BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041825
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CC1|A Chain A, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
pdb|3CC1|B Chain B, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
Length = 433
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 128/361 (35%), Positives = 181/361 (50%), Gaps = 25/361 (6%)
Query: 33 AALPPRGWNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDS 92
A PP GWNS+D + ++E+E L +A+ A L +G+EY+VVD WY + +
Sbjct: 9 ALTPPXGWNSWDCYGASVTEEEVLGNAEYXANHLKKYGWEYIVVDIQWYEPTANSSAYNP 68
Query: 93 EGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTL 152
DE+GR++P R+PS+K G GF ++ +HD+GLKFGIH+ +GI QAV N+
Sbjct: 69 FAPLCXDEYGRLLPATNRFPSAKNGAGFKPLSDAIHDLGLKFGIHIXRGIPRQAVYENSP 128
Query: 153 IYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQYADW 212
+ K A++IA C W + TK GA +++ SL + YA W
Sbjct: 129 VLGSTK-----------TAREIAHTNSICPWNTDXYGVDPTKEGA-QSYYNSLFELYAQW 176
Query: 213 GVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQ--NRPIIYSLSPGTSATPAMAQKINGLAN 270
GVDFVK D L + + + + + Q RP + SLSPG A A AN
Sbjct: 177 GVDFVKVDDIAASRLYDTHLEEIKXIQRAIQACGRPXVLSLSPG-PAPIKYAHHFKTNAN 235
Query: 271 MYRVTGDDWDSWPDVAAHFSVARDFAAANMTGALGLKGKSWPDLDMLPLGWLTDANSTQG 330
+R+T D WD W + F + TG WPD LPLG + S G
Sbjct: 236 XWRITDDFWDDWSLLYQXFERCEVWEKHIGTG-------HWPDCGXLPLGHI-GIRSVDG 287
Query: 331 PY--RACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTYGLITNPTLLEIDHHSSNN 388
P R + T+DEQ T LWA+ SPL FGG++R D+ T L+TN +L I+ S N
Sbjct: 288 PGGDRWTRFTKDEQLTXXNLWAICHSPLXFGGELRDNDEWTLSLLTNEGILSINQKSVLN 347
Query: 389 K 389
+
Sbjct: 348 R 348
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
Mortierella Vinacea
Length = 397
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 152/375 (40%), Gaps = 103/375 (27%)
Query: 33 AALPPRGWNSYDAFCWIISEQEFLESADIVAKRLLPH-GYEYVVVDYLWYRKKVKGAHID 91
A P GWN+++ + + EQ L++A +A L GY YV++D W + + + +
Sbjct: 6 AITPQMGWNTWNKYGCNVDEQLILDAAKAIASSGLKDLGYNYVIIDDCWQKNERESSKT- 64
Query: 92 SEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANT 151
++ DP ++P +G + +H++GLK GI+ G T + +
Sbjct: 65 ------------LLADPTKFP-----RGIKPLVDDIHNLGLKAGIYSSAGTLTCGGHIAS 107
Query: 152 LIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQYAD 211
L Y +DI K +A
Sbjct: 108 LGY-----------------EDID------------------------------AKTWAK 120
Query: 212 WGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQN------RPIIYSLSP-GTSATPAMAQK 264
WG+D++K+D + G + + +K N RP++YSL G A
Sbjct: 121 WGIDYLKYDNCYNQG-QSGTPKLSYDRYKAMGNALNKTGRPMLYSLCNWGEDGPWNFAST 179
Query: 265 INGLANMYRVTGDDWDSW--PDVAA----HFSVARDFAAA-----NMTGALGLKGKS--W 311
I +N +R++GD +D++ PD A + V F + N A+ K +S W
Sbjct: 180 I---SNSWRISGDVYDNFNRPDPACPCTTYDCVLAGFRCSVMNIINKAVAVSQKARSGGW 236
Query: 312 PDLDMLPLGWLTDANSTQGPYRACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTYG 371
DLDML +G + Q+E + T+WA KSPL+ G DV + +TT
Sbjct: 237 NDLDMLEVG-------------NGGMNQEEYRVHYTIWAALKSPLILGNDVTNITNTTKE 283
Query: 372 LITNPTLLEIDHHSS 386
+I N ++ ++ SS
Sbjct: 284 IIMNKEVIAVNQDSS 298
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 88/352 (25%), Positives = 133/352 (37%), Gaps = 89/352 (25%)
Query: 36 PPRGWNSYDAFCWIISEQEFLESAD-IVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEG 94
P GWNS++ F I+EQ E+AD +V L GY+YV +D W
Sbjct: 9 PQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSR--------- 59
