Query 041824
Match_columns 289
No_of_seqs 299 out of 1454
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 11:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2824 Glutaredoxin-related p 100.0 8.5E-68 1.8E-72 489.2 16.9 236 26-289 1-280 (281)
2 cd03031 GRX_GRX_like Glutaredo 100.0 1.9E-51 4.1E-56 352.3 17.3 147 119-285 1-147 (147)
3 cd03030 GRX_SH3BGR Glutaredoxi 99.9 3.6E-24 7.8E-29 170.7 10.2 90 120-228 2-91 (92)
4 TIGR00365 monothiol glutaredox 99.9 2.5E-21 5.4E-26 154.5 11.4 89 115-227 9-97 (97)
5 TIGR02189 GlrX-like_plant Glut 99.9 2.3E-21 5E-26 155.2 10.5 87 116-231 6-95 (99)
6 PHA03050 glutaredoxin; Provisi 99.8 8E-21 1.7E-25 155.0 11.2 88 116-232 11-104 (108)
7 PRK10824 glutaredoxin-4; Provi 99.8 6E-21 1.3E-25 158.1 10.4 92 116-231 13-104 (115)
8 PRK10638 glutaredoxin 3; Provi 99.8 6.5E-20 1.4E-24 140.6 11.4 83 117-228 1-83 (83)
9 cd03028 GRX_PICOT_like Glutare 99.8 4.5E-20 9.8E-25 144.5 10.3 85 116-224 6-90 (90)
10 TIGR02181 GRX_bact Glutaredoxi 99.8 6.6E-20 1.4E-24 138.3 10.1 79 120-227 1-79 (79)
11 cd03418 GRX_GRXb_1_3_like Glut 99.8 2E-18 4.3E-23 128.0 10.8 75 119-221 1-75 (75)
12 cd03027 GRX_DEP Glutaredoxin ( 99.8 2.4E-18 5.2E-23 128.6 9.6 73 118-219 1-73 (73)
13 PTZ00062 glutaredoxin; Provisi 99.8 5.3E-18 1.2E-22 152.6 11.1 91 115-229 110-200 (204)
14 KOG1752 Glutaredoxin and relat 99.7 6.8E-18 1.5E-22 137.8 9.8 91 115-231 11-101 (104)
15 TIGR02180 GRX_euk Glutaredoxin 99.7 4.4E-17 9.5E-22 122.2 9.8 79 120-227 1-84 (84)
16 COG0695 GrxC Glutaredoxin and 99.7 6.7E-17 1.5E-21 125.1 8.4 76 119-223 2-79 (80)
17 cd03419 GRX_GRXh_1_2_like Glut 99.7 1.3E-16 2.9E-21 119.6 9.4 79 119-226 1-82 (82)
18 cd03029 GRX_hybridPRX5 Glutare 99.7 1.9E-16 4.1E-21 117.8 9.6 70 119-218 2-71 (72)
19 PF04908 SH3BGR: SH3-binding, 99.7 1.3E-16 2.9E-21 129.2 8.8 96 119-229 2-98 (99)
20 TIGR02190 GlrX-dom Glutaredoxi 99.7 5.4E-16 1.2E-20 118.2 10.2 74 115-218 5-78 (79)
21 cd02066 GRX_family Glutaredoxi 99.7 7.1E-16 1.5E-20 110.3 10.2 72 119-219 1-72 (72)
22 PRK11200 grxA glutaredoxin 1; 99.7 7.8E-16 1.7E-20 118.3 10.5 75 119-220 2-81 (85)
23 TIGR02183 GRXA Glutaredoxin, G 99.6 8.2E-16 1.8E-20 119.5 9.8 75 120-221 2-81 (86)
24 COG0278 Glutaredoxin-related p 99.6 6.9E-16 1.5E-20 125.5 9.5 92 115-230 12-104 (105)
25 PF00462 Glutaredoxin: Glutare 99.6 1.2E-14 2.5E-19 104.8 8.5 60 120-208 1-60 (60)
26 PRK12759 bifunctional gluaredo 99.6 1.9E-14 4E-19 140.9 11.1 93 117-232 1-93 (410)
27 KOG0911 Glutaredoxin-related p 99.5 1.4E-13 3E-18 125.6 9.8 92 115-230 136-227 (227)
28 PRK10329 glutaredoxin-like pro 99.4 1.2E-12 2.5E-17 101.5 9.8 65 119-213 2-66 (81)
29 TIGR02194 GlrX_NrdH Glutaredox 99.4 7.8E-13 1.7E-17 98.8 7.8 64 120-213 1-65 (72)
30 TIGR02196 GlrX_YruB Glutaredox 99.1 5.1E-10 1.1E-14 80.5 9.4 66 119-213 1-66 (74)
31 cd02976 NrdH NrdH-redoxin (Nrd 99.1 7.9E-10 1.7E-14 79.4 8.8 66 119-213 1-66 (73)
32 TIGR02200 GlrX_actino Glutared 98.9 2.1E-08 4.7E-13 73.6 9.7 65 119-212 1-67 (77)
33 KOG4023 Uncharacterized conser 98.8 1.1E-08 2.3E-13 83.6 7.0 100 119-233 3-102 (108)
34 cd02973 TRX_GRX_like Thioredox 98.7 6.8E-08 1.5E-12 70.2 6.2 58 119-209 2-64 (67)
35 cd03041 GST_N_2GST_N GST_N fam 98.5 8.2E-07 1.8E-11 66.9 9.3 72 120-220 2-75 (77)
36 cd03040 GST_N_mPGES2 GST_N fam 98.4 2.4E-06 5.1E-11 63.6 9.7 69 119-219 1-73 (77)
37 cd00570 GST_N_family Glutathio 98.3 1.8E-06 3.9E-11 60.1 6.7 68 121-217 2-69 (71)
38 cd03037 GST_N_GRX2 GST_N famil 98.3 3.6E-06 7.8E-11 61.8 8.2 68 121-219 2-70 (71)
39 cd03036 ArsC_like Arsenate Red 98.3 1.2E-06 2.5E-11 71.4 5.3 47 120-172 1-47 (111)
40 cd02977 ArsC_family Arsenate R 98.3 1.1E-06 2.4E-11 70.1 5.0 48 120-173 1-48 (105)
41 cd03055 GST_N_Omega GST_N fami 98.2 1.3E-05 2.7E-10 62.2 8.5 75 114-218 13-88 (89)
42 PRK01655 spxA transcriptional 98.2 4.7E-06 1E-10 70.1 6.3 46 120-171 2-47 (131)
43 cd03059 GST_N_SspA GST_N famil 98.1 2E-05 4.4E-10 57.5 8.1 70 120-219 1-70 (73)
44 TIGR01617 arsC_related transcr 98.0 1.1E-05 2.4E-10 66.0 6.1 47 120-172 1-47 (117)
45 cd03032 ArsC_Spx Arsenate Redu 98.0 1.6E-05 3.4E-10 65.0 6.4 46 120-171 2-47 (115)
46 cd03060 GST_N_Omega_like GST_N 97.9 5.7E-05 1.2E-09 55.7 7.7 66 121-216 2-68 (71)
47 PRK12559 transcriptional regul 97.9 2E-05 4.4E-10 66.5 5.9 46 120-171 2-47 (131)
48 cd03051 GST_N_GTT2_like GST_N 97.9 3.8E-05 8.1E-10 55.6 6.5 68 121-217 2-72 (74)
49 PRK13344 spxA transcriptional 97.9 2.1E-05 4.6E-10 66.4 5.9 46 120-171 2-47 (132)
50 cd03035 ArsC_Yffb Arsenate Red 97.9 2.2E-05 4.7E-10 63.8 5.3 46 120-171 1-46 (105)
51 PF13417 GST_N_3: Glutathione 97.9 7.6E-05 1.6E-09 55.8 7.6 68 122-219 1-68 (75)
52 cd03045 GST_N_Delta_Epsilon GS 97.8 9.4E-05 2E-09 54.2 7.3 70 120-218 1-72 (74)
53 cd03033 ArsC_15kD Arsenate Red 97.8 4.7E-05 1E-09 62.8 5.6 47 119-171 1-47 (113)
54 PF05768 DUF836: Glutaredoxin- 97.7 0.00033 7.1E-09 53.8 9.0 53 119-205 1-57 (81)
55 TIGR00411 redox_disulf_1 small 97.7 0.00021 4.6E-09 52.9 7.5 36 119-160 2-43 (82)
56 cd03056 GST_N_4 GST_N family, 97.7 0.00026 5.6E-09 51.3 7.5 68 121-217 2-71 (73)
57 cd03054 GST_N_Metaxin GST_N fa 97.3 0.0019 4E-08 47.5 8.7 62 128-220 10-71 (72)
58 COG1393 ArsC Arsenate reductas 97.3 0.00041 8.8E-09 57.9 5.4 47 119-171 2-48 (117)
59 cd03058 GST_N_Tau GST_N family 97.3 0.0018 3.9E-08 47.8 7.9 71 120-219 1-71 (74)
60 cd03034 ArsC_ArsC Arsenate Red 97.3 0.00055 1.2E-08 55.9 5.4 46 120-171 1-46 (112)
61 PHA02125 thioredoxin-like prot 97.2 0.0012 2.6E-08 49.7 6.8 42 120-171 2-43 (75)
62 cd02975 PfPDO_like_N Pyrococcu 97.2 0.0024 5.2E-08 51.8 9.1 59 101-171 7-72 (113)
63 cd03053 GST_N_Phi GST_N family 97.2 0.0023 5E-08 47.1 8.2 71 120-219 2-74 (76)
64 TIGR00014 arsC arsenate reduct 97.2 0.00058 1.3E-08 56.0 5.4 46 120-171 1-46 (114)
65 PRK10026 arsenate reductase; P 97.2 0.00066 1.4E-08 58.5 5.8 48 118-171 2-49 (141)
66 KOG3029 Glutathione S-transfer 97.2 0.0014 2.9E-08 63.0 8.2 84 118-233 89-178 (370)
67 cd03026 AhpF_NTD_C TRX-GRX-lik 97.2 0.0011 2.3E-08 52.3 6.3 61 116-209 12-77 (89)
68 cd03052 GST_N_GDAP1 GST_N fami 97.1 0.0021 4.5E-08 48.3 7.0 69 120-217 1-71 (73)
69 PRK10853 putative reductase; P 97.1 0.0008 1.7E-08 55.9 5.2 46 120-171 2-47 (118)
70 TIGR01616 nitro_assoc nitrogen 97.1 0.00089 1.9E-08 56.4 5.4 46 119-170 2-47 (126)
71 cd03061 GST_N_CLIC GST_N famil 97.1 0.0069 1.5E-07 48.5 10.0 78 119-220 5-84 (91)
72 cd03042 GST_N_Zeta GST_N famil 97.0 0.0026 5.6E-08 46.1 6.7 68 121-217 2-71 (73)
73 TIGR00412 redox_disulf_2 small 97.0 0.0021 4.6E-08 48.7 6.4 31 120-157 3-37 (76)
74 PF13192 Thioredoxin_3: Thiore 97.0 0.005 1.1E-07 46.5 7.8 55 120-209 3-63 (76)
75 cd03076 GST_N_Pi GST_N family, 96.9 0.0074 1.6E-07 44.8 8.0 69 120-218 2-70 (73)
76 cd03039 GST_N_Sigma_like GST_N 96.8 0.0064 1.4E-07 44.6 7.1 68 121-217 2-69 (72)
77 cd03049 GST_N_3 GST_N family, 96.8 0.0056 1.2E-07 44.9 6.7 67 121-217 2-71 (73)
78 cd03048 GST_N_Ure2p_like GST_N 96.8 0.0079 1.7E-07 45.1 7.6 70 120-219 2-76 (81)
79 COG4545 Glutaredoxin-related p 96.8 0.0039 8.5E-08 49.2 5.9 35 119-159 3-37 (85)
80 PRK10387 glutaredoxin 2; Provi 96.8 0.0068 1.5E-07 52.5 8.1 70 120-220 1-71 (210)
81 TIGR02182 GRXB Glutaredoxin, G 96.7 0.0071 1.5E-07 53.6 7.6 68 122-220 2-70 (209)
82 PF03960 ArsC: ArsC family; I 96.5 0.007 1.5E-07 48.9 5.8 43 123-171 1-43 (110)
83 PLN03165 chaperone protein dna 96.4 0.003 6.5E-08 52.7 3.4 54 235-289 40-93 (111)
84 TIGR01295 PedC_BrcD bacterioci 96.3 0.035 7.6E-07 45.9 9.2 38 117-160 24-65 (122)
85 cd03080 GST_N_Metaxin_like GST 96.3 0.037 8.1E-07 41.1 8.4 69 120-219 2-71 (75)
86 cd03050 GST_N_Theta GST_N fami 96.2 0.034 7.3E-07 41.1 7.9 71 120-219 1-73 (76)
87 cd03038 GST_N_etherase_LigE GS 96.2 0.015 3.2E-07 44.0 6.0 75 121-219 2-80 (84)
88 cd01659 TRX_superfamily Thiore 96.2 0.02 4.3E-07 37.2 5.8 40 120-165 1-45 (69)
89 cd03043 GST_N_1 GST_N family, 96.0 0.045 9.8E-07 40.7 7.8 66 129-217 5-71 (73)
90 PRK09481 sspA stringent starva 96.0 0.039 8.4E-07 48.6 8.4 71 118-218 9-79 (211)
91 cd03044 GST_N_EF1Bgamma GST_N 96.0 0.036 7.8E-07 41.1 7.0 69 121-218 2-72 (75)
92 cd02949 TRX_NTR TRX domain, no 95.7 0.058 1.2E-06 41.8 7.6 36 120-161 17-58 (97)
93 cd02947 TRX_family TRX family; 95.7 0.047 1E-06 39.4 6.6 37 120-162 14-55 (93)
94 cd03046 GST_N_GTT1_like GST_N 95.7 0.053 1.2E-06 39.6 6.8 69 121-219 2-72 (76)
95 TIGR00862 O-ClC intracellular 95.6 0.096 2.1E-06 48.4 9.7 77 120-220 3-81 (236)
96 PF13409 GST_N_2: Glutathione 95.6 0.032 7E-07 41.3 5.3 65 133-220 1-69 (70)
97 cd02953 DsbDgamma DsbD gamma f 95.4 0.057 1.2E-06 42.1 6.6 48 119-172 14-70 (104)
98 cd03057 GST_N_Beta GST_N famil 95.4 0.08 1.7E-06 39.1 7.1 68 121-218 2-72 (77)
99 cd03047 GST_N_2 GST_N family, 95.3 0.1 2.2E-06 38.3 7.3 68 121-217 2-71 (73)
100 TIGR02187 GlrX_arch Glutaredox 95.3 0.048 1E-06 48.7 6.5 39 117-161 134-177 (215)
101 TIGR02187 GlrX_arch Glutaredox 94.9 0.23 4.9E-06 44.4 9.7 50 115-172 18-75 (215)
102 TIGR03140 AhpF alkyl hydropero 94.9 0.026 5.6E-07 56.8 4.0 61 116-209 117-182 (515)
103 PRK15317 alkyl hydroperoxide r 94.6 0.036 7.8E-07 55.7 4.1 61 116-209 116-181 (517)
104 PHA02278 thioredoxin-like prot 94.5 0.24 5.3E-06 39.9 7.9 50 117-171 14-69 (103)
105 PRK15113 glutathione S-transfe 93.9 0.35 7.5E-06 42.6 8.4 73 119-218 5-79 (214)
106 PTZ00051 thioredoxin; Provisio 93.8 0.33 7.2E-06 36.9 7.2 35 120-160 22-61 (98)
107 TIGR03143 AhpF_homolog putativ 93.6 0.23 5.1E-06 50.6 7.8 59 116-207 476-539 (555)
108 TIGR01262 maiA maleylacetoacet 93.6 0.16 3.5E-06 43.9 5.7 69 122-219 2-73 (210)
109 PLN02473 glutathione S-transfe 93.3 0.35 7.5E-06 42.2 7.3 71 120-219 3-75 (214)
110 PF00085 Thioredoxin: Thioredo 93.2 1.1 2.4E-05 33.7 9.1 28 133-160 28-61 (103)
111 PLN02817 glutathione dehydroge 93.0 0.34 7.5E-06 45.3 7.3 63 133-219 72-134 (265)
112 cd02989 Phd_like_TxnDC9 Phosdu 93.0 0.49 1.1E-05 38.3 7.3 39 118-161 23-66 (113)
113 cd03077 GST_N_Alpha GST_N fami 93.0 0.82 1.8E-05 34.5 8.1 71 120-218 2-72 (79)
114 cd02957 Phd_like Phosducin (Ph 92.9 0.32 7E-06 38.9 6.1 33 120-158 28-65 (113)
115 KOG0406 Glutathione S-transfer 92.6 0.79 1.7E-05 42.8 9.0 75 118-222 8-83 (231)
116 cd02985 TRX_CDSP32 TRX family, 92.6 0.88 1.9E-05 35.8 8.1 36 119-160 18-58 (103)
117 cd02951 SoxW SoxW family; SoxW 92.6 0.62 1.3E-05 37.5 7.3 35 119-159 17-60 (125)
118 TIGR01126 pdi_dom protein disu 92.5 0.69 1.5E-05 34.8 7.2 39 116-160 13-59 (102)
119 cd02954 DIM1 Dim1 family; Dim1 92.5 0.55 1.2E-05 39.1 7.1 43 120-172 18-66 (114)
120 TIGR01068 thioredoxin thioredo 92.4 1.3 2.8E-05 33.1 8.5 36 120-161 18-59 (101)
121 PLN02378 glutathione S-transfe 92.4 0.57 1.2E-05 41.5 7.5 64 132-219 18-81 (213)
122 cd02994 PDI_a_TMX PDIa family, 92.3 1.1 2.4E-05 34.4 8.2 37 119-161 19-62 (101)
123 PRK10877 protein disulfide iso 92.2 0.83 1.8E-05 41.9 8.5 37 114-156 105-144 (232)
124 PRK09381 trxA thioredoxin; Pro 91.8 0.72 1.6E-05 36.0 6.7 38 118-161 23-66 (109)
125 COG3019 Predicted metal-bindin 91.0 1.6 3.4E-05 38.3 8.4 78 116-222 24-104 (149)
126 COG0484 DnaJ DnaJ-class molecu 90.4 0.18 3.8E-06 50.0 2.4 54 236-289 142-204 (371)
127 PF06953 ArsD: Arsenical resis 90.4 0.66 1.4E-05 39.3 5.5 81 117-217 1-94 (123)
128 cd02948 TRX_NDPK TRX domain, T 90.3 2 4.3E-05 33.7 7.9 33 119-157 20-59 (102)
129 cd02984 TRX_PICOT TRX domain, 90.2 1.9 4.1E-05 32.5 7.5 36 119-160 17-58 (97)
130 PF00684 DnaJ_CXXCXGXG: DnaJ c 90.1 0.44 9.6E-06 35.5 3.8 44 245-288 13-62 (66)
131 cd02956 ybbN ybbN protein fami 90.1 1.8 4E-05 32.7 7.3 35 120-160 16-56 (96)
132 KOG0910 Thioredoxin-like prote 89.9 0.39 8.4E-06 42.2 3.8 50 107-162 52-107 (150)
133 PF11009 DUF2847: Protein of u 89.6 3.1 6.8E-05 34.4 8.8 66 117-209 19-92 (105)
134 PF13098 Thioredoxin_2: Thiore 89.4 1.8 3.9E-05 33.6 7.0 24 116-145 5-28 (112)
135 PRK10357 putative glutathione 89.2 1.2 2.6E-05 38.4 6.4 32 121-158 2-33 (202)
136 cd03079 GST_N_Metaxin2 GST_N f 88.9 1.2 2.6E-05 34.4 5.5 55 135-219 18-72 (74)
137 cd03020 DsbA_DsbC_DsbG DsbA fa 88.9 2.3 5E-05 37.2 8.0 38 114-157 75-114 (197)
138 cd02962 TMX2 TMX2 family; comp 88.8 1.6 3.4E-05 37.9 6.8 38 120-163 51-95 (152)
139 cd02961 PDI_a_family Protein D 88.7 2 4.3E-05 31.6 6.4 36 118-159 17-60 (101)
140 PLN02395 glutathione S-transfe 88.5 2.2 4.8E-05 37.1 7.6 71 120-220 3-75 (215)
141 cd03004 PDI_a_ERdj5_C PDIa fam 88.2 2.8 6.1E-05 32.3 7.3 37 118-160 21-63 (104)
142 PRK10767 chaperone protein Dna 88.0 0.43 9.4E-06 46.5 3.1 65 223-289 126-202 (371)
143 PRK13972 GSH-dependent disulfi 87.8 2.6 5.6E-05 36.9 7.7 43 120-169 2-46 (215)
144 cd02972 DsbA_family DsbA famil 87.8 1.7 3.7E-05 31.7 5.6 34 120-159 1-40 (98)
145 cd02959 ERp19 Endoplasmic reti 87.7 1.3 2.8E-05 36.3 5.3 35 120-160 23-63 (117)
146 cd03078 GST_N_Metaxin1_like GS 87.7 6.1 0.00013 29.8 8.6 61 128-219 10-70 (73)
147 COG0625 Gst Glutathione S-tran 87.4 1.7 3.8E-05 37.9 6.3 71 121-220 2-74 (211)
148 cd02965 HyaE HyaE family; HyaE 87.4 2.1 4.5E-05 35.6 6.3 48 117-172 28-81 (111)
149 PTZ00057 glutathione s-transfe 87.3 6 0.00013 34.6 9.6 74 119-217 4-78 (205)
150 KOG1422 Intracellular Cl- chan 87.1 2 4.4E-05 39.9 6.7 63 132-220 19-83 (221)
151 PRK14300 chaperone protein Dna 87.0 0.47 1E-05 46.4 2.8 66 222-289 128-205 (372)
152 cd02996 PDI_a_ERp44 PDIa famil 86.9 2.3 5E-05 33.2 6.2 36 119-160 21-68 (108)
153 cd02963 TRX_DnaJ TRX domain, D 86.9 5.6 0.00012 31.7 8.5 36 119-160 27-69 (111)
154 cd02987 Phd_like_Phd Phosducin 86.6 2.2 4.9E-05 37.4 6.5 35 119-158 85-124 (175)
155 PF02798 GST_N: Glutathione S- 86.3 4.8 0.0001 30.0 7.4 60 136-217 11-73 (76)
156 PRK10996 thioredoxin 2; Provis 86.0 4.5 9.7E-05 33.8 7.8 37 119-161 55-97 (139)
157 COG0178 UvrA Excinuclease ATPa 86.0 0.87 1.9E-05 49.6 4.2 52 206-258 696-764 (935)
158 cd03001 PDI_a_P5 PDIa family, 86.0 4.5 9.8E-05 30.6 7.2 36 119-160 21-62 (103)
159 PF13901 DUF4206: Domain of un 84.9 0.24 5.2E-06 44.8 -0.5 84 199-288 104-195 (202)
160 PRK14284 chaperone protein Dna 84.6 0.91 2E-05 44.8 3.4 51 236-288 158-217 (391)
161 cd02952 TRP14_like Human TRX-r 84.4 2.8 6E-05 35.1 5.7 28 133-160 39-72 (119)
162 PRK14285 chaperone protein Dna 84.1 0.98 2.1E-05 44.2 3.4 51 236-288 146-205 (365)
163 PRK14298 chaperone protein Dna 84.0 1 2.2E-05 44.3 3.5 66 223-288 125-204 (377)
164 cd03003 PDI_a_ERdj5_N PDIa fam 83.9 3.9 8.5E-05 31.4 6.1 36 119-160 21-62 (101)
165 cd02998 PDI_a_ERp38 PDIa famil 83.7 4.1 9E-05 30.7 6.1 34 119-158 21-62 (105)
166 PRK14295 chaperone protein Dna 83.6 0.83 1.8E-05 45.1 2.7 51 236-288 166-225 (389)
167 KOG0712 Molecular chaperone (D 83.4 0.94 2E-05 44.5 2.9 53 237-289 128-193 (337)
168 PRK14287 chaperone protein Dna 83.4 1.1 2.4E-05 43.9 3.4 54 236-289 138-202 (371)
169 PRK14290 chaperone protein Dna 83.2 1.1 2.4E-05 43.7 3.3 52 236-288 149-211 (365)
170 cd03002 PDI_a_MPD1_like PDI fa 82.8 5.3 0.00012 30.7 6.5 34 119-158 21-60 (109)
171 cd03065 PDI_b_Calsequestrin_N 82.8 5.2 0.00011 33.4 6.8 47 117-172 27-85 (120)
172 PRK14292 chaperone protein Dna 82.7 1.2 2.5E-05 43.6 3.2 67 222-288 122-203 (371)
173 PRK14286 chaperone protein Dna 82.6 0.98 2.1E-05 44.3 2.7 65 222-288 133-209 (372)
174 PRK14282 chaperone protein Dna 82.4 1.3 2.8E-05 43.3 3.5 52 237-288 153-215 (369)
175 PRK14301 chaperone protein Dna 82.2 0.99 2.1E-05 44.3 2.6 65 222-288 127-203 (373)
176 PRK14291 chaperone protein Dna 82.2 1.1 2.4E-05 44.0 2.9 64 223-288 140-214 (382)
177 KOG2813 Predicted molecular ch 82.1 1.3 2.7E-05 43.7 3.2 21 237-257 188-208 (406)
178 PRK14294 chaperone protein Dna 82.1 1.2 2.6E-05 43.5 3.1 51 236-288 144-203 (366)
179 COG2999 GrxB Glutaredoxin 2 [P 81.9 2.1 4.5E-05 39.2 4.3 77 122-229 3-80 (215)
180 cd03005 PDI_a_ERp46 PDIa famil 81.5 4.3 9.4E-05 30.7 5.4 36 119-160 19-63 (102)
181 PF00684 DnaJ_CXXCXGXG: DnaJ c 81.5 1.9 4.2E-05 32.1 3.3 37 236-281 15-66 (66)
182 cd02950 TxlA TRX-like protein 81.4 4.7 0.0001 34.0 6.1 35 119-159 23-63 (142)
183 PRK14285 chaperone protein Dna 81.3 1.3 2.7E-05 43.4 2.9 38 237-284 164-212 (365)
184 PRK14288 chaperone protein Dna 81.3 1.3 2.9E-05 43.3 3.1 50 237-288 141-198 (369)
185 PRK14289 chaperone protein Dna 81.0 1.4 3E-05 43.3 3.1 66 223-288 138-217 (386)
186 PRK14296 chaperone protein Dna 80.7 1.7 3.6E-05 42.8 3.6 66 222-288 132-212 (372)
187 cd02999 PDI_a_ERp44_like PDIa 80.6 6.3 0.00014 31.0 6.2 33 119-157 21-58 (100)
188 PRK14873 primosome assembly pr 80.3 1.9 4E-05 45.8 4.0 46 236-289 383-429 (665)
189 TIGR02349 DnaJ_bact chaperone 80.3 1.5 3.3E-05 42.3 3.1 53 236-288 143-206 (354)
190 PRK11752 putative S-transferas 80.2 9 0.0002 35.4 8.1 76 114-219 39-126 (264)
191 PRK14280 chaperone protein Dna 80.0 1.6 3.4E-05 42.9 3.1 66 223-288 127-206 (376)
192 cd03075 GST_N_Mu GST_N family, 79.8 11 0.00024 28.5 7.2 66 135-218 10-78 (82)
193 cd02997 PDI_a_PDIR PDIa family 79.8 5.8 0.00013 30.0 5.6 35 118-158 19-61 (104)
194 cd02993 PDI_a_APS_reductase PD 79.7 7.3 0.00016 30.7 6.4 36 117-158 22-64 (109)
195 PTZ00037 DnaJ_C chaperone prot 79.4 1.7 3.7E-05 43.6 3.2 51 237-288 151-214 (421)
196 PRK14278 chaperone protein Dna 79.1 2 4.4E-05 42.2 3.6 67 222-288 122-202 (378)
197 PTZ00443 Thioredoxin domain-co 78.9 8.4 0.00018 35.5 7.4 36 119-160 55-96 (224)
198 PRK14282 chaperone protein Dna 78.9 1.7 3.8E-05 42.4 3.0 38 237-284 170-222 (369)
199 PRK14297 chaperone protein Dna 78.9 1.8 3.9E-05 42.5 3.2 53 236-288 148-211 (380)
200 PRK14276 chaperone protein Dna 78.8 1.7 3.6E-05 42.8 2.9 53 236-288 146-209 (380)
201 PRK14301 chaperone protein Dna 78.6 1.7 3.7E-05 42.6 2.9 37 237-283 162-209 (373)
202 PRK14279 chaperone protein Dna 78.5 1.7 3.7E-05 42.9 2.9 64 223-288 157-232 (392)
203 PRK14277 chaperone protein Dna 78.4 1.9 4.1E-05 42.5 3.1 67 222-288 138-218 (386)
204 PRK14284 chaperone protein Dna 78.4 2.2 4.7E-05 42.1 3.6 38 236-283 175-223 (391)
205 PF13719 zinc_ribbon_5: zinc-r 78.3 1.6 3.5E-05 29.3 1.9 32 247-279 2-33 (37)
206 PRK14293 chaperone protein Dna 78.2 1.8 4E-05 42.4 3.0 67 222-288 126-206 (374)
207 PRK14280 chaperone protein Dna 78.2 2.2 4.7E-05 41.9 3.5 37 237-283 161-212 (376)
208 cd02955 SSP411 TRX domain, SSP 78.2 7.9 0.00017 32.4 6.4 46 118-168 16-70 (124)
209 PRK14279 chaperone protein Dna 78.1 1.6 3.6E-05 43.1 2.6 39 236-284 190-239 (392)
210 PF10865 DUF2703: Domain of un 78.0 12 0.00026 31.7 7.4 81 130-262 11-103 (120)
211 PRK14286 chaperone protein Dna 77.9 2 4.2E-05 42.2 3.1 38 237-284 168-216 (372)
212 PRK10542 glutathionine S-trans 77.9 8.1 0.00017 33.1 6.6 61 136-219 10-74 (201)
213 PRK10767 chaperone protein Dna 77.8 2 4.4E-05 41.9 3.2 38 237-284 160-208 (371)
214 PRK14296 chaperone protein Dna 77.8 2.1 4.5E-05 42.1 3.2 37 237-283 167-218 (372)
215 TIGR00595 priA primosomal prot 77.8 1.8 3.9E-05 44.1 2.9 45 237-289 214-260 (505)
216 PRK14297 chaperone protein Dna 77.5 2 4.4E-05 42.1 3.1 37 237-283 166-217 (380)
217 PRK14278 chaperone protein Dna 77.4 2 4.3E-05 42.3 3.0 37 237-283 157-208 (378)
218 PRK14288 chaperone protein Dna 77.3 2.1 4.6E-05 41.9 3.1 37 237-283 157-204 (369)
219 PRK14300 chaperone protein Dna 76.6 2.2 4.7E-05 41.9 3.0 37 237-283 163-210 (372)
220 PRK14295 chaperone protein Dna 76.2 2.4 5.2E-05 41.9 3.2 37 237-283 184-231 (389)
221 PRK14298 chaperone protein Dna 76.2 2.2 4.9E-05 41.9 2.9 37 237-283 159-210 (377)
222 PRK14294 chaperone protein Dna 75.9 2.4 5.1E-05 41.5 3.0 37 237-283 162-209 (366)
223 PRK14281 chaperone protein Dna 75.5 2.5 5.5E-05 41.8 3.1 67 222-288 146-225 (397)
224 PRK14281 chaperone protein Dna 75.4 2.5 5.5E-05 41.8 3.1 38 237-284 180-232 (397)
225 PRK14283 chaperone protein Dna 75.4 2.8 6.1E-05 41.1 3.4 68 222-289 129-210 (378)
226 PRK14276 chaperone protein Dna 75.0 2.9 6.3E-05 41.1 3.4 37 237-283 164-215 (380)
227 PRK14293 chaperone protein Dna 74.7 1.9 4.2E-05 42.2 2.1 32 245-283 141-172 (374)
228 cd03000 PDI_a_TMX3 PDIa family 74.4 10 0.00023 29.4 5.8 36 119-160 18-62 (104)
229 PRK14277 chaperone protein Dna 74.1 2.9 6.2E-05 41.2 3.1 37 237-283 173-224 (386)
230 TIGR02349 DnaJ_bact chaperone 73.8 3.1 6.8E-05 40.2 3.2 39 236-284 160-213 (354)
231 TIGR02642 phage_xxxx uncharact 73.8 2.5 5.5E-05 38.3 2.4 27 236-262 99-130 (186)
232 PRK14290 chaperone protein Dna 73.3 3 6.5E-05 40.7 3.0 37 237-283 166-217 (365)
233 cd02995 PDI_a_PDI_a'_C PDIa fa 72.8 12 0.00025 28.2 5.6 36 117-158 19-62 (104)
234 PRK14289 chaperone protein Dna 72.8 4.1 8.9E-05 40.1 3.8 38 236-283 171-223 (386)
235 cd03006 PDI_a_EFP1_N PDIa fami 72.7 6.5 0.00014 32.2 4.4 36 119-160 32-73 (113)
236 COG3340 PepE Peptidase E [Amin 72.3 24 0.00052 33.0 8.4 83 118-232 32-117 (224)
237 PTZ00037 DnaJ_C chaperone prot 72.3 3.4 7.4E-05 41.5 3.2 41 236-284 166-221 (421)
238 PRK05580 primosome assembly pr 72.0 3 6.5E-05 44.1 2.8 45 236-288 381-427 (679)
239 PF07315 DUF1462: Protein of u 71.0 19 0.00042 29.4 6.6 50 148-218 37-89 (93)
240 PRK14291 chaperone protein Dna 70.0 3 6.5E-05 41.0 2.2 38 236-284 173-221 (382)
241 cd02988 Phd_like_VIAF Phosduci 69.8 13 0.00027 33.4 5.9 33 119-157 104-142 (192)
242 PF14595 Thioredoxin_9: Thiore 69.3 3 6.5E-05 35.1 1.8 36 116-157 41-81 (129)
243 PF14354 Lar_restr_allev: Rest 69.1 3.8 8.3E-05 29.5 2.1 32 247-279 3-37 (61)
244 PF13717 zinc_ribbon_4: zinc-r 68.9 3.5 7.7E-05 27.6 1.7 31 248-279 3-33 (36)
245 cd02992 PDI_a_QSOX PDIa family 68.0 14 0.00029 29.8 5.3 22 119-146 22-43 (114)
246 PRK14287 chaperone protein Dna 67.4 4.4 9.6E-05 39.8 2.7 37 237-283 156-207 (371)
247 cd03023 DsbA_Com1_like DsbA fa 66.8 4.4 9.6E-05 32.6 2.2 63 139-218 87-150 (154)
248 COG5494 Predicted thioredoxin/ 65.5 22 0.00048 33.5 6.7 69 118-219 11-85 (265)
249 COG4837 Uncharacterized protei 65.4 25 0.00054 29.2 6.2 76 116-217 3-95 (106)
250 PRK14292 chaperone protein Dna 64.3 5.7 0.00012 38.8 2.9 38 236-283 157-209 (371)
251 PF06764 DUF1223: Protein of u 64.3 18 0.00039 33.0 5.9 22 120-147 2-23 (202)
252 KOG1695 Glutathione S-transfer 64.3 27 0.00059 32.0 7.1 61 133-217 11-71 (206)
253 cd03009 TryX_like_TryX_NRX Try 64.1 32 0.0007 27.5 6.8 34 120-159 21-64 (131)
254 KOG0907 Thioredoxin [Posttrans 63.4 21 0.00046 29.1 5.6 37 117-158 21-62 (106)
255 PF13728 TraF: F plasmid trans 63.3 24 0.00052 32.1 6.5 36 116-157 120-159 (215)
256 TIGR02740 TraF-like TraF-like 63.3 18 0.00038 34.1 5.8 36 117-158 167-206 (271)
257 cd03022 DsbA_HCCA_Iso DsbA fam 63.2 10 0.00023 32.1 4.0 63 139-218 125-188 (192)
258 KOG4244 Failed axon connection 63.1 11 0.00025 36.2 4.5 53 133-216 60-112 (281)
259 KOG4420 Uncharacterized conser 63.0 4.4 9.5E-05 39.2 1.7 85 105-220 15-100 (325)
260 PRK11657 dsbG disulfide isomer 62.4 11 0.00024 35.0 4.3 37 114-156 115-155 (251)
261 TIGR02642 phage_xxxx uncharact 62.2 5.3 0.00011 36.2 2.0 30 247-284 99-128 (186)
262 PRK13728 conjugal transfer pro 61.6 15 0.00032 33.1 4.8 33 120-158 73-109 (181)
263 PRK00293 dipZ thiol:disulfide 60.9 27 0.00059 36.3 7.2 48 119-171 476-531 (571)
264 PRK14283 chaperone protein Dna 60.0 7.7 0.00017 38.1 2.9 37 237-283 164-215 (378)
265 PF10568 Tom37: Outer mitochon 59.9 65 0.0014 24.5 7.4 55 133-218 13-71 (72)
266 PLN00410 U5 snRNP protein, DIM 58.2 16 0.00036 31.5 4.3 39 120-164 27-71 (142)
267 PF11331 DUF3133: Protein of u 57.5 5.6 0.00012 28.5 1.1 38 243-280 2-40 (46)
268 COG0484 DnaJ DnaJ-class molecu 57.4 8.8 0.00019 38.3 2.8 33 244-283 139-171 (371)
269 cd02964 TryX_like_family Trypa 56.9 49 0.0011 26.7 6.7 27 133-159 28-63 (132)
270 COG1198 PriA Primosomal protei 56.7 10 0.00022 41.0 3.3 46 236-289 435-482 (730)
271 COG1107 Archaea-specific RecJ- 56.2 7.2 0.00016 41.3 2.0 41 239-288 21-86 (715)
272 cd02982 PDI_b'_family Protein 56.1 20 0.00043 27.2 4.1 35 119-159 15-55 (103)
273 cd02986 DLP Dim1 family, Dim1- 55.8 19 0.00041 30.2 4.1 43 117-164 14-62 (114)
274 PRK00635 excinuclease ABC subu 55.3 12 0.00026 44.3 3.8 51 207-258 1574-1641(1809)
275 TIGR00630 uvra excinuclease AB 55.1 11 0.00023 41.7 3.3 22 236-257 736-769 (924)
276 PF13462 Thioredoxin_4: Thiore 54.8 22 0.00048 29.0 4.4 19 197-215 136-154 (162)
277 PF00731 AIRC: AIR carboxylase 54.7 22 0.00048 31.1 4.6 39 119-161 2-40 (150)
278 cd03023 DsbA_Com1_like DsbA fa 54.5 16 0.00034 29.3 3.4 38 114-157 3-45 (154)
279 smart00834 CxxC_CXXC_SSSS Puta 54.5 8.5 0.00019 25.3 1.6 28 249-279 7-34 (41)
280 PF13462 Thioredoxin_4: Thiore 54.3 18 0.00039 29.6 3.8 42 114-161 10-59 (162)
281 PF13899 Thioredoxin_7: Thiore 54.2 46 0.001 24.8 5.8 36 118-158 18-62 (82)
282 PLN03165 chaperone protein dna 53.5 9.7 0.00021 31.9 2.0 23 237-259 76-98 (111)
283 cd03010 TlpA_like_DsbE TlpA-li 52.3 53 0.0011 26.0 6.1 36 119-160 28-67 (127)
284 TIGR02098 MJ0042_CXXC MJ0042 f 52.1 11 0.00025 24.7 1.8 32 248-280 3-34 (38)
285 TIGR00424 APS_reduc 5'-adenyly 51.6 40 0.00086 34.6 6.5 35 119-159 374-415 (463)
286 PF15616 TerY-C: TerY-C metal 50.8 13 0.00028 32.1 2.4 39 237-283 78-117 (131)
287 cd03019 DsbA_DsbA DsbA family, 50.2 10 0.00022 31.6 1.7 60 138-214 100-160 (178)
288 PF14205 Cys_rich_KTR: Cystein 49.2 17 0.00036 27.1 2.5 39 245-283 2-40 (55)
289 KOG0868 Glutathione S-transfer 49.0 40 0.00087 31.1 5.4 75 118-221 4-81 (217)
290 PTZ00062 glutaredoxin; Provisi 48.9 53 0.0011 30.0 6.2 35 117-156 17-56 (204)
291 cd02966 TlpA_like_family TlpA- 47.1 76 0.0016 23.2 5.9 35 119-159 22-63 (116)
292 PRK15412 thiol:disulfide inter 46.1 65 0.0014 27.9 6.2 36 120-161 72-110 (185)
293 COG3118 Thioredoxin domain-con 46.1 25 0.00054 34.3 3.8 61 119-211 45-113 (304)
294 COG3634 AhpF Alkyl hydroperoxi 45.9 63 0.0014 33.0 6.6 73 102-210 105-182 (520)
295 PF08792 A2L_zn_ribbon: A2L zi 45.9 11 0.00025 24.9 1.1 8 271-278 21-28 (33)
296 PF09297 zf-NADH-PPase: NADH p 45.9 12 0.00026 24.1 1.2 24 250-279 6-29 (32)
297 TIGR00108 eRF peptide chain re 45.0 12 0.00026 37.5 1.5 55 204-258 290-357 (409)
298 PLN02309 5'-adenylylsulfate re 44.5 49 0.0011 33.9 5.8 35 117-157 366-407 (457)
299 PTZ00102 disulphide isomerase; 44.3 64 0.0014 31.5 6.5 37 118-160 51-96 (477)
300 TIGR01130 ER_PDI_fam protein d 43.9 67 0.0014 30.9 6.5 36 119-160 21-65 (462)
301 COG0526 TrxA Thiol-disulfide i 43.8 51 0.0011 23.4 4.4 35 133-167 43-84 (127)
302 TIGR03655 anti_R_Lar restricti 43.8 22 0.00048 25.3 2.4 33 248-281 2-36 (53)
303 TIGR00385 dsbE periplasmic pro 43.4 75 0.0016 27.1 6.1 33 120-158 67-102 (173)
304 PF09413 DUF2007: Domain of un 43.2 28 0.0006 25.3 2.9 33 120-158 1-33 (67)
305 PRK02935 hypothetical protein; 43.1 14 0.00031 31.0 1.5 25 248-280 71-95 (110)
306 PF01323 DSBA: DSBA-like thior 42.9 11 0.00024 31.9 0.8 64 138-218 124-189 (193)
307 cd03019 DsbA_DsbA DsbA family, 42.7 31 0.00068 28.7 3.6 38 115-158 14-57 (178)
308 PF13905 Thioredoxin_8: Thiore 42.4 69 0.0015 23.9 5.1 45 120-171 5-55 (95)
309 KOG0867 Glutathione S-transfer 42.0 1E+02 0.0022 27.9 7.0 72 119-219 2-75 (226)
310 cd03011 TlpA_like_ScsD_MtbDsbE 40.6 29 0.00064 27.1 2.9 23 119-147 23-45 (123)
311 PRK14714 DNA polymerase II lar 40.5 21 0.00045 40.9 2.7 17 138-154 535-551 (1337)
312 PF03575 Peptidase_S51: Peptid 40.3 92 0.002 26.2 6.1 22 138-159 3-24 (154)
313 COG1365 Predicted ATPase (PP-l 40.3 33 0.00072 32.4 3.6 57 107-172 52-111 (255)
314 PRK10954 periplasmic protein d 39.9 16 0.00036 32.3 1.5 59 138-213 124-183 (207)
315 PF08271 TF_Zn_Ribbon: TFIIB z 39.3 21 0.00046 24.3 1.7 24 249-277 2-25 (43)
316 cd02970 PRX_like2 Peroxiredoxi 38.0 1.1E+02 0.0024 24.4 6.0 25 133-157 35-66 (149)
317 TIGR02661 MauD methylamine deh 37.8 87 0.0019 27.4 5.7 30 120-155 78-111 (189)
318 TIGR02739 TraF type-F conjugat 36.8 78 0.0017 30.0 5.5 37 116-158 150-190 (256)
319 cd03008 TryX_like_RdCVF Trypar 36.6 89 0.0019 26.9 5.5 23 119-146 27-49 (146)
320 COG0041 PurE Phosphoribosylcar 36.3 1.2E+02 0.0025 27.3 6.1 28 133-160 14-41 (162)
321 PF11023 DUF2614: Protein of u 35.7 19 0.00041 30.5 1.1 26 247-280 69-94 (114)
322 PF01096 TFIIS_C: Transcriptio 35.4 24 0.00052 23.9 1.4 32 248-279 1-36 (39)
323 PRK03147 thiol-disulfide oxido 35.4 1.3E+02 0.0027 25.0 6.1 36 119-160 64-106 (173)
324 TIGR03676 aRF1/eRF1 peptide ch 34.8 28 0.00061 34.8 2.4 55 204-258 286-353 (403)
325 PRK00349 uvrA excinuclease ABC 34.8 28 0.00061 38.6 2.6 59 199-258 685-772 (943)
326 PF15643 Tox-PL-2: Papain fold 34.4 66 0.0014 26.7 4.0 26 133-158 20-46 (100)
327 PF00578 AhpC-TSA: AhpC/TSA fa 34.4 1.6E+02 0.0034 22.7 6.2 37 118-158 26-69 (124)
328 PF04566 RNA_pol_Rpb2_4: RNA p 33.5 33 0.00072 25.7 2.1 18 201-218 1-18 (63)
329 PF11287 DUF3088: Protein of u 33.5 87 0.0019 26.5 4.7 43 128-173 18-65 (112)
330 PF04216 FdhE: Protein involve 33.1 27 0.00059 32.9 1.9 35 236-280 172-220 (290)
331 PRK03564 formate dehydrogenase 32.1 47 0.001 32.4 3.3 13 244-256 209-221 (309)
332 TIGR02738 TrbB type-F conjugat 32.0 1E+02 0.0022 26.6 5.1 36 117-158 51-90 (153)
333 PRK04023 DNA polymerase II lar 31.7 51 0.0011 37.2 3.8 71 201-289 597-670 (1121)
334 PF01873 eIF-5_eIF-2B: Domain 31.5 26 0.00057 29.7 1.3 45 219-279 78-122 (125)
335 TIGR01162 purE phosphoribosyla 31.2 1.4E+02 0.0031 26.4 6.0 28 133-160 10-37 (156)
336 PRK04011 peptide chain release 30.9 34 0.00074 34.3 2.2 56 204-259 294-362 (411)
337 PRK00635 excinuclease ABC subu 30.7 55 0.0012 39.0 4.1 51 206-257 686-750 (1809)
338 smart00653 eIF2B_5 domain pres 30.6 38 0.00083 28.1 2.1 30 246-278 79-108 (110)
339 cd03024 DsbA_FrnE DsbA family, 30.4 31 0.00067 29.5 1.7 61 139-216 133-195 (201)
340 PF05180 zf-DNL: DNL zinc fing 30.2 11 0.00024 28.9 -1.1 35 249-283 6-41 (66)
341 cd01480 vWA_collagen_alpha_1-V 30.2 3.5E+02 0.0076 23.2 8.6 91 99-206 92-184 (186)
342 cd03146 GAT1_Peptidase_E Type 30.0 4E+02 0.0087 23.7 9.3 92 103-230 18-110 (212)
343 smart00659 RPOLCX RNA polymera 29.6 33 0.00072 24.0 1.4 11 271-281 19-29 (44)
344 PF09138 Urm1: Urm1 (Ubiquitin 29.5 45 0.00098 27.2 2.3 13 69-81 65-79 (96)
345 smart00440 ZnF_C2C2 C2C2 Zinc 29.4 52 0.0011 22.4 2.3 31 249-279 2-36 (40)
346 PF01323 DSBA: DSBA-like thior 28.9 1.1E+02 0.0025 25.6 4.9 37 119-161 1-42 (193)
347 cd03129 GAT1_Peptidase_E_like 28.8 4.1E+02 0.0088 23.4 10.1 96 103-231 16-112 (210)
348 COG4332 Uncharacterized protei 28.3 26 0.00056 32.2 0.8 42 236-280 17-58 (203)
349 PF08273 Prim_Zn_Ribbon: Zinc- 28.2 43 0.00093 23.2 1.7 30 246-278 2-33 (40)
350 PHA00626 hypothetical protein 27.9 41 0.00088 25.4 1.6 17 239-255 3-19 (59)
351 PF04236 Transp_Tc5_C: Tc5 tra 27.5 36 0.00079 25.7 1.4 18 271-288 27-46 (63)
352 PRK03988 translation initiatio 27.5 58 0.0013 28.1 2.8 35 246-283 101-135 (138)
353 PF01807 zf-CHC2: CHC2 zinc fi 27.0 87 0.0019 24.9 3.6 61 213-282 5-65 (97)
354 PRK14890 putative Zn-ribbon RN 26.6 31 0.00067 26.0 0.8 7 237-243 8-14 (59)
355 cd05295 MDH_like Malate dehydr 26.4 1.7E+02 0.0037 30.1 6.3 71 131-219 1-82 (452)
356 smart00594 UAS UAS domain. 26.2 2.9E+02 0.0064 22.2 6.7 46 118-171 28-83 (122)
357 TIGR03865 PQQ_CXXCW PQQ-depend 26.0 1.7E+02 0.0037 25.2 5.5 39 106-150 105-143 (162)
358 cd01453 vWA_transcription_fact 25.7 4.4E+02 0.0096 22.9 8.1 66 99-169 90-157 (183)
359 PF06110 DUF953: Eukaryotic pr 25.6 1.5E+02 0.0033 24.9 4.9 41 117-157 19-67 (119)
360 KOG4684 Uncharacterized conser 25.5 27 0.00057 33.0 0.4 19 270-288 169-195 (275)
361 PRK00564 hypA hydrogenase nick 25.5 33 0.00072 28.5 0.9 10 271-280 88-97 (117)
362 PF08534 Redoxin: Redoxin; In 25.1 3.4E+02 0.0073 21.8 6.9 46 119-168 30-82 (146)
363 TIGR00311 aIF-2beta translatio 25.0 71 0.0015 27.4 2.9 35 246-283 96-130 (133)
364 PTZ00102 disulphide isomerase; 24.8 1.3E+02 0.0028 29.4 5.0 35 119-159 378-420 (477)
365 PF03833 PolC_DP2: DNA polymer 24.6 25 0.00054 38.8 0.0 42 236-288 655-698 (900)
366 KOG4146 Ubiquitin-like protein 24.4 68 0.0015 26.5 2.5 14 68-81 69-84 (101)
367 PRK14018 trifunctional thiored 24.3 3E+02 0.0065 28.8 7.7 21 120-146 60-80 (521)
368 COG2260 Predicted Zn-ribbon RN 24.1 38 0.00083 25.6 0.9 18 271-288 5-23 (59)
369 PRK13703 conjugal pilus assemb 23.9 79 0.0017 29.8 3.2 37 116-158 143-183 (248)
370 PF09369 DUF1998: Domain of un 23.5 20 0.00043 27.4 -0.7 33 199-231 36-68 (84)
371 PF03811 Zn_Tnp_IS1: InsA N-te 23.2 90 0.0019 21.1 2.5 30 248-277 6-35 (36)
372 cd02958 UAS UAS family; UAS is 23.0 1.7E+02 0.0037 23.0 4.6 19 118-141 18-36 (114)
373 smart00778 Prim_Zn_Ribbon Zinc 22.8 67 0.0014 21.9 1.8 31 246-279 2-33 (37)
374 PRK09437 bcp thioredoxin-depen 22.8 2.2E+02 0.0047 23.4 5.3 25 133-157 42-73 (154)
375 PF09788 Tmemb_55A: Transmembr 22.3 45 0.00098 31.8 1.2 17 272-288 158-183 (256)
376 PF09822 ABC_transp_aux: ABC-t 22.2 1.8E+02 0.004 26.6 5.2 66 99-172 14-86 (271)
377 PRK04023 DNA polymerase II lar 22.2 58 0.0013 36.8 2.2 14 139-152 506-519 (1121)
378 KOG2767 Translation initiation 22.0 31 0.00067 34.6 0.1 59 204-283 71-130 (400)
379 cd04333 ProX_deacylase This CD 21.8 1.4E+02 0.0031 24.9 4.1 35 138-172 2-36 (148)
380 cd01452 VWA_26S_proteasome_sub 21.1 6.1E+02 0.013 22.8 8.5 67 99-170 89-158 (187)
381 PF07092 DUF1356: Protein of u 21.0 50 0.0011 31.2 1.3 28 236-263 27-54 (238)
382 PF04783 DUF630: Protein of un 21.0 46 0.00099 25.1 0.8 11 1-11 1-11 (60)
383 COG5347 GTPase-activating prot 21.0 45 0.00098 32.6 1.0 30 231-260 15-53 (319)
384 PF13364 BetaGal_dom4_5: Beta- 20.9 67 0.0015 26.1 1.9 14 199-212 65-78 (111)
385 cd03017 PRX_BCP Peroxiredoxin 20.6 2.1E+02 0.0045 22.7 4.7 25 133-157 35-66 (140)
386 PRK12336 translation initiatio 20.6 92 0.002 28.2 2.8 32 247-281 98-129 (201)
387 PRK00415 rps27e 30S ribosomal 20.5 49 0.0011 25.0 0.9 27 248-279 12-38 (59)
388 PF08218 Citrate_ly_lig: Citra 20.3 1.3E+02 0.0027 27.5 3.6 53 161-232 124-176 (182)
389 cd02967 mauD Methylamine utili 20.3 1E+02 0.0022 23.7 2.7 22 119-146 24-45 (114)
390 TIGR00595 priA primosomal prot 20.3 69 0.0015 32.8 2.2 37 235-282 221-264 (505)
391 PRK11788 tetratricopeptide rep 20.2 63 0.0014 30.1 1.7 37 223-259 341-380 (389)
392 PRK00420 hypothetical protein; 20.1 62 0.0013 27.2 1.5 10 271-280 40-49 (112)
No 1
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-68 Score=489.22 Aligned_cols=236 Identities=52% Similarity=0.937 Sum_probs=196.7
Q ss_pred eEEEeecccccccccCCCCCCCCCCCCccccCCCC--------CCCCCcccccchhhhhcccCCCCcchhccc-------
Q 041824 26 HIVSLTSTTYGLLNVDPPATTPPTRPQRFTLGSIL--------PGEPVRAEVINSWELMSGLGESDNNSLRKA------- 90 (289)
Q Consensus 26 h~v~lts~t~g~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~e~in~welm~gl~~~~~~~~~~~------- 90 (289)
|+|+|||||||+|.| |+++|+|++..... ..++..||+||+||||.+|+++...+++-+
T Consensus 1 ~~~~lts~~~~~l~~------~~~~p~~~~~~~k~~~~~~~~~~~~~~~~~~i~s~e~~~~l~~~~~~~~~~p~~~~~~~ 74 (281)
T KOG2824|consen 1 HIVSLTSTTYGLLVL------PMTLPPRVTVSGKESKIAPIRDSSSPTGPEVINSWELMLDLDDELHRSCKTPITPTSVS 74 (281)
T ss_pred Ccccccchhhhheec------cccCCcceecccccccccccccCCCCCchhhhhhhhhccCccccccccccCCCCCcccc
Confidence 899999999999998 66777777775541 234456799999999999998553211111
Q ss_pred ------cC----C---------CCC--ch----HHHH----HHHHHhhhcCCCCCCCcEEEEEecCCCCCCCCHHHHHHH
Q 041824 91 ------KE----N---------PSV--NS----AVIK----SVLERFERICPPDGENKVVIYTTTLRGIRKTYEACKAAK 141 (289)
Q Consensus 91 ------~~----~---------~~~--~~----~~~~----~~l~~f~~~~pp~~~~kVVVYttSLrgvR~tC~~C~~ak 141 (289)
.. + |.. .+ +... ..+..|+++|||+++++||||+|||||||+||++|..||
T Consensus 75 ~~~~~~~~~~~s~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~Pgge~~VVvY~TsLRgvRkTfE~C~~VR 154 (281)
T KOG2824|consen 75 LRVKALNLLGKSKGSWPPVILKPEKRLSSESGLKELDKSPNKLLLEFKEVCPPGGEDRVVVYTTSLRGVRKTFEDCNAVR 154 (281)
T ss_pred cccccccccccccCcCCcccccccccccccccccccccccccchhhhhhcCCCCCCceEEEEEcccchhhhhHHHHHHHH
Confidence 00 0 111 00 1111 477899999999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeEEechHHHHHHHHhC
Q 041824 142 SVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRYVGGAEEVLRIVEEG 221 (289)
Q Consensus 142 ~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~IGG~del~~L~E~G 221 (289)
+||++++|.|+||||+||.+|++||++++|.. ....+||+|||+|+||||+++|++|||.|
T Consensus 155 ~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~-------------------~~~~~LPrVFV~GryIGgaeeV~~LnE~G 215 (281)
T KOG2824|consen 155 AILESFRVKVDERDVSMDSEFREELQELLGED-------------------EKAVSLPRVFVKGRYIGGAEEVVRLNEEG 215 (281)
T ss_pred HHHHhCceEEEEecccccHHHHHHHHHHHhcc-------------------cccCccCeEEEccEEeccHHHhhhhhhcc
Confidence 99999999999999999999999999999873 12357899999999999999999999999
Q ss_pred cHHHHhccCCCcccCCcccCCCCceeEeCCCCCCcceeeeccCCCCccccccCCccCcCCcccCCCCC
Q 041824 222 WFGELIEGIPIRKLKGVCQGCADVRFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLVLCPLCS 289 (289)
Q Consensus 222 ~L~~lL~~~~~~~~~~~C~~Cgg~rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLvrCp~C~ 289 (289)
+|.+||+++| .....+|++|||.||+||..||||||++.+. ..+..++||++||||||||||+|+
T Consensus 216 kL~~lL~~~p-~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~~--~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 216 KLGKLLKGIP-CEGGGVCESCGGARFLPCSNCHGSCKVHEEE--EDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred hHHHHHhcCC-CCCCCcCCCcCCcceEecCCCCCceeeeeec--cCCCcEEECcccCCCCceeCCccC
Confidence 9999999999 3356899999999999999999999999853 223459999999999999999996
No 2
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=100.00 E-value=1.9e-51 Score=352.34 Aligned_cols=147 Identities=54% Similarity=1.009 Sum_probs=135.1
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
+||||||||+|||+||++|++||+||++++|+|+|+||+||+++++||+++++.. +++.++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~----------------~~~~tv--- 61 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAE----------------LKAVSL--- 61 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCC----------------CCCCCC---
Confidence 5999999999999999999999999999999999999999999999999998753 123345
Q ss_pred CEEEECCeEEechHHHHHHHHhCcHHHHhccCCCcccCCcccCCCCceeEeCCCCCCcceeeeccCCCCccccccCCccC
Q 041824 199 PRVFVKGRYVGGAEEVLRIVEEGWFGELIEGIPIRKLKGVCQGCADVRFFPCFRCNGSCKLVINMQPRGKTAALRCPDCN 278 (289)
Q Consensus 199 PqIFI~G~~IGG~del~~L~E~G~L~~lL~~~~~~~~~~~C~~Cgg~rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CN 278 (289)
|||||+|+||||+|++++|||+|+|+++|++++.......|++|||.|||||..||||+|++.++.+ +...++||++||
T Consensus 62 PqVFI~G~~IGG~del~~L~e~G~L~~lL~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~-~~~~~~rC~~Cn 140 (147)
T cd03031 62 PRVFVDGRYLGGAEEVLRLNESGELRKLLKGIRARAGGGVCEGCGGARFVPCSECNGSCKVFAENAT-AAGGFLRCPECN 140 (147)
T ss_pred CEEEECCEEEecHHHHHHHHHcCCHHHHHhhcccccCCCCCCCCCCcCeEECCCCCCcceEEeccCc-ccccEEECCCCC
Confidence 9999999999999999999999999999999988877889999999999999999999999988642 335689999999
Q ss_pred cCCcccC
Q 041824 279 ENGLVLC 285 (289)
Q Consensus 279 ENGLvrC 285 (289)
|||||||
T Consensus 141 engl~~c 147 (147)
T cd03031 141 ENGLVRC 147 (147)
T ss_pred ccccccC
Confidence 9999999
No 3
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.91 E-value=3.6e-24 Score=170.75 Aligned_cols=90 Identities=21% Similarity=0.384 Sum_probs=83.0
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLP 199 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LP 199 (289)
|+||+||++|+|++...|++++++|++++|+|+|+||++|++.++||+++++.. .+..++ |
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~----------------~g~~tv---P 62 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNE----------------NGKPLP---P 62 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCC----------------CCCCCC---C
Confidence 899999999999999999999999999999999999999999999999998641 012355 9
Q ss_pred EEEECCeEEechHHHHHHHHhCcHHHHhc
Q 041824 200 RVFVKGRYVGGAEEVLRIVEEGWFGELIE 228 (289)
Q Consensus 200 qIFI~G~~IGG~del~~L~E~G~L~~lL~ 228 (289)
||||||+||||+|++.+|+++|+|+++|+
T Consensus 63 QIFi~~~~iGg~ddl~~l~e~g~L~~lLk 91 (92)
T cd03030 63 QIFNGDEYCGDYEAFFEAKENNTLEEFLK 91 (92)
T ss_pred EEEECCEEeeCHHHHHHHHhCCCHHHHhC
Confidence 99999999999999999999999999986
No 4
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.86 E-value=2.5e-21 Score=154.49 Aligned_cols=89 Identities=22% Similarity=0.368 Sum_probs=78.7
Q ss_pred CCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCC
Q 041824 115 DGENKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPL 194 (289)
Q Consensus 115 ~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~t 194 (289)
..+++||||+++. --+.+|++|.+||++|+.+||+|+++||..+++.+++|+++.|.. +
T Consensus 9 i~~~~Vvvf~kg~-~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~--------------------t 67 (97)
T TIGR00365 9 IKENPVVLYMKGT-PQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWP--------------------T 67 (97)
T ss_pred hccCCEEEEEccC-CCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCC--------------------C
Confidence 3578999999853 123489999999999999999999999999999999999887643 5
Q ss_pred CCCCCEEEECCeEEechHHHHHHHHhCcHHHHh
Q 041824 195 PPVLPRVFVKGRYVGGAEEVLRIVEEGWFGELI 227 (289)
Q Consensus 195 v~~LPqIFI~G~~IGG~del~~L~E~G~L~~lL 227 (289)
+ |||||||++|||+|++.+|+++|+|.++|
T Consensus 68 v---P~vfi~g~~iGG~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 68 I---PQLYVKGEFVGGCDIIMEMYQSGELQTLL 97 (97)
T ss_pred C---CEEEECCEEEeChHHHHHHHHCcChHHhC
Confidence 6 99999999999999999999999999886
No 5
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.86 E-value=2.3e-21 Score=155.17 Aligned_cols=87 Identities=26% Similarity=0.468 Sum_probs=74.8
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHH---HHHHHHcccccccCCCCCcchhhccCCC
Q 041824 116 GENKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKE---ELRELMMRRRRRSSSSNNNEEEAESSVQ 192 (289)
Q Consensus 116 ~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~re---EL~~llg~~~~~~~~s~~~~~~g~~t~~ 192 (289)
.+++|+||+++ +||+|.+||++|+++||+|+++||+.+++..+ ++.+++| +
T Consensus 6 ~~~~Vvvysk~------~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg--------------------~ 59 (99)
T TIGR02189 6 SEKAVVIFSRS------SCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGC--------------------S 59 (99)
T ss_pred ccCCEEEEECC------CCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcC--------------------C
Confidence 46889999999 99999999999999999999999998866443 3444333 3
Q ss_pred CCCCCCCEEEECCeEEechHHHHHHHHhCcHHHHhccCC
Q 041824 193 PLPPVLPRVFVKGRYVGGAEEVLRIVEEGWFGELIEGIP 231 (289)
Q Consensus 193 ~tv~~LPqIFI~G~~IGG~del~~L~E~G~L~~lL~~~~ 231 (289)
.++ |||||||++|||+|++.+|+++|+|+++|+.+.
