Query 041825
Match_columns 391
No_of_seqs 141 out of 1500
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 11:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02899 alpha-galactosidase 100.0 8E-100 2E-104 777.3 31.7 363 28-391 23-385 (633)
2 PLN03231 putative alpha-galact 100.0 2.7E-94 5.8E-99 708.5 31.0 350 36-391 1-355 (357)
3 PLN02229 alpha-galactosidase 100.0 7.3E-82 1.6E-86 630.7 28.6 272 29-389 56-330 (427)
4 PLN02692 alpha-galactosidase 100.0 2.2E-81 4.8E-86 624.7 28.2 275 28-390 48-325 (412)
5 PLN02808 alpha-galactosidase 100.0 2.1E-80 4.5E-85 616.3 26.1 274 28-389 24-300 (386)
6 KOG2366 Alpha-D-galactosidase 100.0 3.7E-68 8E-73 512.9 18.5 282 25-389 22-321 (414)
7 PF02065 Melibiase: Melibiase; 100.0 1.5E-35 3.2E-40 298.0 14.2 209 31-278 36-257 (394)
8 COG3345 GalA Alpha-galactosida 99.9 2E-24 4.3E-29 217.7 13.4 171 31-234 287-464 (687)
9 PLN02355 probable galactinol-- 99.8 9.5E-20 2.1E-24 191.6 21.9 295 34-371 196-528 (758)
10 cd06592 GH31_glucosidase_KIAA1 99.8 2.5E-19 5.4E-24 175.6 23.0 202 34-285 12-227 (303)
11 PLN02219 probable galactinol-- 99.8 3.1E-19 6.7E-24 187.5 21.9 305 33-382 191-533 (775)
12 PLN02684 Probable galactinol-- 99.8 7.8E-19 1.7E-23 184.3 22.0 293 38-371 204-519 (750)
13 PF05691 Raffinose_syn: Raffin 99.8 2E-18 4.3E-23 182.8 20.8 303 38-386 197-548 (747)
14 PLN02711 Probable galactinol-- 99.8 5.1E-17 1.1E-21 171.0 20.7 301 38-385 215-564 (777)
15 cd06593 GH31_xylosidase_YicI Y 99.7 7.9E-17 1.7E-21 158.1 17.1 214 31-291 1-236 (308)
16 PLN02982 galactinol-raffinose 99.6 8E-14 1.7E-18 147.0 18.9 215 118-371 390-632 (865)
17 cd06604 GH31_glucosidase_II_Ma 99.5 2.1E-12 4.6E-17 128.6 19.0 195 50-290 21-248 (339)
18 PRK10658 putative alpha-glucos 99.5 3.7E-12 8.1E-17 136.6 21.4 215 30-290 257-494 (665)
19 cd06602 GH31_MGAM_SI_GAA This 99.5 5.3E-12 1.2E-16 125.7 20.1 199 50-291 21-231 (339)
20 PF01055 Glyco_hydro_31: Glyco 99.4 4E-12 8.8E-17 130.6 17.4 218 30-292 19-266 (441)
21 cd06600 GH31_MGAM-like This fa 99.4 1.1E-11 2.5E-16 122.3 19.4 212 31-291 1-227 (317)
22 cd06591 GH31_xylosidase_XylS X 99.4 5.7E-12 1.2E-16 124.5 16.4 196 50-291 21-243 (319)
23 cd06598 GH31_transferase_CtsZ 99.4 7.9E-12 1.7E-16 123.4 16.5 202 50-291 21-243 (317)
24 cd06599 GH31_glycosidase_Aec37 99.4 1.8E-11 3.9E-16 120.9 18.8 200 49-291 25-250 (317)
25 cd06597 GH31_transferase_CtsY 99.4 5.1E-11 1.1E-15 118.8 20.3 231 31-291 1-263 (340)
26 cd06594 GH31_glucosidase_YihQ 99.4 6.1E-11 1.3E-15 117.1 20.6 212 31-290 1-246 (317)
27 cd06595 GH31_xylosidase_XylS-l 99.4 4.6E-11 9.9E-16 116.7 18.9 208 30-289 1-222 (292)
28 cd06603 GH31_GANC_GANAB_alpha 99.3 1.1E-10 2.5E-15 116.2 18.4 197 50-291 21-249 (339)
29 cd06601 GH31_lyase_GLase GLase 99.3 2.7E-10 5.8E-15 113.1 20.0 171 50-291 21-231 (332)
30 COG1501 Alpha-glucosidases, fa 99.2 1.6E-10 3.4E-15 125.6 16.6 212 30-290 255-492 (772)
31 cd06589 GH31 The enzymes of gl 99.2 1.1E-09 2.3E-14 105.6 20.2 168 31-291 1-198 (265)
32 PLN02763 hydrolase, hydrolyzin 99.2 2.2E-09 4.8E-14 118.2 21.9 212 30-290 177-427 (978)
33 PRK10426 alpha-glucosidase; Pr 99.1 1.8E-09 3.9E-14 115.7 17.6 218 30-289 198-442 (635)
34 KOG1065 Maltase glucoamylase a 98.4 1.6E-06 3.5E-11 93.2 12.0 151 30-221 287-446 (805)
35 PF10566 Glyco_hydro_97: Glyco 98.4 4E-06 8.7E-11 80.9 11.6 129 48-252 27-156 (273)
36 PF02638 DUF187: Glycosyl hydr 96.8 0.026 5.7E-07 55.8 13.9 90 119-222 71-163 (311)
37 PLN00196 alpha-amylase; Provis 96.5 0.049 1.1E-06 56.2 13.4 35 188-222 170-205 (428)
38 PF13200 DUF4015: Putative gly 95.8 0.097 2.1E-06 51.8 11.2 84 119-222 62-146 (316)
39 KOG1066 Glucosidase II catalyt 95.6 0.042 9.1E-07 58.8 8.3 137 30-207 348-491 (915)
40 TIGR01515 branching_enzym alph 95.5 0.13 2.9E-06 55.4 11.8 130 65-222 165-297 (613)
41 cd06596 GH31_CPE1046 CPE1046 i 94.8 0.27 5.9E-06 47.2 10.3 104 119-292 76-183 (261)
42 KOG2366 Alpha-D-galactosidase 94.7 0.0079 1.7E-07 60.0 -0.2 148 209-389 37-186 (414)
43 PF14871 GHL6: Hypothetical gl 94.5 0.64 1.4E-05 40.2 11.1 123 62-220 5-131 (132)
44 PRK14706 glycogen branching en 93.8 0.45 9.7E-06 51.7 10.9 138 56-222 167-308 (639)
45 PLN02361 alpha-amylase 93.8 1.3 2.8E-05 45.4 13.6 36 188-223 146-182 (401)
46 COG0296 GlgB 1,4-alpha-glucan 93.7 0.4 8.7E-06 51.6 10.1 134 55-223 163-306 (628)
47 PRK14705 glycogen branching en 93.6 0.29 6.3E-06 56.5 9.2 125 64-222 773-906 (1224)
48 COG1649 Uncharacterized protei 92.9 2.3 5E-05 43.7 13.5 89 119-221 116-207 (418)
49 PLN02447 1,4-alpha-glucan-bran 92.5 1.2 2.5E-05 49.3 11.5 132 64-222 258-392 (758)
50 PRK12568 glycogen branching en 92.5 1.4 3E-05 48.6 12.0 138 56-222 269-410 (730)
51 PLN02784 alpha-amylase 92.0 2.7 5.9E-05 46.9 13.5 35 189-223 641-676 (894)
52 TIGR02104 pulA_typeI pullulana 91.8 1.6 3.4E-05 47.2 11.5 60 190-252 288-348 (605)
53 PRK05402 glycogen branching en 91.4 1.9 4.1E-05 47.6 11.8 130 64-222 273-406 (726)
54 PLN02960 alpha-amylase 91.2 1.4 3.1E-05 49.1 10.4 132 64-222 424-558 (897)
55 smart00812 Alpha_L_fucos Alpha 90.7 4.3 9.2E-05 41.4 12.8 22 119-140 129-150 (384)
56 TIGR02403 trehalose_treC alpha 90.6 2.4 5.1E-05 45.2 11.3 34 189-222 162-195 (543)
57 PRK10785 maltodextrin glucosid 90.5 3.6 7.8E-05 44.4 12.6 176 51-250 177-370 (598)
58 PRK12313 glycogen branching en 90.3 3.3 7.3E-05 44.9 12.3 130 64-222 178-311 (633)
59 TIGR02402 trehalose_TreZ malto 89.8 7.3 0.00016 41.6 14.2 61 190-251 210-279 (542)
60 PF01120 Alpha_L_fucos: Alpha- 89.5 2.6 5.7E-05 42.2 10.1 22 120-141 140-161 (346)
61 PRK10933 trehalose-6-phosphate 88.8 5.2 0.00011 42.8 12.2 34 189-222 169-202 (551)
62 TIGR02456 treS_nterm trehalose 87.1 5.8 0.00012 42.2 11.3 34 189-222 166-199 (539)
63 PRK03705 glycogen debranching 86.5 5.3 0.00012 43.6 10.7 33 190-222 305-338 (658)
64 TIGR02103 pullul_strch alpha-1 86.4 6.2 0.00013 44.6 11.4 61 191-254 466-527 (898)
65 TIGR02102 pullulan_Gpos pullul 83.0 13 0.00028 43.0 12.2 60 190-252 611-671 (1111)
66 TIGR01370 cysRS possible cyste 81.8 13 0.00028 36.9 10.3 84 122-223 85-170 (315)
67 COG1523 PulA Type II secretory 81.4 14 0.00031 40.6 11.2 33 190-222 328-361 (697)
68 PLN02877 alpha-amylase/limit d 80.0 21 0.00045 40.8 12.1 60 192-254 530-598 (970)
69 PLN03244 alpha-amylase; Provis 74.9 8.2 0.00018 42.9 7.0 34 189-222 499-533 (872)
70 PRK09936 hypothetical protein; 72.7 14 0.0003 36.2 7.3 95 1-141 1-97 (296)
71 PF07302 AroM: AroM protein; 70.6 5.8 0.00013 37.3 4.2 143 49-251 66-209 (221)
72 KOG0470 1,4-alpha-glucan branc 69.3 15 0.00033 40.1 7.4 32 191-222 372-404 (757)
73 PRK09441 cytoplasmic alpha-amy 67.2 16 0.00034 38.3 7.0 52 188-241 200-252 (479)
74 cd02803 OYE_like_FMN_family Ol 65.9 1.3E+02 0.0029 29.3 13.1 32 48-79 129-163 (327)
75 PF00128 Alpha-amylase: Alpha 65.2 15 0.00032 34.8 6.0 53 187-241 135-187 (316)
76 PF13199 Glyco_hydro_66: Glyco 64.7 38 0.00082 36.4 9.3 234 29-295 96-350 (559)
77 TIGR02100 glgX_debranch glycog 64.5 35 0.00075 37.7 9.2 34 190-223 310-344 (688)
78 PRK14510 putative bifunctional 63.9 45 0.00097 39.3 10.4 33 190-222 312-344 (1221)
79 cd06546 GH18_CTS3_chitinase GH 63.9 77 0.0017 30.3 10.6 54 198-253 97-150 (256)
80 PF01791 DeoC: DeoC/LacD famil 63.7 45 0.00097 31.2 8.8 50 201-251 147-200 (236)
81 KOG3111 D-ribulose-5-phosphate 62.1 8.9 0.00019 35.4 3.4 27 119-145 100-126 (224)
82 cd00598 GH18_chitinase-like Th 56.8 1.5E+02 0.0032 26.6 11.1 56 198-253 89-148 (210)
83 cd06542 GH18_EndoS-like Endo-b 56.5 1.2E+02 0.0025 28.6 10.3 56 197-252 88-151 (255)
84 COG3469 Chitinase [Carbohydrat 55.6 25 0.00053 34.0 5.3 55 198-253 119-180 (332)
85 PRK14864 putative biofilm stre 55.5 28 0.00062 28.8 5.1 20 1-20 5-24 (104)
86 cd06545 GH18_3CO4_chitinase Th 54.2 1.6E+02 0.0035 27.7 10.9 53 196-252 81-138 (253)
87 cd02871 GH18_chitinase_D-like 53.7 45 0.00098 32.8 7.2 57 197-253 94-155 (312)
88 PRK13397 3-deoxy-7-phosphohept 53.5 1.1E+02 0.0023 29.5 9.4 56 51-134 27-82 (250)
89 cd03465 URO-D_like The URO-D _ 53.3 98 0.0021 30.2 9.6 55 64-139 175-229 (330)
90 PF14488 DUF4434: Domain of un 52.9 30 0.00064 31.0 5.3 74 47-140 14-89 (166)
91 cd06414 GH25_LytC-like The Lyt 52.0 15 0.00032 33.4 3.2 24 119-142 114-137 (191)
92 PF02449 Glyco_hydro_42: Beta- 52.0 31 0.00068 34.7 5.9 61 50-139 7-68 (374)
93 PRK14582 pgaB outer membrane N 51.1 2.2E+02 0.0048 31.4 12.5 134 51-221 328-466 (671)
94 cd02931 ER_like_FMN Enoate red 50.9 87 0.0019 31.8 8.9 80 48-140 138-227 (382)
95 PRK13840 sucrose phosphorylase 50.8 19 0.0004 38.1 4.1 35 188-222 161-195 (495)
96 cd02875 GH18_chitobiase Chitob 50.5 48 0.001 33.4 6.9 83 195-278 93-189 (358)
97 PRK09441 cytoplasmic alpha-amy 48.6 38 0.00082 35.4 6.1 17 118-134 81-97 (479)
98 cd06522 GH25_AtlA-like AtlA is 47.9 27 0.00058 31.8 4.3 23 119-141 110-133 (192)
99 COG3669 Alpha-L-fucosidase [Ca 47.7 91 0.002 32.0 8.2 22 120-141 103-124 (430)
100 cd02874 GH18_CFLE_spore_hydrol 47.5 49 0.0011 32.3 6.3 58 195-253 84-146 (313)
101 smart00642 Aamy Alpha-amylase 46.8 44 0.00096 29.7 5.4 18 118-135 70-87 (166)
102 PF03102 NeuB: NeuB family; I 46.3 61 0.0013 30.9 6.6 16 119-134 57-72 (241)
103 cd06549 GH18_trifunctional GH1 45.5 67 0.0015 31.3 6.9 79 195-276 85-168 (298)
104 TIGR01463 mtaA_cmuA methyltran 45.5 99 0.0022 30.5 8.3 52 64-139 187-241 (340)
105 PRK06852 aldolase; Validated 44.0 1.5E+02 0.0032 29.4 9.0 47 201-251 189-237 (304)
106 TIGR03852 sucrose_gtfA sucrose 44.0 28 0.0006 36.6 4.1 35 188-222 157-191 (470)
107 cd02930 DCR_FMN 2,4-dienoyl-Co 43.9 3.2E+02 0.007 27.2 11.7 30 48-77 125-157 (353)
108 cd02879 GH18_plant_chitinase_c 43.5 45 0.00099 32.5 5.4 56 198-253 93-157 (299)
109 PRK06769 hypothetical protein; 43.3 43 0.00093 29.8 4.8 21 119-139 32-52 (173)
110 PF04202 Mfp-3: Foot protein 3 42.8 30 0.00064 26.2 3.0 27 1-27 1-27 (71)
111 cd00465 URO-D_CIMS_like The UR 42.0 64 0.0014 31.1 6.2 51 64-138 151-206 (306)
112 cd08577 PI-PLCc_GDPD_SF_unchar 41.3 61 0.0013 30.6 5.7 21 120-140 187-207 (228)
113 PRK13523 NADPH dehydrogenase N 40.8 1.3E+02 0.0027 30.1 8.2 103 50-219 132-246 (337)
114 PF00834 Ribul_P_3_epim: Ribul 40.3 41 0.00088 31.1 4.2 28 119-146 93-120 (201)
115 cd06416 GH25_Lys1-like Lys-1 i 40.1 27 0.00059 31.7 3.1 23 119-141 111-133 (196)
116 TIGR02401 trehalose_TreY malto 40.1 67 0.0014 36.2 6.5 49 188-237 221-271 (825)
117 PRK14511 maltooligosyl trehalo 39.1 70 0.0015 36.2 6.5 77 46-138 13-89 (879)
118 TIGR00060 L18_bact ribosomal p 38.5 65 0.0014 27.2 4.8 51 51-134 64-114 (114)
119 cd02932 OYE_YqiM_FMN Old yello 38.3 1.4E+02 0.0031 29.5 8.1 32 48-79 142-176 (336)
120 PF02571 CbiJ: Precorrin-6x re 38.3 79 0.0017 30.2 6.0 62 190-252 70-138 (249)
121 cd04735 OYE_like_4_FMN Old yel 37.5 1.5E+02 0.0032 29.7 8.2 75 47-139 131-223 (353)
122 PF00704 Glyco_hydro_18: Glyco 37.3 41 0.00088 32.8 4.0 54 198-252 100-164 (343)
123 COG2113 ProX ABC-type proline/ 36.9 31 0.00068 34.0 3.1 13 61-73 49-61 (302)
124 cd06522 GH25_AtlA-like AtlA is 36.1 3.3E+02 0.0071 24.6 11.3 19 120-138 44-62 (192)
125 TIGR03569 NeuB_NnaB N-acetylne 36.1 1.1E+02 0.0024 30.6 6.8 17 118-134 76-92 (329)
126 COG2200 Rtn c-di-GMP phosphodi 36.1 69 0.0015 30.5 5.3 46 206-252 164-214 (256)
127 cd02878 GH18_zymocin_alpha Zym 35.8 74 0.0016 31.7 5.6 57 196-252 89-157 (345)
128 PRK07534 methionine synthase I 35.0 1.2E+02 0.0026 30.3 7.0 56 193-253 124-179 (336)
129 cd06548 GH18_chitinase The GH1 34.5 81 0.0018 31.0 5.6 55 199-253 111-182 (322)
130 cd08607 GDPD_GDE5 Glycerophosp 34.2 82 0.0018 30.3 5.5 17 206-222 274-290 (290)
131 TIGR03326 rubisco_III ribulose 34.1 81 0.0018 32.6 5.6 51 202-253 162-219 (412)
132 cd08605 GDPD_GDE5_like_1_plant 33.8 79 0.0017 30.3 5.3 17 205-221 265-281 (282)
133 cd08209 RLP_DK-MTP-1-P-enolase 33.4 80 0.0017 32.4 5.4 51 202-253 142-199 (391)
134 cd08148 RuBisCO_large Ribulose 32.9 83 0.0018 32.0 5.4 51 202-253 145-202 (366)
135 PF00016 RuBisCO_large: Ribulo 32.7 1E+02 0.0022 30.6 5.9 50 202-252 32-88 (309)
136 COG1830 FbaB DhnA-type fructos 32.6 2.6E+02 0.0057 27.1 8.4 40 205-252 171-210 (265)
137 PRK08227 autoinducer 2 aldolas 32.6 3.5E+02 0.0077 26.2 9.5 42 201-252 159-200 (264)
138 cd08575 GDPD_GDE4_like Glycero 32.4 94 0.002 29.7 5.5 18 121-138 221-238 (264)
139 COG3325 ChiA Chitinase [Carboh 32.3 1.6E+02 0.0035 30.6 7.3 55 198-252 152-223 (441)
140 cd02876 GH18_SI-CLP Stabilin-1 32.1 1.2E+02 0.0026 29.7 6.4 57 196-253 90-156 (318)
141 PF05984 Cytomega_UL20A: Cytom 31.6 38 0.00082 26.9 2.1 16 2-17 4-19 (100)
142 cd08210 RLP_RrRLP Ribulose bis 31.4 1.2E+02 0.0026 30.7 6.4 52 202-253 143-200 (364)
143 KOG2672 Lipoate synthase [Coen 31.3 69 0.0015 31.4 4.2 31 189-225 137-167 (360)
144 PHA02119 hypothetical protein 31.1 42 0.00091 25.7 2.2 28 103-134 43-70 (87)
145 cd08207 RLP_NonPhot Ribulose b 31.1 88 0.0019 32.3 5.3 51 202-253 161-218 (406)
146 TIGR03332 salvage_mtnW 2,3-dik 30.9 86 0.0019 32.4 5.2 51 202-253 157-214 (407)
147 PRK09549 mtnW 2,3-diketo-5-met 30.7 98 0.0021 31.9 5.6 51 202-253 152-209 (407)
148 COG1663 LpxK Tetraacyldisaccha 30.5 1.5E+02 0.0033 29.7 6.7 20 120-139 66-85 (336)
149 smart00636 Glyco_18 Glycosyl h 29.8 1.1E+02 0.0025 29.8 5.8 83 199-282 93-190 (334)
150 TIGR01668 YqeG_hyp_ppase HAD s 29.7 1.1E+02 0.0023 27.1 5.1 21 119-139 47-67 (170)
151 COG1306 Uncharacterized conser 29.7 3.1E+02 0.0068 27.3 8.4 35 188-222 184-218 (400)
152 PRK09485 mmuM homocysteine met 29.6 1.7E+02 0.0038 28.6 7.0 56 193-253 133-190 (304)
153 CHL00139 rpl18 ribosomal prote 29.6 1.1E+02 0.0025 25.4 4.9 52 50-134 58-109 (109)
154 cd08583 PI-PLCc_GDPD_SF_unchar 29.5 1.4E+02 0.003 27.8 6.1 19 205-223 218-236 (237)
155 KOG3340 Alpha-L-fucosidase [Ca 29.3 40 0.00087 33.7 2.3 23 120-142 152-174 (454)
156 cd08213 RuBisCO_large_III Ribu 29.1 1.1E+02 0.0024 31.6 5.6 51 202-253 149-206 (412)
157 cd06544 GH18_narbonin Narbonin 28.8 2.3E+02 0.0051 27.0 7.6 44 199-244 99-146 (253)
158 COG2894 MinD Septum formation 28.7 53 0.0012 31.3 2.9 26 49-78 96-121 (272)
159 TIGR03315 Se_ygfK putative sel 28.4 40 0.00086 38.9 2.5 49 66-140 256-304 (1012)
160 cd08580 GDPD_Rv2277c_like Glyc 28.2 1.4E+02 0.003 28.8 5.8 18 121-138 219-237 (263)
161 cd02872 GH18_chitolectin_chito 28.2 1.1E+02 0.0023 30.6 5.3 83 199-282 98-194 (362)
162 COG1902 NemA NADH:flavin oxido 27.8 2.5E+02 0.0055 28.4 7.9 76 47-140 136-225 (363)
163 COG0407 HemE Uroporphyrinogen- 27.6 2E+02 0.0044 29.0 7.1 47 64-133 196-242 (352)
164 PLN02489 homocysteine S-methyl 27.1 2E+02 0.0043 28.7 7.0 55 193-252 160-216 (335)
165 COG0036 Rpe Pentose-5-phosphat 27.1 82 0.0018 29.7 3.9 36 104-145 88-123 (220)
166 cd08208 RLP_Photo Ribulose bis 26.1 1.1E+02 0.0023 31.9 4.9 51 202-253 178-235 (424)
167 PF08194 DIM: DIM protein; In 26.1 68 0.0015 21.4 2.3 16 1-16 1-16 (36)
168 cd08206 RuBisCO_large_I_II_III 26.0 1.3E+02 0.0028 31.1 5.5 51 202-253 150-207 (414)
169 PRK10781 rcsF outer membrane l 25.8 79 0.0017 27.4 3.3 18 1-18 1-18 (133)
170 PF07172 GRP: Glycine rich pro 25.2 67 0.0014 26.1 2.6 35 3-37 8-42 (95)
171 cd08612 GDPD_GDE4 Glycerophosp 25.1 1.6E+02 0.0035 28.7 5.8 18 121-138 251-268 (300)
172 cd06564 GH20_DspB_LnbB-like Gl 24.8 3E+02 0.0065 27.1 7.7 58 188-249 129-198 (326)
173 PRK09121 5-methyltetrahydropte 24.5 70 0.0015 32.0 3.2 40 42-82 139-181 (339)
174 PF00879 Defensin_propep: Defe 24.3 97 0.0021 22.4 3.0 18 1-18 1-18 (52)
175 cd08564 GDPD_GsGDE_like Glycer 24.3 1.5E+02 0.0033 28.1 5.4 18 121-138 213-230 (265)
176 cd08581 GDPD_like_1 Glyceropho 24.1 1.5E+02 0.0033 27.6 5.3 16 206-221 213-228 (229)
177 cd08205 RuBisCO_IV_RLP Ribulos 24.1 1.4E+02 0.0031 30.2 5.3 51 202-252 148-204 (367)
178 TIGR01459 HAD-SF-IIA-hyp4 HAD- 23.7 91 0.002 29.1 3.7 33 102-140 17-49 (242)
179 PRK12595 bifunctional 3-deoxy- 23.7 5.6E+02 0.012 25.9 9.5 17 118-134 169-185 (360)
180 PRK14507 putative bifunctional 23.6 1.6E+02 0.0034 36.0 6.2 78 46-140 751-829 (1693)
181 PRK13680 hypothetical protein; 23.5 1.9E+02 0.0041 24.5 5.0 54 1-67 1-56 (117)
182 PTZ00032 60S ribosomal protein 23.4 1.6E+02 0.0034 27.5 4.9 49 53-134 163-211 (211)
183 cd08574 GDPD_GDE_2_3_6 Glycero 23.3 1.7E+02 0.0036 27.7 5.4 18 121-138 213-230 (252)
184 TIGR01691 enolase-ppase 2,3-di 23.0 89 0.0019 29.2 3.4 26 109-140 95-120 (220)
185 PRK08645 bifunctional homocyst 22.9 2.3E+02 0.0051 30.7 7.0 56 193-253 118-174 (612)
186 KOG0410 Predicted GTP binding 22.9 44 0.00095 33.6 1.3 34 189-222 263-297 (410)
187 cd08212 RuBisCO_large_I Ribulo 22.8 1.7E+02 0.0037 30.6 5.7 51 202-253 163-220 (450)
188 TIGR03128 RuMP_HxlA 3-hexulose 22.8 5.2E+02 0.011 23.2 8.5 18 120-137 91-108 (206)
189 PF01301 Glyco_hydro_35: Glyco 22.8 2.6E+02 0.0057 27.6 6.9 69 48-142 19-87 (319)
190 PRK09853 putative selenate red 22.5 67 0.0014 37.1 2.9 49 66-140 258-306 (1019)
191 cd08609 GDPD_GDE3 Glycerophosp 22.5 2.5E+02 0.0054 27.8 6.6 17 205-221 258-274 (315)
192 PF03537 Glyco_hydro_114: Glyc 22.5 1.3E+02 0.0028 23.0 3.7 22 121-142 39-60 (74)
193 cd08573 GDPD_GDE1 Glycerophosp 22.4 1.9E+02 0.0041 27.5 5.6 18 121-138 218-235 (258)
194 PF09863 DUF2090: Uncharacteri 22.3 1.8E+02 0.0039 28.8 5.4 128 204-363 129-271 (311)
195 TIGR03586 PseI pseudaminic aci 22.3 3E+02 0.0066 27.5 7.2 15 120-134 79-93 (327)
196 PRK06233 hypothetical protein; 22.3 83 0.0018 31.9 3.3 38 44-82 156-196 (372)
197 PRK05593 rplR 50S ribosomal pr 22.1 1.8E+02 0.004 24.5 4.8 51 51-134 67-117 (117)
198 PRK04208 rbcL ribulose bisopho 22.0 2E+02 0.0044 30.2 6.1 51 202-253 178-235 (468)
199 PRK09454 ugpQ cytoplasmic glyc 22.0 2.1E+02 0.0046 26.9 5.9 18 121-138 199-216 (249)
200 PF13204 DUF4038: Protein of u 21.9 83 0.0018 30.7 3.1 151 38-241 16-175 (289)
201 cd08555 PI-PLCc_GDPD_SF Cataly 21.8 2E+02 0.0044 25.5 5.4 19 120-138 138-156 (179)
202 PTZ00445 p36-lilke protein; Pr 21.7 2.1E+02 0.0045 27.0 5.4 69 55-137 27-97 (219)
203 PF09601 DUF2459: Protein of u 21.4 2E+02 0.0043 26.0 5.2 71 48-138 96-167 (173)
204 COG1400 SEC65 Signal recogniti 21.3 87 0.0019 25.5 2.5 51 64-130 39-89 (93)
205 PF12276 DUF3617: Protein of u 21.2 76 0.0016 27.7 2.4 16 1-16 1-16 (162)
206 PRK09250 fructose-bisphosphate 21.1 4.4E+02 0.0094 26.7 8.0 23 201-223 218-240 (348)
207 PF05913 DUF871: Bacterial pro 21.1 2.5E+02 0.0055 28.4 6.4 39 206-253 82-120 (357)
208 cd08601 GDPD_SaGlpQ_like Glyce 21.1 2.2E+02 0.0048 26.7 5.8 16 206-221 232-247 (256)
209 cd08563 GDPD_TtGDE_like Glycer 20.8 2.2E+02 0.0048 26.2 5.6 16 206-221 214-229 (230)
210 PRK10455 periplasmic protein; 20.8 80 0.0017 28.2 2.5 18 1-18 1-18 (161)
211 PRK06252 methylcobalamin:coenz 20.7 5E+02 0.011 25.4 8.5 54 65-141 188-241 (339)
212 cd08610 GDPD_GDE6 Glycerophosp 20.5 2.1E+02 0.0046 28.4 5.7 18 205-222 258-275 (316)
213 PRK15346 outer membrane secret 20.4 95 0.002 32.8 3.3 35 40-79 26-60 (499)
214 PLN02433 uroporphyrinogen deca 20.4 2.9E+02 0.0064 27.4 6.7 53 194-249 290-343 (345)
215 PF07485 DUF1529: Domain of Un 20.2 77 0.0017 27.1 2.2 62 19-84 22-95 (123)
216 PF08924 DUF1906: Domain of un 20.2 84 0.0018 27.1 2.4 18 120-137 118-135 (136)
217 COG0854 PdxJ Pyridoxal phospha 20.1 5.9E+02 0.013 24.2 8.0 22 119-140 112-133 (243)
218 cd08562 GDPD_EcUgpQ_like Glyce 20.1 2.4E+02 0.0052 25.7 5.7 16 206-221 213-228 (229)
No 1
>PLN02899 alpha-galactosidase
Probab=100.00 E-value=8.1e-100 Score=777.29 Aligned_cols=363 Identities=74% Similarity=1.294 Sum_probs=338.3
Q ss_pred cccCCCCCCceEeeccccccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeC
Q 041825 28 KETEHAALPPRGWNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPD 107 (391)
Q Consensus 28 ~~~~~~~~pPmGWnSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d 107 (391)
+++++++|||||||||+.|.++|||++|+++||+|++||+++||+||+|||||+...+.|.|+++.|...+|++|+++||
T Consensus 23 ~~~glA~TPPMGWNSWn~f~~~I~E~~i~~~Ad~vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrLvPD 102 (633)
T PLN02899 23 SQQQLASFPPRGWNSYDSFSWIVSEEEFLQNAEIVSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRPIPD 102 (633)
T ss_pred ccCcccCCCCCCCcchhhhccCCCHHHHHHHHHHHHcchHhhCCeEEEEccccccccccccccccccccccCCCCCCccC
Confidence 44799999999999999999999999999999999999999999999999999986555666666777789999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCC
Q 041825 108 PERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHG 187 (391)
Q Consensus 108 ~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~ 187 (391)
|+|||++.+++|||+||||||+||||||||+++|+++||+..++||.++.+|+.|.+.|+.|+++||..+..+|.|++.+
T Consensus 103 p~RFPSs~~g~GmK~LADYVHskGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DIa~~~~tC~w~~~g 182 (633)
T PLN02899 103 PGRWPSSRGGKGFTEVAEKVHAMGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDIALKERACAWMSHG 182 (633)
T ss_pred cccCCCCccCCCcHHHHHHHHhCCcceEEEecCCCcccccccCCccccccccccccccccccchhhccccccccccCCCC
Confidence 99999988899999999999999999999999999999999999999988899999888899999999999999999988
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCCCCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCCChhHHHhhhc
Q 041825 188 FMAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQNRPIIYSLSPGTSATPAMAQKING 267 (391)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~~~gr~i~ls~~~~~~~~p~~~~~~~~ 267 (391)
++.+|.++|++|+|+++++++||+|||||||+|+|+++.+++++|++|++||++ +||||+||+|+|....|.|+.++.+
T Consensus 183 ~~~vDa~~~~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~~~~~ey~~ms~AL~a-TGRPIvySLspG~~~~p~wa~~v~~ 261 (633)
T PLN02899 183 FMSVNTKLGAGKAFLRSLYDQYAEWGVDFVKHDCVFGDDFDLEEITYVSEVLKE-LDRPIVYSLSPGTSATPTMAKEVSG 261 (633)
T ss_pred cccccccccchhhhhHHHHHHHHHhCCCEEEEcCCCCCCCChHHHHHHHHHHHH-hCCCeEEEecCCcccchhhhhhhhc
Confidence 999999999999999999999999999999999998877778899999999999 9999999999977767788888888
Q ss_pred cccEEEecCCCCCChhhHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 041825 268 LANMYRVTGDDWDSWPDVAAHFSVARDFAAANMTGALGLKGKSWPDLDMLPLGWLTDANSTQGPYRACKLTQDEQKTQIT 347 (391)
Q Consensus 268 ~an~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~wnDpDml~~G~~~~~~~~~g~~~~~~lt~~E~rt~~t 347 (391)
++|+|||++|+++.|.++..+++..+.|+....++.++++|++|||||||+||.+++++.|.|+++.++||.+|+||||+
