++++|+..|++..+..+.+...|..+..+
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSI-----APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 333334444444444444444444433 233444444444444444444444444444444333344444444444
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 041822 222 FKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~ 240 (500)
+...|++++|...|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 4455555555554444443
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.31 E-value=1.4e-05 Score=61.59 Aligned_cols=62 Identities=10% Similarity=0.099 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh
Q 041822 69 VENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT 132 (500)
Q Consensus 69 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 132 (500)
.+.-+...+.+.|++++|++.|+++++.. |-+...|..+..++...|++++|++.++...+.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34445555556666666666666655532 334555555556666666666666666555543
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=2.1e-05 Score=62.09 Aligned_cols=112 Identities=13% Similarity=0.017 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC----HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHH
Q 041822 65 SSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPT----PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLK 140 (500)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 140 (500)
.....+..+...+...|++++|++.|+.+.+. .|+ ...+..+..++...|++++|...++...+..|. +..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~ 100 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--DVK 100 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--CHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--CHH
Confidence 44566667777788888888888888888875 344 566777777778888888888888887776554 345
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQ 186 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 186 (500)
.+..+..++...|++++|...|++.... .+.+...+..+..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~ 141 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSL-----EPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHH
Confidence 6666667777777777777777777665 3444444444433
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.31 E-value=1e-05 Score=65.60 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIML 146 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 146 (500)
...+..+...+...|++++|++.|+.+++.. +.+...+..+..++...|++++|+..+++..+..|. +...+..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 3344444555555555555555555555432 334445555555555555555555555555554433 233444444
Q ss_pred HHHhccccHHHHHHHHHHHHHH
Q 041822 147 SRISKFQSYEETLEAFDRMERE 168 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~ 168 (500)
.+|...|++++|...|++....
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 4455555555555555554443
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.30 E-value=6.8e-06 Score=63.31 Aligned_cols=108 Identities=7% Similarity=0.067 Sum_probs=68.0
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC---CCC----HH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRF---APN----NK 213 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~---~~~----~~ 213 (500)
.+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++..+.. .++ ..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 3445555666667777777777766655 34456666677777777777777777777766421 222 56
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041822 214 TMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRID 255 (500)
Q Consensus 214 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 255 (500)
++..+..++...|++++|...|+...+. .|+......+..
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 6677777777777777777777777665 345444444433
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=2e-05 Score=61.37 Aligned_cols=100 Identities=8% Similarity=-0.029 Sum_probs=61.5
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041822 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRI 254 (500)
Q Consensus 175 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 254 (500)
+.+...|..+...+...|++++|...|+...+..+.+...|..+..++...|+++.|...++...+.. +.+...+..+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 34455566666666666666666666666665444556666666666666666666666666666543 22455666666
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 041822 255 DGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~ 275 (500)
.+|...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666554
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=8.5e-05 Score=58.52 Aligned_cols=119 Identities=9% Similarity=-0.047 Sum_probs=99.5
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc-cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCCh
Q 041822 100 TPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLL-TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS 178 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 178 (500)
+.+...+..+...+...|++++|.+.|++..+..|... ....+..+...|...|++++|+..+++.... .+.+.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~ 99 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-----DGGDV 99 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TSCCH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----CccCH
Confidence 45778888999999999999999999999998766421 1567778888899999999999999998876 46678
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHH
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFK 223 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~ 223 (500)
..+..+..++...|++++|...|++..+..+.+...+..+.....
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 899999999999999999999999999755666777766655543
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.23 E-value=4.8e-05 Score=58.48 Aligned_cols=93 Identities=9% Similarity=0.019 Sum_probs=45.5
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhhCCCCcc-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCC---hhhHHHH
Q 041822 109 TLHILARMRYFDQAWELMSHVQRTHPSLLT-LKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFG---SEEFNVL 184 (500)
Q Consensus 109 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~l 184 (500)
+...+...|++++|.+.|+.+.+..|.... ...+..+..++...|++++|...|+++... .|.+ ..++..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~l 82 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcccHHHHHHH
Confidence 344444555555555555555554443221 123344444455555555555555555443 1222 3444555
Q ss_pred HHHHHcCCCHHHHHHHHHHhhh
Q 041822 185 LQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~ 206 (500)
..++.+.|++++|...|+.+.+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555554
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.22 E-value=1.1e-05 Score=61.56 Aligned_cols=86 Identities=10% Similarity=0.008 Sum_probs=37.4
Q ss_pred HhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH
Q 041822 149 ISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV 228 (500)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~ 228 (500)
+.+.|++++|+..|++.... .|.+...|..+..++...|++++|+..|++..+..+.+...+..+..++...|++
T Consensus 27 ~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQK-----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 33444444444444444433 2334444444444444444444444444444433233344444444444444444
Q ss_pred HHHHHHHHHHH
Q 041822 229 TAMEMFYHEMV 239 (500)
Q Consensus 229 ~~a~~~~~~~~ 239 (500)
++|...+++..
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.20 E-value=1.4e-05 Score=60.88 Aligned_cols=92 Identities=12% Similarity=0.011 Sum_probs=58.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhc
Q 041822 72 VLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISK 151 (500)
Q Consensus 72 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (500)
.+...+.+.|++++|+..|+.+.+.. |.+...+..+..++...|++++|+..+++..+..|. +...+..+..++..
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Confidence 34455566677777777777766642 445666666666677777777777777777666554 33455566666666
Q ss_pred cccHHHHHHHHHHHHH
Q 041822 152 FQSYEETLEAFDRMER 167 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~ 167 (500)
.|++++|+..|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6777777766666544
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.12 E-value=8.3e-05 Score=57.09 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=45.5
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCCh---hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---HHhHHHHHH
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGS---EEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN---NKTMNILLL 220 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~---~~~~~~l~~ 220 (500)
..+...|++++|...|+++.... |.+. .++..+..++.+.|++++|...|+...+..+.+ ...+..+..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34445555555555555555441 2222 345555555555555555555555555432333 344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 041822 221 GFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~ 241 (500)
++.+.|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555555555555555555443
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.12 E-value=4e-05 Score=73.59 Aligned_cols=144 Identities=11% Similarity=-0.029 Sum_probs=86.3
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHH
Q 041822 103 PDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFN 182 (500)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 182 (500)
...+......+.+.|++++|...|++..+..|..... . .+... ++ .+....+|.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~-~~~~~----~~--------~~~~~~~~~ 321 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL-------------S-EKESK----AS--------ESFLLAAFL 321 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-------------C-HHHHH----HH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC-------------C-hHHHH----HH--------HHHHHHHHH
Confidence 4456777777888888888888888887765543220 0 00000 00 011234566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041822 183 VLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC 262 (500)
Q Consensus 183 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 262 (500)
.+..+|.+.|++++|+..|++.++..+.+...|..+..++...|++++|...|++..+.. +-+...+..+..++.+.|+
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence 667777777777777777777766445566677777777777777777777777766652 1234556666666666666
Q ss_pred hhHHHH-HHHHH
Q 041822 263 FGDAMR-LFEEM 273 (500)
Q Consensus 263 ~~~a~~-~~~~m 273 (500)
.+++.+ .+..|
T Consensus 401 ~~~a~~~~~~~~ 412 (457)
T 1kt0_A 401 HNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 666553 34444
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.10 E-value=3.7e-05 Score=61.58 Aligned_cols=133 Identities=11% Similarity=-0.030 Sum_probs=65.4
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhcc-ccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhC--CCCC----HHh
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVG-IRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSR--FAPN----NKT 214 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~----~~~ 214 (500)
+..+...+...|++++|...+++........ .......++..+...+...|++++|.+.+++..+- ...+ ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 3444455555666666666665554432100 00001135566666666677777777766665531 0011 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 215 MNILLLGFKESGDVTAMEMFYHEMVLR----GFR-PSVVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
+..+...+...|++++|...+++..+. +.. .....+..+...|...|++++|.+.+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 555555556666666666655554432 100 012234445555555555555555555543
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.07 E-value=4.6e-05 Score=61.01 Aligned_cols=137 Identities=11% Similarity=0.002 Sum_probs=90.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc----cHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc-ccCCChh
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHPSLL----TLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVG-IRKFGSE 179 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ 179 (500)
++..+...+...|++++|...+++..+..+... ....+..+...+...|++++|...+++........ ..+....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455566666666777777776666655321111 12345566677777888888888887765543110 0011244
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhh---CCC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLS---RFA---PNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
++..+...+...|++++|.+.+++..+ ... ....++..+...+...|++++|...+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 677888889999999999999988774 111 12456788888999999999999999887653
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=1.6e-05 Score=76.73 Aligned_cols=119 Identities=12% Similarity=-0.054 Sum_probs=89.8
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 226 (500)
..+.+.|++++|.+.|++..+. .+.+..+|..+..+|.+.|++++|++.+++..+..+.+..+|..+..++.+.|
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3466788889999988888776 46678888889999999999999999999888766677888888888999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 041822 227 DVTAMEMFYHEMVLRGFRPSVVTYNIRIDG--YCKKGCFGDAMRLFE 271 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 271 (500)
++++|...|++..+... -+...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999888877631 133445445444 777888888888887
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.03 E-value=0.00033 Score=68.93 Aligned_cols=173 Identities=8% Similarity=-0.006 Sum_probs=110.4
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCC----------hHHHHHHHHHhHhhCCCCccHHHHHHHHHHH
Q 041822 80 HSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRY----------FDQAWELMSHVQRTHPSLLTLKSMSIMLSRI 149 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 149 (500)
....++|++.++.++... |-+..+|+..-.++...|+ ++++++.++.+.+..|. ++.+|..-.-.+
T Consensus 42 ~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK--~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--SYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Confidence 334457788888877753 3445556666666655555 77778888877777554 555666655556
Q ss_pred hccc--cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCC-CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhc-
Q 041822 150 SKFQ--SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQK-EMKEARSVFVKLLSRFAPNNKTMNILLLGFKES- 225 (500)
Q Consensus 150 ~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~- 225 (500)
.+.| +++++++.++++.+. .+.+..+|+.-.-++.+.| .++++++.++++.+..+-|...|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~-----d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred HHcccccHHHHHHHHHHHHhh-----ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhc
Confidence 6667 567788877777776 4667777777777777777 777777777777776666777777776666553
Q ss_pred -------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041822 226 -------------GDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC 262 (500)
Q Consensus 226 -------------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 262 (500)
+.++++.+.++...... +-|...|+.+-..+.+.++
T Consensus 193 ~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 193 PQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 23455555555555442 2244455554444444444
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=1.7e-05 Score=76.59 Aligned_cols=120 Identities=8% Similarity=0.066 Sum_probs=95.6
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccc
Q 041822 74 GRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQ 153 (500)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 153 (500)
...+...|++++|++.|+++.+.. +.+...+..+..++.+.|++++|++.+++..+..|. +...+..+..+|...|
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Confidence 345567899999999999998863 556888999999999999999999999999988665 4567888888999999
Q ss_pred cHHHHHHHHHHHHHHHhccccCCChhhHHHHHHH--HHcCCCHHHHHHHHH
Q 041822 154 SYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQA--FCTQKEMKEARSVFV 202 (500)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~ 202 (500)
++++|++.|++..+. .+.+...+..+..+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKV-----KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHH-----STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999998876 35566677777666 888899999999988
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.96 E-value=0.00013 Score=70.03 Aligned_cols=133 Identities=10% Similarity=0.012 Sum_probs=101.4
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN---------------NKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
....|..+...+.+.|++++|...|++..+-.+.+ ...|..+..++.+.|++++|...+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 45566667777777777777777777776532333 588999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHhchhC
Q 041822 242 GFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQAR-QLFDEMPKR 311 (500)
Q Consensus 242 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~ 311 (500)
. +.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.+++. ..+..|...
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 3368889999999999999999999999998865 335567888888888889888776 456666543
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.95 E-value=0.00097 Score=65.57 Aligned_cols=175 Identities=8% Similarity=0.010 Sum_probs=139.0
Q ss_pred CChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcccc----------HHHHHHHHHHHHHHHhccccCCChhhHHHHHH
Q 041822 117 RYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQS----------YEETLEAFDRMEREIFVGIRKFGSEEFNVLLQ 186 (500)
Q Consensus 117 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 186 (500)
..-++|.+.++.+.+..|.. ..+|+.--.++...|+ ++++++.++.+.+. .|.+..+|+.-.-
T Consensus 43 ~~~eeal~~~~~~l~~nP~~--~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-----~pK~y~aW~hR~w 115 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDF--ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSYGTWHHRCW 115 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCchh--HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Confidence 34478899999999987764 4566655555556666 99999999999887 5788999999999
Q ss_pred HHHcCC--CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 041822 187 AFCTQK--EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG-DVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKK--- 260 (500)
Q Consensus 187 ~~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--- 260 (500)
++.+.+ +++++++.++++.+..+-|..+|+.-..+..+.| .++++.+.++++++.... |...|+.....+.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccc
Confidence 999999 7799999999999877789999999998888988 889999999999887533 778888777776653
Q ss_pred -----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 041822 261 -----------GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQ 300 (500)
Q Consensus 261 -----------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 300 (500)
+.++++++.+++..... +-+...|.-+-..+.+.++.++
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55788888888888765 3466677777776766666433
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.95 E-value=1.6e-05 Score=60.25 Aligned_cols=87 Identities=8% Similarity=0.098 Sum_probs=48.5
Q ss_pred cCChHHHHHHHHHhhcCCC-CCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHH
Q 041822 80 HSNGLKALEFFKFTLQHPH-FTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEET 158 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 158 (500)
.|++++|+..|+++++... -+.+...+..+..++...|++++|+..|++..+..|+. ...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH--QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHcCCHHHH
Confidence 4566666666666665410 12234455666666666666666666666666665543 34555555666666666666
Q ss_pred HHHHHHHHHH
Q 041822 159 LEAFDRMERE 168 (500)
Q Consensus 159 ~~~~~~~~~~ 168 (500)
+..|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666665554
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.95 E-value=0.00011 Score=68.15 Aligned_cols=124 Identities=9% Similarity=-0.032 Sum_probs=65.8
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhc-----------cccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFV-----------GIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAP 210 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~ 210 (500)
+..+...+.+.|++++|+..|++..+.... ...+.+..+|..+..+|.+.|++++|++.+++.++..+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 444555666677777777777766542100 001223445555666666666666666666666554444
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 041822 211 NNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDA 266 (500)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a 266 (500)
+...|..+..++...|++++|...|++..+.. +.+...+..+..++...++.+++
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666666665555442 11344444444444444444443
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.94 E-value=0.00015 Score=58.34 Aligned_cols=60 Identities=13% Similarity=0.048 Sum_probs=27.8
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
+..+..+|.+.|++++|+..+++.... .|.+..+|..+..+|...|++++|...|+...+
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKR-----EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 344444444444444444444444443 233444444444444444444444444444443
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.92 E-value=8.7e-05 Score=68.94 Aligned_cols=124 Identities=10% Similarity=0.012 Sum_probs=90.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhC--------------CCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTH--------------PSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIF 170 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 170 (500)
.+..+...+.+.|++++|++.+++..+.. ........+..+..+|.+.|++++|+..+++..+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 35566666777777777777777766511 01123456777778888889999999888888765
Q ss_pred ccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 041822 171 VGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEM 233 (500)
Q Consensus 171 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 233 (500)
.+.+..+|..+..+|...|++++|.+.|++..+..+.+...+..+..++...++.+++.+
T Consensus 303 ---~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 ---DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888889999999999999988887555677777777777777666655543
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.91 E-value=0.0002 Score=57.67 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=47.8
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
+...|..+..+|.+.|++++|+..++..++-.+.+...|..+..++...|++++|...|+...+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 44567777777777777777777777777655666777777777777777777777777777665
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.89 E-value=5.2e-05 Score=69.58 Aligned_cols=147 Identities=10% Similarity=0.004 Sum_probs=73.0
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHH
Q 041822 104 DAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNV 183 (500)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (500)
..+......+.+.|++++|...|++..+..|... .+...|+.+++...+. ..+|..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~----------~~~~~~~~~~~~~~l~--------------~~~~~n 235 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF----------MFQLYGKYQDMALAVK--------------NPCHLN 235 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH----------HHTCCHHHHHHHHHHH--------------THHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch----------hhhhcccHHHHHHHHH--------------HHHHHH
Confidence 3455666667777888888888887776543211 1233444444432221 125666
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHhcC
Q 041822 184 LLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRP-SVVTYNIRIDG-YCKKG 261 (500)
Q Consensus 184 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~-~~~~g 261 (500)
+..+|.+.|++++|+..+++.++..+.+...|..+..++...|++++|...|++..+. .| +...+..+... ....+
T Consensus 236 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 236 IAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777655556777777777777777777777777776654 22 33344444443 23345
Q ss_pred ChhHHHHHHHHHHHc
Q 041822 262 CFGDAMRLFEEMERV 276 (500)
Q Consensus 262 ~~~~a~~~~~~m~~~ 276 (500)
..+++.++|..|...