Query: 95 IDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIY 154
D G VP+ + +PS G +A VH GLK GI
Sbjct: 60 ----DSQGNFVPNRQTFPS-----GIKALADYVHAKGLKLGI------------------ 92
Query: 155 DYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQYADWGV 214
Y +AG Q K + H V K +A WGV
Sbjct: 93 -------YSDAGSQ------TCSNKMPGSLDHEEQDV---------------KTFASWGV 124
Query: 215 DFVKHD-CAFGDDLDEGEIAVVSEVFKGQQNRPIIYSLSPGTSATPAMAQKINGLANMYR 273
D++K+D C +S K + I +SL PA + N +R
Sbjct: 125 DYLKYDNCNDAGRSVMERYTRMSNAMK-TYGKNIFFSLCEWGKENPATW--AGRMGNSWR 181
Query: 274 VTGDDWDSWPDVAAHFSVARDFAAANMTGALGLKGKSWPDLDMLPLGWLTDANSTQGPYR 333
TGD D+W + + +AA G W D DML +G
Sbjct: 182 TTGDIADNWGSMTSRADENDQWAAYAGPGG-------WNDPDMLEVG------------- 221
Query: 334 ACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTYGLITNPTLLEIDHHS 385
+++ E ++ ++WA+AK+PL+ G DVR + T +++N ++ ++ S
Sbjct: 222 NGGMSEAEYRSHFSIWALAKAPLLIGCDVRSMSQQTKNILSNSEVIAVNQDS 273
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
Reesei Complexed With Beta-D-Galactose
Length = 417
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 144/383 (37%), Gaps = 111/383 (28%)
Query: 35 LPPRGWNSYDAFCWIISEQEFLESAD-IVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSE 93
+P GWNS++A+ I E +FL +A+ IV+ LL GY YV +D W +K +D
Sbjct: 11 VPSLGWNSWNAYHCDIDESKFLSAAELIVSSGLLDAGYNYVNIDDCW---SMKDGRVD-- 65
Query: 94 GIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLI 153
G + P+ R+P G +AKKVH +GLK GI+ G +T A +L
Sbjct: 66 --------GHIAPNATRFP-----DGIDGLAKKVHALGLKLGIYSTAGTATCAGYPASLG 112
Query: 154 YDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQYADWG 213
Y +D+ + +ADWG
Sbjct: 113 Y-----------------EDVDAAD------------------------------FADWG 125
Query: 214 VDFVKHD-CAFGDDLDEGEIAVVSEVFKGQQNRPIIYSLSPGTSATP------------- 259
VD++K+D C D + +A + K N +L P T A P
Sbjct: 126 VDYLKYDNCNVPSDWQDEYVACNPDFVKTGPNGTCTTALDP-TLAPPGYDWSTSKSAERF 184
Query: 260 -----AMAQK---------INGLANMY---RVTGDDWDSWPDVAAHFSVARDFAAANMTG 302
A+A++ I G A+++ TG W D++ ++ N
Sbjct: 185 GAMRNALAKQSHEIVLSMCIWGQADVFSWGNSTGISWRMSDDISPNWGSVTRILNLNSFK 244
Query: 303 ALGLKGKSWPDLDMLPLGWLTDANSTQGPYRACKLTQDEQKTQITLWAMAKSPLMFGGDV 362
+ D DML +G LT E +T LWA KSPL+ G D+
Sbjct: 245 LNSVDFWGHNDADMLEVG-------------NGNLTAAETRTHFALWAAMKSPLLIGTDL 291
Query: 363 RKLDDTTYGLITNPTLLEIDHHS 385
+L L+ N LL + S
Sbjct: 292 AQLSQNNINLLKNKHLLAFNQDS 314
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
Length = 405
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 143/375 (38%), Gaps = 105/375 (28%)
Query: 29 ETEHAALPPRGWNSYDAF-CWI---------ISEQEFLESADIVAK---RLLPHGYEYVV 75
E A PP GW +++ F C + ISE F+E AD +A+ R L GY+Y+
Sbjct: 2 ENGLARTPPMGWLAWERFRCNVNCREDPRQCISEMLFMEMADRIAEDGWREL--GYKYIN 59
Query: 76 VDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFG 135
+D W K+ D GR+VPDPER+P +G +A VH GLK G
Sbjct: 60 IDDCWAAKQR-------------DAEGRLVPDPERFP-----RGIKALADYVHARGLKLG 101
Query: 136 IHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKL 195
I Y + GR C P
Sbjct: 102 I-------------------------YGDLGR-----------LTCGGYP---------- 115
Query: 196 GAGKAFLRSLHKQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQNRPIIYSLS-PG 254
G + + +A+WGVD +K D + ++ + RPI+YS S P
Sbjct: 116 GTTLDRVEQDAQTFAEWGVDMLKLDGCYSSGKEQAQGYPQMARALNATGRPIVYSCSWPA 175
Query: 255 TSATPAMAQKIN-----GLANMYRVTGDDWDSWPDVAAHFSVARDFAAANMTGALGLKGK 309
