BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041823
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 129/397 (32%), Positives = 196/397 (49%), Gaps = 50/397 (12%)
Query: 3 PLVLFYTADDEIXXXXXTETLGNFIKQSLSEVFTCFYPLAGRIHKDNNFIECNDEGIPFK 62
P +LFY + + +KQSLS+V T FYPLAGRI+ N+ ++CND G+PF
Sbjct: 41 PFILFYP--NPLDSNLDPAQTSQHLKQSLSKVLTHFYPLAGRINV-NSSVDCNDSGVPFV 97
Query: 63 KARVKCQXXXXXXXXXXXXXXXXXXFDLAEA-------KELPIGIQFNIFDCGGIGLGIC 115
+ARV+ Q A +++P+ ++ + F+CGG +G+
Sbjct: 98 EARVQAQLSQAIQNVVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVN 157
Query: 116 ISHKVGDAQSFFTFVKSWAATARGEKHTVRVEF-VSATLFPPKNILGFEPSTG-ITKQNV 173
+SHK+ D S TF+ +W AT RGE V F ++A FPP + PS + +NV
Sbjct: 158 LSHKIADVLSLATFLNAWTATCRGETEIVLPNFDLAARHFPP---VDNTPSPELVPDENV 214
Query: 174 VTKRFVFTAPKIEEIRSNYTH-SESCTPSRVEALSAFIWSRFVAATKPSHKTSDHRFYTI 232
V KRFVF KI +R+ + SE SRV+ + A+IW + T+ + + + +
Sbjct: 215 VMKRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNK--FVV 272
Query: 233 THAVNLRTKMEPPLPDYSFGNLYRTAVTIPCLDNEDEERYNHIIISQMRDSLRKVDKDYV 292
AVNLR++M PPLP Y+ GN+ + +D E ++ + +I +R SL K + D+
Sbjct: 273 VQAVNLRSRMNPPLPHYAMGNI--ATLLFAAVDAEWDKDFPD-LIGPLRTSLEKTEDDHN 329
Query: 293 KKLQQGDEHLGFIRDRAEKFARGEIVSFSFTSLCRF-----------PLLSF------KN 335
+L +G L + + SFTS CR PL + +N
Sbjct: 330 HELLKGMTCLYELEPQE---------LLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRN 380
Query: 336 LVTFMDTVSGDHGVEAWINLKEEDMAKLEADEKLLSF 372
MDT SGD GVEAW+ + E++MA L + LLS
Sbjct: 381 AALLMDTRSGD-GVEAWLPMAEDEMAMLPVE--LLSL 414
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 119/291 (40%), Gaps = 30/291 (10%)
Query: 27 IKQSLSEVFTCFYPLAGRIHKDNNF---IECNDEGIPFKKAR---VKCQXXXXXXXXXXX 80
+K +LS FYP+AGR+ +D + IECN EG+ F +A V
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELR 120
Query: 81 XXXXXXXFDLAEAKELPIGIQFNIFDCGGIGLGICISHKVGDAQSFFTFVKSWAATARGE 140
+ + + +Q F CGG+ LG+ + H D S F+ SW+ ARG
Sbjct: 121 RLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGL 180
Query: 141 KHTVRVEFVSATLF----PPKNILGF-----EPSTGITKQNVVTKRFVFTAPKI-----E 186
T+ F+ TL PP+ P+ ++ Q + TA I E
Sbjct: 181 DVTLP-PFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTRE 239
Query: 187 EIRSNYTHSE----SCTPSRVEALSAFIWSRFVAATKPSHKTSDHRFYTITHAVNLRTKM 242
+I + S+ + + S E L+ +W R + + Y T R ++
Sbjct: 240 QISALKAKSKEDGNTISYSSYEMLAGHVW-RCACKARGLEVDQGTKLYIATDG---RARL 295
Query: 243 EPPLPDYSFGNLYRTAVTIPCLDNEDEERYNHIIISQMRDSLRKVDKDYVK 293
P LP FGN+ TA I + + E + S++ D+L ++D DY++
Sbjct: 296 RPSLPPGYFGNVIFTATPI-AIAGDLEFKPVWYAASKIHDALARMDNDYLR 345