T Consensus 262 ~aNmWRitgDI~D~W~sV~~~~d~~~~~~~~~~~g~~G~~gg~WNDpDML~VG~lg~~~~n~G~~r~~~LT~dE~rThfS 341 (633)
T PLN02899 262 LVNMYRITGDDWDTWGDVAAHFDVSRDFAAAGLIGAKGLRGRSWPDLDMLPLGWLTDPGSNVGPHRACNLTLDEQKTQMT 341 (633)
T ss_pred cCccceecCCcccchHHHHHHHHHHHHHhhccccccCCCCCCCCCCcceecccCCCccccccCccccCCCCHHHHHHHHH
Confidence 99999999999999999999999888887655555566667899999999999998887788888899999999999999
Q ss_pred HHHHhcCCcccccCCCCCCHhHHhhccChhhHhhhcCCCCCCCC
Q 041825 348 LWAMAKSPLMFGGDVRKLDDTTYGLITNPTLLEIDHHSSNNKEA 391 (391)
Q Consensus 348 lwa~~~sPL~ig~Dl~~l~~~~l~lL~N~eviavnQd~~~~~~~ 391 (391)
||||++||||+|.||++|++++++||+|+||||||||+++++++
T Consensus 342 LWAm~aSPLiiG~DLr~md~~tl~ILTNkeVIAINQds~~n~~~ 385 (633)
T PLN02899 342 LWAMAKSPLMYGGDLRKLDQATYSLITNPTLLEINSHSSNNMEF 385 (633)
T ss_pred HHHHHhCchhhcCCcccCCHHHHHHhcCHHHeEEccCccCCeee
Confidence 99999999999999999999999999999999999999999874
No 2
>PLN03231 putative alpha-galactosidase; Provisional
Probab=100.00 E-value=2.7e-94 Score=708.46 Aligned_cols=350 Identities=58% Similarity=1.065 Sum_probs=304.0
Q ss_pred CceEeeccccccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccc---CCCCccccCCCCCceeCCCCCC
Q 041825 36 PPRGWNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHI---DSEGIDLIDEWGRMVPDPERWP 112 (391)
Q Consensus 36 pPmGWnSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~---~~~~~~~~d~~G~~~~d~~kFP 112 (391)
||||||||+.|.|+|||++|+++||+|+++|+++||+||+|||||+...+.|.+. .+.+...||++|+++||++|||
T Consensus 1 PpMGWNSWn~f~~~i~E~~i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFP 80 (357)
T PLN03231 1 PPRGWNSYDSFSFTISEEQFLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWP 80 (357)
T ss_pred CCCCccchhccCcCcCHHHHHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCC
Confidence 8999999999999999999999999889999999999999999999753222100 0111224799999999999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCceeec
Q 041825 113 SSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVN 192 (391)
Q Consensus 113 ~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD 192 (391)
++.+++|||+||||||+||||||||+++|+.+|++..++||.+... + .|.+++++||......|.|.++.+..+|
T Consensus 81 s~~~~~G~k~lADyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~~G-s----~g~~~~a~Dia~~~~~c~~~~~~~~~v~ 155 (357)
T PLN03231 81 STTGGKGFAPIAAKVHALGLKLGIHVMRGISTTAVKKKTPILGAFK-S----NGHAWNAKDIALMDQACPWMQQCFVGVN 155 (357)
T ss_pred CCccccCcHHHHHHHHhCCcceEEEecCCccchhcccCCccCCCCc-c----cccccchhhhcccccccccccccccccc
Confidence 9888899999999999999999999999999999999999885411 1 1456778999888889999999888999
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCcEEeecCCCCCC-CChHHHHHHHHHHHhccCCcEEEEeCCCCCCChhHHHhhhccccE
Q 041825 193 TKLGAGKAFLRSLHKQYADWGVDFVKHDCAFGDD-LDEGEIAVVSEVFKGQQNRPIIYSLSPGTSATPAMAQKINGLANM 271 (391)
Q Consensus 193 ~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~-~~~~~~~~~~~Al~~~~gr~i~ls~~~~~~~~p~~~~~~~~~an~ 271 (391)
.++|++|+|+++++++|++|||||||+|+|++.. ...++|.+|++||++ +||||+||+|++....|.|+..+.+++|+
T Consensus 156 ~~~~gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~-tGRpIv~Slc~g~~~~~~~~~~i~~~an~ 234 (357)
T PLN03231 156 TSSEGGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRN-SGRPMIYSLSPGDGATPGLAARVAQLVNM 234 (357)
T ss_pred ccchhHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHH-hCCCeEEEecCCCCCCchhhhhhhhhcCc
Confidence 9999999999999999999999999999997643 456899999999999 99999999999766667788777889999
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHHHhhhhcccC-CCCCCCCCCCCcccccccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 041825 272 YRVTGDDWDSWPDVAAHFSVARDFAAANMTGALG-LKGKSWPDLDMLPLGWLTDANSTQGPYRACKLTQDEQKTQITLWA 350 (391)
Q Consensus 272 ~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wnDpDml~~G~~~~~~~~~g~~~~~~lt~~E~rt~~tlwa 350 (391)
|||+.||++.|.++.++++..+.|+.......++ .+||+|||||||+||.+++++...|..++++||.+|+||||||||
T Consensus 235 WR~s~DI~d~W~~v~~~~~~~~~~~~~~~~~~~~~agpG~WnD~DML~vG~~g~~~~~~g~~~~~glT~~E~rthfslWa 314 (357)
T PLN03231 235 YRVTGDDWDDWKYLVKHFDVARDFAAAGLIAIPSVVGGKSWVDLDMLPFGRLTDPAAAYGPYRNSRLSLEEKKTQMTLWA 314 (357)
T ss_pred ccccCCcccchhhHHHHHHHHHHHhhhcccccccCCCCCCCCCccchhcCCCCCCcccccccccCCCCHHHHHHHHHHHH
Confidence 9999999999999999999877776543333222 256899999999999876554334566788999999999999999
Q ss_pred HhcCCcccccCCCCCCHhHHhhccChhhHhhhcCCCCCCCC
Q 041825 351 MAKSPLMFGGDVRKLDDTTYGLITNPTLLEIDHHSSNNKEA 391 (391)
Q Consensus 351 ~~~sPL~ig~Dl~~l~~~~l~lL~N~eviavnQd~~~~~~~ 391 (391)
|++||||+|+||++|++++++||+|+||||||||++++|++
T Consensus 315 m~~SPLiiG~DL~~~~~~tl~iLtN~evIAINQD~lG~~~~ 355 (357)
T PLN03231 315 VAKSPLMFGGDLRRLDNETLSLLTNPTVLEVNSHSTGNRNA 355 (357)
T ss_pred HHhCchhhcCCcccCCHHHHHHhcChHHheecCCccccccC
Confidence 99999999999999999999999999999999999999985
No 3
>PLN02229 alpha-galactosidase
Probab=100.00 E-value=7.3e-82 Score=630.69 Aligned_cols=272 Identities=30% Similarity=0.508 Sum_probs=241.6
Q ss_pred ccCCCCCCceEeeccccccccCCHHHHHHHHHH-HHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeC
Q 041825 29 ETEHAALPPRGWNSYDAFCWIISEQEFLESADI-VAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPD 107 (391)
Q Consensus 29 ~~~~~~~pPmGWnSW~~~~~~i~e~~v~~~ad~-~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d 107 (391)
++++++|||||||||+.|+|+|||+.|+++||. +++||+++||+||+|||||+... ||++|+|+||
T Consensus 56 ~ngla~tPpmGWnSWn~~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~-------------rd~~G~l~~d 122 (427)
T PLN02229 56 NNGLARTPQMGWNSWNFFACNINETVIKETADALVSTGLADLGYIHVNIDDCWSNLK-------------RDSKGQLVPD 122 (427)
T ss_pred cCCccCCCCceEEchhhhCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCC-------------cCCCCCEEEC
Confidence 478999999999999999999999999999995 58999999999999999999753 5789999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCC
Q 041825 108 PERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHG 187 (391)
Q Consensus 108 ~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~ 187 (391)
++|||+ |||+|+||||++|||||||+++|+.+|+..+ ++
T Consensus 123 ~~rFP~-----G~k~ladyiH~~GlKfGIy~d~G~~TC~~~p------------------------------------GS 161 (427)
T PLN02229 123 PKTFPS-----GIKLLADYVHSKGLKLGIYSDAGVFTCQVRP------------------------------------GS 161 (427)
T ss_pred hhhcCC-----cHHHHHHHHHHCCCceEEeccCCCcccCCCC------------------------------------CC
Confidence 999999 9999999999999999999999987765432 22
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCCCCCCCC-hHHHHHHHHHHHhccCCcEEEEeCCCCCCChh-HHHhh
Q 041825 188 FMAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCAFGDDLD-EGEIAVVSEVFKGQQNRPIIYSLSPGTSATPA-MAQKI 265 (391)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~-~~~~~~~~~Al~~~~gr~i~ls~~~~~~~~p~-~~~~~ 265 (391)
..|++.++++|++|||||||+|+|+....+ .++|.+|++||++ +||||+||+|+|+...|. |+
T Consensus 162 -----------~g~e~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~-tGRpI~~SlC~WG~~~p~~w~--- 226 (427)
T PLN02229 162 -----------LFHEVDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNA-TGRSIFYSLCEWGVDDPALWA--- 226 (427)
T ss_pred -----------ccHHHHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHh-hCCCcEEEecCCCCCCHHHHH---
Confidence 235677899999999999999999875544 4579999999999 999999999997766563 54
Q ss_pred hccccEEEecCCCCCChhhHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCHHHHHHH
Q 041825 266 NGLANMYRVTGDDWDSWPDVAAHFSVARDFAAANMTGALGLKGKSWPDLDMLPLGWLTDANSTQGPYRACKLTQDEQKTQ 345 (391)
Q Consensus 266 ~~~an~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~wnDpDml~~G~~~~~~~~~g~~~~~~lt~~E~rt~ 345 (391)
.+++|+||+++||++.|.++.++++....|+.. . +||+|||||||+||+ .+||.+|+|||
T Consensus 227 ~~~~n~WR~s~DI~d~W~sv~~i~~~~~~~~~~-----a--gPG~wnDpDML~vGn-------------~glT~~E~rth 286 (427)
T PLN02229 227 GKVGNSWRTTDDINDTWASMTTIADLNNKWAAY-----A--GPGGWNDPDMLEVGN-------------GGMTYEEYRGH 286 (427)
T ss_pred HhhcCeeeccCCcccccccHHHHHHHHHHHHhh-----c--CCCCCCCCCeeeeCC-------------CCCCHHHHHHH
Confidence 468999999999999999999999877777542 2 468999999999994 37999999999
Q ss_pred HHHHHHhcCCcccccCCCCCCHhHHhhccChhhHhhhcCCCCCC
Q 041825 346 ITLWAMAKSPLMFGGDVRKLDDTTYGLITNPTLLEIDHHSSNNK 389 (391)
Q Consensus 346 ~tlwa~~~sPL~ig~Dl~~l~~~~l~lL~N~eviavnQd~~~~~ 389 (391)
|+||||++||||+|+||++|++++++||+|+||||||||+++.|
T Consensus 287 fsLWai~~SPLiiG~DL~~m~~~tl~ILtNkEVIAINQD~lG~q 330 (427)
T PLN02229 287 FSIWALMKAPLLIGCDVRNMTAETMEILSNKEVIAVNQDPLGVQ 330 (427)
T ss_pred HHHHHHHhCceeecCCcccCCHHHHHHhcCHHHHhhcccccccC
Confidence 99999999999999999999999999999999999999987644
No 4
>PLN02692 alpha-galactosidase
Probab=100.00 E-value=2.2e-81 Score=624.73 Aligned_cols=275 Identities=29% Similarity=0.515 Sum_probs=244.9
Q ss_pred cccCCCCCCceEeeccccccccCCHHHHHHHHHH-HHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCcee
Q 041825 28 KETEHAALPPRGWNSYDAFCWIISEQEFLESADI-VAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVP 106 (391)
Q Consensus 28 ~~~~~~~~pPmGWnSW~~~~~~i~e~~v~~~ad~-~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~ 106 (391)
.++++++|||||||||+.|+++|||+.|+++|+. ++.||+++||+||+|||||+... +|+.|+|+|
T Consensus 48 ~~ngla~tPpmGWnSW~~~~~~i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~-------------rd~~G~~~~ 114 (412)
T PLN02692 48 LANGLGITPPMGWNSWNHFSCKIDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIA-------------RDEKGNLVP 114 (412)
T ss_pred ccCcCcCCCcceEEchhhhCcccCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCC-------------CCCCCCeee
Confidence 3589999999999999999999999999999995 57899999999999999999753 578999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCC
Q 041825 107 DPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPH 186 (391)
Q Consensus 107 d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~ 186 (391)
|++|||+ |||+|+||||++|||||||+++|..+| .+
T Consensus 115 d~~kFP~-----G~k~ladyiH~~GLKfGIy~d~G~~tC------------------------------------~~--- 150 (412)
T PLN02692 115 KKSTFPS-----GIKALADYVHSKGLKLGIYSDAGYFTC------------------------------------SK--- 150 (412)
T ss_pred ChhhcCC-----cHHHHHHHHHHCCCceEEEecCCcccc------------------------------------CC---
Confidence 9999999 999999999999999999999987555 22
Q ss_pred CceeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCCCCCCCCh-HHHHHHHHHHHhccCCcEEEEeCCCCCCCh-hHHHh
Q 041825 187 GFMAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCAFGDDLDE-GEIAVVSEVFKGQQNRPIIYSLSPGTSATP-AMAQK 264 (391)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~-~~~~~~~~Al~~~~gr~i~ls~~~~~~~~p-~~~~~ 264 (391)
..|+.+.|+++++++|++|||||||+|+|+.+...+ ++|++|++||++ +||||+||+|+|+...| .|+
T Consensus 151 -------~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~-tGRpI~~SlC~wg~~~p~~w~-- 220 (412)
T PLN02692 151 -------TMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALMK-AGRPIFFSLCEWGDMHPALWG-- 220 (412)
T ss_pred -------CCCCchHHHHHHHHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHHH-hCCCeEEEecCCCcCChhhhh--
Confidence 125678899999999999999999999998655443 689999999999 99999999999876555 354
Q ss_pred hhccccEEEecCCCCCChhhHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCHHHHHH
Q 041825 265 INGLANMYRVTGDDWDSWPDVAAHFSVARDFAAANMTGALGLKGKSWPDLDMLPLGWLTDANSTQGPYRACKLTQDEQKT 344 (391)
Q Consensus 265 ~~~~an~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~wnDpDml~~G~~~~~~~~~g~~~~~~lt~~E~rt 344 (391)
.+++|+||++.||++.|.++..+++....|+. +. +||+|||||||+||. .+||.+|+||
T Consensus 221 -~~~~n~WR~s~DI~d~W~sv~~~~~~~~~~~~-----~a--gPG~wnDpDML~VGn-------------~glT~~E~rT 279 (412)
T PLN02692 221 -SKVGNSWRTTNDISDTWDSMISRADMNEVYAE-----LA--RPGGWNDPDMLEVGN-------------GGMTKDEYIV 279 (412)
T ss_pred -hhcCCccccccccccchHhHHHHHHHHHHHhh-----cc--CCCCCCCCCeEeECC-------------CCCCHHHHHH
Confidence 46899999999999999999999887666643 22 468999999999994 3799999999
Q ss_pred HHHHHHHhcCCcccccCCCCCCHhHHhhccChhhHhhhcCCCCCCC
Q 041825 345 QITLWAMAKSPLMFGGDVRKLDDTTYGLITNPTLLEIDHHSSNNKE 390 (391)
Q Consensus 345 ~~tlwa~~~sPL~ig~Dl~~l~~~~l~lL~N~eviavnQd~~~~~~ 390 (391)
|||||||++||||+|+||+++++++++||+|+||||||||.++.|.
T Consensus 280 hfsLWai~~SPLiiG~DL~~~~~~~l~iLtN~evIAiNQD~lG~q~ 325 (412)
T PLN02692 280 HFSIWAISKAPLLLGCDVRNMTKETMDIVANKEVIAVNQDPLGVQA 325 (412)
T ss_pred HHHHHHHHhCcceecCCcccCCHHHHHHhcCHHHhhhccCccccCc
Confidence 9999999999999999999999999999999999999999887653
No 5
>PLN02808 alpha-galactosidase
Probab=100.00 E-value=2.1e-80 Score=616.33 Aligned_cols=274 Identities=28% Similarity=0.533 Sum_probs=244.2
Q ss_pred cccCCCCCCceEeeccccccccCCHHHHHHHHHHH-HHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCcee
Q 041825 28 KETEHAALPPRGWNSYDAFCWIISEQEFLESADIV-AKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVP 106 (391)
Q Consensus 28 ~~~~~~~~pPmGWnSW~~~~~~i~e~~v~~~ad~~-~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~ 106 (391)
.+++++++||||||||+.|+++|||+.|+++|+.| +.||+++||+||+|||||+... ||++|+|+|
T Consensus 24 ~~ngla~tPpmGWnsW~~~~~~i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~-------------rd~~G~~~~ 90 (386)
T PLN02808 24 LDNGLGLTPQMGWNSWNHFQCNINETLIKQTADAMVSSGLAALGYKYINLDDCWAELK-------------RDSQGNLVP 90 (386)
T ss_pred ccCcccCCCcceEEchHHHCCCCCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCC-------------cCCCCCEee
Confidence 45799999999999999999999999999999976 7899999999999999999753 578999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCC
Q 041825 107 DPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPH 186 (391)
Q Consensus 107 d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~ 186 (391)
|++|||+ |||+|+||||++|||||||+++|..+| .+
T Consensus 91 d~~rFP~-----G~~~lad~iH~~GlkfGiy~~~G~~tC------------------------------------~~--- 126 (386)
T PLN02808 91 KASTFPS-----GIKALADYVHSKGLKLGIYSDAGTLTC------------------------------------SK--- 126 (386)
T ss_pred ChhhcCc-----cHHHHHHHHHHCCCceEEEecCCcccc------------------------------------CC---
Confidence 9999999 999999999999999999999986555 22
Q ss_pred CceeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCCCCCCCC-hHHHHHHHHHHHhccCCcEEEEeCCCCCCCh-hHHHh
Q 041825 187 GFMAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCAFGDDLD-EGEIAVVSEVFKGQQNRPIIYSLSPGTSATP-AMAQK 264 (391)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~-~~~~~~~~~Al~~~~gr~i~ls~~~~~~~~p-~~~~~ 264 (391)
.+|+++.|+++++++|++|||||||+|+|+.+..+ .++|.+|++||++ +||||+||+|+|+...| .|+
T Consensus 127 -------~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~-tGRpi~~slc~wg~~~p~~w~-- 196 (386)
T PLN02808 127 -------TMPGSLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLN-SGRPIFFSLCEWGQEDPATWA-- 196 (386)
T ss_pred -------CCCcchHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHH-hCCCeEEEecCCCCCCHHHHH--
Confidence 13567889999999999999999999999865443 4579999999999 99999999998765556 565
Q ss_pred hhccccEEEecCCCCCChhhHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCHHHHHH
Q 041825 265 INGLANMYRVTGDDWDSWPDVAAHFSVARDFAAANMTGALGLKGKSWPDLDMLPLGWLTDANSTQGPYRACKLTQDEQKT 344 (391)
Q Consensus 265 ~~~~an~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~wnDpDml~~G~~~~~~~~~g~~~~~~lt~~E~rt 344 (391)
.+++|+||++.||++.|.++.++++....|+. +. +||+|||||||+||. .+||.+|+||
T Consensus 197 -~~~~n~WR~s~Di~d~W~~v~~~~~~~~~~~~-----~a--gPG~wnDpDML~vGn-------------~glt~~E~rt 255 (386)
T PLN02808 197 -GDIGNSWRTTGDIQDNWDSMTSRADQNDRWAS-----YA--RPGGWNDPDMLEVGN-------------GGMTTEEYRS 255 (386)
T ss_pred -HhhcCcccccCCcccchhhHHHHHHhhhhhHh-----hc--CCCCCCCCCeeeECC-------------CCCCHHHHHH
Confidence 46899999999999999999999887766653 22 468999999999994 3799999999
Q ss_pred HHHHHHHhcCCcccccCCCCCCHhHHhhccChhhHhhhcCCCCCC
Q 041825 345 QITLWAMAKSPLMFGGDVRKLDDTTYGLITNPTLLEIDHHSSNNK 389 (391)
Q Consensus 345 ~~tlwa~~~sPL~ig~Dl~~l~~~~l~lL~N~eviavnQd~~~~~ 389 (391)
||+||||++||||||+||++|++++++||+|+||||||||.++.+
T Consensus 256 hfsLWam~~SPLiiG~DL~~~~~~~l~iLtNkevIAINQD~lG~~ 300 (386)
T PLN02808 256 HFSIWALAKAPLLIGCDIRSMDNETFELLSNKEVIAVNQDKLGVQ 300 (386)
T ss_pred HHHHHHHHhCcceecCCcCcCCHHHHHHhcCHHHHhhcCCccccC
Confidence 999999999999999999999999999999999999999987654
No 6
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-68 Score=512.94 Aligned_cols=282 Identities=31% Similarity=0.522 Sum_probs=241.7
Q ss_pred ccccccCCCCCCceEeeccccccccCC----------HHHHHHHHHHH-HHhhccCCceEEEecccccccccCCcccCCC
Q 041825 25 AADKETEHAALPPRGWNSYDAFCWIIS----------EQEFLESADIV-AKRLLPHGYEYVVVDYLWYRKKVKGAHIDSE 93 (391)
Q Consensus 25 ~~~~~~~~~~~pPmGWnSW~~~~~~i~----------e~~v~~~ad~~-~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~ 93 (391)
+-...||++++|||||+||+.|.|+++ |+.++++||.| ++|+++.||+||+|||||....
T Consensus 22 ~~~l~NGLg~tP~MGw~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~~~vGY~yi~iDDCW~e~~--------- 92 (414)
T KOG2366|consen 22 RMSLNNGLGRTPQMGWNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGLADVGYEYINIDDCWSEVT--------- 92 (414)
T ss_pred heeeccccccCCCcccccccceeeecccccCCccchhHHHHHHHHHHHHHhHHHhcCcEEEechhhhhhhc---------
Confidence 334568999999999999999999877 99999999976 6899999999999999999864
Q ss_pred CccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhh
Q 041825 94 GIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQD 173 (391)
Q Consensus 94 ~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~d 173 (391)
||..|+++++++|||+ |+++|++|+|++|||||||.+.|..+|+.
T Consensus 93 ----Rd~~grLva~~~rFP~-----Gi~~ladyvHs~GLKlGiYsD~G~~TC~g-------------------------- 137 (414)
T KOG2366|consen 93 ----RDSDGRLVADPSRFPS-----GIKALADYVHSKGLKLGIYSDAGNFTCAG-------------------------- 137 (414)
T ss_pred ----cCCccccccChhhccc-----chhhhhhchhhcCCceeeeeccCchhhcc--------------------------
Confidence 6889999999999999 99999999999999999999987655533
Q ss_pred ccccCCCCccCCCCceeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCCCCCCCC-hHHHHHHHHHHHhccCCcEEEEeC
Q 041825 174 IAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCAFGDDLD-EGEIAVVSEVFKGQQNRPIIYSLS 252 (391)
Q Consensus 174 i~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~-~~~~~~~~~Al~~~~gr~i~ls~~ 252 (391)
+ |+.+.|++.++++|++|||||+|+|.|+..... ++.|..|++||++ +||||+||+|
T Consensus 138 ----------~-----------PGS~~~e~~DA~tFA~WgvDylKlD~C~~~~~~~~~~Yp~ms~aLN~-tGrpi~ySlC 195 (414)
T KOG2366|consen 138 ----------Y-----------PGSLGHEESDAKTFADWGVDYLKLDGCFNNLITMPEGYPIMSRALNN-TGRPIFYSLC 195 (414)
T ss_pred ----------C-----------CcccchhhhhhhhhHhhCCcEEeccccccccccccccchhHHHHHhc-cCCceEEEec
Confidence 3 334557788899999999999999999875543 5789999999999 9999999988
Q ss_pred CCCCCC------hhHHHhhhccccEEEecCCCCCChhhHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCcccccccCCC
Q 041825 253 PGTSAT------PAMAQKINGLANMYRVTGDDWDSWPDVAAHFSVARDFAAANMTGALGLKGKSWPDLDMLPLGWLTDAN 326 (391)
Q Consensus 253 ~~~~~~------p~~~~~~~~~an~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~wnDpDml~~G~~~~~~ 326 (391)
.|+... |++ +.+..++|+||+.+||.++|.++..+++.+ .|.+....... +|++|||||||++|+
T Consensus 196 ~W~~~~~~~~~~pny-~~i~~~~N~WR~~dDI~dtW~Sv~~I~d~~-~~nqd~~~~~a--gPg~WNDpDmL~iGN----- 266 (414)
T KOG2366|consen 196 SWPAYHPGLPHHPNY-KNISTICNSWRTTDDIQDTWKSVDSIIDYI-CWNQDRIAPLA--GPGGWNDPDMLEIGN----- 266 (414)
T ss_pred cCcccccCccCCCcc-hhhhhhhccccchhhhhhHHHHHHHHHHHH-hhhhhhhcccc--CCCCCCChhHhhcCC-----
Confidence 755322 222 345679999999999999999999887743 33222222233 468999999999994
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcccccCCCCCCHhHHhhccChhhHhhhcCCCCCC
Q 041825 327 STQGPYRACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTYGLITNPTLLEIDHHSSNNK 389 (391)
Q Consensus 327 ~~~g~~~~~~lt~~E~rt~~tlwa~~~sPL~ig~Dl~~l~~~~l~lL~N~eviavnQd~~~~~ 389 (391)
.++|.+|+++||++||++++||++|+|++.++++..++|+|||+|+||||.++-|
T Consensus 267 --------~G~s~e~y~~qf~lWai~kAPLlms~Dlr~is~~~~~il~nk~~IaiNQDplgiq 321 (414)
T KOG2366|consen 267 --------GGMSYEEYKGQFALWAILKAPLLMSNDLRLISKQTKEILQNKEVIAINQDPLGIQ 321 (414)
T ss_pred --------CCccHHHHHHHHHHHHHhhchhhhccchhhcCHHHHHHhcChhheeccCCccchh
Confidence 4899999999999999999999999999999999999999999999999988754
No 7
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=100.00 E-value=1.5e-35 Score=297.97 Aligned_cols=209 Identities=21% Similarity=0.406 Sum_probs=144.7
Q ss_pred CCCCCCceEeeccccccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCC
Q 041825 31 EHAALPPRGWNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPER 110 (391)
Q Consensus 31 ~~~~~pPmGWnSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~k 110 (391)
...++||||||||+++++++||+.+++.++. ++++||++|+|||||+..+.. ..+..|+|++|++|
T Consensus 36 ~~~~~~pv~~nsW~~~~~d~~e~~i~~~a~~----~~~~G~e~fviDDGW~~~r~~----------d~~~~GdW~~~~~k 101 (394)
T PF02065_consen 36 WRDKPPPVGWNSWEAYYFDITEEKILELADA----AAELGYEYFVIDDGWFGGRDD----------DNAGLGDWEPDPKK 101 (394)
T ss_dssp TTTSS--EEEESHHHHTTG--HHHHHHHHHH----HHHHT-SEEEE-SSSBCTEST----------TTSTTSBECBBTTT
T ss_pred cCCCCCceEEEcccccCcCCCHHHHHHHHHH----HHHhCCEEEEEcCccccccCC----------CcccCCceeEChhh
Confidence 4567899999999999999999999999985 467899999999999986421 12457999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCcee
Q 041825 111 WPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMA 190 (391)
Q Consensus 111 FP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~ 190 (391)
||+ ||++|+++||++|||||||++|+. +.++|.++.+ +++|..+.-... ... ..+.++
T Consensus 102 FP~-----Gl~~l~~~i~~~Gmk~GlW~ePe~----v~~~S~l~~~---------hPdw~l~~~~~~-~~~---~r~~~v 159 (394)
T PF02065_consen 102 FPN-----GLKPLADYIHSLGMKFGLWFEPEM----VSPDSDLYRE---------HPDWVLRDPGRP-PTL---GRNQYV 159 (394)
T ss_dssp STT-----HHHHHHHHHHHTT-EEEEEEETTE----EESSSCHCCS---------SBGGBTCCTTSE--EC---BTTBEE
T ss_pred hCC-----cHHHHHHHHHHCCCeEEEEecccc----ccchhHHHHh---------CccceeecCCCC-CcC---cccceE
Confidence 999 999999999999999999999964 6778887754 456655421111 111 124689
Q ss_pred ecCCcHHHHHHHHHHH-HHHHhhCCcEEeecCCCC--C----CCC--hHHHH----HHHHHHHhccCCcEEEEeCCCCCC
Q 041825 191 VNTKLGAGKAFLRSLH-KQYADWGVDFVKHDCAFG--D----DLD--EGEIA----VVSEVFKGQQNRPIIYSLSPGTSA 257 (391)
Q Consensus 191 lD~t~p~~~~~~~~~~-~~~a~wGvdylK~D~~~~--~----~~~--~~~~~----~~~~Al~~~~gr~i~ls~~~~~~~ 257 (391)
||+++|++++|+.+.+ +.+++|||||||+|++.. . ... ..+|. .+.++|++ ...+|+++.|.++..