+ K+N + N++R D DSW V + D+ N G
Sbjct: 176 YQG--GLPPKVNYTLLGEICNLWRNYDDIQDSWDSVLSIV----DWFFTNQDVLQPFAGP 229
Query: 310 S-WPDLDMLPLGWLTDANSTQGPYRACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDT 368
W D DML +G L+ ++ ++Q+ LW + +PL+ D+R + +
Sbjct: 230 GHWNDPDMLIIGNF-------------GLSYEQSRSQMALWTIMAAPLLMSTDLRTISPS 276
Query: 369 TYGLITNPTLLEIDH 383
++ N +++I+
Sbjct: 277 AKKILQNRLMIQINQ 291
>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LX9|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
Length = 404
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 88/372 (23%), Positives = 138/372 (37%), Gaps = 108/372 (29%)
Query: 33 AALPPRGWNSYDAFCW----------IISEQEFLESADI-VAKRLLPHGYEYVVVDYLWY 81
A P GW ++ F ISE+ F+E A++ V++ GYEY+ +D W
Sbjct: 6 ARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWM 65
Query: 82 RKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKG 141
DSEG R+ DP+R+P G ++A VH GLK GI+ G
Sbjct: 66 -----APQRDSEG--------RLQADPQRFP-----HGIRQLANYVHSKGLKLGIYADVG 107
Query: 142 ISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAF 201
K CA P F +
Sbjct: 108 ------------------------------------NKTCAGFPGSFGYYDID------- 124
Query: 202 LRSLHKQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFK------GQQNRPIIYSLSPGT 255
+ +ADWGVD +K D + D L+ +++ +K + R I+YS S
Sbjct: 125 ----AQTFADWGVDLLKFDGCYCDSLEN-----LADGYKHMSLALNRTGRSIVYSCSWPA 175
Query: 256 SATPAMA---QKINGLANMYRVTGDDWDSWPDVAAHFSVARDFAAANMTGALGLKGKS-W 311
P +I N +R D DSW + + D+ + N + + G W
Sbjct: 176 YMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSIL----DWTSFNQERIVDVAGPGGW 231
Query: 312 PDLDMLPLGWLTDANSTQGPYRACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTYG 371
D DML +G L+ ++Q TQ+ LWA+ +PL D+R +
Sbjct: 232 NDPDMLVIG-------------NFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKA 278
Query: 372 LITNPTLLEIDH 383
L+ + ++ I+
Sbjct: 279 LLQDKDVIAINQ 290
>pdb|1R46|A Chain A, Structure Of Human Alpha-galactosidase
pdb|1R46|B Chain B, Structure Of Human Alpha-galactosidase
pdb|1R47|A Chain A, Structure Of Human Alpha-Galactosidase
pdb|1R47|B Chain B, Structure Of Human Alpha-Galactosidase
pdb|3GXN|A Chain A, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXN|B Chain B, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXP|A Chain A, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXP|B Chain B, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXT|A Chain A, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3GXT|B Chain B, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3HG2|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG2|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG4|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG4|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG5|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3HG5|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3S5Y|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Y|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 398
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 137/372 (36%), Gaps = 108/372 (29%)
Query: 33 AALPPRGWNSYDAFCW----------IISEQEFLESADI-VAKRLLPHGYEYVVVDYLWY 81
A P GW ++ F ISE+ F+E A++ V++ GYEY+ +D W
Sbjct: 6 ARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWM 65
Query: 82 RKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKG 141