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 114/291 (39%), Gaps = 30/291 (10%)
Query: 27 IKQSLSEVFTCFYPLAGRIHKDNNF---IECNDEGIPFKKAR---VKCQXXXXXXXXXXX 80
+K +LS FYP+AGR+ +D + IECN EG+ F +A V
Sbjct: 58 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELR 117
Query: 81 XXXXXXXFDLAEAKELPIGIQFNIFDCGGIGLGICISHKVGDAQSFFTFVKSWAATARGE 140
+ + + +Q F CGG+ LG+ + H D S F+ SW+ ARG
Sbjct: 118 RLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGL 177
Query: 141 KHTVRVEFVSATL---------------FPPKNILGFEPSTGITKQ--NVVTKRFVFTAP 183
T+ F+ TL + P L P T + F T
Sbjct: 178 DVTLP-PFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFKLTRE 236
Query: 184 KIEEIRSNYTH-SESCTPSRVEALSAFIWSRFVAATKPSHKTSDHRFYTITHAVNLRTKM 242
+I +++ + + S E L+ +W R + + Y T R ++
Sbjct: 237 QISALKAKSKEDGNTISYSSYEMLAGHVW-RCACKARGLEVDQGTKLYIATDG---RARL 292
Query: 243 EPPLPDYSFGNLYRTAVTIPCLDNEDEERYNHIIISQMRDSLRKVDKDYVK 293
P LP FGN+ TA I + + E + S++ D+L ++D DY++
Sbjct: 293 RPSLPPGYFGNVIFTATPI-AIAGDLEFKPVWYAASKIHDALARMDNDYLR 342
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 118/291 (40%), Gaps = 30/291 (10%)
Query: 27 IKQSLSEVFTCFYPLAGRIHKDNNF---IECNDEGIPFKKAR---VKCQXXXXXXXXXXX 80
+K +LS FYP+AGR+ +D + IECN EG+ F +A V
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELR 120
Query: 81 XXXXXXXFDLAEAKELPIGIQFNIFDCGGIGLGICISHKVGDAQSFFTFVKSWAATARGE 140
+ + + +Q F GG+ LG+ + H D S F+ SW+ ARG
Sbjct: 121 RLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARGL 180
Query: 141 KHTVRVEFVSATLF----PPKNILGF-----EPSTGITKQNVVTKRFVFTAPKI-----E 186
T+ F+ TL PP+ P+ ++ Q + TA I E
Sbjct: 181 DVTLP-PFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTRE 239
Query: 187 EIRSNYTHSE----SCTPSRVEALSAFIWSRFVAATKPSHKTSDHRFYTITHAVNLRTKM 242
+I + S+ + + S E L+ +W R + + Y T R ++
Sbjct: 240 QISALKAKSKEDGNTISYSSYEMLAGHVW-RCACKARGLEVDQGTKLYIATDG---RARL 295
Query: 243 EPPLPDYSFGNLYRTAVTIPCLDNEDEERYNHIIISQMRDSLRKVDKDYVK 293
P LP FGN+ TA I + + E + S++ D+L ++D DY++
Sbjct: 296 RPSLPPGYFGNVIFTATPI-AIAGDLEFKPVWYAASKIHDALARMDNDYLR 345
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 106/284 (37%), Gaps = 72/284 (25%)
Query: 20 TETLGNFIKQSLSEVFTCFYPLAGRI--------HKDNNFIECNDEGIPFKKARVKCQXX 71
TET+ IK SLS FYP G++ + ++E + + F + +
Sbjct: 58 TETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNEL 117
Query: 72 XXXXXXXXXXXXXXXXF-----DLAEAKELPI-GIQFNIFDCGGIGLGICISHKVGDAQS 125
L++ ++P+ +Q +F GI +GI H +GDA +
Sbjct: 118 TGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDAST 177
Query: 126 FFTFVKSWAATARG--------------------------EKHTVRV-------EFVSAT 152
F F+K+W + AR E + R ++V+ +