T Consensus 160 LD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~-~~P~v~iE~CssGG~ 238 (394)
T PF02065_consen 160 LDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRA-RFPDVLIENCSSGGG 238 (394)
T ss_dssp B-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHH-HTTTSEEEE-BTTBT
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHH-hCCCcEEEeccCCCC
Confidence 9999999999987766 457999999999999743 1 111 12333 36778888 888999999974421
Q ss_pred ChhHHHhhhccccEEEecCCC
Q 041825 258 TPAMAQKINGLANMYRVTGDD 278 (391)
Q Consensus 258 ~p~~~~~~~~~an~~Ris~D~ 278 (391)
.-.++ +-.+.+..-+|+++
T Consensus 239 R~D~g--~l~~~~~~w~SD~t 257 (394)
T PF02065_consen 239 RFDPG--MLYYTPQSWTSDNT 257 (394)
T ss_dssp TTSHH--HHCCSSEEESBST-
T ss_pred ccccc--hheeccccccCCcc
Confidence 11222 12467777788654
No 8
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=2e-24 Score=217.66 Aligned_cols=171 Identities=21% Similarity=0.398 Sum_probs=134.9
Q ss_pred CCCCCCceEeeccccccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCC
Q 041825 31 EHAALPPRGWNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPER 110 (391)
Q Consensus 31 ~~~~~pPmGWnSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~k 110 (391)
-+.+..|||||||++||.++++++++++++. .++.|.+.|+|||||+..+.+ + .-..|+|.++.+|
T Consensus 287 ~~~kprPi~~nsWea~Yfd~t~e~ile~vk~----akk~gvE~FvlDDGwfg~rnd----d------~~slGDWlv~seK 352 (687)
T COG3345 287 RVKKPRPIGWNSWEAYYFDFTEEEILENVKE----AKKFGVELFVLDDGWFGGRND----D------LKSLGDWLVNSEK 352 (687)
T ss_pred ccCCCCcceeeceeeeeecCCHHHHHHHHHH----HhhcCeEEEEEccccccccCc----c------hhhhhceecchhh
Confidence 3445569999999999999999999999984 678899999999999975432 1 2357999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCc------cC
Q 041825 111 WPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCA------WM 184 (391)
Q Consensus 111 FP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~------~~ 184 (391)
||+ |+..|+..||+.||+||||++|++ +.+.|.+++. +|+|..+. ...+.... |.
T Consensus 353 fPs-----giE~li~~I~e~Gl~fGIWlePem----vs~dSdlfrq---------HPDWvvk~-~G~p~~~~Rnqyvl~~ 413 (687)
T COG3345 353 FPS-----GIEELIEAIAENGLIFGIWLEPEM----VSEDSDLFRQ---------HPDWVVKV-NGYPLMAGRNQYVLWL 413 (687)
T ss_pred ccc-----cHHHHHHHHHHcCCccceeecchh----cccchHHHhh---------CCCeEEec-CCccccccccchhhhc
Confidence 999 999999999999999999999975 5567777654 66776662 22222211 33
Q ss_pred CCCceeecCCcHHHHHHHHHHHHHHH-hhCCcEEeecCCCCCCCChHHHHH
Q 041825 185 PHGFMAVNTKLGAGKAFLRSLHKQYA-DWGVDFVKHDCAFGDDLDEGEIAV 234 (391)
Q Consensus 185 ~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~~~~~~~~~ 234 (391)
....+++|.+++.++.++...++.++ +||..++|+|+.+...+..++|..
T Consensus 414 s~p~vv~~l~~~l~qll~~~~v~ylkwdmnr~l~klg~~~~~~l~qqry~l 464 (687)
T COG3345 414 SNPIVVLDLSEDLVQLLLFHLVSYLKWDMNRELFKLGFLFWGALPQQRYQL 464 (687)
T ss_pred cChHHHHHhhhHHHHHHHhhhHHHHHHHhCcceeecCCCCCccccchHHHH
Confidence 33457788888888888888889998 899999999998876666666443
No 9
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=99.85 E-value=9.5e-20 Score=191.64 Aligned_cols=295 Identities=16% Similarity=0.172 Sum_probs=175.1
Q ss_pred CCCc-----eEeeccccccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccC--CcccC-CCCccccCCCCCce
Q 041825 34 ALPP-----RGWNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVK--GAHID-SEGIDLIDEWGRMV 105 (391)
Q Consensus 34 ~~pP-----mGWnSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~--g~~~~-~~~~~~~d~~G~~~ 105 (391)
++.| .|||||++||.+|||+.|++.++.++++-.+ .++|+||||||....+ +..+. ..+.+.....-++.
T Consensus 196 K~~P~~ld~~GWCTW~afy~~Vt~~~I~~~l~~l~~~g~p--~~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~f~ 273 (758)
T PLN02355 196 KKMPDMLNWFGWCTWDAFYTNVTAEGVKQGLESLEKGGVT--PKFVIIDDGWQSVGMDPTGIECLADNSANFANRLTHIK 273 (758)
T ss_pred ccCCcccceeeEEehhHhhccCCHHHHHHHHHHHHhCCCC--ccEEEEeccccccccccccccccccccchhhhhhcccc
Confidence 3567 8999999999999999999999988665333 3799999999985321 10000 00000011123456
Q ss_pred eCCCCCCCC-C-------CCCCHHHHHHHHHH-cCCe-EEEEeecCcchhhccCCccccccCC-CCCCcccCccchhhhc
Q 041825 106 PDPERWPSS-K-------GGKGFTEIAKKVHD-IGLK-FGIHVMKGISTQAVNANTLIYDYDK-GGPYMEAGRQWRAQDI 174 (391)
Q Consensus 106 ~d~~kFP~~-~-------~~~G~k~lad~ih~-~Glk-~Giy~~pg~~~~a~~~~s~i~~~~~-~~~~~~~g~~~~~~di 174 (391)
.|+ |||.- . .+.|||.+++.||+ .|+| +|+|.+-.-.+-.+.++.+...... -..|...-+...
T Consensus 274 ~n~-KF~~~~~~~~~~~~~~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spGv~---- 348 (758)
T PLN02355 274 ENH-KFQKNGKEGHRVDDPALGLGHIVTEIKEKHSLKYVYVWHAITGYWGGVKPGVAGMEHYESKMSYPVSSPGVQ---- 348 (758)
T ss_pred ccc-cccccccccccccCCCCcHHHHHHHHHhhcCCcEEEEeeeecceecCcCCCCcccccccccccccccCCccc----
Confidence 664 88831 0 02499999999997 7888 5999875333333444443221100 001110000000
Q ss_pred cccCCCCc-c---CCCCceeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCCCC-----CCC-C-hHHHHHHHHHHHh--
Q 041825 175 AIKEKPCA-W---MPHGFMAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCAFG-----DDL-D-EGEIAVVSEVFKG-- 241 (391)
Q Consensus 175 ~~~~~~c~-~---~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~-~~~~~~~~~Al~~-- 241 (391)
...+|. + .+++...+|+ ..+..||+.....+++-|||+||+|...- ... . .+-.+++++||.+
T Consensus 349 --~~~~~~a~d~i~~~G~glv~P--e~~~~FY~~~hsyL~s~GVDgVKVD~Q~~le~l~~g~ggrv~la~~y~~ALe~S~ 424 (758)
T PLN02355 349 --SNEPCDALESITTNGLGLVNP--EKVFSFYNELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASI 424 (758)
T ss_pred --ccCcchhhhhcccCceeccCH--HHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 001111 0 0122333443 34788999999999999999999997431 111 1 1222345555543
Q ss_pred --cc-CCcEEEEeCCCCCCChhHHHhhhccccEEEecCCCCCChhhHHH--HHH-HHHHHHHhhhhcccCCCCCCCCCCC
Q 041825 242 --QQ-NRPIIYSLSPGTSATPAMAQKINGLANMYRVTGDDWDSWPDVAA--HFS-VARDFAAANMTGALGLKGKSWPDLD 315 (391)
Q Consensus 242 --~~-gr~i~ls~~~~~~~~p~~~~~~~~~an~~Ris~D~~~~W~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~wnDpD 315 (391)
.. ++-++-|+|..+.. ... .+.....|+|+|-++.+..... ++. .+..... +..-|+|-|
T Consensus 425 ~r~F~~ngvI~CMs~~~d~---i~~--~k~sav~R~SDDF~P~dP~sh~~Hi~~~AyNSLll---------g~~v~PDWD 490 (758)
T PLN02355 425 ARNFPDNGIISCMSHNTDG---LYS--AKRTAVIRASDDFWPRDPASHTIHIASVAYNTIFL---------GEFMQPDWD 490 (758)
T ss_pred HHhCCCCceEEecccCchh---hcc--cccceeeeeccccccCCCccCchhhhhhhhhhhhh---------ccccccCcc
Confidence 12 56678777763321 111 2467899999999988764322 222 2222211 235689999
Q ss_pred CcccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcccccCCCCCCHhHHh
Q 041825 316 MLPLGWLTDANSTQGPYRACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTYG 371 (391)
Q Consensus 316 ml~~G~~~~~~~~~g~~~~~~lt~~E~rt~~tlwa~~~sPL~ig~Dl~~l~~~~l~ 371 (391)
|+..-. .-.+.|....|++|+|++|||.+-+-+-+.|.
T Consensus 491 MF~S~h------------------p~A~~HAaaRAisGGPIYvSD~PG~hdf~LLk 528 (758)
T PLN02355 491 MFHSLH------------------PMAEYHAAARAVGGCAIYVSDKPGQHDFNLLK 528 (758)
T ss_pred cceecC------------------ccHHHHHHHHhccCCcEEEecCCCCccHHHHH
Confidence 996442 23579999999999999999998877655554
No 10
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.84 E-value=2.5e-19 Score=175.58 Aligned_cols=202 Identities=16% Similarity=0.204 Sum_probs=139.2
Q ss_pred CCCceEeeccccccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCC
Q 041825 34 ALPPRGWNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPS 113 (391)
Q Consensus 34 ~~pPmGWnSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~ 113 (391)
.++|+ ||||+.++..+||++|++.++.+++. ...+++|+||++|+. .+|+++.|++|||+
T Consensus 12 ~~~p~-W~~W~~~~~~~s~~~v~~~~~~~~~~--~iP~d~i~iD~~w~~-----------------~~g~f~~d~~~FPd 71 (303)
T cd06592 12 FRSPI-WSTWARYKADINQETVLNYAQEIIDN--GFPNGQIEIDDNWET-----------------CYGDFDFDPTKFPD 71 (303)
T ss_pred hCCCc-cCChhhhccCcCHHHHHHHHHHHHHc--CCCCCeEEeCCCccc-----------------cCCccccChhhCCC
Confidence 68888 99999999999999999999965431 234789999999985 36899999999996
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccc-cCCCCccCCCCceeec
Q 041825 114 SKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAI-KEKPCAWMPHGFMAVN 192 (391)
Q Consensus 114 ~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~-~~~~c~~~~~~~~~lD 192 (391)
+++++++||++|+|++||+.|++.. +++.+.+.. ...+..++... .+..-.|.++..+.+|
T Consensus 72 ------p~~mi~~l~~~G~k~~l~i~P~i~~-----~s~~~~e~~-------~~g~~vk~~~g~~~~~~~~w~g~~~~~D 133 (303)
T cd06592 72 ------PKGMIDQLHDLGFRVTLWVHPFINT-----DSENFREAV-------EKGYLVSEPSGDIPALTRWWNGTAAVLD 133 (303)
T ss_pred ------HHHHHHHHHHCCCeEEEEECCeeCC-----CCHHHHhhh-------hCCeEEECCCCCCCcccceecCCcceEe
Confidence 9999999999999999999998742 333332210 01111122111 1111234455667899
Q ss_pred CCcHHHHHHHHHHHHHHH-hhCCcEEeecCCCCCC-----------CChHHHH-HHHHHHHhccCCcEEEEeCCCCCCCh
Q 041825 193 TKLGAGKAFLRSLHKQYA-DWGVDFVKHDCAFGDD-----------LDEGEIA-VVSEVFKGQQNRPIIYSLSPGTSATP 259 (391)
Q Consensus 193 ~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~-----------~~~~~~~-~~~~Al~~~~gr~i~ls~~~~~~~~p 259 (391)
+|||+|++|+.+.++.+. ++|||++|+|++-+.. ..+..|. .+.++..+ .+ |++++=|....
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~p~~~~~~~~~~~~n~y~~~~~~~~~~-~~-~~~~~Rsg~~g--- 208 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEASYLPQDYVTEDPLLNPDEYTRLYAEMVAE-FG-DLIEVRAGWRS--- 208 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCcccCCcccccCCcccCHHHHHHHHHHHHHh-hc-cceEEEeeeec---
Confidence 999999999988887765 9999999999865311 1123443 45555555 44 66665442111
Q ss_pred hHHHhhhccccEEEecCCCCCChhhH
Q 041825 260 AMAQKINGLANMYRVTGDDWDSWPDV 285 (391)
Q Consensus 260 ~~~~~~~~~an~~Ris~D~~~~W~~~ 285 (391)
.+..+-.| ++|...+|+..
T Consensus 209 -----~~~~~~~w--~GD~~s~W~~~ 227 (303)
T cd06592 209 -----QGLPLFVR--MMDKDSSWGGD 227 (303)
T ss_pred -----CCCCeeEE--cCCCCCCCCCC
Confidence 01123334 67998999876
No 11
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=99.83 E-value=3.1e-19 Score=187.49 Aligned_cols=305 Identities=15% Similarity=0.132 Sum_probs=179.2
Q ss_pred CCCCc-----eEeeccccccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcc--cC-CCCccccCCCCCc
Q 041825 33 AALPP-----RGWNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAH--ID-SEGIDLIDEWGRM 104 (391)
Q Consensus 33 ~~~pP-----mGWnSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~--~~-~~~~~~~d~~G~~ 104 (391)
-++.| .|||||++||.+|||+.|++.++.|+++-.+ .++|+||||||.....+.. +. ..|...--..-++
T Consensus 191 ~K~~p~~~D~~GWCTWdafy~dVt~~~I~~~l~~l~e~gip--~~~viIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~f 268 (775)
T PLN02219 191 KKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTP--PKFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTGI 268 (775)
T ss_pred cccCccccceeeEEEhhHhhccCCHHHHHHHHHHHHhCCCC--ceEEEEccCccccccccccccccccccchhhhhhccc
Confidence 45677 8999999999999999999999987654333 4799999999986432210 00 0000000012234
Q ss_pred eeCCC--------CCCCCCCCCCHHHHHHHHHH-cCCe-EEEEeecCcchhhccCCccccccCC-CCCCccc--Cccchh
Q 041825 105 VPDPE--------RWPSSKGGKGFTEIAKKVHD-IGLK-FGIHVMKGISTQAVNANTLIYDYDK-GGPYMEA--GRQWRA 171 (391)
Q Consensus 105 ~~d~~--------kFP~~~~~~G~k~lad~ih~-~Glk-~Giy~~pg~~~~a~~~~s~i~~~~~-~~~~~~~--g~~~~~ 171 (391)
..|++ .||. |||.+++.||+ .|+| +|+|.+-.-.+-.+.++.+...... -..|... |..=..
T Consensus 269 ~en~KF~~~~~~~~fp~-----Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spg~~~~~ 343 (775)
T PLN02219 269 KENAKFQKNDQKNEQVS-----GLKHVVDDAKQRHNVKQVYVWHALAGYWGGVKPAAAGMEHYDSALAYPVQSPGVLGNQ 343 (775)
T ss_pred cccccccccccccCCCC-----cHHHHHHHHHhccCCcEEEEeeeccceecCcCCCCcccccccccccccccCCCccccC
Confidence 44432 4787 99999999996 7888 5999865333333444433221100 0011100 000000
Q ss_pred hhccccCCCCccCCCCceeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCCCC-----CCC-C-hHHHHHHHHHHHh---
Q 041825 172 QDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCAFG-----DDL-D-EGEIAVVSEVFKG--- 241 (391)
Q Consensus 172 ~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~-~~~~~~~~~Al~~--- 241 (391)
.|+... .-..++...+|+ +.+..||+.+.+.+++-|||+||+|...- ... . .+-.+++++||.+
T Consensus 344 pd~a~d----~l~~~G~glV~P--~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggrv~la~~y~~ALe~S~~ 417 (775)
T PLN02219 344 PDIVMD----SLSVHGLGLVNP--KKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYQQALEASIA 417 (775)
T ss_pred cchhhh----hhhhCCccccCH--HHHHHHHHHHHHHHHHcCCCEEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHH
Confidence 000000 001123345554 46789999999999999999999997431 111 1 1223345555544
Q ss_pred -cc-CCcEEEEeCCCCCCChhHHHhhhccccEEEecCCCCCChhhHHH--HH-HHHHHHHHhhhhcccCCCCCCCCCCCC
Q 041825 242 -QQ-NRPIIYSLSPGTSATPAMAQKINGLANMYRVTGDDWDSWPDVAA--HF-SVARDFAAANMTGALGLKGKSWPDLDM 316 (391)
Q Consensus 242 -~~-gr~i~ls~~~~~~~~p~~~~~~~~~an~~Ris~D~~~~W~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~wnDpDm 316 (391)
.. ++.++-|+|..+. .... .+.....|+|+|-++.+..... ++ +.+..... +..-|+|-||
T Consensus 418 r~F~~ng~I~CMsh~~d---~i~~--~k~sav~R~SDDF~P~dP~sh~~Hi~~nAyNSLll---------g~~v~PDWDM 483 (775)
T PLN02219 418 RNFTDNGCISCMCHNTD---GLYS--AKQTAVVRASDDFYPRDPASHTIHISSVAYNTLFL---------GEFMQPDWDM 483 (775)
T ss_pred HhCCCCCeEEecccCch---hhhc--ccccceeecccccccCCCccCcchhhhhhhhhHHh---------ccccccCchh
Confidence 12 5568888876332 1111 3567899999999987754322 22 22222211 2346899999
Q ss_pred cccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcccccCCCCCCHhHHhhc--cChhhHhhh
Q 041825 317 LPLGWLTDANSTQGPYRACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTYGLI--TNPTLLEID 382 (391)
Q Consensus 317 l~~G~~~~~~~~~g~~~~~~lt~~E~rt~~tlwa~~~sPL~ig~Dl~~l~~~~l~lL--~N~eviavn 382 (391)
+..-. .-.+.|....|++|+|++|||.+-+-+-+.|.=| .+-.|+...
T Consensus 484 FqS~H------------------p~A~~HAaaRAiSGGPIYvSD~PG~Hdf~LLk~LvlpDGsIlR~~ 533 (775)
T PLN02219 484 FHSLH------------------PAAEYHGAARAVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAQ 533 (775)
T ss_pred ceecC------------------ccHHHHHHHHhhcCCcEEEecCCCCccHHHHHHhhCCCCceeccc
Confidence 96542 2338999999999999999999887766555433 333444433
No 12
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=99.82 E-value=7.8e-19 Score=184.30 Aligned_cols=293 Identities=17% Similarity=0.123 Sum_probs=173.8
Q ss_pred eEeeccccccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccc--CCCCccccCCCCCceeCCCCCCCCC
Q 041825 38 RGWNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHI--DSEGIDLIDEWGRMVPDPERWPSSK 115 (391)
Q Consensus 38 mGWnSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~--~~~~~~~~d~~G~~~~d~~kFP~~~ 115 (391)
.|||||++||.+|||+.|++.++.++++-.+ .++|+||||||....++... ...+.......-++..| .|||...
T Consensus 204 fGWCTWdafy~dVt~~~I~~~l~~l~~~g~p--~~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~en-~KF~~~~ 280 (750)
T PLN02684 204 FGWCTWDAFYQEVTQEGVEAGLKSLAAGGTP--PKFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKEN-EKFKKKD 280 (750)
T ss_pred eeEEEhhHhhccCCHHHHHHHHHHHHhCCCC--ceEEEEecccccccccccccccccccchhhhhhccCccc-ccccccc
Confidence 6999999999999999999999987665333 37999999999865322100 00000000012234455 6787422
Q ss_pred CC-CCHHHHHHHHH-HcCCe-EEEEeecCcchhhccCCccccccCCC-CCCcc--cCccchhhhccccCCCCccCCCCce
Q 041825 116 GG-KGFTEIAKKVH-DIGLK-FGIHVMKGISTQAVNANTLIYDYDKG-GPYME--AGRQWRAQDIAIKEKPCAWMPHGFM 189 (391)
Q Consensus 116 ~~-~G~k~lad~ih-~~Glk-~Giy~~pg~~~~a~~~~s~i~~~~~~-~~~~~--~g~~~~~~di~~~~~~c~~~~~~~~ 189 (391)
.. .|||.+++.|+ +.|+| +|+|.+-.-.+-.+.++.+...+... -.|.. .|-.-+..|+..... ..++..
T Consensus 281 ~p~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~s~~~~p~~s~gv~~~~p~~~~d~l----~~~g~g 356 (750)
T PLN02684 281 DPNVGIKNIVNIAKEKHGLKYVYVWHAITGYWGGVRPGVKEMEEYGSVMKYPNVSKGVVENDPTWKTDVM----TLQGLG 356 (750)
T ss_pred CCCccHHHHHHHHHhhcCCcEEEEEeeecccccccCCCCcchhhccccccccccCccccccCcccccccc----ccCccc
Confidence 21 49999999998 67888 59998754334444555543321110 01110 000000011100000 012233
Q ss_pred eecCCcHHHHHHHHHHHHHHHhhCCcEEeecCCCC-----CCC-C-hHHHHHHHHHHHh----cc-CCcEEEEeCCCCCC
Q 041825 190 AVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCAFG-----DDL-D-EGEIAVVSEVFKG----QQ-NRPIIYSLSPGTSA 257 (391)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~-~~~~~~~~~Al~~----~~-gr~i~ls~~~~~~~ 257 (391)
.+++ ..+..||+.....+++-|||+||+|...- ... . .+-.++.++||.+ .. ++-++-|+|..+..
T Consensus 357 lv~P--~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~le~l~~~~ggrv~l~~ay~~ALe~S~~r~F~~ngvI~CMs~~~d~ 434 (750)
T PLN02684 357 LVNP--KKVYKFYNELHSYLADAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHNTDA 434 (750)
T ss_pred ccCH--HHHHHHHHHHHHHHHHcCCCeEEEChhhhHHHhhcccCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecccCchh
Confidence 4454 34788999999999999999999997531 111 1 1223345556553 12 34477777763321
Q ss_pred ChhHHHhhhccccEEEecCCCCCChhhHHH--HHH-HHHHHHHhhhhcccCCCCCCCCCCCCcccccccCCCCCCCCCCC
Q 041825 258 TPAMAQKINGLANMYRVTGDDWDSWPDVAA--HFS-VARDFAAANMTGALGLKGKSWPDLDMLPLGWLTDANSTQGPYRA 334 (391)
Q Consensus 258 ~p~~~~~~~~~an~~Ris~D~~~~W~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~wnDpDml~~G~~~~~~~~~g~~~~ 334 (391)
-+. .+.....|+|+|-++.+..... ++. .+..... +..-|+|-||+..-.
T Consensus 435 --i~~---sk~sav~R~SDDF~p~dP~sh~~Hi~~~AyNSLll---------g~~v~PDWDMFqS~h------------- 487 (750)
T PLN02684 435 --LYC---SKQTAVVRASDDFYPRDPVSHTIHIAAVAYNSVFL---------GEFMQPDWDMFHSLH------------- 487 (750)
T ss_pred --hhc---ccccceeeeccccccCCCccchhhhhhhhhhhhhh---------ccccccCcccceecC-------------
Confidence 121 2467899999999987654322 222 2222211 234689999996542
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcccccCCCCCCHhHHh
Q 041825 335 CKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTYG 371 (391)
Q Consensus 335 ~~lt~~E~rt~~tlwa~~~sPL~ig~Dl~~l~~~~l~ 371 (391)
.-.+.|....|++|+|++|||.+-+-+-+.|.
T Consensus 488 -----p~A~~HAaaRAisGGPIYvSD~PG~Hdf~LLk 519 (750)
T PLN02684 488 -----PAAEYHASARAISGGPLYVSDAPGKHNFELLK 519 (750)
T ss_pred -----ccHHHHHHHHhhcCCceEEecCCCCccHHHHH
Confidence 23489999999999999999988876655554
No 13
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=99.80 E-value=2e-18 Score=182.75 Aligned_cols=303 Identities=19% Similarity=0.249 Sum_probs=174.5
Q ss_pred eEeeccccccccCCHHHHHHHHHHHHH-hhccCCceEEEecccccccccCCccc--C-----CCCcc------ccCCCCC
Q 041825 38 RGWNSYDAFCWIISEQEFLESADIVAK-RLLPHGYEYVVVDYLWYRKKVKGAHI--D-----SEGID------LIDEWGR 103 (391)
Q Consensus 38 mGWnSW~~~~~~i~e~~v~~~ad~~~~-~l~~~Gy~~v~IDdgW~~~~~~g~~~--~-----~~~~~------~~d~~G~ 103 (391)
.|||||++|+.++|++.|++-++.+++ ++. -.+++||||||.-..++... + ..|.. .+++..+
T Consensus 197 lGwCTWdaf~~~v~~~~i~~~l~~L~~~gi~---~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~rl~~~~en~k 273 (747)
T PF05691_consen 197 LGWCTWDAFYQDVTEEGILEGLKSLEEGGIP---PRFVIIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPRRLTDFKENSK 273 (747)
T ss_pred hccccHHHhccccCHHHHHHHHHHHHhCCCC---ceEEEEecchhcccccCcccccccccccccccccchhhhhhhhhhh
Confidence 699999999999999999999986643 444 36999999999865433210 0 00000 0111122
Q ss_pred ceeC-----CCCCCCCCCCCCHHHHHHHHHHc--CCe-EEEEeecCcchhhccCCccccccCCCCCCcc--cCccchhhh
Q 041825 104 MVPD-----PERWPSSKGGKGFTEIAKKVHDI--GLK-FGIHVMKGISTQAVNANTLIYDYDKGGPYME--AGRQWRAQD 173 (391)
Q Consensus 104 ~~~d-----~~kFP~~~~~~G~k~lad~ih~~--Glk-~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~--~g~~~~~~d 173 (391)
+..+ +++||. ||+.+++.|+++ |+| +|+|.+-.=.+-.+.|+.+...+.. ..+.. .|-.-...|
T Consensus 274 F~~~~~~~~~~~~~~-----GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k-~~~~~~spg~~~~~~d 347 (747)
T PF05691_consen 274 FRAYKSGKSPEAFPS-----GLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYK-LVYPKLSPGLQGNMPD 347 (747)
T ss_pred hhhccCCCcccCCcc-----cHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccc-eeecccCCcccccCcc
Confidence 2222 235777 999999999998 898 6999764222222333332210000 00000 000000011
Q ss_pred ccccCCCCccCCCCceeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCCCC-----CCC-C-hHHHH----HHHHHHHhc
Q 041825 174 IAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCAFG-----DDL-D-EGEIA----VVSEVFKGQ 242 (391)
Q Consensus 174 i~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~-~~~~~----~~~~Al~~~ 242 (391)
+.... . ..++...+++. .+..||+...+.+++-|||+||+|.... ... . .+-.+ +|..++.+.
T Consensus 348 ~~~d~-~---~~~g~glv~p~--~~~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~~S~~r~ 421 (747)
T PF05691_consen 348 LAVDS-I---VKGGLGLVDPE--DAFRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQDALEASVARH 421 (747)
T ss_pred ccccc-c---ccCcccccCHH--HHHHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHh
Confidence 10000 0 01222334432 4788999999999999999999997532 111 1 12123 344444432
Q ss_pred c-CCcEEEEeCCCCCCChhHHHhhhccccEEEecCCCCCChhhH----------HHHHH-HHHHHHHhhhhcccCCCCCC
Q 041825 243 Q-NRPIIYSLSPGTSATPAMAQKINGLANMYRVTGDDWDSWPDV----------AAHFS-VARDFAAANMTGALGLKGKS 310 (391)
Q Consensus 243 ~-gr~i~ls~~~~~~~~p~~~~~~~~~an~~Ris~D~~~~W~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~ 310 (391)
. |+.++-|+|..+.. -+.. .+.....|+|+|.++.+..- ..++. .+..... +...