T Consensus 314 ~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 314 LYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHhhCC
Confidence 666677777776654
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.87 E-value=2.2e-05 Score=59.36 Aligned_cols=60 Identities=13% Similarity=0.126 Sum_probs=24.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMV 239 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (500)
++..+..+|...|++++|...|++..+..+.+...+..+..++...|++++|...+++..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444444443333334444444444444444444444444433
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.84 E-value=6.6e-05 Score=68.91 Aligned_cols=149 Identities=10% Similarity=0.021 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHH
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIML 146 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 146 (500)
...+..+...+.+.|++++|+..|+.++... |+... +...|+.+++...+. ...+..+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla 237 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH-----------HHHHHHHH
Confidence 4446677788889999999999999988752 43331 223333444332221 12566677
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHH-Hhc
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGF-KES 225 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~-~~~ 225 (500)
.+|.+.|++++|+..|++.... .+.+..+|..+..+|...|++++|...|++..+..+.+...+..+.... ...
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTE-----EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 7888888888888888888776 4667788888888888888899998888888764455666666666553 334
Q ss_pred CCHHHHHHHHHHHHHC
Q 041822 226 GDVTAMEMFYHEMVLR 241 (500)
Q Consensus 226 ~~~~~a~~~~~~~~~~ 241 (500)
+..+.+...|..|...
T Consensus 313 ~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 313 ALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHhhCC
Confidence 5567777888777655
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.83 E-value=0.00065 Score=52.91 Aligned_cols=111 Identities=10% Similarity=-0.021 Sum_probs=64.9
Q ss_pred ccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHh----cCCH
Q 041822 153 QSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKE----SGDV 228 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~----~~~~ 228 (500)
+++++|++.|++..+.+ +.... +...|...+.+++|.+.|++..+. -+...+..|...|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g-------~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-------EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-------CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCC-------CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccH
Confidence 45666666666665543 22233 555555555666666666666542 255566666666665 5666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 041822 229 TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK----KGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 277 (500)
++|..+|+...+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666666654 45555556666655 566666666666666554
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.80 E-value=0.00067 Score=52.82 Aligned_cols=110 Identities=15% Similarity=0.025 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHH
Q 041822 193 EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK----KGCFGDAMR 268 (500)
Q Consensus 193 ~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~ 268 (500)
+.++|.+.|++..+.-.++.. |...|...+.++.|.++|++..+.| +...+..|...|.. .+++++|++
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 345555555555542222222 4444555555555555555555553 44555555555554 455555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHhchhCC
Q 041822 269 LFEEMERVACLPSLQTITTLIHGAGL----VRNIHQARQLFDEMPKRN 312 (500)
Q Consensus 269 ~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 312 (500)
+|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555555543 33444444444444 445555555555554443
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.77 E-value=0.00037 Score=54.99 Aligned_cols=100 Identities=11% Similarity=0.004 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCc----------cHHHHHHHHHHHhccccHHHHHHHHHHHHHH-H-hccc
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLL----------TLKSMSIMLSRISKFQSYEETLEAFDRMERE-I-FVGI 173 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~ 173 (500)
+......+.+.|++++|+..|+...+..|..+ +...|.....++.+.|++++|+..+++..+. + ....
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 33444445555555555555555555444321 1124455555555556666665555555443 0 0000
Q ss_pred cCCChhhH----HHHHHHHHcCCCHHHHHHHHHHhh
Q 041822 174 RKFGSEEF----NVLLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 174 ~~~~~~~~----~~ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
.|.+...| .....++...|++++|+..|++..
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 12334455 555555556666666666555554
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.73 E-value=0.00044 Score=66.40 Aligned_cols=97 Identities=9% Similarity=0.056 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhh----CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLS----RFAP----NNKTMNILLLGFKESGDVTAMEMFYHEMVLR-----GFR- 244 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g~~- 244 (500)
.+++.|..+|...|++++|+.++++.++ -..| ...+++.|...|...|++++|+.++++..+. |..
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444444444444444444444444432 0111 1234455555555555555555554444321 211
Q ss_pred CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 245 PS-VVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 245 ~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
|+ ..+.+.+-.++...+.+++|..+|..+++
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 22233444455555666666666666554
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.72 E-value=0.00055 Score=53.99 Aligned_cols=65 Identities=17% Similarity=0.014 Sum_probs=35.5
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhcc-------ccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRMEREIFVG-------IRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
+......+.+.|++++|+..|++..+..... ..+.+...|+.+..++.+.|++++|+..+++.++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555667788888888888877664210 0000112555555555555555555555555543
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.71 E-value=0.00045 Score=66.32 Aligned_cols=125 Identities=10% Similarity=-0.025 Sum_probs=59.8
Q ss_pred HHcCChhHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHHcCCHhhHHHHHHHHHH-----CCCC-C-CHhHHHHH
Q 041822 363 MKSSGLEGVCKLYDRMIE---GKFVPK----TRTVVMLMKFFCVNFRVDLGLNLWGYLID-----RGFC-P-HGHALDLL 428 (500)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~---~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l 428 (500)
...|++++|..++++..+ .-+.|+ ..+++.|...|...|++++|..++++.++ .|.. | ...+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345555555555555432 111111 34455555555556666666655555543 1211 1 12345555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHHcCchhHHHHHHHHHHHhh
Q 041822 429 VTGLCSRGRWEEAFECSKQMLVR-----RR-QVS-EASYRMLQRYLVQANANEKLEDLDRMIKNLQ 487 (500)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 487 (500)
...|...|++++|..++++..+. |- .|+ ..+.+.+..++...+.++.++.+++.+++..
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665555431 21 111 1222344455555555666666655555433
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.70 E-value=5e-05 Score=56.51 Aligned_cols=89 Identities=10% Similarity=-0.032 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPS-------VVTY 250 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-------~~~~ 250 (500)
...|..+...+...|++++|.+.|++..+..+.+...+..+..++.+.|++++|...+++..+. .|+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHH
Confidence 3445566666666666666666666666544555666666666666666666666666666654 232 3334
Q ss_pred HHHHHHHHhcCChhHHHH
Q 041822 251 NIRIDGYCKKGCFGDAMR 268 (500)
Q Consensus 251 ~~li~~~~~~g~~~~a~~ 268 (500)
..+..++...|+++.|++
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 444444444444444433
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.55 E-value=0.00083 Score=50.21 Aligned_cols=80 Identities=11% Similarity=-0.036 Sum_probs=62.1
Q ss_pred HHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHH
Q 041822 85 KALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDR 164 (500)
Q Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 164 (500)
.|++.|+.+.+.. +.+...+..+...+...|++++|...+++..+..|. ....+..+..+|...|++++|...|++
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT--YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4677777777753 556778888888888888888888888888887665 345677777888888888888888888
Q ss_pred HHHH
Q 041822 165 MERE 168 (500)
Q Consensus 165 ~~~~ 168 (500)
....
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7655
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.55 E-value=0.0009 Score=47.27 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=28.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
.+..+...+...|++++|...|++..+..+.+...+..+..++.+.|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444444444444444444444444433333444444444444455555555555444444
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00048 Score=50.94 Aligned_cols=88 Identities=15% Similarity=0.079 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC------HH
Q 041822 140 KSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPN------NK 213 (500)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~------~~ 213 (500)
..+..+...+...|++++|+..|++.... .+.+...|..+..++.+.|++++|.+.|++..+..+.+ ..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 45566677778888888888888888776 46677888888888888888988888888888644444 45
Q ss_pred hHHHHHHHHHhcCCHHHHH
Q 041822 214 TMNILLLGFKESGDVTAME 232 (500)
Q Consensus 214 ~~~~l~~~~~~~~~~~~a~ 232 (500)
.+..+..++...|+.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHhHhhhH
Confidence 5555555555555544443
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.51 E-value=0.00029 Score=55.45 Aligned_cols=95 Identities=9% Similarity=0.155 Sum_probs=67.2
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCH----------HHHHHHHHHhhhCCCCCHHhHHHHH
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEM----------KEARSVFVKLLSRFAPNNKTMNILL 219 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----------~~A~~~~~~m~~~~~~~~~~~~~l~ 219 (500)
.+.+.+++|.+.+++..+. .|.+...|+.+..++.+.+++ ++|+..|++.++-.+.+..+|..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l-----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS-----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 4567788888888888777 577888888888888877664 4777777777765556777777787
Q ss_pred HHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 041822 220 LGFKESG-----------DVTAMEMFYHEMVLRGFRPSVVTYN 251 (500)
Q Consensus 220 ~~~~~~~-----------~~~~a~~~~~~~~~~g~~~~~~~~~ 251 (500)
.+|...| ++++|.+.|++.++. .|+...|.
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~ 128 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 128 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence 7777664 566666666666655 45444443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.49 E-value=0.00096 Score=47.14 Aligned_cols=76 Identities=18% Similarity=0.136 Sum_probs=34.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLL 220 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~ 220 (500)
.+..+...+...|++++|...|++.... .+.+..++..+..++.+.|++++|...|++..+..+.+...+..+..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3344444444555555555555554443 23344444445555555555555555555544432333444444333
Q ss_pred H
Q 041822 221 G 221 (500)
Q Consensus 221 ~ 221 (500)
+
T Consensus 86 ~ 86 (91)
T 1na3_A 86 A 86 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.45 E-value=0.00089 Score=50.06 Aligned_cols=77 Identities=12% Similarity=-0.056 Sum_probs=34.3
Q ss_pred HHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 197 ARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 197 A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
|...|++..+..+.+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444443333344444444444444444444444444444432 1133344444444444555555555544443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.44 E-value=0.00045 Score=54.34 Aligned_cols=98 Identities=12% Similarity=0.127 Sum_probs=66.7
Q ss_pred CCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcccc----------HHHHHHHHHHHHHHHhccccCCChhhHHHHH
Q 041822 116 MRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQS----------YEETLEAFDRMEREIFVGIRKFGSEEFNVLL 185 (500)
Q Consensus 116 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll 185 (500)
.+.+++|.+.++...+..|. +...+..+..++...++ +++|+..|++..+. .|.+..+|..+.
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~~A~~~LG 87 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcHHHHHHHH
Confidence 34456666666666666554 33445545555555544 56888888888877 467788899999
Q ss_pred HHHHcCC-----------CHHHHHHHHHHhhhCCCCCHHhHHHHHHH
Q 041822 186 QAFCTQK-----------EMKEARSVFVKLLSRFAPNNKTMNILLLG 221 (500)
Q Consensus 186 ~~~~~~~-----------~~~~A~~~~~~m~~~~~~~~~~~~~l~~~ 221 (500)
.+|...| ++++|++.|++.++ +.|+...|...+..
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~-l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVD-EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Confidence 9998764 89999999999886 34565555554443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.42 E-value=0.00061 Score=49.55 Aligned_cols=66 Identities=12% Similarity=-0.036 Sum_probs=41.1
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 175 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
|.+...+..+...|.+.|++++|+..|++..+..+.+...|..+..++...|++++|...|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345556666666666666666666666666654445556666666666666666666666665553
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.37 E-value=0.00063 Score=49.49 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT 132 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 132 (500)
...+..+..++...|++++|++.|+.+.+.. +.+...|..+..++...|++++|.+.+++..+.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444555666666667777777666666642 344556666666666667776666666666543
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.05 E-value=0.023 Score=51.42 Aligned_cols=153 Identities=10% Similarity=0.044 Sum_probs=88.3
Q ss_pred CCCHHhHHHHHHHHHc--C---CChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcccc
Q 041822 100 TPTPDAFEKTLHILAR--M---RYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIR 174 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 174 (500)
+.+...|...+++... . .+..+|+.+|++..+..|+... .+..+.-+|.- .... .
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~--A~A~la~a~~~-------------~~~~-----~ 250 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY--ARAEKALVDIV-------------RHSQ-----H 250 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHH-------------HHHH-----S
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHH-------------Hhcc-----C
Confidence 5677788777766542 2 3357899999999999887543 33333333320 0000 0
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041822 175 KFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRI 254 (500)
Q Consensus 175 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 254 (500)
+.+...... ...+.+... .....+.+..+|..+...+...|+++.|...++++...+ |+...|..+.
T Consensus 251 ~~~~~~~~~----------l~~a~~a~~-a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG 317 (372)
T 3ly7_A 251 PLDEKQLAA----------LNTEIDNIV-TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLG 317 (372)
T ss_dssp CCCHHHHHH----------HHHHHHHHH-TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred CCchhhHHH----------HHHHHHHHH-hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHH
Confidence 001000000 012222111 112345677777777666666678888888877777764 6766666667
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 041822 255 DGYCKKGCFGDAMRLFEEMERVACLPSLQTITT 287 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 287 (500)
..+.-.|++++|.+.|++....+ |...+|..
T Consensus 318 ~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~~ 348 (372)
T 3ly7_A 318 KVYEMKGMNREAADAYLTAFNLR--PGANTLYW 348 (372)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--CSHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CCcChHHH
Confidence 77777788888888887777654 66665543
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.04 E-value=0.057 Score=48.95 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHH
Q 041822 244 RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYN 321 (500)
Q Consensus 244 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 321 (500)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5678888888888888899999999999999986 88888888888999999999999999999886 45666654
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.88 E-value=0.0044 Score=44.55 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=64.0
Q ss_pred HHHHhhcCChHHHHHHHHHhhcCCCCCCCHH-hHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhcc
Q 041822 74 GRLFAAHSNGLKALEFFKFTLQHPHFTPTPD-AFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKF 152 (500)
Q Consensus 74 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (500)
...+...|++++|++.|+.+.+.. +.+.. .+..+..++...|++++|.+.|++..+..|........
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---------- 74 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR---------- 74 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH----------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH----------
Confidence 455677899999999999998863 45677 88899999999999999999999999988765432211
Q ss_pred ccHHHHHHHHHHHHHH
Q 041822 153 QSYEETLEAFDRMERE 168 (500)
Q Consensus 153 g~~~~a~~~~~~~~~~ 168 (500)
+.+.++...|++....
