BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041824
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 197 VLPRVFVKGRYVGGAEEVLRIVEEGWFGELIEGIPIRKLK 236
+PR+FV G ++GGA + R+ +EG L+ ++K K
Sbjct: 102 TVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKKSK 141
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 197 VLPRVFVKGRYVGGAEEVLRIVEEGWFGELIEGIPIRKLK 236
+PR+FV G ++GGA + R+ +EG L+ ++K K
Sbjct: 80 TVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKKSK 119
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 197 VLPRVFVKGRYVGGAEEVLRIVEEGWFGELIEGIPIRKLK 236
+PR+FV G ++GGA + R+ +EG L+ ++K K
Sbjct: 88 TVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKKSK 127
>pdb|3S7V|A Chain A, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|B Chain B, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|C Chain C, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|D Chain D, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|E Chain E, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|F Chain F, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|G Chain G, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|H Chain H, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|I Chain I, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|J Chain J, Unassembled Ki Polyomavirus Vp1 Pentamer
Length = 277
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 56 LGSILPGEPVRAEVINSWELMSGLGESDNNSLRKAKENPSVNSAVIKSVLERFERICPPD 115
+G+ + R + W + S + + ++ S K +E P ++ V S+ E I PPD
Sbjct: 31 IGNTTAAQDGREPTPHYWSISSAIHDKESGSSIKVEETPDADTTVCYSLAE----IAPPD 86
Query: 116 GENKV 120
N+V
Sbjct: 87 IPNQV 91
>pdb|2VSK|A Chain A, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
pdb|2VSK|C Chain C, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
Length = 416
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 18 LGSSALSQHIVSLTSTTYGL-LNVDXXXXXXXXXXQRFTLGSILP-----GEPVRAEVIN 71
+G ++ S +I+ Y L L D R T+GS G+PV +
Sbjct: 212 MGVNSKSHYILRSGLLKYNLSLGGDIILQFIEIADNRLTIGSPSKIYNSLGQPVFYQASY 271
Query: 72 SWELMSGLGESDN-NSLRKAKENPSVNSAVIKSVLERFERICP 113
SW+ M LG+ D + LR N SV S +S RF +CP
Sbjct: 272 SWDTMIKLGDVDTVDPLRVQWRNNSVISRPGQSQCPRFN-VCP 313
>pdb|2X9M|A Chain A, Hendra Virus Attachment Glycoprotein
pdb|2X9M|B Chain B, Hendra Virus Attachment Glycoprotein
pdb|2X9M|C Chain C, Hendra Virus Attachment Glycoprotein
pdb|2X9M|D Chain D, Hendra Virus Attachment Glycoprotein
Length = 420
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 18 LGSSALSQHIVSLTSTTYGL-LNVDXXXXXXXXXXQRFTLGSILP-----GEPVRAEVIN 71
+G ++ S +I+ Y L L D R T+GS G+PV +
Sbjct: 215 MGVNSKSHYILRSGLLKYNLSLGGDIILQFIEIADNRLTIGSPSKIYNSLGQPVFYQASY 274
Query: 72 SWELMSGLGESDN-NSLRKAKENPSVNSAVIKSVLERFERICP 113
SW+ M LG+ D + LR N SV S +S RF +CP
Sbjct: 275 SWDTMIKLGDVDTVDPLRVQWRNNSVISRPGQSQCPRFN-VCP 316
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 196 PVLPRVFVKGRYVGGAEEVLRIVEEGWFGELIEGIPIR 233
P +P+V++ G +VGG + +L++ + G E ++ + I
Sbjct: 75 PTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLGIH 112
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 222 WFGELIEGIPIRKLKGVCQGC 242
W G +I GIP++ + VCQ C
Sbjct: 180 WSGAMIGGIPLQNMCQVCQKC 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,143,640
Number of Sequences: 62578
Number of extensions: 256253
Number of successful extensions: 574
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 14
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)