T Consensus 422 F~~~~vI~CMsh~~~~--l~~~--~~~~av~R~SDDF~P~~p~s~p~g~~w~h~~Hi~~nAyNsL~~---------g~~~ 488 (747)
T PF05691_consen 422 FSGNGVINCMSHNPDN--LYHS--TKQSAVVRNSDDFFPRDPASDPNGVFWLHTWHIAHNAYNSLLL---------GQFV 488 (747)
T ss_pred CCCCCeEEecCCCccc--hhcc--cccccceeccccccCCCCCCCccccchhhHHHHHHHHHHHHHH---------Hhhc
Confidence 3 46788888864321 1111 23467899999998765422 22222 2222211 1246
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcccccCCCCCCHhHHh--hccChhhHhhhcCCC
Q 041825 311 WPDLDMLPLGWLTDANSTQGPYRACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTYG--LITNPTLLEIDHHSS 386 (391)
Q Consensus 311 wnDpDml~~G~~~~~~~~~g~~~~~~lt~~E~rt~~tlwa~~~sPL~ig~Dl~~l~~~~l~--lL~N~eviavnQd~~ 386 (391)
|+|-||+..-. .-.+.|..+.||+|+|++|||.+.+-+-+.|. +|.+..||.....++
T Consensus 489 ~PDwDMF~S~h------------------~~A~~HAaaRaiSGGPVYiSD~pG~hd~~LLk~LvlpDG~ilR~~~pg~ 548 (747)
T PF05691_consen 489 WPDWDMFQSSH------------------PAAEFHAAARAISGGPVYISDKPGKHDFDLLKKLVLPDGSILRADHPGR 548 (747)
T ss_pred CCCcccccccC------------------ccHHHHHHHHhhcCCCEEEeeCCCCCCHHHHHHhhCCCCceeccccCCC
Confidence 89999996431 23678999999999999999999887765555 345666666655543
No 14
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=99.75 E-value=5.1e-17 Score=170.97 Aligned_cols=301 Identities=15% Similarity=0.141 Sum_probs=170.4
Q ss_pred eEeeccccccccCCHHHHHHHHHHHHH-hhccCCceEEEecccccccccCCccc--------CCCCccccCCCCCceeC-
Q 041825 38 RGWNSYDAFCWIISEQEFLESADIVAK-RLLPHGYEYVVVDYLWYRKKVKGAHI--------DSEGIDLIDEWGRMVPD- 107 (391)
Q Consensus 38 mGWnSW~~~~~~i~e~~v~~~ad~~~~-~l~~~Gy~~v~IDdgW~~~~~~g~~~--------~~~~~~~~d~~G~~~~d- 107 (391)
.|||||++||.+||++.|++-++.+++ |.. -.+|+||||||.-..++... ...|...--..-++..|
T Consensus 215 fGWCTWdAfy~~Vt~egI~~gl~~L~~~Gip---~~~vIIDDGWQsi~~d~~~~~~~~~~~~~~~g~q~~~rL~~f~en~ 291 (777)
T PLN02711 215 FGWCTWDAFYLTVHPQGVWEGVKGLVDGGCP---PGLVLIDDGWQSICHDEDPISDQEGMNRTVAGEQMPCRLLKFEENY 291 (777)
T ss_pred ceEEehhHhcccCCHHHHHHHHHHHHhCCCC---ccEEEEcCCcccccccCcccccccccccccccchhhhhhccccccc
Confidence 699999999999999999999997654 444 36999999999843221100 00000000001223444
Q ss_pred --------CCCCCCCCCCCCHHHHHHHHHHc--CCe-EEEEeecCcchhhccCCccccccCCCCCCccc--Cccchhhhc
Q 041825 108 --------PERWPSSKGGKGFTEIAKKVHDI--GLK-FGIHVMKGISTQAVNANTLIYDYDKGGPYMEA--GRQWRAQDI 174 (391)
Q Consensus 108 --------~~kFP~~~~~~G~k~lad~ih~~--Glk-~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~--g~~~~~~di 174 (391)
+..||. |||.+++.||++ |+| +|+|.+-.=.+-.+.++.+...+.. ..|... |-.-+.+|+
T Consensus 292 KF~~~~~~~~~~p~-----Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~-~~~p~~spg~~~~~~d~ 365 (777)
T PLN02711 292 KFRDYVSPKSLSNK-----GMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESK-VVAPKLSPGLKMTMEDL 365 (777)
T ss_pred cccccccccCCCCC-----cHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccce-eeccccCcccccccccc
Confidence 334565 999999999995 787 6999864333333344433211000 000000 000011111
Q ss_pred c-ccCCCCccCCCCceeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCCCC-----CCC-Ch-HHHHHHHHHHHh----c
Q 041825 175 A-IKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCAFG-----DDL-DE-GEIAVVSEVFKG----Q 242 (391)
Q Consensus 175 ~-~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~~-~~~~~~~~Al~~----~ 242 (391)
. ++- ..++...+|+ ..+..||+.....+++-|||+||+|...- ..+ .. +-.+++++||.+ .
T Consensus 366 ~~d~~-----~~~g~glv~P--e~~~~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S~~r~ 438 (777)
T PLN02711 366 AVDKI-----VNNGVGLVPP--ELAYQMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTASVRKH 438 (777)
T ss_pred ccccc-----ccCcccccCH--HHHHHHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHHHHHh
Confidence 1 000 0122334554 34788999999999999999999996431 111 11 223445555543 1
Q ss_pred -cCCcEEEEeCCCCCCChhHHHhhhccccEEEecCCCCCC----------hhhHHHHH-HHHHHHHHhhhhcccCCCCCC
Q 041825 243 -QNRPIIYSLSPGTSATPAMAQKINGLANMYRVTGDDWDS----------WPDVAAHF-SVARDFAAANMTGALGLKGKS 310 (391)
Q Consensus 243 -~gr~i~ls~~~~~~~~p~~~~~~~~~an~~Ris~D~~~~----------W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 310 (391)
.++-++-++|.... .+. .-.+....-|+|+|-++. |-.-..++ +.+... . .+..-
T Consensus 439 F~~ng~I~CMs~~~d---~~~-~~tk~~av~R~SDDF~p~dP~sh~~g~~W~~~~Hi~~~AyNSL-----l----lg~~v 505 (777)
T PLN02711 439 FNGNGVIASMEHCND---FMF-LGTEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSL-----W----MGNFI 505 (777)
T ss_pred CCCCCeEeecccCch---hhh-ccCcccceeeecccccCCCCccccccccccccceeeeehhhhh-----h----hcccc
Confidence 23557777775321 010 001345789999998753 31111111 122222 1 12356
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcccccCCCCCCHhHHh--hccChhhHhhhcCC
Q 041825 311 WPDLDMLPLGWLTDANSTQGPYRACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTYG--LITNPTLLEIDHHS 385 (391)
Q Consensus 311 wnDpDml~~G~~~~~~~~~g~~~~~~lt~~E~rt~~tlwa~~~sPL~ig~Dl~~l~~~~l~--lL~N~eviavnQd~ 385 (391)
|+|-||+..- ..-.+.|....|++|+|++|||.+-+-+-+.|. +|.+-.|+.....+
T Consensus 506 ~PDWDMF~S~------------------Hp~A~~HAaaRAisGGPIYVSD~pG~Hdf~LLk~LvlpdGsIlR~~~pg 564 (777)
T PLN02711 506 HPDWDMFQST------------------HPCAEFHAASRAISGGPIYVSDSVGKHNFPLLKRLVLPDGSILRCQYYA 564 (777)
T ss_pred cCCchhhhcc------------------CchHHHHHHHHhhcCCCEEEecCCCCccHHHHHhhhCCCCcEecccCCC
Confidence 8999999644 235589999999999999999999776655544 33445555555433
No 15
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=99.73 E-value=7.9e-17 Score=158.14 Aligned_cols=214 Identities=17% Similarity=0.246 Sum_probs=140.1
Q ss_pred CCCCCCce---EeeccccccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeC
Q 041825 31 EHAALPPR---GWNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPD 107 (391)
Q Consensus 31 ~~~~~pPm---GWnSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d 107 (391)
|.++.||. |+ |.+-+...|++++++.++.+++. ...++.|.||++|+... ..|+++.|
T Consensus 1 G~~~l~P~wa~G~--~~~~~~y~~~~~v~~~~~~~~~~--~iP~d~~~lD~~w~~~~---------------~~~~f~~d 61 (308)
T cd06593 1 GRPALPPAWSFGL--WLSRSFYYDEEEVNEFADGMRER--NLPCDVIHLDCFWMKEF---------------QWCDFEFD 61 (308)
T ss_pred CCCCCCchHHHHH--HHHcccCCCHHHHHHHHHHHHHc--CCCeeEEEEecccccCC---------------cceeeEEC
Confidence 34566774 32 22222347999999999865321 12278999999998531 24689999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCC
Q 041825 108 PERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHG 187 (391)
Q Consensus 108 ~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~ 187 (391)
++|||+ +++|+++||++|+|+++|+.|++.. +++++.+.. ...|..++...+.....++++.
T Consensus 62 ~~~FPd------~~~~i~~l~~~G~~~~~~~~P~i~~-----~~~~~~e~~-------~~g~~v~~~~g~~~~~~~w~g~ 123 (308)
T cd06593 62 PDRFPD------PEGMLSRLKEKGFKVCLWINPYIAQ-----KSPLFKEAA-------EKGYLVKKPDGSVWQWDLWQPG 123 (308)
T ss_pred cccCCC------HHHHHHHHHHCCCeEEEEecCCCCC-----CchhHHHHH-------HCCeEEECCCCCeeeecccCCC
Confidence 999997 9999999999999999999998742 344332211 0112222222222223344566
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCCCCCCC--------Ch----HHH-----HHHHHHHHhccC--CcEE
Q 041825 188 FMAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCAFGDDL--------DE----GEI-----AVVSEVFKGQQN--RPII 248 (391)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~--------~~----~~~-----~~~~~Al~~~~g--r~i~ 248 (391)
.+.+|+++|++++|+.+.++.+.++|||++|+|++-.-+. .. ..| +.+.+++++..+ ||++
T Consensus 124 ~~~~Dftnp~a~~w~~~~~~~~~~~Gid~~~~D~~e~~p~~~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~ 203 (308)
T cd06593 124 MGIIDFTNPDACKWYKDKLKPLLDMGVDCFKTDFGERIPTDVVYYDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVV 203 (308)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHhCCcEEecCCCCCCCccccccCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 6789999999999999999999999999999998742100 10 112 345566665334 5888
Q ss_pred EEeCCCCCCChhHHHhhhccccEEEecCCCCCChhhHHHHHHH
Q 041825 249 YSLSPGTSATPAMAQKINGLANMYRVTGDDWDSWPDVAAHFSV 291 (391)
Q Consensus 249 ls~~~~~~~~p~~~~~~~~~an~~Ris~D~~~~W~~~~~~~~~ 291 (391)
++=+.... ...++-.| ++|+..+|+.+...+..
T Consensus 204 ~~Rs~~~G--------sqry~~~w--~GD~~s~w~~L~~~i~~ 236 (308)
T cd06593 204 WARSAWAG--------SQKYPVHW--GGDCESTFEGMAESLRG 236 (308)
T ss_pred EEcCCccc--------cccCCCEE--CCCcccCHHHHHHHHHH
Confidence 87654211 02345566 88999999887765543
No 16
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=99.58 E-value=8e-14 Score=146.99 Aligned_cols=215 Identities=17% Similarity=0.108 Sum_probs=116.4
Q ss_pred CCHHHHHHHHHHc--CCe-EEEEeecCcchhhccCCccccccCCCCCCccc--CccchhhhccccCCCCccCCCCceeec
Q 041825 118 KGFTEIAKKVHDI--GLK-FGIHVMKGISTQAVNANTLIYDYDKGGPYMEA--GRQWRAQDIAIKEKPCAWMPHGFMAVN 192 (391)
Q Consensus 118 ~G~k~lad~ih~~--Glk-~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~--g~~~~~~di~~~~~~c~~~~~~~~~lD 192 (391)
.|||.+++.||++ |+| +++|.+-.=.+..+.++.+-+.+. ..+... |-.-+..|+..- .-..++...+|
T Consensus 390 ~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k--~~~p~~spg~~~~~~d~a~d----~i~~~G~glv~ 463 (865)
T PLN02982 390 SGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAK--VVPARLSPGLDGTMNDLAVD----KIVEGGIGLVH 463 (865)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcce--EEecccCccccccCcchhhh----heecCceeccC
Confidence 4999999999885 466 588876422222333333111000 000000 000011111100 00113344555
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCcEEeecCCCC-----CCC-C-hHH----HHHHHHHHHhcc-CCcEEEEeCCCCCCChh
Q 041825 193 TKLGAGKAFLRSLHKQYADWGVDFVKHDCAFG-----DDL-D-EGE----IAVVSEVFKGQQ-NRPIIYSLSPGTSATPA 260 (391)
Q Consensus 193 ~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~-~~~----~~~~~~Al~~~~-gr~i~ls~~~~~~~~p~ 260 (391)
+. .+..||+.....+++-|||+||+|...- ..+ . .+- |.++...+.+.. ++-++-++|..+.. .
T Consensus 464 P~--~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggRv~La~ay~~al~~Sv~r~F~~ng~I~CM~~~~~~--~ 539 (865)
T PLN02982 464 PS--QAGDFYDSMHSYLASVGITGVKVDVIHTLEYVCEEYGGRVELAKAYYDGLSESLAKNFNGTGIIASMQQCNDF--F 539 (865)
T ss_pred HH--HHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeecccCchh--h
Confidence 43 3688999999999999999999996431 111 1 111 233444444323 34577777753221 1
Q ss_pred HHHhhhccccEEEecCCCCCC------hhhH----HHHHH-HHHHHHHhhhhcccCCCCCCCCCCCCcccccccCCCCCC
Q 041825 261 MAQKINGLANMYRVTGDDWDS------WPDV----AAHFS-VARDFAAANMTGALGLKGKSWPDLDMLPLGWLTDANSTQ 329 (391)
Q Consensus 261 ~~~~~~~~an~~Ris~D~~~~------W~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~wnDpDml~~G~~~~~~~~~ 329 (391)
+-. .+..-+-|+|+|.++. |... ..++. .+... .. +...|+|-||+..-
T Consensus 540 ~~~--tk~sav~R~SDDF~p~dP~shp~g~~wlq~~Hi~~~AyNSL-----l~----G~~v~PDWDMFqS~--------- 599 (865)
T PLN02982 540 FLG--TKQISMGRVGDDFWFQDPNGDPMGVYWLQGVHMIHCAYNSM-----WM----GQIIQPDWDMFQSD--------- 599 (865)
T ss_pred hcc--CCcceeeeccccccCCCCCcCccccccccceeeeehhhhhH-----hh----ccccccCchhcccc---------
Confidence 100 1345677999998753 3211 11122 12222 11 23578999999643
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCcccccCCCCCCHhHHh
Q 041825 330 GPYRACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLDDTTYG 371 (391)
Q Consensus 330 g~~~~~~lt~~E~rt~~tlwa~~~sPL~ig~Dl~~l~~~~l~ 371 (391)
..-.+.|....||+|+|+++||.+-+-+-+.+.
T Consensus 600 ---------H~~A~fHAaaRAIsGGPIYvSD~pG~Hdf~lLk 632 (865)
T PLN02982 600 ---------HLCAEFHAGSRAICGGPVYVSDSVGGHDFDLLK 632 (865)
T ss_pred ---------CchHHHHHHHHhhcCCCEEEeeCCCCccHHHHH
Confidence 244589999999999999999998876655544
No 17
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=99.48 E-value=2.1e-12 Score=128.56 Aligned_cols=195 Identities=19% Similarity=0.217 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHHH-HhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHH
Q 041825 50 ISEQEFLESADIVA-KRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVH 128 (391)
Q Consensus 50 i~e~~v~~~ad~~~-~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih 128 (391)
-|+++|++.++.++ .++. ++.|.||..|+. .++.++.|++|||+ .+.|++.||
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~i~lD~~~~~-----------------~~~~f~~d~~~fPd------p~~m~~~l~ 74 (339)
T cd06604 21 YPEEEVREIADEFRERDIP---CDAIYLDIDYMD-----------------GYRVFTWDKERFPD------PKELIKELH 74 (339)
T ss_pred CCHHHHHHHHHHHHHhCCC---cceEEECchhhC-----------------CCCceeeccccCCC------HHHHHHHHH
Confidence 48999999998654 3433 689999999985 25779999999997 999999999
Q ss_pred HcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHHHHH
Q 041825 129 DIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQ 208 (391)
Q Consensus 129 ~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~ 208 (391)
++|+|+-+|+.|++..+ ++++.+.+... .| +..++....+..-.++++....+|++||++++|+.+..+.
T Consensus 75 ~~g~~~~~~~~P~v~~~---~~~~~~~e~~~-----~g--~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~ 144 (339)
T cd06604 75 EQGFKVVTIIDPGVKVD---PGYDVYEEGLE-----ND--YFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKK 144 (339)
T ss_pred HCCCEEEEEEeCceeCC---CCChHHHHHHH-----CC--eEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHH
Confidence 99999999999988532 12222211100 01 1111111111112234555567999999999999888888
Q ss_pred HHhhCCcEEeecCCCCCC-------------C--------ChH----HH-----HHHHHHHHhc--cCCcEEEEeCCCCC
Q 041825 209 YADWGVDFVKHDCAFGDD-------------L--------DEG----EI-----AVVSEVFKGQ--QNRPIIYSLSPGTS 256 (391)
Q Consensus 209 ~a~wGvdylK~D~~~~~~-------------~--------~~~----~~-----~~~~~Al~~~--~gr~i~ls~~~~~~ 256 (391)
+.+.|||++|+|++-+.. + ... .| ++..+++++. -.||++++=+....
T Consensus 145 ~~~~Gvdg~w~D~~Ep~~~~~~~~~~~p~~~~~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G 224 (339)
T cd06604 145 FVDLGVDGIWNDMNEPAVFNTPGKTTMPRDAVHRLDGGGGTHEEVHNVYGLLMARATYEGLKKARPNERPFILTRAGYAG 224 (339)
T ss_pred HhhCCCceEeecCCCccccCCcccccCCccceeeCCCCCCcHhHhcchhhHHHHHHHHHHHHHhCCCCCcEEEEeccccc
Confidence 889999999999853210 0 011 12 2344556552 23788887654211
Q ss_pred CChhHHHhhhccccEEEecCCCCCChhhHHHHHH
Q 041825 257 ATPAMAQKINGLANMYRVTGDDWDSWPDVAAHFS 290 (391)
Q Consensus 257 ~~p~~~~~~~~~an~~Ris~D~~~~W~~~~~~~~ 290 (391)
. ..++-. -++|+..+|+.+...+.
T Consensus 225 ~--------qry~~~--W~GD~~ssW~~L~~~i~ 248 (339)
T cd06604 225 I--------QRYAAV--WTGDNRSSWEHLRLSIP 248 (339)
T ss_pred c--------cccccc--cCCcccCCHHHHHHHHH
Confidence 1 123332 36799999998776544
No 18
>PRK10658 putative alpha-glucosidase; Provisional
Probab=99.47 E-value=3.7e-12 Score=136.65 Aligned_cols=215 Identities=20% Similarity=0.278 Sum_probs=140.1
Q ss_pred cCCCCCCce---E-eeccccccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCce
Q 041825 30 TEHAALPPR---G-WNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMV 105 (391)
Q Consensus 30 ~~~~~~pPm---G-WnSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~ 105 (391)
+|.++.||. | |.|. .|..+.+|++|++.++.+++. +...+.|.||+.|+... .+++++
T Consensus 257 TGrp~lpP~WalG~w~s~-~~~~~~~e~~v~~~~~~~r~~--~iP~d~i~lD~~w~~~~---------------~~~~f~ 318 (665)
T PRK10658 257 TGRPALPPAWSFGLWLTT-SFTTNYDEATVNSFIDGMAER--DLPLHVFHFDCFWMKEF---------------QWCDFE 318 (665)
T ss_pred hCCCCCCchhhhheeeec-ccccCCCHHHHHHHHHHHHHc--CCCceEEEEchhhhcCC---------------ceeeeE
Confidence 477778884 3 4443 244456899999999866542 23368999999998631 257899
Q ss_pred eCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCC
Q 041825 106 PDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMP 185 (391)
Q Consensus 106 ~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~ 185 (391)
.|+++||+ .+.|+++||++|+|+-+|+.|++.. +++++.+..... +..++.......-..++
T Consensus 319 wd~~~FPd------p~~mi~~L~~~G~k~~~~i~P~i~~-----~s~~f~e~~~~g-------y~vk~~~G~~~~~~~W~ 380 (665)
T PRK10658 319 WDPRTFPD------PEGMLKRLKAKGLKICVWINPYIAQ-----KSPLFKEGKEKG-------YLLKRPDGSVWQWDKWQ 380 (665)
T ss_pred EChhhCCC------HHHHHHHHHHCCCEEEEeccCCcCC-----CchHHHHHHHCC-------eEEECCCCCEeeeeecC
Confidence 99999997 9999999999999999999999742 444443211111 11111111111111134
Q ss_pred CCceeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCCCC--------CCCChH----HH-----HHHHHHHHhcc--CCc
Q 041825 186 HGFMAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCAFG--------DDLDEG----EI-----AVVSEVFKGQQ--NRP 246 (391)
Q Consensus 186 ~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~--------~~~~~~----~~-----~~~~~Al~~~~--gr~ 246 (391)
+....+|+|||++++|+.+.++.+.+.|||.+|.|+.-. ...++. .| ++..+++++.. .||
T Consensus 381 g~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~~p~d~~~~~G~~~~~~hN~Y~~l~~ka~~e~l~~~~~~~r~ 460 (665)
T PRK10658 381 PGMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGERIPTDVVWFDGSDPQKMHNYYTYLYNKTVFDVLKETRGEGEA 460 (665)
T ss_pred CCceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCceeeccceecCCCcHHHhcchhHHHHHHHHHHHHHHhcCCCce
Confidence 556789999999999999999889999999999997421 111111 12 23455565533 378
Q ss_pred EEEEeCCCCCCChhHHHhhhccccEEEecCCCCCChhhHHHHHH
Q 041825 247 IIYSLSPGTSATPAMAQKINGLANMYRVTGDDWDSWPDVAAHFS 290 (391)
Q Consensus 247 i~ls~~~~~~~~p~~~~~~~~~an~~Ris~D~~~~W~~~~~~~~ 290 (391)
++++=|..... ..++-.| ++|+..+|+++...+.
T Consensus 461 ~i~tRs~~aGs--------Qry~~~W--sGD~~stw~~l~~si~ 494 (665)
T PRK10658 461 VLFARSATVGG--------QQFPVHW--GGDCYSNYESMAESLR 494 (665)
T ss_pred EEEEecccCCC--------CCCCCEE--CCCCCCCHHHHHHHHH
Confidence 88876642110 1244333 6899999998876544
No 19
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=99.46 E-value=5.3e-12 Score=125.72 Aligned_cols=199 Identities=14% Similarity=0.082 Sum_probs=127.2
Q ss_pred CCHHHHHHHHHHHH-HhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCH--HHHHHH
Q 041825 50 ISEQEFLESADIVA-KRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGF--TEIAKK 126 (391)
Q Consensus 50 i~e~~v~~~ad~~~-~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~--k~lad~ 126 (391)
-++++|++.++.++ .++. .+.|.||.+|+. .++.++.|+++||+ . +.|+++
T Consensus 21 ~~~~~v~~~~~~~r~~~iP---~d~i~lD~~~~~-----------------~~~~f~~d~~~FPd------p~~~~mi~~ 74 (339)
T cd06602 21 KNVDEVKEVVENMRAAGIP---LDVQWNDIDYMD-----------------RRRDFTLDPVRFPG------LKMPEFVDE 74 (339)
T ss_pred CCHHHHHHHHHHHHHhCCC---cceEEECccccc-----------------CccceecccccCCC------ccHHHHHHH
Confidence 47899999998654 3433 689999999985 35889999999997 6 999999
Q ss_pred HHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHHH
Q 041825 127 VHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLH 206 (391)
Q Consensus 127 ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~ 206 (391)
||++|+|+-+|+.|++......++++.+.+... ..+..++....+....++++....+|+|+|++++|+.+.+
T Consensus 75 L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~-------~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 147 (339)
T cd06602 75 LHANGQHYVPILDPAISANEPTGSYPPYDRGLE-------MDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEI 147 (339)
T ss_pred HHHCCCEEEEEEeCccccCcCCCCCHHHHHHHH-------CCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHH
Confidence 999999999999999853211112222211000 0111111111111223445555679999999999998888
Q ss_pred HH-HHhhCCcEEeecCCCCCCC-Ch-HHH-----HHHHHHHHhcc-CCcEEEEeCCCCCCChhHHHhhhccccEEEecCC
Q 041825 207 KQ-YADWGVDFVKHDCAFGDDL-DE-GEI-----AVVSEVFKGQQ-NRPIIYSLSPGTSATPAMAQKINGLANMYRVTGD 277 (391)
Q Consensus 207 ~~-~a~wGvdylK~D~~~~~~~-~~-~~~-----~~~~~Al~~~~-gr~i~ls~~~~~~~~p~~~~~~~~~an~~Ris~D 277 (391)
+. +.+.|||++|.|+.-+..+ .. ..| ++..+++++.. .||++++=|..... ..++-. -++|
T Consensus 148 ~~~~~~~Gvdg~w~D~~Ep~~~~~~hN~y~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~--------qry~~~--w~GD 217 (339)
T cd06602 148 KDFHDQVPFDGLWIDMNEPSNFYDVHNLYGLSEAIATYKALQSIPGKRPFVISRSTFPGS--------GRYAGH--WLGD 217 (339)
T ss_pred HHHHhcCCCcEEEecCCCCchHhhhcchhhHHHHHHHHHHHHhcCCCCCEEEEecCcccc--------ccccee--ECCC
Confidence 76 4679999999998643211 11 112 23345555423 37888876542111 123423 4679
Q ss_pred CCCChhhHHHHHHH
Q 041825 278 DWDSWPDVAAHFSV 291 (391)
Q Consensus 278 ~~~~W~~~~~~~~~ 291 (391)
+..+|+.+..++..
T Consensus 218 ~~s~W~~L~~~i~~ 231 (339)
T cd06602 218 NASTWEDLRYSIIG 231 (339)
T ss_pred ccCCHHHHHHHHHH
Confidence 99999987765443
No 20
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=99.43 E-value=4e-12 Score=130.63 Aligned_cols=218 Identities=19% Similarity=0.242 Sum_probs=127.1
Q ss_pred cCCCCCCceEe--eccccccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeC
Q 041825 30 TEHAALPPRGW--NSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPD 107 (391)
Q Consensus 30 ~~~~~~pPmGW--nSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d 107 (391)
+|.++.||. | --|.+-...-|++++++.++.+++. ....+.++||+.|+.. ++.++.|
T Consensus 19 tG~~~~pP~-walG~~~~~~~~~~~~~v~~~i~~~~~~--~iP~d~~~iD~~~~~~-----------------~~~f~~d 78 (441)
T PF01055_consen 19 TGRPPLPPR-WALGFWQSRWGYYNQDEVREVIDRYRSN--GIPLDVIWIDDDYQDG-----------------YGDFTWD 78 (441)
T ss_dssp HSSS----G-GGGSEEEEESTBTSHHHHHHHHHHHHHT--T--EEEEEE-GGGSBT-----------------TBTT-B-
T ss_pred HCCCCCCch-hhhceEeecCcCCCHHHHHHHHHHHHHc--CCCccceecccccccc-----------------ccccccc
Confidence 477888886 4 1222222235789999999866442 3447999999999863 5789999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCC
Q 041825 108 PERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHG 187 (391)
Q Consensus 108 ~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~ 187 (391)
+++||+ ++.+++.||++|+|+++|+.|++..+.. ..+.+.+... .++..++-........++++.
T Consensus 79 ~~~FPd------~~~~~~~l~~~G~~~~~~~~P~v~~~~~--~~~~~~~~~~-------~~~~v~~~~g~~~~~~~w~g~ 143 (441)
T PF01055_consen 79 PERFPD------PKQMIDELHDQGIKVVLWVHPFVSNDSP--DYENYDEAKE-------KGYLVKNPDGSPYIGRVWPGK 143 (441)
T ss_dssp TTTTTT------HHHHHHHHHHTT-EEEEEEESEEETTTT--B-HHHHHHHH-------TT-BEBCTTSSB-EEEETTEE
T ss_pred cccccc------hHHHHHhHhhCCcEEEEEeecccCCCCC--cchhhhhHhh-------cCceeecccCCcccccccCCc
Confidence 999996 9999999999999999999998864321 0011111000 011111111111112234455
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHhh-CCcEEeecCCCCCC--------C--------Ch----HHH-----HHHHHHHHh
Q 041825 188 FMAVNTKLGAGKAFLRSLHKQYADW-GVDFVKHDCAFGDD--------L--------DE----GEI-----AVVSEVFKG 241 (391)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~w-GvdylK~D~~~~~~--------~--------~~----~~~-----~~~~~Al~~ 241 (391)
...+|++||++++|+.+.++.+.+. |||++|+|+.-+.. . .. ..| ++..+++++
T Consensus 144 ~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~ 223 (441)
T PF01055_consen 144 GGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFDSNNTLPEDAVHHDGYSGYEMHNLYGLLYAKATYEALRE 223 (441)
T ss_dssp EEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSSTTTBSBCTTEECTTECEHHHHGGGHHHHHHHHHHHHHHH
T ss_pred ccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcccccccccCcccceecCCCCchheeccccccchhhhhhhhhh
Confidence 7889999999999998888877666 99999999853321 0 00 122 223445443
Q ss_pred --ccCCcEEEEeCCCCCCChhHHHhhhccccEEEecCCCCCChhhHHHHHHHH
Q 041825 242 --QQNRPIIYSLSPGTSATPAMAQKINGLANMYRVTGDDWDSWPDVAAHFSVA 292 (391)
Q Consensus 242 --~~gr~i~ls~~~~~~~~p~~~~~~~~~an~~Ris~D~~~~W~~~~~~~~~~ 292 (391)
-..||++++-+.+.. ...++..| ++|+..+|+.+...+...
T Consensus 224 ~~~~~r~~~~sRs~~~G--------~qr~~~~w--~GD~~s~w~~L~~~i~~~ 266 (441)
T PF01055_consen 224 IDPNKRPFIFSRSGWAG--------SQRYGGHW--SGDNSSSWDGLRSSIPAM 266 (441)
T ss_dssp HSTTSC-EEEESSEETT--------GGGTCEEE--ECSSBSSHHHHHHHHHHH
T ss_pred ccCCCCcceeecccCCC--------CCccceee--cccccccHHHHHHHHHHH
Confidence 145788887664211 12355554 779999999887765543
No 21
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=99.42 E-value=1.1e-11 Score=122.27 Aligned_cols=212 Identities=20% Similarity=0.240 Sum_probs=134.2
Q ss_pred CCCCCCce---E--eeccccccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCce
Q 041825 31 EHAALPPR---G--WNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMV 105 (391)
Q Consensus 31 ~~~~~pPm---G--WnSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~ 105 (391)
|.++.||. | .|.|. .-|+++|++.++.+++. ....+.|.||..|+. .++.++
T Consensus 1 G~~~lpP~walG~~~sr~~----y~~~~~v~~~~~~~~~~--~iP~d~i~lD~~~~~-----------------~~~~f~ 57 (317)
T cd06600 1 GKPALPPMWALGYHISRYS----YYPQDKVVEVVDIMQKE--GFPYDVVFLDIHYMD-----------------SYRLFT 57 (317)
T ss_pred CCCCCCchHHHHHHhcCCC----CCCHHHHHHHHHHHHHc--CCCcceEEEChhhhC-----------------CCCcee
Confidence 45667885 2 23332 23899999999865432 233799999999974 357899
Q ss_pred eCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCC
Q 041825 106 PDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMP 185 (391)
Q Consensus 106 ~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~ 185 (391)
.|+++||+ .+.|+++||++|+|+-+|+.|++... ++.+.+.+... ..+..++....+....+++
T Consensus 58 ~d~~~FPd------p~~~i~~l~~~g~k~~~~~~P~i~~~---~~~~~~~~~~~-------~~~~v~~~~g~~~~~~~w~ 121 (317)
T cd06600 58 WDPYRFPE------PKKLIDELHKRNVKLVTIVDPGIRVD---QNYSPFLSGMD-------KGKFCEIESGELFVGKMWP 121 (317)
T ss_pred echhcCCC------HHHHHHHHHHCCCEEEEEeeccccCC---CCChHHHHHHH-------CCEEEECCCCCeEEEeecC
Confidence 99999997 99999999999999999999998521 11121111000 0111111111111123445
Q ss_pred CCceeecCCcHHHHHHHHHHHHHHH-hhCCcEEeecCCCCCCC-Ch-HHH-----HHHHHHHHhc--cCCcEEEEeCCCC
Q 041825 186 HGFMAVNTKLGAGKAFLRSLHKQYA-DWGVDFVKHDCAFGDDL-DE-GEI-----AVVSEVFKGQ--QNRPIIYSLSPGT 255 (391)
Q Consensus 186 ~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~~-~~-~~~-----~~~~~Al~~~--~gr~i~ls~~~~~ 255 (391)
+....+|+|||++++|+.+.++.+. +.|||++|.|..-+..+ +. ..| .+..+++++. ..||++++=|...