T Consensus 75 ~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYN 90 (99)
T ss_dssp HHHHHHHHHHCCTTHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5666777777665544
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.86 E-value=0.024 Score=58.70 Aligned_cols=45 Identities=7% Similarity=0.170 Sum_probs=23.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 041822 328 IRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRM 378 (500)
Q Consensus 328 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 378 (500)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555553322 14455555555555555555555555554
No 213
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.11 Score=41.36 Aligned_cols=129 Identities=14% Similarity=0.163 Sum_probs=88.3
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 226 (500)
......|+++.|.++.+.+. +...|..|.....+.|+++-|++.|.+..+ +..+.-.|.-.|
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~----------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg 74 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN----------DSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTG 74 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC----------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHhC----------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhC
Confidence 34457889999988877652 566899999999999999999999998875 556666777788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 041822 227 DVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFD 306 (500)
Q Consensus 227 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 306 (500)
+.+...++-+.....| -++.....+.-.|+++++.++|.+..+ .|.... .....|..+.|.++.+
T Consensus 75 ~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~~------~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAYA------VAKANGDEAAASAFLE 139 (177)
T ss_dssp CHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHHH------HHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHHH------HHHHcCcHHHHHHHHH
Confidence 8887777665555554 245555566677888888888865433 121111 1122455667777766
Q ss_pred hc
Q 041822 307 EM 308 (500)
Q Consensus 307 ~~ 308 (500)
++
T Consensus 140 ~~ 141 (177)
T 3mkq_B 140 QA 141 (177)
T ss_dssp HT
T ss_pred Hh
Confidence 55
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.70 E-value=0.014 Score=54.99 Aligned_cols=92 Identities=11% Similarity=-0.025 Sum_probs=69.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHHcCCHhhHHHHHHHHHH-----CCC-CC-CHhH
Q 041822 359 FFGLMKSSGLEGVCKLYDRMIEGK---FVPK----TRTVVMLMKFFCVNFRVDLGLNLWGYLID-----RGF-CP-HGHA 424 (500)
Q Consensus 359 i~~~~~~g~~~~a~~~~~~~~~~~---~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~-~~-~~~~ 424 (500)
+..+.+.|++++|..++++..+.. +.|+ ..+++.+...|...|++++|+.+++++++ .|. .| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667889999999998887431 2233 56788888899999999999999988774 231 12 2356
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 041822 425 LDLLVTGLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 425 ~~~li~~~~~~g~~~~A~~~~~~m~~ 450 (500)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999988764
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.68 E-value=0.01 Score=55.85 Aligned_cols=86 Identities=8% Similarity=-0.084 Sum_probs=62.1
Q ss_pred cCChhHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHHcCCHhhHHHHHHHHHH-----CCC-CCC-HhHHHHHHH
Q 041822 365 SSGLEGVCKLYDRMIE---GKFVPK----TRTVVMLMKFFCVNFRVDLGLNLWGYLID-----RGF-CPH-GHALDLLVT 430 (500)
Q Consensus 365 ~g~~~~a~~~~~~~~~---~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~li~ 430 (500)
.|++++|..++++..+ .-+.|+ ..+++.+..+|...|++++|+.++++.++ .|. .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4678888888877653 222233 56778888888888888888888888774 231 122 356888888
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q 041822 431 GLCSRGRWEEAFECSKQMLV 450 (500)
Q Consensus 431 ~~~~~g~~~~A~~~~~~m~~ 450 (500)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 89999999999998888764
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.68 E-value=0.032 Score=57.73 Aligned_cols=153 Identities=14% Similarity=0.164 Sum_probs=101.2
Q ss_pred hhcCChHHHHH-HHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHH
Q 041822 78 AAHSNGLKALE-FFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYE 156 (500)
Q Consensus 78 ~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (500)
...+++++|.+ ++.. + ++......++..+.+.|..++|.++.+.-. .-+......|+++
T Consensus 610 ~~~~~~~~a~~~~l~~------i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN------V-EGKDSLTKIARFLEGQEYYEEALNISPDQD-------------QKFELALKVGQLT 669 (814)
T ss_dssp HHTTCHHHHHHHTGGG------C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH-------------HHHHHHHHHTCHH
T ss_pred HHhCCHHHHHHHHHhc------C-CchHHHHHHHHHHHhCCChHHheecCCCcc-------------hheehhhhcCCHH
Confidence 34677887766 4321 1 213344778888888899888887653211 1133355779999
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 041822 157 ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYH 236 (500)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 236 (500)
+|.++.+.+ .+...|..+...+.+.|+++.|+++|.++.+ |..+...+...|+.+...++-+
T Consensus 670 ~A~~~~~~~----------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 670 LARDLLTDE----------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHHTTC----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhh----------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHH
Confidence 998886544 2566899999999999999999999998864 5556666666777777666655
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 237 EMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 237 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
.....| -++....+|.+.|++++|++++.++.
T Consensus 732 ~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 732 DAETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 555543 23444445666677777777665543
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.62 E-value=0.012 Score=55.52 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=38.6
Q ss_pred CChHHHHHHHHHhHhh-----CCCCc-cHHHHHHHHHHHhccccHHHHHHHHHHHHHHH--hccccCCC-hhhHHHHHHH
Q 041822 117 RYFDQAWELMSHVQRT-----HPSLL-TLKSMSIMLSRISKFQSYEETLEAFDRMEREI--FVGIRKFG-SEEFNVLLQA 187 (500)
Q Consensus 117 g~~~~a~~~~~~~~~~-----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~-~~~~~~ll~~ 187 (500)
|++++|..++++..+. +++.+ ...+++.+...|...|++++|+.++++..... ..|...|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554432 22221 22344445555555555555555555443211 11111111 2234555555
Q ss_pred HHcCCCHHHHHHHHHHhh
Q 041822 188 FCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 188 ~~~~~~~~~A~~~~~~m~ 205 (500)
|...|++++|+.++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 555555555555554443
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.54 E-value=0.04 Score=51.94 Aligned_cols=96 Identities=11% Similarity=-0.001 Sum_probs=52.8
Q ss_pred HHHHHcCCChHHHHHHHHHhHhh-----CCCC-ccHHHHHHHHHHHhccccHHHHHHHHHHHHHHH--hccccCC-Chhh
Q 041822 110 LHILARMRYFDQAWELMSHVQRT-----HPSL-LTLKSMSIMLSRISKFQSYEETLEAFDRMEREI--FVGIRKF-GSEE 180 (500)
Q Consensus 110 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~-~~~~ 180 (500)
+..+.+.|++++|+.++++..+. +++. ....+++.+...|...|++++|+..+++..... ..|...| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455666777777777666543 2222 233455666666666677777766666554321 1111112 2234
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhh
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLL 205 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~ 205 (500)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5666666666666666666666655
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.37 E-value=0.023 Score=40.56 Aligned_cols=64 Identities=9% Similarity=0.179 Sum_probs=39.3
Q ss_pred HHHhccccHHHHHHHHHHHHHHHhccccCCChh-hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhH
Q 041822 147 SRISKFQSYEETLEAFDRMEREIFVGIRKFGSE-EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTM 215 (500)
Q Consensus 147 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~ 215 (500)
..+...|++++|...|++..+. .+.+.. .|..+..++...|++++|.+.|++..+..+.+...+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455666777777777766655 344555 666666677777777777777777665333333333
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.31 E-value=0.22 Score=37.31 Aligned_cols=138 Identities=10% Similarity=0.039 Sum_probs=73.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 041822 260 KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMEL 339 (500)
Q Consensus 260 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 339 (500)
.|..++..++..+..... +..-||.+|--....-+-+-..++++.+-+. .|. ..+|++......
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 466666666666666542 4455555555555555555555555444332 121 123333333333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCC
Q 041822 340 MDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFC 419 (500)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 419 (500)
+-.+-. +....+..+..+..+|.-+...+++..+.. +..|++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 322211 344455556666666666666666666433 23556666666666677777777777776666666643
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.14 E-value=0.08 Score=37.45 Aligned_cols=70 Identities=9% Similarity=-0.094 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhcCC---hHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCcc
Q 041822 67 TLVENVLGRLFAAHSN---GLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLT 138 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 138 (500)
..++..+..++...++ .++|..+|+++++.+ |-+......+...+...|++++|+..++.+.+..|..+.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 3444455555543333 678888888888764 566777777888888888888888888888887666444
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.19 Score=40.05 Aligned_cols=128 Identities=9% Similarity=0.029 Sum_probs=73.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhhH
Q 041822 327 LIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDLG 406 (500)
Q Consensus 327 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 406 (500)
....|+++.|.++.+++. +...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 346677777777766551 567777777777777777777777766542 33344445556666665
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHH
Q 041822 407 LNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANANEKLEDLDRMIK 484 (500)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 484 (500)
..+-+.....| -++....++.-.|+++++.++|.+. |..|-.. -.....|..+.+.++.+.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 55555554444 2344444555567777777776554 3222111 12233555666666665553
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.91 E-value=0.05 Score=38.53 Aligned_cols=66 Identities=6% Similarity=-0.041 Sum_probs=33.4
Q ss_pred CChhhHHHHHHHHHcCCC---HHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 176 FGSEEFNVLLQAFCTQKE---MKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 176 ~~~~~~~~ll~~~~~~~~---~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
.+...+..+..++...++ .++|..++++.++-.+.+......+...+.+.|++++|...|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444432222 455555555555444445555555555555555555555555555544
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.81 E-value=0.85 Score=39.67 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHH
Q 041822 229 TAMEMFYHEMVLRGFRPS---VVTYNIRIDGYCK-----KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLV-RNIH 299 (500)
Q Consensus 229 ~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~ 299 (500)
..|...+++.++. .|+ ...|..+...|.+ -|+.++|.+.|++..+.+-.-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4666666666665 454 4577778888877 388888888888888765211366666777777774 8888
Q ss_pred HHHHHHHhchhCCCC--CCHhhHH
Q 041822 300 QARQLFDEMPKRNLK--PDIGAYN 321 (500)
Q Consensus 300 ~a~~~~~~~~~~~~~--~~~~~~~ 321 (500)
.+.+.+++..+.... |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 888888888886554 5543333
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.76 E-value=0.11 Score=37.57 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=13.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhhCC
Q 041822 105 AFEKTLHILARMRYFDQAWELMSHVQRTHP 134 (500)
Q Consensus 105 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 134 (500)
.+..+..++.+.|+++.|...++++.+..|
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 344444444444444444444444444433
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.50 E-value=0.095 Score=40.69 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHhhHHHHHHHHHHCCCCC--CHhHHHHHHHHHhcCCCHHHHH
Q 041822 368 LEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNF---RVDLGLNLWGYLIDRGFCP--HGHALDLLVTGLCSRGRWEEAF 442 (500)
Q Consensus 368 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~ 442 (500)
...+.+.|.+..+.+. ++..+...+..++++++ +++++..+++...+.+ .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555443 56666666677777766 5567777777777654 23 2333334556677778888888
Q ss_pred HHHHHHHHc
Q 041822 443 ECSKQMLVR 451 (500)
Q Consensus 443 ~~~~~m~~~ 451 (500)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 887777754
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.42 E-value=0.25 Score=42.88 Aligned_cols=107 Identities=10% Similarity=0.069 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHH-----cCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcC-CCHH
Q 041822 369 EGVCKLYDRMIEGKFVPK---TRTVVMLMKFFCV-----NFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSR-GRWE 439 (500)
Q Consensus 369 ~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~ 439 (500)
..|...+++.++. .|+ ...|..+...|.. -|+.++|.+.|++.++.+..-+..++....+.++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4555566666553 455 4566667767766 388888888888888854222356666777777774 8888
Q ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Q 041822 440 EAFECSKQMLVRRRQ--VSEASYRMLQRYLVQANANEKLEDLDRMIKN 485 (500)
Q Consensus 440 ~A~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 485 (500)
+|.+.+++....... |+....+. +..+++..+.+....
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhHH
Confidence 888888888877665 55443333 244555555554443
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.30 E-value=0.13 Score=37.23 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 248 VTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
..+..+..+|.+.|++++|+..+++..+
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344444444444444444444444443
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.22 E-value=3.3 Score=42.62 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=22.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhC
Q 041822 256 GYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKR 311 (500)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 311 (500)
+|+..|+.....++++.+.... ..++.....+.-++...|+.+.+.++++.+.+.
T Consensus 569 AyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~ 623 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS 623 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC
T ss_pred HhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc
Confidence 3444555544444555554421 112222222222233344444455555544443
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.06 E-value=0.29 Score=37.93 Aligned_cols=81 Identities=10% Similarity=0.039 Sum_probs=55.8
Q ss_pred HHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCC---ChHHHHHHHHHhHhhC-CCCccHHHHHHHHHHHhccccHHHHHH
Q 041822 85 KALEFFKFTLQHPHFTPTPDAFEKTLHILARMR---YFDQAWELMSHVQRTH-PSLLTLKSMSIMLSRISKFQSYEETLE 160 (500)
Q Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (500)
.+.+-|....+.+ +++..+.-.+.-++++.+ ++++++.+++.+.+.. |. .....+-.+.-+|.+.|++++|.+
T Consensus 16 ~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~-~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-chHHHHHHHHHHHHHccCHHHHHH
Confidence 3455555555542 467777777777888877 6668888888888865 31 233445556666788888888888
Q ss_pred HHHHHHHH
Q 041822 161 AFDRMERE 168 (500)
Q Consensus 161 ~~~~~~~~ 168 (500)
.++.+.+.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88888776
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.02 E-value=0.33 Score=37.24 Aligned_cols=105 Identities=7% Similarity=0.021 Sum_probs=60.5
Q ss_pred cCCChhhHHHHHHHHHcCCCH------HHHHHHHHHhhhCCCCCHHh-HHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 041822 174 RKFGSEEFNVLLQAFCTQKEM------KEARSVFVKLLSRFAPNNKT-MNILLL------GFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~------~~A~~~~~~m~~~~~~~~~~-~~~l~~------~~~~~~~~~~a~~~~~~~~~ 240 (500)
.+.|.++|-..+...-+.|+. ++..++|++....+||+... |..-+. .+...++.++|+++|+.+++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 355666777777777766777 77777787777766665311 111111 11223566677777776655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041822 241 RGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACL 279 (500)
Q Consensus 241 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 279 (500)
.+-+- ...|-.....-.+.|+...|.+++.+....+.+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 42222 555555555556667777777777766665533
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.61 E-value=1 Score=33.80 Aligned_cols=139 Identities=13% Similarity=0.092 Sum_probs=74.9
Q ss_pred HcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCC
Q 041822 114 ARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKE 193 (500)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 193 (500)
.-.|..++..++..+.....+ ..-++-.+.-....-+-+-..++++.+- .-.|.. .+|+
T Consensus 18 ildG~v~qGveii~k~~~ssn----i~E~NW~ICNiiD~a~C~y~v~vLd~IG-------kiFDis----------~C~N 76 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSST----KSEYNWFICNLLESIDCRYMFQVLDKIG-------SYFDLD----------KCQN 76 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHSC----HHHHTHHHHHHHHHCCHHHHHHHHHHHG-------GGSCGG----------GCSC
T ss_pred HHhhhHHHHHHHHHHHcCCCC----ccccceeeeecchhhchhHHHHHHHHHh-------hhcCcH----------hhhc
Confidence 345777777777777766432 2223334433333333344444444331 112221 2344
Q ss_pred HHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 194 MKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 194 ~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
.......+-.+-. +...++..+......|+-++..+++.++.. +.+|++...-.+..+|.+.|+..+|.+++.+.
T Consensus 77 lKrVi~C~~~~n~----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 77 LKSVVECGVINNT----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp THHHHHHHHHTTC----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 4444444433321 445556666666677777777777666433 23556666666777777777777777777777
Q ss_pred HHcCC
Q 041822 274 ERVAC 278 (500)
Q Consensus 274 ~~~~~ 278 (500)
-+.|+
T Consensus 152 C~kG~ 156 (172)
T 1wy6_A 152 CKKGE 156 (172)
T ss_dssp HHTTC
T ss_pred HHhhh
Confidence 77664
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.93 E-value=3.1 Score=39.24 Aligned_cols=55 Identities=7% Similarity=0.102 Sum_probs=34.9
Q ss_pred cccHHHHHHHHHHHHHHHhccc-cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 041822 152 FQSYEETLEAFDRMEREIFVGI-RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS 206 (500)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 206 (500)
.|+++.|++.+..+.+....+. ..........++..|.+.|+|+...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3788888888877776542211 122344566777777778888777666655543
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.85 E-value=1.3 Score=40.99 Aligned_cols=72 Identities=10% Similarity=-0.007 Sum_probs=56.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL-----RGFRPSVVTYN 251 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~ 251 (500)
+...++..+...|++++|...+..+....+-+...|..+|.++.+.|+..+|.+.|+.+.+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3456677788888888888888888876777888888888888888888888888887654 28888766543
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.72 E-value=0.77 Score=35.24 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=17.3
Q ss_pred CCHHhHHHHHHHHHcCCCh------HHHHHHHHHhHhh
Q 041822 101 PTPDAFEKTLHILARMRYF------DQAWELMSHVQRT 132 (500)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~ 132 (500)
.|.++|-..+..+-+.|+. ++.+++|++....