T Consensus 60 ~tv---P~Vfi~g~~iGG~ddl~~l~~~G~L~~~l~~~~ 95 (99)
T TIGR02189 60 PAV---PAVFVGGKLVGGLENVMALHISGSLVPMLKQAG 95 (99)
T ss_pred CCc---CeEEECCEEEcCHHHHHHHHHcCCHHHHHHHhC
Confidence 356 999999999999999999999999999997653
No 6
>PHA03050 glutaredoxin; Provisional
Probab=99.85 E-value=8e-21 Score=154.98 Aligned_cols=88 Identities=23% Similarity=0.462 Sum_probs=79.6
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCC---cEEEEEcCC---ChhHHHHHHHHHcccccccCCCCCcchhhcc
Q 041824 116 GENKVVIYTTTLRGIRKTYEACKAAKSVIENFGV---AVSERDVSM---DRGFKEELRELMMRRRRRSSSSNNNEEEAES 189 (289)
Q Consensus 116 ~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV---~y~ErDVs~---d~~~reEL~~llg~~~~~~~~s~~~~~~g~~ 189 (289)
.+++|+||+++ +||||.+||++|+.++| .|+++||+. +.+.+++|.+++|.+
T Consensus 11 ~~~~V~vys~~------~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~---------------- 68 (108)
T PHA03050 11 ANNKVTIFVKF------TCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGR---------------- 68 (108)
T ss_pred ccCCEEEEECC------CChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCC----------------
Confidence 46789999999 99999999999999999 799999986 567899999987753
Q ss_pred CCCCCCCCCCEEEECCeEEechHHHHHHHHhCcHHHHhccCCC
Q 041824 190 SVQPLPPVLPRVFVKGRYVGGAEEVLRIVEEGWFGELIEGIPI 232 (289)
Q Consensus 190 t~~~tv~~LPqIFI~G~~IGG~del~~L~E~G~L~~lL~~~~~ 232 (289)
++ |+|||||++|||+|++++|+++|+|.++|+.+..
T Consensus 69 ----tV---P~IfI~g~~iGG~ddl~~l~~~g~L~~~l~~~~~ 104 (108)
T PHA03050 69 ----TV---PRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGV 104 (108)
T ss_pred ----Cc---CEEEECCEEEeChHHHHHHHHcCCHHHHHHHccc
Confidence 56 9999999999999999999999999999987643
No 7
>PRK10824 glutaredoxin-4; Provisional
Probab=99.85 E-value=6e-21 Score=158.13 Aligned_cols=92 Identities=21% Similarity=0.345 Sum_probs=81.4
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCC
Q 041824 116 GENKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLP 195 (289)
Q Consensus 116 ~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv 195 (289)
.+++||||+++- -...+|+||.+|+++|+.+||+|.++||..+.+.+++|++++|. +|+
T Consensus 13 ~~~~Vvvf~Kg~-~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~--------------------~TV 71 (115)
T PRK10824 13 AENPILLYMKGS-PKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW--------------------PTF 71 (115)
T ss_pred hcCCEEEEECCC-CCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC--------------------CCC
Confidence 468899999951 12348999999999999999999999999999999999988764 366
Q ss_pred CCCCEEEECCeEEechHHHHHHHHhCcHHHHhccCC
Q 041824 196 PVLPRVFVKGRYVGGAEEVLRIVEEGWFGELIEGIP 231 (289)
Q Consensus 196 ~~LPqIFI~G~~IGG~del~~L~E~G~L~~lL~~~~ 231 (289)
|||||||+||||+|++.+|+++|+|+++|+.+.
T Consensus 72 ---PQIFI~G~~IGG~ddl~~l~~~G~L~~lL~~~~ 104 (115)
T PRK10824 72 ---PQLWVDGELVGGCDIVIEMYQRGELQQLIKETA 104 (115)
T ss_pred ---CeEEECCEEEcChHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999998654
No 8
>PRK10638 glutaredoxin 3; Provisional
Probab=99.83 E-value=6.5e-20 Score=140.64 Aligned_cols=83 Identities=25% Similarity=0.455 Sum_probs=76.2
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCC
Q 041824 117 ENKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPP 196 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~ 196 (289)
|.+|+||+++ +|++|++|+.+|+.+||+|+++||+.+++.++++.++.|.. ++
T Consensus 1 m~~v~ly~~~------~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~--------------------~v- 53 (83)
T PRK10638 1 MANVEIYTKA------TCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRT--------------------TV- 53 (83)
T ss_pred CCcEEEEECC------CChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCC--------------------Cc-
Confidence 3579999999 99999999999999999999999999988888988877643 45
Q ss_pred CCCEEEECCeEEechHHHHHHHHhCcHHHHhc
Q 041824 197 VLPRVFVKGRYVGGAEEVLRIVEEGWFGELIE 228 (289)
Q Consensus 197 ~LPqIFI~G~~IGG~del~~L~E~G~L~~lL~ 228 (289)
|+|||||++|||++++.+|+++|+|.++|+
T Consensus 54 --P~i~~~g~~igG~~~~~~~~~~g~l~~~~~ 83 (83)
T PRK10638 54 --PQIFIDAQHIGGCDDLYALDARGGLDPLLK 83 (83)
T ss_pred --CEEEECCEEEeCHHHHHHHHHcCCHHHHhC
Confidence 999999999999999999999999999985
No 9
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.82 E-value=4.5e-20 Score=144.54 Aligned_cols=85 Identities=22% Similarity=0.361 Sum_probs=75.2
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCC
Q 041824 116 GENKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLP 195 (289)
Q Consensus 116 ~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv 195 (289)
.+++||||+++.. ...+|++|.+|+++|+++||+|+++||..|++++++|+++.|.. ++
T Consensus 6 ~~~~vvvf~k~~~-~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~--------------------tv 64 (90)
T cd03028 6 KENPVVLFMKGTP-EEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWP--------------------TF 64 (90)
T ss_pred ccCCEEEEEcCCC-CCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCC--------------------CC
Confidence 4688999998521 23399999999999999999999999999999999999987753 55
Q ss_pred CCCCEEEECCeEEechHHHHHHHHhCcHH
Q 041824 196 PVLPRVFVKGRYVGGAEEVLRIVEEGWFG 224 (289)
Q Consensus 196 ~~LPqIFI~G~~IGG~del~~L~E~G~L~ 224 (289)
|+|||||++|||++++++||++|+|+
T Consensus 65 ---P~vfi~g~~iGG~~~l~~l~~~g~L~ 90 (90)
T cd03028 65 ---PQLYVNGELVGGCDIVKEMHESGELQ 90 (90)
T ss_pred ---CEEEECCEEEeCHHHHHHHHHcCCcC
Confidence 99999999999999999999999984
No 10
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.82 E-value=6.6e-20 Score=138.25 Aligned_cols=79 Identities=29% Similarity=0.507 Sum_probs=73.4
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLP 199 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LP 199 (289)
|+||+++ +|++|.+|+++|+++||+|+++||+++++.++++.++.|.. ++ |
T Consensus 1 v~ly~~~------~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~--------------------~v---P 51 (79)
T TIGR02181 1 VTIYTKP------YCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRR--------------------TV---P 51 (79)
T ss_pred CEEEecC------CChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCC--------------------Cc---C
Confidence 6899999 99999999999999999999999999999999998876632 45 9
Q ss_pred EEEECCeEEechHHHHHHHHhCcHHHHh
Q 041824 200 RVFVKGRYVGGAEEVLRIVEEGWFGELI 227 (289)
Q Consensus 200 qIFI~G~~IGG~del~~L~E~G~L~~lL 227 (289)
+|||+|++|||++++.+|+++|+|+++|
T Consensus 52 ~i~i~g~~igg~~~~~~~~~~g~l~~~l 79 (79)
T TIGR02181 52 QIFIGDVHVGGCDDLYALDREGKLDPLL 79 (79)
T ss_pred EEEECCEEEcChHHHHHHHHcCChhhhC
Confidence 9999999999999999999999999886
No 11
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.78 E-value=2e-18 Score=127.97 Aligned_cols=75 Identities=29% Similarity=0.499 Sum_probs=67.9
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
+|+||+++ +|++|.+|+++|+++||+|+++||+++++.++++.+..|.. .++
T Consensus 1 ~i~ly~~~------~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~-------------------~~v--- 52 (75)
T cd03418 1 KVEIYTKP------NCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGR-------------------RTV--- 52 (75)
T ss_pred CEEEEeCC------CChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCC-------------------Ccc---
Confidence 58999999 99999999999999999999999999988888888776642 134
Q ss_pred CEEEECCeEEechHHHHHHHHhC
Q 041824 199 PRVFVKGRYVGGAEEVLRIVEEG 221 (289)
Q Consensus 199 PqIFI~G~~IGG~del~~L~E~G 221 (289)
|+|||+|++|||++++++|+++|
T Consensus 53 P~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 53 PQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEECCEEEeChHHHHHHHhCc
Confidence 99999999999999999999987
No 12
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.77 E-value=2.4e-18 Score=128.60 Aligned_cols=73 Identities=25% Similarity=0.432 Sum_probs=67.2
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCC
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPV 197 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~ 197 (289)
.+|+||+++ +|++|++|+++|+.+||+|+++||.+++..+++|+++++.. ++
T Consensus 1 ~~v~ly~~~------~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~--------------------~v-- 52 (73)
T cd03027 1 GRVTIYSRL------GCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSS--------------------VV-- 52 (73)
T ss_pred CEEEEEecC------CChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCC--------------------Cc--
Confidence 369999999 99999999999999999999999999999999999987643 45
Q ss_pred CCEEEECCeEEechHHHHHHHH
Q 041824 198 LPRVFVKGRYVGGAEEVLRIVE 219 (289)
Q Consensus 198 LPqIFI~G~~IGG~del~~L~E 219 (289)
|+|||||++|||++||.+|+|
T Consensus 53 -P~v~i~~~~iGg~~~~~~~~~ 73 (73)
T cd03027 53 -PQIFFNEKLVGGLTDLKSLEE 73 (73)
T ss_pred -CEEEECCEEEeCHHHHHhhcC
Confidence 999999999999999999874
No 13
>PTZ00062 glutaredoxin; Provisional
Probab=99.75 E-value=5.3e-18 Score=152.64 Aligned_cols=91 Identities=18% Similarity=0.329 Sum_probs=79.8
Q ss_pred CCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCC
Q 041824 115 DGENKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPL 194 (289)
Q Consensus 115 ~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~t 194 (289)
-..++||||+++.+ ...+|++|++++++|+.+||+|.++||..|++.+++|+++.|. .+
T Consensus 110 i~~~~Vvvf~Kg~~-~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~--------------------~T 168 (204)
T PTZ00062 110 IRNHKILLFMKGSK-TFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW--------------------PT 168 (204)
T ss_pred HhcCCEEEEEccCC-CCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC--------------------CC
Confidence 45789999999411 1238999999999999999999999999999999999988664 36
Q ss_pred CCCCCEEEECCeEEechHHHHHHHHhCcHHHHhcc
Q 041824 195 PPVLPRVFVKGRYVGGAEEVLRIVEEGWFGELIEG 229 (289)
Q Consensus 195 v~~LPqIFI~G~~IGG~del~~L~E~G~L~~lL~~ 229 (289)
+ |||||||++|||+|++++|+++|+|+++|..
T Consensus 169 v---PqVfI~G~~IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 169 Y---PQLYVNGELIGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred C---CeEEECCEEEcChHHHHHHHHcCChhhhhhh
Confidence 6 9999999999999999999999999999864
No 14
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=6.8e-18 Score=137.84 Aligned_cols=91 Identities=24% Similarity=0.472 Sum_probs=73.8
Q ss_pred CCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCC
Q 041824 115 DGENKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPL 194 (289)
Q Consensus 115 ~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~t 194 (289)
..+++||||+++ +|++|.++|.+|..+++.+..++++.++.-. |+++.+... ++..+
T Consensus 11 i~~~~VVifSKs------~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~-eiq~~l~~~----------------tg~~t 67 (104)
T KOG1752|consen 11 ISENPVVIFSKS------SCPYCHRAKELLSDLGVNPKVVELDEDEDGS-EIQKALKKL----------------TGQRT 67 (104)
T ss_pred hhcCCEEEEECC------cCchHHHHHHHHHhCCCCCEEEEccCCCCcH-HHHHHHHHh----------------cCCCC
Confidence 457899999999 9999999999999999999888887764322 444443321 22335
Q ss_pred CCCCCEEEECCeEEechHHHHHHHHhCcHHHHhccCC
Q 041824 195 PPVLPRVFVKGRYVGGAEEVLRIVEEGWFGELIEGIP 231 (289)
Q Consensus 195 v~~LPqIFI~G~~IGG~del~~L~E~G~L~~lL~~~~ 231 (289)
+ |+|||+|++|||.+++++||++|+|.++|+.+.
T Consensus 68 v---P~vFI~Gk~iGG~~dl~~lh~~G~L~~~l~~~~ 101 (104)
T KOG1752|consen 68 V---PNVFIGGKFIGGASDLMALHKSGELVPLLKEAG 101 (104)
T ss_pred C---CEEEECCEEEcCHHHHHHHHHcCCHHHHHHHhh
Confidence 5 999999999999999999999999999998753
No 15
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.72 E-value=4.4e-17 Score=122.18 Aligned_cols=79 Identities=24% Similarity=0.558 Sum_probs=67.6
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCc--EEEEEcCCC---hhHHHHHHHHHcccccccCCCCCcchhhccCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVA--VSERDVSMD---RGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPL 194 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~--y~ErDVs~d---~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~t 194 (289)
|++|+++ +|++|++++.+|++++++ |..+||+.+ .+.++++.++.|.. +
T Consensus 1 V~~f~~~------~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~--------------------~ 54 (84)
T TIGR02180 1 VVVFSKS------YCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQR--------------------T 54 (84)
T ss_pred CEEEECC------CChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCC--------------------C
Confidence 6899999 999999999999999999 888888764 34455666655432 4
Q ss_pred CCCCCEEEECCeEEechHHHHHHHHhCcHHHHh
Q 041824 195 PPVLPRVFVKGRYVGGAEEVLRIVEEGWFGELI 227 (289)
Q Consensus 195 v~~LPqIFI~G~~IGG~del~~L~E~G~L~~lL 227 (289)
+ |+|||||++|||++++.+|+++|+|+++|
T Consensus 55 v---P~v~i~g~~igg~~~~~~~~~~g~l~~~~ 84 (84)
T TIGR02180 55 V---PNIFINGKFIGGCSDLLALYKSGKLAELL 84 (84)
T ss_pred C---CeEEECCEEEcCHHHHHHHHHcCChhhhC
Confidence 4 99999999999999999999999999886
No 16
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.7e-17 Score=125.09 Aligned_cols=76 Identities=30% Similarity=0.501 Sum_probs=64.8
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCCh--hHHHHHHHHHcccccccCCCCCcchhhccCCCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDR--GFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPP 196 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~--~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~ 196 (289)
.|+||+++ +||||.+||++|+++||.|+++|+.++. +.++.+++..|.+ ++
T Consensus 2 ~v~iyt~~------~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~--------------------tv- 54 (80)
T COG0695 2 NVTIYTKP------GCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQR--------------------TV- 54 (80)
T ss_pred CEEEEECC------CCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCC--------------------Cc-
Confidence 58999999 9999999999999999999999999987 4444444433432 56
Q ss_pred CCCEEEECCeEEechHHHHHHHHhCcH
Q 041824 197 VLPRVFVKGRYVGGAEEVLRIVEEGWF 223 (289)
Q Consensus 197 ~LPqIFI~G~~IGG~del~~L~E~G~L 223 (289)
|||||||++|||.+++.+++..|.|
T Consensus 55 --P~I~i~~~~igg~~d~~~~~~~~~l 79 (80)
T COG0695 55 --PQIFIGGKHVGGCDDLDALEAKGKL 79 (80)
T ss_pred --CEEEECCEEEeCcccHHHHHhhccC
Confidence 9999999999999999999988876
No 17
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.69 E-value=1.3e-16 Score=119.56 Aligned_cols=79 Identities=27% Similarity=0.575 Sum_probs=67.8
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCC---hhHHHHHHHHHcccccccCCCCCcchhhccCCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMD---RGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLP 195 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d---~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv 195 (289)
+|++|++. +|++|.+|+.+|+++++.|.++|++.+ .+.+++++++.|.. ++
T Consensus 1 ~v~~y~~~------~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~--------------------~~ 54 (82)
T cd03419 1 PVVVFSKS------YCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQR--------------------TV 54 (82)
T ss_pred CEEEEEcC------CCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCC--------------------CC
Confidence 58999999 999999999999999999998888765 34466677665532 44
Q ss_pred CCCCEEEECCeEEechHHHHHHHHhCcHHHH
Q 041824 196 PVLPRVFVKGRYVGGAEEVLRIVEEGWFGEL 226 (289)
Q Consensus 196 ~~LPqIFI~G~~IGG~del~~L~E~G~L~~l 226 (289)
|+|||+|++|||++++.+|+++|+|+++
T Consensus 55 ---P~v~~~g~~igg~~~~~~~~~~g~l~~~ 82 (82)
T cd03419 55 ---PNVFIGGKFIGGCDDLMALHKSGKLVKL 82 (82)
T ss_pred ---CeEEECCEEEcCHHHHHHHHHcCCccCC
Confidence 9999999999999999999999999764
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.68 E-value=1.9e-16 Score=117.82 Aligned_cols=70 Identities=23% Similarity=0.449 Sum_probs=60.6
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
+|+||+++ +|++|.+||++|+++||+|+++||+.+. ..++++.+.|.. ++
T Consensus 2 ~v~lys~~------~Cp~C~~ak~~L~~~~i~~~~~~v~~~~-~~~~~~~~~g~~--------------------~v--- 51 (72)
T cd03029 2 SVSLFTKP------GCPFCARAKAALQENGISYEEIPLGKDI-TGRSLRAVTGAM--------------------TV--- 51 (72)
T ss_pred eEEEEECC------CCHHHHHHHHHHHHcCCCcEEEECCCCh-hHHHHHHHhCCC--------------------Cc---
Confidence 69999999 9999999999999999999999999876 345666665532 45
Q ss_pred CEEEECCeEEechHHHHHHH
Q 041824 199 PRVFVKGRYVGGAEEVLRIV 218 (289)
Q Consensus 199 PqIFI~G~~IGG~del~~L~ 218 (289)
|+|||||++|||+++|.++.
T Consensus 52 P~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 52 PQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred CeEEECCEEEeCHHHHHHHh
Confidence 99999999999999998864
No 19
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.68 E-value=1.3e-16 Score=129.25 Aligned_cols=96 Identities=20% Similarity=0.335 Sum_probs=74.0
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHc-ccccccCCCCCcchhhccCCCCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMM-RRRRRSSSSNNNEEEAESSVQPLPPV 197 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg-~~~~~~~~s~~~~~~g~~t~~~tv~~ 197 (289)
.|.||+||++|.++.-..+.++..||++++|+|+++||++|++.|++|++..| ..+ .+ ....+.
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~--------------~~-~~~~~l 66 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEK--------------DP-GNGKPL 66 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCC--------------S--TSTT--
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhcccccc--------------CC-CCCCCC
Confidence 38899999999999999999999999999999999999999999999999885 110 00 001123
Q ss_pred CCEEEECCeEEechHHHHHHHHhCcHHHHhcc
Q 041824 198 LPRVFVKGRYVGGAEEVLRIVEEGWFGELIEG 229 (289)
Q Consensus 198 LPqIFI~G~~IGG~del~~L~E~G~L~~lL~~ 229 (289)
+||||+|++|+|++|++.+++|+++|.++|+-
T Consensus 67 pPqiF~~~~Y~Gdye~f~ea~E~~~L~~fL~L 98 (99)
T PF04908_consen 67 PPQIFNGDEYCGDYEDFEEANENGELEEFLKL 98 (99)
T ss_dssp S-EEEETTEEEEEHHHHHHHHCTT-HHHHHT-
T ss_pred CCEEEeCCEEEeeHHHHHHHHhhCHHHHHhCc
Confidence 49999999999999999999999999999963
No 20
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.67 E-value=5.4e-16 Score=118.24 Aligned_cols=74 Identities=24% Similarity=0.417 Sum_probs=62.7
Q ss_pred CCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCC
Q 041824 115 DGENKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPL 194 (289)
Q Consensus 115 ~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~t 194 (289)
..+++|+||+++ +|++|.+||++|+.+||+|+++||+.+... ++++++.|.. +
T Consensus 5 ~~~~~V~ly~~~------~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~~--------------------~ 57 (79)
T TIGR02190 5 RKPESVVVFTKP------GCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGAT--------------------T 57 (79)
T ss_pred CCCCCEEEEECC------CCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCCC--------------------C
Confidence 357889999999 999999999999999999999999877543 5566655532 4
Q ss_pred CCCCCEEEECCeEEechHHHHHHH
Q 041824 195 PPVLPRVFVKGRYVGGAEEVLRIV 218 (289)
Q Consensus 195 v~~LPqIFI~G~~IGG~del~~L~ 218 (289)
+ |+|||||++|||+++|.++.
T Consensus 58 v---P~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 58 V---PQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred c---CeEEECCEEEcCHHHHHHHh
Confidence 5 99999999999999998753
No 21
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.66 E-value=7.1e-16 Score=110.35 Aligned_cols=72 Identities=33% Similarity=0.662 Sum_probs=65.7
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
+|+||+++ +|++|++|+.+|++++++|.++|+..+.+.+++|+++.|.. ++
T Consensus 1 ~v~ly~~~------~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~--------------------~~--- 51 (72)
T cd02066 1 KVVVFSKS------TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWP--------------------TV--- 51 (72)
T ss_pred CEEEEECC------CCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCC--------------------Cc---
Confidence 58999999 99999999999999999999999999988888998887642 44
Q ss_pred CEEEECCeEEechHHHHHHHH
Q 041824 199 PRVFVKGRYVGGAEEVLRIVE 219 (289)
Q Consensus 199 PqIFI~G~~IGG~del~~L~E 219 (289)
|+||+||++|||++++++|++
T Consensus 52 P~~~~~~~~igg~~~~~~~~~ 72 (72)
T cd02066 52 PQIFINGEFIGGYDDLKALHE 72 (72)
T ss_pred CEEEECCEEEecHHHHHHhhC
Confidence 999999999999999999874
No 22
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.66 E-value=7.8e-16 Score=118.31 Aligned_cols=75 Identities=23% Similarity=0.310 Sum_probs=65.9
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIEN-----FGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQP 193 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~-----~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~ 193 (289)
+|+||+++ +|++|.+|+++|++ .+|+|+++||..+...+++|.++.+.. ..
T Consensus 2 ~v~iy~~~------~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~------------------~~ 57 (85)
T PRK11200 2 FVVIFGRP------GCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKP------------------VE 57 (85)
T ss_pred EEEEEeCC------CChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCC------------------CC
Confidence 69999999 99999999999999 899999999998877788888876642 12
Q ss_pred CCCCCCEEEECCeEEechHHHHHHHHh
Q 041824 194 LPPVLPRVFVKGRYVGGAEEVLRIVEE 220 (289)
Q Consensus 194 tv~~LPqIFI~G~~IGG~del~~L~E~ 220 (289)
++ |||||||++|||+++|.++++.
T Consensus 58 ~v---P~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 58 TV---PQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred cC---CEEEECCEEEcCHHHHHHHHHH
Confidence 44 9999999999999999998864
No 23
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.65 E-value=8.2e-16 Score=119.48 Aligned_cols=75 Identities=24% Similarity=0.387 Sum_probs=63.9
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhC-----CCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENF-----GVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPL 194 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~-----gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~t 194 (289)
|+||+++ +|++|.+||++|+.+ ++.|+++||..+...+++|.++.|.. ..+
T Consensus 2 V~vys~~------~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~------------------~~t 57 (86)
T TIGR02183 2 VVIFGRP------GCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKP------------------VET 57 (86)
T ss_pred EEEEeCC------CCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCC------------------CCC
Confidence 8999999 999999999999998 46799999997766677888876641 114
Q ss_pred CCCCCEEEECCeEEechHHHHHHHHhC
Q 041824 195 PPVLPRVFVKGRYVGGAEEVLRIVEEG 221 (289)
Q Consensus 195 v~~LPqIFI~G~~IGG~del~~L~E~G 221 (289)
+ |||||||++|||+++|.++++++
T Consensus 58 V---P~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 58 V---PQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred c---CeEEECCEEecCHHHHHHHHHhc
Confidence 4 99999999999999999998774
No 24
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=6.9e-16 Score=125.52 Aligned_cols=92 Identities=24% Similarity=0.354 Sum_probs=82.3
Q ss_pred CCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhCC-CcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCC
Q 041824 115 DGENKVVIYTTTLRGIRKTYEACKAAKSVIENFG-VAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQP 193 (289)
Q Consensus 115 ~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~g-V~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~ 193 (289)
...++||||.+... -.+.|.++.+|.+||...| |+|..+||-.|+++|+.|++... |+
T Consensus 12 i~~n~VvLFMKGtp-~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~--------------------WP 70 (105)
T COG0278 12 IKENPVVLFMKGTP-EFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSN--------------------WP 70 (105)
T ss_pred hhcCceEEEecCCC-CCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcC--------------------CC
Confidence 35789999999844 4458999999999999999 89999999999999999998743 66
Q ss_pred CCCCCCEEEECCeEEechHHHHHHHHhCcHHHHhccC
Q 041824 194 LPPVLPRVFVKGRYVGGAEEVLRIVEEGWFGELIEGI 230 (289)
Q Consensus 194 tv~~LPqIFI~G~~IGG~del~~L~E~G~L~~lL~~~ 230 (289)
|. ||+||+|++|||.|-+.+|+++|+|+++|+..
T Consensus 71 T~---PQLyi~GEfvGG~DIv~Em~q~GELq~~l~~~ 104 (105)
T COG0278 71 TF---PQLYVNGEFVGGCDIVREMYQSGELQTLLKEA 104 (105)
T ss_pred CC---ceeeECCEEeccHHHHHHHHHcchHHHHHHhc
Confidence 76 99999999999999999999999999999753
No 25
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.57 E-value=1.2e-14 Score=104.83 Aligned_cols=60 Identities=38% Similarity=0.657 Sum_probs=55.5
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLP 199 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LP 199 (289)
|+||++. +|++|.+++++|+++||+|+++||+.+++.+++|+++.|.. ++ |
T Consensus 1 V~vy~~~------~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~--------------------~~---P 51 (60)
T PF00462_consen 1 VVVYTKP------GCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVR--------------------TV---P 51 (60)
T ss_dssp EEEEEST------TSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSS--------------------SS---S
T ss_pred cEEEEcC------CCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCC--------------------cc---C
Confidence 7999999 99999999999999999999999999999999999987643 45 9
Q ss_pred EEEECCeEE
Q 041824 200 RVFVKGRYV 208 (289)
Q Consensus 200 qIFI~G~~I 208 (289)
+|||||++|
T Consensus 52 ~v~i~g~~I 60 (60)
T PF00462_consen 52 QVFIDGKFI 60 (60)
T ss_dssp EEEETTEEE
T ss_pred EEEECCEEC
Confidence 999999987
No 26
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.55 E-value=1.9e-14 Score=140.89 Aligned_cols=93 Identities=20% Similarity=0.232 Sum_probs=72.5
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCC
Q 041824 117 ENKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPP 196 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~ 196 (289)
+++|+||+++ +||+|.+||++|+.+||+|+++||+.++...+.+.+. +.. .+...+|..++
T Consensus 1 m~~V~vys~~------~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~-~~~-----------~~~~~~g~~tv- 61 (410)
T PRK12759 1 MVEVRIYTKT------NCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEV-NKN-----------ILLVEEHIRTV- 61 (410)
T ss_pred CCcEEEEeCC------CCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHH-hhc-----------cccccCCCCcc-
Confidence 4689999999 9999999999999999999999999877554433332 210 00001233355
Q ss_pred CCCEEEECCeEEechHHHHHHHHhCcHHHHhccCCC
Q 041824 197 VLPRVFVKGRYVGGAEEVLRIVEEGWFGELIEGIPI 232 (289)
Q Consensus 197 ~LPqIFI~G~~IGG~del~~L~E~G~L~~lL~~~~~ 232 (289)
|||||||++|||++++++ .+|+|.++|++.+-
T Consensus 62 --P~ifi~~~~igGf~~l~~--~~g~l~~~~~~~~~ 93 (410)
T PRK12759 62 --PQIFVGDVHIGGYDNLMA--RAGEVIARVKGSSL 93 (410)
T ss_pred --CeEEECCEEEeCchHHHH--HhCCHHHHhcCCcc
Confidence 999999999999999987 99999999998653
No 27
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.4e-13 Score=125.62 Aligned_cols=92 Identities=17% Similarity=0.302 Sum_probs=82.2
Q ss_pred CCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCC
Q 041824 115 DGENKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPL 194 (289)
Q Consensus 115 ~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~t 194 (289)
+..++|+||.++.+ -...|.+.+++..||+.++|+|...||..|.+.|+-|+++.. |+|
T Consensus 136 v~a~~v~lFmKG~p-~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSd--------------------WPT 194 (227)
T KOG0911|consen 136 VKAKPVMLFMKGTP-EEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSD--------------------WPT 194 (227)
T ss_pred cccCeEEEEecCCC-CcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcC--------------------CCC
Confidence 56788999999844 456899999999999999999999999999999988888743 667
Q ss_pred CCCCCEEEECCeEEechHHHHHHHHhCcHHHHhccC
Q 041824 195 PPVLPRVFVKGRYVGGAEEVLRIVEEGWFGELIEGI 230 (289)
Q Consensus 195 v~~LPqIFI~G~~IGG~del~~L~E~G~L~~lL~~~ 230 (289)
. |||||+|++|||.|-+.+||++|+|...|+.+
T Consensus 195 f---PQlyI~GEFiGGlDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 195 F---PQLYVKGEFIGGLDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred c---cceeECCEeccCcHHHHHHhhcccHHHHhhcC
Confidence 6 99999999999999999999999999998753
No 28
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.42 E-value=1.2e-12 Score=101.50 Aligned_cols=65 Identities=25% Similarity=0.263 Sum_probs=57.8
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
+|+||+++ +|++|.++|.+|+++||+|+++||+.+++.+++++.. |.. ++
T Consensus 2 ~v~lYt~~------~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~-g~~--------------------~v--- 51 (81)
T PRK10329 2 RITIYTRN------DCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQ-GFR--------------------QL--- 51 (81)
T ss_pred EEEEEeCC------CCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-CCC--------------------Cc---
Confidence 69999999 9999999999999999999999999999888888763 432 45
Q ss_pred CEEEECCeEEechHH
Q 041824 199 PRVFVKGRYVGGAEE 213 (289)
Q Consensus 199 PqIFI~G~~IGG~de 213 (289)
|+|+|++..|+||+.
T Consensus 52 Pvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 52 PVVIAGDLSWSGFRP 66 (81)
T ss_pred CEEEECCEEEecCCH
Confidence 999999999999954
No 29
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.41 E-value=7.8e-13 Score=98.84 Aligned_cols=64 Identities=19% Similarity=0.338 Sum_probs=56.2
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLP 199 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LP 199 (289)
|+||+++ +|++|++||++|+++||+|+++||..+++.++++++. |.. ++ |
T Consensus 1 v~ly~~~------~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~-g~~--------------------~v---P 50 (72)
T TIGR02194 1 ITVYSKN------NCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQ-GFR--------------------QV---P 50 (72)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-CCc--------------------cc---C
Confidence 6899999 9999999999999999999999999999888888754 532 45 9
Q ss_pred EEEECCe-EEechHH
Q 041824 200 RVFVKGR-YVGGAEE 213 (289)
Q Consensus 200 qIFI~G~-~IGG~de 213 (289)
+|||+|. +|||++.
T Consensus 51 ~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 51 VIVADGDLSWSGFRP 65 (72)
T ss_pred EEEECCCcEEeccCH
Confidence 9999775 9999965
No 30
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.13 E-value=5.1e-10 Score=80.47 Aligned_cols=66 Identities=30% Similarity=0.449 Sum_probs=57.7
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
+|+||+++ +|++|++++.+|+.+++.|.++|++.++..++++.+..|.. ++
T Consensus 1 ~i~lf~~~------~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~--------------------~v--- 51 (74)
T TIGR02196 1 KVKVYTTP------WCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQR--------------------GV--- 51 (74)
T ss_pred CEEEEcCC------CChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCC--------------------cc---
Confidence 48999999 99999999999999999999999998888788887776642 34
Q ss_pred CEEEECCeEEechHH
Q 041824 199 PRVFVKGRYVGGAEE 213 (289)
Q Consensus 199 PqIFI~G~~IGG~de 213 (289)
|.++++|+.++|++.
T Consensus 52 P~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 52 PVIVIGHKIIVGFDP 66 (74)
T ss_pred cEEEECCEEEeeCCH
Confidence 999999999988854
No 31
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.08 E-value=7.9e-10 Score=79.44 Aligned_cols=66 Identities=30% Similarity=0.427 Sum_probs=57.7
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
+|++|+++ +|++|.+++.+|+.++++|..+|++.+...+++++++.+.. .+
T Consensus 1 ~v~l~~~~------~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~--------------------~v--- 51 (73)
T cd02976 1 EVTVYTKP------DCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYR--------------------SV--- 51 (73)
T ss_pred CEEEEeCC------CChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCc--------------------cc---
Confidence 48999999 99999999999999999999999998888888888764422 34
Q ss_pred CEEEECCeEEechHH
Q 041824 199 PRVFVKGRYVGGAEE 213 (289)
Q Consensus 199 PqIFI~G~~IGG~de 213 (289)
|.|+++|+.|+|++.
T Consensus 52 P~i~~~~~~i~g~~~ 66 (73)
T cd02976 52 PVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEECCEEEecCCH
Confidence 999999999999875
No 32
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.87 E-value=2.1e-08 Score=73.55 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=53.7
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHH-cccccccCCCCCcchhhccCCCCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELM-MRRRRRSSSSNNNEEEAESSVQPLPPV 197 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~ll-g~~~~~~~~s~~~~~~g~~t~~~tv~~ 197 (289)
+|+||+++ +|++|++++.+|+.++++|+++|++.++...++++++. +.. ++
T Consensus 1 ~v~ly~~~------~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~--------------------~v-- 52 (77)
T TIGR02200 1 TITVYGTT------WCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNM--------------------TV-- 52 (77)
T ss_pred CEEEEECC------CChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCc--------------------ee--
Confidence 58999999 99999999999999999999999998887777877774 322 34
Q ss_pred CCEEEE-CCeEEechH
Q 041824 198 LPRVFV-KGRYVGGAE 212 (289)
Q Consensus 198 LPqIFI-~G~~IGG~d 212 (289)
|+|++ +|+.+....
T Consensus 53 -P~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 53 -PTVKFADGSFLTNPS 67 (77)
T ss_pred -CEEEECCCeEecCCC
Confidence 99976 667776543
No 33
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1.1e-08 Score=83.63 Aligned_cols=100 Identities=17% Similarity=0.299 Sum_probs=84.6
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
-|.||++|.+|.+........+..||+...|.|+++||.+..+.++++.......++. . .|.+.+
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~--------~----~GnplP--- 67 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRP--------L----NGNPLP--- 67 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcC--------C----CCCCCC---
Confidence 5889999999999999999999999999999999999999888887777655322110 0 234566
Q ss_pred CEEEECCeEEechHHHHHHHHhCcHHHHhccCCCc
Q 041824 199 PRVFVKGRYVGGAEEVLRIVEEGWFGELIEGIPIR 233 (289)
Q Consensus 199 PqIFI~G~~IGG~del~~L~E~G~L~~lL~~~~~~ 233 (289)
||||-+++|.|+||.+.+..|++.|.++|+.+|..
T Consensus 68 Pqifn~d~Y~Gdye~F~ea~E~ntl~eFL~lap~~ 102 (108)
T KOG4023|consen 68 PQIFNGDQYCGDYELFFEAVEQNTLQEFLGLAPPP 102 (108)
T ss_pred cccccCccccccHHHHHHHHHHHHHHHHHccCCCc
Confidence 99999999999999999999999999999988765
No 34
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.65 E-value=6.8e-08 Score=70.16 Aligned_cols=58 Identities=12% Similarity=0.192 Sum_probs=46.9
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhC-----CCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENF-----GVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQP 193 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~-----gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~ 193 (289)
+|++|+++ +|++|.+++.+|+.+ +|.|.++|++.++ ++.+..|..
T Consensus 2 ~v~~f~~~------~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~----~l~~~~~i~-------------------- 51 (67)
T cd02973 2 NIEVFVSP------TCPYCPDAVQAANRIAALNPNISAEMIDAAEFP----DLADEYGVM-------------------- 51 (67)
T ss_pred EEEEEECC------CCCCcHHHHHHHHHHHHhCCceEEEEEEcccCH----hHHHHcCCc--------------------
Confidence 58999999 999999999999875 7999999998764 344444432
Q ss_pred CCCCCCEEEECCeEEe
Q 041824 194 LPPVLPRVFVKGRYVG 209 (289)
Q Consensus 194 tv~~LPqIFI~G~~IG 209 (289)
++ |+|||+|++++
T Consensus 52 ~v---Pti~i~~~~~~ 64 (67)
T cd02973 52 SV---PAIVINGKVEF 64 (67)
T ss_pred cc---CEEEECCEEEE
Confidence 34 99999999876
No 35
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.53 E-value=8.2e-07 Score=66.92 Aligned_cols=72 Identities=10% Similarity=0.139 Sum_probs=56.9
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLP 199 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LP 199 (289)
++||+.+ .|++|.+|+.+|+.+||+|+++||..+....+++.++.+.. ++ |
T Consensus 2 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~--------------------~v---P 52 (77)
T cd03041 2 LELYEFE------GSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKV--------------------QV---P 52 (77)
T ss_pred ceEecCC------CCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCC--------------------cc---c
Confidence 6799999 99999999999999999999999986655566776553321 45 9
Q ss_pred EEEE--CCeEEechHHHHHHHHh
Q 041824 200 RVFV--KGRYVGGAEEVLRIVEE 220 (289)
Q Consensus 200 qIFI--~G~~IGG~del~~L~E~ 220 (289)
.+.. +|..+.+...+.+..++
T Consensus 53 ~l~~~~~~~~l~es~~I~~yL~~ 75 (77)
T cd03041 53 YLVDPNTGVQMFESADIVKYLFK 75 (77)
T ss_pred EEEeCCCCeEEEcHHHHHHHHHH
Confidence 9876 36788888888776543
No 36
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.44 E-value=2.4e-06 Score=63.64 Aligned_cols=69 Identities=14% Similarity=0.284 Sum_probs=53.6
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
+|.||+.. .|++|++|+.+|+.+||+|++++++. ..+.+++ ..+. .++
T Consensus 1 ~i~Ly~~~------~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~~-~~~~--------------------~~v--- 48 (77)
T cd03040 1 KITLYQYK------TCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEIK-WSSY--------------------KKV--- 48 (77)
T ss_pred CEEEEEcC------CCHHHHHHHHHHHHCCCceEEEECCc--hhHHHHH-HhCC--------------------Ccc---
Confidence 58899999 99999999999999999999999854 3344543 2221 134
Q ss_pred CEEEEC----CeEEechHHHHHHHH
Q 041824 199 PRVFVK----GRYVGGAEEVLRIVE 219 (289)
Q Consensus 199 PqIFI~----G~~IGG~del~~L~E 219 (289)
|.++++ |+.|.....+.+..+
T Consensus 49 P~l~~~~~~~~~~l~eS~~I~~yL~ 73 (77)
T cd03040 49 PILRVESGGDGQQLVDSSVIISTLK 73 (77)
T ss_pred CEEEECCCCCccEEEcHHHHHHHHH
Confidence 999987 788888888876554
No 37
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.34 E-value=1.8e-06 Score=60.13 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=52.6
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCE
Q 041824 121 VIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPR 200 (289)
Q Consensus 121 VVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPq 200 (289)
.+|+.. .|++|.+++.+|+.+||+|+.+++..+....+++++..+. ..+|.