DSEG R+ DP+R+P G ++A VH GLK GI+ G
Sbjct: 66 -----APQRDSEG--------RLQADPQRFP-----HGIRQLANYVHSKGLKLGIYADVG 107
Query: 142 ISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAF 201
K CA P F +
Sbjct: 108 ------------------------------------NKTCAGFPGSFGYYDID------- 124
Query: 202 LRSLHKQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFK------GQQNRPIIYSLSPGT 255
+ +ADWGVD +K D + D L+ +++ +K + R I+YS
Sbjct: 125 ----AQTFADWGVDLLKFDGCYCDSLEN-----LADGYKHMSLALNRTGRSIVYSCEWPL 175
Query: 256 SATPAMA---QKINGLANMYRVTGDDWDSWPDVAAHFSVARDFAAANMTGALGLKGKS-W 311
P +I N +R D DSW + + D+ + N + + G W
Sbjct: 176 YMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSIL----DWTSFNQERIVDVAGPGGW 231
Query: 312 PDLDMLPLGWLTDANSTQGPYRACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTYG 371
D DML +G L+ ++Q TQ+ LWA+ +PL D+R +
Sbjct: 232 NDPDMLVIG-------------NFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKA 278
Query: 372 LITNPTLLEIDH 383
L+ + ++ I+
Sbjct: 279 LLQDKDVIAINQ 290
>pdb|3LRK|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae
pdb|3LRL|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae With Melibiose
Length = 479
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 148/376 (39%), Gaps = 110/376 (29%)
Query: 36 PPRGWNSYDAFCWIISEQEFLESADIVAKR-LLPHGYEYVVVDYLWYRKKVKGAHIDSEG 94
P GW++++ F +SEQ L++AD ++ L GY+Y+++D W + DS+G
Sbjct: 30 PQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSGR------DSDG 83
Query: 95 IDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIY 154
+V D +++P+ G +A +H+ FG++ G T A
Sbjct: 84 F--------LVADEQKFPNGMG-----HVADHLHNNSFLFGMYSSAGEYTCA-------- 122
Query: 155 DYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQYADWGV 214
G P + AQ F A N V
Sbjct: 123 ----GYPGSLGREEEDAQ---------------FFANNR--------------------V 143
Query: 215 DFVKHD-CAFGDDLDEGEIA-----VVSEVFKGQQNRPIIYSLSP-GTSATPAMAQKING 267
D++K+D C EI+ +S+ + RP+ YSL G T G
Sbjct: 144 DYLKYDNCYNKGQFGTPEISYHRYKAMSDALN-KTGRPVFYSLCNWGQDLTFYWGS---G 199
Query: 268 LANMYRVTGD--------------DWDSWPDVAA--HFSVARDF-AAANMTGALGLKGKS 310
+AN +R++GD D D + A H S+ AA M G+ G
Sbjct: 200 IANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGG-- 257
Query: 311 WPDLDMLPLGWLTDANSTQGPYRACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTY 370
W DLD L +G LT DE+K ++WAM KSPL+ G +V L ++Y
Sbjct: 258 WNDLDNLEVG-------------VGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSY 304
Query: 371 GLITNPTLLEIDHHSS 386
+ + +++ I+ S+
Sbjct: 305 SIYSQASVIAINQDSN 320
>pdb|3LRM|A Chain A, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|B Chain B, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|C Chain C, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|D Chain D, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
Length = 479
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 90/376 (23%), Positives = 151/376 (40%), Gaps = 110/376 (29%)
Query: 36 PPRGWNSYDAFCWIISEQEFLESADIVAKR-LLPHGYEYVVVDYLWYRKKVKGAHIDSEG 94
P GW++++ F +SEQ L++AD ++ L GY+Y+++D W + DS+G
Sbjct: 30 PQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSSGR------DSDG 83
Query: 95 IDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIY 154
+V D +++P+ G +A +H+ FG++ G T A
Sbjct: 84 F--------LVADEQKFPNGMG-----HVADHLHNNSFLFGMYSSAGEYTCA-------- 122
Query: 155 DYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQYADWGV 214
G P G R ++ A + +A+ V