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~ 48 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA 48 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc
Confidence 4555555555555555555 5555555555543
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.44 E-value=0.86 Score=45.80 Aligned_cols=132 Identities=8% Similarity=0.028 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCCC-hHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHhc---cccCCC---
Q 041822 106 FEKTLHILARMRY-FDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQ-SYEETLEAFDRMEREIFV---GIRKFG--- 177 (500)
Q Consensus 106 ~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~---~~~~~~--- 177 (500)
...++..+...|+ .+.|.++|+++.+..|... ......++..+...+ +--+|.+++.+..+.... ...+.+
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 4566666766776 5889999999998766432 112223333333333 344566555554332100 001111
Q ss_pred -------hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 178 -------SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEM 238 (500)
Q Consensus 178 -------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 238 (500)
....+.-.+.+...|+++.|+++-++...-.|-+-.+|..|..+|.+.|+++.|+-.++-+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1122333455777899999999999988766778899999999999999999999888776
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.12 E-value=1.7 Score=40.18 Aligned_cols=73 Identities=8% Similarity=-0.122 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 041822 390 VVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLV-----RRRQVSEASYRML 463 (500)
Q Consensus 390 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~l 463 (500)
...++.++...|+.+++...+..+.... +.+...|..+|.+|.+.|+..+|++.|++..+ .|+.|+..+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3445667778888888888888887653 34667888889999999999999888888754 3888887764333
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.97 E-value=5.9 Score=42.53 Aligned_cols=84 Identities=10% Similarity=0.066 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHH
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS----LQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMI 324 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 324 (500)
-|..++..+-+.|.++.+.++-....+..-.-+ ...|..+++++...|++++|...+..+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 356666777777777777766665544321111 12466777777777888877777776665433 244566666
Q ss_pred HHHHhcCCHH
Q 041822 325 SSLIRCRDLN 334 (500)
Q Consensus 325 ~~~~~~g~~~ 334 (500)
..++..|..+
T Consensus 979 ~~lce~~~~~ 988 (1139)
T 4fhn_B 979 NQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHCCHH
T ss_pred HHHHhCCChh
Confidence 6666655543
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.93 E-value=0.00021 Score=66.11 Aligned_cols=245 Identities=9% Similarity=0.038 Sum_probs=133.3
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041822 177 GSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDG 256 (500)
Q Consensus 177 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 256 (500)
.+.+|..|..+..+.+++.+|++.|-+.. |+..|..++.++.+.|.++....++....+. .-+...=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~-----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD-----DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS-----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC-----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 34456666666666666666655443322 5555666666666677766666665433333 1233444566666
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCC--------------------CCCC
Q 041822 257 YCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRN--------------------LKPD 316 (500)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~ 316 (500)
|++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+.... -.-+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 776666655333321 1444445555555666666665555554442211 1235
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041822 317 IGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKF 396 (500)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 396 (500)
+.||-.+-.+|...+.+.-|...--.+.-. ......++..|-..|.+++.+.+++...... +....+|+.|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 678888888888888776665443333221 1112235666778888888888888766322 4557777777777
Q ss_pred HHHcCCHhhHHHHHHHHHHC-CCCC------CHhHHHHHHHHHhcCCCHHHHH
Q 041822 397 FCVNFRVDLGLNLWGYLIDR-GFCP------HGHALDLLVTGLCSRGRWEEAF 442 (500)
Q Consensus 397 ~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~li~~~~~~g~~~~A~ 442 (500)
|++- +.++..+.++..-.+ +++- ....|..++-.|..-..++.|.
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 7665 344333333322111 1110 2234555555566555555444
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.66 E-value=2 Score=43.25 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhcccc-HHHHHHHHHHHHHHHhccccCCChhhH-HHHHHHHHcCCC-HHHHHHHHHHhhh-------CCC
Q 041822 140 KSMSIMLSRISKFQS-YEETLEAFDRMEREIFVGIRKFGSEEF-NVLLQAFCTQKE-MKEARSVFVKLLS-------RFA 209 (500)
Q Consensus 140 ~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~-~~~A~~~~~~m~~-------~~~ 209 (500)
.....++..+...|+ .+.|..+|+++.... +.....+ ..++..+...++ --+|.+++.+..+ ..+
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~-----p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~ 323 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKD-----PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLP 323 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhhC-----CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhc
Confidence 344556666666776 688999999998763 2222222 333444333332 2345555555432 122
Q ss_pred C-CH----------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041822 210 P-NN----------KTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEM 273 (500)
Q Consensus 210 ~-~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (500)
+ +. ...+.=.+.+...|+++-|+.+-++.+... +-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 324 ~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 324 PRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2 11 122222455667899999999999888762 335789999999999999999999999887
No 241
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.54 E-value=0.8 Score=34.11 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=55.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhh---HHHHHHHHHHCCCCC--CHhHHHHHHHHHhcCCCHH
Q 041822 365 SSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVDL---GLNLWGYLIDRGFCP--HGHALDLLVTGLCSRGRWE 439 (500)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~ 439 (500)
......+.+-|.+....| .++..+-..+..++.++.+... +..+++.+.+.+ .| .....-.+.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334455556665555444 2666666667777777765554 777777777654 22 2223335666788888888
Q ss_pred HHHHHHHHHHHcCCCCCH
Q 041822 440 EAFECSKQMLVRRRQVSE 457 (500)
Q Consensus 440 ~A~~~~~~m~~~~~~~~~ 457 (500)
+|.+.++.+.+. .|+.
T Consensus 92 ~A~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 92 KALKYVRGLLQT--EPQN 107 (126)
T ss_dssp HHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHHh--CCCC
Confidence 888888888754 4543
No 242
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.06 E-value=0.00084 Score=62.18 Aligned_cols=247 Identities=10% Similarity=0.118 Sum_probs=174.6
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
...+.+|..|.++....+...+|++.|-++ -|+..|..++.+..+.|.+++-.+.+....+.... ...=+
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke---~~IDt 120 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE---SYVET 120 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS---TTTTH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc---cccHH
Confidence 455677888899988889888888776443 35667889999999999999999998877764211 12235
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh--C--------------
Q 041822 144 IMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS--R-------------- 207 (500)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~-------------- 207 (500)
.++-+|++.++..+-.+.+ ..||..-...+.+-|...|.++.|.-+|..+.. +
T Consensus 121 eLi~ayAk~~rL~elEefl-----------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFI-----------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTT-----------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSS
T ss_pred HHHHHHHhhCcHHHHHHHH-----------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 6888899999876644432 456777778889999999999988888876542 1
Q ss_pred -----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 041822 208 -----FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL 282 (500)
Q Consensus 208 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 282 (500)
-.-+..||..+-.+|...+.+.-|...=-.++-. ......++..|-..|.+++.+.+++.-.... ....
T Consensus 190 VdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHm 263 (624)
T 3lvg_A 190 VDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHM 263 (624)
T ss_dssp TTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCH
T ss_pred HHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhH
Confidence 1347789999999999999987766554344422 1223346777888999999999998876422 3567
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhchhC-CCC------CCHhhHHHHHHHHHhcCCHHHHHH
Q 041822 283 QTITTLIHGAGLVRNIHQARQLFDEMPKR-NLK------PDIGAYNAMISSLIRCRDLNAAME 338 (500)
Q Consensus 283 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~g~~~~a~~ 338 (500)
..|+-|.-.|++- ++++..+.++....+ +++ -....|.-++-.|.+-.++|.|..
T Consensus 264 GmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 264 GMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7788888777775 455555555444332 221 134468888888888888887654
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.79 E-value=3.1 Score=30.96 Aligned_cols=66 Identities=6% Similarity=0.015 Sum_probs=29.5
Q ss_pred CChhhHHHHHHHHHcCCCHHH---HHHHHHHhhhCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 176 FGSEEFNVLLQAFCTQKEMKE---ARSVFVKLLSRFAP--NNKTMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 176 ~~~~~~~~ll~~~~~~~~~~~---A~~~~~~m~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
++..+-..+.-++++..+... ++.++..+.+...| .......|.-++.+.|+++.|.+.++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344444444445555544333 45555554432211 2233334444444555555555555544443
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.62 E-value=3 Score=44.81 Aligned_cols=52 Identities=10% Similarity=-0.021 Sum_probs=35.1
Q ss_pred HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhH
Q 041822 73 LGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQ 130 (500)
Q Consensus 73 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 130 (500)
+...+...+.++.|.++..|... ++..--.+..++...|++++|.+.|++..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44455667777777777666533 33433456677788889999998887764
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.20 E-value=12 Score=35.10 Aligned_cols=52 Identities=4% Similarity=0.143 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHhHhh---CC-CCccHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 041822 117 RYFDQAWELMSHVQRT---HP-SLLTLKSMSIMLSRISKFQSYEETLEAFDRMERE 168 (500)
Q Consensus 117 g~~~~a~~~~~~~~~~---~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 168 (500)
|+++.|.+.+..+.+. .. ...+...+..++..|...|+++...+.+..+.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 7889998888776653 22 2335677888999999999998887777665443
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.66 E-value=1.7 Score=30.58 Aligned_cols=62 Identities=8% Similarity=-0.003 Sum_probs=45.7
Q ss_pred CHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 402 RVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQ 464 (500)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 464 (500)
+.-+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++|+-.+.+- .....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 444566667777777888999999999999999999999999998887652 22344565543
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.22 E-value=12 Score=33.41 Aligned_cols=164 Identities=13% Similarity=0.075 Sum_probs=86.4
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhh----h-CCCCCHHhHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL----S-RFAPNNKTMNI 217 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~----~-~~~~~~~~~~~ 217 (500)
..+...|.+.+++++|++++..-. ..+.+.|+...|-++-.-|+ + +.++|......
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA-------------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~r 99 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVS-------------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGK 99 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHH-------------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 344555777788888887655432 22334455555544443333 2 56677776666
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041822 218 LLLGFKESGDVT-AMEMFYHEMV----LRG--FRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIH 290 (500)
Q Consensus 218 l~~~~~~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 290 (500)
++..+.....-+ .-..+.+.++ +.| ..-|......+...|.+.+++.+|...|- . |-.++...|..++.
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHH
Confidence 666666554321 1122222222 212 23466777778888888888888887773 2 32333455655554
Q ss_pred HHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 291 GAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEME 344 (500)
Q Consensus 291 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 344 (500)
-+...+... ..+...-.+++ -|.-.+++..|..+++...
T Consensus 176 ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 176 EWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 333222211 11222233333 3555677777777666544
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.11 E-value=23 Score=36.64 Aligned_cols=281 Identities=12% Similarity=0.017 Sum_probs=148.1
Q ss_pred HhhcCChHHHHHHHHHhhcCCC-CCCC---HHh--HHHHHHHHHcCCC-hHHHHHHHHHhHhhCCCCccHHHHHHHHHHH
Q 041822 77 FAAHSNGLKALEFFKFTLQHPH-FTPT---PDA--FEKTLHILARMRY-FDQAWELMSHVQRTHPSLLTLKSMSIMLSRI 149 (500)
Q Consensus 77 ~~~~~~~~~A~~~~~~~~~~~~-~~~~---~~~--~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 149 (500)
....|...+++.++...+.... ...+ ... -..+.-.++-.|. -+++.+.+..+...........+...+...+
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~ 500 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCM 500 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 4445555678877766554311 0011 111 2223233333443 2455666666555321111112223344456
Q ss_pred hccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhH--HHHHHHHHhcCC
Q 041822 150 SKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTM--NILLLGFKESGD 227 (500)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~--~~l~~~~~~~~~ 227 (500)
...|+.+-...++..+... ...+..-.-.+.-++.-.|+.+.+..+.+.+.....|....- .++.-+|+..|+
T Consensus 501 vGTgn~~ai~~LL~~~~e~-----~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQET-----QHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHC-----SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred cccCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC
Confidence 6778877777777765532 122222233444445578999999999888875322333222 234557788999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHH
Q 041822 228 VTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNI-HQARQLFD 306 (500)
Q Consensus 228 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~ 306 (500)
.....++++.+.... ..+......+.-+....|+.+.+.++++.+.+.+ .|.+..-..+.-+....|+. .++..++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 988888999888752 2223322223334445788887888887766654 35554444444445555553 57777888
Q ss_pred hchhCCCCCCHhhHHHHHHHHHhcC---------CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCC
Q 041822 307 EMPKRNLKPDIGAYNAMISSLIRCR---------DLNAAMELMDEMEEK-RIGHDNVTYHTMFFGLMKSSG 367 (500)
Q Consensus 307 ~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~ 367 (500)
.+.. .+|..+-...+.++...| ++....+.+...... ...++...-..+..+....|.
T Consensus 654 ~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 654 PLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 8865 345555544554554433 344444444444332 222333444444555555543
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.64 E-value=8.4 Score=28.85 Aligned_cols=75 Identities=9% Similarity=0.053 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHH
Q 041822 383 FVPKTRTVVMLMKFFCVNFR---VDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEAS 459 (500)
Q Consensus 383 ~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 459 (500)
-.|+..+--.+..++.++.+ ...+..+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+.+ +.|+..-
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~Q 113 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 113 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHH
Confidence 35666666667777777754 456778888877755211233444566788889999999999888884 4566543
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.35 E-value=17 Score=32.08 Aligned_cols=164 Identities=13% Similarity=0.016 Sum_probs=83.8
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhh----h-CCCCCHHhHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLL----S-RFAPNNKTMNI 217 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~----~-~~~~~~~~~~~ 217 (500)
..+...|.+.+++++|++++..-.. .+.+.|+...|-++-..++ + +.+++......
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~-------------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~r 97 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL-------------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVAR 97 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH-------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3455557777778877776554322 2334455555444433322 2 46666666666
Q ss_pred HHHHHHhcCCHH-HHHHHHHHH----HHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041822 218 LLLGFKESGDVT-AMEMFYHEM----VLRG--FRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIH 290 (500)
Q Consensus 218 l~~~~~~~~~~~-~a~~~~~~~----~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 290 (500)
++..+.....-+ .-.++++.+ .+.| ..-+......+...|.+.|++.+|...|-. |-.-+...+..++.
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLW 173 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHH
Confidence 666655532111 112222222 2222 223677778888888888888888877741 11013444444443
Q ss_pred HHHcc---CCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041822 291 GAGLV---RNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEME 344 (500)
Q Consensus 291 ~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 344 (500)
-+... |...++ +...-.+ +-.|.-.|++..|..+|+...
T Consensus 174 ~w~~~~~~~~~~e~--------------dlf~~Ra-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 174 DWLCQVDDIEDSTV--------------AEFFSRL-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTCCCHHHH--------------HHHHHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcchH--------------HHHHHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence 33322 222221 1222222 223456678888888777654
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.58 E-value=7.6 Score=27.38 Aligned_cols=47 Identities=17% Similarity=0.341 Sum_probs=25.8
Q ss_pred HHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 300 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
+..+-++.+....+.|++.+..+.+.+|-+.+++..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555555555443
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.42 E-value=3.7 Score=30.71 Aligned_cols=62 Identities=8% Similarity=-0.003 Sum_probs=44.3
Q ss_pred CHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041822 402 RVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEASYRMLQ 464 (500)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 464 (500)
|.-+..+-++.+...++.|++.+....+++|.+.+++..|.++|+-.+.+- .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 333455566666667888899999999999999999999999988887652 23344565543
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.18 E-value=10 Score=35.40 Aligned_cols=61 Identities=11% Similarity=-0.081 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041822 319 AYNAMISSLIRCRDLNAAMELMDEMEEK--RIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMI 379 (500)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (500)
+...+...|.+.|++++|.+.|.++... +...-...+-.+++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4555666666666666666666666553 222223344455566666666666666665553
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.49 E-value=12 Score=28.00 Aligned_cols=47 Identities=17% Similarity=0.341 Sum_probs=27.3
Q ss_pred HHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 300 QARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEK 346 (500)
Q Consensus 300 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 346 (500)
+..+-++.+...++.|++.+..+.+.+|-+.+|+..|.++|+.++.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444455555555666666666666666666666666666655543
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.25 E-value=12 Score=29.27 Aligned_cols=117 Identities=9% Similarity=-0.024 Sum_probs=64.2
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccccCCCh-------hhHHHHHHHHHcCCCHHHHHHHHHHhhh--C-CCCCH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS-------EEFNVLLQAFCTQKEMKEARSVFVKLLS--R-FAPNN 212 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~-~~~~~ 212 (500)
..-+..+...|.++.|.-+.+.+..... .+++. .++..+.+++...|++..|...|++.++ + +.-+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~---~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSN---NNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH---HSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhc---CCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344556677777877777776554421 12221 2567788889999999999999999764 2 22122
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 041822 213 KTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
.+...+. . ...... ......+...--.+..+|.+.|++++|+.+++.+..
T Consensus 101 s~~~~~~-~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 101 KVRPSTG-N---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred Ccccccc-c---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1111110 0 000000 011122444444477788888999999888877543
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.20 E-value=28 Score=31.94 Aligned_cols=163 Identities=8% Similarity=-0.025 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhC---CCCccHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHhccccCCChhhH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTH---PSLLTLKSMSIMLSRISKF-QSYEETLEAFDRMEREIFVGIRKFGSEEF 181 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 181 (500)
...+...|.+.|+.++..+++.....-- +...+......++..+... +..+.-.++..+..+.. ......|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-----~~~~r~f 96 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-----KQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-----HHTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 3455556666666666666655544311 1112233334444444432 22222333333322211 0011122
Q ss_pred ------HHHHHHHHcCCCHHHHHHHHHHhhhC---CCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH
Q 041822 182 ------NVLLQAFCTQKEMKEARSVFVKLLSR---FAPN---NKTMNILLLGFKESGDVTAMEMFYHEMVLR--GFRPSV 247 (500)
Q Consensus 182 ------~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~ 247 (500)
..++..|...|++.+|.+++.++.+. .... ..+|-.-+..|...+++.++...+...... .+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 25677888888888888888887751 1111 234555566777778888777777766543 222333
Q ss_pred HHHHHH----HHHHH-hcCChhHHHHHHHHH
Q 041822 248 VTYNIR----IDGYC-KKGCFGDAMRLFEEM 273 (500)
Q Consensus 248 ~~~~~l----i~~~~-~~g~~~~a~~~~~~m 273 (500)
.....+ ...+. ..++|..|...|-+.