T Consensus 2 ~ly~~~------~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~P~ 52 (71)
T cd00570 2 KLYYFP------GSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-----------------------GKVPV 52 (71)
T ss_pred EEEeCC------CCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-----------------------CCCCE
Confidence 578888 8999999999999999999999998654333344443321 24499
Q ss_pred EEECCeEEechHHHHHH
Q 041824 201 VFVKGRYVGGAEEVLRI 217 (289)
Q Consensus 201 IFI~G~~IGG~del~~L 217 (289)
|+++|..++....+.+.
T Consensus 53 l~~~~~~~~es~~I~~y 69 (71)
T cd00570 53 LEDGGLVLTESLAILEY 69 (71)
T ss_pred EEECCEEEEcHHHHHHH
Confidence 99999999998877654
No 38
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.32 E-value=3.6e-06 Score=61.84 Aligned_cols=68 Identities=10% Similarity=0.190 Sum_probs=52.0
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCE
Q 041824 121 VIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPR 200 (289)
Q Consensus 121 VVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPq 200 (289)
.+|+.. .|++|.++|.+|..+||+|+++++..+.. ..+ .+..+. .++ |.
T Consensus 2 ~Ly~~~------~~p~~~rvr~~L~~~gl~~~~~~~~~~~~-~~~-~~~~~~--------------------~~v---P~ 50 (71)
T cd03037 2 KLYIYE------HCPFCVKARMIAGLKNIPVEQIILQNDDE-ATP-IRMIGA--------------------KQV---PI 50 (71)
T ss_pred ceEecC------CCcHhHHHHHHHHHcCCCeEEEECCCCch-HHH-HHhcCC--------------------Ccc---CE
Confidence 588888 99999999999999999999999875432 122 222221 134 99
Q ss_pred EEEC-CeEEechHHHHHHHH
Q 041824 201 VFVK-GRYVGGAEEVLRIVE 219 (289)
Q Consensus 201 IFI~-G~~IGG~del~~L~E 219 (289)
|+++ |..+++...+.+..+
T Consensus 51 L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 51 LEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred EEeCCCeEeehHHHHHHHHh
Confidence 9997 899999999887654
No 39
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.29 E-value=1.2e-06 Score=71.42 Aligned_cols=47 Identities=23% Similarity=0.438 Sum_probs=43.4
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcc
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMR 172 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~ 172 (289)
|.||+++ .|++|++|+++|+++||+|+++|+..++..++||.++++.
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~ 47 (111)
T cd03036 1 LKFYEYP------KCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEK 47 (111)
T ss_pred CEEEECC------CCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHH
Confidence 5799999 9999999999999999999999999998888899887764
No 40
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.28 E-value=1.1e-06 Score=70.13 Aligned_cols=48 Identities=25% Similarity=0.359 Sum_probs=44.0
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHccc
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRR 173 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~ 173 (289)
|+||+++ +|++|++|+++|+++||+|+++||..++...++|+++++..
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 1 ITIYGNP------NCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred CEEEECC------CCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 5799999 99999999999999999999999998888888999887653
No 41
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.16 E-value=1.3e-05 Score=62.25 Aligned_cols=75 Identities=11% Similarity=0.109 Sum_probs=57.0
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCC
Q 041824 114 PDGENKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQP 193 (289)
Q Consensus 114 p~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~ 193 (289)
|-....+.||+.. .|++|.+++.+|+.+|++|+.++++... ..+++.+..+..
T Consensus 13 ~~~~~~~~Ly~~~------~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~~-------------------- 65 (89)
T cd03055 13 PPVPGIIRLYSMR------FCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQG-------------------- 65 (89)
T ss_pred CCCCCcEEEEeCC------CCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCCC--------------------
Confidence 3445679999999 9999999999999999999999987643 224455443321
Q ss_pred CCCCCCEEEEC-CeEEechHHHHHHH
Q 041824 194 LPPVLPRVFVK-GRYVGGAEEVLRIV 218 (289)
Q Consensus 194 tv~~LPqIFI~-G~~IGG~del~~L~ 218 (289)
.+ |.++++ |..|.....+.++.
T Consensus 66 ~v---PvL~~~~g~~l~eS~aI~~yL 88 (89)
T cd03055 66 KV---PALEIDEGKVVYESLIICEYL 88 (89)
T ss_pred Cc---CEEEECCCCEEECHHHHHHhh
Confidence 34 999998 88888887776654
No 42
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.15 E-value=4.7e-06 Score=70.08 Aligned_cols=46 Identities=20% Similarity=0.474 Sum_probs=42.6
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHc
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg 171 (289)
|+||+++ +|++|++|+++|+++||+|+++||..++..++||++++.
T Consensus 2 i~iY~~~------~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~ 47 (131)
T PRK01655 2 VTLFTSP------SCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILR 47 (131)
T ss_pred EEEEeCC------CChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHH
Confidence 7899999 999999999999999999999999999888888887764
No 43
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.10 E-value=2e-05 Score=57.47 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=53.0
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLP 199 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LP 199 (289)
++||+.. .|++|++++.+|+.+|++|++++++... ..+++++.... ..+ |
T Consensus 1 ~~ly~~~------~~~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~--------------------~~v---P 50 (73)
T cd03059 1 MTLYSGP------DDVYSHRVRIVLAEKGVSVEIIDVDPDN-PPEDLAELNPY--------------------GTV---P 50 (73)
T ss_pred CEEEECC------CChhHHHHHHHHHHcCCccEEEEcCCCC-CCHHHHhhCCC--------------------CCC---C
Confidence 4689999 9999999999999999999999887542 23455554321 134 9
Q ss_pred EEEECCeEEechHHHHHHHH
Q 041824 200 RVFVKGRYVGGAEEVLRIVE 219 (289)
Q Consensus 200 qIFI~G~~IGG~del~~L~E 219 (289)
.+..+|..+.....+.+..+
T Consensus 51 ~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 51 TLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred EEEECCEEEEcHHHHHHHHH
Confidence 99888888888777776554
No 44
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.03 E-value=1.1e-05 Score=66.03 Aligned_cols=47 Identities=23% Similarity=0.412 Sum_probs=42.9
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcc
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMR 172 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~ 172 (289)
|.||+.+ +|++|++|+++|+++||+|+++|+..++..++||.+++..
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~ 47 (117)
T TIGR01617 1 IKVYGSP------NCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSL 47 (117)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHH
Confidence 5799999 9999999999999999999999999988888888877653
No 45
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.00 E-value=1.6e-05 Score=64.98 Aligned_cols=46 Identities=28% Similarity=0.520 Sum_probs=42.0
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHc
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg 171 (289)
|.||+.+ .|+.|++|+++|+.+||.|+++|+..++-.++||++.+.
T Consensus 2 i~iY~~~------~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 2 IKLYTSP------SCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEEeCC------CCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence 7899999 999999999999999999999999988777888887765
No 46
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=97.92 E-value=5.7e-05 Score=55.67 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=50.3
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCE
Q 041824 121 VIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPR 200 (289)
Q Consensus 121 VVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPq 200 (289)
++|+.. .|++|.+++.+|+.+|++|+.++|+.... .++++++.... ++ |.
T Consensus 2 ~ly~~~------~~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~np~~--------------------~v---P~ 51 (71)
T cd03060 2 ILYSFR------RCPYAMRARMALLLAGITVELREVELKNK-PAEMLAASPKG--------------------TV---PV 51 (71)
T ss_pred EEEecC------CCcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHCCCC--------------------CC---CE
Confidence 689998 99999999999999999999999876422 34565543321 45 99
Q ss_pred EEEC-CeEEechHHHHH
Q 041824 201 VFVK-GRYVGGAEEVLR 216 (289)
Q Consensus 201 IFI~-G~~IGG~del~~ 216 (289)
+..+ |..|.....+.+
T Consensus 52 L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 52 LVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEECCCcEEecHHHHHH
Confidence 9995 888876666554
No 47
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.92 E-value=2e-05 Score=66.50 Aligned_cols=46 Identities=26% Similarity=0.510 Sum_probs=42.0
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHc
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg 171 (289)
|+||+.+ .|+.|++|+++|+.+||+|+++|+..++-.++||++++.
T Consensus 2 i~iY~~~------~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~ 47 (131)
T PRK12559 2 VVLYTTA------SCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILR 47 (131)
T ss_pred EEEEeCC------CChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHH
Confidence 7899999 999999999999999999999999988877788877754
No 48
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=97.91 E-value=3.8e-05 Score=55.64 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=49.7
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCCh--hHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 121 VIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDR--GFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 121 VVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~--~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
.||+.. .|++|.+++.+|+.+|++|++++++... ...+++.+..... .+
T Consensus 2 ~Ly~~~------~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~--------------------~v--- 52 (74)
T cd03051 2 KLYDSP------TAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAG--------------------TV--- 52 (74)
T ss_pred EEEeCC------CCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCC--------------------CC---
Confidence 689998 9999999999999999999988887532 2334555543321 34
Q ss_pred CEEEE-CCeEEechHHHHHH
Q 041824 199 PRVFV-KGRYVGGAEEVLRI 217 (289)
Q Consensus 199 PqIFI-~G~~IGG~del~~L 217 (289)
|.+.+ +|..+.....+.+.
T Consensus 53 P~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 53 PVLELDDGTVITESVAICRY 72 (74)
T ss_pred CEEEeCCCCEEecHHHHHHH
Confidence 99997 66777766666554
No 49
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.91 E-value=2.1e-05 Score=66.44 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=41.0
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHc
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg 171 (289)
|+||+.+ .|+.|++|+++|+++||+|+++|+..++-.++||.+++.
T Consensus 2 i~iY~~~------~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~ 47 (132)
T PRK13344 2 IKIYTIS------SCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILT 47 (132)
T ss_pred EEEEeCC------CCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHH
Confidence 7899999 999999999999999999999999988777777776653
No 50
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.89 E-value=2.2e-05 Score=63.81 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=42.1
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHc
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg 171 (289)
|+||+.+ +|..|++|+++|+++||+|+++|+..++--.+||++++.
T Consensus 1 i~iy~~~------~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 1 ITLYGIK------NCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA 46 (105)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence 6799999 999999999999999999999999998877888887765
No 51
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.86 E-value=7.6e-05 Score=55.78 Aligned_cols=68 Identities=13% Similarity=0.211 Sum_probs=55.1
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEE
Q 041824 122 IYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRV 201 (289)
Q Consensus 122 VYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqI 201 (289)
+|... .|++|.+|+.+|+.+||+|+.+++..... .+++.++.+.. ++ |.+
T Consensus 1 Ly~~~------~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~~--------------------~v---PvL 50 (75)
T PF13417_consen 1 LYGFP------GSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPKG--------------------KV---PVL 50 (75)
T ss_dssp EEEET------TSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTTS--------------------BS---SEE
T ss_pred CCCcC------CChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcccc--------------------cc---eEE
Confidence 57888 99999999999999999999999986543 56666654321 34 999
Q ss_pred EECCeEEechHHHHHHHH
Q 041824 202 FVKGRYVGGAEEVLRIVE 219 (289)
Q Consensus 202 FI~G~~IGG~del~~L~E 219 (289)
..||..|.+...+.+..+
T Consensus 51 ~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 51 VDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EETTEEEESHHHHHHHHH
T ss_pred EECCEEEeCHHHHHHHHH
Confidence 999999999988887654
No 52
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=97.81 E-value=9.4e-05 Score=54.19 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=52.3
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCC--hhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMD--RGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPV 197 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d--~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~ 197 (289)
+.||+.. .|++|++++.+|+.+|++|++++++.. ....+++.+..... .+
T Consensus 1 ~~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~--------------------~v-- 52 (74)
T cd03045 1 IDLYYLP------GSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQH--------------------TV-- 52 (74)
T ss_pred CEEEeCC------CCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCC--------------------CC--
Confidence 3689998 999999999999999999999888752 22345666543221 34
Q ss_pred CCEEEECCeEEechHHHHHHH
Q 041824 198 LPRVFVKGRYVGGAEEVLRIV 218 (289)
Q Consensus 198 LPqIFI~G~~IGG~del~~L~ 218 (289)
|.+.++|..|-....+.+..
T Consensus 53 -P~l~~~~~~l~es~aI~~yL 72 (74)
T cd03045 53 -PTLVDNGFVLWESHAILIYL 72 (74)
T ss_pred -CEEEECCEEEEcHHHHHHHH
Confidence 99998988887777666543
No 53
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.77 E-value=4.7e-05 Score=62.82 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=41.7
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHc
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg 171 (289)
.|+||+.+ .|..|++|+++|+++||+|+++|+..++--++||++++.
T Consensus 1 ~i~iy~~p------~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~ 47 (113)
T cd03033 1 DIIFYEKP------GCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG 47 (113)
T ss_pred CEEEEECC------CCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence 37899999 999999999999999999999999987766777777654
No 54
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.70 E-value=0.00033 Score=53.84 Aligned_cols=53 Identities=25% Similarity=0.391 Sum_probs=42.3
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhC----CCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENF----GVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPL 194 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~----gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~t 194 (289)
+|++|++. .|.-|..|+.+|+.. ++.++++||+.|++ |.++.+. .
T Consensus 1 ~l~l~~k~------~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~~---------------------~ 49 (81)
T PF05768_consen 1 TLTLYTKP------GCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYGY---------------------R 49 (81)
T ss_dssp -EEEEE-S------SSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSCT---------------------S
T ss_pred CEEEEcCC------CCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhcC---------------------C
Confidence 58999999 999999999999964 46789999997754 6666553 3
Q ss_pred CCCCCEEEECC
Q 041824 195 PPVLPRVFVKG 205 (289)
Q Consensus 195 v~~LPqIFI~G 205 (289)
+ |.|+++|
T Consensus 50 I---PVl~~~~ 57 (81)
T PF05768_consen 50 I---PVLHIDG 57 (81)
T ss_dssp T---SEEEETT
T ss_pred C---CEEEEcC
Confidence 4 9999999
No 55
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.68 E-value=0.00021 Score=52.90 Aligned_cols=36 Identities=36% Similarity=0.547 Sum_probs=29.1
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHh----CC--CcEEEEEcCCCh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIEN----FG--VAVSERDVSMDR 160 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~----~g--V~y~ErDVs~d~ 160 (289)
+|+||+++ +|++|+.++.+|+. ++ +.+..+|+..++
T Consensus 2 ~v~~f~~~------~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~ 43 (82)
T TIGR00411 2 KIELFTSP------TCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP 43 (82)
T ss_pred EEEEEECC------CCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH
Confidence 58899999 99999999999864 44 667788887654
No 56
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.66 E-value=0.00026 Score=51.31 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=50.6
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCCh--hHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 121 VIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDR--GFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 121 VVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~--~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
.+|+.. .|++|.+++.+|+.+|++|++++|+... ...+++.+.... ..+
T Consensus 2 ~Ly~~~------~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-----------------------~~v 52 (73)
T cd03056 2 KLYGFP------LSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-----------------------GEV 52 (73)
T ss_pred EEEeCC------CCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-----------------------CCC
Confidence 688888 9999999999999999999999987532 233455543221 134
Q ss_pred CEEEECCeEEechHHHHHH
Q 041824 199 PRVFVKGRYVGGAEEVLRI 217 (289)
Q Consensus 199 PqIFI~G~~IGG~del~~L 217 (289)
|.+..+|..|.....+.+.
T Consensus 53 P~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 53 PVLELDGRVLAESNAILVY 71 (73)
T ss_pred CEEEECCEEEEcHHHHHHH
Confidence 9999999888777666543
No 57
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.35 E-value=0.0019 Score=47.55 Aligned_cols=62 Identities=13% Similarity=0.186 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeE
Q 041824 128 RGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRY 207 (289)
Q Consensus 128 rgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~ 207 (289)
.++...|++|.+++.+|+.+||+|+.+++.... .... ..+|.+.++|+.
T Consensus 10 ~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~---------~~p~----------------------g~vP~l~~~g~~ 58 (72)
T cd03054 10 FGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW---------RSPT----------------------GKLPFLELNGEK 58 (72)
T ss_pred CCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc---------cCCC----------------------cccCEEEECCEE
Confidence 455568999999999999999999999997532 1111 134999999999
Q ss_pred EechHHHHHHHHh
Q 041824 208 VGGAEEVLRIVEE 220 (289)
Q Consensus 208 IGG~del~~L~E~ 220 (289)
+.+...+.+..++
T Consensus 59 l~es~~I~~yL~~ 71 (72)
T cd03054 59 IADSEKIIEYLKK 71 (72)
T ss_pred EcCHHHHHHHHhh
Confidence 9999888776543
No 58
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00041 Score=57.87 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=42.0
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHc
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg 171 (289)
.|.||..+ .|.-|++|+++|+++||+|+++|+..++--++||++++.
T Consensus 2 ~itiy~~p------~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~ 48 (117)
T COG1393 2 MITIYGNP------NCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILS 48 (117)
T ss_pred eEEEEeCC------CChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHH
Confidence 38999999 999999999999999999999999987767777777764
No 59
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.27 E-value=0.0018 Score=47.76 Aligned_cols=71 Identities=10% Similarity=0.036 Sum_probs=50.5
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLP 199 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LP 199 (289)
+.+|+.. .|++|.+++.+|+.+|++|++++++... ...+++++.... ..+ |
T Consensus 1 ~~Ly~~~------~sp~~~~v~~~l~~~gl~~~~~~~~~~~-~~~~~~~~~p~~-------------------~~v---P 51 (74)
T cd03058 1 VKLLGAW------ASPFVLRVRIALALKGVPYEYVEEDLGN-KSELLLASNPVH-------------------KKI---P 51 (74)
T ss_pred CEEEECC------CCchHHHHHHHHHHcCCCCEEEEeCccc-CCHHHHHhCCCC-------------------CCC---C
Confidence 3688888 8999999999999999999998886531 123344332110 134 9
Q ss_pred EEEECCeEEechHHHHHHHH
Q 041824 200 RVFVKGRYVGGAEEVLRIVE 219 (289)
Q Consensus 200 qIFI~G~~IGG~del~~L~E 219 (289)
.+..+|.-+.....+.+..+
T Consensus 52 ~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 52 VLLHNGKPICESLIIVEYID 71 (74)
T ss_pred EEEECCEEeehHHHHHHHHH
Confidence 99888888887777766544
No 60
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.25 E-value=0.00055 Score=55.88 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=39.8
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHc
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg 171 (289)
|+||+.+ .|.-|++|+++|+++|++|+++|+..++=-.+||.+++.
T Consensus 1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~ 46 (112)
T cd03034 1 ITIYHNP------RCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLA 46 (112)
T ss_pred CEEEECC------CCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHH
Confidence 5799999 999999999999999999999999887655666666654
No 61
>PHA02125 thioredoxin-like protein
Probab=97.25 E-value=0.0012 Score=49.66 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=29.2
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHc
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg 171 (289)
|++|+++ +|+.|+.++.+|+... |..+||+.+. ..++.+..+
T Consensus 2 iv~f~a~------wC~~Ck~~~~~l~~~~--~~~~~vd~~~--~~~l~~~~~ 43 (75)
T PHA02125 2 IYLFGAE------WCANCKMVKPMLANVE--YTYVDVDTDE--GVELTAKHH 43 (75)
T ss_pred EEEEECC------CCHhHHHHHHHHHHHh--heEEeeeCCC--CHHHHHHcC
Confidence 7899999 9999999999998654 4445554333 124554444
No 62
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.25 E-value=0.0024 Score=51.79 Aligned_cols=59 Identities=17% Similarity=0.312 Sum_probs=38.6
Q ss_pred HHHHHHH-hhhcCCCCCCCcEEEEE-ecCCCCCCCCHHHHHHHHHHHhCC-----CcEEEEEcCCChhHHHHHHHHHc
Q 041824 101 IKSVLER-FERICPPDGENKVVIYT-TTLRGIRKTYEACKAAKSVIENFG-----VAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 101 ~~~~l~~-f~~~~pp~~~~kVVVYt-tSLrgvR~tC~~C~~ak~iL~~~g-----V~y~ErDVs~d~~~reEL~~llg 171 (289)
+...|.. |.+.= .....||||. ++ +|++|+.++.+|+... |.|..+|++.++ ++.+..+
T Consensus 7 ~~~~~~~~~~~~l--~~~~~vvv~f~a~------wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~~ 72 (113)
T cd02975 7 DRKALKEEFFKEM--KNPVDLVVFSSKE------GCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKYG 72 (113)
T ss_pred HHHHHHHHHHHHh--CCCeEEEEEeCCC------CCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHcC
Confidence 3445554 54431 3344577774 56 9999999999998653 678889988654 4554444
No 63
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.24 E-value=0.0023 Score=47.10 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=52.9
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCCh--hHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDR--GFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPV 197 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~--~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~ 197 (289)
+.+|+.. .|++|.+++.+|+..|++|+.+.++... ...++++++... ..
T Consensus 2 ~~Ly~~~------~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-----------------------~~ 52 (76)
T cd03053 2 LKLYGAA------MSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-----------------------GQ 52 (76)
T ss_pred eEEEeCC------CChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-----------------------CC
Confidence 5788888 8999999999999999999998887532 122344443221 23
Q ss_pred CCEEEECCeEEechHHHHHHHH
Q 041824 198 LPRVFVKGRYVGGAEEVLRIVE 219 (289)
Q Consensus 198 LPqIFI~G~~IGG~del~~L~E 219 (289)
+|.+..+|..|.....+.+..+
T Consensus 53 vP~l~~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 53 IPALEDGDLKLFESRAITRYLA 74 (76)
T ss_pred CCEEEECCEEEEcHHHHHHHHh
Confidence 4999999988888888777654
No 64
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.24 E-value=0.00058 Score=56.02 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=40.8
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHc
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg 171 (289)
|.||+.+ .|.-|++|+++|+++|+.|+++|+..++=-.+||.+++.
T Consensus 1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~ 46 (114)
T TIGR00014 1 VTIYHNP------RCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFA 46 (114)
T ss_pred CEEEECC------CCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHH
Confidence 5799999 999999999999999999999999987766777777664
No 65
>PRK10026 arsenate reductase; Provisional
Probab=97.22 E-value=0.00066 Score=58.49 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=42.9
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHc
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg 171 (289)
..|.||+.+ .|.-|++|+++|+++|++|+++|+..++--.+||+.++.
T Consensus 2 ~~i~iY~~p------~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~ 49 (141)
T PRK10026 2 SNITIYHNP------ACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIA 49 (141)
T ss_pred CEEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHH
Confidence 468999999 999999999999999999999999888766777777764
No 66
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.21 E-value=0.0014 Score=63.04 Aligned_cols=84 Identities=15% Similarity=0.355 Sum_probs=61.8
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCC
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPV 197 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~ 197 (289)
=++|+|--- |||+|.+||++|+=+||+|..+.|+ +-.|+|++- .+...
T Consensus 89 L~l~LyQye------tCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk~------------------------SsykK 136 (370)
T KOG3029|consen 89 LDLVLYQYE------TCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIKW------------------------SSYKK 136 (370)
T ss_pred ceEEEEeec------cCchHHHHHHHHhhcCCceEEEEec--chhhhhccc------------------------ccccc
Confidence 479999998 9999999999999999999999986 444555542 12334
Q ss_pred CCEEEECCeEEechHHHHHHH------HhCcHHHHhccCCCc
Q 041824 198 LPRVFVKGRYVGGAEEVLRIV------EEGWFGELIEGIPIR 233 (289)
Q Consensus 198 LPqIFI~G~~IGG~del~~L~------E~G~L~~lL~~~~~~ 233 (289)
+|.+.|+|+-+-...-+..+. ..-.|.++++-.|..
T Consensus 137 VPil~~~Geqm~dSsvIIs~laTyLq~~~q~l~eiiq~yPa~ 178 (370)
T KOG3029|consen 137 VPILLIRGEQMVDSSVIISLLATYLQDKRQDLGEIIQMYPAT 178 (370)
T ss_pred ccEEEeccceechhHHHHHHHHHHhccCCCCHHHHHHhcccc
Confidence 499999888665554444433 334588888877754
No 67
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.19 E-value=0.0011 Score=52.25 Aligned_cols=61 Identities=15% Similarity=0.247 Sum_probs=45.8
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHHHHHhC-----CCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccC
Q 041824 116 GENKVVIYTTTLRGIRKTYEACKAAKSVIENF-----GVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESS 190 (289)
Q Consensus 116 ~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~-----gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t 190 (289)
+.-+|.+|+++ +|++|..++++++.. +|.|..+|++..+ ++.+..+-
T Consensus 12 ~pv~i~~F~~~------~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~----e~a~~~~V------------------ 63 (89)
T cd03026 12 GPINFETYVSL------SCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQ----DEVEERGI------------------ 63 (89)
T ss_pred CCEEEEEEECC------CCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCH----HHHHHcCC------------------
Confidence 34469999998 999999999988764 7899999998654 33333343
Q ss_pred CCCCCCCCCEEEECCeEEe
Q 041824 191 VQPLPPVLPRVFVKGRYVG 209 (289)
Q Consensus 191 ~~~tv~~LPqIFI~G~~IG 209 (289)
..+|.++|||+.++
T Consensus 64 -----~~vPt~vidG~~~~ 77 (89)
T cd03026 64 -----MSVPAIFLNGELFG 77 (89)
T ss_pred -----ccCCEEEECCEEEE
Confidence 23499999998765
No 68
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.13 E-value=0.0021 Score=48.30 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=51.7
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChh--HHHHHHHHHcccccccCCCCCcchhhccCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRG--FKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPV 197 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~--~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~ 197 (289)
+++|... .+++|.+++.+|+.+|++|+.+.+..... ..+++.++.... .+
T Consensus 1 ~~ly~~~------~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g--------------------~v-- 52 (73)
T cd03052 1 LVLYHWT------QSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTG--------------------EV-- 52 (73)
T ss_pred CEEecCC------CCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCC--------------------CC--
Confidence 4688888 89999999999999999999988865322 234566553321 45
Q ss_pred CCEEEECCeEEechHHHHHH
Q 041824 198 LPRVFVKGRYVGGAEEVLRI 217 (289)
Q Consensus 198 LPqIFI~G~~IGG~del~~L 217 (289)
|.+..||..|.....+.+.
T Consensus 53 -P~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 53 -PVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred -CEEEECCEEEEcHHHHHHH
Confidence 9999899888777776654
No 69
>PRK10853 putative reductase; Provisional
Probab=97.12 E-value=0.0008 Score=55.92 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=40.9
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHc
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg 171 (289)
|+||+.+ .|.-|++|+++|+++||+|+++|+-.++--.+||++++.
T Consensus 2 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~ 47 (118)
T PRK10853 2 VTLYGIK------NCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFID 47 (118)
T ss_pred EEEEcCC------CCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHH
Confidence 7899999 999999999999999999999999887766777777664
No 70
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.12 E-value=0.00089 Score=56.43 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=39.7
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHH
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELM 170 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~ll 170 (289)
.|+||..+ .|.-|++|+++|+++||+|+++|+-.++--++||+.++
T Consensus 2 ~i~iY~~p------~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l 47 (126)
T TIGR01616 2 TIIFYEKP------GCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYF 47 (126)
T ss_pred eEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHH
Confidence 47899999 99999999999999999999999987765566666554
No 71
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.08 E-value=0.0069 Score=48.52 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=55.8
Q ss_pred cEEEEEecCCC--CCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCC
Q 041824 119 KVVIYTTTLRG--IRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPP 196 (289)
Q Consensus 119 kVVVYttSLrg--vR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~ 196 (289)
.|-+|.+.-++ -...|++|++++.+|..+||+|+.++|++... -+.+.++.-.. .+
T Consensus 5 ~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP~g--------------------~v- 62 (91)
T cd03061 5 EIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAPGT--------------------QP- 62 (91)
T ss_pred cEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCCCC--------------------CC-
Confidence 46677665432 24689999999999999999999988876432 13444443211 34
Q ss_pred CCCEEEECCeEEechHHHHHHHHh
Q 041824 197 VLPRVFVKGRYVGGAEEVLRIVEE 220 (289)
Q Consensus 197 ~LPqIFI~G~~IGG~del~~L~E~ 220 (289)
|.+..+|..|...+.+.++.++
T Consensus 63 --PvL~~~~~~i~eS~~I~eYLde 84 (91)
T cd03061 63 --PFLLYNGEVKTDNNKIEEFLEE 84 (91)
T ss_pred --CEEEECCEEecCHHHHHHHHHH
Confidence 9999999999888888776653
No 72
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.04 E-value=0.0026 Score=46.12 Aligned_cols=68 Identities=12% Similarity=0.213 Sum_probs=48.9
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCCh--hHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 121 VIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDR--GFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 121 VVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~--~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
.+|+.. .++.|.+++.+|+.+||+|+.+.+++.. ...+++++.... ..+
T Consensus 2 ~L~~~~------~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-----------------------~~v 52 (73)
T cd03042 2 ILYSYF------RSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-----------------------GLV 52 (73)
T ss_pred EEecCC------CCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-----------------------CCC
Confidence 577777 7789999999999999999998887632 223455544221 234
Q ss_pred CEEEECCeEEechHHHHHH
Q 041824 199 PRVFVKGRYVGGAEEVLRI 217 (289)
Q Consensus 199 PqIFI~G~~IGG~del~~L 217 (289)
|.+..+|..+.....+.+.
T Consensus 53 P~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 53 PTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred CEEEECCEEEEcHHHHHHH
Confidence 9999999888777666554
No 73
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.04 E-value=0.0021 Score=48.69 Aligned_cols=31 Identities=26% Similarity=0.543 Sum_probs=26.9
Q ss_pred EEEEEecCCCCCCCCHHHHHH----HHHHHhCCCcEEEEEcC
Q 041824 120 VVIYTTTLRGIRKTYEACKAA----KSVIENFGVAVSERDVS 157 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~a----k~iL~~~gV~y~ErDVs 157 (289)
|.+|+ + +|+.|+.+ ++++++++++++.++|+
T Consensus 3 i~~~a-~------~C~~C~~~~~~~~~~~~e~~~~~~~~~v~ 37 (76)
T TIGR00412 3 IQIYG-T------GCANCQMTEKNVKKAVEELGIDAEFEKVT 37 (76)
T ss_pred EEEEC-C------CCcCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 66776 7 99999999 67888899999999998
No 74
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.95 E-value=0.005 Score=46.52 Aligned_cols=55 Identities=24% Similarity=0.441 Sum_probs=37.3
Q ss_pred EEEEEecCCCCCCCCHHHHHHHH----HHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKS----VIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLP 195 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~----iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv 195 (289)
|.+ .++ +|++|.++.+ ++..+++.++.+|+. + .+++ ...|-
T Consensus 3 I~v-~~~------~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-~---~~~~-~~ygv----------------------- 47 (76)
T PF13192_consen 3 IKV-FSP------GCPYCPELVQLLKEAAEELGIEVEIIDIE-D---FEEI-EKYGV----------------------- 47 (76)
T ss_dssp EEE-ECS------SCTTHHHHHHHHHHHHHHTTEEEEEEETT-T---HHHH-HHTT------------------------
T ss_pred EEE-eCC------CCCCcHHHHHHHHHHHHhcCCeEEEEEcc-C---HHHH-HHcCC-----------------------
Confidence 555 466 8999996666 556789999999983 3 2344 33342
Q ss_pred CCCCEEEECCe--EEe
Q 041824 196 PVLPRVFVKGR--YVG 209 (289)
Q Consensus 196 ~~LPqIFI~G~--~IG 209 (289)
..+|.|+|||+ +.|
T Consensus 48 ~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 48 MSVPALVINGKVVFVG 63 (76)
T ss_dssp SSSSEEEETTEEEEES
T ss_pred CCCCEEEECCEEEEEe
Confidence 34499999998 445
No 75
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=96.87 E-value=0.0074 Score=44.82 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=50.5
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLP 199 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LP 199 (289)
+++|... .++.|.+++.+|...|++|+.+.++.+ ...++++.... ...+|
T Consensus 2 ~~Ly~~~------~~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~p-----------------------~~~vP 51 (73)
T cd03076 2 YTLTYFP------VRGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKML-----------------------FGQLP 51 (73)
T ss_pred cEEEEeC------CcchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccCC-----------------------CCCCC
Confidence 5788877 689999999999999999999988752 22333332211 12349
Q ss_pred EEEECCeEEechHHHHHHH
Q 041824 200 RVFVKGRYVGGAEEVLRIV 218 (289)
Q Consensus 200 qIFI~G~~IGG~del~~L~ 218 (289)
.+..+|..|.....+.+..
T Consensus 52 ~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 52 CFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred EEEECCEEEEcHHHHHHHH
Confidence 9999999888887777654
No 76
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=96.80 E-value=0.0064 Score=44.57 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=47.2
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCE
Q 041824 121 VIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPR 200 (289)
Q Consensus 121 VVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPq 200 (289)
++|... .++.|.+++.+|+.+|++|+.+.++.......++.... + ...+|.
T Consensus 2 ~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~-------------p----------~~~vP~ 52 (72)
T cd03039 2 KLTYFN------IRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTL-------------P----------FGQLPV 52 (72)
T ss_pred EEEEEc------CcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCC-------------c----------CCCCCE
Confidence 577777 77999999999999999999998864321111111111 1 123499
Q ss_pred EEECCeEEechHHHHHH
Q 041824 201 VFVKGRYVGGAEEVLRI 217 (289)
Q Consensus 201 IFI~G~~IGG~del~~L 217 (289)
+..+|..|.....+.+.
T Consensus 53 L~~~~~~l~es~aI~~y 69 (72)
T cd03039 53 LEIDGKKLTQSNAILRY 69 (72)
T ss_pred EEECCEEEEecHHHHHH
Confidence 99999888877776654
No 77
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.78 E-value=0.0056 Score=44.89 Aligned_cols=67 Identities=12% Similarity=0.025 Sum_probs=47.5
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHh--CCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 121 VIYTTTLRGIRKTYEACKAAKSVIEN--FGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 121 VVYttSLrgvR~tC~~C~~ak~iL~~--~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
.+|... .|++|.+++.+|+. +|++|+.+.++.. ...+++.+.... ..+
T Consensus 2 ~Ly~~~------~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~--------------------~~v--- 51 (73)
T cd03049 2 KLLYSP------TSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNPL--------------------GKI--- 51 (73)
T ss_pred EEecCC------CCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCCC--------------------CCC---
Confidence 578877 89999999999999 8999999988742 122344443221 134
Q ss_pred CEEEE-CCeEEechHHHHHH
Q 041824 199 PRVFV-KGRYVGGAEEVLRI 217 (289)
Q Consensus 199 PqIFI-~G~~IGG~del~~L 217 (289)
|.+.. ||..|.....+.+.
T Consensus 52 P~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 52 PALVLDDGEALFDSRVICEY 71 (73)
T ss_pred CEEEECCCCEEECHHHHHhh
Confidence 99875 77777776666554
No 78
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=96.78 E-value=0.0079 Score=45.05 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=50.4
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCC--hhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMD--RGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPV 197 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d--~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~ 197 (289)
+.+|... . ++|.+++.+|+..|++|+.+.+... ....+++.++... ..+
T Consensus 2 ~~Ly~~~------~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~--------------------~~v-- 52 (81)
T cd03048 2 ITLYTHG------T-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN--------------------GRI-- 52 (81)
T ss_pred eEEEeCC------C-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC--------------------CCC--
Confidence 5788876 6 9999999999999999998777642 2234555554322 134
Q ss_pred CCEEEEC---CeEEechHHHHHHHH
Q 041824 198 LPRVFVK---GRYVGGAEEVLRIVE 219 (289)
Q Consensus 198 LPqIFI~---G~~IGG~del~~L~E 219 (289)
|.+..+ |..|.....+.+..+
T Consensus 53 -P~l~~~~~~g~~l~eS~aI~~yL~ 76 (81)
T cd03048 53 -PAIVDHNGTPLTVFESGAILLYLA 76 (81)
T ss_pred -CEEEeCCCCceEEEcHHHHHHHHH
Confidence 999887 788887777766543
No 79
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0039 Score=49.23 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=31.6
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMD 159 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d 159 (289)
+-++|.+. .||+|..+++.|++.+|+|+++||...
T Consensus 3 kp~lfgsn------~Cpdca~a~eyl~rl~v~yd~VeIt~S 37 (85)
T COG4545 3 KPKLFGSN------LCPDCAPAVEYLERLNVDYDFVEITES 37 (85)
T ss_pred Cceeeccc------cCcchHHHHHHHHHcCCCceeeehhhh
Confidence 34789999 999999999999999999999999753
No 80
>PRK10387 glutaredoxin 2; Provisional
Probab=96.75 E-value=0.0068 Score=52.54 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=51.5
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLP 199 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LP 199 (289)
+.+|+.. .|++|.+|+.+|+.+||+|+.++++.... ... .+..+. .++ |
T Consensus 1 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~~~~~~~-~~~-~~~~p~--------------------~~V---P 49 (210)
T PRK10387 1 MKLYIYD------HCPFCVKARMIFGLKNIPVELIVLANDDE-ATP-IRMIGQ--------------------KQV---P 49 (210)
T ss_pred CEEEeCC------CCchHHHHHHHHHHcCCCeEEEEcCCCch-hhH-HHhcCC--------------------ccc---c
Confidence 4689888 89999999999999999999999865432 112 122211 145 9
Q ss_pred EE-EECCeEEechHHHHHHHHh
Q 041824 200 RV-FVKGRYVGGAEEVLRIVEE 220 (289)
Q Consensus 200 qI-FI~G~~IGG~del~~L~E~ 220 (289)
.| ..+|..|.....+.+..++
T Consensus 50 vL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 50 ILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred eEEecCCeEecCHHHHHHHHHH
Confidence 98 5688999998888876654
No 81
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=96.65 E-value=0.0071 Score=53.58 Aligned_cols=68 Identities=12% Similarity=0.181 Sum_probs=50.3
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEE
Q 041824 122 IYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRV 201 (289)
Q Consensus 122 VYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqI 201 (289)
+|+.. .|++|.+|+.+|..+|++|+.+++..+.. ... .+..+. .++ |.+
T Consensus 2 Ly~~~------~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~-~~~np~--------------------g~v---P~l 50 (209)
T TIGR02182 2 LYIYD------HCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETP-IRMIGA--------------------KQV---PIL 50 (209)
T ss_pred eecCC------CCChHHHHHHHHHHcCCCeEEEECCCCcc-hhH-HHhcCC--------------------CCc---ceE
Confidence 67777 89999999999999999999998865432 111 222111 134 999
Q ss_pred E-ECCeEEechHHHHHHHHh
Q 041824 202 F-VKGRYVGGAEEVLRIVEE 220 (289)
Q Consensus 202 F-I~G~~IGG~del~~L~E~ 220 (289)
. .||..|.+...+.+..++
T Consensus 51 ~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 51 QKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred EeeCCeEeccHHHHHHHHHH
Confidence 7 788999999888886654
No 82
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.47 E-value=0.007 Score=48.85 Aligned_cols=43 Identities=28% Similarity=0.396 Sum_probs=31.2
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHc
Q 041824 123 YTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 123 YttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg 171 (289)
|..+ .|.-|++|+++|+++||.|+++|+..++--++||.+++.
T Consensus 1 Y~~~------~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~ 43 (110)
T PF03960_consen 1 YGNP------NCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLS 43 (110)
T ss_dssp EE-T------T-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHH
T ss_pred CcCC------CCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHH
Confidence 6666 999999999999999999999999987766677776654
No 83
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.42 E-value=0.003 Score=52.68 Aligned_cols=54 Identities=22% Similarity=0.584 Sum_probs=41.5
Q ss_pred cCCcccCCCCceeEeCCCCCCcceeeeccCCCCccccccCCccCcCCcccCCCCC
Q 041824 235 LKGVCQGCADVRFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLVLCPLCS 289 (289)
Q Consensus 235 ~~~~C~~Cgg~rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLvrCp~C~ 289 (289)
....|..|.|.+...|..|+|+-.+..... .......+|+.|+-.|.+.|+.|.
T Consensus 40 ~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~-g~~q~~~~C~~C~G~Gk~~C~~C~ 93 (111)
T PLN03165 40 NTQPCFPCSGTGAQVCRFCVGSGNVTVELG-GGEKEVSKCINCDGAGSLTCTTCQ 93 (111)
T ss_pred cCCCCCCCCCCCCcCCCCCcCcCeEEEEeC-CcEEEEEECCCCCCcceeeCCCCC
Confidence 356789998888889999999976654321 122346799999999999999983
No 84
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=96.30 E-value=0.035 Score=45.93 Aligned_cols=38 Identities=11% Similarity=0.123 Sum_probs=28.1
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHHHH----HhCCCcEEEEEcCCCh
Q 041824 117 ENKVVIYTTTLRGIRKTYEACKAAKSVI----ENFGVAVSERDVSMDR 160 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~~C~~ak~iL----~~~gV~y~ErDVs~d~ 160 (289)
+.-||.|+.+ ||++|+.+.-+| +..++++..+|++.+.
T Consensus 24 ~~~iv~f~~~------~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~ 65 (122)
T TIGR01295 24 ETATFFIGRK------TCPYCRKFSGTLSGVVAQTKAPIYYIDSENNG 65 (122)
T ss_pred CcEEEEEECC------CChhHHHHhHHHHHHHHhcCCcEEEEECCCcc
Confidence 3346666777 999999965555 4567889999998654
No 85
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=96.28 E-value=0.037 Score=41.14 Aligned_cols=69 Identities=13% Similarity=0.250 Sum_probs=49.5
Q ss_pred EEEEEec-CCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 120 VVIYTTT-LRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 120 VVVYttS-LrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
++||... -.+....+++|.+|+.+|+..|++|+.+.++.- .... . ..+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~--------~~~p--------------------~---g~v 50 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA--------KRSP--------------------K---GKL 50 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc--------cCCC--------------------C---CCC
Confidence 4556554 234455789999999999999999998888631 1111 1 234
Q ss_pred CEEEECCeEEechHHHHHHHH
Q 041824 199 PRVFVKGRYVGGAEEVLRIVE 219 (289)
Q Consensus 199 PqIFI~G~~IGG~del~~L~E 219 (289)
|.+..+|+.|.....+.+..+
T Consensus 51 Pvl~~~g~~l~eS~~I~~yL~ 71 (75)
T cd03080 51 PFIELNGEKIADSELIIDHLE 71 (75)
T ss_pred CEEEECCEEEcCHHHHHHHHH
Confidence 999999999998888777554
No 86
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=96.23 E-value=0.034 Score=41.12 Aligned_cols=71 Identities=10% Similarity=0.175 Sum_probs=49.9
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCCh--hHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDR--GFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPV 197 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~--~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~ 197 (289)
+++|... ..+.|++++.+|+..|++|+.+.++... ...+++.++... ..
T Consensus 1 ~~ly~~~------~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-----------------------~~ 51 (76)
T cd03050 1 LKLYYDL------MSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-----------------------GK 51 (76)
T ss_pred CEEeeCC------CChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-----------------------CC
Confidence 3588888 8899999999999999999988886422 122344443221 23
Q ss_pred CCEEEECCeEEechHHHHHHHH
Q 041824 198 LPRVFVKGRYVGGAEEVLRIVE 219 (289)
Q Consensus 198 LPqIFI~G~~IGG~del~~L~E 219 (289)
+|.+..+|..|-....+.+..+
T Consensus 52 vP~L~~~~~~l~eS~aI~~Yl~ 73 (76)
T cd03050 52 VPAIVDGDFTLAESVAILRYLA 73 (76)
T ss_pred CCEEEECCEEEEcHHHHHHHHH
Confidence 3999888887777666665543
No 87
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=96.20 E-value=0.015 Score=44.04 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=50.8
Q ss_pred EEEEec-CCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChh--HHHHHHHHHcccccccCCCCCcchhhccCCCCCCCC
Q 041824 121 VIYTTT-LRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRG--FKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPV 197 (289)
Q Consensus 121 VVYttS-LrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~--~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~ 197 (289)
.+|+.. ..+.+..+++|.+++.+|..+||+|+.+.++.... ..+++ .... . ..
T Consensus 2 ~~~~~~~~~~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p--------------------~---~~ 57 (84)
T cd03038 2 TLYDLAGKDPVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGG--------------------F---YT 57 (84)
T ss_pred eeEeccCCCCCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCC--------------------C---ce
Confidence 455442 23567789999999999999999999988875321 11122 1111 1 23
Q ss_pred CCEEEEC-CeEEechHHHHHHHH
Q 041824 198 LPRVFVK-GRYVGGAEEVLRIVE 219 (289)
Q Consensus 198 LPqIFI~-G~~IGG~del~~L~E 219 (289)
+|.+..+ |+.|.....+.+..+
T Consensus 58 vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 58 VPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred eCeEEECCCCEEeCHHHHHHHHH
Confidence 3999888 899988888877654
No 88
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.17 E-value=0.02 Score=37.25 Aligned_cols=40 Identities=28% Similarity=0.467 Sum_probs=32.8
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHH-----hCCCcEEEEEcCCChhHHHH
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIE-----NFGVAVSERDVSMDRGFKEE 165 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~-----~~gV~y~ErDVs~d~~~reE 165 (289)
|++|..+ +|++|.+++..|+ ..++.+..+|+.......+.
T Consensus 1 l~~~~~~------~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (69)
T cd01659 1 LVLFYAP------WCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKE 45 (69)
T ss_pred CEEEECC------CChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhH
Confidence 4677777 9999999999999 67899999999877654443
No 89
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.02 E-value=0.045 Score=40.73 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=48.0
Q ss_pred CCCCCCHHHHHHHHHHHhCCCcEEEEEcCCCh-hHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeE
Q 041824 129 GIRKTYEACKAAKSVIENFGVAVSERDVSMDR-GFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRY 207 (289)
Q Consensus 129 gvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~-~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~ 207 (289)
|.+..++++.+++-+|+.+||+|+.+.+.... ...+++++.... ..+|.+..+|..
T Consensus 5 ~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-----------------------g~vP~L~~~g~~ 61 (73)
T cd03043 5 GNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-----------------------GKVPVLVDGGIV 61 (73)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-----------------------CcCCEEEECCEE
Confidence 56779999999999999999999998887532 123444443221 234999999988
Q ss_pred EechHHHHHH
Q 041824 208 VGGAEEVLRI 217 (289)
Q Consensus 208 IGG~del~~L 217 (289)
|.....+.++
T Consensus 62 l~eS~aI~~Y 71 (73)
T cd03043 62 VWDSLAICEY 71 (73)
T ss_pred EEcHHHHHHH
Confidence 8777666553
No 90
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=95.99 E-value=0.039 Score=48.57 Aligned_cols=71 Identities=14% Similarity=0.194 Sum_probs=53.0
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCC
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPV 197 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~ 197 (289)
..+.+|+.. .|++|.+++-+|+..||+|+.+.|+.. ...+++.++.-. ..+
T Consensus 9 ~~~~Ly~~~------~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~--------------------g~V-- 59 (211)
T PRK09481 9 SVMTLFSGP------TDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPY--------------------QSV-- 59 (211)
T ss_pred CeeEEeCCC------CChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCC--------------------CCC--
Confidence 358899988 899999999999999999999988753 123455554221 134
Q ss_pred CCEEEECCeEEechHHHHHHH
Q 041824 198 LPRVFVKGRYVGGAEEVLRIV 218 (289)
Q Consensus 198 LPqIFI~G~~IGG~del~~L~ 218 (289)
|.+..+|..|--...+.+..
T Consensus 60 -PvL~~~g~~l~ES~AIl~YL 79 (211)
T PRK09481 60 -PTLVDRELTLYESRIIMEYL 79 (211)
T ss_pred -CEEEECCEEeeCHHHHHHHH
Confidence 99999998887776666544
No 91
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=95.96 E-value=0.036 Score=41.14 Aligned_cols=69 Identities=13% Similarity=0.024 Sum_probs=48.5
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChh-HHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCC
Q 041824 121 VIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRG-FKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLP 199 (289)
Q Consensus 121 VVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~-~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LP 199 (289)
.+|+.. .|++|.+++-+|+..|++|+.++|+...+ ..++++++... ..+ |
T Consensus 2 ~Ly~~~------~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~--------------------~~v---P 52 (75)
T cd03044 2 TLYTYP------GNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL--------------------GKV---P 52 (75)
T ss_pred eEecCC------CCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC--------------------CCC---C
Confidence 467777 88999999999999999999998886432 22445544221 134 9
Q ss_pred EEEEC-CeEEechHHHHHHH
Q 041824 200 RVFVK-GRYVGGAEEVLRIV 218 (289)
Q Consensus 200 qIFI~-G~~IGG~del~~L~ 218 (289)
.+..+ |..|-....+.++.
T Consensus 53 ~L~~~~g~~l~es~aI~~yL 72 (75)
T cd03044 53 AFEGADGFCLFESNAIAYYV 72 (75)
T ss_pred EEEcCCCCEEeeHHHHHHHH
Confidence 99884 77776666665543
No 92
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=95.74 E-value=0.058 Score=41.80 Aligned_cols=36 Identities=28% Similarity=0.520 Sum_probs=28.1
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHh------CCCcEEEEEcCCChh
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIEN------FGVAVSERDVSMDRG 161 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~------~gV~y~ErDVs~d~~ 161 (289)
+++|+++ +|+.|+.+..+|+. .++.|..+|++.+++
T Consensus 17 lv~f~a~------~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~ 58 (97)
T cd02949 17 LVLYTSP------TCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE 58 (97)
T ss_pred EEEEECC------CChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH
Confidence 4556666 99999999998876 457788999887654
No 93
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=95.70 E-value=0.047 Score=39.40 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=30.2
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEcCCChhH
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIEN-----FGVAVSERDVSMDRGF 162 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~-----~gV~y~ErDVs~d~~~ 162 (289)
+++|+++ +|+.|..++.+|+. .++.|..+|++.+..+
T Consensus 14 ll~~~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 55 (93)
T cd02947 14 VVDFWAP------WCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPEL 55 (93)
T ss_pred EEEEECC------CChhHHHhhHHHHHHHHHCCCceEEEEECCCChhH
Confidence 5566666 99999999999988 7889999999875543
No 94
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=95.68 E-value=0.053 Score=39.56 Aligned_cols=69 Identities=7% Similarity=0.017 Sum_probs=47.4
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCCh--hHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 121 VIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDR--GFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 121 VVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~--~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
.+|+.. . ..+.+++.+|+..|++|+.+.++... ...+++.++... ..+
T Consensus 2 ~l~~~~------~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-----------------------~~v 51 (76)
T cd03046 2 TLYHLP------R-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-----------------------GKV 51 (76)
T ss_pred EEEeCC------C-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-----------------------CCC
Confidence 466654 3 45789999999999999988886531 223444443221 234
Q ss_pred CEEEECCeEEechHHHHHHHH
Q 041824 199 PRVFVKGRYVGGAEEVLRIVE 219 (289)
Q Consensus 199 PqIFI~G~~IGG~del~~L~E 219 (289)
|.+..+|..|.....+.+..+
T Consensus 52 P~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 52 PVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred CEEEECCEEEEcHHHHHHHHH
Confidence 999999998988888777654
No 95
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=95.59 E-value=0.096 Score=48.42 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=56.2
Q ss_pred EEEEEecCCCCC--CCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCC
Q 041824 120 VVIYTTTLRGIR--KTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPV 197 (289)
Q Consensus 120 VVVYttSLrgvR--~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~ 197 (289)
|.+|.+.-..-+ ..|++|++|+.+|..+||+|+.+.|+.... .+++.++.... .+
T Consensus 3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~g--------------------~v-- 59 (236)
T TIGR00862 3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPGT--------------------HP-- 59 (236)
T ss_pred eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcCC--------------------CC--
Confidence 567777632222 589999999999999999999988876432 34555543221 34
Q ss_pred CCEEEECCeEEechHHHHHHHHh
Q 041824 198 LPRVFVKGRYVGGAEEVLRIVEE 220 (289)
Q Consensus 198 LPqIFI~G~~IGG~del~~L~E~ 220 (289)
|.+..+|..|.....+.++.++
T Consensus 60 -PvL~~~g~~l~ES~aI~eYL~e 81 (236)
T TIGR00862 60 -PFLTYNTEVKTDVNKIEEFLEE 81 (236)
T ss_pred -CEEEECCEEeecHHHHHHHHHH
Confidence 9998899999988888887664
No 96
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=95.57 E-value=0.032 Score=41.29 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHhCCCcEEEEEcCC--Ch-hHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEE-CCeEE
Q 041824 133 TYEACKAAKSVIENFGVAVSERDVSM--DR-GFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFV-KGRYV 208 (289)
Q Consensus 133 tC~~C~~ak~iL~~~gV~y~ErDVs~--d~-~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI-~G~~I 208 (289)
.||++++++-+|+.+|++|+..-+.. +. ...+++.++.+.. ++ |.+.. +|+.|
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~--------------------~V---P~L~~~~g~vi 57 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRG--------------------KV---PVLVDPDGTVI 57 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT---------------------SS---SEEEETTTEEE
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCe--------------------EE---EEEEECCCCEe
Confidence 48999999999999999998766632 11 1225666664431 45 99998 89999
Q ss_pred echHHHHHHHHh
Q 041824 209 GGAEEVLRIVEE 220 (289)
Q Consensus 209 GG~del~~L~E~ 220 (289)
.....+.++.++
T Consensus 58 ~eS~~I~~yL~~ 69 (70)
T PF13409_consen 58 NESLAILEYLEE 69 (70)
T ss_dssp ESHHHHHHHHHH
T ss_pred eCHHHHHHHHhc
Confidence 998888876653
No 97
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=95.45 E-value=0.057 Score=42.06 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=31.2
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHH-------HhC--CCcEEEEEcCCChhHHHHHHHHHcc
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVI-------ENF--GVAVSERDVSMDRGFKEELRELMMR 172 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL-------~~~--gV~y~ErDVs~d~~~reEL~~llg~ 172 (289)
-+|.|+++ +|++|++....+ +.+ ++.+-.+|++.+.....++.+..+.