Sbjct: 123 ----GYP----GSLGREEEDA-------------------------------QFFANNRV 143
Query: 215 DFVKH-DCAFGDDLDEGEIA-----VVSEVFKGQQNRPIIYSLSP-GTSATPAMAQKING 267
D++K+ +C EI+ +S+ + RP+ YSL G T G
Sbjct: 144 DYLKYANCYNKGQFGTPEISYHRYKAMSDALN-KTGRPVFYSLCNWGQDLTFYWGS---G 199
Query: 268 LANMYRVTGD--------------DWDSWPDVAA--HFSVARDF-AAANMTGALGLKGKS 310
+AN +R++GD D D + A H S+ AA M G+ G
Sbjct: 200 IANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGG-- 257
Query: 311 WPDLDMLPLGWLTDANSTQGPYRACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTY 370
W DLD L +G LT DE+K ++WAM KSPL+ G +V L ++Y
Sbjct: 258 WNDLDNLEVG-------------VGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSY 304
Query: 371 GLITNPTLLEIDHHSS 386
+ + +++ I+ S+
Sbjct: 305 SIYSQASVIAINQDSN 320
>pdb|3HG3|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3HG3|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3TV8|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3TV8|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 404
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/372 (23%), Positives = 136/372 (36%), Gaps = 108/372 (29%)
Query: 33 AALPPRGWNSYDAFCW----------IISEQEFLESADI-VAKRLLPHGYEYVVVDYLWY 81
A P GW ++ F ISE+ F+E A++ V++ GYEY+ +D W
Sbjct: 6 ARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWM 65
Query: 82 RKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKG 141
DSEG R+ DP+R+P G ++A VH GLK GI+ G
Sbjct: 66 -----APQRDSEG--------RLQADPQRFP-----HGIRQLANYVHSKGLKLGIYADVG 107
Query: 142 ISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAF 201
K CA P F +
Sbjct: 108 ------------------------------------NKTCAGFPGSFGYYDID------- 124
Query: 202 LRSLHKQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFK------GQQNRPIIYSLSPGT 255
+ +ADWGVD +K + D L+ +++ +K + R I+YS
Sbjct: 125 ----AQTFADWGVDLLKFAGCYCDSLEN-----LADGYKHMSLALNRTGRSIVYSCEWPL 175
Query: 256 SATPAMA---QKINGLANMYRVTGDDWDSWPDVAAHFSVARDFAAANMTGALGLKGKS-W 311
P +I N +R D DSW + + D+ + N + + G W
Sbjct: 176 YMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSIL----DWTSFNQERIVDVAGPGGW 231
Query: 312 PDLDMLPLGWLTDANSTQGPYRACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTYG 371
D DML +G L+ ++Q TQ+ LWA+ +PL D+R +
Sbjct: 232 NDPDMLVIG-------------NFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKA 278
Query: 372 LITNPTLLEIDH 383
L+ + ++ I+
Sbjct: 279 LLQDKDVIAINQ 290
>pdb|3H53|A Chain A, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H53|B Chain B, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H54|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H54|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H55|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3H55|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3IGU|A Chain A, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|3IGU|B Chain B, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|4DO4|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO4|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
Length = 400
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 131/363 (36%), Gaps = 96/363 (26%)
Query: 36 PPRGWNSYDAF-CWI---------ISEQEFLESADIVAKR-LLPHGYEYVVVDYLWYRKK 84
PP GW +++ F C I ISEQ F+E AD +A+ GY Y+ +D W +
Sbjct: 9 PPMGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNIDDCWIGGR 68
Query: 85 VKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGIST 144