Sbjct: 178 RFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYVTQS 237
Query: 153 LFPPKNILGFEPSTGITKQNVVTK---RFVFTAPKIEEIRSNYTHSESCTPSRVEALSAF 209
L P + L +T I + V+ + R + P +E + S + +C A+
Sbjct: 238 LAGPSDKLR---ATFILTRAVINQLKDRVLAQLPTLEYVSS---FTVAC---------AY 282
Query: 210 IWSRFVAATKPSHKTSDHRFYTITHAVNLRTKMEPPLPDYSFGN 253
IWS K+ + + ++ R +M+PP+P FGN
Sbjct: 283 IWSCIA-------KSRNDKLQLFGFPIDRRARMKPPIPTAYFGN 319
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 44/237 (18%)
Query: 90 LAEAKELP-------IGIQFNIFDCGGIGLGICISHKVGDAQSFFTFVKSWAATAR--GE 140
LAE K+ P + IQ +F GI +G H GD + FV++WA + G+
Sbjct: 130 LAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGD 189
Query: 141 KHTVRVEFV---SATLFPPKNILG-------------FEPSTGITKQNVVTKRFVFTAPK 184
+ + EF+ ++ N +G + S +T + V F+ T
Sbjct: 190 EQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHXXKXSDVVTPPDKVRGTFIITRHD 249
Query: 185 IEEI-------RSNYTHSESCTPSRVEALSAFIWSRFV---AATKPSHKTSDHRFYTITH 234
I ++ R TH S T A++W+ + AAT + F+
Sbjct: 250 IGKLKNLVLTRRPKLTHVTSFT-----VTCAYVWTCIIKSEAATGEEIDENGXEFFGC-- 302
Query: 235 AVNLRTKMEPPLPDYSFGN-LYRTAVTIPCLDNEDEERYNHIIISQMRDSLRKVDKD 290
A + R + PPLP FGN L +D +E + I + + +++RK KD
Sbjct: 303 AADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFT-IAVELIGEAIRKRXKD 358
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 105/284 (36%), Gaps = 72/284 (25%)
Query: 20 TETLGNFIKQSLSEVFTCFYPLAGRI--------HKDNNFIECNDEGIPFKKARVKCQXX 71
TET+ IK SLS FYP G++ + ++E + + F + +
Sbjct: 58 TETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNEL 117
Query: 72 XXXXXXXXXXXXXXXXF-----DLAEAKELPI-GIQFNIFDCGGIGLGICISHKVGDAQS 125
L++ ++P+ +Q +F GI +GI H +GDA +
Sbjct: 118 TGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDAST 177
Query: 126 FFTFVKSWAATARG--------------------------EKHTVRV-------EFVSAT 152
F F+K+W + AR E + R ++V+ +
Sbjct: 178 RFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYVTQS 237
Query: 153 LFPPKNILGFEPSTGITKQNVVTK---RFVFTAPKIEEIRSNYTHSESCTPSRVEALSAF 209
L P + L +T I + V+ + R + P +E + S + +C A+
Sbjct: 238 LAGPSDKLR---ATFILTRAVINQLKDRVLAQLPTLEYVSS---FTVAC---------AY 282
Query: 210 IWSRFVAATKPSHKTSDHRFYTITHAVNLRTKMEPPLPDYSFGN 253
IWS K+ + + ++ R + +PP+P FGN
Sbjct: 283 IWSCIA-------KSRNDKLQLFGFPIDRRARXKPPIPTAYFGN 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,349,776
Number of Sequences: 62578
Number of extensions: 386022
Number of successful extensions: 795
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 767
Number of HSP's gapped (non-prelim): 16
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)