T Consensus 14 vlv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i 70 (104)
T cd02953 14 VFVDFTAD------WCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGV 70 (104)
T ss_pred EEEEEEcc------hhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCC
Confidence 35667777 999999887443 111 5777788887665444556655543
No 98
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=95.43 E-value=0.08 Score=39.08 Aligned_cols=68 Identities=12% Similarity=0.218 Sum_probs=46.3
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCCh--hHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 121 VIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDR--GFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 121 VVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~--~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
.+|+.. .+ .+.+++.+|..+|++|+.++++... ...++++++.... .+
T Consensus 2 ~Ly~~~------~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~--------------------~v--- 51 (77)
T cd03057 2 KLYYSP------GA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKG--------------------QV--- 51 (77)
T ss_pred EEEeCC------CC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCC--------------------CC---
Confidence 477766 44 4789999999999999988876532 2245566543321 34
Q ss_pred CEEEEC-CeEEechHHHHHHH
Q 041824 199 PRVFVK-GRYVGGAEEVLRIV 218 (289)
Q Consensus 199 PqIFI~-G~~IGG~del~~L~ 218 (289)
|.+..+ |..+.....+.+..
T Consensus 52 P~l~~~~g~~l~eS~aI~~yL 72 (77)
T cd03057 52 PALVLDDGEVLTESAAILQYL 72 (77)
T ss_pred CEEEECCCcEEEcHHHHHHHH
Confidence 988887 77777776666554
No 99
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=95.32 E-value=0.1 Score=38.27 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=47.6
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCCh--hHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 121 VIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDR--GFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 121 VVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~--~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
.+|... ..+++.+++.+|+.+|++|+.+++.... ...+++++.... ..+
T Consensus 2 ~l~~~~------~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~--------------------~~v--- 52 (73)
T cd03047 2 TIWGRR------SSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN--------------------GRV--- 52 (73)
T ss_pred EEEecC------CCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC--------------------CCC---
Confidence 578777 6789999999999999999988876422 223445543221 134
Q ss_pred CEEEECCeEEechHHHHHH
Q 041824 199 PRVFVKGRYVGGAEEVLRI 217 (289)
Q Consensus 199 PqIFI~G~~IGG~del~~L 217 (289)
|.+..+|..|.....+.+.
T Consensus 53 P~L~~~~~~l~eS~aI~~Y 71 (73)
T cd03047 53 PVLEDGDFVLWESNAILRY 71 (73)
T ss_pred CEEEECCEEEECHHHHHHH
Confidence 9998888887766665543
No 100
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.31 E-value=0.048 Score=48.74 Aligned_cols=39 Identities=13% Similarity=0.207 Sum_probs=30.5
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHHHHHhC-----CCcEEEEEcCCChh
Q 041824 117 ENKVVIYTTTLRGIRKTYEACKAAKSVIENF-----GVAVSERDVSMDRG 161 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~-----gV~y~ErDVs~d~~ 161 (289)
.-.|++|+++ +|++|..++.+|+.+ .|.+..+|+..+++
T Consensus 134 pv~I~~F~a~------~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~ 177 (215)
T TIGR02187 134 PVRIEVFVTP------TCPYCPYAVLMAHKFALANDKILGEMIEANENPD 177 (215)
T ss_pred CcEEEEEECC------CCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH
Confidence 4467779999 999999999999864 46677788876543
No 101
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.93 E-value=0.23 Score=44.42 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=33.9
Q ss_pred CCCCcEEEEEe---cCCCCCCCCHHHHHHHHHHHhC-----CCcEEEEEcCCChhHHHHHHHHHcc
Q 041824 115 DGENKVVIYTT---TLRGIRKTYEACKAAKSVIENF-----GVAVSERDVSMDRGFKEELRELMMR 172 (289)
Q Consensus 115 ~~~~kVVVYtt---SLrgvR~tC~~C~~ak~iL~~~-----gV~y~ErDVs~d~~~reEL~~llg~ 172 (289)
.+...|++|++ + +|+.|+.+..+|+.. ++.+..+|++.+. -.++.+..+.
T Consensus 18 ~~~~~i~~f~~~~a~------wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~--~~~l~~~~~V 75 (215)
T TIGR02187 18 KNPVEIVVFTDNDKE------GCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE--DKEEAEKYGV 75 (215)
T ss_pred CCCeEEEEEcCCCCC------CCCchHHHHHHHHHHHhhCCCceEEEEecCCcc--cHHHHHHcCC
Confidence 44556889988 6 999999999998654 3556677777542 2344444443
No 102
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.92 E-value=0.026 Score=56.82 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=42.9
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHHHHHhC-----CCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccC
Q 041824 116 GENKVVIYTTTLRGIRKTYEACKAAKSVIENF-----GVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESS 190 (289)
Q Consensus 116 ~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~-----gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t 190 (289)
++-.|.+|.+. +|++|..|+++++.+ +|..+.+|....++ +.+..+..
T Consensus 117 ~~~~i~~f~~~------~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~~v~----------------- 169 (515)
T TIGR03140 117 GPLHFETYVSL------TCQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEALGIQ----------------- 169 (515)
T ss_pred CCeEEEEEEeC------CCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhcCCc-----------------
Confidence 45579999999 999999999998765 45566666664432 33332321
Q ss_pred CCCCCCCCCEEEECCeEEe
Q 041824 191 VQPLPPVLPRVFVKGRYVG 209 (289)
Q Consensus 191 ~~~tv~~LPqIFI~G~~IG 209 (289)
.+ |++||||+.++
T Consensus 170 ---~V---P~~~i~~~~~~ 182 (515)
T TIGR03140 170 ---GV---PAVFLNGEEFH 182 (515)
T ss_pred ---cc---CEEEECCcEEE
Confidence 34 99999998664
No 103
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.58 E-value=0.036 Score=55.71 Aligned_cols=61 Identities=16% Similarity=0.246 Sum_probs=43.7
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHHHHHhC-----CCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccC
Q 041824 116 GENKVVIYTTTLRGIRKTYEACKAAKSVIENF-----GVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESS 190 (289)
Q Consensus 116 ~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~-----gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t 190 (289)
++-.|.+|.+. +|++|..|+++++.. .|.++.+|....++ +.+..+..
T Consensus 116 ~~~~i~~fv~~------~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~----~~~~~~v~----------------- 168 (517)
T PRK15317 116 GDFHFETYVSL------SCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD----EVEARNIM----------------- 168 (517)
T ss_pred CCeEEEEEEcC------CCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh----HHHhcCCc-----------------
Confidence 45569999999 999999999988764 56677777765443 33333321
Q ss_pred CCCCCCCCCEEEECCeEEe
Q 041824 191 VQPLPPVLPRVFVKGRYVG 209 (289)
Q Consensus 191 ~~~tv~~LPqIFI~G~~IG 209 (289)
.+ |++||||+.+.
T Consensus 169 ---~V---P~~~i~~~~~~ 181 (517)
T PRK15317 169 ---AV---PTVFLNGEEFG 181 (517)
T ss_pred ---cc---CEEEECCcEEE
Confidence 34 99999997654
No 104
>PHA02278 thioredoxin-like protein
Probab=94.46 E-value=0.24 Score=39.94 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=31.5
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHHHHHhC------CCcEEEEEcCCChhHHHHHHHHHc
Q 041824 117 ENKVVIYTTTLRGIRKTYEACKAAKSVIENF------GVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~------gV~y~ErDVs~d~~~reEL~~llg 171 (289)
.+.|+||..+ .+|+.|+.+..+|+.. .+++..+||+.++.-.+++.+..+
T Consensus 14 ~~~vvV~F~A-----~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~ 69 (103)
T PHA02278 14 KKDVIVMITQ-----DNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD 69 (103)
T ss_pred CCcEEEEEEC-----CCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC
Confidence 4445555444 3999999988877543 356888899865322344555544
No 105
>PRK15113 glutathione S-transferase; Provisional
Probab=93.85 E-value=0.35 Score=42.63 Aligned_cols=73 Identities=8% Similarity=0.126 Sum_probs=50.7
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCCh--hHHHHHHHHHcccccccCCCCCcchhhccCCCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDR--GFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPP 196 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~--~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~ 196 (289)
.+++|...-. .+++|.+|+-+|..+||+|+.+.|+... ...+++.++.-. ..+
T Consensus 5 ~~~Ly~~~~~----~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~--------------------g~V- 59 (214)
T PRK15113 5 AITLYSDAHF----FSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT--------------------RRV- 59 (214)
T ss_pred eEEEEeCCCC----CCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC--------------------CCC-
Confidence 4789986411 5799999999999999999988887532 123455554221 134
Q ss_pred CCCEEEECCeEEechHHHHHHH
Q 041824 197 VLPRVFVKGRYVGGAEEVLRIV 218 (289)
Q Consensus 197 ~LPqIFI~G~~IGG~del~~L~ 218 (289)
|.+.+||..|--...+.++.
T Consensus 60 --P~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 60 --PTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred --CEEEECCEEEecHHHHHHHH
Confidence 99999998776666666543
No 106
>PTZ00051 thioredoxin; Provisional
Probab=93.79 E-value=0.33 Score=36.92 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=26.5
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEcCCCh
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIEN-----FGVAVSERDVSMDR 160 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~-----~gV~y~ErDVs~d~ 160 (289)
|+.|+.+ +|+.|+++...|+. .++.|-.+|++...
T Consensus 22 li~f~~~------~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~ 61 (98)
T PTZ00051 22 IVDFYAE------WCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS 61 (98)
T ss_pred EEEEECC------CCHHHHHHhHHHHHHHHHcCCcEEEEEECcchH
Confidence 4556666 99999999888876 36788888887543
No 107
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.62 E-value=0.23 Score=50.59 Aligned_cols=59 Identities=15% Similarity=0.109 Sum_probs=42.8
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHHHHH----hC-CCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccC
Q 041824 116 GENKVVIYTTTLRGIRKTYEACKAAKSVIE----NF-GVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESS 190 (289)
Q Consensus 116 ~~~kVVVYttSLrgvR~tC~~C~~ak~iL~----~~-gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t 190 (289)
++-.|.||.++ +|++|.++.+.++ .. +|.++.+|+...+ |+.+..+-
T Consensus 476 ~~~~i~v~~~~------~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~----~~~~~~~v------------------ 527 (555)
T TIGR03143 476 KPVNIKIGVSL------SCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFP----DLKDEYGI------------------ 527 (555)
T ss_pred CCeEEEEEECC------CCCCcHHHHHHHHHHHHhCCCceEEEEECcccH----HHHHhCCc------------------
Confidence 44568899999 9999988877654 44 7999999998654 34433332
Q ss_pred CCCCCCCCCEEEECCeE
Q 041824 191 VQPLPPVLPRVFVKGRY 207 (289)
Q Consensus 191 ~~~tv~~LPqIFI~G~~ 207 (289)
..+|.+||||+.
T Consensus 528 -----~~vP~~~i~~~~ 539 (555)
T TIGR03143 528 -----MSVPAIVVDDQQ 539 (555)
T ss_pred -----eecCEEEECCEE
Confidence 233999999963
No 108
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=93.60 E-value=0.16 Score=43.94 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=48.8
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCC-C--hhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 122 IYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSM-D--RGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 122 VYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~-d--~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
||+.. .++++.+|+.+|..+||+|+.+.++. . ....+++.++... ..+
T Consensus 2 Ly~~~------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-----------------------g~v 52 (210)
T TIGR01262 2 LYSYW------RSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-----------------------GLV 52 (210)
T ss_pred cccCC------CCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-----------------------CcC
Confidence 56666 77999999999999999999988874 1 1122344443211 234
Q ss_pred CEEEECCeEEechHHHHHHHH
Q 041824 199 PRVFVKGRYVGGAEEVLRIVE 219 (289)
Q Consensus 199 PqIFI~G~~IGG~del~~L~E 219 (289)
|.+.+||..|-....+.+..+
T Consensus 53 P~L~~~g~~l~ES~aI~~yl~ 73 (210)
T TIGR01262 53 PTLDIDGEVLTQSLAIIEYLE 73 (210)
T ss_pred CEEEECCEEeecHHHHHHHHH
Confidence 999999988888777776543
No 109
>PLN02473 glutathione S-transferase
Probab=93.29 E-value=0.35 Score=42.18 Aligned_cols=71 Identities=13% Similarity=-0.010 Sum_probs=50.2
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCC--hhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMD--RGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPV 197 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d--~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~ 197 (289)
+.+|... ..+++.+|+-+|..+||+|+.+.|+.. .....++.++... ..+
T Consensus 3 ~kLy~~~------~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~--------------------g~v-- 54 (214)
T PLN02473 3 VKVYGQI------KAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF--------------------GQV-- 54 (214)
T ss_pred eEEecCC------CCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC--------------------CCC--
Confidence 5688877 789999999999999999998766532 1223344433211 134
Q ss_pred CCEEEECCeEEechHHHHHHHH
Q 041824 198 LPRVFVKGRYVGGAEEVLRIVE 219 (289)
Q Consensus 198 LPqIFI~G~~IGG~del~~L~E 219 (289)
|.+..+|..|.....+.+..+
T Consensus 55 -P~L~~~g~~l~ES~aI~~YL~ 75 (214)
T PLN02473 55 -PAIEDGDLKLFESRAIARYYA 75 (214)
T ss_pred -CeEEECCEEEEehHHHHHHHH
Confidence 999999998888877777543
No 110
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=93.24 E-value=1.1 Score=33.71 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHh----C--CCcEEEEEcCCCh
Q 041824 133 TYEACKAAKSVIEN----F--GVAVSERDVSMDR 160 (289)
Q Consensus 133 tC~~C~~ak~iL~~----~--gV~y~ErDVs~d~ 160 (289)
+|+.|+.++..|.. + +|.|-.+|++.++
T Consensus 28 ~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~ 61 (103)
T PF00085_consen 28 WCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK 61 (103)
T ss_dssp TSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH
T ss_pred CCCccccccceecccccccccccccchhhhhccc
Confidence 99999999987753 3 5888899998663
No 111
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=93.05 E-value=0.34 Score=45.26 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeEEechH
Q 041824 133 TYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRYVGGAE 212 (289)
Q Consensus 133 tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~IGG~d 212 (289)
.|++|.+|+-+|+.+||+|+.+.|+... .-+++.++.-. ..+ |.+..+|..|....
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~--------------------GkV---PvL~~d~~~L~ES~ 127 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPE--------------------GKV---PVVKLDEKWVADSD 127 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCC--------------------CCC---CEEEECCEEEecHH
Confidence 7999999999999999999988776532 12334443211 134 99999998887777
Q ss_pred HHHHHHH
Q 041824 213 EVLRIVE 219 (289)
Q Consensus 213 el~~L~E 219 (289)
.+.+..+
T Consensus 128 aI~~YL~ 134 (265)
T PLN02817 128 VITQALE 134 (265)
T ss_pred HHHHHHH
Confidence 7766554
No 112
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=93.03 E-value=0.49 Score=38.33 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=28.1
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEcCCChh
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKSVIEN-----FGVAVSERDVSMDRG 161 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~iL~~-----~gV~y~ErDVs~d~~ 161 (289)
..|+||..+ .+|+.|+.+...|+. .++.|..+|++..++
T Consensus 23 ~~vvV~f~a-----~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~ 66 (113)
T cd02989 23 ERVVCHFYH-----PEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF 66 (113)
T ss_pred CcEEEEEEC-----CCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH
Confidence 345555443 299999999888865 268899999987653
No 113
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=93.02 E-value=0.82 Score=34.48 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=46.3
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLP 199 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LP 199 (289)
+++|... ..+.|.+++.+|+..|++|+.+.++..+++. +++.- ... ....+|
T Consensus 2 ~~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~-~~~--------------------~~g~vP 53 (79)
T cd03077 2 PVLHYFN------GRGRMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKD-GSL--------------------MFQQVP 53 (79)
T ss_pred CEEEEeC------CCChHHHHHHHHHHcCCCcEEEEeccHHHHH-hhccc-cCC--------------------CCCCCC
Confidence 5688887 5578889999999999999988876532221 11110 000 012349
Q ss_pred EEEECCeEEechHHHHHHH
Q 041824 200 RVFVKGRYVGGAEEVLRIV 218 (289)
Q Consensus 200 qIFI~G~~IGG~del~~L~ 218 (289)
.+.+||..|.....+....
T Consensus 54 ~L~~~g~~l~ES~AI~~YL 72 (79)
T cd03077 54 MVEIDGMKLVQTRAILNYI 72 (79)
T ss_pred EEEECCEEEeeHHHHHHHH
Confidence 9999998887766665543
No 114
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=92.94 E-value=0.32 Score=38.86 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=24.7
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHh----C-CCcEEEEEcCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIEN----F-GVAVSERDVSM 158 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~----~-gV~y~ErDVs~ 158 (289)
||.|+++ +|+.|+.+...|+. + ++.|-.+|++.
T Consensus 28 vv~F~a~------~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~ 65 (113)
T cd02957 28 VVHFYEP------GFPRCKILDSHLEELAAKYPETKFVKINAEK 65 (113)
T ss_pred EEEEeCC------CCCcHHHHHHHHHHHHHHCCCcEEEEEEchh
Confidence 4456666 99999999888864 2 57788888864
No 115
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=0.79 Score=42.82 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=54.3
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHH-HHHHcccccccCCCCCcchhhccCCCCCCC
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEEL-RELMMRRRRRSSSSNNNEEEAESSVQPLPP 196 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL-~~llg~~~~~~~~s~~~~~~g~~t~~~tv~ 196 (289)
+.|.||+.- .||+.+||+-.|+.+||+|+.++++-.. +-++ .+..-- ...+
T Consensus 8 ~~vrL~~~w------~sPfa~R~~iaL~~KgI~yE~veedl~~--Ks~~ll~~np~-------------------hkKV- 59 (231)
T KOG0406|consen 8 GTVKLLGMW------FSPFAQRVRIALKLKGIPYEYVEEDLTN--KSEWLLEKNPV-------------------HKKV- 59 (231)
T ss_pred CeEEEEEee------cChHHHHHHHHHHhcCCceEEEecCCCC--CCHHHHHhccc-------------------cccC-
Confidence 679999998 9999999999999999999988877532 2233 322111 1134
Q ss_pred CCCEEEECCeEEechHHHHHHHHhCc
Q 041824 197 VLPRVFVKGRYVGGAEEVLRIVEEGW 222 (289)
Q Consensus 197 ~LPqIFI~G~~IGG~del~~L~E~G~ 222 (289)
|.+..||+.|.-.-.+.++.++-.
T Consensus 60 --PvL~Hn~k~i~ESliiveYiDe~w 83 (231)
T KOG0406|consen 60 --PVLEHNGKPICESLIIVEYIDETW 83 (231)
T ss_pred --CEEEECCceehhhHHHHHHHHhhc
Confidence 999999999876666666555433
No 116
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=92.61 E-value=0.88 Score=35.81 Aligned_cols=36 Identities=6% Similarity=-0.020 Sum_probs=26.2
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhC-----CCcEEEEEcCCCh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENF-----GVAVSERDVSMDR 160 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~-----gV~y~ErDVs~d~ 160 (289)
-||-|+.+ +|+.|+.....|+.. ++.|-.+|++.+.
T Consensus 18 vvv~F~a~------wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~ 58 (103)
T cd02985 18 VVLEFALK------HSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND 58 (103)
T ss_pred EEEEEECC------CCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh
Confidence 35555556 999999888888652 5778888887654
No 117
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=92.57 E-value=0.62 Score=37.46 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=22.6
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHH-------h--CCCcEEEEEcCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIE-------N--FGVAVSERDVSMD 159 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~-------~--~gV~y~ErDVs~d 159 (289)
-+|.|+++ +|++|++....+. . .++.+..+|++.+
T Consensus 17 vlv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 60 (125)
T cd02951 17 LLLLFSQP------GCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGD 60 (125)
T ss_pred EEEEEeCC------CCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCC
Confidence 35566666 9999998875441 1 2455667777654
No 118
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=92.54 E-value=0.69 Score=34.83 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=26.9
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHHHHHh-------C-CCcEEEEEcCCCh
Q 041824 116 GENKVVIYTTTLRGIRKTYEACKAAKSVIEN-------F-GVAVSERDVSMDR 160 (289)
Q Consensus 116 ~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~-------~-gV~y~ErDVs~d~ 160 (289)
+..-||+|+++ +|+.|+.....|+. . ++.+..+|.+.+.
T Consensus 13 ~~~~~i~f~~~------~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 59 (102)
T TIGR01126 13 NKDVLVEFYAP------WCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK 59 (102)
T ss_pred CCcEEEEEECC------CCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH
Confidence 34457788888 99999987666643 1 2667777776553
No 119
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=92.51 E-value=0.55 Score=39.13 Aligned_cols=43 Identities=9% Similarity=0.162 Sum_probs=29.9
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhC-----C-CcEEEEEcCCChhHHHHHHHHHcc
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENF-----G-VAVSERDVSMDRGFKEELRELMMR 172 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~-----g-V~y~ErDVs~d~~~reEL~~llg~ 172 (289)
||-|+.+ +|+.|+.+..+|+.. + +.|-.+|++.+++ +.+..+.
T Consensus 18 VV~F~A~------WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~----la~~~~V 66 (114)
T cd02954 18 VIRFGRD------WDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD----FNKMYEL 66 (114)
T ss_pred EEEEECC------CChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHcCC
Confidence 4446666 999999998888543 2 5688999987753 4444443
No 120
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=92.41 E-value=1.3 Score=33.07 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=25.5
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHh----C--CCcEEEEEcCCChh
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIEN----F--GVAVSERDVSMDRG 161 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~----~--gV~y~ErDVs~d~~ 161 (289)
|+.|.++ +|+.|+.+...|+. + .+.|-.+|++.+.+
T Consensus 18 vi~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~ 59 (101)
T TIGR01068 18 LVDFWAP------WCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD 59 (101)
T ss_pred EEEEECC------CCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH
Confidence 4445555 99999998777754 2 37788888886643
No 121
>PLN02378 glutathione S-transferase DHAR1
Probab=92.40 E-value=0.57 Score=41.49 Aligned_cols=64 Identities=9% Similarity=0.142 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeEEech
Q 041824 132 KTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRYVGGA 211 (289)
Q Consensus 132 ~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~IGG~ 211 (289)
..|++|++|+-+|+.+|++|+.+.|+.... -+++.++... ..+ |.+-.+|..|.-.
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~inP~--------------------G~V---PvL~~~~~~l~ES 73 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDISPQ--------------------GKV---PVLKIDDKWVTDS 73 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhCCC--------------------CCC---CEEEECCEEecCH
Confidence 579999999999999999999877765321 2234443221 145 9998899888776
Q ss_pred HHHHHHHH
Q 041824 212 EEVLRIVE 219 (289)
Q Consensus 212 del~~L~E 219 (289)
..+.+..+
T Consensus 74 ~aI~~YL~ 81 (213)
T PLN02378 74 DVIVGILE 81 (213)
T ss_pred HHHHHHHH
Confidence 66666544
No 122
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=92.33 E-value=1.1 Score=34.43 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=27.3
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHh-------CCCcEEEEEcCCChh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIEN-------FGVAVSERDVSMDRG 161 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~-------~gV~y~ErDVs~d~~ 161 (289)
-+|.|.++ +|+.|+++...|+. .+|.+-.+|++.++.
T Consensus 19 ~lv~f~a~------wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~ 62 (101)
T cd02994 19 WMIEFYAP------WCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG 62 (101)
T ss_pred EEEEEECC------CCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh
Confidence 47777777 99999998877753 246677888876543
No 123
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=92.16 E-value=0.83 Score=41.90 Aligned_cols=37 Identities=16% Similarity=0.450 Sum_probs=28.0
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhC---CCcEEEEEc
Q 041824 114 PDGENKVVIYTTTLRGIRKTYEACKAAKSVIENF---GVAVSERDV 156 (289)
Q Consensus 114 p~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~---gV~y~ErDV 156 (289)
+.+...|++|+=. .|+||+++...|+.+ +|.+..+.+
T Consensus 105 ~~~k~~I~vFtDp------~CpyCkkl~~~l~~~~~~~v~v~~~~~ 144 (232)
T PRK10877 105 PQEKHVITVFTDI------TCGYCHKLHEQMKDYNALGITVRYLAF 144 (232)
T ss_pred CCCCEEEEEEECC------CChHHHHHHHHHHHHhcCCeEEEEEec
Confidence 4556678899988 999999998888875 466655433
No 124
>PRK09381 trxA thioredoxin; Provisional
Probab=91.84 E-value=0.72 Score=36.00 Aligned_cols=38 Identities=13% Similarity=0.369 Sum_probs=26.6
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHHHHHh----C--CCcEEEEEcCCChh
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKSVIEN----F--GVAVSERDVSMDRG 161 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~iL~~----~--gV~y~ErDVs~d~~ 161 (289)
.-||.|+++ +|+.|+.+...|+. + ++.+-.+|++.++.
T Consensus 23 ~vvv~f~~~------~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~ 66 (109)
T PRK09381 23 AILVDFWAE------WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG 66 (109)
T ss_pred eEEEEEECC------CCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh
Confidence 345566666 99999999877753 3 36677888876543
No 125
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=90.97 E-value=1.6 Score=38.30 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=58.4
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCC
Q 041824 116 GENKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLP 195 (289)
Q Consensus 116 ~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv 195 (289)
...++++|..+ +|.=|+.--+.|+..|+.+..++... .+.+++++|..- ..+ .-
T Consensus 24 ~~~~~~vyksP------nCGCC~~w~~~mk~~Gf~Vk~~~~~d----~~alK~~~gIp~----------e~~------SC 77 (149)
T COG3019 24 QATEMVVYKSP------NCGCCDEWAQHMKANGFEVKVVETDD----FLALKRRLGIPY----------EMQ------SC 77 (149)
T ss_pred ceeeEEEEeCC------CCccHHHHHHHHHhCCcEEEEeecCc----HHHHHHhcCCCh----------hhc------cc
Confidence 34579999999 99999999999999999988877753 456777777541 111 12
Q ss_pred CCCCEEEECCeEEech---HHHHHHHHhCc
Q 041824 196 PVLPRVFVKGRYVGGA---EEVLRIVEEGW 222 (289)
Q Consensus 196 ~~LPqIFI~G~~IGG~---del~~L~E~G~ 222 (289)
=...|||.||=|. +++.+|.+++.
T Consensus 78 ---HT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 78 ---HTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred ---cEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 4678999999885 77777766655
No 126
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.40 E-value=0.18 Score=50.04 Aligned_cols=54 Identities=26% Similarity=0.526 Sum_probs=40.6
Q ss_pred CCcccCCCCc------eeEeCCCCCCcceeeeccCCCCccccccCCccCcCCcc---cCCCCC
Q 041824 236 KGVCQGCADV------RFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV---LCPLCS 289 (289)
Q Consensus 236 ~~~C~~Cgg~------rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv---rCp~C~ 289 (289)
...|..|.|. .-..|..|+|+-.+....+..-......|+.||-.|-+ .|+.|.
T Consensus 142 ~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~ 204 (371)
T COG0484 142 SVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCK 204 (371)
T ss_pred eeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCC
Confidence 4689999988 67899999999876655422112346899999999987 599883
No 127
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=90.36 E-value=0.66 Score=39.32 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=42.8
Q ss_pred CCcEEEEEecCCCCCCCCHH--------HHHHHHHHHhCCCcEEEEEcCCChhHH---HHHHHHHcccccccCCCCCcch
Q 041824 117 ENKVVIYTTTLRGIRKTYEA--------CKAAKSVIENFGVAVSERDVSMDRGFK---EELRELMMRRRRRSSSSNNNEE 185 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~~--------C~~ak~iL~~~gV~y~ErDVs~d~~~r---eEL~~llg~~~~~~~~s~~~~~ 185 (289)
|++|.||--.|==..-.|.. =..+...|+..||.+.-.+++.++... +.+.+++...
T Consensus 1 M~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~------------ 68 (123)
T PF06953_consen 1 MKKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTE------------ 68 (123)
T ss_dssp --EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH------------
T ss_pred CCceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHc------------
Confidence 35666776664211112221 235567789999999999999887542 2344444332
Q ss_pred hhccCCCCCCCCCCEEEECCeEE--echHHHHHH
Q 041824 186 EAESSVQPLPPVLPRVFVKGRYV--GGAEEVLRI 217 (289)
Q Consensus 186 ~g~~t~~~tv~~LPqIFI~G~~I--GG~del~~L 217 (289)
....||.++|||+.+ |.|=...+|
T Consensus 69 --------G~e~LPitlVdGeiv~~G~YPt~eEl 94 (123)
T PF06953_consen 69 --------GAEALPITLVDGEIVKTGRYPTNEEL 94 (123)
T ss_dssp ---------GGG-SEEEETTEEEEESS---HHHH
T ss_pred --------CcccCCEEEECCEEEEecCCCCHHHH
Confidence 124579999999865 666554443
No 128
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=90.26 E-value=2 Score=33.66 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=23.1
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHh----CC---CcEEEEEcC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIEN----FG---VAVSERDVS 157 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~----~g---V~y~ErDVs 157 (289)
-||.|+++ +|+.|+.+...|+. ++ +.|..+|++
T Consensus 20 vvv~F~a~------wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d 59 (102)
T cd02948 20 TVVDVYQE------WCGPCKAVVSLFKKIKNELGDDLLHFATAEAD 59 (102)
T ss_pred EEEEEECC------cCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC
Confidence 35566666 99999988877754 32 456677776
No 129
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=90.20 E-value=1.9 Score=32.53 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=25.5
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHh------CCCcEEEEEcCCCh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIEN------FGVAVSERDVSMDR 160 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~------~gV~y~ErDVs~d~ 160 (289)
-||.|..+ +|..|+++...|+. ..+.+-.+|++..+
T Consensus 17 v~v~f~~~------~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~ 58 (97)
T cd02984 17 LVLHFWAP------WAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP 58 (97)
T ss_pred EEEEEECC------CCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH
Confidence 35566666 99999999888875 25666677776443
No 130
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=90.06 E-value=0.44 Score=35.54 Aligned_cols=44 Identities=27% Similarity=0.612 Sum_probs=25.1
Q ss_pred ceeEeCCCCCCcceeeeccCC--CCccccccCCccCcCCccc----CCCC
Q 041824 245 VRFFPCFRCNGSCKLVINMQP--RGKTAALRCPDCNENGLVL----CPLC 288 (289)
Q Consensus 245 ~rfvpC~~C~GS~K~~~~~~~--~g~~~~~rC~~CNENGLvr----Cp~C 288 (289)
.....|..|+|+-.++..... ........|+.|+=.|.+. |+.|
T Consensus 13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C 62 (66)
T PF00684_consen 13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTC 62 (66)
T ss_dssp TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSS
T ss_pred CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCC
Confidence 445788888888766554321 1112357888888888775 7766
No 131
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=90.05 E-value=1.8 Score=32.75 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=24.1
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHh----C--CCcEEEEEcCCCh
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIEN----F--GVAVSERDVSMDR 160 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~----~--gV~y~ErDVs~d~ 160 (289)
||.|.++ +|+.|+++...|.. + .+.+-.+|++.+.
T Consensus 16 lv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 56 (96)
T cd02956 16 VVDFWAP------RSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP 56 (96)
T ss_pred EEEEECC------CChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH
Confidence 5555566 99999999877764 2 3455677777654
No 132
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=0.39 Score=42.19 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=35.6
Q ss_pred HhhhcCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhC------CCcEEEEEcCCChhH
Q 041824 107 RFERICPPDGENKVVIYTTTLRGIRKTYEACKAAKSVIENF------GVAVSERDVSMDRGF 162 (289)
Q Consensus 107 ~f~~~~pp~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~------gV~y~ErDVs~d~~~ 162 (289)
.|+.+-...+..=||-|+.. +|..|+.+.-+|+.+ .+++..+|++.+.+.
T Consensus 52 ~~~~~Vi~S~~PVlVdF~A~------WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~el 107 (150)
T KOG0910|consen 52 EFDDKVINSDVPVLVDFHAE------WCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPEL 107 (150)
T ss_pred HHHHHHHccCCCEEEEEecC------cCccHhHhhHHHHHHHHhhcCeEEEEEEccccccch
Confidence 34444333344457888888 999999999999764 466788999887653
No 133
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=89.62 E-value=3.1 Score=34.43 Aligned_cols=66 Identities=23% Similarity=0.268 Sum_probs=46.0
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHHHHHhC------CCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccC
Q 041824 117 ENKVVIYTTTLRGIRKTYEACKAAKSVIENF------GVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESS 190 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~------gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t 190 (289)
...|+||-=| -+|+=+..|..-|+.+ .+++..+||-.++..-.++.+.+|-.
T Consensus 19 ~~~~~iFKHS-----t~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~----------------- 76 (105)
T PF11009_consen 19 EKPVLIFKHS-----TRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVK----------------- 76 (105)
T ss_dssp -SEEEEEEE------TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT-------------------
T ss_pred cCcEEEEEeC-----CCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCC-----------------
Confidence 4568888877 1499999988877653 29999999999999999999999864
Q ss_pred CCCCCCCCCEEEE--CCeEEe
Q 041824 191 VQPLPPVLPRVFV--KGRYVG 209 (289)
Q Consensus 191 ~~~tv~~LPqIFI--~G~~IG 209 (289)
.-. |||++ ||+.|=
T Consensus 77 --HeS---PQ~ili~~g~~v~ 92 (105)
T PF11009_consen 77 --HES---PQVILIKNGKVVW 92 (105)
T ss_dssp ----S---SEEEEEETTEEEE
T ss_pred --cCC---CcEEEEECCEEEE
Confidence 123 99886 887663
No 134
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=89.42 E-value=1.8 Score=33.63 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=15.8
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 041824 116 GENKVVIYTTTLRGIRKTYEACKAAKSVIE 145 (289)
Q Consensus 116 ~~~kVVVYttSLrgvR~tC~~C~~ak~iL~ 145 (289)
+...|++|+.. +|++|+++...+.
T Consensus 5 ~k~~v~~F~~~------~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 5 GKPIVVVFTDP------WCPYCKKLEKELF 28 (112)
T ss_dssp SSEEEEEEE-T------T-HHHHHHHHHHH
T ss_pred CCEEEEEEECC------CCHHHHHHHHHHH
Confidence 34456667677 9999998866665
No 135
>PRK10357 putative glutathione S-transferase; Provisional
Probab=89.24 E-value=1.2 Score=38.40 Aligned_cols=32 Identities=6% Similarity=-0.035 Sum_probs=28.6
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCC
Q 041824 121 VIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSM 158 (289)
Q Consensus 121 VVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~ 158 (289)
.+|+.. .++++++|+-+|+.+||+|+.++++.
T Consensus 2 ~Ly~~~------~s~~~~~v~~~L~~~gv~ye~~~~~~ 33 (202)
T PRK10357 2 KLIGSY------TSPFVRKISILLLEKGITFEFVNELP 33 (202)
T ss_pred eeecCC------CCchHHHHHHHHHHcCCCCeEEecCC
Confidence 578887 88999999999999999999988875
No 136
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=88.91 E-value=1.2 Score=34.39 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeEEechHHH
Q 041824 135 EACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRYVGGAEEV 214 (289)
Q Consensus 135 ~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~IGG~del 214 (289)
+.|.++..+|+..|++|+.+++... ... ++ ...+ |.|-+||+.|+...-+
T Consensus 18 ~~~~kv~~~L~elglpye~~~~~~~-----------~~~---------~P-------~GkV---P~L~~dg~vI~eS~aI 67 (74)
T cd03079 18 ASCLAVQTFLKMCNLPFNVRCRANA-----------EFM---------SP-------SGKV---PFIRVGNQIVSEFGPI 67 (74)
T ss_pred CCHHHHHHHHHHcCCCcEEEecCCc-----------ccc---------CC-------CCcc---cEEEECCEEEeCHHHH
Confidence 7899999999999999998865321 000 00 0134 9999999999998887
Q ss_pred HHHHH
Q 041824 215 LRIVE 219 (289)
Q Consensus 215 ~~L~E 219 (289)
..+.+
T Consensus 68 l~yL~ 72 (74)
T cd03079 68 VQFVE 72 (74)
T ss_pred HHHHh
Confidence 76543
No 137
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=88.90 E-value=2.3 Score=37.21 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH--hCCCcEEEEEcC
Q 041824 114 PDGENKVVIYTTTLRGIRKTYEACKAAKSVIE--NFGVAVSERDVS 157 (289)
Q Consensus 114 p~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~--~~gV~y~ErDVs 157 (289)
+.++..|++|+-. .|++|+++...|+ ..+|.+..+-+.
T Consensus 75 ~~~~~~i~~f~D~------~Cp~C~~~~~~l~~~~~~v~v~~~~~p 114 (197)
T cd03020 75 GNGKRVVYVFTDP------DCPYCRKLEKELKPNADGVTVRIFPVP 114 (197)
T ss_pred CCCCEEEEEEECC------CCccHHHHHHHHhhccCceEEEEEEcC
Confidence 3456678888888 9999999999997 456777666553
No 138
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=88.80 E-value=1.6 Score=37.85 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=28.5
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHh----C---CCcEEEEEcCCChhHH
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIEN----F---GVAVSERDVSMDRGFK 163 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~----~---gV~y~ErDVs~d~~~r 163 (289)
||.|.++ +|+.|+++...|+. + ++.|-.+|++.+++..
T Consensus 51 vV~Fya~------wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la 95 (152)
T cd02962 51 LVEFFTT------WSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVA 95 (152)
T ss_pred EEEEECC------CCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHH
Confidence 6677777 99999998877743 2 4778899998776443
No 139
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=88.70 E-value=2 Score=31.56 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=24.6
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHHHHHh----C----CCcEEEEEcCCC
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKSVIEN----F----GVAVSERDVSMD 159 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~iL~~----~----gV~y~ErDVs~d 159 (289)
.-+|+|+++ +|+.|+.+...|+. + ++.+..+|.+.+
T Consensus 17 ~~~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 60 (101)
T cd02961 17 DVLVEFYAP------WCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN 60 (101)
T ss_pred cEEEEEECC------CCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch
Confidence 456666776 99999998887754 3 355566666643
No 140
>PLN02395 glutathione S-transferase
Probab=88.52 E-value=2.2 Score=37.07 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=48.8
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCCh--hHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDR--GFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPV 197 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~--~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~ 197 (289)
+.||... . ..+.+|+-+|..+|++|+.+.|+... ...+++.++... ..+
T Consensus 3 ~~ly~~~------~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~--------------------g~v-- 53 (215)
T PLN02395 3 LKVYGPA------F-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF--------------------GVV-- 53 (215)
T ss_pred EEEEcCC------c-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC--------------------CCC--
Confidence 5778743 2 35799999999999999988876421 123455554321 134
Q ss_pred CCEEEECCeEEechHHHHHHHHh
Q 041824 198 LPRVFVKGRYVGGAEEVLRIVEE 220 (289)
Q Consensus 198 LPqIFI~G~~IGG~del~~L~E~ 220 (289)
|.+..+|..|-....+.++.++
T Consensus 54 -P~L~~~~~~l~ES~aI~~YL~~ 75 (215)
T PLN02395 54 -PVIVDGDYKIFESRAIMRYYAE 75 (215)
T ss_pred -CEEEECCEEEEcHHHHHHHHHH
Confidence 9999999888888777776543
No 141
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=88.24 E-value=2.8 Score=32.26 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=26.1
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHHHHHh----C--CCcEEEEEcCCCh
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKSVIEN----F--GVAVSERDVSMDR 160 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~iL~~----~--gV~y~ErDVs~d~ 160 (289)
.-||.|+++ +|+.|+++...++. + .+.+-.+|.+.++
T Consensus 21 ~v~v~f~a~------wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~ 63 (104)
T cd03004 21 PWLVDFYAP------WCGPCQALLPELRKAARALKGKVKVGSVDCQKYE 63 (104)
T ss_pred eEEEEEECC------CCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH
Confidence 346667777 99999988776653 2 3667788887654
No 142
>PRK10767 chaperone protein DnaJ; Provisional
Probab=88.00 E-value=0.43 Score=46.52 Aligned_cols=65 Identities=22% Similarity=0.519 Sum_probs=40.7
Q ss_pred HHHHhccCCCc---ccCCcccCCCCcee------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc---cCCCCC
Q 041824 223 FGELIEGIPIR---KLKGVCQGCADVRF------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV---LCPLCS 289 (289)
Q Consensus 223 L~~lL~~~~~~---~~~~~C~~Cgg~rf------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv---rCp~C~ 289 (289)
|++++.+.... .....|..|.|.+. ..|..|+|+-++...... ......|+.|+-.|.+ +|+.|.
T Consensus 126 Lee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~--~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK10767 126 LEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGF--FTVQQTCPTCHGRGKIIKDPCKKCH 202 (371)
T ss_pred hHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeece--EEEEEeCCCCCCceeECCCCCCCCC
Confidence 55555443321 12457888887663 589999999766544311 1134688888888866 688773
No 143
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=87.84 E-value=2.6 Score=36.95 Aligned_cols=43 Identities=14% Similarity=0.263 Sum_probs=30.8
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChh--HHHHHHHH
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRG--FKEELREL 169 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~--~reEL~~l 169 (289)
+.||... .++|.+|+-+|+.+||+|+.++|+...+ ...++.++
T Consensus 2 ~~Ly~~~-------~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~i 46 (215)
T PRK13972 2 IDLYFAP-------TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRI 46 (215)
T ss_pred eEEEECC-------CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhh
Confidence 4577654 3789999999999999999888865322 23455554
No 144
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=87.79 E-value=1.7 Score=31.72 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=25.8
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhC------CCcEEEEEcCCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENF------GVAVSERDVSMD 159 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~------gV~y~ErDVs~d 159 (289)
|++|+.. .|++|..+...|+.. ++.+..+.+...
T Consensus 1 i~~f~d~------~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 40 (98)
T cd02972 1 IVEFFDP------LCPYCYLFEPELEKLLYADDGGVRVVYRPFPLL 40 (98)
T ss_pred CeEEECC------CCHhHHhhhHHHHHHHhhcCCcEEEEEeccccC
Confidence 5678888 999999998888763 567777776543
No 145
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=87.74 E-value=1.3 Score=36.25 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=26.3
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHh------CCCcEEEEEcCCCh
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIEN------FGVAVSERDVSMDR 160 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~------~gV~y~ErDVs~d~ 160 (289)
+|.|+++ +|++|+.....+.. ....|..+|++.+.
T Consensus 23 lV~F~a~------WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~ 63 (117)
T cd02959 23 MLLIHKT------WCGACKALKPKFAESKEISELSHNFVMVNLEDDE 63 (117)
T ss_pred EEEEeCC------cCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC
Confidence 4456666 99999999887776 34568888888664
No 146
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=87.67 E-value=6.1 Score=29.79 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeE
Q 041824 128 RGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRY 207 (289)
Q Consensus 128 rgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~ 207 (289)
.|+....++|-++..+|+-.|++|+.+... ++. ..- -..||.|..+|+.
T Consensus 10 ~g~ps~sp~clk~~~~Lr~~~~~~~v~~~~-n~~--------~sp----------------------~gkLP~l~~~~~~ 58 (73)
T cd03078 10 WGLPSVDPECLAVLAYLKFAGAPLKVVPSN-NPW--------RSP----------------------TGKLPALLTSGTK 58 (73)
T ss_pred CCCCcCCHHHHHHHHHHHcCCCCEEEEecC-CCC--------CCC----------------------CCccCEEEECCEE
Confidence 456667799999999999999999765332 210 000 0246999999999
Q ss_pred EechHHHHHHHH
Q 041824 208 VGGAEEVLRIVE 219 (289)
Q Consensus 208 IGG~del~~L~E 219 (289)
|++++.+.+..+
T Consensus 59 i~d~~~Ii~~L~ 70 (73)
T cd03078 59 ISGPEKIIEYLR 70 (73)
T ss_pred ecChHHHHHHHH
Confidence 999999887654
No 147
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.42 E-value=1.7 Score=37.86 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=49.4
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCCh-hHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCC
Q 041824 121 VIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDR-GFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLP 199 (289)
Q Consensus 121 VVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~-~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LP 199 (289)
.+|... ..++|.+|+-+|..+|++|+.+.|+... ...+++.++.... .+ |
T Consensus 2 ~L~~~~------~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~g--------------------kV---P 52 (211)
T COG0625 2 KLYGSP------TSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLG--------------------KV---P 52 (211)
T ss_pred eeecCC------CCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCC--------------------CC---C
Confidence 356665 5599999999999999999999998764 3345555543221 45 9
Q ss_pred EEEECCe-EEechHHHHHHHHh
Q 041824 200 RVFVKGR-YVGGAEEVLRIVEE 220 (289)
Q Consensus 200 qIFI~G~-~IGG~del~~L~E~ 220 (289)
.+-.++- .|-....|.++.++
T Consensus 53 vL~~~~~~~l~ES~AI~~YL~~ 74 (211)
T COG0625 53 ALVDDDGEVLTESGAILEYLAE 74 (211)
T ss_pred EEeeCCCCeeecHHHHHHHHHh
Confidence 9988775 56666666655443
No 148
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=87.37 E-value=2.1 Score=35.65 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=29.8
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHHHHHhC-----C-CcEEEEEcCCChhHHHHHHHHHcc
Q 041824 117 ENKVVIYTTTLRGIRKTYEACKAAKSVIENF-----G-VAVSERDVSMDRGFKEELRELMMR 172 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~-----g-V~y~ErDVs~d~~~reEL~~llg~ 172 (289)
...|+.|+.+ -+.|+.|..+.-+|+.. + +.|-.+|++.++ ++....+-
T Consensus 28 ~~~v~~f~~~----~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f~V 81 (111)
T cd02965 28 GDLVLLLAGD----PVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARFGV 81 (111)
T ss_pred CCEEEEecCC----cccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHcCC
Confidence 3345555555 01299999999888653 2 456678887664 55555554
No 149
>PTZ00057 glutathione s-transferase; Provisional
Probab=87.28 E-value=6 Score=34.63 Aligned_cols=74 Identities=9% Similarity=0.265 Sum_probs=47.5
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChh-HHHHHHHHHcccccccCCCCCcchhhccCCCCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRG-FKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPV 197 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~-~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~ 197 (289)
+++||.-. .-..+.+++-+|+..||+|+.+.+....+ +. +.++..... .| ....
T Consensus 4 ~~~L~y~~------~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~-~~~~~~~~~--------~n----------P~g~ 58 (205)
T PTZ00057 4 EIVLYYFD------ARGKAELIRLIFAYLGIEYTDKRFGENGDAFI-EFKNFKKEK--------DT----------PFEQ 58 (205)
T ss_pred ceEEEecC------CCcchHHHHHHHHHcCCCeEEEeccccchHHH-HHHhccccC--------CC----------CCCC
Confidence 47889877 44778899999999999999998754221 11 112111000 01 1124
Q ss_pred CCEEEECCeEEechHHHHHH
Q 041824 198 LPRVFVKGRYVGGAEEVLRI 217 (289)
Q Consensus 198 LPqIFI~G~~IGG~del~~L 217 (289)
+|.+.+||..|....-+.+.
T Consensus 59 vP~L~~~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 59 VPILEMDNIIFAQSQAIVRY 78 (205)
T ss_pred CCEEEECCEEEecHHHHHHH
Confidence 49999999888777666653
No 150
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=87.13 E-value=2 Score=39.86 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHhCCCcEEE--EEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeEEe
Q 041824 132 KTYEACKAAKSVIENFGVAVSE--RDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRYVG 209 (289)
Q Consensus 132 ~tC~~C~~ak~iL~~~gV~y~E--rDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~IG 209 (289)
--|++|+++-..|..++++|.. +|++.-+ ++++.+.... .+ |.|-.|+..+-
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp---~~f~~~sp~~--------------------~~---P~l~~d~~~~t 72 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKP---EWFLDISPGG--------------------KP---PVLKFDEKWVT 72 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCc---HHHHhhCCCC--------------------CC---CeEEeCCceec
Confidence 4799999999999999999875 5555444 4666665432 34 99999999999
Q ss_pred chHHHHHHHHh
Q 041824 210 GAEEVLRIVEE 220 (289)
Q Consensus 210 G~del~~L~E~ 220 (289)
..+.+.+..|+
T Consensus 73 Ds~~Ie~~Lee 83 (221)
T KOG1422|consen 73 DSDKIEEFLEE 83 (221)
T ss_pred cHHHHHHHHHH
Confidence 99888765543
No 151
>PRK14300 chaperone protein DnaJ; Provisional
Probab=87.03 E-value=0.47 Score=46.44 Aligned_cols=66 Identities=23% Similarity=0.437 Sum_probs=41.6
Q ss_pred cHHHHhccCCCc---ccCCcccCCCCce------eEeCCCCCCcceeeeccCCCCccccccCCccCcCCcc---cCCCCC
Q 041824 222 WFGELIEGIPIR---KLKGVCQGCADVR------FFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV---LCPLCS 289 (289)
Q Consensus 222 ~L~~lL~~~~~~---~~~~~C~~Cgg~r------fvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv---rCp~C~ 289 (289)
.|++++.+.... .....|..|.|.+ ...|..|+|+-+++..... ......|+.|+-.|.+ +|+.|.