T Consensus 122 G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~ 201 (317)
T cd06600 122 GTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPSDFEKVHNLYGLYEAMATAEGFRTSHPRNRIFILTRSGFA 201 (317)
T ss_pred CCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCccHHHhcchhhHHHHHHHHHHHHHhcCCCCceEEEecccc
Confidence 6556899999999999988887764 89999999998643211 00 112 2234455442 3478888876422
Q ss_pred CCChhHHHhhhccccEEEecCCCCCChhhHHHHHHH
Q 041825 256 SATPAMAQKINGLANMYRVTGDDWDSWPDVAAHFSV 291 (391)
Q Consensus 256 ~~~p~~~~~~~~~an~~Ris~D~~~~W~~~~~~~~~ 291 (391)
.. ..++- =-++|+..+|+.+...+..
T Consensus 202 G~--------qry~~--~W~GD~~s~W~~L~~~i~~ 227 (317)
T cd06600 202 GS--------QKYAA--IWTGDNTASWDDLKLSIPL 227 (317)
T ss_pred cc--------CCccc--eECCcccccHHHHHHHHHH
Confidence 11 12342 2467999999987765543
No 22
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=99.41 E-value=5.7e-12 Score=124.50 Aligned_cols=196 Identities=18% Similarity=0.238 Sum_probs=125.3
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHH
Q 041825 50 ISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHD 129 (391)
Q Consensus 50 i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~ 129 (391)
-|+++|++.++.+++. ....+.|.||..|+... .++.++.|++|||+ ++.++++||+
T Consensus 21 ~~~~ev~~~~~~~~~~--~iP~d~i~lD~~~~~~~---------------~~~~f~~d~~~FPd------p~~mi~~L~~ 77 (319)
T cd06591 21 KTQEELLDVAKEYRKR--GIPLDVIVQDWFYWPKQ---------------GWGEWKFDPERFPD------PKAMVRELHE 77 (319)
T ss_pred CCHHHHHHHHHHHHHh--CCCccEEEEechhhcCC---------------CceeEEEChhhCCC------HHHHHHHHHH
Confidence 3899999999865432 34479999998887531 13599999999997 9999999999
Q ss_pred cCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHHH-HH
Q 041825 130 IGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLH-KQ 208 (391)
Q Consensus 130 ~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~-~~ 208 (391)
+|+|+-+++.|++.. +++.+.+.... .+..++....... .|.++....+|++||++++|+.+.+ +.
T Consensus 78 ~G~kv~~~i~P~v~~-----~~~~y~e~~~~-------g~~v~~~~g~~~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~~ 144 (319)
T cd06591 78 MNAELMISIWPTFGP-----ETENYKEMDEK-------GYLIKTDRGPRVT-MQFGGNTRFYDATNPEAREYYWKQLKKN 144 (319)
T ss_pred CCCEEEEEecCCcCC-----CChhHHHHHHC-------CEEEEcCCCCeee-eeCCCCccccCCCCHHHHHHHHHHHHHH
Confidence 999999999999742 33333221111 1111111111111 2445556789999999999886555 45
Q ss_pred HHhhCCcEEeecCCCCCC-----------C---C-h---HHH-----HHHHHHHHhcc--CCcEEEEeCCCCCCChhHHH
Q 041825 209 YADWGVDFVKHDCAFGDD-----------L---D-E---GEI-----AVVSEVFKGQQ--NRPIIYSLSPGTSATPAMAQ 263 (391)
Q Consensus 209 ~a~wGvdylK~D~~~~~~-----------~---~-~---~~~-----~~~~~Al~~~~--gr~i~ls~~~~~~~~p~~~~ 263 (391)
+.+.|||++|.|+.-+.. . . . ..| ++..+++++.. .||++++=+....
T Consensus 145 ~~~~Gvdg~w~D~~Ep~~~~~~~~~~~~~~~~~~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~~G------- 217 (319)
T cd06591 145 YYDKGVDAWWLDAAEPEYSVYDFGLDNYRYHLGPGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILTRSAWAG------- 217 (319)
T ss_pred hhcCCCcEEEecCCCCCccCCcccccCcccCCCCchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEEeccccc-------
Confidence 789999999999863210 0 0 0 112 22344555512 4888887653211
Q ss_pred hhhcccc-EEEecCCCCCChhhHHHHHHH
Q 041825 264 KINGLAN-MYRVTGDDWDSWPDVAAHFSV 291 (391)
Q Consensus 264 ~~~~~an-~~Ris~D~~~~W~~~~~~~~~ 291 (391)
...|+. .| ++|+..+|+.+...+..
T Consensus 218 -sqry~~~~W--~GD~~s~w~~L~~~i~~ 243 (319)
T cd06591 218 -SQRYGALVW--SGDIDSSWETLRRQIAA 243 (319)
T ss_pred -cccccCcee--CCCccccHHHHHHHHHH
Confidence 023443 23 47999999988766543
No 23
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.40 E-value=7.9e-12 Score=123.40 Aligned_cols=202 Identities=13% Similarity=0.107 Sum_probs=128.9
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHH
Q 041825 50 ISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHD 129 (391)
Q Consensus 50 i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~ 129 (391)
-|+++|++.++.+++. ....+.|.||.+|+....+. ..+|+++.|++|||+ .+.|+++||+
T Consensus 21 ~~~~~v~~~~~~~~~~--~iP~d~i~lD~~w~~~~~~~-----------~~~~~f~wd~~~FPd------p~~mi~~L~~ 81 (317)
T cd06598 21 RNWQEVDDTIKTLREK--DFPLDAAILDLYWFGKDIDK-----------GHMGNLDWDRKAFPD------PAGMIADLAK 81 (317)
T ss_pred CCHHHHHHHHHHHHHh--CCCceEEEEechhhcCcccC-----------CceeeeEeccccCCC------HHHHHHHHHH
Confidence 4789999999865432 23368999999998743110 146899999999997 9999999999
Q ss_pred cCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhc-cccCCCCccCCCCceeecCCcHHHHHHHHHHHHH
Q 041825 130 IGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDI-AIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQ 208 (391)
Q Consensus 130 ~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di-~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~ 208 (391)
+|+|+-+|+.|++.. +++.+.+.... | +...+. ...+..-.++++....+|+|||++++|+.+.++.
T Consensus 82 ~G~k~~~~v~P~v~~-----~~~~y~e~~~~-----g--~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~ 149 (317)
T cd06598 82 KGVKTIVITEPFVLK-----NSKNWGEAVKA-----G--ALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKK 149 (317)
T ss_pred cCCcEEEEEcCcccC-----CchhHHHHHhC-----C--CEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHH
Confidence 999999999998753 33333221101 1 100010 0011112234555678999999999999999888
Q ss_pred HHhhCCcEEeecCCCCCCC---------Ch----HHH-----HHHHHHHHh--ccCCcEEEEeCCCCCCChhHHHhhhcc
Q 041825 209 YADWGVDFVKHDCAFGDDL---------DE----GEI-----AVVSEVFKG--QQNRPIIYSLSPGTSATPAMAQKINGL 268 (391)
Q Consensus 209 ~a~wGvdylK~D~~~~~~~---------~~----~~~-----~~~~~Al~~--~~gr~i~ls~~~~~~~~p~~~~~~~~~ 268 (391)
+.+.|||.+|.|++-+... .. ..| ++..+++++ ...||++++=|..... ..+
T Consensus 150 ~~~~Gvdg~w~D~~Ep~~~~~~~~~~~g~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~Gs--------qry 221 (317)
T cd06598 150 LIDQGVTGWWGDLGEPEVHPPDMCHHKGKAAEVHNIYGHLWAKSIYEGYQQNYPNERPFILMRAGFAGS--------QRY 221 (317)
T ss_pred hhhCCccEEEecCCCccccCCccccCCCcHhHHhhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCcc--------ccC
Confidence 8999999999998743100 01 112 223344443 1347888876542110 123
Q ss_pred ccEEEecCCCCCChhhHHHHHHH
Q 041825 269 ANMYRVTGDDWDSWPDVAAHFSV 291 (391)
Q Consensus 269 an~~Ris~D~~~~W~~~~~~~~~ 291 (391)
+.+ -=++|+..+|+.+..++..
T Consensus 222 ~~~-~WsGD~~s~W~~L~~~i~~ 243 (317)
T cd06598 222 GVI-PWSGDVGRTWDGLKSQPNA 243 (317)
T ss_pred cCC-ccCCCCcCCHHHHHHHHHH
Confidence 321 1257999999988776554
No 24
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.39 E-value=1.8e-11 Score=120.90 Aligned_cols=200 Identities=16% Similarity=0.141 Sum_probs=127.0
Q ss_pred cCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHH
Q 041825 49 IISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVH 128 (391)
Q Consensus 49 ~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih 128 (391)
..++++|++.++.+++. ...++.|.||.+|+... + .....++.|+++||+ .+.|+++||
T Consensus 25 ~~~q~~v~~~~~~~r~~--~iP~d~i~ld~~~~~~~--~-----------~~~~~f~~d~~~FPd------p~~mi~~L~ 83 (317)
T cd06599 25 PDAQEALLEFIDKCREH--DIPCDSFHLSSGYTSIE--G-----------GKRYVFNWNKDRFPD------PAAFVAKFH 83 (317)
T ss_pred ccHHHHHHHHHHHHHHc--CCCeeEEEEeccccccC--C-----------CceeeeecCcccCCC------HHHHHHHHH
Confidence 35699999999865432 23378999999998641 0 123568899999997 999999999
Q ss_pred HcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhcccc-CCCCccCCCCceeecCCcHHHHHHHHHHH-
Q 041825 129 DIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIK-EKPCAWMPHGFMAVNTKLGAGKAFLRSLH- 206 (391)
Q Consensus 129 ~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~-~~~c~~~~~~~~~lD~t~p~~~~~~~~~~- 206 (391)
++|+|+-+|+.|++.. .++.+.+.... | +..++.... +..-.++++....+|+|||++++|+.+.+
T Consensus 84 ~~g~k~~~~i~P~i~~-----~~~~y~e~~~~-----g--~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 151 (317)
T cd06599 84 ERGIRLAPNIKPGLLQ-----DHPRYKELKEA-----G--AFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVK 151 (317)
T ss_pred HCCCEEEEEeCCcccC-----CCHHHHHHHHC-----C--cEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHH
Confidence 9999999999999742 23333221100 1 111111110 11122445555689999999999998877
Q ss_pred HHHHhhCCcEEeecCCCCC-----C--------CChH----HH-----HHHHHHHHhc--cCCcEEEEeCCCCCCChhHH
Q 041825 207 KQYADWGVDFVKHDCAFGD-----D--------LDEG----EI-----AVVSEVFKGQ--QNRPIIYSLSPGTSATPAMA 262 (391)
Q Consensus 207 ~~~a~wGvdylK~D~~~~~-----~--------~~~~----~~-----~~~~~Al~~~--~gr~i~ls~~~~~~~~p~~~ 262 (391)
+.+.+.|||++|.|.+-.. . .+.. .| ++..+++++. -.||++++=|....
T Consensus 152 ~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~g~~~~~~~~~n~y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~G------ 225 (317)
T cd06599 152 EALLDLGIDSTWNDNNEYEIWDDDAVCDGFGKPGTIGELRPVQPNLMARASHEAQAEHYPNRRPYIVSRSGFAG------ 225 (317)
T ss_pred HHHhcCCCcEEEecCCCCccCCCcceecCCCCccchhhcccchHHHHHHHHHHHHHHhCCCCCcEEEEcCCccc------
Confidence 5678999999999986321 0 0001 11 2334555441 23688876553211
Q ss_pred HhhhccccEEEecCCCCCChhhHHHHHHH
Q 041825 263 QKINGLANMYRVTGDDWDSWPDVAAHFSV 291 (391)
Q Consensus 263 ~~~~~~an~~Ris~D~~~~W~~~~~~~~~ 291 (391)
...++-. -++|+..+|+.+...+..
T Consensus 226 --~qry~~~--WsGD~~s~W~~L~~~i~~ 250 (317)
T cd06599 226 --IQRYAQT--WSGDNRTSWKTLRYNIAM 250 (317)
T ss_pred --ccCCcCe--eCCCcccCHHHHHHHHHH
Confidence 1234333 378999999988766543
No 25
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.37 E-value=5.1e-11 Score=118.77 Aligned_cols=231 Identities=13% Similarity=0.139 Sum_probs=133.6
Q ss_pred CCCCCCceEee--ccccccccCCHHHHHHHHHHHHH-hhccCCceEEEecccccccccCCcccCCCCcccc--C-----C
Q 041825 31 EHAALPPRGWN--SYDAFCWIISEQEFLESADIVAK-RLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLI--D-----E 100 (391)
Q Consensus 31 ~~~~~pPmGWn--SW~~~~~~i~e~~v~~~ad~~~~-~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~--d-----~ 100 (391)
|.++.||. |. -|.+-+..-|+++|++.++.+++ ++ .++.|.||+ |+....--.-++ ...+ | .
T Consensus 1 G~p~lpP~-walG~~~sr~~Y~~~~ev~~v~~~~~~~~i---P~d~i~lD~-W~~~~~~~~w~d---~~y~~~~~~~~~~ 72 (340)
T cd06597 1 GKPELLPK-WAFGLWMSANEWDTQAEVMRQMDAHEEHGI---PVTVVVIEQ-WSDEATFYVFND---AQYTPKDGGAPLS 72 (340)
T ss_pred CCCCCCch-HHhhhhhhccCCCCHHHHHHHHHHHHHcCC---CeeEEEEec-ccCcceeeeecc---chhcccccCCcce
Confidence 45667775 43 34333344689999999986543 33 368999995 886320000000 0000 1 1
Q ss_pred CCCceeCC-CCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcc-cCccchhhhccccC
Q 041825 101 WGRMVPDP-ERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYME-AGRQWRAQDIAIKE 178 (391)
Q Consensus 101 ~G~~~~d~-~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~-~g~~~~~~di~~~~ 178 (391)
+++...++ +|||+ .+.|+++||++|+|+-+|+.|++........... ..|.+ .-..+..++....+
T Consensus 73 ~~~~~f~~~~~FPd------p~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~------~~~~~~~~~g~~vk~~~G~~ 140 (340)
T cd06597 73 YDDFSFPVEGRWPN------PKGMIDELHEQGVKVLLWQIPIIKLRPHPHGQAD------NDEDYAVAQNYLVQRGVGKP 140 (340)
T ss_pred ecccccCccccCCC------HHHHHHHHHHCCCEEEEEecCccccccccccccc------hhHHHHHHCCEEEEcCCCCc
Confidence 34555553 78997 9999999999999999999999853210000000 00100 00011122211111
Q ss_pred CCC-ccCCCCceeecCCcHHHHHHHHHHHHHHH-hhCCcEEeecCCCC---CC------CCh--------HHH-HHHHHH
Q 041825 179 KPC-AWMPHGFMAVNTKLGAGKAFLRSLHKQYA-DWGVDFVKHDCAFG---DD------LDE--------GEI-AVVSEV 238 (391)
Q Consensus 179 ~~c-~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~---~~------~~~--------~~~-~~~~~A 238 (391)
..- .++++....+|+|||++++|+.+.++.+. +.|||.+|+|+.-. .. ... ..+ +++.++
T Consensus 141 ~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~~~Gidg~w~D~~E~~~~~~~~~~~g~~~~~~hN~y~~~~~~~~~e~ 220 (340)
T cd06597 141 YRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVDELGIDGFKTDGGEHVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDF 220 (340)
T ss_pred cccccccCCCceeecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCccCCCCceecCCCcHHHhhcccHHHHHHHHHHH
Confidence 111 34556667899999999999988888765 79999999997421 11 001 111 345556
Q ss_pred HHhccCCcEEEEeCCCCCCChhHHHhhhccccEEEecCCCCCChhhHHHHHHH
Q 041825 239 FKGQQNRPIIYSLSPGTSATPAMAQKINGLANMYRVTGDDWDSWPDVAAHFSV 291 (391)
Q Consensus 239 l~~~~gr~i~ls~~~~~~~~p~~~~~~~~~an~~Ris~D~~~~W~~~~~~~~~ 291 (391)
+++.-.||++++=|..... ..++-.| ++|+..+|+.+...+..
T Consensus 221 ~~~~~~r~filtRs~~~Gs--------qry~~~W--sGD~~s~W~~L~~~i~~ 263 (340)
T cd06597 221 LRRAKKDGVTFSRAGYTGA--------QAHGIFW--AGDENSTFGAFRWSVFA 263 (340)
T ss_pred HHhccCCcEEEEecccCcc--------CCCccee--cCCCCCCHHHHHHHHHH
Confidence 6662237888876642111 2344345 88999999988766543
No 26
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=99.37 E-value=6.1e-11 Score=117.11 Aligned_cols=212 Identities=14% Similarity=0.172 Sum_probs=128.3
Q ss_pred CCCCCCc---eE-eeccccccccCCHHHHHHHHHHHHH-hhccCCceEEEecccccccccCCcccCCCCccccCCCC---
Q 041825 31 EHAALPP---RG-WNSYDAFCWIISEQEFLESADIVAK-RLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWG--- 102 (391)
Q Consensus 31 ~~~~~pP---mG-WnSW~~~~~~i~e~~v~~~ad~~~~-~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G--- 102 (391)
|.++.|| +| |-|=+ +. ++++|++.++.+++ ++. .+.|.|| .|+.... +..|
T Consensus 1 G~~p~~P~wa~G~~~~~~--~~--s~~~v~~~~~~~~~~~iP---~d~i~ld-dw~~~~~-------------~~~g~~~ 59 (317)
T cd06594 1 GRQPELPDWAYGGAILGL--QG--GTDKVLEALEKARAAGVK---VAGLWLQ-DWTGRRE-------------TSFGDRL 59 (317)
T ss_pred CCCCCCchhhhCcEEeee--eC--CHHHHHHHHHHHHHcCCC---eeEEEEc-cccCccc-------------cccccee
Confidence 3456666 34 55432 22 99999999996543 333 6899999 5864210 1123
Q ss_pred --CceeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcc-cCccchhhhccccCC
Q 041825 103 --RMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYME-AGRQWRAQDIAIKEK 179 (391)
Q Consensus 103 --~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~-~g~~~~~~di~~~~~ 179 (391)
.++.|+++||+ .+.|+++||++|+|+-+|+.|++.. +++-. |.+ ....+..++...++.
T Consensus 60 ~~~f~~d~~~FPd------p~~mi~~Lh~~G~~~~~~i~P~v~~-----~~~~~-------y~~~~~~g~~vk~~~g~~~ 121 (317)
T cd06594 60 WWNWEWDPERYPG------LDELIEELKARGIRVLTYINPYLAD-----DGPLY-------YEEAKDAGYLVKDADGSPY 121 (317)
T ss_pred eeeeEEChhhCCC------HHHHHHHHHHCCCEEEEEecCceec-----CCchh-------HHHHHHCCeEEECCCCCee
Confidence 47999999997 9999999999999999999999853 11110 111 000111111111111
Q ss_pred CCccCCCCceeecCCcHHHHHHHHHHHHHH-HhhCCcEEeecCCCCCC--------CCh----HHHH-----HHHHHHHh
Q 041825 180 PCAWMPHGFMAVNTKLGAGKAFLRSLHKQY-ADWGVDFVKHDCAFGDD--------LDE----GEIA-----VVSEVFKG 241 (391)
Q Consensus 180 ~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~~~~~--------~~~----~~~~-----~~~~Al~~ 241 (391)
.-.+.++....+|+++|++++|+.+.++.+ .+.|||.+|.|+.-.-. .+. ..|. +..+++++
T Consensus 122 ~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~y~~~~~~~~~~~~~~ 201 (317)
T cd06594 122 LVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGEYLPFDAVLHSGEDAATMHNRYPELWAKLNREAVEE 201 (317)
T ss_pred eeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCCCCCCcceecCCCCHHHHhhHHHHHHHHHHHHHHHH
Confidence 123444555789999999999998777765 88999999999742210 111 1232 23445544
Q ss_pred c--cCCcEEEEeCCCCCCChhHHHhhhccccEEEecCCCCCChhh---HHHHHH
Q 041825 242 Q--QNRPIIYSLSPGTSATPAMAQKINGLANMYRVTGDDWDSWPD---VAAHFS 290 (391)
Q Consensus 242 ~--~gr~i~ls~~~~~~~~p~~~~~~~~~an~~Ris~D~~~~W~~---~~~~~~ 290 (391)
. .+||++++=|.... ...++.+-+ ++|+..+|+. +...+.
T Consensus 202 ~~~~~r~fvltRs~~~G--------sqry~~~~W-sGD~~s~W~~~~~L~~~i~ 246 (317)
T cd06594 202 AGKTGDILFFMRSGFTG--------SQKYSTLFW-AGDQMVSWDAHDGLKSVVP 246 (317)
T ss_pred hccCCCeEEEEcccccc--------ccccccccc-CCCCCCCCcCcccHHHHHH
Confidence 2 25788887664211 123554322 5799999983 554443
No 27
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.36 E-value=4.6e-11 Score=116.69 Aligned_cols=208 Identities=21% Similarity=0.251 Sum_probs=130.9
Q ss_pred cCCCCCCce---Ee--eccccccccCCHHHHHHHHHHHH-HhhccCCceEEEecccccccccCCcccCCCCccccCCCCC
Q 041825 30 TEHAALPPR---GW--NSYDAFCWIISEQEFLESADIVA-KRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGR 103 (391)
Q Consensus 30 ~~~~~~pPm---GW--nSW~~~~~~i~e~~v~~~ad~~~-~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~ 103 (391)
+|.++.||. |+ |.|. ..|+++|++.++.++ .++. .+.|.||..|+..... ....+.++.
T Consensus 1 TG~~~~~P~walG~~qsr~~----y~s~~ev~~v~~~~r~~~iP---~D~i~lD~dw~~~~~~--------~~~~~~~~~ 65 (292)
T cd06595 1 AGKIPLLPRYAFGNWWSRYW----PYSDEEYLALMDRFKKHNIP---LDVLVIDMDWHVTDIP--------SKYGSGWTG 65 (292)
T ss_pred CCCCCCCchHHHHhHhhCCc----CCCHHHHHHHHHHHHHhCCC---ccEEEEeccccccccc--------ccccCCcce
Confidence 366778884 32 3332 348999999998654 3433 7999999999864210 000245789
Q ss_pred ceeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCcc
Q 041825 104 MVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAW 183 (391)
Q Consensus 104 ~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~ 183 (391)
++.|+++||+ .+.|+++||++|+|+-+++.|++.. ....+.+ .+ ..++.. +..
T Consensus 66 ft~d~~~FPd------p~~mi~~Lh~~G~k~v~~v~P~~~~---~~~~~~y--------~~-----~~~~~~-----~~~ 118 (292)
T cd06595 66 YSWNRKLFPD------PEKLLQDLHDRGLKVTLNLHPADGI---RAHEDQY--------PE-----MAKALG-----VDP 118 (292)
T ss_pred eEEChhcCCC------HHHHHHHHHHCCCEEEEEeCCCccc---CCCcHHH--------HH-----HHHhcC-----CCc
Confidence 9999999997 9999999999999999999997531 1111111 10 011111 111
Q ss_pred CCCCceeecCCcHHHHHHH-HHHHHHHHhhCCcEEeecCCCCC-----CCChHHH-HH-HHHHHHhccCCcEEEEeCCCC
Q 041825 184 MPHGFMAVNTKLGAGKAFL-RSLHKQYADWGVDFVKHDCAFGD-----DLDEGEI-AV-VSEVFKGQQNRPIIYSLSPGT 255 (391)
Q Consensus 184 ~~~~~~~lD~t~p~~~~~~-~~~~~~~a~wGvdylK~D~~~~~-----~~~~~~~-~~-~~~Al~~~~gr~i~ls~~~~~ 255 (391)
..+....+|+++|++.+|+ +.+.+.+.+.|||.+|.|..-+. ...+... .. ......+...||++++=|...
T Consensus 119 ~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E~~~~~~~~~~~~~~~~~~~y~~~~~~~~r~f~lsRs~~~ 198 (292)
T cd06595 119 ATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQGNRTRTPGLDPLWWLNHVHYLDSARNGRRPLIFSRWAGL 198 (292)
T ss_pred ccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCCcccccCCcchHHHHHHHHHHHhhccCCCcEEEEeeccc
Confidence 1123457899999999865 66667788999999999975321 1121111 01 011111115689999766421
Q ss_pred CCChhHHHhhhccccEEEecCCCCCChhhHHHHH
Q 041825 256 SATPAMAQKINGLANMYRVTGDDWDSWPDVAAHF 289 (391)
Q Consensus 256 ~~~p~~~~~~~~~an~~Ris~D~~~~W~~~~~~~ 289 (391)
. ..+|+-.| ++|+..+|+.+...+
T Consensus 199 G--------~qry~~~W--sGD~~s~W~~l~~~i 222 (292)
T cd06595 199 G--------SHRYPIGF--SGDTIISWASLAFQP 222 (292)
T ss_pred C--------CCcCCCcc--CCCcccCHHHHHHHH
Confidence 1 13466677 899999999887543
No 28
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=99.30 E-value=1.1e-10 Score=116.22 Aligned_cols=197 Identities=12% Similarity=0.090 Sum_probs=125.9
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHH
Q 041825 50 ISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHD 129 (391)
Q Consensus 50 i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~ 129 (391)
-|+++|++.++.+++. ....+.|.||..|+. .++.++.|++|||+ .+.|+++||+
T Consensus 21 ~~~~ev~~~~~~~~~~--~iP~d~i~lD~~~~~-----------------~~~~f~~d~~~FPd------p~~mi~~L~~ 75 (339)
T cd06603 21 KDQEDVKEVDAGFDEH--DIPYDVIWLDIEHTD-----------------GKRYFTWDKKKFPD------PEKMQEKLAS 75 (339)
T ss_pred CCHHHHHHHHHHHHHc--CCCceEEEEChHHhC-----------------CCCceEeCcccCCC------HHHHHHHHHH
Confidence 4899999999865432 233789999999974 24779999999997 9999999999
Q ss_pred cCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHHHHHH
Q 041825 130 IGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQY 209 (391)
Q Consensus 130 ~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~ 209 (391)
+|+|+-+|+.|++.. .++++++.+.... .+..++.......-.++++....+|++||++++|+.+.++.+
T Consensus 76 ~G~k~~~~~~P~v~~---~~~~~~y~e~~~~-------g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06603 76 KGRKLVTIVDPHIKR---DDGYYVYKEAKDK-------GYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYD 145 (339)
T ss_pred CCCEEEEEecCceec---CCCCHHHHHHHHC-------CeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHH
Confidence 999999999999853 1223333221111 111111111111112345555679999999999998888765
Q ss_pred H---hhCCcEEeecCCCCCC-------C----------ChH----HH-----HHHHHHHHhcc---CCcEEEEeCCCCCC
Q 041825 210 A---DWGVDFVKHDCAFGDD-------L----------DEG----EI-----AVVSEVFKGQQ---NRPIIYSLSPGTSA 257 (391)
Q Consensus 210 a---~wGvdylK~D~~~~~~-------~----------~~~----~~-----~~~~~Al~~~~---gr~i~ls~~~~~~~ 257 (391)
. +-|+++++.|..-+.. + ... .| ++..+++++.. .||++++=|.....
T Consensus 146 ~~~~~~g~~g~w~D~~Ep~~f~~~~~~~p~d~~~~~~~~~~~~hN~y~~~~~~a~~e~~~~~~~~~~r~~~~sRs~~~G~ 225 (339)
T cd06603 146 KYKGSTENLYIWNDMNEPSVFNGPELTMPKDAIHYGGIEHREVHNIYGLYMHMATFDGLLKRSEGNKRPFVLTRSFFAGS 225 (339)
T ss_pred hhcccCCCceEEeccCCccccCCCCCcCCCcceecCCCcHHHHhhHhHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 4 4799999999653210 0 111 12 23445565423 47888776642111
Q ss_pred ChhHHHhhhccccEEEecCCCCCChhhHHHHHHH
Q 041825 258 TPAMAQKINGLANMYRVTGDDWDSWPDVAAHFSV 291 (391)
Q Consensus 258 ~p~~~~~~~~~an~~Ris~D~~~~W~~~~~~~~~ 291 (391)
..++-. -++|+..+|+.+..++..