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 322211 12334 567777777766554
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.21 E-value=14 Score=27.98 Aligned_cols=73 Identities=10% Similarity=0.070 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHHcCC---HhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH
Q 041822 384 VPKTRTVVMLMKFFCVNFR---VDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEA 458 (500)
Q Consensus 384 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 458 (500)
.|+..+--.+..++.++.+ ..++..+++.+.+.+..-.....-.+.-++.+.|++++|.+..+.+.+. .|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcH
Confidence 5666666667777777754 4567778888777442212233335666888999999999999888854 56543
No 258
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.26 E-value=17 Score=29.50 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=38.0
Q ss_pred CCHhhHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH
Q 041822 401 FRVDLGLNLWGYLIDRGFCPH-GHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSE 457 (500)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 457 (500)
+......++|..|...|+.-. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 335577777777776655433 445666666777777777777777777777666643
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.44 E-value=11 Score=35.22 Aligned_cols=96 Identities=11% Similarity=-0.097 Sum_probs=54.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhh---CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHH--H
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLS---RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLR---GFRPSVVTY--N 251 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~--~ 251 (500)
+...+...|.+.|+.+.|.+.|.++.. +..--...+-.+++.+...+++..+...+.+.... +-.++.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456677777777777777777777764 23334456666677777777777777776665432 212221110 0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 041822 252 IRIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
.-...+...+++.+|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 011112345677777776666543
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.11 E-value=5.9 Score=33.89 Aligned_cols=52 Identities=6% Similarity=0.102 Sum_probs=24.9
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 189 CTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVL 240 (500)
Q Consensus 189 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (500)
.+.|++++|++....-++..|-|...-..++..+|-.|+++.|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444445554444444444444444444455555555555555444444443
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.89 E-value=7.9 Score=33.10 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=23.3
Q ss_pred hcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhh
Q 041822 79 AHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRT 132 (500)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 132 (500)
+.|++++|++......+.. |-|...-..++..+|-.|++++|.+-++.+.+.
T Consensus 9 ~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444444444444433331 334444444444444444444444444444443
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.79 E-value=34 Score=30.14 Aligned_cols=169 Identities=12% Similarity=0.018 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHH
Q 041822 106 FEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLL 185 (500)
Q Consensus 106 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll 185 (500)
|..+..-|.+.+++++|++++..-.. .+.+.|+...|-++-..+.+.-.....+++......++
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL----------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 33455556677777777777654332 13345555555554332222111111566766777777
Q ss_pred HHHHcCCCHH-HHHHHHHHhhh-----C--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 186 QAFCTQKEMK-EARSVFVKLLS-----R--FAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 186 ~~~~~~~~~~-~A~~~~~~m~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
..+.....-+ .=.++.+.+.+ + -.-++.....+...|.+.|++.+|+..|- .|-.-|...+..++--+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHH
Confidence 7665532211 11233333332 1 22477888899999999999999887653 22111355565555544
Q ss_pred Hhc---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhch
Q 041822 258 CKK---GCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMP 309 (500)
Q Consensus 258 ~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 309 (500)
... |...++-- ..-..++ .|...++...|..+|+...
T Consensus 176 ~~~~~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 443 44433221 1111222 2455677887777776554
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.67 E-value=36 Score=30.31 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=19.3
Q ss_pred HhcCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHccC
Q 041822 258 CKKGCFGDAMRL----FEEMERVACLPSLQTITTLIHGAGLVR 296 (500)
Q Consensus 258 ~~~g~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~~~~~~ 296 (500)
.+.|+...|-++ ++-..+.++++|.....-++..+....
T Consensus 66 l~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 66 LRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 344554443333 244445566666665555555554443
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.42 E-value=22 Score=27.80 Aligned_cols=24 Identities=4% Similarity=0.073 Sum_probs=12.3
Q ss_pred HHHHHHHhccccHHHHHHHHHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRME 166 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~ 166 (500)
..+..++-..|++.+|...|++..
T Consensus 67 ~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 67 VYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHH
Confidence 334444555555555555555543
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=74.79 E-value=24 Score=26.39 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=11.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMER 275 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~ 275 (500)
|.-++.+.|++++|.+..+.+.+
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33444455555555555555444
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.55 E-value=35 Score=27.68 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 041822 333 LNAAMELMDEMEEKRIGHD-NVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP 385 (500)
Q Consensus 333 ~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 385 (500)
..++.++|.-|...|+... ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444555555544433322 2233334444444455555555555544444444
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.86 E-value=12 Score=32.08 Aligned_cols=47 Identities=6% Similarity=-0.166 Sum_probs=21.4
Q ss_pred HHcCCHhhHHHHHHHHHHCCCCCCHhH--HHHHHHHHhcCCCHHHHHHH
Q 041822 398 CVNFRVDLGLNLWGYLIDRGFCPHGHA--LDLLVTGLCSRGRWEEAFEC 444 (500)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~ 444 (500)
+..++.....++.+.+.+.|..++... -.+.+...++.|+.+-+..+
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 238 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 334454444556666666665544321 11223333445665444333
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=71.48 E-value=62 Score=29.65 Aligned_cols=169 Identities=11% Similarity=0.070 Sum_probs=105.9
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCH---HhHHHHHHHHHcC-CChHHHHHHHHHhHh----hCCCCccHHHH
Q 041822 71 NVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTP---DAFEKTLHILARM-RYFDQAWELMSHVQR----THPSLLTLKSM 142 (500)
Q Consensus 71 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~-g~~~~a~~~~~~~~~----~~~~~~~~~~~ 142 (500)
..|...|...|++++..+++.....--+.-+-. .....+++.+... +..+.-.++..+..+ ....-.....-
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~ 102 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLE 102 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999988776532222222 2355777777665 344444444444443 21111111122
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhccc-cCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhh---CCCCCHHhHHHH
Q 041822 143 SIMLSRISKFQSYEETLEAFDRMEREIFVGI-RKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLS---RFAPNNKTMNIL 218 (500)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~~~~l 218 (500)
..++..|...|++.+|.+++.++.+.-.... ...-.++|-.-++.|...+++.++...+..... .+.+++..-..+
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 3688899999999999999999988642100 011123466677888999999999999988874 343444433222
Q ss_pred ----HHHHH-hcCCHHHHHHHHHHHH
Q 041822 219 ----LLGFK-ESGDVTAMEMFYHEMV 239 (500)
Q Consensus 219 ----~~~~~-~~~~~~~a~~~~~~~~ 239 (500)
...+. ..+++..|...|-+..
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 23344 6889988887776653
No 269
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.64 E-value=26 Score=31.57 Aligned_cols=72 Identities=6% Similarity=-0.050 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV--TAMEMFYHEMVLRGFRPSVVTYNIRI 254 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li 254 (500)
...+|.-|...++.++|...++++..... .......++......++. +.+-.++..+.. ++-+.......+.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~-~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~ 130 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM-KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFD 130 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGG-GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchh-HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 58889999999999999999999863111 233344444444444433 344455555553 4333333333333
No 270
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=70.35 E-value=35 Score=26.28 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH
Q 041822 404 DLGLNLWGYLIDRGFCPH-GHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSE 457 (500)
Q Consensus 404 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 457 (500)
+...++|..|...|+.-. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 446778888877765443 455677777777788888888888888777776643
No 271
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=69.04 E-value=94 Score=30.77 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=16.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHh
Q 041822 108 KTLHILARMRYFDQAWELMSHVQR 131 (500)
Q Consensus 108 ~l~~~~~~~g~~~~a~~~~~~~~~ 131 (500)
.++-.|.|+|++++|.++.++...
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~ 180 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKA 180 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh
Confidence 455566777777777777766543
No 272
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=66.57 E-value=25 Score=29.12 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=11.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC
Q 041822 221 GFKESGDVTAMEMFYHEMVLRGF 243 (500)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~g~ 243 (500)
..++.|+.+.+..+++.+.+.|.
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Confidence 33445555555555555444443
No 273
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=65.67 E-value=9.9 Score=31.62 Aligned_cols=14 Identities=7% Similarity=-0.263 Sum_probs=6.2
Q ss_pred hcCCCHHHHHHHHH
Q 041822 433 CSRGRWEEAFECSK 446 (500)
Q Consensus 433 ~~~g~~~~A~~~~~ 446 (500)
.+.|+.+-+.-+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 44455444444433
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.37 E-value=33 Score=24.12 Aligned_cols=15 Identities=13% Similarity=-0.051 Sum_probs=7.5
Q ss_pred ChHHHHHHHHHhhcC
Q 041822 82 NGLKALEFFKFTLQH 96 (500)
Q Consensus 82 ~~~~A~~~~~~~~~~ 96 (500)
..++|..+-+|+...
T Consensus 21 ~HqEA~tIAdwL~~~ 35 (115)
T 2uwj_G 21 CHEEALCIAEWLERL 35 (115)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC
Confidence 444555555555443
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.57 E-value=81 Score=28.39 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCCCC
Q 041822 390 VVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGR--WEEAFECSKQMLVRRRQVS 456 (500)
Q Consensus 390 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~ 456 (500)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 445566666666666666666665421111 12233344444444332 3345556666655555433
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=64.14 E-value=35 Score=24.02 Aligned_cols=16 Identities=6% Similarity=-0.182 Sum_probs=7.9
Q ss_pred CChHHHHHHHHHhhcC
Q 041822 81 SNGLKALEFFKFTLQH 96 (500)
Q Consensus 81 ~~~~~A~~~~~~~~~~ 96 (500)
+..++|..+-+|+...
T Consensus 21 H~HqEA~tIAdwL~~~ 36 (116)
T 2p58_C 21 HYHEEANCIAEWLHLK 36 (116)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhC
Confidence 3445555555555543
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.03 E-value=28 Score=26.78 Aligned_cols=51 Identities=4% Similarity=-0.016 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCC
Q 041822 370 GVCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420 (500)
Q Consensus 370 ~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (500)
++.++|..|...|+--. ...|......+...|++++|.++|+..++.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35566666665555444 4444555555555666666666666666655555
No 278
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=62.49 E-value=35 Score=29.99 Aligned_cols=59 Identities=7% Similarity=0.023 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCH--HHHHHHHHHHHH
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDV--TAMEMFYHEMVL 240 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~ 240 (500)
...++.-|...|+.++|...++++.... -.......++......++. +.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~-~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE-MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG-GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999875311 1222333444444444433 345555566653
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.16 E-value=54 Score=25.58 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH
Q 041822 404 DLGLNLWGYLIDRGFCPH-GHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEA 458 (500)
Q Consensus 404 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 458 (500)
+...++|..|...|+.-. ...|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 446678888888766543 4567777777788888888888888888887777644
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.29 E-value=10 Score=32.57 Aligned_cols=83 Identities=11% Similarity=-0.013 Sum_probs=39.8
Q ss_pred HHHHHHcCCHhhHHHHHHHHHHC-CCCCCH---hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHH
Q 041822 394 MKFFCVNFRVDLGLNLWGYLIDR-GFCPHG---HALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEAS--YRMLQRYL 467 (500)
Q Consensus 394 l~~~~~~~~~~~a~~~~~~~~~~-~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~l~~~~ 467 (500)
+...+..|+.+.. +.+.+. |..++. .-.+.+.. .+..|+.....++++.+.+.|..++... -.+.+...
T Consensus 152 L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A 226 (285)
T 1wdy_A 152 LMDAAEKGHVEVL----KILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226 (285)
T ss_dssp HHHHHHHTCHHHH----HHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHH----HHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 3334556665544 344443 444332 12223333 3445665555667777777776655321 11233344
Q ss_pred HHcCchhHHHHHHH
Q 041822 468 VQANANEKLEDLDR 481 (500)
Q Consensus 468 ~~~~~~~~~~~~~~ 481 (500)
...|..+.+..+.+
T Consensus 227 ~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 227 VEKKHLGLVQRLLE 240 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 45566665555444
No 281
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=59.67 E-value=55 Score=24.83 Aligned_cols=67 Identities=13% Similarity=0.022 Sum_probs=29.7
Q ss_pred CCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041822 210 PNNKTMNILLLGFKESGDV---TAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERV 276 (500)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (500)
|+..+--....++++..+. .++..+++++.+.+..-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4444444444444444433 244445555444321111222223344555555555555555555553
No 282
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=59.17 E-value=69 Score=26.83 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=42.9
Q ss_pred HHHHHcCCCHHHHHHHHHHhhh---CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 185 LQAFCTQKEMKEARSVFVKLLS---RFAP----NNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
++.+....++++|.+++++..+ +.++ +.......++.-.....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 4455666677777776666553 2221 111222223333322223334444444422 33455555566667
Q ss_pred HhcCChhHHHHHHHHHH
Q 041822 258 CKKGCFGDAMRLFEEME 274 (500)
Q Consensus 258 ~~~g~~~~a~~~~~~m~ 274 (500)
.+.|+.++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 77777777777775544
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.06 E-value=34 Score=26.76 Aligned_cols=50 Identities=6% Similarity=-0.017 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCC
Q 041822 371 VCKLYDRMIEGKFVPK-TRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCP 420 (500)
Q Consensus 371 a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (500)
..++|..|...|+--. ...|......+...|++.+|.++|...++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4445555554444433 3334444444444555555555555555544444
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.46 E-value=56 Score=24.24 Aligned_cols=65 Identities=11% Similarity=0.263 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCC
Q 041822 320 YNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG--LEGVCKLYDRMIEGKFVP 385 (500)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p 385 (500)
...++.-|...|+.++|.+.++++...... ......++..++-+.++ .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 345666666666777776666665421110 12223333333433321 344555666665555443
No 285
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.58 E-value=57 Score=25.09 Aligned_cols=65 Identities=11% Similarity=0.263 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCC
Q 041822 320 YNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG--LEGVCKLYDRMIEGKFVP 385 (500)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p 385 (500)
...++.-|...|+.++|...++++...... ......++..++-+.++ .+.+..++..+...++-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 445666666667777776666666421110 12223333334433222 334555666665555443
No 286
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=55.32 E-value=73 Score=27.97 Aligned_cols=24 Identities=13% Similarity=0.393 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 215 MNILLLGFKESGDVTAMEMFYHEM 238 (500)
Q Consensus 215 ~~~l~~~~~~~~~~~~a~~~~~~~ 238 (500)
...++.-|...|+.++|...++++
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 345566666666666666666554
No 287
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=53.09 E-value=39 Score=27.90 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH
Q 041822 404 DLGLNLWGYLIDRGFCPH-GHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSE 457 (500)
Q Consensus 404 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 457 (500)
+...++|..|...|+.-. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 567788888888766543 456777777888888999999988888888777743
No 288
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.46 E-value=31 Score=28.56 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=12.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCC
Q 041822 255 DGYCKKGCFGDAMRLFEEMERVAC 278 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~~~ 278 (500)
...+..|+.+-+..+++.+.+.|.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 334445555555555554444443
No 289
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=49.99 E-value=98 Score=24.94 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=16.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041822 260 KGCFGDAMRLFEEMERVACLPSLQTITTLIH 290 (500)
Q Consensus 260 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 290 (500)
-.+++.|+-++-+|.+.|..|.-..-..++-
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~ 50 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAI 50 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3556666666666666664444333333333
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.01 E-value=83 Score=26.32 Aligned_cols=88 Identities=15% Similarity=0.059 Sum_probs=44.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHH
Q 041822 253 RIDGYCKKGCFGDAMRLFEEMERV--ACLP----SLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISS 326 (500)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 326 (500)
-++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 345566667777777776665431 1111 111122223322333333334444444422 3355666666777
Q ss_pred HHhcCCHHHHHHHHHHH
Q 041822 327 LIRCRDLNAAMELMDEM 343 (500)
Q Consensus 327 ~~~~g~~~~a~~~~~~~ 343 (500)
+.+.|+.++|.++|=+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 77888888888777443
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.64 E-value=86 Score=24.06 Aligned_cols=64 Identities=9% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD--VTAMEMFYHEMVLRGFR 244 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~g~~ 244 (500)
.+.++.-|...|+.++|...++++....--...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 35566777777777777777777642100012223333333333222 34556666666655543
No 292
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=47.94 E-value=15 Score=31.16 Aligned_cols=19 Identities=11% Similarity=0.027 Sum_probs=8.2
Q ss_pred hcCChhHHHHHHHHHHHcC
Q 041822 259 KKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~~ 277 (500)
+.|+.+....+++.+.+.|
T Consensus 14 ~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 3444444444444443333
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.68 E-value=48 Score=27.42 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 041822 334 NAAMELMDEMEEKRIGHDN-VTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVP 385 (500)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 385 (500)
++..++|..|...|+.... ..|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3445555555555443322 334444445555566666666666555555455
No 294
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=47.61 E-value=1.1e+02 Score=24.85 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=34.0
Q ss_pred HhHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHcCC
Q 041822 213 KTMNILLLGFK---ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC-----FGDAMRLFEEMERVAC 278 (500)
Q Consensus 213 ~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~ 278 (500)
..+..+|+++. +..+.+.|.-++.+|++.|-.|.-..-..++-+.-.-|. ...|...++.....|.