T Consensus 128 sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~--~~~~~~C~~C~G~G~~~~~~C~~C~ 205 (372)
T PRK14300 128 NLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGF--FTIEQACHKCQGNGQIIKNPCKKCH 205 (372)
T ss_pred EHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeece--EEEEEeCCCCCccceEeCCCCCCCC
Confidence 355555554321 1235677777754 5789999999776653211 1134689999988865 688773
No 152
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=86.92 E-value=2.3 Score=33.23 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=25.9
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhC------------CCcEEEEEcCCCh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENF------------GVAVSERDVSMDR 160 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~------------gV~y~ErDVs~d~ 160 (289)
-+|.|.++ +|++|++....|+.. .+.|-.+|.+.++
T Consensus 21 vlv~F~a~------wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~ 68 (108)
T cd02996 21 VLVNFYAD------WCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES 68 (108)
T ss_pred EEEEEECC------CCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH
Confidence 35666777 999999998877521 3667778887653
No 153
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=86.91 E-value=5.6 Score=31.68 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=25.1
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHH----h---CCCcEEEEEcCCCh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIE----N---FGVAVSERDVSMDR 160 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~----~---~gV~y~ErDVs~d~ 160 (289)
-||.|.++ +|+.|+....+|+ . .++.+-.+|++.++
T Consensus 27 vlV~F~a~------wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~ 69 (111)
T cd02963 27 YLIKITSD------WCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER 69 (111)
T ss_pred EEEEEECC------ccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH
Confidence 35556666 9999987765543 2 35778888887654
No 154
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=86.58 E-value=2.2 Score=37.44 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=24.3
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHh----C-CCcEEEEEcCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIEN----F-GVAVSERDVSM 158 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~----~-gV~y~ErDVs~ 158 (289)
.|||+... .+|+.|+.+..+|+. + .|.|..+|++.
T Consensus 85 ~VVV~Fya-----~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~ 124 (175)
T cd02987 85 TVVVHIYE-----PGIPGCAALNSSLLCLAAEYPAVKFCKIRASA 124 (175)
T ss_pred EEEEEEEC-----CCCchHHHHHHHHHHHHHHCCCeEEEEEeccc
Confidence 46655543 299999988877754 3 47788888874
No 155
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=86.30 E-value=4.8 Score=30.01 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCC--hhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEEC-CeEEechH
Q 041824 136 ACKAAKSVIENFGVAVSERDVSMD--RGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVK-GRYVGGAE 212 (289)
Q Consensus 136 ~C~~ak~iL~~~gV~y~ErDVs~d--~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~-G~~IGG~d 212 (289)
.+..++.+|+..||+|+.+.++.+ ....+|+.+..... ..+|.+-++ |..|-..-
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~----------------------g~vP~l~~~~~~~l~es~ 68 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMF----------------------GKVPALEDGDGFVLTESN 68 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTS----------------------SSSSEEEETTTEEEESHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhccccc----------------------ceeeEEEECCCCEEEcHH
Confidence 789999999999999998877653 33336666553220 134999999 98887766
Q ss_pred HHHHH
Q 041824 213 EVLRI 217 (289)
Q Consensus 213 el~~L 217 (289)
.+.+.
T Consensus 69 AI~~Y 73 (76)
T PF02798_consen 69 AILRY 73 (76)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 156
>PRK10996 thioredoxin 2; Provisional
Probab=86.00 E-value=4.5 Score=33.84 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=25.2
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHh----C--CCcEEEEEcCCChh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIEN----F--GVAVSERDVSMDRG 161 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~----~--gV~y~ErDVs~d~~ 161 (289)
-||.|+++ +|+.|+.....|.. + ++.|-.+|++.++.
T Consensus 55 vvv~F~a~------wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~ 97 (139)
T PRK10996 55 VVIDFWAP------WCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE 97 (139)
T ss_pred EEEEEECC------CCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH
Confidence 35556666 99999988777654 2 45666778876543
No 157
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=85.98 E-value=0.87 Score=49.56 Aligned_cols=52 Identities=19% Similarity=0.408 Sum_probs=36.8
Q ss_pred eEEechHHHHHHHHhCcHHHHhccCCCcc-----cCCcccCCCCcee------------EeCCCCCCcce
Q 041824 206 RYVGGAEEVLRIVEEGWFGELIEGIPIRK-----LKGVCQGCADVRF------------FPCFRCNGSCK 258 (289)
Q Consensus 206 ~~IGG~del~~L~E~G~L~~lL~~~~~~~-----~~~~C~~Cgg~rf------------vpC~~C~GS~K 258 (289)
.|+|-||++++|..+=. +...++..+.. .++.|+.|+|-++ |||+.|+|.+-
T Consensus 696 TYtg~Fd~IR~lFA~tp-eAK~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 696 TYTGVFDDIRELFAGTP-EAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred chhcchHHHHHHHhcCh-HHHHcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCccc
Confidence 47788999998875433 33334443322 3689999999886 89999999863
No 158
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=85.97 E-value=4.5 Score=30.64 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=24.9
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHh----C--CCcEEEEEcCCCh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIEN----F--GVAVSERDVSMDR 160 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~----~--gV~y~ErDVs~d~ 160 (289)
-+++|.++ +|+.|++.+..|.. + .+.+-.+|++.+.
T Consensus 21 vlv~f~a~------~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~ 62 (103)
T cd03001 21 WLVEFYAP------WCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ 62 (103)
T ss_pred EEEEEECC------CCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH
Confidence 35556666 99999998877754 2 4567778877554
No 159
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=84.85 E-value=0.24 Score=44.76 Aligned_cols=84 Identities=18% Similarity=0.336 Sum_probs=59.4
Q ss_pred CEEEECCeEEechHHHHHHHHhCcHHHHhccCCCcc--cCCcccCCCCceeEeCCCCCCcceeeeccCCCCccccccCCc
Q 041824 199 PRVFVKGRYVGGAEEVLRIVEEGWFGELIEGIPIRK--LKGVCQGCADVRFFPCFRCNGSCKLVINMQPRGKTAALRCPD 276 (289)
Q Consensus 199 PqIFI~G~~IGG~del~~L~E~G~L~~lL~~~~~~~--~~~~C~~Cgg~rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~ 276 (289)
|.-+++.-++=...||.++. +|.|.+.|+.+-... ....|+-|-+.+| .|..|+.+.-++--+ . ....||+.
T Consensus 104 ~~hl~~~~~~YSl~DL~~v~-~G~L~~~L~~l~~~~~~HV~~C~lC~~kGf-iCe~C~~~~~IfPF~-~---~~~~~C~~ 177 (202)
T PF13901_consen 104 RDHLLEDPHLYSLADLVQVK-SGQLLPQLEKLVQFAEKHVYSCELCQQKGF-ICEICNSDDIIFPFQ-I---DTTVRCPK 177 (202)
T ss_pred hhhhhhCCceEcHHHHHHHh-hchHHHHHHHHHHHHHHHHHHhHHHHhCCC-CCccCCCCCCCCCCC-C---CCeeeCCc
Confidence 77778888888889998874 799999988764322 2348999999998 799999984333222 1 13789999
Q ss_pred cCcCCc------ccCCCC
Q 041824 277 CNENGL------VLCPLC 288 (289)
Q Consensus 277 CNENGL------vrCp~C 288 (289)
|+--=- ..||.|
T Consensus 178 C~~v~H~~C~~~~~CpkC 195 (202)
T PF13901_consen 178 CKSVFHKSCFRKKSCPKC 195 (202)
T ss_pred CccccchhhcCCCCCCCc
Confidence 874211 457766
No 160
>PRK14284 chaperone protein DnaJ; Provisional
Probab=84.57 E-value=0.91 Score=44.75 Aligned_cols=51 Identities=31% Similarity=0.681 Sum_probs=33.5
Q ss_pred CCcccCCCCcee------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc---cCCCC
Q 041824 236 KGVCQGCADVRF------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV---LCPLC 288 (289)
Q Consensus 236 ~~~C~~Cgg~rf------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv---rCp~C 288 (289)
...|..|.|.+. ..|..|+|+-.++..... ......|+.|+-.|.+ .|+.|
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~--~~~~~~C~~C~G~G~~~~~~C~~C 217 (391)
T PRK14284 158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGF--FSMASTCPECGGEGRVITDPCSVC 217 (391)
T ss_pred eccCCCCcccccCCCCCCeecCccCCeeEEEEEece--EEEEEECCCCCCCCcccCCcCCCC
Confidence 357888876654 679999999765543211 1134688888888865 57777
No 161
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=84.43 E-value=2.8 Score=35.07 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHH----HhC--CCcEEEEEcCCCh
Q 041824 133 TYEACKAAKSVI----ENF--GVAVSERDVSMDR 160 (289)
Q Consensus 133 tC~~C~~ak~iL----~~~--gV~y~ErDVs~d~ 160 (289)
+|+.|+.+.-+| +.+ ++.|..+|+...+
T Consensus 39 WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~ 72 (119)
T cd02952 39 WCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRP 72 (119)
T ss_pred CCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcc
Confidence 999999776655 444 4788899997643
No 162
>PRK14285 chaperone protein DnaJ; Provisional
Probab=84.14 E-value=0.98 Score=44.20 Aligned_cols=51 Identities=27% Similarity=0.615 Sum_probs=32.7
Q ss_pred CCcccCCCCce------eEeCCCCCCcceeeeccCCCCccccccCCccCcCCcc---cCCCC
Q 041824 236 KGVCQGCADVR------FFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV---LCPLC 288 (289)
Q Consensus 236 ~~~C~~Cgg~r------fvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv---rCp~C 288 (289)
...|..|.|.+ -..|..|+|+-.+...... ......|+.|+-.|-+ .|+.|
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~--~~~~~~C~~C~G~G~~~~~~C~~C 205 (365)
T PRK14285 146 NMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGF--FRVTTTCPKCYGNGKIISNPCKSC 205 (365)
T ss_pred cccCCCCCCcccCCCCCCccCCCccCceeEEecCce--eEEeeecCCCCCcccccCCCCCCC
Confidence 35677777765 3578899998766543211 1134678888888754 57776
No 163
>PRK14298 chaperone protein DnaJ; Provisional
Probab=84.04 E-value=1 Score=44.32 Aligned_cols=66 Identities=23% Similarity=0.542 Sum_probs=39.8
Q ss_pred HHHHhccCCCc---ccCCcccCCCCcee------EeCCCCCCcceeeeccCCC-C-ccccccCCccCcCCcc---cCCCC
Q 041824 223 FGELIEGIPIR---KLKGVCQGCADVRF------FPCFRCNGSCKLVINMQPR-G-KTAALRCPDCNENGLV---LCPLC 288 (289)
Q Consensus 223 L~~lL~~~~~~---~~~~~C~~Cgg~rf------vpC~~C~GS~K~~~~~~~~-g-~~~~~rC~~CNENGLv---rCp~C 288 (289)
|++++.+.... .....|..|.|.+. ..|..|+|+-.++...... + ......|+.|+-.|.+ +|+.|
T Consensus 125 lee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 204 (377)
T PRK14298 125 LEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVC 204 (377)
T ss_pred HHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCC
Confidence 55555543321 12357888887665 6799999997665432111 1 1124678888888854 57777
No 164
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=83.94 E-value=3.9 Score=31.44 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=25.7
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhC------CCcEEEEEcCCCh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENF------GVAVSERDVSMDR 160 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~------gV~y~ErDVs~d~ 160 (289)
-+|.|+++ +|+.|+++...++.. .+.+-.+|++.++
T Consensus 21 ~~v~f~a~------wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~ 62 (101)
T cd03003 21 WFVNFYSP------RCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR 62 (101)
T ss_pred EEEEEECC------CChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH
Confidence 35566666 999999988887542 2556778887654
No 165
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=83.69 E-value=4.1 Score=30.69 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=24.4
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHh----C----CCcEEEEEcCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIEN----F----GVAVSERDVSM 158 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~----~----gV~y~ErDVs~ 158 (289)
-|+.|+++ +|+.|++...+++. + ++.+-.+|.+.
T Consensus 21 ~~v~f~a~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (105)
T cd02998 21 VLVEFYAP------WCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62 (105)
T ss_pred EEEEEECC------CCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence 46677777 99999988777654 2 35566777776
No 166
>PRK14295 chaperone protein DnaJ; Provisional
Probab=83.63 E-value=0.83 Score=45.09 Aligned_cols=51 Identities=29% Similarity=0.746 Sum_probs=33.4
Q ss_pred CCcccCCCCcee------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc---cCCCC
Q 041824 236 KGVCQGCADVRF------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV---LCPLC 288 (289)
Q Consensus 236 ~~~C~~Cgg~rf------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv---rCp~C 288 (289)
...|..|.|.+. ..|..|+|+-.+.... ++.....+|+.|+-.|.+ .|+.|
T Consensus 166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~~~~~C~~C 225 (389)
T PRK14295 166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--GGFSLSEPCPDCKGRGLIADDPCLVC 225 (389)
T ss_pred cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--cceEEEEecCCCcceeEEeccCCCCC
Confidence 346777776553 6788999887665442 222245688888888865 47777
No 167
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.43 E-value=0.94 Score=44.48 Aligned_cols=53 Identities=28% Similarity=0.534 Sum_probs=36.7
Q ss_pred CcccCCCCcee-----EeCCCCCCcceeeeccCCCC---ccccccCCccCcCCcc-----cCCCCC
Q 041824 237 GVCQGCADVRF-----FPCFRCNGSCKLVINMQPRG---KTAALRCPDCNENGLV-----LCPLCS 289 (289)
Q Consensus 237 ~~C~~Cgg~rf-----vpC~~C~GS~K~~~~~~~~g---~~~~~rC~~CNENGLv-----rCp~C~ 289 (289)
..|..|-|.++ .+|..|+|+.-.....+... ....++|..||..|-+ +|+.|.
T Consensus 128 ~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~ 193 (337)
T KOG0712|consen 128 FICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCS 193 (337)
T ss_pred ccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccc
Confidence 46777766655 45999999964332211111 2346899999999999 999994
No 168
>PRK14287 chaperone protein DnaJ; Provisional
Probab=83.42 E-value=1.1 Score=43.90 Aligned_cols=54 Identities=24% Similarity=0.619 Sum_probs=36.1
Q ss_pred CCcccCCCCce------eEeCCCCCCcceeeeccCCC-Cc-cccccCCccCcCCcc---cCCCCC
Q 041824 236 KGVCQGCADVR------FFPCFRCNGSCKLVINMQPR-GK-TAALRCPDCNENGLV---LCPLCS 289 (289)
Q Consensus 236 ~~~C~~Cgg~r------fvpC~~C~GS~K~~~~~~~~-g~-~~~~rC~~CNENGLv---rCp~C~ 289 (289)
...|..|.|.+ ...|..|+|+-.+....... |. .....|+.|+-.|.+ .|+.|.
T Consensus 138 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK14287 138 EETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCG 202 (371)
T ss_pred eccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCC
Confidence 35788887765 46799999997665443111 10 124689999999976 588773
No 169
>PRK14290 chaperone protein DnaJ; Provisional
Probab=83.25 E-value=1.1 Score=43.73 Aligned_cols=52 Identities=25% Similarity=0.646 Sum_probs=34.2
Q ss_pred CCcccCCCCcee-----EeCCCCCCcceeeeccCCCCcc---ccccCCccCcCCc---ccCCCC
Q 041824 236 KGVCQGCADVRF-----FPCFRCNGSCKLVINMQPRGKT---AALRCPDCNENGL---VLCPLC 288 (289)
Q Consensus 236 ~~~C~~Cgg~rf-----vpC~~C~GS~K~~~~~~~~g~~---~~~rC~~CNENGL---vrCp~C 288 (289)
...|..|.|.+. ..|..|+|+-++..... .|.. ...+|+.|+-.|- ..|+.|
T Consensus 149 ~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~-~g~~~~~~~~~C~~C~G~G~~~~~~C~~C 211 (365)
T PRK14290 149 NAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRG-QGFFRMVTVTTCRTCGGRGRIPEEKCPRC 211 (365)
T ss_pred cccCCCCccccCCCCCCccCCCCCCcCEEEEEec-cCeEEEEEEEeCCCCCCceeEccCCCCCC
Confidence 356777777664 67999999976654432 1211 1357888888884 468877
No 170
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=82.80 E-value=5.3 Score=30.73 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=23.6
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhC------CCcEEEEEcCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENF------GVAVSERDVSM 158 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~------gV~y~ErDVs~ 158 (289)
-+|.|.++ +|+.|++....|+.. .+.+-.+|++.
T Consensus 21 ~lv~f~a~------wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~ 60 (109)
T cd03002 21 TLVEFYAP------WCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE 60 (109)
T ss_pred EEEEEECC------CCHHHHhhChHHHHHHHHhcCCceEEEEecCc
Confidence 46667777 999999887766543 34556667765
No 171
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=82.76 E-value=5.2 Score=33.36 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=31.9
Q ss_pred CCcEEEEEecCCCCCCCCH--HHH----------HHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcc
Q 041824 117 ENKVVIYTTTLRGIRKTYE--ACK----------AAKSVIENFGVAVSERDVSMDRGFKEELRELMMR 172 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~--~C~----------~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~ 172 (289)
+.-||+|..+ .+|. +|+ .+.++|+..+|.+-.+|++.++ +|.+..|.
T Consensus 27 ~~~vvv~f~a-----~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~----~La~~~~I 85 (120)
T cd03065 27 DVLCLLYHEP-----VESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA----KVAKKLGL 85 (120)
T ss_pred CceEEEEECC-----CcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH----HHHHHcCC
Confidence 4457788777 1443 586 3556677779999999999775 45555554
No 172
>PRK14292 chaperone protein DnaJ; Provisional
Probab=82.72 E-value=1.2 Score=43.59 Aligned_cols=67 Identities=21% Similarity=0.506 Sum_probs=41.2
Q ss_pred cHHHHhccCCCc---ccCCcccCCCCce-------eEeCCCCCCcceeeeccCC-CCc-cccccCCccCcCCcc---cCC
Q 041824 222 WFGELIEGIPIR---KLKGVCQGCADVR-------FFPCFRCNGSCKLVINMQP-RGK-TAALRCPDCNENGLV---LCP 286 (289)
Q Consensus 222 ~L~~lL~~~~~~---~~~~~C~~Cgg~r-------fvpC~~C~GS~K~~~~~~~-~g~-~~~~rC~~CNENGLv---rCp 286 (289)
.|++++.+..+. .....|..|.|.+ ...|..|+|+-.+...... .|. .....|+.|+-.|.+ .|+
T Consensus 122 sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~ 201 (371)
T PRK14292 122 TLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCT 201 (371)
T ss_pred cHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCC
Confidence 355665553321 1235788888765 4679999999766543210 010 013589999888866 677
Q ss_pred CC
Q 041824 287 LC 288 (289)
Q Consensus 287 ~C 288 (289)
.|
T Consensus 202 ~C 203 (371)
T PRK14292 202 VC 203 (371)
T ss_pred CC
Confidence 77
No 173
>PRK14286 chaperone protein DnaJ; Provisional
Probab=82.58 E-value=0.98 Score=44.30 Aligned_cols=65 Identities=23% Similarity=0.453 Sum_probs=37.4
Q ss_pred cHHHHhccCCCc---ccCCcccCCCCcee------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc---cCCCC
Q 041824 222 WFGELIEGIPIR---KLKGVCQGCADVRF------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV---LCPLC 288 (289)
Q Consensus 222 ~L~~lL~~~~~~---~~~~~C~~Cgg~rf------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv---rCp~C 288 (289)
.|++++.+.... .....|..|.|.+. ..|..|+|+-.+...... ......|+.|+--|.+ +|+.|
T Consensus 133 tLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~--~~~~~~C~~C~G~G~~~~~~C~~C 209 (372)
T PRK14286 133 SLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGF--FSVATTCPTCRGKGTVISNPCKTC 209 (372)
T ss_pred EHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEece--EEEEEeCCCCCceeeEecccCCCC
Confidence 355555543321 12357888887664 678888888755443211 1124577777777643 56666
No 174
>PRK14282 chaperone protein DnaJ; Provisional
Probab=82.45 E-value=1.3 Score=43.33 Aligned_cols=52 Identities=21% Similarity=0.669 Sum_probs=33.7
Q ss_pred CcccCCCCce------eEeCCCCCCcceeeeccCCC-C-ccccccCCccCcCCcc---cCCCC
Q 041824 237 GVCQGCADVR------FFPCFRCNGSCKLVINMQPR-G-KTAALRCPDCNENGLV---LCPLC 288 (289)
Q Consensus 237 ~~C~~Cgg~r------fvpC~~C~GS~K~~~~~~~~-g-~~~~~rC~~CNENGLv---rCp~C 288 (289)
..|..|.|.+ ...|..|+|+-.++...... | ......|+.|+-.|.+ .|+.|
T Consensus 153 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 215 (369)
T PRK14282 153 ETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHEC 215 (369)
T ss_pred ccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCC
Confidence 5677777755 46799999997665432110 1 1124688888888865 57776
No 175
>PRK14301 chaperone protein DnaJ; Provisional
Probab=82.20 E-value=0.99 Score=44.29 Aligned_cols=65 Identities=26% Similarity=0.531 Sum_probs=37.6
Q ss_pred cHHHHhccCCCc---ccCCcccCCCCcee------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc---cCCCC
Q 041824 222 WFGELIEGIPIR---KLKGVCQGCADVRF------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV---LCPLC 288 (289)
Q Consensus 222 ~L~~lL~~~~~~---~~~~~C~~Cgg~rf------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv---rCp~C 288 (289)
.|++++.+.... .....|..|.|.+. ..|..|+|+-.+...... ......|+.|+-.|.+ .|+.|
T Consensus 127 tLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~--~~~~~~C~~C~G~G~~~~~~C~~C 203 (373)
T PRK14301 127 SFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGF--FQIAVPCPVCRGEGRVITHPCPKC 203 (373)
T ss_pred cHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeee--EEEEEeCCCCCceeeecCCCCCCC
Confidence 355555543321 12356777777654 568888888766543211 1124678888777754 57766
No 176
>PRK14291 chaperone protein DnaJ; Provisional
Probab=82.18 E-value=1.1 Score=44.01 Aligned_cols=64 Identities=22% Similarity=0.481 Sum_probs=39.9
Q ss_pred HHHHhccCCCc---ccCCcccCCCCce------eEeCCCCCCcceeeeccCCCCccccccCCccCcCCcc--cCCCC
Q 041824 223 FGELIEGIPIR---KLKGVCQGCADVR------FFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV--LCPLC 288 (289)
Q Consensus 223 L~~lL~~~~~~---~~~~~C~~Cgg~r------fvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv--rCp~C 288 (289)
|++++.+.... .....|..|.|.+ ...|..|+|+-.++..... ......|+.|+--|.+ .|+.|
T Consensus 140 Lee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~--~~~~~~C~~C~G~G~~~~~C~~C 214 (382)
T PRK14291 140 LEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGF--FRISQTCPTCGGEGVLREPCSKC 214 (382)
T ss_pred HHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecce--EEEEecCCCCCCceEEccCCCCC
Confidence 55555543321 1235788888766 4679999999766554211 1234688888888854 47776
No 177
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=82.06 E-value=1.3 Score=43.73 Aligned_cols=21 Identities=29% Similarity=0.741 Sum_probs=16.5
Q ss_pred CcccCCCCceeEeCCCCCCcc
Q 041824 237 GVCQGCADVRFFPCFRCNGSC 257 (289)
Q Consensus 237 ~~C~~Cgg~rfvpC~~C~GS~ 257 (289)
..|.+|-|.+-+.|..|||+-
T Consensus 188 ~~ch~c~gRG~~vc~gc~g~G 208 (406)
T KOG2813|consen 188 TFCHACLGRGAMVCHGCSGSG 208 (406)
T ss_pred hhhhcccCCCceeccCcCCCC
Confidence 468888888888888888775
No 178
>PRK14294 chaperone protein DnaJ; Provisional
Probab=82.05 E-value=1.2 Score=43.49 Aligned_cols=51 Identities=25% Similarity=0.585 Sum_probs=32.5
Q ss_pred CCcccCCCCcee------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc---cCCCC
Q 041824 236 KGVCQGCADVRF------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV---LCPLC 288 (289)
Q Consensus 236 ~~~C~~Cgg~rf------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv---rCp~C 288 (289)
...|..|.|.+. ..|..|+|+-.+...... ......|+.|+-.|.+ .|+.|
T Consensus 144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~--~~~~~~C~~C~G~G~~~~~~C~~C 203 (366)
T PRK14294 144 LETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGF--FSIRTTCPRCRGMGKVIVSPCKTC 203 (366)
T ss_pred cccCCCCCCccccCCCCcccCCCcCCeEEEEEEeee--EEEEeeCCCCCCcCeecCcCCCCC
Confidence 356777777654 578999988765533211 1134678888877755 57666
No 179
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=81.90 E-value=2.1 Score=39.24 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=51.7
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEE
Q 041824 122 IYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRV 201 (289)
Q Consensus 122 VYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqI 201 (289)
+|.-. .||+|.+||.++--++|++++.=+..|.+.- =....|.+ .| |.+
T Consensus 3 LYIYd------HCPfcvrarmi~Gl~nipve~~vL~nDDe~T--p~rmiG~K--------------------qV---PiL 51 (215)
T COG2999 3 LYIYD------HCPFCVRARMIFGLKNIPVELHVLLNDDEET--PIRMIGQK--------------------QV---PIL 51 (215)
T ss_pred eeEec------cChHHHHHHHHhhccCCChhhheeccCcccC--hhhhhccc--------------------cc---ceE
Confidence 56666 9999999999999999999988777654311 12233433 34 776
Q ss_pred EE-CCeEEechHHHHHHHHhCcHHHHhcc
Q 041824 202 FV-KGRYVGGAEEVLRIVEEGWFGELIEG 229 (289)
Q Consensus 202 FI-~G~~IGG~del~~L~E~G~L~~lL~~ 229 (289)
.- +|++++-.=++.+...+-.=..+|.+
T Consensus 52 ~Kedg~~m~ESlDIV~y~d~~~~~~~lt~ 80 (215)
T COG2999 52 QKEDGRAMPESLDIVHYVDELDGKPLLTG 80 (215)
T ss_pred EccccccchhhhHHHHHHHHhcCchhhcc
Confidence 64 88999887777766544333344433
No 180
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=81.53 E-value=4.3 Score=30.68 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=24.2
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhC---------CCcEEEEEcCCCh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENF---------GVAVSERDVSMDR 160 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~---------gV~y~ErDVs~d~ 160 (289)
-+|.|+++ +|+.|+.....|+.. .+.+-.+|.+.+.
T Consensus 19 ~lv~f~a~------wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~ 63 (102)
T cd03005 19 HFVKFFAP------WCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR 63 (102)
T ss_pred EEEEEECC------CCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh
Confidence 45666666 999999877666432 3566677776554
No 181
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=81.47 E-value=1.9 Score=32.09 Aligned_cols=37 Identities=24% Similarity=0.683 Sum_probs=25.2
Q ss_pred CCcccCCCCcee---------------EeCCCCCCcceeeeccCCCCccccccCCccCcCC
Q 041824 236 KGVCQGCADVRF---------------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENG 281 (289)
Q Consensus 236 ~~~C~~Cgg~rf---------------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENG 281 (289)
...|..|.|.++ .+|+.|+|+-+++ + ..+|+.|+-+|
T Consensus 15 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~--------~~~C~~C~G~g 66 (66)
T PF00684_consen 15 PKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E--------KDPCKTCKGSG 66 (66)
T ss_dssp -EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T--------SSB-SSSTTSS
T ss_pred CcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C--------CCCCCCCCCcC
Confidence 458999998776 4799999998886 3 35899998654
No 182
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=81.44 E-value=4.7 Score=33.96 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=24.1
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHh----C--CCcEEEEEcCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIEN----F--GVAVSERDVSMD 159 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~----~--gV~y~ErDVs~d 159 (289)
-||.|.++ +|+.|+.....|.. + .+.|..+|++.+
T Consensus 23 vvV~F~A~------WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~ 63 (142)
T cd02950 23 TLVEFYAD------WCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNP 63 (142)
T ss_pred EEEEEECC------cCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCc
Confidence 35556666 99999988877764 2 356777777643
No 183
>PRK14285 chaperone protein DnaJ; Provisional
Probab=81.33 E-value=1.3 Score=43.43 Aligned_cols=38 Identities=24% Similarity=0.690 Sum_probs=29.3
Q ss_pred CcccCCCCceeE-----------eCCCCCCcceeeeccCCCCccccccCCccCcCCccc
Q 041824 237 GVCQGCADVRFF-----------PCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLVL 284 (289)
Q Consensus 237 ~~C~~Cgg~rfv-----------pC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLvr 284 (289)
..|..|.|.+.+ +|..|+|.-++. ..+|..|+-.|.++
T Consensus 164 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~ 212 (365)
T PRK14285 164 SICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII----------SNPCKSCKGKGSLK 212 (365)
T ss_pred ccCCCccCceeEEecCceeEEeeecCCCCCccccc----------CCCCCCCCCCCEEe
Confidence 479999997654 899999987663 24799999888763
No 184
>PRK14288 chaperone protein DnaJ; Provisional
Probab=81.31 E-value=1.3 Score=43.34 Aligned_cols=50 Identities=26% Similarity=0.660 Sum_probs=31.2
Q ss_pred CcccCCCCcee-----EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc---cCCCC
Q 041824 237 GVCQGCADVRF-----FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV---LCPLC 288 (289)
Q Consensus 237 ~~C~~Cgg~rf-----vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv---rCp~C 288 (289)
..|..|.|.+. ..|..|+|+-.+...... ......|+.|+-.|.+ .|+.|
T Consensus 141 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~--~~~~~~C~~C~G~G~~~~~~C~~C 198 (369)
T PRK14288 141 SVCESCDGTGAKDKALETCKQCNGQGQVFMRQGF--MSFAQTCGACQGKGKIIKTPCQAC 198 (369)
T ss_pred ccCCCCCCcccCCCCCcCCCCCCCCcEEEEEece--EEEEEecCCCCCCceEccccCccC
Confidence 46888877663 568888888766544311 1124578888777743 46666
No 185
>PRK14289 chaperone protein DnaJ; Provisional
Probab=80.97 E-value=1.4 Score=43.33 Aligned_cols=66 Identities=26% Similarity=0.544 Sum_probs=40.1
Q ss_pred HHHHhccCCCc---ccCCcccCCCCce------eEeCCCCCCcceeeeccCCC-C-ccccccCCccCcCCcc---cCCCC
Q 041824 223 FGELIEGIPIR---KLKGVCQGCADVR------FFPCFRCNGSCKLVINMQPR-G-KTAALRCPDCNENGLV---LCPLC 288 (289)
Q Consensus 223 L~~lL~~~~~~---~~~~~C~~Cgg~r------fvpC~~C~GS~K~~~~~~~~-g-~~~~~rC~~CNENGLv---rCp~C 288 (289)
|++++.+.... .....|..|.|.+ ...|..|+|+-+++...... | ......|+.|+-.|-+ +|+.|
T Consensus 138 Lee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 217 (386)
T PRK14289 138 LKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKC 217 (386)
T ss_pred HHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCC
Confidence 55555553321 1235788887655 47899999997766543110 1 1124688888888865 67777
No 186
>PRK14296 chaperone protein DnaJ; Provisional
Probab=80.71 E-value=1.7 Score=42.76 Aligned_cols=66 Identities=26% Similarity=0.550 Sum_probs=39.5
Q ss_pred cHHHHhccCCCc---ccCCcccCCCCcee------EeCCCCCCcceeeeccCCCCcc---ccccCCccCcCCcc---cCC
Q 041824 222 WFGELIEGIPIR---KLKGVCQGCADVRF------FPCFRCNGSCKLVINMQPRGKT---AALRCPDCNENGLV---LCP 286 (289)
Q Consensus 222 ~L~~lL~~~~~~---~~~~~C~~Cgg~rf------vpC~~C~GS~K~~~~~~~~g~~---~~~rC~~CNENGLv---rCp 286 (289)
.|++++.+.... .....|..|.|.+. ..|..|+|+-.++..... |.+ ....|+.|+--|-+ .|+
T Consensus 132 tlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~-g~~~~q~~~~C~~C~G~G~~~~~~C~ 210 (372)
T PRK14296 132 TFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNM-GFFQFQQSAKCNVCNGAGKIIKNKCK 210 (372)
T ss_pred cHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEec-cceEEEEEecCCCcCCcceeeccccc
Confidence 355555554321 12356888887664 579999999766554321 111 13578888877765 477
Q ss_pred CC
Q 041824 287 LC 288 (289)
Q Consensus 287 ~C 288 (289)
.|
T Consensus 211 ~C 212 (372)
T PRK14296 211 NC 212 (372)
T ss_pred CC
Confidence 77
No 187
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=80.62 E-value=6.3 Score=31.02 Aligned_cols=33 Identities=6% Similarity=0.064 Sum_probs=24.0
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhC-----CCcEEEEEcC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENF-----GVAVSERDVS 157 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~-----gV~y~ErDVs 157 (289)
-||.|+.+ +|+.|++..-.|+.. ++.+-.+|.+
T Consensus 21 vlV~F~a~------WC~~C~~~~p~l~~la~~~~~~~~~~vd~~ 58 (100)
T cd02999 21 TAVLFYAS------WCPFSASFRPHFNALSSMFPQIRHLAIEES 58 (100)
T ss_pred EEEEEECC------CCHHHHhHhHHHHHHHHHhccCceEEEECC
Confidence 46667777 999999998777543 4666667765
No 188
>PRK14873 primosome assembly protein PriA; Provisional
Probab=80.32 E-value=1.9 Score=45.79 Aligned_cols=46 Identities=28% Similarity=0.576 Sum_probs=35.0
Q ss_pred CCcccCCCCceeEeCCCCCCcceeeeccCCCCccccccCCccCcCC-cccCCCCC
Q 041824 236 KGVCQGCADVRFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENG-LVLCPLCS 289 (289)
Q Consensus 236 ~~~C~~Cgg~rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENG-LvrCp~C~ 289 (289)
.-.|..||- -+.|++|+++...+... + .++|.+|+-.- --+||.|.
T Consensus 383 ~l~C~~Cg~--~~~C~~C~~~L~~h~~~---~---~l~Ch~CG~~~~p~~Cp~Cg 429 (665)
T PRK14873 383 SLACARCRT--PARCRHCTGPLGLPSAG---G---TPRCRWCGRAAPDWRCPRCG 429 (665)
T ss_pred eeEhhhCcC--eeECCCCCCceeEecCC---C---eeECCCCcCCCcCccCCCCc
Confidence 358999996 48899999997765432 2 68999997643 45899994
No 189
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=80.29 E-value=1.5 Score=42.35 Aligned_cols=53 Identities=25% Similarity=0.618 Sum_probs=33.6
Q ss_pred CCcccCCCCce------eEeCCCCCCcceeeeccCCC-C-ccccccCCccCcCCcc---cCCCC
Q 041824 236 KGVCQGCADVR------FFPCFRCNGSCKLVINMQPR-G-KTAALRCPDCNENGLV---LCPLC 288 (289)
Q Consensus 236 ~~~C~~Cgg~r------fvpC~~C~GS~K~~~~~~~~-g-~~~~~rC~~CNENGLv---rCp~C 288 (289)
...|..|.|.+ ...|..|+|+-.++...... | ......|+.|+-.|.+ .|+.|
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 206 (354)
T TIGR02349 143 KESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTC 206 (354)
T ss_pred CCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCC
Confidence 35788887766 56799999987655433110 0 0113578888888865 47777
No 190
>PRK11752 putative S-transferase; Provisional
Probab=80.22 E-value=9 Score=35.36 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=49.4
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhC------CCcEEEEEcCCC--hhHHHHHHHHHcccccccCCCCCcch
Q 041824 114 PDGENKVVIYTTTLRGIRKTYEACKAAKSVIENF------GVAVSERDVSMD--RGFKEELRELMMRRRRRSSSSNNNEE 185 (289)
Q Consensus 114 p~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~------gV~y~ErDVs~d--~~~reEL~~llg~~~~~~~~s~~~~~ 185 (289)
+.+.+.+.+|+. ..++|.+|+-+|+.. |++|+.+.|... .....|+.++.-.
T Consensus 39 ~~~~~~~~Ly~~-------~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~------------- 98 (264)
T PRK11752 39 PVGKHPLQLYSL-------GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN------------- 98 (264)
T ss_pred CCCCCCeEEecC-------CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-------------
Confidence 455667999974 569999999999986 888987776542 1223455544221
Q ss_pred hhccCCCCCCCCCCEEEECC----eEEechHHHHHHHH
Q 041824 186 EAESSVQPLPPVLPRVFVKG----RYVGGAEEVLRIVE 219 (289)
Q Consensus 186 ~g~~t~~~tv~~LPqIFI~G----~~IGG~del~~L~E 219 (289)
.++ |.+..++ ..|--...|.++.+
T Consensus 99 -------GkV---P~Lv~~dg~~~~~L~ES~AIl~YL~ 126 (264)
T PRK11752 99 -------SKI---PALLDRSGNPPIRVFESGAILLYLA 126 (264)
T ss_pred -------CCC---CEEEeCCCCCCeEEEcHHHHHHHHH
Confidence 134 9998752 46666666666443
No 191
>PRK14280 chaperone protein DnaJ; Provisional
Probab=80.03 E-value=1.6 Score=42.90 Aligned_cols=66 Identities=27% Similarity=0.612 Sum_probs=39.0
Q ss_pred HHHHhccCCCc---ccCCcccCCCCce------eEeCCCCCCcceeeeccCCC-C-ccccccCCccCcCCcc---cCCCC
Q 041824 223 FGELIEGIPIR---KLKGVCQGCADVR------FFPCFRCNGSCKLVINMQPR-G-KTAALRCPDCNENGLV---LCPLC 288 (289)
Q Consensus 223 L~~lL~~~~~~---~~~~~C~~Cgg~r------fvpC~~C~GS~K~~~~~~~~-g-~~~~~rC~~CNENGLv---rCp~C 288 (289)
|++++.+.... .....|..|.|.+ ...|..|+|+-.+....... | ......|+.|+-.|.+ .|+.|
T Consensus 127 Lee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 206 (376)
T PRK14280 127 FEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTC 206 (376)
T ss_pred HHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCC
Confidence 55555543321 1235788888766 46799999987665432110 1 0124578888888864 57777
No 192
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=79.84 E-value=11 Score=28.54 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCChhH---HHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeEEech
Q 041824 135 EACKAAKSVIENFGVAVSERDVSMDRGF---KEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRYVGGA 211 (289)
Q Consensus 135 ~~C~~ak~iL~~~gV~y~ErDVs~d~~~---reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~IGG~ 211 (289)
+.|.+++.+|+..||+|+.+.|+..... .++........ + . ....+|.+..||..+.-.
T Consensus 10 ~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~-------------~----~-P~g~vP~L~~~g~~l~ES 71 (82)
T cd03075 10 GLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKL-------------G----L-DFPNLPYYIDGDVKLTQS 71 (82)
T ss_pred cccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhc-------------C----C-cCCCCCEEEECCEEEeeh
Confidence 5788999999999999998888753211 12222111000 0 0 012449999999877766
Q ss_pred HHHHHHH
Q 041824 212 EEVLRIV 218 (289)
Q Consensus 212 del~~L~ 218 (289)
..+....
T Consensus 72 ~AIl~YL 78 (82)
T cd03075 72 NAILRYI 78 (82)
T ss_pred HHHHHHH
Confidence 6655543
No 193
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=79.79 E-value=5.8 Score=29.99 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=23.4
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHHHHH----h----CCCcEEEEEcCC
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKSVIE----N----FGVAVSERDVSM 158 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~iL~----~----~gV~y~ErDVs~ 158 (289)
.-+|.|+++ +|+.|+++...|. . ..+.+-.+|++.
T Consensus 19 ~~~v~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 61 (104)
T cd02997 19 HVLVMFYAP------WCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK 61 (104)
T ss_pred CEEEEEECC------CCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC
Confidence 446677777 9999998865443 2 225566777775
No 194
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=79.68 E-value=7.3 Score=30.72 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=26.3
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHHHHHhC-------CCcEEEEEcCC
Q 041824 117 ENKVVIYTTTLRGIRKTYEACKAAKSVIENF-------GVAVSERDVSM 158 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~-------gV~y~ErDVs~ 158 (289)
..-+|.|.++ +|++|++....|+.. ++.+-.+|++.
T Consensus 22 k~vlv~f~a~------wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 22 QSTLVVLYAP------WCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred CCEEEEEECC------CCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 3457777788 999999998877542 46666777765
No 195
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=79.41 E-value=1.7 Score=43.62 Aligned_cols=51 Identities=31% Similarity=0.660 Sum_probs=30.2
Q ss_pred CcccCCCCce-----eEeCCCCCCcceeeeccCCCCcc---ccccCCccCcCCcc-----cCCCC
Q 041824 237 GVCQGCADVR-----FFPCFRCNGSCKLVINMQPRGKT---AALRCPDCNENGLV-----LCPLC 288 (289)
Q Consensus 237 ~~C~~Cgg~r-----fvpC~~C~GS~K~~~~~~~~g~~---~~~rC~~CNENGLv-----rCp~C 288 (289)
..|..|.|.+ ...|..|+|+-.++..... |.. ....|+.|+--|-+ .|+.|
T Consensus 151 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~-g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C 214 (421)
T PTZ00037 151 VICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQM-GSMIHQTQSTCNSCNGQGKIIPESKKCKNC 214 (421)
T ss_pred ccccccCCCCCCCCCCccCCCCCCCCeEEEEEee-cceeeEEEEeCCCCCCcceeccccccCCcC
Confidence 4666666655 3578888888654332211 111 23478888877765 47777
No 196
>PRK14278 chaperone protein DnaJ; Provisional
Probab=79.12 E-value=2 Score=42.18 Aligned_cols=67 Identities=22% Similarity=0.489 Sum_probs=36.9
Q ss_pred cHHHHhccCCCc---ccCCcccCCCCce------eEeCCCCCCcceeeeccCC-CCc-cccccCCccCcCCcc---cCCC
Q 041824 222 WFGELIEGIPIR---KLKGVCQGCADVR------FFPCFRCNGSCKLVINMQP-RGK-TAALRCPDCNENGLV---LCPL 287 (289)
Q Consensus 222 ~L~~lL~~~~~~---~~~~~C~~Cgg~r------fvpC~~C~GS~K~~~~~~~-~g~-~~~~rC~~CNENGLv---rCp~ 287 (289)
.|+++..+.... .....|..|.|.+ ...|..|+|+-.+...... .|. .....|+.|+-.|-+ .|+.
T Consensus 122 tLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 201 (378)
T PRK14278 122 DLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHE 201 (378)
T ss_pred EHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCC
Confidence 355555543321 1235677777765 4578888888655433210 011 123577888777754 4776
Q ss_pred C
Q 041824 288 C 288 (289)
Q Consensus 288 C 288 (289)
|
T Consensus 202 C 202 (378)
T PRK14278 202 C 202 (378)
T ss_pred C
Confidence 6
No 197
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=78.95 E-value=8.4 Score=35.51 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=25.0
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhC----C--CcEEEEEcCCCh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENF----G--VAVSERDVSMDR 160 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~----g--V~y~ErDVs~d~ 160 (289)
-+|.|+++ +|+.|++....++.. + |.+..+|++.++
T Consensus 55 vlV~FyAp------WC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~ 96 (224)
T PTZ00443 55 WFVKFYAP------WCSHCRKMAPAWERLAKALKGQVNVADLDATRAL 96 (224)
T ss_pred EEEEEECC------CChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH
Confidence 35666666 999999998887542 2 556667776543
No 198
>PRK14282 chaperone protein DnaJ; Provisional
Probab=78.87 E-value=1.7 Score=42.44 Aligned_cols=38 Identities=26% Similarity=0.662 Sum_probs=29.5
Q ss_pred CcccCCCCceeE---------------eCCCCCCcceeeeccCCCCccccccCCccCcCCccc
Q 041824 237 GVCQGCADVRFF---------------PCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLVL 284 (289)
Q Consensus 237 ~~C~~Cgg~rfv---------------pC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLvr 284 (289)
..|..|.|.+.+ +|..|+|.-++. ..+|..|+..|.+.
T Consensus 170 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~ 222 (369)
T PRK14282 170 VTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP----------GEYCHECGGSGRIR 222 (369)
T ss_pred cCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC----------CCCCCCCCCceeEE
Confidence 479999988654 699999997663 23699999888764
No 199
>PRK14297 chaperone protein DnaJ; Provisional
Probab=78.86 E-value=1.8 Score=42.47 Aligned_cols=53 Identities=23% Similarity=0.624 Sum_probs=34.3
Q ss_pred CCcccCCCCcee------EeCCCCCCcceeeeccCCC-C-ccccccCCccCcCCcc---cCCCC
Q 041824 236 KGVCQGCADVRF------FPCFRCNGSCKLVINMQPR-G-KTAALRCPDCNENGLV---LCPLC 288 (289)
Q Consensus 236 ~~~C~~Cgg~rf------vpC~~C~GS~K~~~~~~~~-g-~~~~~rC~~CNENGLv---rCp~C 288 (289)
...|..|.|.+. ..|..|+|+-++....... | .....+|+.|+-.|.+ .|+.|
T Consensus 148 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 211 (380)
T PRK14297 148 NENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKC 211 (380)
T ss_pred eccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCC
Confidence 357888877664 6799999997665432110 1 1135688888888865 57777
No 200
>PRK14276 chaperone protein DnaJ; Provisional
Probab=78.82 E-value=1.7 Score=42.77 Aligned_cols=53 Identities=25% Similarity=0.658 Sum_probs=32.5
Q ss_pred CCcccCCCCcee------EeCCCCCCcceeeeccCCC-C-ccccccCCccCcCCcc---cCCCC
Q 041824 236 KGVCQGCADVRF------FPCFRCNGSCKLVINMQPR-G-KTAALRCPDCNENGLV---LCPLC 288 (289)
Q Consensus 236 ~~~C~~Cgg~rf------vpC~~C~GS~K~~~~~~~~-g-~~~~~rC~~CNENGLv---rCp~C 288 (289)
...|..|.|.+. ..|..|+|+-.+....... | ......|+.|+-.|-+ .|+.|
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 209 (380)
T PRK14276 146 EATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTC 209 (380)
T ss_pred cccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCC
Confidence 357888887664 6799999987665432100 1 0114578888777754 46666
No 201
>PRK14301 chaperone protein DnaJ; Provisional
Probab=78.62 E-value=1.7 Score=42.63 Aligned_cols=37 Identities=30% Similarity=0.887 Sum_probs=29.0
Q ss_pred CcccCCCCcee-----------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 237 GVCQGCADVRF-----------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 237 ~~C~~Cgg~rf-----------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..|..|.|.+. .+|..|+|.-++. ..+|+.|+-.|.+
T Consensus 162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 209 (373)
T PRK14301 162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI----------THPCPKCKGSGIV 209 (373)
T ss_pred cccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec----------CCCCCCCCCCcee
Confidence 57999999865 4799999997763 2369999988765
No 202
>PRK14279 chaperone protein DnaJ; Provisional
Probab=78.51 E-value=1.7 Score=42.93 Aligned_cols=64 Identities=27% Similarity=0.515 Sum_probs=36.0
Q ss_pred HHHHhccCCCc---ccCCcccCCCCcee------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc---cCCCC
Q 041824 223 FGELIEGIPIR---KLKGVCQGCADVRF------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV---LCPLC 288 (289)
Q Consensus 223 L~~lL~~~~~~---~~~~~C~~Cgg~rf------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv---rCp~C 288 (289)
|+++..+.... .....|..|.|.+. ..|..|+|+-.++..... ......|+.|+-.|.+ .|+.|
T Consensus 157 Lee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~--~~~~~~C~~C~G~G~~i~~~C~~C 232 (392)
T PRK14279 157 FVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGA--FGFSEPCTDCRGTGSIIEDPCEEC 232 (392)
T ss_pred HHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecc--eEEEEecCCCCceeEEeCCcCCCC
Confidence 55555443221 12356777777664 568888888765543211 1134677777776643 45555
No 203
>PRK14277 chaperone protein DnaJ; Provisional
Probab=78.44 E-value=1.9 Score=42.49 Aligned_cols=67 Identities=21% Similarity=0.418 Sum_probs=36.9
Q ss_pred cHHHHhccCCCc---ccCCcccCCCCce------eEeCCCCCCcceeeeccCC-CC-ccccccCCccCcCCcc---cCCC
Q 041824 222 WFGELIEGIPIR---KLKGVCQGCADVR------FFPCFRCNGSCKLVINMQP-RG-KTAALRCPDCNENGLV---LCPL 287 (289)
Q Consensus 222 ~L~~lL~~~~~~---~~~~~C~~Cgg~r------fvpC~~C~GS~K~~~~~~~-~g-~~~~~rC~~CNENGLv---rCp~ 287 (289)
.|++++.+.... .....|..|.|.+ ...|..|+|+-.++..... -| -.....|+.|+-.|.+ +|+.
T Consensus 138 tLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 217 (386)
T PRK14277 138 TFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNK 217 (386)
T ss_pred EHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCC
Confidence 355555543321 1134677776654 4679999988765443210 01 0123578888777755 4666
Q ss_pred C
Q 041824 288 C 288 (289)
Q Consensus 288 C 288 (289)
|
T Consensus 218 C 218 (386)
T PRK14277 218 C 218 (386)
T ss_pred C
Confidence 6
No 204
>PRK14284 chaperone protein DnaJ; Provisional
Probab=78.42 E-value=2.2 Score=42.14 Aligned_cols=38 Identities=24% Similarity=0.630 Sum_probs=29.0
Q ss_pred CCcccCCCCcee-----------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 236 KGVCQGCADVRF-----------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 236 ~~~C~~Cgg~rf-----------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
...|..|+|.+. .+|..|+|.-+++ ...|+.|+-.|.+
T Consensus 175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 223 (391)
T PRK14284 175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI----------TDPCSVCRGQGRI 223 (391)
T ss_pred CeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc----------CCcCCCCCCccee
Confidence 357999999876 5899999986552 2469999888765
No 205
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=78.32 E-value=1.6 Score=29.28 Aligned_cols=32 Identities=22% Similarity=0.642 Sum_probs=22.4
Q ss_pred eEeCCCCCCcceeeeccCCCCccccccCCccCc
Q 041824 247 FFPCFRCNGSCKLVINMQPRGKTAALRCPDCNE 279 (289)
Q Consensus 247 fvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNE 279 (289)
.+-|++|+...++-.+.-. .....+||+.|.+
T Consensus 2 ~i~CP~C~~~f~v~~~~l~-~~~~~vrC~~C~~ 33 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKLP-AGGRKVRCPKCGH 33 (37)
T ss_pred EEECCCCCceEEcCHHHcc-cCCcEEECCCCCc
Confidence 3679999999988665311 1123789999975
No 206
>PRK14293 chaperone protein DnaJ; Provisional
Probab=78.25 E-value=1.8 Score=42.35 Aligned_cols=67 Identities=27% Similarity=0.482 Sum_probs=40.1
Q ss_pred cHHHHhccCCCc---ccCCcccCCCCce------eEeCCCCCCcceeeeccCC--CCccccccCCccCcCCcc---cCCC
Q 041824 222 WFGELIEGIPIR---KLKGVCQGCADVR------FFPCFRCNGSCKLVINMQP--RGKTAALRCPDCNENGLV---LCPL 287 (289)
Q Consensus 222 ~L~~lL~~~~~~---~~~~~C~~Cgg~r------fvpC~~C~GS~K~~~~~~~--~g~~~~~rC~~CNENGLv---rCp~ 287 (289)
.|++++.+.... .....|..|.|.+ ...|..|+|+-.+...... +......+|+.|+-.|-+ +|+.