D GR++PDP+R+P G +A VH +GLK GI
Sbjct: 69 --------------DASGRLMPDPKRFP-----HGIPFLADYVHSLGLKLGI-------- 101
Query: 145 QAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRS 204
Y G + G D +++
Sbjct: 102 -----------YADMGNFTCMGYPGTTLDKVVQDA------------------------- 125
Query: 205 LHKQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQNRPIIYSLS-PG-TSATPAMA 262
+ +A+W VD +K D F + + RPI +S S P P
Sbjct: 126 --QTFAEWKVDMLKLDGCFSTPEERAQGYPKMAAALNATGRPIAFSCSWPAYEGGLPPRV 183
Query: 263 QK--INGLANMYRVTGDDWDSWPDVAAHFSVARDFAAANMTGALGLKGKSWPDLDMLPLG 320
Q + + N++R D DSW V S+ F W D DML +G
Sbjct: 184 QYSLLADICNLWRNYDDIQDSWWSV---LSILNWFVEHQDILQPVAGPGHWNDPDMLLIG 240
Query: 321 WLTDANSTQGPYRACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTYGLITNPTLLE 380
L+ ++ + Q+ LW + +PL+ D+R + ++ NP +++
Sbjct: 241 -------------NFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNPLMIK 287
Query: 381 IDH 383
I+
Sbjct: 288 INQ 290
>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
Length = 614
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 85/362 (23%), Positives = 127/362 (35%), Gaps = 92/362 (25%)
Query: 37 PRGWNSYDAFCWIISEQEFLESAD-IVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGI 95
P GW S+++F I + D VA L GY Y+ +D W++
Sbjct: 13 PMGWASWNSFAAKIDYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTR---------- 62
Query: 96 DLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYD 155
D G + D WP G + I +H GLK GI+ G
Sbjct: 63 ---DSAGNITVDTAEWPG-----GMSAITAYIHSKGLKAGIYTDAG-------------- 100
Query: 156 YDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAG-KAFLRSLHKQYADWGV 214
D G Y GR P A G+G + Q++ WG
Sbjct: 101 KDGCGYYYPTGR------------PAA------------PGSGSEGHYDQDMLQFSTWGF 136
Query: 215 DFVKHDCAFGD--DLDEG----EIAVVSEVFKGQQNRPIIYSLSPGTSATPAMAQKINGL 268
DFVK D GD LD I+ RP+ S+ P G
Sbjct: 137 DFVKVDWCGGDAEGLDAATTYKSISDAVGRAAATTGRPLTLSICNWGYQNPW--NWAAGQ 194
Query: 269 ANMYRVTGDDWDSWPDVAAHFSVARDF-----AAANMTGALGLKGKSWPDLDMLPLGWLT 323
A ++R T D + + + S+ +F A TG + D DML +G
Sbjct: 195 APLWR-TSTDIIYYGNQPSMTSLLSNFDQTLHPTAQHTG-------YYNDPDMLMVG--- 243
Query: 324 DANSTQGPYRACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTYGLITNPTLLEIDH 383
T + +T + LWA++ +PL+ G D+ + T G++ NP ++ +D
Sbjct: 244 ----------MDGFTAAQNRTHMNLWAISGAPLLAGNDLTTMTSETAGILKNPEVIAVDQ 293
Query: 384 HS 385
S
Sbjct: 294 DS 295
>pdb|3IV6|A Chain A, Crystal Structure Of Putative Zn-Dependent Alcohol
Dehydrogenases From Rhodobacter Sphaeroides.
pdb|3IV6|B Chain B, Crystal Structure Of Putative Zn-Dependent Alcohol
Dehydrogenases From Rhodobacter Sphaeroides.
pdb|3IV6|C Chain C, Crystal Structure Of Putative Zn-Dependent Alcohol
Dehydrogenases From Rhodobacter Sphaeroides.
pdb|3IV6|D Chain D, Crystal Structure Of Putative Zn-Dependent Alcohol
Dehydrogenases From Rhodobacter Sphaeroides
Length = 261
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 55 FLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGI 95
F E+ D++ + L+PHG WYR++ K D E +
Sbjct: 182 FREAGDVLDRALVPHGLIDKPTLLEWYRRRGKETRFDDEDV 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,747,536
Number of Sequences: 62578
Number of extensions: 553959
Number of successful extensions: 1178
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1117
Number of HSP's gapped (non-prelim): 42
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)