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34444455544 346777777777777777766554444444444433332 2233444444444453
No 295
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=47.48 E-value=1.1e+02 Score=24.70 Aligned_cols=31 Identities=6% Similarity=0.021 Sum_probs=15.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041822 261 GCFGDAMRLFEEMERVACLPSLQTITTLIHGA 292 (500)
Q Consensus 261 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 292 (500)
.+++.|+-++-+|.+.| .|.-..-..++-+.
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~As 58 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGY 58 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 55555555555555555 44333333333333
No 296
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.51 E-value=2e+02 Score=30.05 Aligned_cols=48 Identities=8% Similarity=-0.044 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccC
Q 041822 249 TYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSL----QTITTLIHGAGLVR 296 (500)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~ 296 (500)
-|..++..+-+.+.++.+.++-+...+.--.-|. ..|+.++++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5778888888889999888888777653212222 35677777766554
No 297
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=45.34 E-value=70 Score=28.58 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCC
Q 041822 181 FNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD--VTAMEMFYHEMVLRGF 243 (500)
Q Consensus 181 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~g~ 243 (500)
...++.-|...|+.++|...++++.....-...+...+..+ ...++ .+.+..++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~-le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVEST-LERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHCCC
Confidence 67788889999999999999988853100011222222222 22222 2455566666665543
No 298
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=43.03 E-value=1.4e+02 Score=24.53 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=27.8
Q ss_pred CCHHhHHHHHHHHHcCCCh-HHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHH
Q 041822 101 PTPDAFEKTLHILARMRYF-DQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRM 165 (500)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 165 (500)
.+..-+..++..+...+.. ..+..+|+.+-..+....+..-+...+..+......++...+|+.+
T Consensus 82 Is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~ 147 (229)
T 3dd4_A 82 VNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLY 147 (229)
T ss_dssp CCHHHHHHHHHHHSCSSSHHHHHHHHHHTTCSSCCSSCCHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHCCCCCcHHHHHHHHHHcCCCCCCeEeHHHHHHHHHHHcCCChHHHHHHHHHHh
Confidence 4444444444443333222 2233445444443334445444544444444333334444444444
No 299
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=42.86 E-value=1.3e+02 Score=24.26 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=37.5
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHcCCC
Q 041822 215 MNILLLGFK---ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGC-----FGDAMRLFEEMERVACL 279 (500)
Q Consensus 215 ~~~l~~~~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~~ 279 (500)
...+|+++. +..+.+.|.-++.+|++.| .|.-..-..++-+.-.-|. ...|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 334444443 4578888999999999888 6655544555555444443 22344455555555643
No 300
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=42.55 E-value=1.4e+02 Score=24.37 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=37.0
Q ss_pred HHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHhchhCC
Q 041822 251 NIRIDGYCK---KGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRN-----IHQARQLFDEMPKRN 312 (500)
Q Consensus 251 ~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~ 312 (500)
-.+|+++.| -.+++.|+-++-+|.+.|..|.-..-..++-+.-..|. ...|...++.....|
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 105 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVG 105 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 335566544 47888888888888888866665555555555544443 233444444444444
No 301
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.14 E-value=1e+02 Score=22.79 Aligned_cols=63 Identities=10% Similarity=0.184 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 041822 182 NVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGD--VTAMEMFYHEMVLRGFR 244 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~g~~ 244 (500)
+.++.-|...|+.++|.+.++++....--...+...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 5566667677777777777777642100011222333333333322 24555666666655433
No 302
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=41.09 E-value=1.5e+02 Score=25.91 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q 041822 182 NVLLQAFCTQKEMKEARSVFVK 203 (500)
Q Consensus 182 ~~ll~~~~~~~~~~~A~~~~~~ 203 (500)
++.+...++.|+.+-+..+++.
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG 47 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC
Confidence 3444455667777666655543
No 303
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=41.00 E-value=1.4e+02 Score=24.04 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=30.0
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041822 216 NILLLGFK---ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKG 261 (500)
Q Consensus 216 ~~l~~~~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 261 (500)
..+|+++. +..+.+.|.-++.+|++.|-.|.-..-..++-+.-.-|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34455544 45788999999999999887765555555555544333
No 304
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.42 E-value=98 Score=23.05 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=27.7
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcC-CHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCC
Q 041822 378 MIEGKFVPKTRTVVMLMKFFCVNF-RVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGR 437 (500)
Q Consensus 378 ~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 437 (500)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|-
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 4455655554332 2333444343 455566666666665544444443333444444443
No 305
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.29 E-value=1.1e+02 Score=23.22 Aligned_cols=36 Identities=14% Similarity=-0.058 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 041822 435 RGRWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQA 470 (500)
Q Consensus 435 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 470 (500)
.+..-.|.++++.+.+.+...+..|.-.-+..+...
T Consensus 34 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp CSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 333344444444444443333433333333333333
No 306
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=40.24 E-value=78 Score=20.87 Aligned_cols=59 Identities=14% Similarity=0.042 Sum_probs=32.2
Q ss_pred HHHCCCCCCHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCc
Q 041822 413 LIDRGFCPHGHALDLLVTGLCSRG-RWEEAFECSKQMLVRRRQVSEASYRMLQRYLVQANA 472 (500)
Q Consensus 413 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 472 (500)
+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|.
T Consensus 8 l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4455655554433 3445554443 445566666666666555566665555555555554
No 307
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.87 E-value=2.5e+02 Score=26.70 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhh--CCCCCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041822 179 EEFNVLLQAFCTQKEMKEARSVFVKLLS--RFAPNNK---TMNILLLGFKESGDVTAMEMFYHEMVLR 241 (500)
Q Consensus 179 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (500)
..+|.+++.|...+.++.|..+..+..- ...+|.. -+..+...+.-.+++.+|.+.+....+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4578888888888889999888888751 1111111 1233456666778888888887776654
No 308
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=39.68 E-value=97 Score=21.80 Aligned_cols=47 Identities=11% Similarity=0.006 Sum_probs=19.2
Q ss_pred HccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041822 293 GLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEE 345 (500)
Q Consensus 293 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 345 (500)
...|++++|..+.+.+. .||...|-+|.. .+.|.-+++..-+.++..
T Consensus 50 mNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34444444444333222 344444443332 244444444444444433
No 309
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=39.15 E-value=1.7e+02 Score=24.47 Aligned_cols=135 Identities=11% Similarity=0.095 Sum_probs=84.4
Q ss_pred CCCHHhHHHHHHHHHcCC-ChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCCh
Q 041822 100 TPTPDAFEKTLHILARMR-YFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGS 178 (500)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 178 (500)
..+..-+..++..+...+ .-..+..+|..+-..+....+..-+..++..+......++...+|+.+...+ .-..+.
T Consensus 108 ~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~---dG~I~~ 184 (256)
T 2jul_A 108 LVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINK---DGCITK 184 (256)
T ss_dssp SEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSS---SSCBCH
T ss_pred cCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCC---CCcCcH
Confidence 356666666666654333 3356777888776655556676667666666655555666777777664332 135566
Q ss_pred hhHHHHHHHHHc-CC-----------CHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041822 179 EEFNVLLQAFCT-QK-----------EMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEM 238 (500)
Q Consensus 179 ~~~~~ll~~~~~-~~-----------~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 238 (500)
.-+..++..+.. .| .-+.+..+|..+-.. .....++.-++..+.+...+-.+...|+.+
T Consensus 185 ~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d-~dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 185 EEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRN-QDGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCS-TTCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCC-CCCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 666666665531 12 346677888887531 123457778888888888888887777654
No 310
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=39.06 E-value=1e+02 Score=21.78 Aligned_cols=12 Identities=17% Similarity=-0.247 Sum_probs=5.0
Q ss_pred ccCCHHHHHHHH
Q 041822 294 LVRNIHQARQLF 305 (500)
Q Consensus 294 ~~~~~~~a~~~~ 305 (500)
..|++++|..+.
T Consensus 52 NrG~Yq~Al~l~ 63 (116)
T 2p58_C 52 NRGDYASALQQG 63 (116)
T ss_dssp HTTCHHHHHHHH
T ss_pred cchhHHHHHHhc
Confidence 344444444433
No 311
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=37.55 E-value=70 Score=26.22 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=8.8
Q ss_pred hcCCCHHHHHHHHHHHH
Q 041822 433 CSRGRWEEAFECSKQML 449 (500)
Q Consensus 433 ~~~g~~~~A~~~~~~m~ 449 (500)
...|+.+.+.++.+.+.
T Consensus 218 ~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44555555555555544
No 312
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=37.50 E-value=1.1e+02 Score=24.19 Aligned_cols=21 Identities=5% Similarity=-0.129 Sum_probs=8.6
Q ss_pred ccCCHHHHHHHHHhchhCCCC
Q 041822 294 LVRNIHQARQLFDEMPKRNLK 314 (500)
Q Consensus 294 ~~~~~~~a~~~~~~~~~~~~~ 314 (500)
..|+.+.-.++.+.+.+.|..
T Consensus 47 ~~~~~~~~~~iv~~Ll~~Gad 67 (186)
T 3t8k_A 47 RNNNDEARYKISMFLINKGAD 67 (186)
T ss_dssp TCSCHHHHHHHHHHHHHTTCC
T ss_pred HcCCcchHHHHHHHHHHCCCC
Confidence 334443333344444444433
No 313
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.53 E-value=1.1e+02 Score=23.21 Aligned_cols=19 Identities=0% Similarity=-0.312 Sum_probs=8.6
Q ss_pred HcCCHhhHHHHHHHHHHCC
Q 041822 399 VNFRVDLGLNLWGYLIDRG 417 (500)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~ 417 (500)
..+..-.|.++++.+.+.+
T Consensus 38 ~~~~~~sa~ei~~~l~~~~ 56 (150)
T 2xig_A 38 RSGTHLSPEEITHSIRQKD 56 (150)
T ss_dssp HCSSCBCHHHHHHHHHHHS
T ss_pred hCCCCCCHHHHHHHHHHhC
Confidence 3333444555555554433
No 314
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.90 E-value=89 Score=24.68 Aligned_cols=39 Identities=18% Similarity=0.047 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCchhHHHHH
Q 041822 441 AFECSKQMLVRRRQVSEASY--RMLQRYLVQANANEKLEDL 479 (500)
Q Consensus 441 A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~ 479 (500)
-.++++.+.+.|..++.... .+.+......|..+-+..+
T Consensus 157 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 197 (201)
T 3hra_A 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197 (201)
T ss_dssp HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence 34555666666665543221 1223333444555544443
No 315
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=35.80 E-value=1.1e+02 Score=23.33 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=24.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcC-CHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCC
Q 041822 378 MIEGKFVPKTRTVVMLMKFFCVNF-RVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGR 437 (500)
Q Consensus 378 ~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 437 (500)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3444555543322 1233333333 344455555555554433343333333344444443
No 316
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.79 E-value=3e+02 Score=26.26 Aligned_cols=72 Identities=15% Similarity=0.041 Sum_probs=51.7
Q ss_pred CChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHH--hH-HHHHHHHHcCCChHHHHHHHHHhHhhCCC
Q 041822 64 LSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPD--AF-EKTLHILARMRYFDQAWELMSHVQRTHPS 135 (500)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 135 (500)
..-+.+++.+++.|...+.+++|..+..+..--..-.++.. .| -.+.....-.+++.+|.+.+....+..|.
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 35578899999999999999999999998852100011211 22 24566777889999999999988875543
No 317
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=35.76 E-value=71 Score=25.34 Aligned_cols=81 Identities=10% Similarity=0.003 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHCCCCCCHhH---HHHHHHHHhcCCCH-HHHHHHHHHHHH-cCCCCCHHHH--HHHHHHHHHcCchhHH
Q 041822 404 DLGLNLWGYLIDRGFCPHGHA---LDLLVTGLCSRGRW-EEAFECSKQMLV-RRRQVSEASY--RMLQRYLVQANANEKL 476 (500)
Q Consensus 404 ~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~-~~A~~~~~~m~~-~~~~~~~~~~--~~l~~~~~~~~~~~~~ 476 (500)
....++.+.+++.|..++... .++.+...+..|.. ..-..+++-+.+ .|..++.... .+-+....+.|..+.+
T Consensus 91 ~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v 170 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIAL 170 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHH
T ss_pred hhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHH
Confidence 334455666666665554321 10122222222322 234455555665 5655543221 1223334445555554
Q ss_pred HHHHHHHH
Q 041822 477 EDLDRMIK 484 (500)
Q Consensus 477 ~~~~~~~~ 484 (500)
+.+.+.++
T Consensus 171 ~~L~~~~~ 178 (186)
T 3t8k_A 171 KMMEDYIK 178 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 318
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.71 E-value=2.6e+02 Score=25.22 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=15.5
Q ss_pred HHHHHHHHhccccHHHHHHHHHHH
Q 041822 142 MSIMLSRISKFQSYEETLEAFDRM 165 (500)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~ 165 (500)
...++.-|...|+.++|...++++
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 455666666666777776666665
No 319
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=34.61 E-value=2.5e+02 Score=24.97 Aligned_cols=26 Identities=4% Similarity=0.236 Sum_probs=22.4
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHH
Q 041822 141 SMSIMLSRISKFQSYEETLEAFDRME 166 (500)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 166 (500)
....++.-|...|+.++|...++++.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 35778888999999999999999884
No 320
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.27 E-value=16 Score=30.96 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=15.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 041822 220 LGFKESGDVTAMEMFYHEMVLRGFRPS 246 (500)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~~g~~~~ 246 (500)
...++.|+.+....+++.+.+.|..++
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 344456666666666666666554444
No 321
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.22 E-value=1.5e+02 Score=22.47 Aligned_cols=62 Identities=6% Similarity=0.040 Sum_probs=39.8
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041822 341 DEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRV 403 (500)
Q Consensus 341 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 403 (500)
+.+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345566776443 33456666666666777888888887766566777766677777776654
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.98 E-value=2e+02 Score=30.02 Aligned_cols=130 Identities=12% Similarity=0.038 Sum_probs=63.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 041822 323 MISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFR 402 (500)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 402 (500)
++..+...|..+-|.++...+.. +...--.+..+|...|++++|.+.|++.- .|+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-----t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-----SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------
Confidence 45555566666655443322221 33333345566777788888888776643 222211100000
Q ss_pred HhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHc
Q 041822 403 VDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRGRWEEAFECSKQMLVRRRQVSEA----SYRMLQRYLVQA 470 (500)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~ 470 (500)
.+....++... + .-.....-|..++..|-+.+-++-+.++-+...+.--.-|.. .|..+.++....
T Consensus 880 ~~~~~~ll~~~-e-~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 880 LREFQEIAEKY-H-HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp GHHHHHHHHHT-T-TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccCcc-c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 00000111100 0 011123467888888888888888888888777642222222 345555555443
No 323
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=33.49 E-value=1.6e+02 Score=22.64 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=34.9
Q ss_pred CCHHhHHHHHHHHHcC-CChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHHHHHHHH
Q 041822 101 PTPDAFEKTLHILARM-RYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETLEAFDRM 165 (500)
Q Consensus 101 ~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 165 (500)
.+..-+..++..+... ..-.....+|+.+-..+....+..-+..++.........++...+|+.+
T Consensus 36 i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~ 101 (183)
T 1s6c_A 36 VNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLY 101 (183)
T ss_dssp ECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4455555555555433 2345666677776655545566666655555444434444555555554
No 324
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=33.35 E-value=1.3e+02 Score=27.19 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCCHHHH
Q 041822 318 GAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG--LEGVCKLYDRMIEGKFVPKTRTV 390 (500)
Q Consensus 318 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~ 390 (500)
.....+|.-|...|++++|...++++...+.-.....+..+..++ ..++ .+.+-.++..+...++-+.....