T Consensus 226 --------qry~~~--W~GD~~s~W~~L~~~i~~ 249 (339)
T cd06603 226 --------QRYAAI--WTGDNTATWEHLKISIPM 249 (339)
T ss_pred --------cceeee--eCCCccCCHHHHHHHHHH
Confidence 234433 467999999988766543
No 29
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=99.29 E-value=2.7e-10 Score=113.13 Aligned_cols=171 Identities=16% Similarity=0.186 Sum_probs=120.3
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHH
Q 041825 50 ISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHD 129 (391)
Q Consensus 50 i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~ 129 (391)
-|+++|++.++.+++. +..++.|.||..|+. .++.++.|+++||+ .+.|+++||+
T Consensus 21 ~~~~ev~~v~~~~r~~--~IP~D~i~lDidy~~-----------------~~~~Ft~d~~~FPd------p~~mv~~L~~ 75 (332)
T cd06601 21 SNRSDLEEVVEGYRDN--NIPLDGLHVDVDFQD-----------------NYRTFTTNGGGFPN------PKEMFDNLHN 75 (332)
T ss_pred CCHHHHHHHHHHHHHc--CCCCceEEEcCchhc-----------------CCCceeecCCCCCC------HHHHHHHHHH
Confidence 3889999999866432 334799999999974 36889999999997 9999999999
Q ss_pred cCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHHHHHH
Q 041825 130 IGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQY 209 (391)
Q Consensus 130 ~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~ 209 (391)
+|+|..+++.|++.. |..| ++....+|++||++++|....++.+
T Consensus 76 ~G~klv~~i~P~i~~---------------------g~~~---------------~~~~~~pDftnp~ar~wW~~~~~~l 119 (332)
T cd06601 76 KGLKCSTNITPVISY---------------------GGGL---------------GSPGLYPDLGRPDVREWWGNQYKYL 119 (332)
T ss_pred CCCeEEEEecCceec---------------------CccC---------------CCCceeeCCCCHHHHHHHHHHHHHH
Confidence 999999999998741 1111 1112468999999999998888888
Q ss_pred HhhCCcEEeecCCCCC---------CC-----------------Ch-HH----H-----HHHHHHHHhc----cCCcEEE
Q 041825 210 ADWGVDFVKHDCAFGD---------DL-----------------DE-GE----I-----AVVSEVFKGQ----QNRPIIY 249 (391)
Q Consensus 210 a~wGvdylK~D~~~~~---------~~-----------------~~-~~----~-----~~~~~Al~~~----~gr~i~l 249 (391)
.+-|||+++.|..-+. .+ .+ .+ | ++..+++++. -.||+++
T Consensus 120 ~~~Gv~~~W~DmnEp~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~hN~Y~~~~~~a~~e~~~~~~~~~~~Rpfil 199 (332)
T cd06601 120 FDIGLEFVWQDMTTPAIMPSYGDMKGFPPRLLVTDDSYENNVKRKPAIELWNLYSYNLHKATWHGLNNLNARKNKRNFII 199 (332)
T ss_pred HhCCCceeecCCCCcccccCCCccCCCCCcccccCCccccccCCchHHHHhhhhHHHHHHHHHHHHHHhhcCCCCCcEEE
Confidence 8899999999963210 00 00 01 2 2334445431 2488888
Q ss_pred EeCCCCCCChhHHHhhhccccEEEecCCCCCChhhHHHHHHH
Q 041825 250 SLSPGTSATPAMAQKINGLANMYRVTGDDWDSWPDVAAHFSV 291 (391)
Q Consensus 250 s~~~~~~~~p~~~~~~~~~an~~Ris~D~~~~W~~~~~~~~~ 291 (391)
+=|.... ...|+-.| ++|+..+|+.+...+..
T Consensus 200 tRS~~aG--------sqrY~~~W--sGDn~stW~~L~~si~~ 231 (332)
T cd06601 200 GRGSYAG--------MQRFAGLW--TGDNSSSWDFLQINIAQ 231 (332)
T ss_pred EecCcCc--------cCCcCcee--CCCcccCHHHHHHHHHH
Confidence 7664211 12455554 78999999988765443
No 30
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1.6e-10 Score=125.57 Aligned_cols=212 Identities=23% Similarity=0.341 Sum_probs=140.6
Q ss_pred cCCCCCCc---eEeeccccccccCCHHHHHHHHHHHHHhhccCCceEEEeccc-ccccccCCcccCCCCccccCCCCCce
Q 041825 30 TEHAALPP---RGWNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYL-WYRKKVKGAHIDSEGIDLIDEWGRMV 105 (391)
Q Consensus 30 ~~~~~~pP---mGWnSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdg-W~~~~~~g~~~~~~~~~~~d~~G~~~ 105 (391)
+|.++.|| +| +.|......-+|+++++.++.+.+. +..++.|.+|.. |.. .++.++
T Consensus 255 TGkp~l~P~Wa~G-~~~~~~~~~~~e~~v~~~i~~~~~~--~IP~d~~~lD~~~~~~-----------------~~~~F~ 314 (772)
T COG1501 255 TGKPPLPPKWALG-WLWTSRYTYYDEDEVLEFIDEMRER--DIPLDVFVLDIDFWMD-----------------NWGDFT 314 (772)
T ss_pred hCCCCCCCceecC-CCceeccccccHHHHHHHHhhcccc--cCcceEEEEeehhhhc-----------------cccceE
Confidence 57778888 57 2333334456799999999876543 344799999985 753 468899
Q ss_pred eCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccC-CCCccC
Q 041825 106 PDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKE-KPCAWM 184 (391)
Q Consensus 106 ~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~-~~c~~~ 184 (391)
.|+.+||+ .|.|++++|++|+|+=+|+.|.+.. .++++.+.... .|..++..... ..+.|
T Consensus 315 wd~~~FP~------pk~mi~~l~~~Gikl~~~i~P~i~~-----d~~~~~e~~~~-------Gy~~k~~~g~~~~~~~w- 375 (772)
T COG1501 315 WDPDRFPD------PKQMIAELHEKGIKLIVIINPYIKQ-----DSPLFKEAIEK-------GYFVKDPDGEIYQADFW- 375 (772)
T ss_pred ECcccCCC------HHHHHHHHHhcCceEEEEecccccc-----CCchHHHHHHC-------CeEEECCCCCEeeeccc-
Confidence 99999997 9999999999999999999998743 23443221111 12222221111 12223
Q ss_pred CCCceeecCCcHHHHHHHHH-HHHHHHhhCCcEEeecCCCCCC---------CChH---------HHHHHHHHHHhc--c
Q 041825 185 PHGFMAVNTKLGAGKAFLRS-LHKQYADWGVDFVKHDCAFGDD---------LDEG---------EIAVVSEVFKGQ--Q 243 (391)
Q Consensus 185 ~~~~~~lD~t~p~~~~~~~~-~~~~~a~wGvdylK~D~~~~~~---------~~~~---------~~~~~~~Al~~~--~ 243 (391)
++....+|++||++++|+.+ ..+.+.+.|||.+|.|++-... .+.+ ..++..+|+++. .
T Consensus 376 ~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~ 455 (772)
T COG1501 376 PGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGN 455 (772)
T ss_pred CCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCccccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCC
Confidence 34456799999999999985 4466899999999999863311 1111 124456677762 3
Q ss_pred CCcEEEEeCCCCCCChhHHHhhhccccEEEecCCCCCChhhHHHHHH
Q 041825 244 NRPIIYSLSPGTSATPAMAQKINGLANMYRVTGDDWDSWPDVAAHFS 290 (391)
Q Consensus 244 gr~i~ls~~~~~~~~p~~~~~~~~~an~~Ris~D~~~~W~~~~~~~~ 290 (391)
.||++|+=|..... ..++-.| ++|+..+|+++...+-
T Consensus 456 ~r~~~lsRsg~aG~--------Q~~~~~W--sGD~~s~wd~l~~si~ 492 (772)
T COG1501 456 ERPFILSRSGYAGS--------QRYAAHW--SGDNRSSWDSLRESIP 492 (772)
T ss_pred CceEEEEecccccc--------eecccee--CCccccchHHHHhhHH
Confidence 58999987642211 1244555 7899999998876543
No 31
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=99.23 E-value=1.1e-09 Score=105.60 Aligned_cols=168 Identities=20% Similarity=0.302 Sum_probs=115.3
Q ss_pred CCCCCCceEee--ccccccccCCHHHHHHHHHHHH-HhhccCCceEEEecccccccccCCcccCCCCccccCCCCCc--e
Q 041825 31 EHAALPPRGWN--SYDAFCWIISEQEFLESADIVA-KRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRM--V 105 (391)
Q Consensus 31 ~~~~~pPmGWn--SW~~~~~~i~e~~v~~~ad~~~-~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~--~ 105 (391)
|.++.||. |. .|.+.....|+++|++.++.++ .++ ..+.|.||++|+.. +|.+ +
T Consensus 1 G~p~~~P~-wa~G~~~~~~~~~~~~~v~~~~~~~~~~~i---P~d~~~lD~~~~~~-----------------~~~f~~~ 59 (265)
T cd06589 1 GKPALPPK-WAFGYWLSRYGYGDQDKVLEVIDGMRENDI---PLDGFVLDDDYTDG-----------------YGDFTFD 59 (265)
T ss_pred CCCCCCcH-HHHHHHHhcCCCCCHHHHHHHHHHHHHcCC---CccEEEECcccccC-----------------Cceeeee
Confidence 45667886 42 4545555679999999998654 343 37999999999864 3555 9
Q ss_pred eCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCC
Q 041825 106 PDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMP 185 (391)
Q Consensus 106 ~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~ 185 (391)
.|+++||+ .+.++++||++|+|+.+|+.|++
T Consensus 60 ~d~~~Fpd------p~~~i~~l~~~g~~~~~~~~P~v------------------------------------------- 90 (265)
T cd06589 60 WDAGKFPN------PKSMIDELHDNGVKLVLWIDPYI------------------------------------------- 90 (265)
T ss_pred cChhhCCC------HHHHHHHHHHCCCEEEEEeChhH-------------------------------------------
Confidence 99999997 99999999999999999998743
Q ss_pred CCceeecCCcHHHHHHHHHHHHHH-HhhCCcEEeecCCCCCCC-------------Ch----HHH-----HHHHHHHHhc
Q 041825 186 HGFMAVNTKLGAGKAFLRSLHKQY-ADWGVDFVKHDCAFGDDL-------------DE----GEI-----AVVSEVFKGQ 242 (391)
Q Consensus 186 ~~~~~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~~~~~~-------------~~----~~~-----~~~~~Al~~~ 242 (391)
++|+.+.++.+ .+.|||++|+|..-+... .. ..| +++.+++++.
T Consensus 91 -------------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~ 157 (265)
T cd06589 91 -------------REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNIFTGGVVGRVKHEEMHNAYPLLYAEATYEALRKN 157 (265)
T ss_pred -------------HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCccccCCcCCCccHHHHcchhHHHHHHHHHHHHHHh
Confidence 34555555554 899999999998643111 11 112 2345566552
Q ss_pred --cCCcEEEEeCCCCCCChhHHHhhhccccEEEecCCCCCChhhHHHHHHH
Q 041825 243 --QNRPIIYSLSPGTSATPAMAQKINGLANMYRVTGDDWDSWPDVAAHFSV 291 (391)
Q Consensus 243 --~gr~i~ls~~~~~~~~p~~~~~~~~~an~~Ris~D~~~~W~~~~~~~~~ 291 (391)
..||++++-|..... ..++-. -++|+..+|+.+..++..
T Consensus 158 ~~~~r~~~~sRs~~~Gs--------qry~~~--W~GD~~stW~~l~~~i~~ 198 (265)
T cd06589 158 SKNKRPFILSRSGYAGS--------QRYAGM--WSGDNTSTWGYLRSQIPA 198 (265)
T ss_pred cCCCCeEEEEcCCcccc--------cCcCce--eCCcccCCHHHHHHHHHH
Confidence 347888876642111 234323 467899999998765543
No 32
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=99.18 E-value=2.2e-09 Score=118.19 Aligned_cols=212 Identities=18% Similarity=0.241 Sum_probs=133.9
Q ss_pred cCCCCCCce---Ee--eccccccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCc
Q 041825 30 TEHAALPPR---GW--NSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRM 104 (391)
Q Consensus 30 ~~~~~~pPm---GW--nSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~ 104 (391)
+|.++.||. |+ |-|. | -|+++|++.++.+++. ....+.|.+|..|+. .++.+
T Consensus 177 TGrp~mpP~WALGy~qSR~~-Y---~sq~eV~eva~~fre~--~IP~DvIwlDidYm~-----------------g~~~F 233 (978)
T PLN02763 177 IGTVFMPPKWALGYQQCRWS-Y---ESAKRVAEIARTFREK--KIPCDVVWMDIDYMD-----------------GFRCF 233 (978)
T ss_pred hCCCCCCchHHhheeeccCC-C---CCHHHHHHHHHHHHHc--CCCceEEEEehhhhc-----------------CCCce
Confidence 588888885 32 2232 2 3789999999866542 334799999998864 35679
Q ss_pred eeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccC
Q 041825 105 VPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWM 184 (391)
Q Consensus 105 ~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~ 184 (391)
+.|+++||+ .+.|+++||++|+|.-.++.|++... ++-+++.+.... ++..++....+..-.++
T Consensus 234 TwD~~rFPd------P~~mv~~Lh~~G~kvv~iidPgI~~d---~gY~~y~eg~~~-------~~fvk~~~G~~y~G~vW 297 (978)
T PLN02763 234 TFDKERFPD------PKGLADDLHSIGFKAIWMLDPGIKAE---EGYFVYDSGCEN-------DVWIQTADGKPFVGEVW 297 (978)
T ss_pred eECcccCCC------HHHHHHHHHHCCCEEEEEEcCCCccC---CCCHHHHhHhhc-------CeeEECCCCCeeEeeec
Confidence 999999997 99999999999999977789987521 111222111000 00011111111111234
Q ss_pred CCCceeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCCCCCCC-----------------------ChHH----H-----
Q 041825 185 PHGFMAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCAFGDDL-----------------------DEGE----I----- 232 (391)
Q Consensus 185 ~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~-----------------------~~~~----~----- 232 (391)
++....+|++||++++|+....+.+.+.|||.++.|.+-+..+ ...+ |
T Consensus 298 pG~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~DmnEPa~f~~~~~t~P~~~~h~g~~~~gG~~~h~~~HNlYgll~a 377 (978)
T PLN02763 298 PGPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMNEPAVFKTVTKTMPETNIHRGDEELGGVQNHSHYHNVYGMLMA 377 (978)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCCCCccccCCcCCCCccccccCCcccCCccCHHHHhhhhHHHHH
Confidence 5656678999999999999999999899999999997532100 0111 2
Q ss_pred HHHHHHHHhc--cCCcEEEEeCCCCCCChhHHHhhhccccEEEecCCCCCChhhHHHHHH
Q 041825 233 AVVSEVFKGQ--QNRPIIYSLSPGTSATPAMAQKINGLANMYRVTGDDWDSWPDVAAHFS 290 (391)
Q Consensus 233 ~~~~~Al~~~--~gr~i~ls~~~~~~~~p~~~~~~~~~an~~Ris~D~~~~W~~~~~~~~ 290 (391)
++..+++++. -.||++++=|..... ..++-.| ++|...+|+.+...+.
T Consensus 378 katyEgl~~~~~~kRPFilTRSgfaGs--------QRYaa~W--tGDn~SsWe~L~~sI~ 427 (978)
T PLN02763 378 RSTYEGMLLANKNKRPFVLTRAGFIGS--------QRYAATW--TGDNLSNWEHLHMSIP 427 (978)
T ss_pred HHHHHHHHHhCCCCCcEEEEccccCcC--------CCCceEE--CCCccCCHHHHHHHHH
Confidence 1223444331 248999876642111 2344343 7899999998876544
No 33
>PRK10426 alpha-glucosidase; Provisional
Probab=99.12 E-value=1.8e-09 Score=115.73 Aligned_cols=218 Identities=11% Similarity=0.092 Sum_probs=130.1
Q ss_pred cCCCCCCceEeec---cccccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCcee
Q 041825 30 TEHAALPPRGWNS---YDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVP 106 (391)
Q Consensus 30 ~~~~~~pPmGWnS---W~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~ 106 (391)
+|.++.||. |.- |..+. -++++|++.++.+++. ....+.|.|| .|+...... -| ....++++.
T Consensus 198 tGr~p~~P~-Wal~G~~~g~~--~~~~~v~~v~~~~r~~--~IP~d~i~ld-dw~~~~~~~-----~g---~~~~~~~~~ 263 (635)
T PRK10426 198 FGRQPELPD-WAYDGVTLGIQ--GGTEVVQKKLDTMRNA--GVKVNGIWAQ-DWSGIRMTS-----FG---KRLMWNWKW 263 (635)
T ss_pred hCCCCCCCh-hhccCcccccc--CCHHHHHHHHHHHHHc--CCCeeEEEEe-ccccccccc-----cc---ccccccceE
Confidence 577888886 443 32222 2577888888865432 2226888898 497532100 00 112346899
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCC
Q 041825 107 DPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPH 186 (391)
Q Consensus 107 d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~ 186 (391)
|+++||+ .+.++++||++|+|+=+|+.|++.. +++++.+..... +..++.........+.++
T Consensus 264 d~~~FPd------p~~mi~~L~~~G~k~v~~i~P~v~~-----~~~~y~e~~~~g-------y~vk~~~g~~~~~~~~~~ 325 (635)
T PRK10426 264 DSERYPQ------LDSRIKQLNEEGIQFLGYINPYLAS-----DGDLCEEAAEKG-------YLAKDADGGDYLVEFGEF 325 (635)
T ss_pred ChhhCCC------HHHHHHHHHHCCCEEEEEEcCccCC-----CCHHHHHHHHCC-------cEEECCCCCEEEeEecCC
Confidence 9999997 9999999999999999999998752 344432211111 111111111111122233
Q ss_pred CceeecCCcHHHHHHHHHHHH-HHHhhCCcEEeecCCCC---C-----CCChH----HH-----HHHHHHHHhc--cCCc
Q 041825 187 GFMAVNTKLGAGKAFLRSLHK-QYADWGVDFVKHDCAFG---D-----DLDEG----EI-----AVVSEVFKGQ--QNRP 246 (391)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~~-~~a~wGvdylK~D~~~~---~-----~~~~~----~~-----~~~~~Al~~~--~gr~ 246 (391)
....+|++||++++|+.+.++ .+.+.|||.+|.|+.-. + ..+.. .| ++..+++++. .+||
T Consensus 326 ~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~ 405 (635)
T PRK10426 326 YAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYLPTDAYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEI 405 (635)
T ss_pred CceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCCCCcceeeCCCCHHHhccHHHHHHHHHHHHHHHHhcCCCCc
Confidence 346899999999999987764 57899999999997421 0 11111 12 2234555552 3588
Q ss_pred EEEEeCCCCCCChhHHHhhhcccc-EEEecCCCCCChh---hHHHHH
Q 041825 247 IIYSLSPGTSATPAMAQKINGLAN-MYRVTGDDWDSWP---DVAAHF 289 (391)
Q Consensus 247 i~ls~~~~~~~~p~~~~~~~~~an-~~Ris~D~~~~W~---~~~~~~ 289 (391)
++++=|.... ...++. .| ++|...+|+ .+...+
T Consensus 406 f~ltRsg~aG--------sQry~~~~W--sGD~~ssW~~~d~L~~~I 442 (635)
T PRK10426 406 LFFMRAGYTG--------SQKYSTLFW--AGDQNVDWSLDDGLASVV 442 (635)
T ss_pred EEEEccccCC--------cCCcccccc--CCCCCCcCcChhHHHHHH
Confidence 8887654211 123444 35 689999996 455443
No 34
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=98.43 E-value=1.6e-06 Score=93.17 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=107.9
Q ss_pred cCCCCCCceEeecccccc--ccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeC
Q 041825 30 TEHAALPPRGWNSYDAFC--WIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPD 107 (391)
Q Consensus 30 ~~~~~~pPmGWnSW~~~~--~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d 107 (391)
.|....||. |+-+..+. ...|.+++++.++.+.+ ...+++.+.+|.-|+. .+++++.|
T Consensus 287 iG~P~m~pY-WslGf~~~RwgY~nls~~~dvv~~~~~--agiPld~~~~DiDyMd-----------------~ykDFTvd 346 (805)
T KOG1065|consen 287 IGRPAMPPY-WSLGFQLCRWGYKNLSVVRDVVENYRA--AGIPLDVIVIDIDYMD-----------------GYKDFTVD 346 (805)
T ss_pred hCCccCCch-hhccceecccccccHHHHHHHHHHHHH--cCCCcceeeeehhhhh-----------------cccceeec
Confidence 577777777 99997665 46788888888875422 1244789999998964 57999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCC------CC
Q 041825 108 PERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEK------PC 181 (391)
Q Consensus 108 ~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~------~c 181 (391)
+.+||. |+.+++.||+.|+|.=+.+.|++.+- +. ++ .|.+ | ..+++..+.. .-
T Consensus 347 ~~~fp~------~~~fv~~Lh~~G~kyvliidP~is~~-----~~-y~-----~y~~-g---~~~~v~I~~~~g~~~~lg 405 (805)
T KOG1065|consen 347 KVWFPD------LKDFVDDLHARGFKYVLIIDPFISTN-----SS-YG-----PYDR-G---VAKDVLIKNREGSPKMLG 405 (805)
T ss_pred cccCcc------hHHHHHHHHhCCCeEEEEeCCccccC-----cc-ch-----hhhh-h---hhhceeeecccCchhhhc
Confidence 999995 99999999999999999999998641 11 10 0111 0 1112111110 01
Q ss_pred ccCCCCceeecCCcHHHHHHHHHHHHHHH-hhCCcEEeecC
Q 041825 182 AWMPHGFMAVNTKLGAGKAFLRSLHKQYA-DWGVDFVKHDC 221 (391)
Q Consensus 182 ~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~ 221 (391)
.-+|+..+..|+++|.++.|...-++.|. +-+||.+++|.
T Consensus 406 ~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDm 446 (805)
T KOG1065|consen 406 EVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDM 446 (805)
T ss_pred ccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEEC
Confidence 11345678899999999999877777874 69999999996
No 35
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=98.35 E-value=4e-06 Score=80.86 Aligned_cols=129 Identities=21% Similarity=0.291 Sum_probs=75.7
Q ss_pred ccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCC-ceeCCCCCCCCCCCCCHHHHHHH
Q 041825 48 WIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGR-MVPDPERWPSSKGGKGFTEIAKK 126 (391)
Q Consensus 48 ~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~-~~~d~~kFP~~~~~~G~k~lad~ 126 (391)
..+|.+..++.+|+- .++|++||.||+||..... +...+ ..+.+. . -|+.|++|
T Consensus 27 ~g~~t~~~k~yIDfA----a~~G~eYvlvD~GW~~~~~-------------~~~~d~~~~~~~--~------dl~elv~Y 81 (273)
T PF10566_consen 27 HGATTETQKRYIDFA----AEMGIEYVLVDAGWYGWEK-------------DDDFDFTKPIPD--F------DLPELVDY 81 (273)
T ss_dssp BSSSHHHHHHHHHHH----HHTT-SEEEEBTTCCGS---------------TTT--TT-B-TT----------HHHHHHH
T ss_pred CCCCHHHHHHHHHHH----HHcCCCEEEeccccccccc-------------cccccccccCCc--c------CHHHHHHH
Confidence 368999999999973 4589999999999986321 01111 122211 2 59999999
Q ss_pred HHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHHH
Q 041825 127 VHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLH 206 (391)
Q Consensus 127 ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~ 206 (391)
.++||.++=||..--.. +...+ ++ ++ .+..+
T Consensus 82 a~~KgVgi~lw~~~~~~-------------------------~~~~~-----------------~~------~~-~~~~f 112 (273)
T PF10566_consen 82 AKEKGVGIWLWYHSETG-------------------------GNVAN-----------------LE------KQ-LDEAF 112 (273)
T ss_dssp HHHTT-EEEEEEECCHT-------------------------TBHHH-----------------HH------CC-HHHHH
T ss_pred HHHcCCCEEEEEeCCcc-------------------------hhhHh-----------------HH------HH-HHHHH
Confidence 99999999999753110 00000 01 11 35667
Q ss_pred HHHHhhCCcEEeecCCCCCCCChHHHHHHHHHHHhccCCcEEEEeC
Q 041825 207 KQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQNRPIIYSLS 252 (391)
Q Consensus 207 ~~~a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~~~gr~i~ls~~ 252 (391)
+++++|||.-||+||+..+ +.+....++++++++....+++..-
T Consensus 113 ~~~~~~Gv~GvKidF~~~d--~Q~~v~~y~~i~~~AA~~~LmvnfH 156 (273)
T PF10566_consen 113 KLYAKWGVKGVKIDFMDRD--DQEMVNWYEDILEDAAEYKLMVNFH 156 (273)
T ss_dssp HHHHHCTEEEEEEE--SST--SHHHHHHHHHHHHHHHHTT-EEEET
T ss_pred HHHHHcCCCEEeeCcCCCC--CHHHHHHHHHHHHHHHHcCcEEEec
Confidence 9999999999999998642 2233334444444434456777764
No 36
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=96.83 E-value=0.026 Score=55.79 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCcc--CCCCceeecCCcH
Q 041825 119 GFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAW--MPHGFMAVNTKLG 196 (391)
Q Consensus 119 G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~--~~~~~~~lD~t~p 196 (391)
-|+.+++..|++||++=-|+..+.... ..+.+... ++.|...+- +...+.. ..++.+.||+.+|
T Consensus 71 pL~~~I~eaHkrGlevHAW~~~~~~~~---~~~~~~~~---------~p~~~~~~~--~~~~~~~~~~~~~~~~lnP~~P 136 (311)
T PF02638_consen 71 PLEFMIEEAHKRGLEVHAWFRVGFNAP---DVSHILKK---------HPEWFAVNH--PGWVRTYEDANGGYYWLNPGHP 136 (311)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeecCCC---chhhhhhc---------CchhheecC--CCceeecccCCCCceEECCCCH
Confidence 489999999999999988884443221 11122211 233321110 1111111 1245678999999
Q ss_pred HHHHHHHHHHHHH-HhhCCcEEeecCC
Q 041825 197 AGKAFLRSLHKQY-ADWGVDFVKHDCA 222 (391)
Q Consensus 197 ~~~~~~~~~~~~~-a~wGvdylK~D~~ 222 (391)
++|+|+.+.++-+ ..+.||.|-+|.+
T Consensus 137 eVr~~i~~~v~Eiv~~YdvDGIhlDdy 163 (311)
T PF02638_consen 137 EVRDYIIDIVKEIVKNYDVDGIHLDDY 163 (311)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEeccc
Confidence 9999998888765 6799999999953
No 37
>PLN00196 alpha-amylase; Provisional
Probab=96.46 E-value=0.049 Score=56.23 Aligned_cols=35 Identities=17% Similarity=-0.020 Sum_probs=30.0
Q ss_pred ceeecCCcHHHHHHHHHHHHHHH-hhCCcEEeecCC
Q 041825 188 FMAVNTKLGAGKAFLRSLHKQYA-DWGVDFVKHDCA 222 (391)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~ 222 (391)
.--||.+||++++++.+.++-+. +.|||-+.+|..
T Consensus 170 lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~a 205 (428)
T PLN00196 170 APDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFA 205 (428)
T ss_pred CCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehh
Confidence 34589999999999988877774 799999999986
No 38
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.79 E-value=0.097 Score=51.84 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCC-CCceeecCCcHH
Q 041825 119 GFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMP-HGFMAVNTKLGA 197 (391)
Q Consensus 119 G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~-~~~~~lD~t~p~ 197 (391)
.++.|++.+|++|+.+=-++.-|-.. .+... +++|..+.. ..-.|.. .+...+||.+++
T Consensus 62 D~~~l~~~l~e~gIY~IARIv~FkD~-------~la~~---------~pe~av~~~----~G~~w~d~~~~~WvnP~~~e 121 (316)
T PF13200_consen 62 DLKALVKKLKEHGIYPIARIVVFKDP-------VLAEA---------HPEWAVKTK----DGSVWRDNEGEAWVNPYSKE 121 (316)
T ss_pred CHHHHHHHHHHCCCEEEEEEEEecCh-------HHhhh---------ChhhEEECC----CCCcccCCCCCccCCCCCHH
Confidence 59999999999999887777655321 11111 222322110 0111322 245679999999
Q ss_pred HHHHHHHHHHHHHhhCCcEEeecCC
Q 041825 198 GKAFLRSLHKQYADWGVDFVKHDCA 222 (391)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~D~~ 222 (391)
+.+|.-.+++..++.|||=|-+|++
T Consensus 122 vw~Y~i~IA~Eaa~~GFdEIqfDYI 146 (316)
T PF13200_consen 122 VWDYNIDIAKEAAKLGFDEIQFDYI 146 (316)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeeee
Confidence 9999999999999999999999986
No 39
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.042 Score=58.84 Aligned_cols=137 Identities=16% Similarity=0.208 Sum_probs=85.3
Q ss_pred cCCCCCCce---Ee--eccccccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCc
Q 041825 30 TEHAALPPR---GW--NSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRM 104 (391)
Q Consensus 30 ~~~~~~pPm---GW--nSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~ 104 (391)
+|..+.||+ |+ |-|| ..+|++|++.-+-+.+. +..|++|-||--... ..-.+
T Consensus 348 TG~~~LPplFsiGYHQcRWN----Y~DE~DV~~Vd~~FDeh--diP~DviWLDIEhtd-----------------gKrYF 404 (915)
T KOG1066|consen 348 TGTTPLPPLFSIGYHQCRWN----YNDEEDVLTVDQGFDEH--DIPYDVIWLDIEHTD-----------------GKRYF 404 (915)
T ss_pred cCCCCCCchhhcchhhcccc----ccchhhhhhhhcCcccc--CCccceEEEeeeecC-----------------CceeE
Confidence 588888995 43 4454 24778877765544433 345888988854432 23458
Q ss_pred eeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccC--CCCc
Q 041825 105 VPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKE--KPCA 182 (391)
Q Consensus 105 ~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~--~~c~ 182 (391)
+.|+.+||+ -+.|.++|.+||-|.=.=++|=|-.. .+=-+..+.+ ...+..+|..+.. --|
T Consensus 405 TWDk~~FP~------P~~Ml~kLa~kgRklV~IvDPHIKkD---~~Y~v~ke~~-------~~gy~VKd~~G~DyeG~C- 467 (915)
T KOG1066|consen 405 TWDKHKFPN------PKDMLKKLASKGRKLVTIVDPHIKKD---DGYFVHKEAK-------DKGYYVKDRDGSDYEGWC- 467 (915)
T ss_pred eeccccCCC------HHHHHHHHHhcCCceEEEeCcccccC---CCeEEhHHhh-------hCCeEEEecCCCcccccc-
Confidence 999999997 89999999999999877777755211 1111111100 0112222222111 123
Q ss_pred cCCCCceeecCCcHHHHHHHHHHHH
Q 041825 183 WMPHGFMAVNTKLGAGKAFLRSLHK 207 (391)
Q Consensus 183 ~~~~~~~~lD~t~p~~~~~~~~~~~ 207 (391)
+||+-..+|+-||.+|+|+.+.+.
T Consensus 468 -WPG~S~yiDf~nP~~r~wW~~~fa 491 (915)
T KOG1066|consen 468 -WPGSSSYIDFINPEARKWWKSQFA 491 (915)
T ss_pred -cCCCcccccccCHHHHHHHhhhcc
Confidence 366667799999999999987754
No 40
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.46 E-value=0.13 Score=55.45 Aligned_cols=130 Identities=12% Similarity=0.144 Sum_probs=71.9
Q ss_pred hhccCCceEEEecc-cccccc-cCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCc
Q 041825 65 RLLPHGYEYVVVDY-LWYRKK-VKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGI 142 (391)
Q Consensus 65 ~l~~~Gy~~v~IDd-gW~~~~-~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~ 142 (391)
.|+++|++.|.|=- ..+... ..| +|..+...++ .+|-. ...||.|++.+|++||++=|-+-+.-
T Consensus 165 yl~~LGvt~i~L~Pi~e~~~~~~wG----------Y~~~~y~~~~-~~~Gt---~~dlk~lV~~~H~~Gi~VilD~V~NH 230 (613)
T TIGR01515 165 YVKELGFTHIELLPVAEHPFDGSWG----------YQVTGYYAPT-SRFGT---PDDFMYFVDACHQAGIGVILDWVPGH 230 (613)
T ss_pred HHHHcCCCEEEECCcccCCCCCCCC----------CCcccCcccc-cccCC---HHHHHHHHHHHHHCCCEEEEEecccC
Confidence 57899999998821 111000 011 2333445555 34542 23799999999999999877665421
Q ss_pred chhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHHHHHH-HhhCCcEEeecC
Q 041825 143 STQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQY-ADWGVDFVKHDC 221 (391)
Q Consensus 143 ~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~ 221 (391)
. + .. ...+. .|.. .+.|...+.. ......| +...+|..+|++++|+-+.++.+ .++|||-+++|.