T Consensus 126 sLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 205 (374)
T PRK14293 126 DFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDA 205 (374)
T ss_pred eHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCC
Confidence 355555553321 1235677777754 3679999999766543210 111124689999888876 6777
Q ss_pred C
Q 041824 288 C 288 (289)
Q Consensus 288 C 288 (289)
|
T Consensus 206 C 206 (374)
T PRK14293 206 C 206 (374)
T ss_pred C
Confidence 7
No 207
>PRK14280 chaperone protein DnaJ; Provisional
Probab=78.22 E-value=2.2 Score=41.90 Aligned_cols=37 Identities=30% Similarity=0.792 Sum_probs=28.9
Q ss_pred CcccCCCCceeE---------------eCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 237 GVCQGCADVRFF---------------PCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 237 ~~C~~Cgg~rfv---------------pC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..|..|+|.+.+ +|..|+|.-+++ ..+|+.|+-.|.+
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 212 (376)
T PRK14280 161 ETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI----------KEKCPTCHGKGKV 212 (376)
T ss_pred ccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee----------cCCCCCCCCceEE
Confidence 579999988653 799999997653 2469999988875
No 208
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=78.19 E-value=7.9 Score=32.39 Aligned_cols=46 Identities=7% Similarity=0.000 Sum_probs=27.2
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHH-HH------Hh--CCCcEEEEEcCCChhHHHHHHH
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKS-VI------EN--FGVAVSERDVSMDRGFKEELRE 168 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~-iL------~~--~gV~y~ErDVs~d~~~reEL~~ 168 (289)
+.|+||..+ .+|++|+.... .+ +. .++.+..+|++..++..+.+.+
T Consensus 16 KpVll~f~a-----~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~ 70 (124)
T cd02955 16 KPIFLSIGY-----STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMN 70 (124)
T ss_pred CeEEEEEcc-----CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHH
Confidence 346665443 39999998854 22 22 2455567788766665554444
No 209
>PRK14279 chaperone protein DnaJ; Provisional
Probab=78.11 E-value=1.6 Score=43.07 Aligned_cols=39 Identities=26% Similarity=0.775 Sum_probs=29.8
Q ss_pred CCcccCCCCceeE-----------eCCCCCCcceeeeccCCCCccccccCCccCcCCccc
Q 041824 236 KGVCQGCADVRFF-----------PCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLVL 284 (289)
Q Consensus 236 ~~~C~~Cgg~rfv-----------pC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLvr 284 (289)
...|..|.|.+.+ +|..|+|.-++. ..+|..|+-.|.++
T Consensus 190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i----------~~~C~~C~G~g~v~ 239 (392)
T PRK14279 190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII----------EDPCEECKGTGVTT 239 (392)
T ss_pred CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe----------CCcCCCCCCCeEEE
Confidence 3579999998764 799999997763 23699998887763
No 210
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=77.96 E-value=12 Score=31.72 Aligned_cols=81 Identities=21% Similarity=0.427 Sum_probs=46.8
Q ss_pred CCCCCHHHH-----------HHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCC
Q 041824 130 IRKTYEACK-----------AAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVL 198 (289)
Q Consensus 130 vR~tC~~C~-----------~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~L 198 (289)
..+||+.|. .++.+|+.+||.+...-+.++.+ ++.... ...
T Consensus 11 ~g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~---~~~~~~----------------------~~S--- 62 (120)
T PF10865_consen 11 DGKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE---EFARQP----------------------LES--- 62 (120)
T ss_pred CCCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH---HHhhcc----------------------cCC---
Confidence 366888886 45667888898855444443321 222111 123
Q ss_pred CEEEECCeEEechHHHHHHHHhCcHHHHhccCCCcccCCcccCCCCceeEeCCCCCC-cceeeec
Q 041824 199 PRVFVKGRYVGGAEEVLRIVEEGWFGELIEGIPIRKLKGVCQGCADVRFFPCFRCNG-SCKLVIN 262 (289)
Q Consensus 199 PqIFI~G~~IGG~del~~L~E~G~L~~lL~~~~~~~~~~~C~~Cgg~rfvpC~~C~G-S~K~~~~ 262 (289)
|.|.|||+. |+.+| ++... ...|..||. ..|.+ .||++.-
T Consensus 63 ~~I~inG~p---------------iE~~l-~~~v~--~s~C~~c~~------~~g~~~~CRt~~~ 103 (120)
T PF10865_consen 63 PTIRINGRP---------------IEDLL-GAEVG--ESPCESCGC------SCGGDVDCRTLEY 103 (120)
T ss_pred CeeeECCEe---------------hhHhh-CCccc--cCccccccc------ccCCCccceeEEE
Confidence 999999984 56666 44432 456777763 34433 3677654
No 211
>PRK14286 chaperone protein DnaJ; Provisional
Probab=77.94 E-value=2 Score=42.22 Aligned_cols=38 Identities=24% Similarity=0.650 Sum_probs=29.5
Q ss_pred CcccCCCCceeE-----------eCCCCCCcceeeeccCCCCccccccCCccCcCCccc
Q 041824 237 GVCQGCADVRFF-----------PCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLVL 284 (289)
Q Consensus 237 ~~C~~Cgg~rfv-----------pC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLvr 284 (289)
..|..|.|.+.+ +|..|+|.-++. ..+|..|+-.|.++
T Consensus 168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~~~ 216 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI----------SNPCKTCGGQGLQE 216 (372)
T ss_pred ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe----------cccCCCCCCCcEEe
Confidence 579999998754 799999987663 23699998888764
No 212
>PRK10542 glutathionine S-transferase; Provisional
Probab=77.92 E-value=8.1 Score=33.08 Aligned_cols=61 Identities=8% Similarity=0.203 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCChh---HHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEE-CCeEEech
Q 041824 136 ACKAAKSVIENFGVAVSERDVSMDRG---FKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFV-KGRYVGGA 211 (289)
Q Consensus 136 ~C~~ak~iL~~~gV~y~ErDVs~d~~---~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI-~G~~IGG~ 211 (289)
.+.+++-+|+.+||+|+.+.|+.... ..+++.++.-. ..+ |.+.+ ||..|-..
T Consensus 10 ~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~--------------------g~v---PvL~~~~g~~l~eS 66 (201)
T PRK10542 10 CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK--------------------GQV---PALLLDDGTLLTEG 66 (201)
T ss_pred HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC--------------------CCC---CeEEeCCCcEeecH
Confidence 47788999999999999887765321 12345544221 134 99976 66777777
Q ss_pred HHHHHHHH
Q 041824 212 EEVLRIVE 219 (289)
Q Consensus 212 del~~L~E 219 (289)
..+.+..+
T Consensus 67 ~aI~~YL~ 74 (201)
T PRK10542 67 VAIMQYLA 74 (201)
T ss_pred HHHHHHHH
Confidence 66666543
No 213
>PRK10767 chaperone protein DnaJ; Provisional
Probab=77.83 E-value=2 Score=41.86 Aligned_cols=38 Identities=26% Similarity=0.649 Sum_probs=29.2
Q ss_pred CcccCCCCceeE-----------eCCCCCCcceeeeccCCCCccccccCCccCcCCccc
Q 041824 237 GVCQGCADVRFF-----------PCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLVL 284 (289)
Q Consensus 237 ~~C~~Cgg~rfv-----------pC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLvr 284 (289)
..|..|.|.+.+ +|..|+|.-+.. ..+|..|+-.|.++
T Consensus 160 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~ 208 (371)
T PRK10767 160 KTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII----------KDPCKKCHGQGRVE 208 (371)
T ss_pred ccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC----------CCCCCCCCCCceEe
Confidence 479999998765 599999987653 24699999888653
No 214
>PRK14296 chaperone protein DnaJ; Provisional
Probab=77.81 E-value=2.1 Score=42.11 Aligned_cols=37 Identities=27% Similarity=0.759 Sum_probs=27.7
Q ss_pred CcccCCCCceeE---------------eCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 237 GVCQGCADVRFF---------------PCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 237 ~~C~~Cgg~rfv---------------pC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..|..|+|.+.+ +|..|+|.-++. ..+|+.|+-.|.+
T Consensus 167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 218 (372)
T PRK14296 167 HICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII----------KNKCKNCKGKGKY 218 (372)
T ss_pred ccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee----------cccccCCCCceEE
Confidence 468889887653 799999987663 2369999887765
No 215
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.80 E-value=1.8 Score=44.15 Aligned_cols=45 Identities=29% Similarity=0.679 Sum_probs=34.9
Q ss_pred CcccCCCCceeEeCCCCCCcceeeeccCCCCccccccCCccCcCC--cccCCCCC
Q 041824 237 GVCQGCADVRFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENG--LVLCPLCS 289 (289)
Q Consensus 237 ~~C~~Cgg~rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENG--LvrCp~C~ 289 (289)
-.|..||-. +.|+.|+++...+... + .++|.+|+-.- -.+||.|.
T Consensus 214 ~~C~~Cg~~--~~C~~C~~~l~~h~~~---~---~l~Ch~Cg~~~~~~~~Cp~C~ 260 (505)
T TIGR00595 214 LLCRSCGYI--LCCPNCDVSLTYHKKE---G---KLRCHYCGYQEPIPKTCPQCG 260 (505)
T ss_pred eEhhhCcCc--cCCCCCCCceEEecCC---C---eEEcCCCcCcCCCCCCCCCCC
Confidence 589999974 7899999997766443 2 68999998664 45799993
No 216
>PRK14297 chaperone protein DnaJ; Provisional
Probab=77.45 E-value=2 Score=42.10 Aligned_cols=37 Identities=30% Similarity=0.749 Sum_probs=28.9
Q ss_pred CcccCCCCceeE---------------eCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 237 GVCQGCADVRFF---------------PCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 237 ~~C~~Cgg~rfv---------------pC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..|..|.|.+.+ +|..|+|.-++. ..+|..|+-.|.+
T Consensus 166 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 217 (380)
T PRK14297 166 KTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI----------EDPCNKCHGKGKV 217 (380)
T ss_pred ccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc----------CCCCCCCCCCeEE
Confidence 579999998754 799999997663 2369999988865
No 217
>PRK14278 chaperone protein DnaJ; Provisional
Probab=77.41 E-value=2 Score=42.27 Aligned_cols=37 Identities=27% Similarity=0.680 Sum_probs=28.9
Q ss_pred CcccCCCCcee---------------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 237 GVCQGCADVRF---------------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 237 ~~C~~Cgg~rf---------------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..|..|.|.+. .+|..|+|.-+++ ..+|+.|+-.|.+
T Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 208 (378)
T PRK14278 157 VTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI----------PDPCHECAGDGRV 208 (378)
T ss_pred eecCCccCceEEEEEEeccceeEEEEEECCCCCccceee----------CCCCCCCCCceeE
Confidence 47999998764 4799999997763 2369999988876
No 218
>PRK14288 chaperone protein DnaJ; Provisional
Probab=77.30 E-value=2.1 Score=41.93 Aligned_cols=37 Identities=22% Similarity=0.649 Sum_probs=28.8
Q ss_pred CcccCCCCceeE-----------eCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 237 GVCQGCADVRFF-----------PCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 237 ~~C~~Cgg~rfv-----------pC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..|..|+|.+.+ +|..|+|.-++. ...|+.|+-.|.+
T Consensus 157 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 204 (369)
T PRK14288 157 ETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII----------KTPCQACKGKTYI 204 (369)
T ss_pred cCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc----------cccCccCCCcceE
Confidence 579999998864 699999997763 2369999888765
No 219
>PRK14300 chaperone protein DnaJ; Provisional
Probab=76.58 E-value=2.2 Score=41.88 Aligned_cols=37 Identities=24% Similarity=0.739 Sum_probs=27.8
Q ss_pred CcccCCCCceeE-----------eCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 237 GVCQGCADVRFF-----------PCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 237 ~~C~~Cgg~rfv-----------pC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..|..|.|.+++ +|..|+|.-++. ..+|+.|+-.|.+
T Consensus 163 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 210 (372)
T PRK14300 163 TTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII----------KNPCKKCHGMGRY 210 (372)
T ss_pred ccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe----------CCCCCCCCCceEE
Confidence 578899988765 688888886553 2468888887765
No 220
>PRK14295 chaperone protein DnaJ; Provisional
Probab=76.25 E-value=2.4 Score=41.91 Aligned_cols=37 Identities=27% Similarity=0.616 Sum_probs=28.8
Q ss_pred CcccCCCCcee-----------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 237 GVCQGCADVRF-----------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 237 ~~C~~Cgg~rf-----------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..|..|+|.+. .+|..|+|.-++. ..+|..|+..|.+
T Consensus 184 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~~ 231 (389)
T PRK14295 184 RVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA----------DDPCLVCKGSGRA 231 (389)
T ss_pred cCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe----------ccCCCCCCCCceE
Confidence 57999998765 5899999997763 2369999888765
No 221
>PRK14298 chaperone protein DnaJ; Provisional
Probab=76.17 E-value=2.2 Score=41.93 Aligned_cols=37 Identities=27% Similarity=0.709 Sum_probs=28.5
Q ss_pred CcccCCCCcee---------------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 237 GVCQGCADVRF---------------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 237 ~~C~~Cgg~rf---------------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..|..|.|.+. .+|..|+|.-+.. ..+|+.|+-.|.+
T Consensus 159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 210 (377)
T PRK14298 159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI----------ESPCPVCSGTGKV 210 (377)
T ss_pred CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc----------CCCCCCCCCccEE
Confidence 57999998875 3799999986552 3469999988865
No 222
>PRK14294 chaperone protein DnaJ; Provisional
Probab=75.95 E-value=2.4 Score=41.46 Aligned_cols=37 Identities=30% Similarity=0.728 Sum_probs=28.7
Q ss_pred CcccCCCCceeE-----------eCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 237 GVCQGCADVRFF-----------PCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 237 ~~C~~Cgg~rfv-----------pC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..|..|.|.+.+ +|..|+|.-+.. ...|..|+-.|.+
T Consensus 162 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 209 (366)
T PRK14294 162 TTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI----------VSPCKTCHGQGRV 209 (366)
T ss_pred ccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec----------CcCCCCCCCceEe
Confidence 479999988754 799999997763 2469999988765
No 223
>PRK14281 chaperone protein DnaJ; Provisional
Probab=75.47 E-value=2.5 Score=41.78 Aligned_cols=67 Identities=27% Similarity=0.592 Sum_probs=37.9
Q ss_pred cHHHHhccCCCc---ccCCcccCCCCcee-----EeCCCCCCcceeeeccCC-CCc-cccccCCccCcCCcc---cCCCC
Q 041824 222 WFGELIEGIPIR---KLKGVCQGCADVRF-----FPCFRCNGSCKLVINMQP-RGK-TAALRCPDCNENGLV---LCPLC 288 (289)
Q Consensus 222 ~L~~lL~~~~~~---~~~~~C~~Cgg~rf-----vpC~~C~GS~K~~~~~~~-~g~-~~~~rC~~CNENGLv---rCp~C 288 (289)
.|+++..+.... .....|..|.|.+. ..|..|+|+-.+...... .|. .....|+.|+-.|.+ +|+.|
T Consensus 146 tLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 225 (397)
T PRK14281 146 TLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPAC 225 (397)
T ss_pred EHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCC
Confidence 355666554321 11346777766553 569999998765443210 011 124578888888854 57777
No 224
>PRK14281 chaperone protein DnaJ; Provisional
Probab=75.43 E-value=2.5 Score=41.79 Aligned_cols=38 Identities=29% Similarity=0.701 Sum_probs=29.3
Q ss_pred CcccCCCCcee---------------EeCCCCCCcceeeeccCCCCccccccCCccCcCCccc
Q 041824 237 GVCQGCADVRF---------------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLVL 284 (289)
Q Consensus 237 ~~C~~Cgg~rf---------------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLvr 284 (289)
..|..|+|.+. .+|..|+|.-++. ..+|..|+-.|.+.
T Consensus 180 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~ 232 (397)
T PRK14281 180 ETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV----------KDRCPACYGEGIKQ 232 (397)
T ss_pred ccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee----------CCCCCCCCCCccEe
Confidence 57999998764 3699999997763 23699999888763
No 225
>PRK14283 chaperone protein DnaJ; Provisional
Probab=75.37 E-value=2.8 Score=41.14 Aligned_cols=68 Identities=22% Similarity=0.502 Sum_probs=40.8
Q ss_pred cHHHHhccCCCc---ccCCcccCCCCce------eEeCCCCCCcceeeeccCC--CCccccccCCccCcCCcc---cCCC
Q 041824 222 WFGELIEGIPIR---KLKGVCQGCADVR------FFPCFRCNGSCKLVINMQP--RGKTAALRCPDCNENGLV---LCPL 287 (289)
Q Consensus 222 ~L~~lL~~~~~~---~~~~~C~~Cgg~r------fvpC~~C~GS~K~~~~~~~--~g~~~~~rC~~CNENGLv---rCp~ 287 (289)
.|++++.+.... .....|..|.|.+ ...|..|+|+-.+...... +.......|+.|+-.|.+ .|..
T Consensus 129 sLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 208 (378)
T PRK14283 129 TLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSN 208 (378)
T ss_pred eHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCC
Confidence 355666554321 1134677777644 4679999999776543211 111124688888888866 6877
Q ss_pred CC
Q 041824 288 CS 289 (289)
Q Consensus 288 C~ 289 (289)
|.
T Consensus 209 C~ 210 (378)
T PRK14283 209 CH 210 (378)
T ss_pred CC
Confidence 73
No 226
>PRK14276 chaperone protein DnaJ; Provisional
Probab=75.01 E-value=2.9 Score=41.10 Aligned_cols=37 Identities=24% Similarity=0.585 Sum_probs=28.1
Q ss_pred CcccCCCCcee---------------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 237 GVCQGCADVRF---------------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 237 ~~C~~Cgg~rf---------------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..|..|+|.+. .+|..|+|.-++. ..+|..|+-.|.+
T Consensus 164 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~~ 215 (380)
T PRK14276 164 VTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI----------KEPCQTCHGTGHE 215 (380)
T ss_pred ccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc----------cCCCCCCCCceEE
Confidence 47999998754 3799999986663 2469999888875
No 227
>PRK14293 chaperone protein DnaJ; Provisional
Probab=74.67 E-value=1.9 Score=42.20 Aligned_cols=32 Identities=28% Similarity=0.491 Sum_probs=22.0
Q ss_pred ceeEeCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 245 VRFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 245 ~rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
.|.++|..|+|+..... ....+|+.|+-+|.+
T Consensus 141 ~r~~~C~~C~G~G~~~~-------~~~~~C~~C~G~G~~ 172 (374)
T PRK14293 141 PHLETCETCRGSGAKPG-------TGPTTCSTCGGAGQV 172 (374)
T ss_pred eccccCCCCCCcCCCCC-------CCCeeCCCCCCcceE
Confidence 46688999988854311 114689999999864
No 228
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=74.44 E-value=10 Score=29.35 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=22.9
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHh----C---C--CcEEEEEcCCCh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIEN----F---G--VAVSERDVSMDR 160 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~----~---g--V~y~ErDVs~d~ 160 (289)
-+|.|.++ +|+.|++....|+. + + +.+..+|+...+
T Consensus 18 vlv~f~a~------wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~ 62 (104)
T cd03000 18 WLVDFYAP------WCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS 62 (104)
T ss_pred EEEEEECC------CCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH
Confidence 35556666 99999977766643 2 3 445566766543
No 229
>PRK14277 chaperone protein DnaJ; Provisional
Probab=74.09 E-value=2.9 Score=41.22 Aligned_cols=37 Identities=27% Similarity=0.658 Sum_probs=29.0
Q ss_pred CcccCCCCcee---------------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 237 GVCQGCADVRF---------------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 237 ~~C~~Cgg~rf---------------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..|..|.|.+. .+|..|+|.-++. ..+|..|+-.|.+
T Consensus 173 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 224 (386)
T PRK14277 173 VTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII----------TDPCNKCGGTGRI 224 (386)
T ss_pred ccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec----------cCCCCCCCCCcEE
Confidence 57999998865 3799999997763 2369999988876
No 230
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=73.77 E-value=3.1 Score=40.23 Aligned_cols=39 Identities=26% Similarity=0.630 Sum_probs=29.6
Q ss_pred CCcccCCCCcee---------------EeCCCCCCcceeeeccCCCCccccccCCccCcCCccc
Q 041824 236 KGVCQGCADVRF---------------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLVL 284 (289)
Q Consensus 236 ~~~C~~Cgg~rf---------------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLvr 284 (289)
...|..|+|.+. .+|..|+|+-+.. ...|..|+-.|.+.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~ 213 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII----------KEPCSTCKGKGRVK 213 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec----------CCCCCCCCCCcEec
Confidence 357999999764 4799999997763 23699999888764
No 231
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=73.77 E-value=2.5 Score=38.27 Aligned_cols=27 Identities=19% Similarity=0.546 Sum_probs=22.5
Q ss_pred CCcccCCCCceeEe-----CCCCCCcceeeec
Q 041824 236 KGVCQGCADVRFFP-----CFRCNGSCKLVIN 262 (289)
Q Consensus 236 ~~~C~~Cgg~rfvp-----C~~C~GS~K~~~~ 262 (289)
...|..|+|.+++. |..|+|+-++...
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT 130 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence 46899999999975 9999999777543
No 232
>PRK14290 chaperone protein DnaJ; Provisional
Probab=73.30 E-value=3 Score=40.73 Aligned_cols=37 Identities=30% Similarity=0.732 Sum_probs=28.4
Q ss_pred CcccCCCCcee---------------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 237 GVCQGCADVRF---------------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 237 ~~C~~Cgg~rf---------------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..|..|+|.+. .+|..|+|.-++. ..+|+.|+-.|.+
T Consensus 166 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 217 (365)
T PRK14290 166 ITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP----------EEKCPRCNGTGTV 217 (365)
T ss_pred ccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc----------cCCCCCCCCceeE
Confidence 57999998774 4899999987652 3479999888775
No 233
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=72.84 E-value=12 Score=28.20 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=24.7
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHHHHHhC--------CCcEEEEEcCC
Q 041824 117 ENKVVIYTTTLRGIRKTYEACKAAKSVIENF--------GVAVSERDVSM 158 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~--------gV~y~ErDVs~ 158 (289)
..-+|.|.++ +|+.|+.....|+.. .+.+-.+|.+.
T Consensus 19 ~~~~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (104)
T cd02995 19 KDVLVEFYAP------WCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA 62 (104)
T ss_pred CcEEEEEECC------CCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc
Confidence 3346667778 999999887777542 25566677764
No 234
>PRK14289 chaperone protein DnaJ; Provisional
Probab=72.79 E-value=4.1 Score=40.06 Aligned_cols=38 Identities=29% Similarity=0.782 Sum_probs=28.9
Q ss_pred CCcccCCCCceeE---------------eCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 236 KGVCQGCADVRFF---------------PCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 236 ~~~C~~Cgg~rfv---------------pC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
...|..|.|.+.+ +|..|+|.-++. ..+|..|+-.|.+
T Consensus 171 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 223 (386)
T PRK14289 171 SETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII----------KKKCKKCGGEGIV 223 (386)
T ss_pred CCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc----------CcCCCCCCCCcEE
Confidence 3579999887654 799999985442 3479999988875
No 235
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=72.69 E-value=6.5 Score=32.21 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=27.2
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhC------CCcEEEEEcCCCh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENF------GVAVSERDVSMDR 160 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~------gV~y~ErDVs~d~ 160 (289)
-+|.|..+ +|++|+.++..|+.. .|.+-.+|++.+.
T Consensus 32 vlV~FyA~------WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~ 73 (113)
T cd03006 32 SLVMYYAP------WDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ 73 (113)
T ss_pred EEEEEECC------CCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh
Confidence 47778888 999999998888754 2566778887554
No 236
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=72.28 E-value=24 Score=33.03 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=58.9
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCC
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPV 197 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~ 197 (289)
++=|.|-=.-.+...+-++-.+++..|+.+|+.+.+++++..+ .+++...+..
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~--~~~Ie~~l~~------------------------- 84 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPP--LAAIENKLMK------------------------- 84 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCC--HHHHHHhhhh-------------------------
Confidence 3445565555667777789999999999999999999999764 3566665543
Q ss_pred CCEEEECCeEEech---HHHHHHHHhCcHHHHhccCCC
Q 041824 198 LPRVFVKGRYVGGA---EEVLRIVEEGWFGELIEGIPI 232 (289)
Q Consensus 198 LPqIFI~G~~IGG~---del~~L~E~G~L~~lL~~~~~ 232 (289)
.+..||||- .=|+.|.|.|-++-+.+.+.+
T Consensus 85 -----~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~ 117 (224)
T COG3340 85 -----ADIIYVGGGNTFNLLQELKETGLDDIIRERVKA 117 (224)
T ss_pred -----ccEEEECCchHHHHHHHHHHhCcHHHHHHHHHc
Confidence 234577775 446677888877766665543
No 237
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=72.27 E-value=3.4 Score=41.48 Aligned_cols=41 Identities=24% Similarity=0.579 Sum_probs=31.5
Q ss_pred CCcccCCCCcee---------------EeCCCCCCcceeeeccCCCCccccccCCccCcCCccc
Q 041824 236 KGVCQGCADVRF---------------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLVL 284 (289)
Q Consensus 236 ~~~C~~Cgg~rf---------------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLvr 284 (289)
...|..|+|.+. .+|..|+|.-+++... .+|..|+-.|.++
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~--------~~C~~C~G~g~v~ 221 (421)
T PTZ00037 166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES--------KKCKNCSGKGVKK 221 (421)
T ss_pred CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc--------ccCCcCCCcceee
Confidence 357999998773 3899999998776432 4799999988764
No 238
>PRK05580 primosome assembly protein PriA; Validated
Probab=71.97 E-value=3 Score=44.06 Aligned_cols=45 Identities=31% Similarity=0.618 Sum_probs=33.9
Q ss_pred CCcccCCCCceeEeCCCCCCcceeeeccCCCCccccccCCccCcCC--cccCCCC
Q 041824 236 KGVCQGCADVRFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENG--LVLCPLC 288 (289)
Q Consensus 236 ~~~C~~Cgg~rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENG--LvrCp~C 288 (289)
...|..||-. +.|+.|+++...+... ..++|..|+-.- --+||.|
T Consensus 381 ~~~C~~Cg~~--~~C~~C~~~l~~h~~~------~~l~Ch~Cg~~~~~~~~Cp~C 427 (679)
T PRK05580 381 FLLCRDCGWV--AECPHCDASLTLHRFQ------RRLRCHHCGYQEPIPKACPEC 427 (679)
T ss_pred ceEhhhCcCc--cCCCCCCCceeEECCC------CeEECCCCcCCCCCCCCCCCC
Confidence 3589999974 6899999986554432 268999998764 3579998
No 239
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=70.98 E-value=19 Score=29.40 Aligned_cols=50 Identities=14% Similarity=0.243 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCChh--HHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeEEe-chHHHHHHH
Q 041824 148 GVAVSERDVSMDRG--FKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRYVG-GAEEVLRIV 218 (289)
Q Consensus 148 gV~y~ErDVs~d~~--~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~IG-G~del~~L~ 218 (289)
.+.|.++||...++ ..+++.++.-.. . .-.|.|.|+|++|| |.-.|+...
T Consensus 37 ~f~~~YiDi~~p~~~~~~~~~a~~I~ed------------------e---~fYPlV~i~~eiV~EGnp~LK~I~ 89 (93)
T PF07315_consen 37 PFEFTYIDIENPPENDHDQQFAERILED------------------E---LFYPLVVINDEIVAEGNPQLKDIY 89 (93)
T ss_dssp -EEEEEEETTT----HHHHHHHHHHHTT------------------S---S-SSEEEETTEEEEESS--HHHHH
T ss_pred ceEEEEEecCCCCccHHHHHHHHHHHhc------------------c---cccceEEECCEEEecCCccHHHHH
Confidence 45678999987543 344454444322 1 12499999999998 665555443
No 240
>PRK14291 chaperone protein DnaJ; Provisional
Probab=69.98 E-value=3 Score=41.03 Aligned_cols=38 Identities=34% Similarity=0.765 Sum_probs=28.8
Q ss_pred CCcccCCCCceeE-----------eCCCCCCcceeeeccCCCCccccccCCccCcCCccc
Q 041824 236 KGVCQGCADVRFF-----------PCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLVL 284 (289)
Q Consensus 236 ~~~C~~Cgg~rfv-----------pC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLvr 284 (289)
...|..|.|.+.+ +|..|+|.-.+ ...|..|+-.|.+.
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-----------~~~C~~C~G~g~v~ 221 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL-----------REPCSKCNGRGLVI 221 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceEE-----------ccCCCCCCCCceEE
Confidence 3579999998764 79999998732 23699999888763
No 241
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=69.75 E-value=13 Score=33.35 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=24.6
Q ss_pred cEEE-EEecCCCCCCCCHHHHHHHHHHHhC-----CCcEEEEEcC
Q 041824 119 KVVI-YTTTLRGIRKTYEACKAAKSVIENF-----GVAVSERDVS 157 (289)
Q Consensus 119 kVVV-YttSLrgvR~tC~~C~~ak~iL~~~-----gV~y~ErDVs 157 (289)
.||| |+.+ +|+.|+.+..+|+.+ .|+|..+|++
T Consensus 104 ~VVV~Fya~------wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad 142 (192)
T cd02988 104 WVVVHLYKD------GIPLCRLLNQHLSELARKFPDTKFVKIIST 142 (192)
T ss_pred EEEEEEECC------CCchHHHHHHHHHHHHHHCCCCEEEEEEhH
Confidence 4555 5556 999999998888653 4778888885
No 242
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=69.29 E-value=3 Score=35.07 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=20.6
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHH----HHHhC-CCcEEEEEcC
Q 041824 116 GENKVVIYTTTLRGIRKTYEACKAAKS----VIENF-GVAVSERDVS 157 (289)
Q Consensus 116 ~~~kVVVYttSLrgvR~tC~~C~~ak~----iL~~~-gV~y~ErDVs 157 (289)
..-.|+|++-+ +|++|.+..- +++.. +|++..+..+
T Consensus 41 ~~~~ilvi~e~------WCgD~~~~vP~l~kiae~~p~i~~~~i~rd 81 (129)
T PF14595_consen 41 KPYNILVITET------WCGDCARNVPVLAKIAEANPNIEVRIILRD 81 (129)
T ss_dssp S-EEEEEE--T------T-HHHHHHHHHHHHHHHH-TTEEEEEE-HH
T ss_pred CCcEEEEEECC------CchhHHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 34479999999 9999997654 44555 5666555443
No 243
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=69.14 E-value=3.8 Score=29.51 Aligned_cols=32 Identities=28% Similarity=0.602 Sum_probs=21.1
Q ss_pred eEeCCCCCCcceeeeccCCCCc---cccccCCccCc
Q 041824 247 FFPCFRCNGSCKLVINMQPRGK---TAALRCPDCNE 279 (289)
Q Consensus 247 fvpC~~C~GS~K~~~~~~~~g~---~~~~rC~~CNE 279 (289)
..||+.| |+..+......... ..++.|..|.-
T Consensus 3 LkPCPFC-G~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 3 LKPCPFC-GSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CcCCCCC-CCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 4689999 88777665432111 15788999875
No 244
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=68.92 E-value=3.5 Score=27.60 Aligned_cols=31 Identities=19% Similarity=0.497 Sum_probs=22.1
Q ss_pred EeCCCCCCcceeeeccCCCCccccccCCccCc
Q 041824 248 FPCFRCNGSCKLVINMQPRGKTAALRCPDCNE 279 (289)
Q Consensus 248 vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNE 279 (289)
+.|+.|+....+-.+.- .+....+||+.|.+
T Consensus 3 i~Cp~C~~~y~i~d~~i-p~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKI-PPKGRKVRCSKCGH 33 (36)
T ss_pred EECCCCCCEEeCCHHHC-CCCCcEEECCCCCC
Confidence 67999998887755432 23345789999975
No 245
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=67.98 E-value=14 Score=29.80 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=16.5
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIEN 146 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~ 146 (289)
-||.|+++ +|+.|+.....++.
T Consensus 22 vvV~f~a~------wC~~C~~~~~~~~~ 43 (114)
T cd02992 22 WLVEFYAS------WCGHCRAFAPTWKK 43 (114)
T ss_pred EEEEEECC------CCHHHHHHhHHHHH
Confidence 35566677 99999988777654
No 246
>PRK14287 chaperone protein DnaJ; Provisional
Probab=67.37 E-value=4.4 Score=39.76 Aligned_cols=37 Identities=27% Similarity=0.756 Sum_probs=28.8
Q ss_pred CcccCCCCcee---------------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 237 GVCQGCADVRF---------------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 237 ~~C~~Cgg~rf---------------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..|..|.|.+. .+|..|+|+-++. ...|..|+-.|.+
T Consensus 156 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 207 (371)
T PRK14287 156 ETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII----------KQKCATCGGKGKV 207 (371)
T ss_pred cccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc----------cccCCCCCCeeEE
Confidence 57999999875 3799999997763 2469999887765
No 247
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=66.82 E-value=4.4 Score=32.56 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=35.9
Q ss_pred HHHHHHHhCCCcEEEEEcCC-ChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeEEechHHHHHH
Q 041824 139 AAKSVIENFGVAVSERDVSM-DRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRYVGGAEEVLRI 217 (289)
Q Consensus 139 ~ak~iL~~~gV~y~ErDVs~-d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~IGG~del~~L 217 (289)
.+..++...|++.++++-.+ +....+.+++-...- .. ..+...|.++|+|+++-|+.+...|
T Consensus 87 ~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~---~gi~gtPt~~v~g~~~~G~~~~~~l 149 (154)
T cd03023 87 SLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLA--------------RA---LGITGTPAFIIGDTVIPGAVPADTL 149 (154)
T ss_pred HHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHH--------------HH---cCCCcCCeEEECCEEecCCCCHHHH
Confidence 56778888888765432222 233444444332110 00 1123449999999999998776554
Q ss_pred H
Q 041824 218 V 218 (289)
Q Consensus 218 ~ 218 (289)
.
T Consensus 150 ~ 150 (154)
T cd03023 150 K 150 (154)
T ss_pred H
Confidence 3
No 248
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=65.48 E-value=22 Score=33.49 Aligned_cols=69 Identities=25% Similarity=0.267 Sum_probs=44.9
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCc--EEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCC
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKSVIENFGVA--VSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLP 195 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~--y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv 195 (289)
-.|-||+-- ||.-|...-+.|+++|.- +..+|-..-+. ..++ . .+
T Consensus 11 ~~VkI~~Hk------tC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~-----~--------------------~V 57 (265)
T COG5494 11 MEVKIFTHK------TCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFE-----K--------------------GV 57 (265)
T ss_pred eEEEEEEec------chHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhh-----c--------------------ce
Confidence 358899888 999999999999998764 44455443321 1111 1 12
Q ss_pred CCCCEEEECCeEEec----hHHHHHHHH
Q 041824 196 PVLPRVFVKGRYVGG----AEEVLRIVE 219 (289)
Q Consensus 196 ~~LPqIFI~G~~IGG----~del~~L~E 219 (289)
.++|-||+||+.+-+ .+++..+.+
T Consensus 58 ~SvP~Vf~DGel~~~dpVdp~~ies~~~ 85 (265)
T COG5494 58 ISVPSVFIDGELVYADPVDPEEIESILS 85 (265)
T ss_pred eecceEEEcCeEEEcCCCCHHHHHHHHc
Confidence 345999999997643 355555443
No 249
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.38 E-value=25 Score=29.16 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=44.6
Q ss_pred CCCcEEEEEecCCCCCCCCHHHH------HHHHHHHh--------CCCcEEEEEcCCCh--hHHHHHHHHHcccccccCC
Q 041824 116 GENKVVIYTTTLRGIRKTYEACK------AAKSVIEN--------FGVAVSERDVSMDR--GFKEELRELMMRRRRRSSS 179 (289)
Q Consensus 116 ~~~kVVVYttSLrgvR~tC~~C~------~ak~iL~~--------~gV~y~ErDVs~d~--~~reEL~~llg~~~~~~~~ 179 (289)
.+.+++||... ..|.-|- ..-.+|+. +...|+.+||..++ +...++.++.-..
T Consensus 3 ~~~~l~VyGae-----~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~d------ 71 (106)
T COG4837 3 NEAKLVVYGAE-----VICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQD------ 71 (106)
T ss_pred ceeEEEEecch-----hhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcc------
Confidence 45578888876 2455553 44455543 34557899997643 3334444443222
Q ss_pred CCCcchhhccCCCCCCCCCCEEEECCeEEe-chHHHHHH
Q 041824 180 SNNNEEEAESSVQPLPPVLPRVFVKGRYVG-GAEEVLRI 217 (289)
Q Consensus 180 s~~~~~~g~~t~~~tv~~LPqIFI~G~~IG-G~del~~L 217 (289)
..- .|.|.|++++|+ |.-.++..
T Consensus 72 ------------ey~---YPlivvedeiVaeGnprlKdi 95 (106)
T COG4837 72 ------------EYF---YPLIVVEDEIVAEGNPRLKDI 95 (106)
T ss_pred ------------ccc---ceEEEEcceEeecCCchHHHH
Confidence 123 399999999997 55444443
No 250
>PRK14292 chaperone protein DnaJ; Provisional
Probab=64.31 E-value=5.7 Score=38.79 Aligned_cols=38 Identities=24% Similarity=0.663 Sum_probs=28.3
Q ss_pred CCcccCCCCceeE---------------eCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 236 KGVCQGCADVRFF---------------PCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 236 ~~~C~~Cgg~rfv---------------pC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
...|..|+|.+.+ +|..|+|.-+.. ...|..|+-.|.+
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 209 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII----------TDPCTVCRGRGRT 209 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec----------CCCCCCCCCceEE
Confidence 3578899987654 699999986652 3479999887765
No 251
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=64.30 E-value=18 Score=33.02 Aligned_cols=22 Identities=18% Similarity=0.526 Sum_probs=15.7
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENF 147 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~ 147 (289)
|-|||+- .|.-|=-|-++|..+
T Consensus 2 VELFTSQ------GCsSCPpAD~~L~~l 23 (202)
T PF06764_consen 2 VELFTSQ------GCSSCPPADRLLSEL 23 (202)
T ss_dssp EEEEE-T------T-TT-HHHHHHHHHH
T ss_pred eeEecCC------CCCCCcHHHHHHHHh
Confidence 6789998 999998888888764
No 252
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.25 E-value=27 Score=31.98 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeEEechH
Q 041824 133 TYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRYVGGAE 212 (289)
Q Consensus 133 tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~IGG~d 212 (289)
....+..+|.+|.-.||+|++.-+.++.. -.+++..+ ....||.+-|||..|...-
T Consensus 11 ~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~-----------------------pfgqlP~l~vDg~~i~QS~ 66 (206)
T KOG1695|consen 11 IRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKM-----------------------PFGQLPVLEVDGKKLVQSR 66 (206)
T ss_pred cchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccC-----------------------CCCCCCEEeECCEeeccHH
Confidence 44788999999999999999999987643 22333321 1235699999999998776
Q ss_pred HHHHH
Q 041824 213 EVLRI 217 (289)
Q Consensus 213 el~~L 217 (289)
.+.++
T Consensus 67 AI~Ry 71 (206)
T KOG1695|consen 67 AILRY 71 (206)
T ss_pred HHHHH
Confidence 66554
No 253
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=64.14 E-value=32 Score=27.49 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=20.5
Q ss_pred EEEEE-ecCCCCCCCCHHHHHHHHHHHh-------C--CCcEEEEEcCCC
Q 041824 120 VVIYT-TTLRGIRKTYEACKAAKSVIEN-------F--GVAVSERDVSMD 159 (289)
Q Consensus 120 VVVYt-tSLrgvR~tC~~C~~ak~iL~~-------~--gV~y~ErDVs~d 159 (289)
|+||. .+ +|+.|++....|.. . ++.+..++++.+
T Consensus 21 vll~Fwa~------wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~ 64 (131)
T cd03009 21 VGLYFSAS------WCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRD 64 (131)
T ss_pred EEEEEECC------CChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCC
Confidence 55554 55 99999976666542 2 444555555543
No 254
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=63.36 E-value=21 Score=29.07 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=26.9
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHHHHHhC-----CCcEEEEEcCC
Q 041824 117 ENKVVIYTTTLRGIRKTYEACKAAKSVIENF-----GVAVSERDVSM 158 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~-----gV~y~ErDVs~ 158 (289)
.+-|||+.++ .+|+.|+.+.-+++.+ .+.|-.+||+.
T Consensus 21 ~kliVvdF~a-----~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde 62 (106)
T KOG0907|consen 21 DKLVVVDFYA-----TWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE 62 (106)
T ss_pred CCeEEEEEEC-----CCCcchhhhhhHHHHHHHHCCCCEEEEEeccc
Confidence 3456665544 2999999999888865 35567889986
No 255
>PF13728 TraF: F plasmid transfer operon protein
Probab=63.32 E-value=24 Score=32.15 Aligned_cols=36 Identities=8% Similarity=0.350 Sum_probs=29.2
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEcC
Q 041824 116 GENKVVIYTTTLRGIRKTYEACKAAKSVIE----NFGVAVSERDVS 157 (289)
Q Consensus 116 ~~~kVVVYttSLrgvR~tC~~C~~ak~iL~----~~gV~y~ErDVs 157 (289)
+.-.+++|..+ +|++|+...-+|+ .+|+.+..++++
T Consensus 120 ~~~gL~~F~~~------~C~~C~~~~pil~~~~~~yg~~v~~vs~D 159 (215)
T PF13728_consen 120 QKYGLFFFYRS------DCPYCQQQAPILQQFADKYGFSVIPVSLD 159 (215)
T ss_pred hCeEEEEEEcC------CCchhHHHHHHHHHHHHHhCCEEEEEecC
Confidence 45678999999 9999998776665 578888888886
No 256
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=63.27 E-value=18 Score=34.12 Aligned_cols=36 Identities=11% Similarity=0.365 Sum_probs=26.3
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEcCC
Q 041824 117 ENKVVIYTTTLRGIRKTYEACKAAKSVIE----NFGVAVSERDVSM 158 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~~C~~ak~iL~----~~gV~y~ErDVs~ 158 (289)
...||.|..+ +|+.|+...-+|+ .+|+.+..++++.
T Consensus 167 k~~Lv~F~As------wCp~C~~~~P~L~~la~~yg~~Vi~VsvD~ 206 (271)
T TIGR02740 167 KSGLFFFFKS------DCPYCHQQAPILQAFEDRYGIEVLPVSVDG 206 (271)
T ss_pred CeEEEEEECC------CCccHHHHhHHHHHHHHHcCcEEEEEeCCC
Confidence 3456667777 9999998877665 5677777777764
No 257
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=63.25 E-value=10 Score=32.05 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=39.1
Q ss_pred HHHHHHHhCCCcEEEEE-cCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeEEechHHHHHH
Q 041824 139 AAKSVIENFGVAVSERD-VSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRYVGGAEEVLRI 217 (289)
Q Consensus 139 ~ak~iL~~~gV~y~ErD-Vs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~IGG~del~~L 217 (289)
.++.++...|++.++.. ...+.++++++++....- ..-| +..+|.++|||+++=|.+.+..+
T Consensus 125 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a--------------~~~g---i~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 125 VLAAVAAAAGLDADELLAAADDPAVKAALRANTEEA--------------IARG---VFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred HHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHH--------------HHcC---CCcCCeEEECCeeecccccHHHH
Confidence 57788889998754322 223455666666543211 0011 23449999999999999887654
Q ss_pred H
Q 041824 218 V 218 (289)
Q Consensus 218 ~ 218 (289)
.
T Consensus 188 ~ 188 (192)
T cd03022 188 E 188 (192)
T ss_pred H
Confidence 3
No 258
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=63.12 E-value=11 Score=36.19 Aligned_cols=53 Identities=13% Similarity=0.279 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeEEechH
Q 041824 133 TYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRYVGGAE 212 (289)
Q Consensus 133 tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~IGG~d 212 (289)
.-|+|-++-.+|+.++|+|+.++-++ +.+ .++ -+||-|-.||++|-+.+
T Consensus 60 LSPfClKvEt~lR~~~IpYE~~~~~~--------~~r-Sr~----------------------G~lPFIELNGe~iaDS~ 108 (281)
T KOG4244|consen 60 LSPFCLKVETFLRAYDIPYEIVDCSL--------KRR-SRN----------------------GTLPFIELNGEHIADSD 108 (281)
T ss_pred CChHHHHHHHHHHHhCCCceeccccc--------eee-ccC----------------------CCcceEEeCCeeccccH
Confidence 35899999999999999999988764 111 111 24599999999999988
Q ss_pred HHHH
Q 041824 213 EVLR 216 (289)
Q Consensus 213 el~~ 216 (289)
-+..
T Consensus 109 ~I~~ 112 (281)
T KOG4244|consen 109 LIED 112 (281)
T ss_pred HHHH
Confidence 7653
No 259
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=63.04 E-value=4.4 Score=39.16 Aligned_cols=85 Identities=19% Similarity=0.235 Sum_probs=55.3
Q ss_pred HHHhhhcCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChh-HHHHHHHHHcccccccCCCCCc
Q 041824 105 LERFERICPPDGENKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRG-FKEELRELMMRRRRRSSSSNNN 183 (289)
Q Consensus 105 l~~f~~~~pp~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~-~reEL~~llg~~~~~~~~s~~~ 183 (289)
+.+|...-|+.. .|+|.-+ +--..++|+..+.++||+|+++||+--.+ ..+-.--++.-.
T Consensus 15 ~~~~ka~~~~e~---~vLyhhp------ysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~---------- 75 (325)
T KOG4420|consen 15 EAASKAHWPRES---LVLYHHP------YSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG---------- 75 (325)
T ss_pred hhhcCCCCchhc---ceeeecC------cccccceeeeehhhcccccceeeccCccccccCchheecCCC----------
Confidence 334444444433 8899988 66888999999999999999999985322 111111111110
Q ss_pred chhhccCCCCCCCCCCEEEECCeEEechHHHHHHHHh
Q 041824 184 EEEAESSVQPLPPVLPRVFVKGRYVGGAEEVLRIVEE 220 (289)
Q Consensus 184 ~~~g~~t~~~tv~~LPqIFI~G~~IGG~del~~L~E~ 220 (289)
..+ |.+.-+...|-.+.++.++.|.
T Consensus 76 ---------gev---PVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 76 ---------GEV---PVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ---------CCC---ceEecCCeecccHHHHHHHHHH
Confidence 123 7655455567889999988876
No 260
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=62.38 E-value=11 Score=34.95 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=25.9
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEc
Q 041824 114 PDGENKVVIYTTTLRGIRKTYEACKAAKSVIE----NFGVAVSERDV 156 (289)
Q Consensus 114 p~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~----~~gV~y~ErDV 156 (289)
+.++..|+||+=. .|+||++.-.-+. .-+|.+..+.+
T Consensus 115 ~~ak~~I~vFtDp------~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 115 ADAPRIVYVFADP------NCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred CCCCeEEEEEECC------CChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 3445568888888 9999999866554 33477776654
No 261
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=62.18 E-value=5.3 Score=36.21 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=24.1
Q ss_pred eEeCCCCCCcceeeeccCCCCccccccCCccCcCCccc
Q 041824 247 FFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLVL 284 (289)
Q Consensus 247 fvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLvr 284 (289)
-..|+.|+|+-+++... .+|+.|+-.|-++
T Consensus 99 ~~~C~~C~G~G~~i~~~--------~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQ--------RECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEEecCC--------CCCCCCCCccEEe
Confidence 78999999998776532 4899999988764
No 262
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=61.64 E-value=15 Score=33.09 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=27.1
Q ss_pred EEEEEecCCCCCCCCHHHHHH----HHHHHhCCCcEEEEEcCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAA----KSVIENFGVAVSERDVSM 158 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~a----k~iL~~~gV~y~ErDVs~ 158 (289)
||+|..+ +|++|++. +++-+.+|+.+.-+.++.
T Consensus 73 lV~Fwas------wCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~ 109 (181)
T PRK13728 73 VVLFMQG------HCPYCHQFDPVLKQLAQQYGFSVFPYTLDG 109 (181)
T ss_pred EEEEECC------CCHhHHHHHHHHHHHHHHcCCEEEEEEeCC
Confidence 8899999 99999987 677777898887777653
No 263
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=60.94 E-value=27 Score=36.28 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=28.7
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHH-------Hh-CCCcEEEEEcCCChhHHHHHHHHHc
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVI-------EN-FGVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL-------~~-~gV~y~ErDVs~d~~~reEL~~llg 171 (289)
.|+|+.+. .+|..|+..+... +. .++.+-.+|++.+.....++.+..+
T Consensus 476 ~VlVdF~A-----~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~ 531 (571)
T PRK00293 476 PVMLDLYA-----DWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYN 531 (571)
T ss_pred cEEEEEEC-----CcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcC
Confidence 35554444 2999999875532 12 3577778899865433344554444
No 264
>PRK14283 chaperone protein DnaJ; Provisional
Probab=60.00 E-value=7.7 Score=38.07 Aligned_cols=37 Identities=30% Similarity=0.786 Sum_probs=26.1
Q ss_pred CcccCCCCceeE---------------eCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 237 GVCQGCADVRFF---------------PCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 237 ~~C~~Cgg~rfv---------------pC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..|..|.|.+.+ +|..|+|.-+.. ...|..|+-.|.+
T Consensus 164 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v 215 (378)
T PRK14283 164 KTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV----------EKPCSNCHGKGVV 215 (378)
T ss_pred ccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec----------CCCCCCCCCceee
Confidence 468888887553 588888886552 2468888877765
No 265
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=59.86 E-value=65 Score=24.49 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHhCCCc---EEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEE-CCeEE
Q 041824 133 TYEACKAAKSVIENFGVA---VSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFV-KGRYV 208 (289)
Q Consensus 133 tC~~C~~ak~iL~~~gV~---y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI-~G~~I 208 (289)
.=+.|-++..+|+-.+.+ |+.+-.+. +. . .....||.+.. +++.|
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-~~----------~--------------------Sptg~LP~L~~~~~~~v 61 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-PW----------L--------------------SPTGELPALIDSGGTWV 61 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-CC----------c--------------------CCCCCCCEEEECCCcEE
Confidence 458999999999999999 65554432 10 0 01135799999 99999
Q ss_pred echHHHHHHH
Q 041824 209 GGAEEVLRIV 218 (289)
Q Consensus 209 GG~del~~L~ 218 (289)
.|+.++.+..