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aL-er~~~~re~~~~LL~~L~~~~~ls~~~~~ 86 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSL-DRSDEDKEKASSLISLLKQEGIATSDNFM 86 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 356788999999999999999999886421000122333333333 3332 24455677777766654444333
No 325
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.22 E-value=85 Score=24.81 Aligned_cols=14 Identities=14% Similarity=0.465 Sum_probs=7.1
Q ss_pred HcCCCHHHHHHHHH
Q 041822 189 CTQKEMKEARSVFV 202 (500)
Q Consensus 189 ~~~~~~~~A~~~~~ 202 (500)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 34555555555544
No 326
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=32.35 E-value=1.8e+02 Score=22.87 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=25.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 041822 224 ESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
-.|.+..+..++... + ..+..-|..| +|-+.+++..|+..++.+....
T Consensus 45 yngEY~R~Lf~L~~l---N-T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~k 92 (242)
T 3kae_A 45 LNGEYTRALFHLHKL---N-TCTSKYYESL--CYKKKKDYKKAIKSLESILEGK 92 (242)
T ss_dssp HTTCHHHHHHHHHTC---C-BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcchHhHHHHHHHhc---c-hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcc
Confidence 356666666554321 1 1122222222 4556778888888888777543
No 327
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=32.16 E-value=1.7e+02 Score=24.91 Aligned_cols=15 Identities=7% Similarity=-0.071 Sum_probs=7.5
Q ss_pred HHHHHHHCCCCCCHh
Q 041822 409 LWGYLIDRGFCPHGH 423 (500)
Q Consensus 409 ~~~~~~~~~~~~~~~ 423 (500)
+.+.+++.|..++..
T Consensus 210 ~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 210 MLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHTTSCBCSTTT
T ss_pred HHHHHHHcCCCCCCC
Confidence 444455556555543
No 328
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=31.81 E-value=2.1e+02 Score=30.99 Aligned_cols=179 Identities=9% Similarity=0.073 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCCh-----------------------HHH
Q 041822 66 STLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYF-----------------------DQA 122 (500)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----------------------~~a 122 (500)
...+...-+....+. +.+++-++|+.+.+.. |-....+...++.+-....- .+.
T Consensus 1107 ~e~~rd~~~~~~~k~-~~~~~~~~~~~l~~~~--P~~l~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 1183 (1354)
T 3lxu_X 1107 AESFRDFQCSQIVKC-ELEMAEKIYNDVVAAH--PKHLQANLLLIQNIESNQLKSQLPLTFVNAQKTSPPEAGESADKQK 1183 (1354)
T ss_dssp HHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHHSSCCCCHHHHHHTTSCCCSSCTTHHHHTT
T ss_pred HHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHC--CccHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccc
Q ss_pred H------HHHHHhHhhCCCCccHHHHHHHHHHHhccccHH-HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHc-----
Q 041822 123 W------ELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYE-ETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCT----- 190 (500)
Q Consensus 123 ~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----- 190 (500)
. ..++++.+.........--..++..|+...+.+ +|.++=.+|.+.. +.|+.++++
T Consensus 1184 ~~~~~~~~~~~~ii~~ad~vi~~id~~~l~~~~g~k~d~~~~a~k~k~~m~~~k------------~~l~~al~~k~~al 1251 (1354)
T 3lxu_X 1184 EDQKKVRSALERIVKLADKVIQETDSEALLSYYGLKNDTRADAAKIKTNMDKQK------------NTLIEALSKKGIAV 1251 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHTTTSTTCCSTHHHHCSSSCCHHHHHHHH------------HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCchHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Q ss_pred ----------CCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041822 191 ----------QKEMKEARSVFVKLLS-RFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCK 259 (500)
Q Consensus 191 ----------~~~~~~A~~~~~~m~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 259 (500)
....+...+.|.++.+ -..-|.......+......+++..|.+++.++.+. +|+...|..++..+..
T Consensus 1252 a~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~ 1329 (1354)
T 3lxu_X 1252 AKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGA 1329 (1354)
T ss_dssp HHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Q ss_pred cC
Q 041822 260 KG 261 (500)
Q Consensus 260 ~g 261 (500)
.|
T Consensus 1330 l~ 1331 (1354)
T 3lxu_X 1330 LG 1331 (1354)
T ss_dssp HS
T ss_pred cC
No 329
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.60 E-value=1.6e+02 Score=21.86 Aligned_cols=62 Identities=13% Similarity=0.011 Sum_probs=39.2
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHh
Q 041822 342 EMEEKRIGHDNVTYHTMFFGLMKSS-GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVD 404 (500)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 404 (500)
.+.+.|.+++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3556677655443 33555555555 56678888888887766667667666677776666543
No 330
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.40 E-value=1.4e+02 Score=25.47 Aligned_cols=185 Identities=9% Similarity=0.046 Sum_probs=83.8
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCC
Q 041822 185 LQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVT--YNIRIDGYCKKGC 262 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~ 262 (500)
+...+..|+.+-+..+++.-.. ++...-.+.+...+..|+.+-+..+ .+.|..++... -.+.+...+..|+
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~---~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~L~~A~~~g~ 107 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGAL---KNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTALYYAVDSGN 107 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGG---GSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHhCCCC---CCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcHHHHHHHcCC
Confidence 3344456666655555544222 1111112334455566776655444 34454443211 1123334455666
Q ss_pred hhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHhchhCCCCC-CHhhHHHHHHHHHhcCCHHHHHH
Q 041822 263 FGDAMRLFEEMERVACLPSLQ---TITTLIHGAGLVRNIHQARQLFDEMPKRNLKP-DIGAYNAMISSLIRCRDLNAAME 338 (500)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~ 338 (500)
.+-+..+++ .|..++.. -+.+.+...+..|+.+-+..+++. |..+ +...-.+.+...+..|..+-+.-
T Consensus 108 ~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~g~t~L~~A~~~g~~~~v~~ 179 (285)
T 3kea_A 108 MQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE----IPSTFDLAILLSCIHITIKNGHVDMMIL 179 (285)
T ss_dssp HHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT----SCTTCCCSTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCccccccCCccHHHHHHHcChHHHHHH
Confidence 654444443 34333321 112344445566776655544443 3222 22133444555567788877766
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 041822 339 LMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRT 389 (500)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 389 (500)
+++.-...... +...++..+...+..|+. ++.+.+.+.|..++...
T Consensus 180 Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 180 LLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 66654332221 211122222233345554 34455566677766543
No 331
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.64 E-value=1.6e+02 Score=22.21 Aligned_cols=60 Identities=5% Similarity=-0.086 Sum_probs=35.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041822 342 EMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRV 403 (500)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 403 (500)
.+.+.|.+++..- ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3445566655433 33445555555 556777777777666556666666666666666543
No 332
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=30.50 E-value=4e+02 Score=26.13 Aligned_cols=362 Identities=9% Similarity=0.000 Sum_probs=0.0
Q ss_pred CCCCCChHHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccH
Q 041822 60 QTTPLSSTLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTL 139 (500)
Q Consensus 60 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 139 (500)
...|+.+-.-|..|..-+...... ++-..+.+.++.+.....-...+..+++.+++......+ .....+.
T Consensus 33 ~~~pL~~yl~y~~l~~~l~~~~~~----ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~------~~~p~~~ 102 (618)
T 1qsa_A 33 KDYPLYPYLEYRQITDDLMNQPAV----TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS------PEKPGTT 102 (618)
T ss_dssp TTSTTHHHHHHHHHHHTGGGCCHH----HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC------CSCCSSH
T ss_pred cCCCcHHHHHHHHHHhCcccCCHH----HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhc------cCCCCCH
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHH
Q 041822 140 KSMSIMLSRISKFQSYEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILL 219 (500)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~ 219 (500)
..-.....+....|+..+|....+.+-.. .......+..++..+.+.|........-+-...-...+...-..++
T Consensus 103 ~~~c~~~~A~~~~G~~~~a~~~~~~lW~~-----~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~ 177 (618)
T 1qsa_A 103 EAQCNYYYAKWNTGQSEEAWQGAKELWLT-----GKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLA 177 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHSC-----SSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhC-----CCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--------------HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-
Q 041822 220 LGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNI--------------RIDGYCKKGCFGDAMRLFEEMERVACLPSLQT- 284 (500)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--------------li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~- 284 (500)
... ..+.....+.+..+.+. +++...... .+.-+.+. +.+.|...+....+.....+...
T Consensus 178 ~~l--~~~~~~~a~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~~~~~~~~ 252 (618)
T 1qsa_A 178 GQM--PADYQTIASAIISLANN--PNTVLTFARTTGATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQQLNEDQIQ 252 (618)
T ss_dssp HTC--CGGGHHHHHHHHHHHHC--GGGHHHHHHHSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HhC--CHHHHHHHHHHHHHHhC--hHhHHHHHhccCCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccCCCHHHHH
Q ss_pred --HHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 285 --ITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGL 362 (500)
Q Consensus 285 --~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 362 (500)
+..+.......+...++...+...... ..+.....-.+....+.|+++.|...|+.|...... ...-.--+..++
T Consensus 253 ~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~ 329 (618)
T 1qsa_A 253 ELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLL 329 (618)
T ss_dssp HHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHH
Q ss_pred HHcCChhHHHHHHHHH------------HhCCCCC---------------CHHHHHHHHHHHHHcCCHhhHHHHHHHHHH
Q 041822 363 MKSSGLEGVCKLYDRM------------IEGKFVP---------------KTRTVVMLMKFFCVNFRVDLGLNLWGYLID 415 (500)
Q Consensus 363 ~~~g~~~~a~~~~~~~------------~~~~~~p---------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 415 (500)
...|+.++|..+|..+ .+.|..+ ....-..-+..+...|....|...|..+.+
T Consensus 330 ~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 330 LERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Q ss_pred CCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 041822 416 RGFCPHGHALDLLVTGLCSRGRWEEAFECSKQ 447 (500)
Q Consensus 416 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 447 (500)
. .+......+.......|..+.++.....
T Consensus 410 ~---~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 410 S---KSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp T---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred c---CCHHHHHHHHHHHHHCCChHHHHHHHHH
No 333
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.05 E-value=1.4e+02 Score=26.45 Aligned_cols=23 Identities=9% Similarity=-0.129 Sum_probs=11.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcC
Q 041822 255 DGYCKKGCFGDAMRLFEEMERVA 277 (500)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~~ 277 (500)
...+..|+.+-+..+++.....|
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~ 111 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERG 111 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHhccccC
Confidence 33445566665555555544434
No 334
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.50 E-value=1.1e+02 Score=23.18 Aligned_cols=58 Identities=5% Similarity=-0.089 Sum_probs=25.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCC
Q 041822 377 RMIEGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHALDLLVTGLCSRG 436 (500)
Q Consensus 377 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 436 (500)
.+.+.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|.---++.+...|
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34445555553322 2233333334 4456666666655543334333323333333333
No 335
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.47 E-value=1.8e+02 Score=21.86 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=37.4
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041822 342 EMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRV 403 (500)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 403 (500)
.+.+.|.+++..- ..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3556666655433 334555555566666777887777665555666666666666666543
No 336
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=29.10 E-value=1.6e+02 Score=23.77 Aligned_cols=16 Identities=0% Similarity=0.131 Sum_probs=7.6
Q ss_pred HHHcCCCHHHHHHHHH
Q 041822 187 AFCTQKEMKEARSVFV 202 (500)
Q Consensus 187 ~~~~~~~~~~A~~~~~ 202 (500)
..++.|+.+.+..+++
T Consensus 9 ~A~~~g~~~~v~~Ll~ 24 (232)
T 2rfa_A 9 LAAKENDVQALSKLLK 24 (232)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3344555554444443
No 337
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=29.03 E-value=2e+02 Score=23.27 Aligned_cols=86 Identities=10% Similarity=-0.031 Sum_probs=47.3
Q ss_pred HHHHHcCCHhhHHHHHHHHHHCCCCCCHhH--HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC---------CHHHHHHH
Q 041822 395 KFFCVNFRVDLGLNLWGYLIDRGFCPHGHA--LDLLVTGLCSRGRWEEAFECSKQMLVRRRQV---------SEASYRML 463 (500)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---------~~~~~~~l 463 (500)
...+..|+.+ +.+.+++.|..++... -.+.+...+..|+.+-+..+++.+.+.|..+ |..-. +-
T Consensus 126 ~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~-tp 200 (232)
T 2rfa_A 126 SFAACVGSEE----IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL-TP 200 (232)
T ss_dssp HHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSC-CH
T ss_pred HHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCC-CH
Confidence 3344556654 4444555565544221 1133444567788888877888888776543 22222 23
Q ss_pred HHHHHHcCchhHHHHHHHHHHH
Q 041822 464 QRYLVQANANEKLEDLDRMIKN 485 (500)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~ 485 (500)
+......|..+-++.+.+.=..
T Consensus 201 l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 201 FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCcc
Confidence 4445566777777666654433
No 338
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.08 E-value=1.8e+02 Score=22.52 Aligned_cols=36 Identities=11% Similarity=0.025 Sum_probs=15.5
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHHHC
Q 041822 380 EGKFVPKTRTVVMLMKFFCVNFRVDLGLNLWGYLIDR 416 (500)
Q Consensus 380 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 416 (500)
+.|++++..- ..++..+...+..-.|.++++.+.+.
T Consensus 26 ~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 26 QGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 3444444322 12333334444444555555555543
No 339
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=27.78 E-value=33 Score=21.34 Aligned_cols=25 Identities=4% Similarity=-0.051 Sum_probs=20.4
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHH
Q 041822 80 HSNGLKALEFFKFTLQHPHFTPTPD 104 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~ 104 (500)
.-+++.|+..|..+...+.+||+..
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 5689999999999887767777653
No 340
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.72 E-value=2.3e+02 Score=22.50 Aligned_cols=186 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041822 195 KEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMRLFEEME 274 (500)
Q Consensus 195 ~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (500)
.++...+-...+ .++...-...+..+.+.++.+....+.+.+... +...-...+.++.+.|+.+....+.+.+.
T Consensus 18 ~~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~----~~~vr~~a~~aL~~~~~~~~~~~L~~~l~ 91 (211)
T 3ltm_A 18 PEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGDERAVEPLIKALKDE----DAWVRRAAADALGQIGDERAVEPLIKALK 91 (211)
T ss_dssp GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS----CHHHHHHHHHHHHHHCCGGGHHHHHHHTT
T ss_pred HhHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCC----CHHHHHHHHHHHHhhCCHHHHHHHHHHHc
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 041822 275 RVACLPSLQTITTLIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDNVT 354 (500)
Q Consensus 275 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 354 (500)
. ++...-...+.++.+.++.+....+...+... +..+-...+.++.+.|..+....+.+-+.+. +...
T Consensus 92 ~----~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~----~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~----~~~v 159 (211)
T 3ltm_A 92 D----EDGWVRQSAAVALGQIGDERAVEPLIKALKDE----DWFVRIAAAFALGEIGDERAVEPLIKALKDE----DGWV 159 (211)
T ss_dssp C----SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS----SHHH
T ss_pred C----CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHcCC----CHHH
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 041822 355 YHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFR 402 (500)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 402 (500)
-...+.++.+.+. .++...+..+.+ .++...-...+.++...+.
T Consensus 160 r~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 160 RQSAADALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHhcCC
No 341
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=27.52 E-value=1.4e+02 Score=20.07 Aligned_cols=64 Identities=6% Similarity=0.011 Sum_probs=34.4
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHH
Q 041822 80 HSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMS 143 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (500)
....++..+.|..+-....-..+..-+..++..+...-.-+++..+++.+-..+....+..-+.