T Consensus 231 ~-~-~~-~~~~~------~~~~-~~~y~~~~~~-~~~~~~w---~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~ 296 (613)
T TIGR01515 231 F-P-KD-DHGLA------EFDG-TPLYEHKDPR-DGEHWDW---GTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDA 296 (613)
T ss_pred c-C-Cc-cchhh------ccCC-CcceeccCCc-cCcCCCC---CCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcC
Confidence 1 0 00 00000 0110 0111111100 0001112 12467999999999998888876 579999999997
Q ss_pred C
Q 041825 222 A 222 (391)
Q Consensus 222 ~ 222 (391)
+
T Consensus 297 v 297 (613)
T TIGR01515 297 V 297 (613)
T ss_pred H
Confidence 4
No 41
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.78 E-value=0.27 Score=47.25 Aligned_cols=104 Identities=21% Similarity=0.406 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCceeecCCcHHH
Q 041825 119 GFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAG 198 (391)
Q Consensus 119 G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~ 198 (391)
.|+.++++++++|++.|||+..+. +
T Consensus 76 ~l~~~~~~~~~~g~~~glwt~~~l-----------------------------~-------------------------- 100 (261)
T cd06596 76 NLKEVVDYLHANGVETGLWTQSGL-----------------------------R-------------------------- 100 (261)
T ss_pred HHHHHHHHHHHcCCccccccccch-----------------------------h--------------------------
Confidence 499999999999999999964321 1
Q ss_pred HHHHHHHHHHHHhhCCcEEeecCCC-CCCCC--hHHHHHHHHHHHhc-cCCcEEEEeCCCCCCChhHHHhhhccccEEEe
Q 041825 199 KAFLRSLHKQYADWGVDFVKHDCAF-GDDLD--EGEIAVVSEVFKGQ-QNRPIIYSLSPGTSATPAMAQKINGLANMYRV 274 (391)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~-~~~~~--~~~~~~~~~Al~~~-~gr~i~ls~~~~~~~~p~~~~~~~~~an~~Ri 274 (391)
...+....-|+.++|+|--. +..+. ....++..+++++. -.||++++-|.+... ..++-.|
T Consensus 101 -----~~~~ev~~~g~~~~k~Dv~w~g~gy~~~l~~~ka~yeg~~~~~~~RpfiltRsg~aGs--------QRy~~~W-- 165 (261)
T cd06596 101 -----DIAKEVGAAGVRARKTDVAWVGAGYSFALNGVKAAADGIESNSNARPFIVTVDGWAGT--------QRYAGIW-- 165 (261)
T ss_pred -----hhhhhhccCCceEEeccchhhccchhHHHHHHHHHHHHHHhCCCCCCEEEEecCcccc--------CCCCCcc--
Confidence 11234556688889998531 22222 22333444455441 348999998853211 1234333
Q ss_pred cCCCCCChhhHHHHHHHH
Q 041825 275 TGDDWDSWPDVAAHFSVA 292 (391)
Q Consensus 275 s~D~~~~W~~~~~~~~~~ 292 (391)
++|+..+|+.+..++-..
T Consensus 166 sGD~~stWe~Lr~sI~~~ 183 (261)
T cd06596 166 TGDQSGSWEYIRFHIPTY 183 (261)
T ss_pred CCCCcCcHHHHHHHHHHH
Confidence 789999999987765443
No 42
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=94.72 E-value=0.0079 Score=59.97 Aligned_cols=148 Identities=22% Similarity=0.211 Sum_probs=101.6
Q ss_pred HHhhCCcEEeecCCCCCCCC--hHHHHHHHHHHHhccCCcEEEEeCCCCCCChhHHHhhhccccEEEecCCCCCChhhHH
Q 041825 209 YADWGVDFVKHDCAFGDDLD--EGEIAVVSEVFKGQQNRPIIYSLSPGTSATPAMAQKINGLANMYRVTGDDWDSWPDVA 286 (391)
Q Consensus 209 ~a~wGvdylK~D~~~~~~~~--~~~~~~~~~Al~~~~gr~i~ls~~~~~~~~p~~~~~~~~~an~~Ris~D~~~~W~~~~ 286 (391)
+.+|++.+.|+||..++..- .+-|..|.+++.+ -| + ..+.+-||.-| |.|..+.
T Consensus 37 w~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvs-eG----------------~-----~~vGY~yi~iD--DCW~e~~ 92 (414)
T KOG2366|consen 37 WNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVS-EG----------------L-----ADVGYEYINID--DCWSEVT 92 (414)
T ss_pred cccccceeeecccccCCccchhHHHHHHHHHHHHH-hH----------------H-----HhcCcEEEech--hhhhhhc
Confidence 68999999999998776543 3457888888876 32 1 12566677766 6787776
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcccccCCCCCC
Q 041825 287 AHFSVARDFAAANMTGALGLKGKSWPDLDMLPLGWLTDANSTQGPYRACKLTQDEQKTQITLWAMAKSPLMFGGDVRKLD 366 (391)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~wnDpDml~~G~~~~~~~~~g~~~~~~lt~~E~rt~~tlwa~~~sPL~ig~Dl~~l~ 366 (391)
+..+. +-.+....+.+.....-.|.+-++|-+|.+.|.+. .++ ++..+ +.+..|..+.++...|.|+.++|
T Consensus 93 Rd~~g-rLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~-----~TC-~g~PG--S~~~e~~DA~tFA~WgvDylKlD 163 (414)
T KOG2366|consen 93 RDSDG-RLVADPSRFPSGIKALADYVHSKGLKLGIYSDAGN-----FTC-AGYPG--SLGHEESDAKTFADWGVDYLKLD 163 (414)
T ss_pred cCCcc-ccccChhhcccchhhhhhchhhcCCceeeeeccCc-----hhh-ccCCc--ccchhhhhhhhhHhhCCcEEecc
Confidence 55442 11111111111011124578889999999887641 234 44555 88899999999999999999999
Q ss_pred HhHHhhccChhhHhhhcCCCCCC
Q 041825 367 DTTYGLITNPTLLEIDHHSSNNK 389 (391)
Q Consensus 367 ~~~l~lL~N~eviavnQd~~~~~ 389 (391)
--.-.++++++...+.-++++.+
T Consensus 164 ~C~~~~~~~~~~Yp~ms~aLN~t 186 (414)
T KOG2366|consen 164 GCFNNLITMPEGYPIMSRALNNT 186 (414)
T ss_pred ccccccccccccchhHHHHHhcc
Confidence 87788889998888877776653
No 43
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.47 E-value=0.64 Score=40.18 Aligned_cols=123 Identities=12% Similarity=0.051 Sum_probs=71.1
Q ss_pred HHHhhccCCceEEEeccc--ccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEee
Q 041825 62 VAKRLLPHGYEYVVVDYL--WYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVM 139 (391)
Q Consensus 62 ~~~~l~~~Gy~~v~IDdg--W~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~ 139 (391)
+.+-|+.+|.+.|+|..+ +--. +.+ .+.|...|.-+ + +=|+.+++.+|++|+|+=+|++
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~a-----yYP-------t~~~~~hp~L~-~------Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYA-----YYP-------TKVGPRHPGLK-R------DLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEE-----Ecc-------CCCCcCCCCCC-c------CHHHHHHHHHHHCCCEEEEEEe
Confidence 344578889999999664 2110 000 01233333322 1 2489999999999999999998
Q ss_pred cCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCC-ccCCCCceeecCCcHHHHHHHHHHHHH-HHhhCCcEE
Q 041825 140 KGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPC-AWMPHGFMAVNTKLGAGKAFLRSLHKQ-YADWGVDFV 217 (391)
Q Consensus 140 pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c-~~~~~~~~~lD~t~p~~~~~~~~~~~~-~a~wGvdyl 217 (391)
.+....+ + . .+|+|..++..+++..- .....+++.+-++.|-. +|+...++- +..+.+|-|
T Consensus 66 ~~~d~~~-------~--------~-~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~-e~~~~~i~Ei~~~y~~DGi 128 (132)
T PF14871_consen 66 FSWDEDA-------A--------E-RHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYR-EFLLEQIREILDRYDVDGI 128 (132)
T ss_pred eecChHH-------H--------H-hCCceeeECCCCCCcCCCCcCCCCceecCCCccHH-HHHHHHHHHHHHcCCCCEE
Confidence 7643221 1 1 26788887765442111 11111245555555543 666555554 466999988
Q ss_pred eec
Q 041825 218 KHD 220 (391)
Q Consensus 218 K~D 220 (391)
=+|
T Consensus 129 F~D 131 (132)
T PF14871_consen 129 FFD 131 (132)
T ss_pred Eec
Confidence 766
No 44
>PRK14706 glycogen branching enzyme; Provisional
Probab=93.84 E-value=0.45 Score=51.69 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhccCCceEEEeccccccc--ccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCCe
Q 041825 56 LESADIVAKRLLPHGYEYVVVDYLWYRK--KVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLK 133 (391)
Q Consensus 56 ~~~ad~~~~~l~~~Gy~~v~IDdgW~~~--~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk 133 (391)
.+.++.+-.-|+++||+.|.|=---+.. ...| ++..+...|+ .+|-. ...+|.|++.+|++|++
T Consensus 167 ~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wG----------Y~~~~~~~~~-~~~g~---~~~~~~lv~~~H~~gi~ 232 (639)
T PRK14706 167 RELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWG----------YQVTGYYAPT-SRLGT---PEDFKYLVNHLHGLGIG 232 (639)
T ss_pred HHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCC----------cCcccccccc-cccCC---HHHHHHHHHHHHHCCCE
Confidence 3344433346889999999762111100 0001 2233445554 34522 23799999999999999
Q ss_pred EEEEeecCcchhhccCCccccccCCCCCCcccCc-cchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHHHHHH-Hh
Q 041825 134 FGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGR-QWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQY-AD 211 (391)
Q Consensus 134 ~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~-~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~ 211 (391)
+=|=+-+.-. + .... -+ ..| +|. .|...|-. ......|. -..+|..+|++++|+-+.++.+ .+
T Consensus 233 VilD~v~nH~-~-~~~~-~l------~~~--dg~~~y~~~~~~-~g~~~~w~---~~~~~~~~~eVr~~l~~~~~~W~~e 297 (639)
T PRK14706 233 VILDWVPGHF-P-TDES-GL------AHF--DGGPLYEYADPR-KGYHYDWN---TYIFDYGRNEVVMFLIGSALKWLQD 297 (639)
T ss_pred EEEEeccccc-C-cchh-hh------hcc--CCCcceeccCCc-CCcCCCCC---CcccCCCCHHHHHHHHHHHHHHHHH
Confidence 7554332110 0 0000 00 001 011 11111100 01112231 2357999999999998888876 68
Q ss_pred hCCcEEeecCC
Q 041825 212 WGVDFVKHDCA 222 (391)
Q Consensus 212 wGvdylK~D~~ 222 (391)
.+||-+.+|..
T Consensus 298 ~~iDG~R~Dav 308 (639)
T PRK14706 298 FHVDGLRVDAV 308 (639)
T ss_pred hCCCeEEEeee
Confidence 99999999964
No 45
>PLN02361 alpha-amylase
Probab=93.79 E-value=1.3 Score=45.42 Aligned_cols=36 Identities=11% Similarity=-0.040 Sum_probs=30.8
Q ss_pred ceeecCCcHHHHHHHHHHHHHHH-hhCCcEEeecCCC
Q 041825 188 FMAVNTKLGAGKAFLRSLHKQYA-DWGVDFVKHDCAF 223 (391)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~ 223 (391)
.--||.+||.+++++...++-+. +.|||-+.+|+..
T Consensus 146 lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk 182 (401)
T PLN02361 146 VPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAK 182 (401)
T ss_pred CCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 45689999999999988888776 4999999999864
No 46
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=93.74 E-value=0.4 Score=51.60 Aligned_cols=134 Identities=15% Similarity=0.215 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhccCCceEEEe--------cccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHH
Q 041825 55 FLESADIVAKRLLPHGYEYVVV--------DYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKK 126 (391)
Q Consensus 55 v~~~ad~~~~~l~~~Gy~~v~I--------DdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ 126 (391)
..+.|+.+-.-|+++||+.|.| |-+|-. |..|-.-|. ++|-. .++||+|+|.
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGY----------------q~~g~yAp~-sryGt---Pedfk~fVD~ 222 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGY----------------QGTGYYAPT-SRYGT---PEDFKALVDA 222 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCC----------------Ccceecccc-ccCCC---HHHHHHHHHH
Confidence 3444444444588999999987 666643 234445554 56732 2399999999
Q ss_pred HHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCc-cchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHH
Q 041825 127 VHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGR-QWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSL 205 (391)
Q Consensus 127 ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~-~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~ 205 (391)
+|++|+-+=|=+-|+=.. +.. +.-..|+ |+ .+...|.. +...-.|. .+.-|..+++|+.|+-+.
T Consensus 223 aH~~GIgViLD~V~~HF~----~d~-----~~L~~fd--g~~~~e~~~~~-~~~~~~Wg---~~i~~~gr~EVR~Fll~n 287 (628)
T COG0296 223 AHQAGIGVILDWVPNHFP----PDG-----NYLARFD--GTFLYEHEDPR-RGEHTDWG---TAIFNYGRNEVRNFLLAN 287 (628)
T ss_pred HHHcCCEEEEEecCCcCC----CCc-----chhhhcC--CccccccCCcc-cccCCCcc---cchhccCcHHHHHHHHHH
Confidence 999999875544332210 000 0001111 11 11111111 01111232 233445589999998666
Q ss_pred HHH-HHhhCCcEEeecCCC
Q 041825 206 HKQ-YADWGVDFVKHDCAF 223 (391)
Q Consensus 206 ~~~-~a~wGvdylK~D~~~ 223 (391)
+.. +.++.||-|.+|.+.
T Consensus 288 al~Wl~~yHiDGlRvDAV~ 306 (628)
T COG0296 288 ALYWLEEYHIDGLRVDAVA 306 (628)
T ss_pred HHHHHHHhCCcceeeehhh
Confidence 655 578999999999863
No 47
>PRK14705 glycogen branching enzyme; Provisional
Probab=93.58 E-value=0.29 Score=56.54 Aligned_cols=125 Identities=12% Similarity=0.174 Sum_probs=70.8
Q ss_pred HhhccCCceEEEe--------cccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 041825 64 KRLLPHGYEYVVV--------DYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFG 135 (391)
Q Consensus 64 ~~l~~~Gy~~v~I--------DdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~G 135 (391)
..|+++||+.|.| |..|- ++..+...|+ .+|-. .+.||.|++.+|++||++=
T Consensus 773 dYlk~LGvt~IeLmPv~e~p~~~swG----------------Y~~~~y~ap~-~ryGt---~~dfk~lVd~~H~~GI~VI 832 (1224)
T PRK14705 773 DYVKWLGFTHVEFMPVAEHPFGGSWG----------------YQVTSYFAPT-SRFGH---PDEFRFLVDSLHQAGIGVL 832 (1224)
T ss_pred HHHHHhCCCEEEECccccCCCCCCCC----------------CCccccCCcC-cccCC---HHHHHHHHHHHHHCCCEEE
Confidence 3578899999966 22231 2233445555 34532 2389999999999999986
Q ss_pred EEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHHHHHH-HhhCC
Q 041825 136 IHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQY-ADWGV 214 (391)
Q Consensus 136 iy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~wGv 214 (391)
|=+-|.=. + .+..-. ..|+. .+.|...|-... ..-.| + -..+|+.+|++++|+-+.+..+ .+++|
T Consensus 833 LD~V~nH~-~---~d~~~l-----~~fdg-~~~y~~~d~~~g-~~~~W--g-~~~fn~~~~eVr~fli~~a~~Wl~eyhi 898 (1224)
T PRK14705 833 LDWVPAHF-P---KDSWAL-----AQFDG-QPLYEHADPALG-EHPDW--G-TLIFDFGRTEVRNFLVANALYWLDEFHI 898 (1224)
T ss_pred EEeccccC-C---cchhhh-----hhcCC-CcccccCCcccC-CCCCC--C-CceecCCCHHHHHHHHHHHHHHHHHhCC
Confidence 64433211 0 000000 01110 011221121100 01112 1 2468999999999997777765 68999
Q ss_pred cEEeecCC
Q 041825 215 DFVKHDCA 222 (391)
Q Consensus 215 dylK~D~~ 222 (391)
|-+.+|..
T Consensus 899 DGfR~Dav 906 (1224)
T PRK14705 899 DGLRVDAV 906 (1224)
T ss_pred CcEEEeeh
Confidence 99999974
No 48
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.87 E-value=2.3 Score=43.68 Aligned_cols=89 Identities=11% Similarity=0.061 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCC--CceeecCCcH
Q 041825 119 GFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPH--GFMAVNTKLG 196 (391)
Q Consensus 119 G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~--~~~~lD~t~p 196 (391)
-++.+++..|++||++==|+.++... .+-|++...++...- ...+.|+.. ...+ ....||+-||
T Consensus 116 pLa~~I~~AHkr~l~v~aWf~~~~~a---~~~s~~~~~~p~~~~-~~~~~~~~~----------~~~~~~~~~~ldPg~P 181 (418)
T COG1649 116 PLAFVIAEAHKRGLEVHAWFNPYRMA---PPTSPLTKRHPHWLT-TKRPGWVYV----------RHQGWGKRVWLDPGIP 181 (418)
T ss_pred hHHHHHHHHHhcCCeeeechhhcccC---CCCChhHhhCCCCcc-cCCCCeEEE----------ecCCceeeeEeCCCCh
Confidence 48889999999999999999887632 122332222110000 001111111 1111 2578999999
Q ss_pred HHHHHHHHHH-HHHHhhCCcEEeecC
Q 041825 197 AGKAFLRSLH-KQYADWGVDFVKHDC 221 (391)
Q Consensus 197 ~~~~~~~~~~-~~~a~wGvdylK~D~ 221 (391)
++|+|+.+++ +....+-||-|-+|.
T Consensus 182 evq~~i~~lv~evV~~YdvDGIQfDd 207 (418)
T COG1649 182 EVQDFITSLVVEVVRNYDVDGIQFDD 207 (418)
T ss_pred HHHHHHHHHHHHHHhCCCCCceecce
Confidence 9999998886 456889999999995
No 49
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=92.51 E-value=1.2 Score=49.27 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=70.9
Q ss_pred HhhccCCceEEEecccccccc--cCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecC
Q 041825 64 KRLLPHGYEYVVVDYLWYRKK--VKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKG 141 (391)
Q Consensus 64 ~~l~~~Gy~~v~IDdgW~~~~--~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg 141 (391)
..|+++||+.|.|=--+.... ..| ++..+-..++ .+|-. ...||.|++.+|++||++=|=+-+.
T Consensus 258 ~ylk~LG~t~I~LmPi~e~~~~~~wG----------Y~~~~~fa~~-~~~Gt---p~dlk~LVd~aH~~GI~VilDvV~n 323 (758)
T PLN02447 258 PRIKALGYNAVQLMAIQEHAYYGSFG----------YHVTNFFAVS-SRSGT---PEDLKYLIDKAHSLGLRVLMDVVHS 323 (758)
T ss_pred HHHHHcCCCEEEECCccccCCCCCCC----------cCcccCcccc-cccCC---HHHHHHHHHHHHHCCCEEEEEeccc
Confidence 358899999997732222110 001 1223334444 34532 2379999999999999975544332
Q ss_pred cchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHHHHHH-HhhCCcEEeec
Q 041825 142 ISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQY-ADWGVDFVKHD 220 (391)
Q Consensus 142 ~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D 220 (391)
-.. . +.. .+. ..|+.....|...+- ......| + ...+|..+|+++.|+-+.++.+ .++|||-+.+|
T Consensus 324 H~~--~--~~~-~gl---~~fDg~~~~Yf~~~~--~g~~~~w--~-~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfD 390 (758)
T PLN02447 324 HAS--K--NTL-DGL---NGFDGTDGSYFHSGP--RGYHWLW--D-SRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFD 390 (758)
T ss_pred ccc--c--ccc-ccc---cccCCCCccccccCC--CCCcCcC--C-CceecCCCHHHHHHHHHHHHHHHHHhCccccccc
Confidence 110 0 000 000 011110111221110 0011112 1 2368999999999998888876 57999999999
Q ss_pred CC
Q 041825 221 CA 222 (391)
Q Consensus 221 ~~ 222 (391)
.+
T Consensus 391 aV 392 (758)
T PLN02447 391 GV 392 (758)
T ss_pred ch
Confidence 64
No 50
>PRK12568 glycogen branching enzyme; Provisional
Probab=92.46 E-value=1.4 Score=48.56 Aligned_cols=138 Identities=14% Similarity=0.168 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhccCCceEEEecccccccc--cCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCCe
Q 041825 56 LESADIVAKRLLPHGYEYVVVDYLWYRKK--VKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLK 133 (391)
Q Consensus 56 ~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~--~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk 133 (391)
...++.+-.-|+++|++.|.|=--..... ..| .+..|...++ .+|.. ...+|.|++.+|++||+
T Consensus 269 ~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wG----------Y~~~~~~a~~-~~~G~---~~dfk~lV~~~H~~Gi~ 334 (730)
T PRK12568 269 PTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWG----------YQPLGLYAPT-ARHGS---PDGFAQFVDACHRAGIG 334 (730)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccCCCCCCCC----------CCCCcCCccC-cccCC---HHHHHHHHHHHHHCCCE
Confidence 33444333458899999996622111100 001 2334555565 35643 23799999999999999
Q ss_pred EEEEeecCcchhhccCCccccccCCCCCCcccCc-cchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHHHHHH-Hh
Q 041825 134 FGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGR-QWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQY-AD 211 (391)
Q Consensus 134 ~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~-~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~ 211 (391)
+=|=+-+.=. .... ..+ ..|+ |+ .|...|-. ......|. .+.+|..+|++++|+-+.++.+ .+
T Consensus 335 VIlD~V~nH~--~~d~-~~l------~~fd--g~~~Ye~~d~~-~g~~~~W~---~~~~N~~~peVr~~li~~a~~Wl~e 399 (730)
T PRK12568 335 VILDWVSAHF--PDDA-HGL------AQFD--GAALYEHADPR-EGMHRDWN---TLIYNYGRPEVTAYLLGSALEWIEH 399 (730)
T ss_pred EEEEeccccC--Cccc-ccc------ccCC--CccccccCCCc-CCccCCCC---CeecccCCHHHHHHHHHHHHHHHHH
Confidence 7554433211 0000 000 0111 11 11111100 00111221 2467999999999997777765 68
Q ss_pred hCCcEEeecCC
Q 041825 212 WGVDFVKHDCA 222 (391)
Q Consensus 212 wGvdylK~D~~ 222 (391)
.|||-+.+|..
T Consensus 400 yhIDG~R~DAv 410 (730)
T PRK12568 400 YHLDGLRVDAV 410 (730)
T ss_pred hCceEEEEcCH
Confidence 99999999964
No 51
>PLN02784 alpha-amylase
Probab=91.96 E-value=2.7 Score=46.86 Aligned_cols=35 Identities=11% Similarity=-0.041 Sum_probs=30.2
Q ss_pred eeecCCcHHHHHHHHHHHHHH-HhhCCcEEeecCCC
Q 041825 189 MAVNTKLGAGKAFLRSLHKQY-ADWGVDFVKHDCAF 223 (391)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~~ 223 (391)
--||.+||.+++.+...++.+ .+.|||-+.+|+.-
T Consensus 641 PDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVK 676 (894)
T PLN02784 641 PNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVR 676 (894)
T ss_pred CcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccC
Confidence 358899999999998888877 47999999999973
No 52
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=91.81 E-value=1.6 Score=47.20 Aligned_cols=60 Identities=8% Similarity=0.068 Sum_probs=43.8
Q ss_pred eecCCcHHHHHHHHHHHHHH-HhhCCcEEeecCCCCCCCChHHHHHHHHHHHhccCCcEEEEeC
Q 041825 190 AVNTKLGAGKAFLRSLHKQY-ADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQNRPIIYSLS 252 (391)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~~~gr~i~ls~~ 252 (391)
-++..+|++++|+.+.++.+ .+.|||.+.+|... .++.+-.+.+++++++ ....+++--.
T Consensus 288 ~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~--~~~~~~~~~~~~~~~~-~~p~~~ligE 348 (605)
T TIGR02104 288 DTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMG--IHDIETMNEIRKALNK-IDPNILLYGE 348 (605)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechh--cCCHHHHHHHHHHHHh-hCCCeEEEEc
Confidence 36778999999997777776 56999999999752 2444556678888877 6655555433
No 53
>PRK05402 glycogen branching enzyme; Provisional
Probab=91.40 E-value=1.9 Score=47.63 Aligned_cols=130 Identities=14% Similarity=0.179 Sum_probs=68.7
Q ss_pred HhhccCCceEEEecccccccc--cCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecC
Q 041825 64 KRLLPHGYEYVVVDYLWYRKK--VKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKG 141 (391)
Q Consensus 64 ~~l~~~Gy~~v~IDdgW~~~~--~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg 141 (391)
.-|+++|++.|.|==-.+... ..| .|..+...+++ +|-. ...||.|++.+|++||++=|=+-+.
T Consensus 273 ~ylk~LGv~~i~L~Pi~e~~~~~~~G----------Y~~~~y~ai~~-~~Gt---~~dfk~lV~~~H~~Gi~VilD~V~N 338 (726)
T PRK05402 273 PYVKEMGFTHVELLPIAEHPFDGSWG----------YQPTGYYAPTS-RFGT---PDDFRYFVDACHQAGIGVILDWVPA 338 (726)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCC----------CCcccCCCcCc-ccCC---HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 358899999997632221110 001 12233344442 2322 2379999999999999975533221
Q ss_pred cchhhccCCccccccCCCCCCcccCc-cchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHHHHHH-HhhCCcEEee
Q 041825 142 ISTQAVNANTLIYDYDKGGPYMEAGR-QWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQY-ADWGVDFVKH 219 (391)
Q Consensus 142 ~~~~a~~~~s~i~~~~~~~~~~~~g~-~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~ 219 (391)
- ++.. ...+ ..|. +. .|...+... .....| +...+|..+|++++|+.+.++.+ .+.|||-+.+
T Consensus 339 H--~~~~-~~~~------~~~~--~~~~y~~~~~~~-~~~~~w---~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~ 403 (726)
T PRK05402 339 H--FPKD-AHGL------ARFD--GTALYEHADPRE-GEHPDW---GTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRV 403 (726)
T ss_pred C--CCCC-ccch------hccC--CCcceeccCCcC-CccCCC---CCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 1 0000 0000 0111 11 011111000 011112 12357999999999998888876 5799999999
Q ss_pred cCC
Q 041825 220 DCA 222 (391)
Q Consensus 220 D~~ 222 (391)
|.+
T Consensus 404 D~v 406 (726)
T PRK05402 404 DAV 406 (726)
T ss_pred CCH
Confidence 964
No 54
>PLN02960 alpha-amylase
Probab=91.23 E-value=1.4 Score=49.15 Aligned_cols=132 Identities=13% Similarity=0.161 Sum_probs=69.8
Q ss_pred HhhccCCceEEEecccccccc--cCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecC
Q 041825 64 KRLLPHGYEYVVVDYLWYRKK--VKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKG 141 (391)
Q Consensus 64 ~~l~~~Gy~~v~IDdgW~~~~--~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg 141 (391)
..|+++||+.|.|=---+... ..| +|..+...++ .+|-. ...+|.|++.+|++||++=|=+-+.
T Consensus 424 dYLk~LGvt~IeLmPv~e~~~~~swG----------Y~~~~yfa~~-~~yGt---p~dfk~LVd~aH~~GI~VILDvV~N 489 (897)
T PLN02960 424 PHVKKAGYNAIQLIGVQEHKDYSSVG----------YKVTNFFAVS-SRFGT---PDDFKRLVDEAHGLGLLVFLDIVHS 489 (897)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCC----------CCcccCCCcc-cccCC---HHHHHHHHHHHHHCCCEEEEEeccc
Confidence 358899999997722111100 001 2223334444 23322 2379999999999999975544332
Q ss_pred cchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHHHHHH-HhhCCcEEeec
Q 041825 142 ISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQY-ADWGVDFVKHD 220 (391)
Q Consensus 142 ~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D 220 (391)
-. + ++.+. +. ..|......|...+- ......|. ...+|+.+|++++|+-+.++.+ .+++||.+.+|
T Consensus 490 H~--~--~d~~~-~L---~~FDG~~~~Yf~~~~--~g~~~~WG---~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~D 556 (897)
T PLN02960 490 YA--A--ADEMV-GL---SLFDGSNDCYFHSGK--RGHHKRWG---TRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFH 556 (897)
T ss_pred cc--C--Ccccc-ch---hhcCCCccceeecCC--CCccCCCC---CcccCCCCHHHHHHHHHHHHHHHHHHCCCceeec
Confidence 10 0 00000 00 011110001111110 00111231 2357899999999998888876 68999999999
Q ss_pred CC
Q 041825 221 CA 222 (391)
Q Consensus 221 ~~ 222 (391)
.+
T Consensus 557 AV 558 (897)
T PLN02960 557 SL 558 (897)
T ss_pred cc
Confidence 75
No 55
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=90.74 E-value=4.3 Score=41.44 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHcCCeEEEEeec
Q 041825 119 GFTEIAKKVHDIGLKFGIHVMK 140 (391)
Q Consensus 119 G~k~lad~ih~~Glk~Giy~~p 140 (391)
=++.|++.+|+.|||||+|..+
T Consensus 129 iv~el~~A~rk~Glk~G~Y~S~ 150 (384)
T smart00812 129 LVGELADAVRKRGLKFGLYHSL 150 (384)
T ss_pred hHHHHHHHHHHcCCeEEEEcCH
Confidence 3899999999999999999875
No 56
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=90.59 E-value=2.4 Score=45.24 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=30.6
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCC
Q 041825 189 MAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCA 222 (391)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (391)
.-||.++|++++++...++.+.+-|||.+.+|..