T Consensus 62 sg~~~Iv~yL 71 (72)
T PF10568_consen 62 SGFRNIVEYL 71 (72)
T ss_pred ECHHHHHHhh
Confidence 9999998753
No 266
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=58.19 E-value=16 Score=31.54 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=28.6
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhC-----C-CcEEEEEcCCChhHHH
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENF-----G-VAVSERDVSMDRGFKE 164 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~-----g-V~y~ErDVs~d~~~re 164 (289)
||-|+.+ +|+.|+.+--+|++. + +.|..+||+..+++.+
T Consensus 27 VvdF~A~------WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~ 71 (142)
T PLN00410 27 VIRFGHD------WDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNT 71 (142)
T ss_pred EEEEECC------CChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHH
Confidence 4556666 999999998888754 2 4568899997765443
No 267
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=57.52 E-value=5.6 Score=28.50 Aligned_cols=38 Identities=24% Similarity=0.481 Sum_probs=24.2
Q ss_pred CCceeEeCCCCCCcceeeeccCC-CCccccccCCccCcC
Q 041824 243 ADVRFFPCFRCNGSCKLVINMQP-RGKTAALRCPDCNEN 280 (289)
Q Consensus 243 gg~rfvpC~~C~GS~K~~~~~~~-~g~~~~~rC~~CNEN 280 (289)
||.=|+.|..|.--=.+-.+..- ......+||..|.|-
T Consensus 2 GGAPFv~C~~C~~lLqlP~~~~~~~k~~~klrCGaCs~v 40 (46)
T PF11331_consen 2 GGAPFVVCSSCFELLQLPAKFSLSKKNQQKLRCGACSEV 40 (46)
T ss_pred CCCCEeECccHHHHHcCCCccCCCccceeEEeCCCCcee
Confidence 68889999999865433322110 111347899999874
No 268
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.37 E-value=8.8 Score=38.30 Aligned_cols=33 Identities=39% Similarity=0.772 Sum_probs=23.8
Q ss_pred CceeEeCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 244 DVRFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 244 g~rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
-.+.+.|..|+||-- . .+ .....|+.||-+|.+
T Consensus 139 ~~~~~~C~~C~GsGa---k---~g-t~~~tC~tC~G~G~v 171 (371)
T COG0484 139 VTRSVTCSTCHGSGA---K---PG-TDPKTCPTCNGSGQV 171 (371)
T ss_pred cceeeECCcCCCCCC---C---CC-CCCCcCCCCCCcCeE
Confidence 356799999999921 1 11 237899999999964
No 269
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=56.92 E-value=49 Score=26.75 Aligned_cols=27 Identities=7% Similarity=0.019 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHh-------C--CCcEEEEEcCCC
Q 041824 133 TYEACKAAKSVIEN-------F--GVAVSERDVSMD 159 (289)
Q Consensus 133 tC~~C~~ak~iL~~-------~--gV~y~ErDVs~d 159 (289)
+|+.|+.....|+. . ++.+..++++.+
T Consensus 28 wC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~ 63 (132)
T cd02964 28 WCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRS 63 (132)
T ss_pred CCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC
Confidence 99999986655532 2 344555555544
No 270
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=56.72 E-value=10 Score=41.00 Aligned_cols=46 Identities=28% Similarity=0.668 Sum_probs=34.8
Q ss_pred CCcccCCCCceeEeCCCCCCcceeeeccCCCCccccccCCccCcCCc--ccCCCCC
Q 041824 236 KGVCQGCADVRFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGL--VLCPLCS 289 (289)
Q Consensus 236 ~~~C~~Cgg~rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGL--vrCp~C~ 289 (289)
.-.|..||-. .-|++|+.+.-.+... + .++|.+|+-..- ..||.|.
T Consensus 435 ~l~C~~Cg~v--~~Cp~Cd~~lt~H~~~---~---~L~CH~Cg~~~~~p~~Cp~Cg 482 (730)
T COG1198 435 LLLCRDCGYI--AECPNCDSPLTLHKAT---G---QLRCHYCGYQEPIPQSCPECG 482 (730)
T ss_pred eeecccCCCc--ccCCCCCcceEEecCC---C---eeEeCCCCCCCCCCCCCCCCC
Confidence 4689999864 6799999996554442 2 799999998743 5799993
No 271
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=56.16 E-value=7.2 Score=41.34 Aligned_cols=41 Identities=34% Similarity=1.022 Sum_probs=0.0
Q ss_pred ccCCCCcee------------------------EeCCCCCCcceeeeccCCCCccccccCCccCcCCcc-cCCCC
Q 041824 239 CQGCADVRF------------------------FPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV-LCPLC 288 (289)
Q Consensus 239 C~~Cgg~rf------------------------vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv-rCp~C 288 (289)
|..|+|.+| +||+.|.|.-++-+-. .|+.|+-.|-+ .|.+|
T Consensus 21 c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~---------~c~~c~G~gkv~~c~~c 86 (715)
T COG1107 21 CPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYD---------TCPECGGTGKVLTCDIC 86 (715)
T ss_pred cccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEe---------ecccCCCceeEEeeccc
No 272
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=56.07 E-value=20 Score=27.18 Aligned_cols=35 Identities=9% Similarity=0.104 Sum_probs=25.6
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHh----C--CCcEEEEEcCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIEN----F--GVAVSERDVSMD 159 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~----~--gV~y~ErDVs~d 159 (289)
-|++|.++ +|+.|+.++.+|+. + .|.|-.+|++..
T Consensus 15 ~~~~f~~~------~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~ 55 (103)
T cd02982 15 LLVLFYNK------DDSESEELRERFKEVAKKFKGKLLFVVVDADDF 55 (103)
T ss_pred EEEEEEcC------ChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh
Confidence 35566666 89999999998875 2 366777777653
No 273
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=55.76 E-value=19 Score=30.25 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=29.8
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHHHHHhC-----C-CcEEEEEcCCChhHHH
Q 041824 117 ENKVVIYTTTLRGIRKTYEACKAAKSVIENF-----G-VAVSERDVSMDRGFKE 164 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~-----g-V~y~ErDVs~d~~~re 164 (289)
.+-|||..+. .+|+.|+.+-.+|++. + +.|..+||+..+++.+
T Consensus 14 ~klVVVdF~a-----~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~ 62 (114)
T cd02986 14 EKVLVLRFGR-----DEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQ 62 (114)
T ss_pred CCEEEEEEeC-----CCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHH
Confidence 3445554443 3999999998888764 3 7788999987655443
No 274
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=55.35 E-value=12 Score=44.27 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=32.7
Q ss_pred EEechHHHHHHHHhCcHHHHhccCCCc-----ccCCcccCCCCcee------------EeCCCCCCcce
Q 041824 207 YVGGAEEVLRIVEEGWFGELIEGIPIR-----KLKGVCQGCADVRF------------FPCFRCNGSCK 258 (289)
Q Consensus 207 ~IGG~del~~L~E~G~L~~lL~~~~~~-----~~~~~C~~Cgg~rf------------vpC~~C~GS~K 258 (289)
|+|=+|++++|...=...+. +++.+. ...+.|+.|.|.+. ++|+.|+|.+-
T Consensus 1574 Y~g~fd~IR~lFA~~~~ak~-rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1574 YFDIAPSLRNFYASLTQAKA-LNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred hhhhHHHHHHHHhcCHHHHH-cCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCC
Confidence 55567888877754333332 222221 13678999999885 58999999863
No 275
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.05 E-value=11 Score=41.70 Aligned_cols=22 Identities=32% Similarity=0.832 Sum_probs=18.4
Q ss_pred CCcccCCCCcee------------EeCCCCCCcc
Q 041824 236 KGVCQGCADVRF------------FPCFRCNGSC 257 (289)
Q Consensus 236 ~~~C~~Cgg~rf------------vpC~~C~GS~ 257 (289)
.+.|..|.|.++ ++|+.|+|++
T Consensus 736 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R 769 (924)
T TIGR00630 736 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKR 769 (924)
T ss_pred CCCCCCCccceEEEEEccCCCCcccCCCCcCCce
Confidence 578999999886 4789998886
No 276
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=54.85 E-value=22 Score=29.05 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=14.6
Q ss_pred CCCEEEECCeEEechHHHH
Q 041824 197 VLPRVFVKGRYVGGAEEVL 215 (289)
Q Consensus 197 ~LPqIFI~G~~IGG~del~ 215 (289)
..|.+||||+++.|.-++.
T Consensus 136 ~tPt~~inG~~~~~~~~~~ 154 (162)
T PF13462_consen 136 GTPTFFINGKYVVGPYTIE 154 (162)
T ss_dssp SSSEEEETTCEEETTTSHH
T ss_pred cccEEEECCEEeCCCCCHH
Confidence 4499999999998654443
No 277
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=54.69 E-value=22 Score=31.14 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=28.3
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRG 161 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~ 161 (289)
+|.|.+-|-+ --+.+++++.+|+.+||.|+.+-++.|+.
T Consensus 2 ~V~Ii~gs~S----D~~~~~~a~~~L~~~gi~~~~~V~saHR~ 40 (150)
T PF00731_consen 2 KVAIIMGSTS----DLPIAEEAAKTLEEFGIPYEVRVASAHRT 40 (150)
T ss_dssp EEEEEESSGG----GHHHHHHHHHHHHHTT-EEEEEE--TTTS
T ss_pred eEEEEeCCHH----HHHHHHHHHHHHHHcCCCEEEEEEeccCC
Confidence 4555555533 67899999999999999999988888763
No 278
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=54.50 E-value=16 Score=29.31 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=27.4
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHh----C-CCcEEEEEcC
Q 041824 114 PDGENKVVIYTTTLRGIRKTYEACKAAKSVIEN----F-GVAVSERDVS 157 (289)
Q Consensus 114 p~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~----~-gV~y~ErDVs 157 (289)
|.....|++|+-. .|++|.+....|+. + .|.+..+++.
T Consensus 3 ~~a~~~i~~f~D~------~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 3 PNGDVTIVEFFDY------NCGYCKKLAPELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CCCCEEEEEEECC------CChhHHHhhHHHHHHHHHCCCceEEEEeCC
Confidence 3456678888888 99999988766655 3 2567777764
No 279
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=54.50 E-value=8.5 Score=25.30 Aligned_cols=28 Identities=18% Similarity=0.643 Sum_probs=15.1
Q ss_pred eCCCCCCcceeeeccCCCCccccccCCccCc
Q 041824 249 PCFRCNGSCKLVINMQPRGKTAALRCPDCNE 279 (289)
Q Consensus 249 pC~~C~GS~K~~~~~~~~g~~~~~rC~~CNE 279 (289)
.|.+|+-..-+...... + ...+||+|..
T Consensus 7 ~C~~Cg~~fe~~~~~~~-~--~~~~CP~Cg~ 34 (41)
T smart00834 7 RCEDCGHTFEVLQKISD-D--PLATCPECGG 34 (41)
T ss_pred EcCCCCCEEEEEEecCC-C--CCCCCCCCCC
Confidence 46666655444332211 1 2568888876
No 280
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=54.35 E-value=18 Score=29.56 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=30.3
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHH----HHHHhC----CCcEEEEEcCCChh
Q 041824 114 PDGENKVVIYTTTLRGIRKTYEACKAAK----SVIENF----GVAVSERDVSMDRG 161 (289)
Q Consensus 114 p~~~~kVVVYttSLrgvR~tC~~C~~ak----~iL~~~----gV~y~ErDVs~d~~ 161 (289)
|..+..|++|+.- .|++|.+.- .+++.+ .|.|..+++..+..
T Consensus 10 ~~a~~~v~~f~d~------~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 59 (162)
T PF13462_consen 10 PDAPITVTEFFDF------QCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKH 59 (162)
T ss_dssp TTTSEEEEEEE-T------TSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHH
T ss_pred CCCCeEEEEEECC------CCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccch
Confidence 5556679999999 999998764 344454 67889999976543
No 281
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=54.17 E-value=46 Score=24.82 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=22.4
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHHHHHh---------CCCcEEEEEcCC
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKSVIEN---------FGVAVSERDVSM 158 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~iL~~---------~gV~y~ErDVs~ 158 (289)
+.|+||.++ .+|+.|+..++.+-. .++-+-.+|++.
T Consensus 18 kpvlv~f~a-----~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~ 62 (82)
T PF13899_consen 18 KPVLVDFGA-----DWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDD 62 (82)
T ss_dssp SEEEEEEET-----TTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTT
T ss_pred CCEEEEEEC-----CCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCC
Confidence 346555554 399999987765522 345556677743
No 282
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=53.46 E-value=9.7 Score=31.88 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=16.3
Q ss_pred CcccCCCCceeEeCCCCCCccee
Q 041824 237 GVCQGCADVRFFPCFRCNGSCKL 259 (289)
Q Consensus 237 ~~C~~Cgg~rfvpC~~C~GS~K~ 259 (289)
..|..|.|.+.++|..|+|+..+
T Consensus 76 ~~C~~C~G~Gk~~C~~C~G~G~~ 98 (111)
T PLN03165 76 SKCINCDGAGSLTCTTCQGSGIQ 98 (111)
T ss_pred EECCCCCCcceeeCCCCCCCEEE
Confidence 46777777777777777777543
No 283
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=52.35 E-value=53 Score=26.03 Aligned_cols=36 Identities=8% Similarity=0.130 Sum_probs=23.1
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhC----CCcEEEEEcCCCh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENF----GVAVSERDVSMDR 160 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~----gV~y~ErDVs~d~ 160 (289)
-||.|..+ +|+.|.+....|+.+ ++.+-.+++..+.
T Consensus 28 vvv~F~a~------~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~ 67 (127)
T cd03010 28 YLLNVWAS------WCAPCREEHPVLMALARQGRVPIYGINYKDNP 67 (127)
T ss_pred EEEEEEcC------cCHHHHHHHHHHHHHHHhcCcEEEEEECCCCH
Confidence 35566666 999999877777544 4555555554443
No 284
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=52.08 E-value=11 Score=24.70 Aligned_cols=32 Identities=22% Similarity=0.516 Sum_probs=20.7
Q ss_pred EeCCCCCCcceeeeccCCCCccccccCCccCcC
Q 041824 248 FPCFRCNGSCKLVINMQPRGKTAALRCPDCNEN 280 (289)
Q Consensus 248 vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNEN 280 (289)
+.|+.|+...++-.+.-. .....++|+.|...
T Consensus 3 ~~CP~C~~~~~v~~~~~~-~~~~~v~C~~C~~~ 34 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLG-ANGGKVRCGKCGHV 34 (38)
T ss_pred EECCCCCCEEEeCHHHcC-CCCCEEECCCCCCE
Confidence 679999988777654321 11226788888653
No 285
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=51.58 E-value=40 Score=34.56 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=26.3
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhC-------CCcEEEEEcCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENF-------GVAVSERDVSMD 159 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~-------gV~y~ErDVs~d 159 (289)
-||.|..+ +|++|+.+..+|+.. ++.|-.+|++.+
T Consensus 374 VLV~FyAp------WC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~ 415 (463)
T TIGR00424 374 WLVVLYAP------WCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD 415 (463)
T ss_pred EEEEEECC------CChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence 36667777 999999988877532 467788888865
No 286
>PF15616 TerY-C: TerY-C metal binding domain
Probab=50.81 E-value=13 Score=32.06 Aligned_cols=39 Identities=31% Similarity=0.706 Sum_probs=28.4
Q ss_pred CcccCCCCc-eeEeCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 237 GVCQGCADV-RFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 237 ~~C~~Cgg~-rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..|..||.. .|+.| .|+ |++--++ .+ ...||+|..+|..
T Consensus 78 PgCP~CGn~~~fa~C-~CG---kl~Ci~g-~~---~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVC-GCG---KLFCIDG-EG---EVTCPWCGNEGSF 117 (131)
T ss_pred CCCCCCcChhcEEEe-cCC---CEEEeCC-CC---CEECCCCCCeeee
Confidence 479999998 88998 575 5554332 12 6899999988753
No 287
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=50.19 E-value=10 Score=31.62 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=32.2
Q ss_pred HHHHHHHHhCCCcEEEEEcC-CChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeEEechHHH
Q 041824 138 KAAKSVIENFGVAVSERDVS-MDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRYVGGAEEV 214 (289)
Q Consensus 138 ~~ak~iL~~~gV~y~ErDVs-~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~IGG~del 214 (289)
..+..++...|++.++.+-. .+.+.++.+++..... +.. .+...|.+||||+++-+...+
T Consensus 100 ~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~--------------~~~---gi~gTPt~iInG~~~~~~~~~ 160 (178)
T cd03019 100 DDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLA--------------KKY---KITGVPAFVVNGKYVVNPSAI 160 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHH--------------HHc---CCCCCCeEEECCEEEEChhhc
Confidence 46888888888865433222 2333334443322110 001 123449999999987655433
No 288
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=49.24 E-value=17 Score=27.10 Aligned_cols=39 Identities=26% Similarity=0.558 Sum_probs=26.1
Q ss_pred ceeEeCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 245 VRFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 245 ~rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
..++.|+.|++..++-+.+...=+.--+-||.|..--||
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~EtlI 40 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETLI 40 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceEEE
Confidence 368999999999988766532111124788888765444
No 289
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=49.05 E-value=40 Score=31.13 Aligned_cols=75 Identities=15% Similarity=0.253 Sum_probs=48.9
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCC--C-hhHHHHHHHHHcccccccCCCCCcchhhccCCCCC
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSM--D-RGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPL 194 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~--d-~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~t 194 (289)
.|-++|+.= |..|. .+||-.|.-+||+|+.+-|+. + ..+-.|+++..... +
T Consensus 4 ~KpiLYSYW----rSSCs--wRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~--------------------k 57 (217)
T KOG0868|consen 4 AKPILYSYW----RSSCS--WRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPME--------------------K 57 (217)
T ss_pred ccchhhhhh----cccch--HHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchh--------------------h
Confidence 355666543 23664 588999999999998877763 2 22334566553321 4
Q ss_pred CCCCCEEEECCeEEechHHHHHHHHhC
Q 041824 195 PPVLPRVFVKGRYVGGAEEVLRIVEEG 221 (289)
Q Consensus 195 v~~LPqIFI~G~~IGG~del~~L~E~G 221 (289)
| |.+.|||..|-..-.+.++.|+-
T Consensus 58 V---P~L~i~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 58 V---PTLVIDGLTLTESLAIIEYLEET 81 (217)
T ss_pred C---CeEEECCEEeehHHHHHHHHHhc
Confidence 5 99999999997766666655543
No 290
>PTZ00062 glutaredoxin; Provisional
Probab=48.88 E-value=53 Score=29.96 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=24.0
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHHHHHhC-----CCcEEEEEc
Q 041824 117 ENKVVIYTTTLRGIRKTYEACKAAKSVIENF-----GVAVSERDV 156 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~-----gV~y~ErDV 156 (289)
...+|+|.++ .||+.|+.+..+|..+ .|.|..+|.
T Consensus 17 ~g~~vl~f~a-----~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~ 56 (204)
T PTZ00062 17 TGKLVLYVKS-----SKEPEYEQLMDVCNALVEDFPSLEFYVVNL 56 (204)
T ss_pred CCcEEEEEeC-----CCCcchHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 3556777644 2899999999888765 355555553
No 291
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=47.09 E-value=76 Score=23.23 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=22.7
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHH----hC---CCcEEEEEcCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIE----NF---GVAVSERDVSMD 159 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~----~~---gV~y~ErDVs~d 159 (289)
-|+.|..+ +|+.|.+....|. .+ ++.+.-++++.+
T Consensus 22 ~ll~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 22 VLVNFWAS------WCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred EEEEeecc------cChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 46666666 9999986554444 33 466667777654
No 292
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=46.10 E-value=65 Score=27.94 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=24.1
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHH---hCCCcEEEEEcCCChh
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIE---NFGVAVSERDVSMDRG 161 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~---~~gV~y~ErDVs~d~~ 161 (289)
||.|..+ +|+.|++..-.|. ..++.+.-++++.+++
T Consensus 72 vv~Fwat------wC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~ 110 (185)
T PRK15412 72 LLNVWAT------WCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQ 110 (185)
T ss_pred EEEEECC------CCHHHHHHHHHHHHHHHcCCEEEEEECCCCHH
Confidence 5556666 9999998655554 4477777777655543
No 293
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.09 E-value=25 Score=34.31 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=40.7
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhC------CCcEEEEEcCCChhHHHHHHHHHcccccccCCCCCcchhhccCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENF------GVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQ 192 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~------gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~ 192 (289)
.|+||.-+ .+|+.|+...-+|+.. .+..-.+|++.++.+ -..+|.+
T Consensus 45 PVlV~fWa-----p~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~v----Aaqfgiq------------------- 96 (304)
T COG3118 45 PVLVDFWA-----PWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMV----AAQFGVQ------------------- 96 (304)
T ss_pred CeEEEecC-----CCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhH----HHHhCcC-------------------
Confidence 46555544 3999999999999864 234457777776654 3344443
Q ss_pred CCCCCCCE--EEECCeEEech
Q 041824 193 PLPPVLPR--VFVKGRYVGGA 211 (289)
Q Consensus 193 ~tv~~LPq--IFI~G~~IGG~ 211 (289)
++|. +|++|+.|-||
T Consensus 97 ----sIPtV~af~dGqpVdgF 113 (304)
T COG3118 97 ----SIPTVYAFKDGQPVDGF 113 (304)
T ss_pred ----cCCeEEEeeCCcCcccc
Confidence 2354 57899999777
No 294
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.92 E-value=63 Score=32.99 Aligned_cols=73 Identities=22% Similarity=0.393 Sum_probs=45.0
Q ss_pred HHHHHHhhhcCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhC---C--CcEEEEEcCCChhHHHHHHHHHcccccc
Q 041824 102 KSVLERFERICPPDGENKVVIYTTTLRGIRKTYEACKAAKSVIENF---G--VAVSERDVSMDRGFKEELRELMMRRRRR 176 (289)
Q Consensus 102 ~~~l~~f~~~~pp~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~---g--V~y~ErDVs~d~~~reEL~~llg~~~~~ 176 (289)
.+.+++...+ .+.-..--|.+- +|..|-.|.+.|.-+ + |...-+|=. -|++|..++-
T Consensus 105 q~vieqik~i---~g~~~FETy~Sl------tC~nCPDVVQALN~msvlNp~I~H~~IdGa---~Fq~Evear~------ 166 (520)
T COG3634 105 QDVIEQIKAI---DGDFHFETYFSL------TCHNCPDVVQALNLMSVLNPRIKHTAIDGA---LFQDEVEARN------ 166 (520)
T ss_pred HHHHHHHHhc---CCceeEEEEEEe------eccCChHHHHHHHHHHhcCCCceeEEecch---hhHhHHHhcc------
Confidence 3445555444 344456677777 777777666666544 3 334444433 4788887652
Q ss_pred cCCCCCcchhhccCCCCCCCCCCEEEECCeEEec
Q 041824 177 SSSSNNNEEEAESSVQPLPPVLPRVFVKGRYVGG 210 (289)
Q Consensus 177 ~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~IGG 210 (289)
...+|.||.||+..|.
T Consensus 167 ------------------IMaVPtvflnGe~fg~ 182 (520)
T COG3634 167 ------------------IMAVPTVFLNGEEFGQ 182 (520)
T ss_pred ------------------ceecceEEEcchhhcc
Confidence 1234999999998874
No 295
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=45.91 E-value=11 Score=24.91 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=4.2
Q ss_pred cccCCccC
Q 041824 271 ALRCPDCN 278 (289)
Q Consensus 271 ~~rC~~CN 278 (289)
.+.|..|.
T Consensus 21 ~~~C~~Cg 28 (33)
T PF08792_consen 21 YEVCIFCG 28 (33)
T ss_pred eEEcccCC
Confidence 34555554
No 296
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=45.87 E-value=12 Score=24.05 Aligned_cols=24 Identities=38% Similarity=0.719 Sum_probs=12.0
Q ss_pred CCCCCCcceeeeccCCCCccccccCCccCc
Q 041824 250 CFRCNGSCKLVINMQPRGKTAALRCPDCNE 279 (289)
Q Consensus 250 C~~C~GS~K~~~~~~~~g~~~~~rC~~CNE 279 (289)
|+.|.+..+..... -.++|+.|+.
T Consensus 6 C~~CG~~t~~~~~g------~~r~C~~Cg~ 29 (32)
T PF09297_consen 6 CGRCGAPTKPAPGG------WARRCPSCGH 29 (32)
T ss_dssp -TTT--BEEE-SSS------S-EEESSSS-
T ss_pred cCcCCccccCCCCc------CEeECCCCcC
Confidence 66777776554332 2789999863
No 297
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=45.04 E-value=12 Score=37.47 Aligned_cols=55 Identities=27% Similarity=0.521 Sum_probs=41.4
Q ss_pred CCeEEechHHHHHHHHhCcHHHHh--ccCCCcccCCcccCCCCc-----------eeEeCCCCCCcce
Q 041824 204 KGRYVGGAEEVLRIVEEGWFGELI--EGIPIRKLKGVCQGCADV-----------RFFPCFRCNGSCK 258 (289)
Q Consensus 204 ~G~~IGG~del~~L~E~G~L~~lL--~~~~~~~~~~~C~~Cgg~-----------rfvpC~~C~GS~K 258 (289)
+|+.+-|.+++.++.+.|-.+.|| +.+........|..||.. .+..|+.|++...
T Consensus 290 ~G~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 357 (409)
T TIGR00108 290 DGLACYGEDEVLKALDLGAVETLIVSEDLEYIRVTYKCAECGEVIEKTVRELKDKKFAICPACGQEMD 357 (409)
T ss_pred CCcEEeCHHHHHHHHHhCCCcEEEEeccccceeEEEEcCCCCceeecccccccccccccCcccCcccc
Confidence 378899999999999999999987 444444445678888842 3457888888753
No 298
>PLN02309 5'-adenylylsulfate reductase
Probab=44.54 E-value=49 Score=33.85 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=26.0
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHHHHHhC-------CCcEEEEEcC
Q 041824 117 ENKVVIYTTTLRGIRKTYEACKAAKSVIENF-------GVAVSERDVS 157 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~-------gV~y~ErDVs 157 (289)
+.-||.|..+ +|++|+.+...|+.. +|.|-.+|++
T Consensus 366 k~vlV~FyAp------WC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 366 EPWLVVLYAP------WCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CeEEEEEECC------CChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 4457778888 999999888777543 4666777776
No 299
>PTZ00102 disulphide isomerase; Provisional
Probab=44.25 E-value=64 Score=31.55 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=25.1
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHHHHH-------hC--CCcEEEEEcCCCh
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKSVIE-------NF--GVAVSERDVSMDR 160 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~iL~-------~~--gV~y~ErDVs~d~ 160 (289)
.-+|.|+++ +|++|+++...+. .. .|.+-.+|...+.
T Consensus 51 ~~lv~f~a~------wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~ 96 (477)
T PTZ00102 51 IVLVKFYAP------WCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM 96 (477)
T ss_pred cEEEEEECC------CCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH
Confidence 346677777 9999997765433 22 3677788887654
No 300
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=43.92 E-value=67 Score=30.86 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=24.8
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHH-------hCC--CcEEEEEcCCCh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIE-------NFG--VAVSERDVSMDR 160 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~-------~~g--V~y~ErDVs~d~ 160 (289)
-+|.|+.+ +|++|++....+. ..+ |.+-.+|.+.+.
T Consensus 21 ~~v~f~a~------wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~ 65 (462)
T TIGR01130 21 VLVEFYAP------WCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK 65 (462)
T ss_pred EEEEEECC------CCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH
Confidence 36667777 9999998765443 344 677777777553
No 301
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=43.85 E-value=51 Score=23.45 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHhC------CCcEEEEEcC-CChhHHHHHH
Q 041824 133 TYEACKAAKSVIENF------GVAVSERDVS-MDRGFKEELR 167 (289)
Q Consensus 133 tC~~C~~ak~iL~~~------gV~y~ErDVs-~d~~~reEL~ 167 (289)
+|+.|+.+...|... .+.+..+|+. .++...+.+.
T Consensus 43 ~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (127)
T COG0526 43 WCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFG 84 (127)
T ss_pred cCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHh
Confidence 999999987777643 3678888886 5555444444
No 302
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=43.83 E-value=22 Score=25.34 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=18.6
Q ss_pred EeCCCCCCcceeeec--cCCCCccccccCCccCcCC
Q 041824 248 FPCFRCNGSCKLVIN--MQPRGKTAALRCPDCNENG 281 (289)
Q Consensus 248 vpC~~C~GS~K~~~~--~~~~g~~~~~rC~~CNENG 281 (289)
.||+.|.|.-+.+.. ....+.. ...|..|.--|
T Consensus 2 kPCPfCGg~~~~~~~~~~~~~~~~-~~~C~~Cga~~ 36 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGFDPLDLSH-YFECSTCGASG 36 (53)
T ss_pred CCCCCCCCcceeeEeccCCCCCEE-EEECCCCCCCc
Confidence 489999887664431 1112222 23788887544
No 303
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=43.45 E-value=75 Score=27.15 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=22.2
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhC---CCcEEEEEcCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENF---GVAVSERDVSM 158 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~---gV~y~ErDVs~ 158 (289)
|+.|..+ +|+.|++....|+.+ ++.+-.+++..
T Consensus 67 ll~F~a~------wC~~C~~~~p~l~~l~~~~~~vi~V~~~~ 102 (173)
T TIGR00385 67 LLNVWAS------WCPPCRAEHPYLNELAKDGLPIVGVDYKD 102 (173)
T ss_pred EEEEECC------cCHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 4445555 999999876666543 67777777643
No 304
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=43.18 E-value=28 Score=25.27 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=20.5
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCC
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSM 158 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~ 158 (289)
+.||++. .--....++.+|++.||++..+|-.+
T Consensus 1 ~~l~~~~------~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 1 KKLYTAG------DPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEEE--------HHHHHHHHHHHHHTT--EE--S---
T ss_pred CEEEEcC------CHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 4577777 66788999999999999998876653
No 305
>PRK02935 hypothetical protein; Provisional
Probab=43.11 E-value=14 Score=30.98 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=20.3
Q ss_pred EeCCCCCCcceeeeccCCCCccccccCCccCcC
Q 041824 248 FPCFRCNGSCKLVINMQPRGKTAALRCPDCNEN 280 (289)
Q Consensus 248 vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNEN 280 (289)
|.|++|+--.|+.-+ +-.|.+|||.
T Consensus 71 V~CP~C~K~TKmLGr--------vD~CM~C~~P 95 (110)
T PRK02935 71 VICPSCEKPTKMLGR--------VDACMHCNQP 95 (110)
T ss_pred eECCCCCchhhhccc--------eeecCcCCCc
Confidence 689999999888533 5699999984
No 306
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=42.88 E-value=11 Score=31.88 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCcEEEEEcC-CChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCe-EEechHHHH
Q 041824 138 KAAKSVIENFGVAVSERDVS-MDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGR-YVGGAEEVL 215 (289)
Q Consensus 138 ~~ak~iL~~~gV~y~ErDVs-~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~-~IGG~del~ 215 (289)
..+..++...|++.++.+-. .+++.++++++....- ..- .+..+|.++|||+ .+-|.+.+.
T Consensus 124 ~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a--------------~~~---gv~GvP~~vv~g~~~~~G~~~~~ 186 (193)
T PF01323_consen 124 DVLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEA--------------RQL---GVFGVPTFVVNGKYRFFGADRLD 186 (193)
T ss_dssp HHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHH--------------HHT---TCSSSSEEEETTTEEEESCSSHH
T ss_pred HHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHH--------------HHc---CCcccCEEEECCEEEEECCCCHH
Confidence 35788899999976544432 3456666666543221 001 1234499999999 788887766
Q ss_pred HHH
Q 041824 216 RIV 218 (289)
Q Consensus 216 ~L~ 218 (289)
.|.
T Consensus 187 ~l~ 189 (193)
T PF01323_consen 187 ELE 189 (193)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 307
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=42.69 E-value=31 Score=28.66 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=27.3
Q ss_pred CCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhC------CCcEEEEEcCC
Q 041824 115 DGENKVVIYTTTLRGIRKTYEACKAAKSVIENF------GVAVSERDVSM 158 (289)
Q Consensus 115 ~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~------gV~y~ErDVs~ 158 (289)
.+...|++|+-- .||+|.++-..+... +|.|..+.+..
T Consensus 14 ~~~~~i~~f~D~------~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~~ 57 (178)
T cd03019 14 SGKPEVIEFFSY------GCPHCYNFEPILEAWVKKLPKDVKFEKVPVVF 57 (178)
T ss_pred CCCcEEEEEECC------CCcchhhhhHHHHHHHHhCCCCceEEEcCCcc
Confidence 567778889988 999999876666432 56666666543
No 308
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=42.38 E-value=69 Score=23.89 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=26.4
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHh----CC--CcEEEEEcCCChhHHHHHHHHHc
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIEN----FG--VAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~----~g--V~y~ErDVs~d~~~reEL~~llg 171 (289)
++.|.++ +|+.|.+....|.. ++ -.++.+=|+.|.. .+++++.+.
T Consensus 5 ll~fwa~------~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~-~~~~~~~~~ 55 (95)
T PF13905_consen 5 LLYFWAS------WCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED-EEEWKKFLK 55 (95)
T ss_dssp EEEEE-T------TSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS-HHHHHHHHH
T ss_pred EEEEECC------CCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC-HHHHHHHHH
Confidence 5566677 99999987766653 34 5566666655532 345555543
No 309
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.02 E-value=1e+02 Score=27.87 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=50.4
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCC--hhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMD--RGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPP 196 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d--~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~ 196 (289)
++.+|+.. .=+.|+++...++..|+.|+.+.|+.. .....|+..+... .++
T Consensus 2 ~~~ly~~~------~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~--------------------~kV- 54 (226)
T KOG0867|consen 2 KLKLYGHL------GSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL--------------------GKV- 54 (226)
T ss_pred CceEeecC------CCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC--------------------CCC-
Confidence 46788888 668999999999999999999877643 2233444433221 145
Q ss_pred CCCEEEECCeEEechHHHHHHHH
Q 041824 197 VLPRVFVKGRYVGGAEEVLRIVE 219 (289)
Q Consensus 197 ~LPqIFI~G~~IGG~del~~L~E 219 (289)
|.+--+|-.+-....|.....
T Consensus 55 --P~l~d~~~~l~eS~AI~~Yl~ 75 (226)
T KOG0867|consen 55 --PALEDGGLTLWESHAILRYLA 75 (226)
T ss_pred --CeEecCCeEEeeHHHHHHHHH
Confidence 998888888877766665443
No 310
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=40.63 E-value=29 Score=27.13 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=15.8
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENF 147 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~ 147 (289)
-|+.|..+ +|+.|......|..+
T Consensus 23 ~vl~F~~~------~C~~C~~~~~~l~~~ 45 (123)
T cd03011 23 VLVYFWAT------WCPVCRFTSPTVNQL 45 (123)
T ss_pred EEEEEECC------cChhhhhhChHHHHH
Confidence 45555555 899999886666543
No 311
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=40.49 E-value=21 Score=40.89 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCCcEEEE
Q 041824 138 KAAKSVIENFGVAVSER 154 (289)
Q Consensus 138 ~~ak~iL~~~gV~y~Er 154 (289)
..+|++|+.++|+...+
T Consensus 535 ~~~k~~LE~L~v~H~~~ 551 (1337)
T PRK14714 535 PTVKRTLELLLVPHTVR 551 (1337)
T ss_pred HHHHHHHHHhCCceEec
Confidence 36899999999986543
No 312
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=40.35 E-value=92 Score=26.25 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCcEEEEEcCCC
Q 041824 138 KAAKSVIENFGVAVSERDVSMD 159 (289)
Q Consensus 138 ~~ak~iL~~~gV~y~ErDVs~d 159 (289)
+++++.|+++|+.++.+|+...
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~~ 24 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSDR 24 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTSC
T ss_pred HHHHHHHHHCCCEEEEEeccCC
Confidence 5789999999999999999874
No 313
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=40.28 E-value=33 Score=32.42 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=35.7
Q ss_pred HhhhcCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHH---HHHHHHcc
Q 041824 107 RFERICPPDGENKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKE---ELRELMMR 172 (289)
Q Consensus 107 ~f~~~~pp~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~re---EL~~llg~ 172 (289)
+|++.- +.+++-+|-|+-. -++.+...||+..|+.++..-..+.+..+. ++..++|.
T Consensus 52 ef~r~~-id~~kiaVA~SGG--------~DSsas~iilR~~g~~v~p~t~~Lp~~ir~n~~~l~~~lg~ 111 (255)
T COG1365 52 EFERIK-IDKPKIAVAYSGG--------VDSSASAIILRWAGFTVDPGTAILPDHIRRNKEELETLLGE 111 (255)
T ss_pred hcccCC-CCCceEEEEecCC--------cchHHHHHHHHhhceeeccccccCCHHHhHHHHHHHHHHcc
Confidence 344443 3445556667666 567899999999997776666666544444 44444543
No 314
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=39.89 E-value=16 Score=32.35 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCCcEEEEEcCC-ChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeEEechHH
Q 041824 138 KAAKSVIENFGVAVSERDVSM-DRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRYVGGAEE 213 (289)
Q Consensus 138 ~~ak~iL~~~gV~y~ErDVs~-d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~IGG~de 213 (289)
...+.++...|++-++.+-.+ +..+++.+......- +. ..+...|.++|||+|+=+...
T Consensus 124 ~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a--------------~~---~gI~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 124 ADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAA--------------AD---LQLRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHH--------------HH---cCCCCCCEEEECCEEEEcccc
Confidence 367788888998755433332 233444433321100 00 112334999999999755443
No 315
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=39.26 E-value=21 Score=24.28 Aligned_cols=24 Identities=38% Similarity=0.994 Sum_probs=14.9
Q ss_pred eCCCCCCcceeeeccCCCCccccccCCcc
Q 041824 249 PCFRCNGSCKLVINMQPRGKTAALRCPDC 277 (289)
Q Consensus 249 pC~~C~GS~K~~~~~~~~g~~~~~rC~~C 277 (289)
.|+.|..+. ++.+ ..+| ..-|+.|
T Consensus 2 ~Cp~Cg~~~-~~~D-~~~g---~~vC~~C 25 (43)
T PF08271_consen 2 KCPNCGSKE-IVFD-PERG---ELVCPNC 25 (43)
T ss_dssp SBTTTSSSE-EEEE-TTTT---EEEETTT
T ss_pred CCcCCcCCc-eEEc-CCCC---eEECCCC
Confidence 478887765 4333 2244 5678888
No 316
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=37.95 E-value=1.1e+02 Score=24.39 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHH-------HhCCCcEEEEEcC
Q 041824 133 TYEACKAAKSVI-------ENFGVAVSERDVS 157 (289)
Q Consensus 133 tC~~C~~ak~iL-------~~~gV~y~ErDVs 157 (289)
+|+.|.+-..-| ...||.+--+..+
T Consensus 35 ~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~ 66 (149)
T cd02970 35 GCPFCREYLRALSKLLPELDALGVELVAVGPE 66 (149)
T ss_pred CChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC
Confidence 999998744333 3356666555544
No 317
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=37.83 E-value=87 Score=27.38 Aligned_cols=30 Identities=13% Similarity=0.259 Sum_probs=19.1
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHH----HhCCCcEEEEE
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVI----ENFGVAVSERD 155 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL----~~~gV~y~ErD 155 (289)
|+.|.++ +|+.|++....| +..++.+.-+.
T Consensus 78 vl~F~at------wCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 78 LLMFTAP------SCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEECC------CChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 4455555 999998754433 45566665555
No 318
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=36.77 E-value=78 Score=29.98 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=29.3
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHHHH----HhCCCcEEEEEcCC
Q 041824 116 GENKVVIYTTTLRGIRKTYEACKAAKSVI----ENFGVAVSERDVSM 158 (289)
Q Consensus 116 ~~~kVVVYttSLrgvR~tC~~C~~ak~iL----~~~gV~y~ErDVs~ 158 (289)
+...+++|..+ .|++|++.--+| +.+|+.+..++++.
T Consensus 150 ~~~gL~fFy~~------~C~~C~~~apil~~fa~~ygi~v~~VS~DG 190 (256)
T TIGR02739 150 QSYGLFFFYRG------KSPISQKMAPVIQAFAKEYGISVIPISVDG 190 (256)
T ss_pred hceeEEEEECC------CCchhHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 45678899989 999999876666 56788888887764
No 319
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=36.63 E-value=89 Score=26.90 Aligned_cols=23 Identities=4% Similarity=0.245 Sum_probs=16.5
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIEN 146 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~ 146 (289)
.|+||+.+ .+|+.|++..-.|..
T Consensus 27 ~vlL~FwA-----sWCppCr~e~P~L~~ 49 (146)
T cd03008 27 VLLLFFGA-----VVSPQCQLFAPKLKD 49 (146)
T ss_pred EEEEEEEC-----CCChhHHHHHHHHHH
Confidence 35565554 289999998877754
No 320
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=36.28 E-value=1.2e+02 Score=27.29 Aligned_cols=28 Identities=36% Similarity=0.574 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHhCCCcEEEEEcCCCh
Q 041824 133 TYEACKAAKSVIENFGVAVSERDVSMDR 160 (289)
Q Consensus 133 tC~~C~~ak~iL~~~gV~y~ErDVs~d~ 160 (289)
-.+.=+.+-.+|+.+||+|+.+=||.|+
T Consensus 14 D~~~mk~Aa~~L~~fgi~ye~~VvSAHR 41 (162)
T COG0041 14 DWDTMKKAAEILEEFGVPYEVRVVSAHR 41 (162)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEeccC
Confidence 7778889999999999999999999874
No 321
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=35.68 E-value=19 Score=30.46 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=20.4
Q ss_pred eEeCCCCCCcceeeeccCCCCccccccCCccCcC
Q 041824 247 FFPCFRCNGSCKLVINMQPRGKTAALRCPDCNEN 280 (289)
Q Consensus 247 fvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNEN 280 (289)
-|.|++|+--.|+.-. .-+|.+|++.
T Consensus 69 ~V~CP~C~K~TKmLGr--------~D~CM~C~~p 94 (114)
T PF11023_consen 69 QVECPNCGKQTKMLGR--------VDACMHCKEP 94 (114)
T ss_pred eeECCCCCChHhhhch--------hhccCcCCCc
Confidence 4779999998888533 4599999985
No 322
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=35.40 E-value=24 Score=23.87 Aligned_cols=32 Identities=16% Similarity=0.431 Sum_probs=19.0
Q ss_pred EeCCCCCCcceeeecc----CCCCccccccCCccCc
Q 041824 248 FPCFRCNGSCKLVINM----QPRGKTAALRCPDCNE 279 (289)
Q Consensus 248 vpC~~C~GS~K~~~~~----~~~g~~~~~rC~~CNE 279 (289)
+.|+.|+...-++... .+.+...|.+|.+|+.
T Consensus 1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~ 36 (39)
T PF01096_consen 1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGH 36 (39)
T ss_dssp S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTE
T ss_pred CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCC
Confidence 3688887766555432 2345578899999975
No 323
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=35.35 E-value=1.3e+02 Score=24.97 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=21.2
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHH----H---hCCCcEEEEEcCCCh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVI----E---NFGVAVSERDVSMDR 160 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL----~---~~gV~y~ErDVs~d~ 160 (289)
-|+.|..+ +|+.|++....| + ..++.+-.++++.+.
T Consensus 64 ~~l~f~a~------~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~ 106 (173)
T PRK03147 64 VFLNFWGT------WCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE 106 (173)
T ss_pred EEEEEECC------cCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH
Confidence 34555555 999998754444 2 234666666665543
No 324
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=34.81 E-value=28 Score=34.82 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=41.9
Q ss_pred CCeEEechHHHHHHHHhCcHHHHh--ccCCCcccCCcccCCCCcee-----------EeCCCCCCcce
Q 041824 204 KGRYVGGAEEVLRIVEEGWFGELI--EGIPIRKLKGVCQGCADVRF-----------FPCFRCNGSCK 258 (289)
Q Consensus 204 ~G~~IGG~del~~L~E~G~L~~lL--~~~~~~~~~~~C~~Cgg~rf-----------vpC~~C~GS~K 258 (289)
+|..+-|.+++.++.+.|-.+.|| +.+........|..||...- -.|+.|++...
T Consensus 286 ~g~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~rc~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (403)
T TIGR03676 286 GGLAAYGEEEVRKALEMGAVDTLLISEDLRKIRVTFKCPNCGYEEEKTVKPEEGDKSEACPKCGSELE 353 (403)
T ss_pred CCcEEEcHHHHHHHHHhCCCcEEEEEccccceeEEEEcCCCCcceeeecccccccccccCcccCcccc
Confidence 377899999999999999999996 35544444568999987543 23888888844
No 325
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=34.79 E-value=28 Score=38.65 Aligned_cols=59 Identities=15% Similarity=0.295 Sum_probs=34.2
Q ss_pred CEEEECCeEEe------------chHHHHHHHHhCcHHHHhccC-----CCcccCCcccCCCCcee------------Ee
Q 041824 199 PRVFVKGRYVG------------GAEEVLRIVEEGWFGELIEGI-----PIRKLKGVCQGCADVRF------------FP 249 (289)
Q Consensus 199 PqIFI~G~~IG------------G~del~~L~E~G~L~~lL~~~-----~~~~~~~~C~~Cgg~rf------------vp 249 (289)
|.|+|+...|| =+|+++.|...=...+. .+. .-..+.+.|..|.|.++ ++
T Consensus 685 ~~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~-~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~ 763 (943)
T PRK00349 685 KVIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKA-RGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVP 763 (943)
T ss_pred ceEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccc-cCCCcccCCCCCCCCCCCcccccceEEEEeccCCCcccc
Confidence 77888876554 45666665532111110 111 11113578999998865 57
Q ss_pred CCCCCCcce
Q 041824 250 CFRCNGSCK 258 (289)
Q Consensus 250 C~~C~GS~K 258 (289)
|+.|+|.+-
T Consensus 764 C~~C~G~R~ 772 (943)
T PRK00349 764 CDVCKGKRY 772 (943)
T ss_pred CccccCccc
Confidence 999999863
No 326
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=34.45 E-value=66 Score=26.69 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=22.6
Q ss_pred CCHHH-HHHHHHHHhCCCcEEEEEcCC
Q 041824 133 TYEAC-KAAKSVIENFGVAVSERDVSM 158 (289)
Q Consensus 133 tC~~C-~~ak~iL~~~gV~y~ErDVs~ 158 (289)
.|..| .+++++|...||+...+-+..
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 78888 578999999999999888865
No 327
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=34.38 E-value=1.6e+02 Score=22.73 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHHHHH-------HhCCCcEEEEEcCC
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAKSVI-------ENFGVAVSERDVSM 158 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak~iL-------~~~gV~y~ErDVs~ 158 (289)
+.++||.-+.. +|+.|.....-| +..++.+-.+..+.
T Consensus 26 k~~vl~f~~~~----~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~ 69 (124)
T PF00578_consen 26 KPVVLFFWPTA----WCPFCQAELPELNELYKKYKDKGVQVIGISTDD 69 (124)
T ss_dssp SEEEEEEESTT----TSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSS
T ss_pred CcEEEEEeCcc----CccccccchhHHHHHhhhhccceEEeeeccccc
Confidence 45667666622 799996544333 33466666666643
No 328
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=33.54 E-value=33 Score=25.67 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=13.5
Q ss_pred EEECCeEEechHHHHHHH
Q 041824 201 VFVKGRYVGGAEEVLRIV 218 (289)
Q Consensus 201 IFI~G~~IGG~del~~L~ 218 (289)
||+||.+||=.++-.+|.
T Consensus 1 VFlNG~~iG~~~~p~~l~ 18 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEELV 18 (63)
T ss_dssp EEETTEEEEEESSHHHHH
T ss_pred CEECCEEEEEEcCHHHHH
Confidence 799999999876644433
No 329
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=33.49 E-value=87 Score=26.46 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=32.2
Q ss_pred CCCCCCCHHHHHHHHHHHhCC-----CcEEEEEcCCChhHHHHHHHHHccc
Q 041824 128 RGIRKTYEACKAAKSVIENFG-----VAVSERDVSMDRGFKEELRELMMRR 173 (289)
Q Consensus 128 rgvR~tC~~C~~ak~iL~~~g-----V~y~ErDVs~d~~~reEL~~llg~~ 173 (289)
.|.|-.|++|..+--+|..+- +++..+|... =|.++.+++|..
T Consensus 18 PG~~f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R---PR~~vi~llGE~ 65 (112)
T PF11287_consen 18 PGQRFYCPHCAAIEGLLASFPDLRERLDVRRVDFPR---PRQAVIALLGEA 65 (112)
T ss_pred CCceEECCchHHHHhHHhhChhhhhcccEEEeCCCC---chHHHHHHhChh
Confidence 467789999999999999874 4455555543 367888998874
No 330
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=33.07 E-value=27 Score=32.88 Aligned_cols=35 Identities=26% Similarity=0.886 Sum_probs=18.3
Q ss_pred CCcccCCC--------------CceeEeCCCCCCcceeeeccCCCCccccccCCccCcC
Q 041824 236 KGVCQGCA--------------DVRFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNEN 280 (289)
Q Consensus 236 ~~~C~~Cg--------------g~rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNEN 280 (289)
.+.|--|| |.||.-|..|+..-+. ...+|+.|.+.
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~----------~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF----------VRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE------------TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee----------cCCCCcCCCCC
Confidence 47899998 4699999999877443 13578888654
No 331
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=32.13 E-value=47 Score=32.41 Aligned_cols=13 Identities=23% Similarity=0.815 Sum_probs=8.6
Q ss_pred CceeEeCCCCCCc
Q 041824 244 DVRFFPCFRCNGS 256 (289)
Q Consensus 244 g~rfvpC~~C~GS 256 (289)
|.||+-|..|...
T Consensus 209 G~RyL~CslC~te 221 (309)
T PRK03564 209 GLRYLHCNLCESE 221 (309)
T ss_pred CceEEEcCCCCCc
Confidence 4577777777654
No 332
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=31.95 E-value=1e+02 Score=26.58 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=26.8
Q ss_pred CCcEEEEEecCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEcCC
Q 041824 117 ENKVVIYTTTLRGIRKTYEACKAAKSVIE----NFGVAVSERDVSM 158 (289)
Q Consensus 117 ~~kVVVYttSLrgvR~tC~~C~~ak~iL~----~~gV~y~ErDVs~ 158 (289)
+.+||.|..+ +|+.|++..-.|+ .+++.+.-++++.
T Consensus 51 ~~~lvnFWAs------WCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 51 DYALVFFYQS------TCPYCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred CCEEEEEECC------CChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 3458899999 9999998776665 5577776666654
No 333
>PRK04023 DNA polymerase II large subunit; Validated
Probab=31.66 E-value=51 Score=37.18 Aligned_cols=71 Identities=20% Similarity=0.457 Sum_probs=41.1
Q ss_pred EEECCeEEechHHHHHHHHh-CcHHHHhccCCCcccCCcccCCCCc-eeEeCCCCCCcceeeeccCCCCccccccCCccC
Q 041824 201 VFVKGRYVGGAEEVLRIVEE-GWFGELIEGIPIRKLKGVCQGCADV-RFFPCFRCNGSCKLVINMQPRGKTAALRCPDCN 278 (289)
Q Consensus 201 IFI~G~~IGG~del~~L~E~-G~L~~lL~~~~~~~~~~~C~~Cgg~-rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CN 278 (289)
+|==|.+=|.--.+.++.+. |.. ........|..||-. -+..|++|+.... ...+|+.|-
T Consensus 597 LFPiG~~GG~~R~i~~A~~~~g~~-------eVEVg~RfCpsCG~~t~~frCP~CG~~Te-----------~i~fCP~CG 658 (1121)
T PRK04023 597 LFPIGNAGGSTRDINKAAKYKGTI-------EVEIGRRKCPSCGKETFYRRCPFCGTHTE-----------PVYRCPRCG 658 (1121)
T ss_pred cccccccCcccccHHHHHhcCCce-------eecccCccCCCCCCcCCcccCCCCCCCCC-----------cceeCcccc
Confidence 44334443444455555542 222 112234689999965 4468999987611 156888886
Q ss_pred cCCc-ccCCCCC
Q 041824 279 ENGL-VLCPLCS 289 (289)
Q Consensus 279 ENGL-vrCp~C~ 289 (289)
...- -.||.|.
T Consensus 659 ~~~~~y~CPKCG 670 (1121)
T PRK04023 659 IEVEEDECEKCG 670 (1121)
T ss_pred CcCCCCcCCCCC
Confidence 5443 4688883
No 334
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=31.52 E-value=26 Score=29.68 Aligned_cols=45 Identities=18% Similarity=0.452 Sum_probs=29.5
Q ss_pred HhCcHHHHhccCCCcccCCcccCCCCceeEeCCCCCCcceeeeccCCCCccccccCCccCc
Q 041824 219 EEGWFGELIEGIPIRKLKGVCQGCADVRFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNE 279 (289)
Q Consensus 219 E~G~L~~lL~~~~~~~~~~~C~~Cgg~rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNE 279 (289)
....|+.+|+.+=. .||.|..|+..--.+..+ ++..+++|-+|..