T Consensus 25 ~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~ 88 (94)
T 2kz2_A 25 TDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 88 (94)
T ss_dssp CSCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSBCHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHH
Confidence 3444555666666644322234555566666665544455667777776654443445544443
No 342
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=27.45 E-value=3.9e+02 Score=25.05 Aligned_cols=83 Identities=13% Similarity=0.106 Sum_probs=54.3
Q ss_pred cCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhccccHHHHH
Q 041822 80 HSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISKFQSYEETL 159 (500)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 159 (500)
..+++-|+++-.+. |++--...|..-...+...|++++|.++-...++- ...+..+.+.+-..=..-|+..--+
T Consensus 342 l~n~~lA~~lA~R~----~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g--iLRt~~Ti~rFk~vp~~pgq~splL 415 (494)
T 1bpo_A 342 LQNPDLALRMAVRN----NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG--ILRTPDTIRRFQSVPAQPGQTSPLL 415 (494)
T ss_dssp TCCHHHHHHHHHHT----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG--SSCSHHHHHHHTTSCCCTTSCCHHH
T ss_pred cCCHHHHHHHHHhc----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc--cccCHHHHHHHhcCCCCCCCCCHHH
Confidence 36777777665443 77777888888899999999999999988766542 3455555544433333344455555
Q ss_pred HHHHHHHHH
Q 041822 160 EAFDRMERE 168 (500)
Q Consensus 160 ~~~~~~~~~ 168 (500)
..|..+.+.
T Consensus 416 ~YF~~Ll~~ 424 (494)
T 1bpo_A 416 QYFGILLDQ 424 (494)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 555555554
No 343
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.33 E-value=1.6e+02 Score=20.53 Aligned_cols=31 Identities=19% Similarity=0.016 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHhcCC
Q 041822 406 GLNLWGYLIDRGFCPHGHALDLLVTGLCSRG 436 (500)
Q Consensus 406 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 436 (500)
+.++.+++...|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4455555555566666555555555554433
No 344
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.25 E-value=1.8e+02 Score=22.08 Aligned_cols=62 Identities=13% Similarity=0.022 Sum_probs=39.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHh
Q 041822 342 EMEEKRIGHDNVTYHTMFFGLMKSS-GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRVD 404 (500)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 404 (500)
.+.+.|.+++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4556677655443 23455555554 56678888888877766666666666677777766543
No 345
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=26.95 E-value=40 Score=20.95 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041822 264 GDAMRLFEEMERVACLPSLQTITTLIHGA 292 (500)
Q Consensus 264 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 292 (500)
++|.+.|.+|++..-.++..+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555555555433334445555555544
No 346
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.12 E-value=1.3e+02 Score=24.41 Aligned_cols=175 Identities=7% Similarity=0.036 Sum_probs=86.4
Q ss_pred HHHHHHccCCHHHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHH
Q 041822 288 LIHGAGLVRNIHQARQLFDEMPKRNLKPDIGAYNAMISSLIRCRDLNAAMELMDEMEEKRIGHDN---VTYHTMFFGLMK 364 (500)
Q Consensus 288 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~ 364 (500)
.+...+..|+.+....++..-...-...+..-.+.| ...+..|+.+-+..+ .+.|..++. ..++.+. ..+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~-~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTAL-HWACSAGHTEIVEFL----LQLGVPVNDKDDAGWSPLH-IAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHH-HHHHHHTCHHHHHHH----HHTTCCSCCCCTTSCCHHH-HHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHH-HHHHHcCcHHHHHHH----HHhCCCCCCcCCCCCCHHH-HHHH
Confidence 355567789999988888764332112233333333 344566776554444 445544432 2233333 3345
Q ss_pred cCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHhhHHHHHHHHHHCCCCCCHhH--HHHHHHHHhcCCCHH
Q 041822 365 SSGLEGVCKLYDRMIEGKFVPKT---RTVVMLMKFFCVNFRVDLGLNLWGYLIDRGFCPHGHA--LDLLVTGLCSRGRWE 439 (500)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 439 (500)
.|+.+ +++.+.+.|..++. .-. ..+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+
T Consensus 83 ~~~~~----~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 153 (231)
T 3aji_A 83 AGXDE----IVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHE----IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153 (231)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred cCHHH----HHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 56664 34444455554432 112 2334445567765 4445556666554321 112344445567665
Q ss_pred HHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCchhHHHHHHH
Q 041822 440 EAFECSKQMLVRRRQVSEAS--YRMLQRYLVQANANEKLEDLDR 481 (500)
Q Consensus 440 ~A~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~ 481 (500)
-+ +.+.+.|..++... -.+.+......|..+.+..+.+
T Consensus 154 ~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 154 MV----HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp HH----HHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HH----HHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 44 44444566554321 1233444556666666555543
No 347
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=25.65 E-value=2.3e+02 Score=21.77 Aligned_cols=116 Identities=13% Similarity=0.124 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHhHhhCCCCccHHHHHHHHHHHhc-ccc------
Q 041822 82 NGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYFDQAWELMSHVQRTHPSLLTLKSMSIMLSRISK-FQS------ 154 (500)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~------ 154 (500)
.......+|..+-....-..+..-+..++..+......++...+|+.+-..+....+..-+..++..... .|.
T Consensus 54 ~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~ 133 (183)
T 1s6c_A 54 ASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVL 133 (183)
T ss_dssp CHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHTC-------
T ss_pred hHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHHHhccccCcCc
Confidence 3344556666665432123444455555555544444556677777766554455555555544443211 121
Q ss_pred -----HHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 041822 155 -----YEETLEAFDRMEREIFVGIRKFGSEEFNVLLQAFCTQKEMKEARSVFVK 203 (500)
Q Consensus 155 -----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 203 (500)
.+.+..+|+.+... .....+|.-++..+.+...+-.....|+.
T Consensus 134 ~~~~~~~~~~~~f~~~D~d------~dG~i~~~Ef~~~~~~~~~~~~~l~~~d~ 181 (183)
T 1s6c_A 134 KEDTPRQHVDVFFQKMDKN------KDGIVTLDEFLESXQEDDNIMRSLQLFQN 181 (183)
T ss_dssp ----CHHHHHHHHHHHCTT------CSSEECHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCC------CCCcEeHHHHHHHHhcChHHHHHHHHhhc
Confidence 13444444444221 22344566666655555555555555544
No 348
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.58 E-value=1e+02 Score=25.01 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=10.8
Q ss_pred HHHHHcCCCHHHHHHHHHHh
Q 041822 185 LQAFCTQKEMKEARSVFVKL 204 (500)
Q Consensus 185 l~~~~~~~~~~~A~~~~~~m 204 (500)
+...+..|+.+....++..-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 44445556666665555543
No 349
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=24.36 E-value=1.2e+02 Score=24.70 Aligned_cols=19 Identities=11% Similarity=-0.190 Sum_probs=9.2
Q ss_pred HHHHHHcCCHhhHHHHHHH
Q 041822 394 MKFFCVNFRVDLGLNLWGY 412 (500)
Q Consensus 394 l~~~~~~~~~~~a~~~~~~ 412 (500)
+....+.|+.+-+..+++.
T Consensus 214 l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHh
Confidence 3334555665554444443
No 350
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=23.83 E-value=2.3e+02 Score=25.68 Aligned_cols=67 Identities=6% Similarity=0.033 Sum_probs=48.4
Q ss_pred CChhhHHHHHHHHHcCCC--HHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041822 176 FGSEEFNVLLQAFCTQKE--MKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRG 242 (500)
Q Consensus 176 ~~~~~~~~ll~~~~~~~~--~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 242 (500)
.+..+|-.++.-+...++ .++|..+++.+.+|-.++...=..|+..+.+.-..++...+.+-|.+.+
T Consensus 21 ~~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~ 89 (377)
T 3r88_A 21 ASVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHA 89 (377)
T ss_dssp ---CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhC
Confidence 344578888888777665 5788888888888767777777777777777777777777777777654
No 351
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.62 E-value=2.6e+02 Score=21.67 Aligned_cols=16 Identities=0% Similarity=0.100 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHHHC
Q 041822 331 RDLNAAMELMDEMEEK 346 (500)
Q Consensus 331 g~~~~a~~~~~~~~~~ 346 (500)
|++-+|-++|++.-..
T Consensus 46 g~yfeaHEvLEe~W~~ 61 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYN 61 (161)
T ss_dssp TCHHHHHHHHHHHTTT
T ss_pred CCchHHHHHHHHHHHh
Confidence 4555555555444443
No 352
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.37 E-value=3.1e+02 Score=22.48 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccccCCChhhHH--------HHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcC
Q 041822 155 YEETLEAFDRMEREIFVGIRKFGSEEFN--------VLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESG 226 (500)
Q Consensus 155 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~--------~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 226 (500)
.+.|+.+++.+.+. .+.+..... ..+-.|.+.|.+++|.+++++..+..+.+...-.-|+..-.+.+
T Consensus 88 LESAl~v~~~I~~e-----~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTE-----FTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh-----hcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Q ss_pred CHHHHHHHH
Q 041822 227 DVTAMEMFY 235 (500)
Q Consensus 227 ~~~~a~~~~ 235 (500)
......+-|
T Consensus 163 ~~H~~lqnF 171 (235)
T 3bu8_A 163 LAHPVIQNF 171 (235)
T ss_dssp TTSHHHHTC
T ss_pred cccHHHHhc
No 353
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=23.36 E-value=66 Score=23.50 Aligned_cols=51 Identities=8% Similarity=-0.109 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 041822 215 MNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGYCKKGCFGDAMR 268 (500)
Q Consensus 215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 268 (500)
|.-.|...+..++.+-|+.+++.+++.| +...|.+.+-.|...=+++-+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3444555555666666666666666554 55555555555555555554443
No 354
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.83 E-value=1.7e+02 Score=19.17 Aligned_cols=58 Identities=14% Similarity=0.024 Sum_probs=26.0
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 041822 343 MEEKRIGHDNVTYHTMFFGLMKSS-GLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNF 401 (500)
Q Consensus 343 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 401 (500)
+.+.|...+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344454444333 22333333332 33445555555555444444445444555554444
No 355
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=22.27 E-value=4.7e+02 Score=24.97 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 041822 246 SVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPS 281 (500)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 281 (500)
+......|-+.|.+.|++-+|-+++..+-..+...+
T Consensus 216 ~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~~i~ 251 (525)
T 3i5p_A 216 SLKISNILWVYYSRRSKFFESAEILYRLATSNFDIT 251 (525)
T ss_dssp --CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSSCCC
T ss_pred chhHHHHHHHHHHHcccHHHHHHHHHHHHhCCCCCC
Confidence 344556677888899999999999998887754444
No 356
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.90 E-value=1.7e+02 Score=21.44 Aligned_cols=46 Identities=13% Similarity=-0.062 Sum_probs=27.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041822 358 MFFGLMKSSGLEGVCKLYDRMIEGKFVPKTRTVVMLMKFFCVNFRV 403 (500)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 403 (500)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4455555555666777777777665555666655566666655543
No 357
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=21.85 E-value=4.8e+02 Score=24.18 Aligned_cols=54 Identities=9% Similarity=-0.020 Sum_probs=34.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHhCC
Q 041822 329 RCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSG-----LEGVCKLYDRMIEGK 382 (500)
Q Consensus 329 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~ 382 (500)
+.++.+.|..++.+|.+.|..|....-..++.+.-.-|. ...|...++....-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 456788888888888888777665555555556555554 223445555555555
No 358
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.74 E-value=2.5e+02 Score=21.68 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=40.0
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHh
Q 041822 343 MEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEG--KFVPKTRTVVMLMKFFCVNFRVD 404 (500)
Q Consensus 343 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~ 404 (500)
+.+.|.+.+.. -..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-+.
T Consensus 24 L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 24 LRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44557775543 344566666666777788888888766 55566666666677777776543
No 359
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.27 E-value=2.9e+02 Score=21.39 Aligned_cols=53 Identities=6% Similarity=-0.123 Sum_probs=35.1
Q ss_pred HHcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHH-HH-----HHcCCHhhHHHHHHHHHH
Q 041822 363 MKSSGLEGVCKLYDRMIEGKFVP--KTRTVVMLMK-FF-----CVNFRVDLGLNLWGYLID 415 (500)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~ll~-~~-----~~~~~~~~a~~~~~~~~~ 415 (500)
...|++-+|.++++..-...-.+ ....|..||+ .. .+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34588888888888876554445 4555666666 22 345778888888777765
No 360
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=21.24 E-value=3.1e+02 Score=26.38 Aligned_cols=51 Identities=10% Similarity=0.216 Sum_probs=16.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHH
Q 041822 180 EFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAM 231 (500)
Q Consensus 180 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a 231 (500)
--.-++..|.+.|-.+.|.++++.+-.+..-+...+ .-+..|+++|+++.+
T Consensus 518 d~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 518 DIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhhc
Confidence 345556666666666666666666655433344444 444556666665544
No 361
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.98 E-value=74 Score=23.88 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=7.1
Q ss_pred HccCCHHHHHHHHHh
Q 041822 293 GLVRNIHQARQLFDE 307 (500)
Q Consensus 293 ~~~~~~~~a~~~~~~ 307 (500)
+..|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 344455554444444
No 362
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.74 E-value=85 Score=18.99 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=21.3
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhcCCC--HHHHHHHHHHH
Q 041822 407 LNLWGYLIDRGFCPHGHALDLLVTGLCSRGR--WEEAFECSKQM 448 (500)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m 448 (500)
.+.++.+++.|+.++ ....++.+.|. ++.|++++.+|
T Consensus 10 ~qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 10 RQMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 345566666666553 22334444555 77777777776
No 363
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.60 E-value=5.3e+02 Score=24.17 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041822 178 SEEFNVLLQAFCTQKEMKEARSVFVKLLSRFAPNNKTMNILLLGFKESGDVTAMEMFYHEMVLRGFRPSVVTYNIRIDGY 257 (500)
Q Consensus 178 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 257 (500)
...|..-.+.+...|++++|-++--...+|+-.+..|.+.+-.+=...|...-...+|..+.+.| +.+..----+++.-
T Consensus 361 d~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~v 439 (494)
T 1bpo_A 361 EELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPV 439 (494)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHH
Confidence 34455556677788888888888888877777788887776666566677777888888887776 34554444456666
Q ss_pred HhcCChhHHHHHHH
Q 041822 258 CKKGCFGDAMRLFE 271 (500)
Q Consensus 258 ~~~g~~~~a~~~~~ 271 (500)
...|+.+-..+++.
T Consensus 440 L~q~r~~llekWl~ 453 (494)
T 1bpo_A 440 LQQGRKQLLEKWLK 453 (494)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HhccHHHHHHHHHh
Confidence 66677666555554
No 364
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.47 E-value=2e+02 Score=21.50 Aligned_cols=52 Identities=13% Similarity=-0.012 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHcCCCh
Q 041822 67 TLVENVLGRLFAAHSNGLKALEFFKFTLQHPHFTPTPDAFEKTLHILARMRYF 119 (500)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 119 (500)
+.-...++..+...+.+-.|.++++.+.+. +...+..|....+..+...|-+
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHK-GDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCCE
Confidence 344455666666667788899999888775 4456888888888888888754
No 365
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.36 E-value=2.1e+02 Score=24.91 Aligned_cols=49 Identities=6% Similarity=-0.014 Sum_probs=22.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 041822 328 IRCRDLNAAMELMDEMEEKRIGHDNVTYHTMFFGLMKSSGLEGVCKLYDRMIEGKFVPKT 387 (500)
Q Consensus 328 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 387 (500)
++.|+.+-+ +.+.+.|..++..+ . +...++.|+.+ +.+.+.+.|-.||.
T Consensus 281 ~~~g~~~iv----~~Ll~~GAd~n~~~--~-L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 281 VELKLKKIA----ELLCKRGASTDCGD--L-VMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTCHHHH----HHHHTTSCSSTTCC--H-HHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHcCCHHHH----HHHHHCCCCCCCCC--H-HHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 345655433 33345565555443 2 22334455543 34445566655553
No 366
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.20 E-value=1e+02 Score=25.62 Aligned_cols=25 Identities=4% Similarity=-0.035 Sum_probs=13.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC
Q 041822 220 LGFKESGDVTAMEMFYHEMVLRGFR 244 (500)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~~g~~ 244 (500)
...++.|+.+.+..+++.+.+.|..
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3344556666555555555555543
No 367
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.01 E-value=64 Score=27.33 Aligned_cols=14 Identities=21% Similarity=0.206 Sum_probs=5.9
Q ss_pred cCCCHHHHHHHHHH
Q 041822 190 TQKEMKEARSVFVK 203 (500)
Q Consensus 190 ~~~~~~~A~~~~~~ 203 (500)
+.|+.+.+..+++.
T Consensus 22 ~~g~~~~v~~Ll~~ 35 (273)
T 2pnn_A 22 AQSNCQELESLLPF 35 (273)
T ss_dssp HTTCSSTTTTHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 34444444444443
Done!