T Consensus 78 ~~~~i~~~L~~fI~-------------~yVlC~~C~spdT~l~k~---~r~~~l~C~aCGa 122 (125)
T PF01873_consen 78 SSKQIQDLLDKFIK-------------EYVLCPECGSPDTELIKE---GRLIFLKCKACGA 122 (125)
T ss_dssp SCCHHHHHHHHHHC-------------HHSSCTSTSSSSEEEEEE---TTCCEEEETTTSC
T ss_pred CHHHHHHHHHHHHH-------------HEEEcCCCCCCccEEEEc---CCEEEEEecccCC
Confidence 34556666655432 379999999775444433 2456899999975
No 335
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=31.20 E-value=1.4e+02 Score=26.37 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHhCCCcEEEEEcCCCh
Q 041824 133 TYEACKAAKSVIENFGVAVSERDVSMDR 160 (289)
Q Consensus 133 tC~~C~~ak~iL~~~gV~y~ErDVs~d~ 160 (289)
--+..+++..+|+.+||+|+.+=++.|+
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~SaHR 37 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVSAHR 37 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEECccc
Confidence 7789999999999999999999888875
No 336
>PRK04011 peptide chain release factor 1; Provisional
Probab=30.86 E-value=34 Score=34.28 Aligned_cols=56 Identities=25% Similarity=0.421 Sum_probs=40.6
Q ss_pred CCeEEechHHHHHHHHhCcHHHHh--ccCCCcccCCcccCCCCcee-----------EeCCCCCCccee
Q 041824 204 KGRYVGGAEEVLRIVEEGWFGELI--EGIPIRKLKGVCQGCADVRF-----------FPCFRCNGSCKL 259 (289)
Q Consensus 204 ~G~~IGG~del~~L~E~G~L~~lL--~~~~~~~~~~~C~~Cgg~rf-----------vpC~~C~GS~K~ 259 (289)
+|..+-|.+++.++.+.|-.+.|| +.+.+......|..||-..- -.|+.|++...+
T Consensus 294 ~g~avyG~~~V~~Ale~GAVetLLV~d~l~~~r~~~~c~~c~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 362 (411)
T PRK04011 294 GGLAVYGEEEVRKALEMGAVDTLLISEDLRKDRVTYKCPNCGYEEEKTVKRREELPEKTCPKCGSELEI 362 (411)
T ss_pred CCcEEEcHHHHHHHHHcCCceEEEEeccccceeEEEEcCCCCcceeeecccccccccccCcccCccccc
Confidence 367899999999999999999996 34555444567888875432 257777776443
No 337
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=30.71 E-value=55 Score=39.01 Aligned_cols=51 Identities=20% Similarity=0.467 Sum_probs=32.8
Q ss_pred eEEechHHHHHHHHhCcHHHHhccCCCc-----ccCCcccCCCCcee---------EeCCCCCCcc
Q 041824 206 RYVGGAEEVLRIVEEGWFGELIEGIPIR-----KLKGVCQGCADVRF---------FPCFRCNGSC 257 (289)
Q Consensus 206 ~~IGG~del~~L~E~G~L~~lL~~~~~~-----~~~~~C~~Cgg~rf---------vpC~~C~GS~ 257 (289)
.|+|=+|++++|...=...+.. +.+.. ..++.|..|.|.+. ++|+.|+|.+
T Consensus 686 tY~g~fd~IR~lFA~~~~ak~~-g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkR 750 (1809)
T PRK00635 686 TYIKAFDDLRELFAEQPRSKRL-GLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKR 750 (1809)
T ss_pred eehhhhHHHHHHHhhChHHHHc-CCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcc
Confidence 4555678888776543333322 22221 13678999998874 5899999975
No 338
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=30.59 E-value=38 Score=28.12 Aligned_cols=30 Identities=20% Similarity=0.548 Sum_probs=21.3
Q ss_pred eeEeCCCCCCcceeeeccCCCCccccccCCccC
Q 041824 246 RFFPCFRCNGSCKLVINMQPRGKTAALRCPDCN 278 (289)
Q Consensus 246 rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CN 278 (289)
.||.|..|+-.--.+..+ ++..+++|-+|.
T Consensus 79 ~yVlC~~C~spdT~l~k~---~r~~~l~C~aCG 108 (110)
T smart00653 79 EYVLCPECGSPDTELIKE---NRLFFLKCEACG 108 (110)
T ss_pred hcEECCCCCCCCcEEEEe---CCeEEEEccccC
Confidence 389999999885443332 245689999995
No 339
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=30.43 E-value=31 Score=29.51 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=32.4
Q ss_pred HHHHHHHhCCCcEEEEEc-CCChhHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeE-EechHHHHH
Q 041824 139 AAKSVIENFGVAVSERDV-SMDRGFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRY-VGGAEEVLR 216 (289)
Q Consensus 139 ~ak~iL~~~gV~y~ErDV-s~d~~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~-IGG~del~~ 216 (289)
.++.+++..|++.++..- ..+.+.++++.+....- ..- .+..+|.++|||++ |.|+.....
T Consensus 133 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a--------------~~~---gv~G~Pt~vv~g~~~~~G~~~~~~ 195 (201)
T cd03024 133 VLVDLAEEAGLDAAEARAVLASDEYADEVRADEARA--------------RQL---GISGVPFFVFNGKYAVSGAQPPEV 195 (201)
T ss_pred HHHHHHHHcCCCHHHHHHHhcCcccchHHHHHHHHH--------------HHC---CCCcCCEEEECCeEeecCCCCHHH
Confidence 567788888887543221 12233444444432211 001 12344999999885 577755443
No 340
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=30.23 E-value=11 Score=28.94 Aligned_cols=35 Identities=20% Similarity=0.592 Sum_probs=18.0
Q ss_pred eCCCCCCcc-eeeeccCCCCccccccCCccCcCCcc
Q 041824 249 PCFRCNGSC-KLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 249 pC~~C~GS~-K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
-|..|+..- |.+.......+.+.+||+.|+..=||
T Consensus 6 TC~~C~~Rs~~~~sk~aY~~GvViv~C~gC~~~HlI 41 (66)
T PF05180_consen 6 TCNKCGTRSAKMFSKQAYHKGVVIVQCPGCKNRHLI 41 (66)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEEEE-TTS--EEES
T ss_pred EcCCCCCccceeeCHHHHhCCeEEEECCCCcceeee
Confidence 466666543 44443322223678899999876554
No 341
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=30.22 E-value=3.5e+02 Score=23.15 Aligned_cols=91 Identities=16% Similarity=0.167 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhhcCCCCCCCcEEEEEecCCCCC--CCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccc
Q 041824 99 AVIKSVLERFERICPPDGENKVVIYTTTLRGIR--KTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRR 176 (289)
Q Consensus 99 ~~~~~~l~~f~~~~pp~~~~kVVVYttSLrgvR--~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~ 176 (289)
.++....+.+.....+ +..+++|..|. |.- .....-.++-+.++..||.+.-+=|.. .-.++|.++......
T Consensus 92 ~AL~~a~~~l~~~~~~-~~~~~iillTD--G~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~--~~~~~L~~IA~~~~~- 165 (186)
T cd01480 92 CALKYATEQLLEGSHQ-KENKFLLVITD--GHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS--QNEEPLSRIACDGKS- 165 (186)
T ss_pred HHHHHHHHHHhccCCC-CCceEEEEEeC--CCcCCCcchhHHHHHHHHHHCCCEEEEEecCc--cchHHHHHHHcCCcc-
Confidence 4444444444432223 34556666665 221 123334455566889999988888865 234567777543210
Q ss_pred cCCCCCcchhhccCCCCCCCCCCEEEECCe
Q 041824 177 SSSSNNNEEEAESSVQPLPPVLPRVFVKGR 206 (289)
Q Consensus 177 ~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~ 206 (289)
.++-+.. ...+|++||+++
T Consensus 166 ---~~~~~~~--------~~l~~~~~~~~~ 184 (186)
T cd01480 166 ---ALYRENF--------AELLWSFFIDDE 184 (186)
T ss_pred ---hhhhcch--------hhhccccccccc
Confidence 0111111 135699999875
No 342
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=29.97 E-value=4e+02 Score=23.73 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=53.1
Q ss_pred HHHHHhhhcCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhC-CCcEEEEEcCCChhHHHHHHHHHcccccccCCCC
Q 041824 103 SVLERFERICPPDGENKVVIYTTTLRGIRKTYEACKAAKSVIENF-GVAVSERDVSMDRGFKEELRELMMRRRRRSSSSN 181 (289)
Q Consensus 103 ~~l~~f~~~~pp~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~-gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~ 181 (289)
..|++|-.+.. +...-++|-.+-++.. =++-..+++.|+.. |+.+..+++..+++..+.|. .
T Consensus 18 ~~l~~~l~~~~--~~~~~i~~IptAs~~~--~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~----~--------- 80 (212)
T cd03146 18 PAIDDLLLSLT--KARPKVLFVPTASGDR--DEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALL----E--------- 80 (212)
T ss_pred HHHHHHHHHhc--cCCCeEEEECCCCCCH--HHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHh----c---------
Confidence 34444444432 3333444544434322 26778899999999 99998888754332222222 1
Q ss_pred CcchhhccCCCCCCCCCCEEEECCeEEechHHHHHHHHhCcHHHHhccC
Q 041824 182 NNEEEAESSVQPLPPVLPRVFVKGRYVGGAEEVLRIVEEGWFGELIEGI 230 (289)
Q Consensus 182 ~~~~~g~~t~~~tv~~LPqIFI~G~~IGG~del~~L~E~G~L~~lL~~~ 230 (289)
. =.||+.| |....+.+..+.-.|.++|+..
T Consensus 81 -------------a---d~I~l~G---G~~~~~~~~l~~~~l~~~l~~~ 110 (212)
T cd03146 81 -------------A---DVIYVGG---GNTFNLLAQWREHGLDAILKAA 110 (212)
T ss_pred -------------C---CEEEECC---chHHHHHHHHHHcCHHHHHHHH
Confidence 1 3577877 6666666544444677777654
No 343
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=29.64 E-value=33 Score=24.04 Aligned_cols=11 Identities=27% Similarity=0.755 Sum_probs=7.9
Q ss_pred cccCCccCcCC
Q 041824 271 ALRCPDCNENG 281 (289)
Q Consensus 271 ~~rC~~CNENG 281 (289)
.+||++|.-.=
T Consensus 19 ~irC~~CG~rI 29 (44)
T smart00659 19 VVRCRECGYRI 29 (44)
T ss_pred ceECCCCCceE
Confidence 57888887543
No 344
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=29.49 E-value=45 Score=27.24 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=10.5
Q ss_pred ccch--hhhhcccCC
Q 041824 69 VINS--WELMSGLGE 81 (289)
Q Consensus 69 ~in~--welm~gl~~ 81 (289)
.||. |||+.+++-
T Consensus 65 LINd~DwEl~g~~~y 79 (96)
T PF09138_consen 65 LINDADWELLGEEDY 79 (96)
T ss_dssp EETTCEHHHHTCCCS
T ss_pred EEcCccceeecCcce
Confidence 4666 999999886
No 345
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=29.36 E-value=52 Score=22.37 Aligned_cols=31 Identities=19% Similarity=0.485 Sum_probs=20.0
Q ss_pred eCCCCCCcceeeec----cCCCCccccccCCccCc
Q 041824 249 PCFRCNGSCKLVIN----MQPRGKTAALRCPDCNE 279 (289)
Q Consensus 249 pC~~C~GS~K~~~~----~~~~g~~~~~rC~~CNE 279 (289)
+|+.|+...-++.. ....+...|-.|..|+.
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~ 36 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGH 36 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCC
Confidence 68888655444432 22345577899999974
No 346
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=28.91 E-value=1.1e+02 Score=25.59 Aligned_cols=37 Identities=11% Similarity=0.209 Sum_probs=27.4
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHH----HHHhC-CCcEEEEEcCCChh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKS----VIENF-GVAVSERDVSMDRG 161 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~----iL~~~-gV~y~ErDVs~d~~ 161 (289)
+|++|+-- .||+|..+.. +++.+ +|.++.+-+...+.
T Consensus 1 ~i~~~~D~------~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 1 TIEFFFDF------ICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEEBT------TBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred CEEEEEeC------CCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 47888888 9999976554 44556 89988888875544
No 347
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=28.80 E-value=4.1e+02 Score=23.41 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=54.7
Q ss_pred HHHHHhhhcCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcccccccCCCCC
Q 041824 103 SVLERFERICPPDGENKVVIYTTTLRGIRKTYEACKAAKSVIENFGVAVSERDVSMDRGFKEELRELMMRRRRRSSSSNN 182 (289)
Q Consensus 103 ~~l~~f~~~~pp~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~~~~~~~~s~~ 182 (289)
..+++|-.... ....+|++-.|... . ...+....++.|+..|+...++.+..+ ...+++.+.+..
T Consensus 16 ~~~~~~~~~~~-~~~~~i~~iptA~~-~--~~~~~~~~~~~~~~lG~~~~~~~~~~~-~~~~~~~~~l~~---------- 80 (210)
T cd03129 16 PILQDFLARAG-GAGARVLFIPTASG-D--RDEYGEEYRAAFERLGVEVVHLLLIDT-ANDPDVVARLLE---------- 80 (210)
T ss_pred HHHHHHHHHcC-CCCCeEEEEeCCCC-C--hHHHHHHHHHHHHHcCCceEEEeccCC-CCCHHHHHHHhh----------
Confidence 44555544432 23556666656522 2 457788999999999999887777532 111233333321
Q ss_pred cchhhccCCCCCCCCCCEEEECCeEEechHHHH-HHHHhCcHHHHhccCC
Q 041824 183 NEEEAESSVQPLPPVLPRVFVKGRYVGGAEEVL-RIVEEGWFGELIEGIP 231 (289)
Q Consensus 183 ~~~~g~~t~~~tv~~LPqIFI~G~~IGG~del~-~L~E~G~L~~lL~~~~ 231 (289)
. --|||.| |....+. .|.+.+-++.+++.+.
T Consensus 81 ------------a---d~I~~~G---G~~~~~~~~l~~t~~~~~i~~~~~ 112 (210)
T cd03129 81 ------------A---DGIFVGG---GNQLRLLSVLRETPLLDAILKRVA 112 (210)
T ss_pred ------------C---CEEEEcC---CcHHHHHHHHHhCChHHHHHHHHH
Confidence 1 4566655 4443333 4556667777776654
No 348
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.30 E-value=26 Score=32.17 Aligned_cols=42 Identities=19% Similarity=0.472 Sum_probs=25.8
Q ss_pred CCcccCCCCceeEeCCCCCCcceeeeccCCCCccccccCCccCcC
Q 041824 236 KGVCQGCADVRFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNEN 280 (289)
Q Consensus 236 ~~~C~~Cgg~rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNEN 280 (289)
...|-+||+.|-. .|+|..++-.....-.--..-||..||-.
T Consensus 17 ~k~C~~Cg~kr~f---~cSg~fRvNAq~K~LDvWlIYkC~~Cd~t 58 (203)
T COG4332 17 AKRCNSCGVKRAF---TCSGKFRVNAQGKVLDVWLIYKCTHCDYT 58 (203)
T ss_pred hhhCcccCCccee---eecCcEEEcCCCcEEEEEEEEEeeccCCc
Confidence 4689999998875 56777766333210000123589999853
No 349
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=28.23 E-value=43 Score=23.19 Aligned_cols=30 Identities=27% Similarity=0.656 Sum_probs=14.1
Q ss_pred eeEeCCCCCCccee--eeccCCCCccccccCCccC
Q 041824 246 RFFPCFRCNGSCKL--VINMQPRGKTAALRCPDCN 278 (289)
Q Consensus 246 rfvpC~~C~GS~K~--~~~~~~~g~~~~~rC~~CN 278 (289)
+-.||+.|.|+-+- +.++..+| .--|..|.
T Consensus 2 ~h~pCP~CGG~DrFri~~d~~~~G---~~~C~~C~ 33 (40)
T PF08273_consen 2 KHGPCPICGGKDRFRIFDDKDGRG---TWICRQCG 33 (40)
T ss_dssp EEE--TTTT-TTTEEEETT----S----EEETTTT
T ss_pred CCCCCCCCcCccccccCcCcccCC---CEECCCCC
Confidence 45799999998543 44332223 45677773
No 350
>PHA00626 hypothetical protein
Probab=27.93 E-value=41 Score=25.38 Aligned_cols=17 Identities=18% Similarity=0.340 Sum_probs=10.7
Q ss_pred ccCCCCceeEeCCCCCC
Q 041824 239 CQGCADVRFFPCFRCNG 255 (289)
Q Consensus 239 C~~Cgg~rfvpC~~C~G 255 (289)
|..||..-.+-|..|++
T Consensus 3 CP~CGS~~Ivrcg~cr~ 19 (59)
T PHA00626 3 CPKCGSGNIAKEKTMRG 19 (59)
T ss_pred CCCCCCceeeeeceecc
Confidence 66666666666666665
No 351
>PF04236 Transp_Tc5_C: Tc5 transposase C-terminal domain; InterPro: IPR007350 This domain corresponds to a C-terminal cysteine rich region that probably binds to a metal ion and could be DNA-binding. It is found in association with the DDE superfamily (IPR004875 from INTERPRO) and the Tc5 transposase family (IPR004906 from INTERPRO). More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.49 E-value=36 Score=25.75 Aligned_cols=18 Identities=33% Similarity=0.888 Sum_probs=13.5
Q ss_pred cccCCc--cCcCCcccCCCC
Q 041824 271 ALRCPD--CNENGLVLCPLC 288 (289)
Q Consensus 271 ~~rC~~--CNENGLvrCp~C 288 (289)
...|.. |++.+.|+|+-|
T Consensus 27 ~~~C~~~gC~~~s~I~C~~C 46 (63)
T PF04236_consen 27 AGDCDITGCNNTSFIRCAYC 46 (63)
T ss_pred cCcCCCCCCCCcCEEEcccc
Confidence 456776 888888888776
No 352
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=27.46 E-value=58 Score=28.11 Aligned_cols=35 Identities=23% Similarity=0.559 Sum_probs=24.3
Q ss_pred eeEeCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 246 RFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 246 rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
.||.|..|+-.--.+..+ ++..+++|-+|..-.-|
T Consensus 101 ~yVlC~~C~spdT~l~k~---~r~~~l~C~ACGa~~~V 135 (138)
T PRK03988 101 EYVICPECGSPDTKLIKE---GRIWVLKCEACGAETPV 135 (138)
T ss_pred hcEECCCCCCCCcEEEEc---CCeEEEEcccCCCCCcC
Confidence 389999998875444332 34568999999865543
No 353
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=27.00 E-value=87 Score=24.89 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=30.7
Q ss_pred HHHHHHHhCcHHHHhccCCCcccCCcccCCCCceeEeCCCCCCcceeeeccCCCCccccccCCccCcCCc
Q 041824 213 EVLRIVEEGWFGELIEGIPIRKLKGVCQGCADVRFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGL 282 (289)
Q Consensus 213 el~~L~E~G~L~~lL~~~~~~~~~~~C~~Cgg~rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGL 282 (289)
.+.++.+.-.|..+++..-.... =|..-..+|+.|....-++.-+...+ .-+|-.|++.|-
T Consensus 5 ~~~~i~~~~~i~~v~~~~~~l~~------~G~~~~~~CPfH~d~~pS~~i~~~k~---~~~Cf~Cg~~Gd 65 (97)
T PF01807_consen 5 FIEEIKSRIDIVDVIERYIKLKR------RGREYRCLCPFHDDKTPSFSINPDKN---RFKCFGCGKGGD 65 (97)
T ss_dssp HHHHHHHCS-HHHHHCCCS--EE------ETTEEEE--SSS--SS--EEEETTTT---EEEETTT--EE-
T ss_pred HHHHHHHhCCHHHHHHHhccccc------cCCeEEEECcCCCCCCCceEEECCCC---eEEECCCCCCCc
Confidence 45667777788888877622111 14555678999987754333221123 579999998874
No 354
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=26.63 E-value=31 Score=26.04 Aligned_cols=7 Identities=29% Similarity=0.980 Sum_probs=4.5
Q ss_pred CcccCCC
Q 041824 237 GVCQGCA 243 (289)
Q Consensus 237 ~~C~~Cg 243 (289)
..|..||
T Consensus 8 ~~CtSCg 14 (59)
T PRK14890 8 PKCTSCG 14 (59)
T ss_pred ccccCCC
Confidence 3577776
No 355
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=26.42 E-value=1.7e+02 Score=30.05 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHhC---CCcEEEEEcCCChhHHHHH-HHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEE---
Q 041824 131 RKTYEACKAAKSVIENF---GVAVSERDVSMDRGFKEEL-RELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFV--- 203 (289)
Q Consensus 131 R~tC~~C~~ak~iL~~~---gV~y~ErDVs~d~~~reEL-~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI--- 203 (289)
|..|||=.+|--+-+.+ =-+|...-|..+|+.-+++ +++.... .|+. ... |.|+=
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~--------------~w~~-~~s---piiwrel~ 62 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKN--------------GWSH-KRS---PIIWRELL 62 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhc--------------CCcc-CCC---CeeHHHHH
Confidence 34788877766554443 3348999999988765554 4444322 1222 234 89884
Q ss_pred ----CCeEEechHHHHHHHH
Q 041824 204 ----KGRYVGGAEEVLRIVE 219 (289)
Q Consensus 204 ----~G~~IGG~del~~L~E 219 (289)
.|..|||+.|+.++.+
T Consensus 63 ~rggkg~l~gg~~~f~e~~~ 82 (452)
T cd05295 63 DRGGKGLLLGGCNEFLEYAE 82 (452)
T ss_pred hcCCCceEecChHHHHHHHH
Confidence 7889999999988743
No 356
>smart00594 UAS UAS domain.
Probab=26.20 E-value=2.9e+02 Score=22.25 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=25.6
Q ss_pred CcEEEEEecCCCCCCCCHHHHH----------HHHHHHhCCCcEEEEEcCCChhHHHHHHHHHc
Q 041824 118 NKVVIYTTTLRGIRKTYEACKA----------AKSVIENFGVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~----------ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg 171 (289)
+.++||..+ .+|++|+. |+++|+. .+-+-..|+....+ .++...++
T Consensus 28 K~~lv~~~~-----~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg--~~l~~~~~ 83 (122)
T smart00594 28 RLLWLYLHS-----QDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEG--QRVSQFYK 83 (122)
T ss_pred CCEEEEEeC-----CCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhH--HHHHHhcC
Confidence 346666665 38999986 3345544 23344577765443 24554444
No 357
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=26.00 E-value=1.7e+02 Score=25.23 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=30.2
Q ss_pred HHhhhcCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHhCCCc
Q 041824 106 ERFERICPPDGENKVVIYTTTLRGIRKTYEACKAAKSVIENFGVA 150 (289)
Q Consensus 106 ~~f~~~~pp~~~~kVVVYttSLrgvR~tC~~C~~ak~iL~~~gV~ 150 (289)
+.+.+.-+......||+|-.+ .|..+..+-.+|+..|..
T Consensus 105 ~~l~~~~~~~~d~~IVvYC~~------G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 105 RGLERATGGDKDRPLVFYCLA------DCWMSWNAAKRALAYGYS 143 (162)
T ss_pred HHHHHhcCCCCCCEEEEEECC------CCHHHHHHHHHHHhcCCc
Confidence 344444444567889999998 888899999999999966
No 358
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=25.72 E-value=4.4e+02 Score=22.89 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhcCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHH
Q 041824 99 AVIKSVLERFERICPPDGENKVVIYTTTLRGIRKTYE--ACKAAKSVIENFGVAVSERDVSMDRGFKEELREL 169 (289)
Q Consensus 99 ~~~~~~l~~f~~~~pp~~~~kVVVYttSLrgvR~tC~--~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~l 169 (289)
.++...++.|... +....++|+|..++.. .+. .-..+.+.|++.||++..+=+..+....+++-+.
T Consensus 90 ~aL~~A~~~l~~~-~~~~~~~iiil~sd~~----~~~~~~~~~~~~~l~~~~I~v~~IgiG~~~~~L~~ia~~ 157 (183)
T cd01453 90 NGLEMALESLKHM-PSHGSREVLIIFSSLS----TCDPGNIYETIDKLKKENIRVSVIGLSAEMHICKEICKA 157 (183)
T ss_pred HHHHHHHHHHhcC-CccCceEEEEEEcCCC----cCChhhHHHHHHHHHHcCcEEEEEEechHHHHHHHHHHH
Confidence 4444555555533 2223456777777633 231 2346788899999999988887554433333333
No 359
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=25.55 E-value=1.5e+02 Score=24.90 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=23.6
Q ss_pred CCcEEEEEecCC--CCCCCCHHHHHHHHHHH----hC--CCcEEEEEcC
Q 041824 117 ENKVVIYTTTLR--GIRKTYEACKAAKSVIE----NF--GVAVSERDVS 157 (289)
Q Consensus 117 ~~kVVVYttSLr--gvR~tC~~C~~ak~iL~----~~--gV~y~ErDVs 157 (289)
.+.+.||.++-. --+.+||+|.+|.-+++ .. +..+.++.|.
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG 67 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVG 67 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE--
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcC
Confidence 455666665432 34579999999985554 32 4556677775
No 360
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=25.51 E-value=27 Score=33.00 Aligned_cols=19 Identities=47% Similarity=1.200 Sum_probs=14.6
Q ss_pred ccccCCccCc--------CCcccCCCC
Q 041824 270 AALRCPDCNE--------NGLVLCPLC 288 (289)
Q Consensus 270 ~~~rC~~CNE--------NGLvrCp~C 288 (289)
..++|.+||| |.|-|||.|
T Consensus 169 cRV~CgHC~~tFLfnt~tnaLArCPHC 195 (275)
T KOG4684|consen 169 CRVKCGHCNETFLFNTLTNALARCPHC 195 (275)
T ss_pred eEEEecCccceeehhhHHHHHhcCCcc
Confidence 3577888887 677888888
No 361
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.50 E-value=33 Score=28.48 Aligned_cols=10 Identities=20% Similarity=0.554 Sum_probs=6.9
Q ss_pred cccCCccCcC
Q 041824 271 ALRCPDCNEN 280 (289)
Q Consensus 271 ~~rC~~CNEN 280 (289)
+.+||.|...
T Consensus 88 ~~~CP~Cgs~ 97 (117)
T PRK00564 88 YGVCEKCHSK 97 (117)
T ss_pred CCcCcCCCCC
Confidence 5578888754
No 362
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=25.10 E-value=3.4e+02 Score=21.81 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=28.9
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHH-------HHhCCCcEEEEEcCCChhHHHHHHH
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSV-------IENFGVAVSERDVSMDRGFKEELRE 168 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~i-------L~~~gV~y~ErDVs~d~~~reEL~~ 168 (289)
.|||+.-+. .+|+.|....-. +...+|.+..+.+..+...++.+.+
T Consensus 30 ~~vv~f~~~----~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 30 PVVVNFWAS----AWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp EEEEEEEST----TTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred eEEEEEEcc----CCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence 355555551 179999855422 3446788888888877775544444
No 363
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=25.04 E-value=71 Score=27.42 Aligned_cols=35 Identities=23% Similarity=0.654 Sum_probs=23.6
Q ss_pred eeEeCCCCCCcceeeeccCCCCccccccCCccCcCCcc
Q 041824 246 RFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGLV 283 (289)
Q Consensus 246 rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGLv 283 (289)
.||.|..|+-.--.+..+ ++..+++|-+|..-.-|
T Consensus 96 ~yVlC~~C~sPdT~l~k~---~r~~~l~C~ACGa~~~v 130 (133)
T TIGR00311 96 KYVICRECNRPDTRIIKE---GRVSLLKCEACGAKAPL 130 (133)
T ss_pred heEECCCCCCCCcEEEEe---CCeEEEecccCCCCCcc
Confidence 489999999885333332 23457899999765443
No 364
>PTZ00102 disulphide isomerase; Provisional
Probab=24.83 E-value=1.3e+02 Score=29.44 Aligned_cols=35 Identities=11% Similarity=0.208 Sum_probs=23.6
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHhC--------CCcEEEEEcCCC
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIENF--------GVAVSERDVSMD 159 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~~--------gV~y~ErDVs~d 159 (289)
-+|.|..+ +|++|++....|+.. .|.+-.+|.+.+
T Consensus 378 vlv~f~a~------wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~ 420 (477)
T PTZ00102 378 VLLEIYAP------WCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN 420 (477)
T ss_pred EEEEEECC------CCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC
Confidence 35555556 999999988887653 244566777654
No 365
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=24.62 E-value=25 Score=38.79 Aligned_cols=42 Identities=29% Similarity=0.739 Sum_probs=0.0
Q ss_pred CCcccCCCCcee-EeCCCCCCcceeeeccCCCCccccccCCccCcC-CcccCCCC
Q 041824 236 KGVCQGCADVRF-FPCFRCNGSCKLVINMQPRGKTAALRCPDCNEN-GLVLCPLC 288 (289)
Q Consensus 236 ~~~C~~Cgg~rf-vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNEN-GLvrCp~C 288 (289)
...|..||-..| ..|+.|...... ..+|+.|+.. .--.||.|
T Consensus 655 ~r~Cp~Cg~~t~~~~Cp~CG~~T~~-----------~~~Cp~C~~~~~~~~C~~C 698 (900)
T PF03833_consen 655 RRRCPKCGKETFYNRCPECGSHTEP-----------VYVCPDCGIEVEEDECPKC 698 (900)
T ss_dssp -------------------------------------------------------
T ss_pred cccCcccCCcchhhcCcccCCcccc-----------ceeccccccccCccccccc
Confidence 467999997665 679999877332 4567777642 22366666
No 366
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.35 E-value=68 Score=26.52 Aligned_cols=14 Identities=36% Similarity=0.631 Sum_probs=10.6
Q ss_pred cccch--hhhhcccCC
Q 041824 68 EVINS--WELMSGLGE 81 (289)
Q Consensus 68 e~in~--welm~gl~~ 81 (289)
=.||. |||...++-
T Consensus 69 ~lINd~DWEllekedy 84 (101)
T KOG4146|consen 69 VLINDMDWELLEKEDY 84 (101)
T ss_pred EEEeccchhhhccccc
Confidence 45776 999888775
No 367
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=24.30 E-value=3e+02 Score=28.80 Aligned_cols=21 Identities=10% Similarity=0.185 Sum_probs=15.7
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHh
Q 041824 120 VVIYTTTLRGIRKTYEACKAAKSVIEN 146 (289)
Q Consensus 120 VVVYttSLrgvR~tC~~C~~ak~iL~~ 146 (289)
||-|..+ +|+.|++....|+.
T Consensus 60 vV~FWAT------WCppCk~emP~L~e 80 (521)
T PRK14018 60 LIKFWAS------WCPLCLSELGETEK 80 (521)
T ss_pred EEEEEcC------CCHHHHHHHHHHHH
Confidence 5556666 99999997766653
No 368
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=24.06 E-value=38 Score=25.57 Aligned_cols=18 Identities=39% Similarity=1.141 Sum_probs=14.4
Q ss_pred cccCCccCcCCcc-cCCCC
Q 041824 271 ALRCPDCNENGLV-LCPLC 288 (289)
Q Consensus 271 ~~rC~~CNENGLv-rCp~C 288 (289)
.++|+.|.+--|- .||.|
T Consensus 5 ~rkC~~cg~YTLke~Cp~C 23 (59)
T COG2260 5 IRKCPKCGRYTLKEKCPVC 23 (59)
T ss_pred hhcCcCCCceeecccCCCC
Confidence 4678888888887 88887
No 369
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=23.88 E-value=79 Score=29.85 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=28.0
Q ss_pred CCCcEEEEEecCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEcCC
Q 041824 116 GENKVVIYTTTLRGIRKTYEACKAAKSVIE----NFGVAVSERDVSM 158 (289)
Q Consensus 116 ~~~kVVVYttSLrgvR~tC~~C~~ak~iL~----~~gV~y~ErDVs~ 158 (289)
....++.|..+ .|++|++.--+|+ .+|+.+..+.++-
T Consensus 143 ~~~GL~fFy~s------~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG 183 (248)
T PRK13703 143 EHYGLMFFYRG------QDPIDGQLAQVINDFRDTYGLSVIPVSVDG 183 (248)
T ss_pred hcceEEEEECC------CCchhHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 45678999999 9999998666654 5788777776653
No 370
>PF09369 DUF1998: Domain of unknown function (DUF1998); InterPro: IPR018973 This entry represents a family of DEAD/DEAH-box-containing family of helicases. It includes Hrq1 from Saccharomyces, a putative RecQ helicase []. RecQ helicases are involved in maintaining genomic integrity.
Probab=23.53 E-value=20 Score=27.40 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=29.1
Q ss_pred CEEEECCeEEechHHHHHHHHhCcHHHHhccCC
Q 041824 199 PRVFVKGRYVGGAEEVLRIVEEGWFGELIEGIP 231 (289)
Q Consensus 199 PqIFI~G~~IGG~del~~L~E~G~L~~lL~~~~ 231 (289)
|.||+=+.+-||.--+.++.+...+.++|+.+-
T Consensus 36 ~~i~lyD~~~GG~G~~~~l~~~~~~~~ll~~A~ 68 (84)
T PF09369_consen 36 PRIFLYDTVPGGAGYAERLFERERFEELLRRAL 68 (84)
T ss_pred cEEEEEECCCCchhhHhhhcChhHHHHHHHHHH
Confidence 999999999999999999988888999998754
No 371
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=23.23 E-value=90 Score=21.07 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=17.6
Q ss_pred EeCCCCCCcceeeeccCCCCccccccCCcc
Q 041824 248 FPCFRCNGSCKLVINMQPRGKTAALRCPDC 277 (289)
Q Consensus 248 vpC~~C~GS~K~~~~~~~~g~~~~~rC~~C 277 (289)
|-|+.|+...-++.......+.-.-||.+|
T Consensus 6 v~CP~C~s~~~v~k~G~~~~G~qryrC~~C 35 (36)
T PF03811_consen 6 VHCPRCQSTEGVKKNGKSPSGHQRYRCKDC 35 (36)
T ss_pred eeCCCCCCCCcceeCCCCCCCCEeEecCcC
Confidence 679999888756554322111224577776
No 372
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=22.96 E-value=1.7e+02 Score=23.03 Aligned_cols=19 Identities=5% Similarity=0.135 Sum_probs=14.0
Q ss_pred CcEEEEEecCCCCCCCCHHHHHHH
Q 041824 118 NKVVIYTTTLRGIRKTYEACKAAK 141 (289)
Q Consensus 118 ~kVVVYttSLrgvR~tC~~C~~ak 141 (289)
+-|+||..+ .+|++|+...
T Consensus 18 K~llv~~~~-----~~c~~c~~~~ 36 (114)
T cd02958 18 KWLLVYLQS-----EDEFDSQVLN 36 (114)
T ss_pred ceEEEEEec-----CCcchHHHHH
Confidence 447777776 4999998754
No 373
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=22.81 E-value=67 Score=21.91 Aligned_cols=31 Identities=32% Similarity=0.684 Sum_probs=17.5
Q ss_pred eeEeCCCCCCcceeeecc-CCCCccccccCCccCc
Q 041824 246 RFFPCFRCNGSCKLVINM-QPRGKTAALRCPDCNE 279 (289)
Q Consensus 246 rfvpC~~C~GS~K~~~~~-~~~g~~~~~rC~~CNE 279 (289)
+-+||+.|.|+-+-...+ ...| .--|..|+.
T Consensus 2 ~~~pCP~CGG~DrFr~~d~~g~G---~~~C~~Cg~ 33 (37)
T smart00778 2 RHGPCPNCGGSDRFRFDDKDGRG---TWFCSVCGA 33 (37)
T ss_pred CccCCCCCCCccccccccCCCCc---CEEeCCCCC
Confidence 357899998874333332 2123 345666654
No 374
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=22.77 E-value=2.2e+02 Score=23.39 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=12.8
Q ss_pred CCHHHHH-------HHHHHHhCCCcEEEEEcC
Q 041824 133 TYEACKA-------AKSVIENFGVAVSERDVS 157 (289)
Q Consensus 133 tC~~C~~-------ak~iL~~~gV~y~ErDVs 157 (289)
.|+.|.. ..+-|...|+.+--+.++
T Consensus 42 ~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d 73 (154)
T PRK09437 42 MTPGCTVQACGLRDNMDELKKAGVVVLGISTD 73 (154)
T ss_pred CCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5777743 333344556655444443
No 375
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=22.29 E-value=45 Score=31.85 Aligned_cols=17 Identities=41% Similarity=1.103 Sum_probs=0.0
Q ss_pred ccCCccCc---------CCcccCCCC
Q 041824 272 LRCPDCNE---------NGLVLCPLC 288 (289)
Q Consensus 272 ~rC~~CNE---------NGLvrCp~C 288 (289)
++|.+|++ |.|.|||.|
T Consensus 158 v~CghC~~~Fl~~~~~~~tlARCPHC 183 (256)
T PF09788_consen 158 VICGHCSNTFLFNTLTSNTLARCPHC 183 (256)
T ss_pred EECCCCCCcEeccCCCCCccccCCCC
No 376
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=22.21 E-value=1.8e+02 Score=26.58 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhcCCCCCCCcEEEEEec-CCCCCCCCHHHHHHHHHHHhC------CCcEEEEEcCCChhHHHHHHHHHc
Q 041824 99 AVIKSVLERFERICPPDGENKVVIYTTT-LRGIRKTYEACKAAKSVIENF------GVAVSERDVSMDRGFKEELRELMM 171 (289)
Q Consensus 99 ~~~~~~l~~f~~~~pp~~~~kVVVYttS-LrgvR~tC~~C~~ak~iL~~~------gV~y~ErDVs~d~~~reEL~~llg 171 (289)
...++.|...++ +=.|.+|.+. +.. ..-+.=..++.+|+.+ +|.|+.+|...+++..++.....|
T Consensus 14 ~~T~~~L~~L~~------pV~i~~~~s~~l~~--~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~G 85 (271)
T PF09822_consen 14 DQTKKVLKSLDE------PVTITVYFSRELPP--ELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYG 85 (271)
T ss_pred HHHHHHHHhCCC------CEEEEEEECCCcch--hhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcC
Confidence 344556655443 3346666665 221 1346778999999987 799999999888877777666656
Q ss_pred c
Q 041824 172 R 172 (289)
Q Consensus 172 ~ 172 (289)
.
T Consensus 86 i 86 (271)
T PF09822_consen 86 I 86 (271)
T ss_pred C
Confidence 4
No 377
>PRK04023 DNA polymerase II large subunit; Validated
Probab=22.19 E-value=58 Score=36.77 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=9.2
Q ss_pred HHHHHHHhCCCcEE
Q 041824 139 AAKSVIENFGVAVS 152 (289)
Q Consensus 139 ~ak~iL~~~gV~y~ 152 (289)
.+|++|+.++|+..
T Consensus 506 ~~k~~LE~L~v~H~ 519 (1121)
T PRK04023 506 GVKRILEKLGVPHR 519 (1121)
T ss_pred HHHHHHHHhCCceE
Confidence 56667777776654
No 378
>KOG2767 consensus Translation initiation factor 5 (eIF-5) [Translation, ribosomal structure and biogenesis]
Probab=22.02 E-value=31 Score=34.57 Aligned_cols=59 Identities=25% Similarity=0.548 Sum_probs=40.3
Q ss_pred CCeEEechHHHHHHHHhCcHHHHhccCCCcccCCcccCCCCceeEeCCCCCCcc-eeeeccCCCCccccccCCccCcCCc
Q 041824 204 KGRYVGGAEEVLRIVEEGWFGELIEGIPIRKLKGVCQGCADVRFFPCFRCNGSC-KLVINMQPRGKTAALRCPDCNENGL 282 (289)
Q Consensus 204 ~G~~IGG~del~~L~E~G~L~~lL~~~~~~~~~~~C~~Cgg~rfvpC~~C~GS~-K~~~~~~~~g~~~~~rC~~CNENGL 282 (289)
+|+||-. -.|+.++|+.||.++=+ +||.|..|.-.- -+++.. . ..+.+.|-+|---|.
T Consensus 71 n~ryiVN-----G~Hd~~KLqdlLdgFIk-------------KFVlC~~C~NPETel~itk-~--q~i~~~CkACG~r~~ 129 (400)
T KOG2767|consen 71 NGRYIVN-----GAHEASKLQDLLDGFIK-------------KFVLCPSCENPETELIITK-K--QTISLKCKACGFRSD 129 (400)
T ss_pred CCeeeec-----ccccHHHHHHHHHHHHH-------------HheeCcCCCCCceeEEecc-c--chhhhHHHHcCCccc
Confidence 6777632 34777889999988754 589999998874 444442 1 235688999977665
Q ss_pred c
Q 041824 283 V 283 (289)
Q Consensus 283 v 283 (289)
+
T Consensus 130 ~ 130 (400)
T KOG2767|consen 130 M 130 (400)
T ss_pred c
Confidence 5
No 379
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=21.84 E-value=1.4e+02 Score=24.88 Aligned_cols=35 Identities=6% Similarity=0.042 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHHcc
Q 041824 138 KAAKSVIENFGVAVSERDVSMDRGFKEELRELMMR 172 (289)
Q Consensus 138 ~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~llg~ 172 (289)
+++.++|+.++|+|+.+.......-.+|+.+.+|.
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~~t~~e~a~~~~~ 36 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPESTRTAALAAEALGC 36 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCCCcchHHHHHHHcCC
Confidence 47899999999999988887533345677776664
No 380
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=21.11 E-value=6.1e+02 Score=22.76 Aligned_cols=67 Identities=9% Similarity=0.053 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhhcCCCC-CCCcEEEEEecCCCCCCCC--HHHHHHHHHHHhCCCcEEEEEcCCChhHHHHHHHHH
Q 041824 99 AVIKSVLERFERICPPD-GENKVVIYTTTLRGIRKTY--EACKAAKSVIENFGVAVSERDVSMDRGFKEELRELM 170 (289)
Q Consensus 99 ~~~~~~l~~f~~~~pp~-~~~kVVVYttSLrgvR~tC--~~C~~ak~iL~~~gV~y~ErDVs~d~~~reEL~~ll 170 (289)
.++.-.+..|..+ +.. ...+||||..|.. .| ..-..+-+-|+..||+++.+-+-...+..+.|+.+.
T Consensus 89 ~AL~~A~~~L~~~-~~~~~~~rivi~v~S~~----~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~ 158 (187)
T cd01452 89 TGIQIAQLALKHR-QNKNQKQRIVAFVGSPI----EEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFI 158 (187)
T ss_pred HHHHHHHHHHhcC-CCcCCcceEEEEEecCC----cCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHH
Confidence 4555555566544 333 3458888888854 33 344456677788999999988876544455555554
No 381
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=21.04 E-value=50 Score=31.18 Aligned_cols=28 Identities=11% Similarity=0.148 Sum_probs=23.7
Q ss_pred CCcccCCCCceeEeCCCCCCcceeeecc
Q 041824 236 KGVCQGCADVRFFPCFRCNGSCKLVINM 263 (289)
Q Consensus 236 ~~~C~~Cgg~rfvpC~~C~GS~K~~~~~ 263 (289)
...|..-.|..+++|+.|.|+-|+..+.
T Consensus 27 ~~py~e~~g~~~vtCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 27 SFPYVEFTGRDSVTCPTCQGTGRIPREQ 54 (238)
T ss_pred cCccccccCCCCCcCCCCcCCccCCccc
Confidence 4578888899999999999999887653
No 382
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=21.02 E-value=46 Score=25.12 Aligned_cols=11 Identities=45% Similarity=0.927 Sum_probs=8.6
Q ss_pred CCccccccCCc
Q 041824 1 MGCASSNLLNQ 11 (289)
Q Consensus 1 ~~~~~~~~~~~ 11 (289)
|||+.|.+=+.
T Consensus 1 MGC~~SK~d~e 11 (60)
T PF04783_consen 1 MGCSQSKLDDE 11 (60)
T ss_pred CCCCcccccCc
Confidence 99999996533
No 383
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=20.97 E-value=45 Score=32.64 Aligned_cols=30 Identities=20% Similarity=0.579 Sum_probs=23.3
Q ss_pred CCcccCCcccCCCC---------ceeEeCCCCCCcceee
Q 041824 231 PIRKLKGVCQGCAD---------VRFFPCFRCNGSCKLV 260 (289)
Q Consensus 231 ~~~~~~~~C~~Cgg---------~rfvpC~~C~GS~K~~ 260 (289)
........|..||. .+++.|.+|.|-+|.+
T Consensus 15 ~~~~~Nk~CaDCga~~P~W~S~nlGvfiCi~CagvHRsL 53 (319)
T COG5347 15 KSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSL 53 (319)
T ss_pred hhccccCccccCCCCCCceEecccCeEEEeecchhhhcc
Confidence 33334578999994 5789999999998875
No 384
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=20.88 E-value=67 Score=26.07 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=12.3
Q ss_pred CEEEECCeEEechH
Q 041824 199 PRVFVKGRYVGGAE 212 (289)
Q Consensus 199 PqIFI~G~~IGG~d 212 (289)
=+|||||.+||-+.
T Consensus 65 ~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 65 ASVWVNGWFLGSYW 78 (111)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEEECCEEeeeec
Confidence 58999999999864
No 385
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=20.62 E-value=2.1e+02 Score=22.71 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=13.9
Q ss_pred CCHHHHHH-------HHHHHhCCCcEEEEEcC
Q 041824 133 TYEACKAA-------KSVIENFGVAVSERDVS 157 (289)
Q Consensus 133 tC~~C~~a-------k~iL~~~gV~y~ErDVs 157 (289)
+|+.|.+. .+-|+..++.+--+.++
T Consensus 35 ~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d 66 (140)
T cd03017 35 DTPGCTKEACDFRDLYEEFKALGAVVIGVSPD 66 (140)
T ss_pred CCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 78888642 23344456665555443
No 386
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=20.57 E-value=92 Score=28.24 Aligned_cols=32 Identities=19% Similarity=0.524 Sum_probs=20.2
Q ss_pred eEeCCCCCCcceeeeccCCCCccccccCCccCcCC
Q 041824 247 FFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENG 281 (289)
Q Consensus 247 fvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENG 281 (289)
||.|..|+-.--.+..+ ++..+++|-+|..-.
T Consensus 98 yV~C~~C~~pdT~l~k~---~~~~~l~C~aCGa~~ 129 (201)
T PRK12336 98 YVICSECGLPDTRLVKE---DRVLMLRCDACGAHR 129 (201)
T ss_pred eEECCCCCCCCcEEEEc---CCeEEEEcccCCCCc
Confidence 78888888774333322 235578888886544
No 387
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=20.51 E-value=49 Score=24.97 Aligned_cols=27 Identities=19% Similarity=0.528 Sum_probs=13.3
Q ss_pred EeCCCCCCcceeeeccCCCCccccccCCccCc
Q 041824 248 FPCFRCNGSCKLVINMQPRGKTAALRCPDCNE 279 (289)
Q Consensus 248 vpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNE 279 (289)
|-|+.|..---+|..-. ..++|..|..
T Consensus 12 VkCp~C~n~q~vFsha~-----t~V~C~~Cg~ 38 (59)
T PRK00415 12 VKCPDCGNEQVVFSHAS-----TVVRCLVCGK 38 (59)
T ss_pred EECCCCCCeEEEEecCC-----cEEECcccCC
Confidence 45555555444443321 2566666653
No 388
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=20.33 E-value=1.3e+02 Score=27.53 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=40.9
Q ss_pred hHHHHHHHHHcccccccCCCCCcchhhccCCCCCCCCCCEEEECCeEEechHHHHHHHHhCcHHHHhccCCC
Q 041824 161 GFKEELRELMMRRRRRSSSSNNNEEEAESSVQPLPPVLPRVFVKGRYVGGAEEVLRIVEEGWFGELIEGIPI 232 (289)
Q Consensus 161 ~~reEL~~llg~~~~~~~~s~~~~~~g~~t~~~tv~~LPqIFI~G~~IGG~del~~L~E~G~L~~lL~~~~~ 232 (289)
.+-+.|++.+... ...+..+|++-.+|+.| .+..|+++.++|+++.+-+-.|.
T Consensus 124 ~YN~~M~~~Lp~~------------------gi~v~ei~R~~~~g~~I-SAS~VR~~l~~~~~~~i~~lVP~ 176 (182)
T PF08218_consen 124 IYNEAMKEILPPY------------------GIEVVEIPRKEINGEPI-SASRVRKLLKEGDFEEIKKLVPE 176 (182)
T ss_pred HHHHHHHHhcccc------------------CCEEEEEecccCCCcEE-cHHHHHHHHHcCCHHHHHHhCCH
Confidence 4667777777643 13456779999999877 78999999999999888776664
No 389
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=20.28 E-value=1e+02 Score=23.70 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=15.4
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHh
Q 041824 119 KVVIYTTTLRGIRKTYEACKAAKSVIEN 146 (289)
Q Consensus 119 kVVVYttSLrgvR~tC~~C~~ak~iL~~ 146 (289)
-||.|..+ +|+.|++....|+.
T Consensus 24 vvl~F~~~------wC~~C~~~~p~l~~ 45 (114)
T cd02967 24 TLLFFLSP------TCPVCKKLLPVIRS 45 (114)
T ss_pred EEEEEECC------CCcchHhHhHHHHH
Confidence 35556666 99999987666654
No 390
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.28 E-value=69 Score=32.81 Aligned_cols=37 Identities=22% Similarity=0.575 Sum_probs=26.3
Q ss_pred cCCcccCCC-------CceeEeCCCCCCcceeeeccCCCCccccccCCccCcCCc
Q 041824 235 LKGVCQGCA-------DVRFFPCFRCNGSCKLVINMQPRGKTAALRCPDCNENGL 282 (289)
Q Consensus 235 ~~~~C~~Cg-------g~rfvpC~~C~GS~K~~~~~~~~g~~~~~rC~~CNENGL 282 (289)
....|..|. ..+.+.|..|+-+.+. ..+||.|...-|
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~-----------~~~Cp~C~s~~l 264 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPI-----------PKTCPQCGSEDL 264 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCC-----------CCCCCCCCCCee
Confidence 356899998 4456789999866433 468999976544
No 391
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=20.19 E-value=63 Score=30.11 Aligned_cols=37 Identities=19% Similarity=0.437 Sum_probs=23.4
Q ss_pred HHHHhccCCCcccCCcccCCCCc---eeEeCCCCCCccee
Q 041824 223 FGELIEGIPIRKLKGVCQGCADV---RFFPCFRCNGSCKL 259 (289)
Q Consensus 223 L~~lL~~~~~~~~~~~C~~Cgg~---rfvpC~~C~GS~K~ 259 (289)
++++++..-..++...|..||-. -+..|+.|.+=.-+
T Consensus 341 ~~~~~~~~~~~~p~~~c~~cg~~~~~~~~~c~~c~~~~~~ 380 (389)
T PRK11788 341 LRDLVGEQLKRKPRYRCRNCGFTARTLYWHCPSCKAWETI 380 (389)
T ss_pred HHHHHHHHHhCCCCEECCCCCCCCccceeECcCCCCccCc
Confidence 44455443344556789999954 46788888765433
No 392
>PRK00420 hypothetical protein; Validated
Probab=20.10 E-value=62 Score=27.19 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=7.6
Q ss_pred cccCCccCcC
Q 041824 271 ALRCPDCNEN 280 (289)
Q Consensus 271 ~~rC~~CNEN 280 (289)
...||.|.+.
T Consensus 40 ~~~Cp~Cg~~ 49 (112)
T PRK00420 40 EVVCPVHGKV 49 (112)
T ss_pred ceECCCCCCe
Confidence 5788888874
Done!