T Consensus 162 pdln~~np~v~~~i~~~~~~W~~~giDGfRlDa~ 195 (543)
T TIGR02403 162 ADLNWENPEVREELKDVVNFWRDKGVDGFRLDVI 195 (543)
T ss_pred CccCCCCHHHHHHHHHHHHHHHHcCCCEEEEeee
Confidence 3589999999999998889888899999999965
No 57
>PRK10785 maltodextrin glucosidase; Provisional
Probab=90.45 E-value=3.6 Score=44.41 Aligned_cols=176 Identities=10% Similarity=0.088 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHc
Q 041825 51 SEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDI 130 (391)
Q Consensus 51 ~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~ 130 (391)
+-+.|.+.++. |+++|++.|-|===.......| +|..-...+|| +|-. ...++.|++.+|++
T Consensus 177 Dl~GI~~kLdY----L~~LGv~~I~L~Pif~s~s~hg----------Yd~~Dy~~iDp-~~Gt---~~df~~Lv~~aH~r 238 (598)
T PRK10785 177 DLDGISEKLPY----LKKLGVTALYLNPIFTAPSVHK----------YDTEDYRHVDP-QLGG---DAALLRLRHATQQR 238 (598)
T ss_pred CHHHHHHHHHH----HHHcCCCEEEeCCcccCCCCCC----------cCcccccccCc-ccCC---HHHHHHHHHHHHHC
Confidence 44666776664 6789999886633222211111 12222233442 2322 34799999999999
Q ss_pred CCeEEEEeecCcchhhccCCccccccCC---CCCCcc-c--CccchhhhccccCCCCccCCCCceeecCCcHHHHHHHHH
Q 041825 131 GLKFGIHVMKGISTQAVNANTLIYDYDK---GGPYME-A--GRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRS 204 (391)
Q Consensus 131 Glk~Giy~~pg~~~~a~~~~s~i~~~~~---~~~~~~-~--g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~ 204 (391)
|||+=|=+.+. -|+ ..++...... .+.|.. + ..+|....-. ....|-+...+.-.||..+|++++|+..
T Consensus 239 GikVilD~V~N--H~~--~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~-~~~~~w~g~~~lPdLN~~np~v~~~l~~ 313 (598)
T PRK10785 239 GMRLVLDGVFN--HTG--DSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDD-GRALDWLGYASLPKLDFQSEEVVNEIYR 313 (598)
T ss_pred CCEEEEEECCC--cCC--CCCHHHHHhhccccccccCCCCCcceeeEECCC-CCcCCcCCCCcCccccCCCHHHHHHHHh
Confidence 99974432211 111 1122111100 011110 0 0112110000 0011211112345789999999999853
Q ss_pred ----HHHHHH-h-hCCcEEeecCCCC--CC----CChHHHHHHHHHHHhccCCcEEEE
Q 041825 205 ----LHKQYA-D-WGVDFVKHDCAFG--DD----LDEGEIAVVSEVFKGQQNRPIIYS 250 (391)
Q Consensus 205 ----~~~~~a-~-wGvdylK~D~~~~--~~----~~~~~~~~~~~Al~~~~gr~i~ls 250 (391)
.++.+. + .|||.+.+|.... +. .+.+-.+.+++++++ ...++++.
T Consensus 314 ~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~-~~pd~~li 370 (598)
T PRK10785 314 GEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKE-ENPEAYVL 370 (598)
T ss_pred hhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHh-hCCCeEEE
Confidence 566654 3 7999999997521 10 112334677888887 66665543
No 58
>PRK12313 glycogen branching enzyme; Provisional
Probab=90.28 E-value=3.3 Score=44.93 Aligned_cols=130 Identities=16% Similarity=0.191 Sum_probs=69.1
Q ss_pred HhhccCCceEEEecccccccc--cCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecC
Q 041825 64 KRLLPHGYEYVVVDYLWYRKK--VKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKG 141 (391)
Q Consensus 64 ~~l~~~Gy~~v~IDdgW~~~~--~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg 141 (391)
..|+++|++.|.|=--++... ..| .|..+...+++ +|-. .+.+|.|++.+|++||++=|=+-+.
T Consensus 178 ~yl~~LGv~~i~L~Pi~~~~~~~~~G----------Y~~~~y~~i~~-~~Gt---~~d~k~lv~~~H~~Gi~VilD~V~n 243 (633)
T PRK12313 178 PYVKEMGYTHVEFMPLMEHPLDGSWG----------YQLTGYFAPTS-RYGT---PEDFMYLVDALHQNGIGVILDWVPG 243 (633)
T ss_pred HHHHHcCCCEEEeCchhcCCCCCCCC----------CCCcCcCcCCC-CCCC---HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 357889999997632222110 001 22333444542 3422 2479999999999999975533221
Q ss_pred cchhhccCCccccccCCCCCCcccCc-cchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHHHHHH-HhhCCcEEee
Q 041825 142 ISTQAVNANTLIYDYDKGGPYMEAGR-QWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHKQY-ADWGVDFVKH 219 (391)
Q Consensus 142 ~~~~a~~~~s~i~~~~~~~~~~~~g~-~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~ 219 (391)
= +.. +.... ..|. +. .|...+-. ......|. ...+|..+|++++|+-+.++.+ .++|||-+.+
T Consensus 244 H--~~~--~~~~~-----~~~~--~~~~~~~~~~~-~~~~~~w~---~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~ 308 (633)
T PRK12313 244 H--FPK--DDDGL-----AYFD--GTPLYEYQDPR-RAENPDWG---ALNFDLGKNEVRSFLISSALFWLDEYHLDGLRV 308 (633)
T ss_pred C--CCC--Ccccc-----cccC--CCcceeecCCC-CCcCCCCC---CcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 1 000 00000 0111 11 11101100 00001121 2467899999999998888876 5699999999
Q ss_pred cCC
Q 041825 220 DCA 222 (391)
Q Consensus 220 D~~ 222 (391)
|.+
T Consensus 309 D~~ 311 (633)
T PRK12313 309 DAV 311 (633)
T ss_pred cCh
Confidence 954
No 59
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=89.82 E-value=7.3 Score=41.56 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=40.0
Q ss_pred eecCCcH---HHHHHHHHHHHHH-HhhCCcEEeecCCCC-CCCCh-HHHHHHHHHHHhccC---CcEEEEe
Q 041825 190 AVNTKLG---AGKAFLRSLHKQY-ADWGVDFVKHDCAFG-DDLDE-GEIAVVSEVFKGQQN---RPIIYSL 251 (391)
Q Consensus 190 ~lD~t~p---~~~~~~~~~~~~~-a~wGvdylK~D~~~~-~~~~~-~~~~~~~~Al~~~~g---r~i~ls~ 251 (391)
.+|.++| ++++|+-+.++.+ .++|||-+.+|.... ..... +-.+.+++++++ .. |++++-.
T Consensus 210 ~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~-~~p~~~~~~li~ 279 (542)
T TIGR02402 210 AINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHE-LAAELRPVHLIA 279 (542)
T ss_pred ccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHH-HCCCCceEEEEE
Confidence 4788888 9999987777766 579999999997421 11111 224566777776 43 3355543
No 60
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=89.53 E-value=2.6 Score=42.22 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCeEEEEeecC
Q 041825 120 FTEIAKKVHDIGLKFGIHVMKG 141 (391)
Q Consensus 120 ~k~lad~ih~~Glk~Giy~~pg 141 (391)
++.|++.+|+.|||||+|.++.
T Consensus 140 v~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 140 VGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp HHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHHHHHHcCCeEEEEecch
Confidence 7999999999999999999875
No 61
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=88.81 E-value=5.2 Score=42.80 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=30.9
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCC
Q 041825 189 MAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCA 222 (391)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (391)
.-||.++|++++++.+.++.+.+.|||.+.+|..
T Consensus 169 pdLn~~np~V~~~l~~~~~~W~~~GvDGfRlDa~ 202 (551)
T PRK10933 169 ADLNWENPAVRAELKKVCEFWADRGVDGLRLDVV 202 (551)
T ss_pred CccCCCCHHHHHHHHHHHHHHHHCCCcEEEEcch
Confidence 4689999999999999999988999999999964
No 62
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=87.09 E-value=5.8 Score=42.23 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=30.8
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCC
Q 041825 189 MAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCA 222 (391)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (391)
.-||.++|++++++.+.++.+.+.|||.+.+|.+
T Consensus 166 pdln~~np~vr~~l~~~~~~w~~~GvDGfRlDav 199 (539)
T TIGR02456 166 PDLNYDNPAVHDAVHDVMRFWLDLGVDGFRLDAV 199 (539)
T ss_pred CccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecH
Confidence 4589999999999998999988899999999975
No 63
>PRK03705 glycogen debranching enzyme; Provisional
Probab=86.48 E-value=5.3 Score=43.64 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=28.6
Q ss_pred eecCCcHHHHHHHHHHHHHHH-hhCCcEEeecCC
Q 041825 190 AVNTKLGAGKAFLRSLHKQYA-DWGVDFVKHDCA 222 (391)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~ 222 (391)
.++..+|.+++|+...++.+. ++|||-+.+|-.
T Consensus 305 ~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 305 TLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcH
Confidence 578899999999987788775 699999999974
No 64
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=86.45 E-value=6.2 Score=44.58 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=47.4
Q ss_pred ecCCcHHHHHHHHHHHHHH-HhhCCcEEeecCCCCCCCChHHHHHHHHHHHhccCCcEEEEeCCC
Q 041825 191 VNTKLGAGKAFLRSLHKQY-ADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQNRPIIYSLSPG 254 (391)
Q Consensus 191 lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~~~gr~i~ls~~~~ 254 (391)
+++.||.+++|+...++.+ .++|||-+.+|-+. ..+.+-...+++++++ ...++++--..|
T Consensus 466 ~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~--~~~~~f~~~~~~~l~~-i~pdi~l~GEgW 527 (898)
T TIGR02103 466 TATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMG--HHPKAQMLAAREAIKA-LTPEIYFYGEGW 527 (898)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechh--hCCHHHHHHHHHHHHH-hCCCEEEEecCC
Confidence 4678999999987777776 58999999999864 3455667788889988 777777655544
No 65
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=83.04 E-value=13 Score=43.03 Aligned_cols=60 Identities=22% Similarity=0.160 Sum_probs=43.3
Q ss_pred eecCCcHHHHHHHHHHHHHH-HhhCCcEEeecCCCCCCCChHHHHHHHHHHHhccCCcEEEEeC
Q 041825 190 AVNTKLGAGKAFLRSLHKQY-ADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQNRPIIYSLS 252 (391)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~~~gr~i~ls~~ 252 (391)
.++..||.+++|+-..++.+ .++|||.+.+|.+. ..+.+....+++++++ ....+++-..
T Consensus 611 ~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g--~~d~~~~~~~~~~l~~-~dP~~~liGE 671 (1111)
T TIGR02102 611 RLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMG--DHDAASIEIAYKEAKA-INPNIIMIGE 671 (1111)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccc--cCCHHHHHHHHHHHHH-hCcCEEEEEe
Confidence 46789999999987777776 57999999999864 2444556667777776 5555554433
No 66
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=81.78 E-value=13 Score=36.91 Aligned_cols=84 Identities=17% Similarity=0.070 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchh--hhccccCCCCccCCCCceeecCCcHHHH
Q 041825 122 EIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRA--QDIAIKEKPCAWMPHGFMAVNTKLGAGK 199 (391)
Q Consensus 122 ~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~--~di~~~~~~c~~~~~~~~~lD~t~p~~~ 199 (391)
+-++.+|+.|-++=-|+.-|... .++ +- |.+ +|.. .+... ...-.| +++ +.+|.++|+-+
T Consensus 85 ~~i~~Lk~~g~~viaYlSvGe~E-~~R---~y--------~~~---~~~~~~~~~l~-~~n~~W-~g~-~~vd~~~~~W~ 146 (315)
T TIGR01370 85 EEIVRAAAAGRWPIAYLSIGAAE-DYR---FY--------WQK---GWKVNAPAWLG-NEDPDW-PGN-YDVKYWDPEWK 146 (315)
T ss_pred HHHHHHHhCCcEEEEEEEchhcc-ccc---hh--------hhh---hhhcCCHHHhC-CCCCCC-CCc-eeEecccHHHH
Confidence 44567999999998899877521 000 00 000 0100 00001 111123 333 78999999999
Q ss_pred HHHHHHHHHHHhhCCcEEeecCCC
Q 041825 200 AFLRSLHKQYADWGVDFVKHDCAF 223 (391)
Q Consensus 200 ~~~~~~~~~~a~wGvdylK~D~~~ 223 (391)
+++...++.+.+-|||.|=+|.+.
T Consensus 147 ~il~~rl~~l~~kGfDGvfLD~lD 170 (315)
T TIGR01370 147 AIAFSYLDRVIAQGFDGVYLDLID 170 (315)
T ss_pred HHHHHHHHHHHHcCCCeEeeccch
Confidence 998877888889999999999863
No 67
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=81.38 E-value=14 Score=40.61 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=27.5
Q ss_pred eecCCcHHHHHHHHHHHHHH-HhhCCcEEeecCC
Q 041825 190 AVNTKLGAGKAFLRSLHKQY-ADWGVDFVKHDCA 222 (391)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~ 222 (391)
.|+.+||-+++++-.-++.+ .+++||.+.+|-.
T Consensus 328 tln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa 361 (697)
T COG1523 328 TLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLA 361 (697)
T ss_pred ccccCChHHHHHHHHHHHHHHHHhCCCceeecch
Confidence 58889999999985555665 6899999999965
No 68
>PLN02877 alpha-amylase/limit dextrinase
Probab=80.00 E-value=21 Score=40.78 Aligned_cols=60 Identities=8% Similarity=-0.006 Sum_probs=42.8
Q ss_pred cCCcHHHHHHHHHHHHHH-HhhCCcEEeecCCCCCCCChHHHHHHHHHHHhcc--------CCcEEEEeCCC
Q 041825 192 NTKLGAGKAFLRSLHKQY-ADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQ--------NRPIIYSLSPG 254 (391)
Q Consensus 192 D~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~~~--------gr~i~ls~~~~ 254 (391)
...||.+++++-..++.+ .++|||-+.+|-+.. ++.+.....+.+|++ . |+.|++--..|
T Consensus 530 Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~--i~~~tm~~~~~~L~~-i~~~~~~~dg~~i~lyGEgW 598 (970)
T PLN02877 530 ASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGH--LMKRTMVRAKDALQS-LTLERDGVDGSSIYLYGEGW 598 (970)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCEEEEEcccc--ccHHHHHHHHHHHHH-HhhhhcccCCCceEEEEeCC
Confidence 457899999986666776 579999999998643 445555666666666 3 56677765554
No 69
>PLN03244 alpha-amylase; Provisional
Probab=74.92 E-value=8.2 Score=42.86 Aligned_cols=34 Identities=12% Similarity=-0.012 Sum_probs=29.9
Q ss_pred eeecCCcHHHHHHHHHHHHHH-HhhCCcEEeecCC
Q 041825 189 MAVNTKLGAGKAFLRSLHKQY-ADWGVDFVKHDCA 222 (391)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~ 222 (391)
..+|..+|++++|+-+.++.+ .+++||.+.+|.+
T Consensus 499 ~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaV 533 (872)
T PLN03244 499 RMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSL 533 (872)
T ss_pred ceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecc
Confidence 467999999999998888876 6899999999975
No 70
>PRK09936 hypothetical protein; Provisional
Probab=72.66 E-value=14 Score=36.20 Aligned_cols=95 Identities=15% Similarity=0.249 Sum_probs=58.6
Q ss_pred CchhHHHHHHHHHHHhhcccccccccccccCCCCCCceEeeccccccccCCHHHHHHHHHHHHHhhccCCceEEEecccc
Q 041825 1 MKFFALSILCFFSSLLLHRIPSANAADKETEHAALPPRGWNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLW 80 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pPmGWnSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW 80 (391)
||.|+..+++++++.-. +.| + .|. -|.-|+. ..+++.+...+..+. ++..|++.++|= |
T Consensus 1 m~~~~~~~l~~l~~~~~--~~a----~--~g~------F~Qp~n~-d~~~~~~qWq~~~~~----~~~~G~~tLivQ--W 59 (296)
T PRK09936 1 MRKFIFVLLTLLLVSPF--SQA----M--KGI------FYQPQNR-DSQVTDTQWQGLWSQ----LRLQGFDTLVVQ--W 59 (296)
T ss_pred ChhHHHHHHHHHHcCch--hhc----c--ccc------eeccccc-cCCCCHHHHHHHHHH----HHHcCCcEEEEE--e
Confidence 78887776665543321 112 1 122 2555554 346888888887764 667888888884 5
Q ss_pred cccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCCe--EEEEeecC
Q 041825 81 YRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLK--FGIHVMKG 141 (391)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk--~Giy~~pg 141 (391)
.. +|+- .|+... .=+..+.+..+++||| +|||.+|.
T Consensus 60 t~------------------yG~~-----~fg~~~--g~La~~l~~A~~~Gl~v~vGL~~Dp~ 97 (296)
T PRK09936 60 TR------------------YGDA-----DFGGQR--GWLAKRLAAAQQAGLKLVVGLYADPE 97 (296)
T ss_pred ee------------------ccCC-----Ccccch--HHHHHHHHHHHHcCCEEEEcccCChH
Confidence 43 3322 355321 1378888999999998 69998873
No 71
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=70.58 E-value=5.8 Score=37.34 Aligned_cols=143 Identities=15% Similarity=0.247 Sum_probs=80.6
Q ss_pred cCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCC-CCCCCCCCCCCHHHHHHHH
Q 041825 49 IISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDP-ERWPSSKGGKGFTEIAKKV 127 (391)
Q Consensus 49 ~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~-~kFP~~~~~~G~k~lad~i 127 (391)
.++++.|....+..-+.|.+.||+.|.+=+- | .+..+..+. --||+- =+.+++..+
T Consensus 66 ~ls~~~v~~~lq~~i~~le~~G~d~illlCT-------G------------~F~~l~~~~~lleP~r----il~~lV~al 122 (221)
T PF07302_consen 66 VLSKKKVEPRLQACIAQLEAQGYDVILLLCT-------G------------EFPGLTARNPLLEPDR----ILPPLVAAL 122 (221)
T ss_pred EEEHHHHHHHHHHHHHHHHHCCCCEEEEecc-------C------------CCCCCCCCcceeehHH----hHHHHHHHh
Confidence 4788888888775445688899999987430 1 122222221 234431 267788888
Q ss_pred HHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHHHH
Q 041825 128 HDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLHK 207 (391)
Q Consensus 128 h~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~~ 207 (391)
... .+.|+-+ |-...... . -..|.. ... ..| +....+-++. .+-+..-++
T Consensus 123 ~~~-~~vGViv-P~~eQ~~~-----~------------~~kW~~--l~~--~~~------~a~asPy~~~-~~~l~~Aa~ 172 (221)
T PF07302_consen 123 VGG-HQVGVIV-PLPEQIAQ-----Q------------AEKWQP--LGN--PVV------VAAASPYEGD-EEELAAAAR 172 (221)
T ss_pred cCC-CeEEEEe-cCHHHHHH-----H------------HHHHHh--cCC--CeE------EEEeCCCCCC-HHHHHHHHH
Confidence 776 8999965 32211100 0 011211 000 000 1111111111 223444568
Q ss_pred HHHhhCCcEEeecCCCCCCCChHHHHHHHHHHHhccCCcEEEEe
Q 041825 208 QYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQNRPIIYSL 251 (391)
Q Consensus 208 ~~a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~~~gr~i~ls~ 251 (391)
.++++|.|+|-+||++ |+ ..|++.+++++|.|++++-
T Consensus 173 ~L~~~gadlIvLDCmG---Yt----~~~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 173 ELAEQGADLIVLDCMG---YT----QEMRDIVQRALGKPVLLSR 209 (221)
T ss_pred HHHhcCCCEEEEECCC---CC----HHHHHHHHHHhCCCEEeHH
Confidence 8999999999999984 22 4577777777999999974
No 72
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=69.26 E-value=15 Score=40.13 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=27.4
Q ss_pred ecCCcHHHHHHHHHHHHHH-HhhCCcEEeecCC
Q 041825 191 VNTKLGAGKAFLRSLHKQY-ADWGVDFVKHDCA 222 (391)
Q Consensus 191 lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~ 222 (391)
++..||++++++-+.++-+ .++.||.+.+|..
T Consensus 372 fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ 404 (757)
T KOG0470|consen 372 FNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLV 404 (757)
T ss_pred ccCCCHHHHHHHHHHHHHHHHheeccceEEcch
Confidence 4668999999997777765 7899999999985
No 73
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=67.20 E-value=16 Score=38.26 Aligned_cols=52 Identities=17% Similarity=0.077 Sum_probs=40.9
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHh-hCCcEEeecCCCCCCCChHHHHHHHHHHHh
Q 041825 188 FMAVNTKLGAGKAFLRSLHKQYAD-WGVDFVKHDCAFGDDLDEGEIAVVSEVFKG 241 (391)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~-wGvdylK~D~~~~~~~~~~~~~~~~~Al~~ 241 (391)
..-||..+|++++++...++.+.+ .|||.+.+|... .+..+-...+.+++++
T Consensus 200 lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk--~v~~~f~~~~~~~~~~ 252 (479)
T PRK09441 200 GADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVK--HIDAWFIKEWIEHVRE 252 (479)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhc--CCCHHHHHHHHHHHHH
Confidence 346899999999999888888765 999999999863 2444556677778776
No 74
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=65.86 E-value=1.3e+02 Score=29.29 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=26.2
Q ss_pred ccCCHHHHHHHHHHH---HHhhccCCceEEEeccc
Q 041825 48 WIISEQEFLESADIV---AKRLLPHGYEYVVVDYL 79 (391)
Q Consensus 48 ~~i~e~~v~~~ad~~---~~~l~~~Gy~~v~IDdg 79 (391)
...|+++|.+.++.+ ++.++++||+-|.|-.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~ 163 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGA 163 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcch
Confidence 468999999999854 35678899999999764
No 75
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=65.23 E-value=15 Score=34.79 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=42.7
Q ss_pred CceeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCCCCCCCChHHHHHHHHHHHh
Q 041825 187 GFMAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKG 241 (391)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~ 241 (391)
....||..+|++++++...++.+.+.|||.+.+|... .+..+-.+.+.+++++
T Consensus 135 ~~~dln~~n~~v~~~i~~~~~~w~~~giDGfR~D~~~--~~~~~~~~~~~~~~~~ 187 (316)
T PF00128_consen 135 DLPDLNYENPEVREYIIDVLKFWIEEGIDGFRLDAAK--HIPKEFWKEFRDEVKE 187 (316)
T ss_dssp TSEEBETTSHHHHHHHHHHHHHHHHTTESEEEETTGG--GSSHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhcccccchhhceEeEEEEcccc--ccchhhHHHHhhhhhh
Confidence 3567999999999999888888999999999999863 2444556677777776
No 76
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=64.68 E-value=38 Score=36.40 Aligned_cols=234 Identities=15% Similarity=0.205 Sum_probs=103.0
Q ss_pred ccCCCCCCceEeeccccccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCC
Q 041825 29 ETEHAALPPRGWNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDP 108 (391)
Q Consensus 29 ~~~~~~~pPmGWnSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~ 108 (391)
+.-+.+-|=.||=|= |....+.++..+.++.|. .+-.+.++.=| |+-+... +-.+ +.-.++
T Consensus 96 SsdW~~fPRYGfls~--f~~~~~~~~~~~~i~~L~----~yHIN~~QFYD-W~~rH~~----Pl~~-------~~~~~~- 156 (559)
T PF13199_consen 96 SSDWTRFPRYGFLSD--FDKSKSAEDIEAEIDQLN----RYHINGLQFYD-WMYRHHK----PLPG-------TNGQPD- 156 (559)
T ss_dssp -SSTTSS--EEEE-----GGGGGHHHHHHHHHHHH----HTT--EEEETS---SBTTB-----S-S-------SS-EEE-
T ss_pred cCCcccCCcceEecC--CCCcCCchhHHHHHHHHH----hhCcCeEEEEe-eccccCC----cCCC-------CCCchh-
Confidence 345555566676553 344446677777777554 34444555432 6554311 1000 001111
Q ss_pred CCCCCCCCC----CCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccC
Q 041825 109 ERWPSSKGG----KGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWM 184 (391)
Q Consensus 109 ~kFP~~~~~----~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~ 184 (391)
..|++..+- .=+|..++.+|++|||.=.|.+-.-....+.+ .++..+ ...|...... ..+.. ...-.|
T Consensus 157 ~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~~-~gv~~e--W~ly~d~~~~--~~~~~--~l~~~w- 228 (559)
T PF13199_consen 157 QTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANNNYEE-DGVSPE--WGLYKDDSHS--NQDTY--DLPDGW- 228 (559)
T ss_dssp -TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEETT--S---SS-G--GBEEESSSBT--SB-EE--EETT-E-
T ss_pred hhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccccCccc-ccCCch--hhhhhccCCC--cccee--ecCccc-
Confidence 234331100 03799999999999999999765322111100 111111 0111111000 00000 000012
Q ss_pred CCCceeecCCcHHHHHHHHHHH-HHHHhhCCcEEeecCCCCC---------CC-C-hHHHHHHHHHHHhcc-CCcEEEEe
Q 041825 185 PHGFMAVNTKLGAGKAFLRSLH-KQYADWGVDFVKHDCAFGD---------DL-D-EGEIAVVSEVFKGQQ-NRPIIYSL 251 (391)
Q Consensus 185 ~~~~~~lD~t~p~~~~~~~~~~-~~~a~wGvdylK~D~~~~~---------~~-~-~~~~~~~~~Al~~~~-gr~i~ls~ 251 (391)
+...|..|+.+|+=|.|+.+.+ +.+...|||.+-+|=.+.+ .. + .+.|..+-++++++. +.++++.-
T Consensus 229 ~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~ 308 (559)
T PF13199_consen 229 PSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNA 308 (559)
T ss_dssp --EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-
T ss_pred ccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeec
Confidence 1236899999999999985555 5678899999999976431 11 1 346777777777645 45666653
Q ss_pred C-CCCCCChhHHH---hhhccccEEEecCCCCCChhhHHHHHHHHHHH
Q 041825 252 S-PGTSATPAMAQ---KINGLANMYRVTGDDWDSWPDVAAHFSVARDF 295 (391)
Q Consensus 252 ~-~~~~~~p~~~~---~~~~~an~~Ris~D~~~~W~~~~~~~~~~~~~ 295 (391)
- .++. ...+. .=.-|...| |..++..++.+.++..+.+
T Consensus 309 V~~~g~--~~~a~~~~~d~lY~EvW----~~~~~Y~~Lk~~i~~~r~~ 350 (559)
T PF13199_consen 309 VSGYGI--EQIAKTSKVDFLYNEVW----DDYDTYGDLKRIIDQNRKY 350 (559)
T ss_dssp GGGTTH--HHHTT-S--SSEEEE------SBS-BHHHHHHHHHHHHHH
T ss_pred cCccch--hhhhcccccceeeeecc----cccccHHHHHHHHHHHhhh
Confidence 2 2110 00000 001256677 3445567788888877776
No 77
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=64.49 E-value=35 Score=37.66 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=29.1
Q ss_pred eecCCcHHHHHHHHHHHHHHH-hhCCcEEeecCCC
Q 041825 190 AVNTKLGAGKAFLRSLHKQYA-DWGVDFVKHDCAF 223 (391)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~ 223 (391)
.+|.++|.+++|+...++.+. +.|||-+.+|...
T Consensus 310 ~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~ 344 (688)
T TIGR02100 310 TLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLAT 344 (688)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechh
Confidence 589999999999977778775 7999999999753
No 78
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=63.95 E-value=45 Score=39.29 Aligned_cols=33 Identities=21% Similarity=0.104 Sum_probs=28.8
Q ss_pred eecCCcHHHHHHHHHHHHHHHhhCCcEEeecCC
Q 041825 190 AVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCA 222 (391)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (391)
.+|..||.+++++...++.+.+.|||-+.+|-.
T Consensus 312 ~~n~~~p~v~~~i~d~lr~Wv~~gVDGfRfDla 344 (1221)
T PRK14510 312 LPNLERPFILRLPMDVLRSWAKRGVDGFRLDLA 344 (1221)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCEEEEech
Confidence 467889999999988888887799999999974
No 79
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=63.85 E-value=77 Score=30.28 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhCCcEEeecCCCCCCCChHHHHHHHHHHHhccCCcEEEEeCC
Q 041825 198 GKAFLRSLHKQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~~~gr~i~ls~~~ 253 (391)
.+.|+.++.+.+.++|||.|-+|+-++. +.+.|..+-+.|++..++..++++.+
T Consensus 97 r~~f~~s~~~~~~~~~~DGiDiDwE~p~--~~~~~~~ll~~Lr~~~~~~~~lT~Ap 150 (256)
T cd06546 97 FERYYGQLRDMIRRRGLDGLDLDVEEPM--SLDGIIRLIDRLRSDFGPDFIITLAP 150 (256)
T ss_pred HHHHHHHHHHHHHHhCCCceEEeeecCC--CHhHHHHHHHHHHHHhCCCcEEEECC
Confidence 4567788888889999999999986542 34567777777776567777777654
No 80
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=63.71 E-value=45 Score=31.23 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhCCcEEeecCCCCCCCChHHHHHHHHHHHhccCCc----EEEEe
Q 041825 201 FLRSLHKQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQNRP----IIYSL 251 (391)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~~~gr~----i~ls~ 251 (391)
.+....+...+.|.||||.-.-.....+.+..+.|++++.+ +..| |.++-
T Consensus 147 ~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~-~~~p~~~~Vk~sG 200 (236)
T PF01791_consen 147 LIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEA-APVPGKVGVKASG 200 (236)
T ss_dssp HHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHT-HSSTTTSEEEEES
T ss_pred HHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHh-cCCCcceEEEEeC
Confidence 44555677789999999998753333445678889999998 8777 77764
No 81
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=62.08 E-value=8.9 Score=35.39 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHcCCeEEEEeecCcchh
Q 041825 119 GFTEIAKKVHDIGLKFGIHVMKGISTQ 145 (391)
Q Consensus 119 G~k~lad~ih~~Glk~Giy~~pg~~~~ 145 (391)
....++++||++|||+|+=+-||++-.
T Consensus 100 ~~~~lv~~ir~~Gmk~G~alkPgT~Ve 126 (224)
T KOG3111|consen 100 KPAELVEKIREKGMKVGLALKPGTPVE 126 (224)
T ss_pred CHHHHHHHHHHcCCeeeEEeCCCCcHH
Confidence 468999999999999999999988643
No 82
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=56.81 E-value=1.5e+02 Score=26.57 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhCCcEEeecCCCCCCCC---hHHHHHHHHHHHhccCC-cEEEEeCC
Q 041825 198 GKAFLRSLHKQYADWGVDFVKHDCAFGDDLD---EGEIAVVSEVFKGQQNR-PIIYSLSP 253 (391)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~---~~~~~~~~~Al~~~~gr-~i~ls~~~ 253 (391)
.+++.+++++.+.++|+|.|-+|+-+....+ .+.+..+-+.|++..++ ..++++..
T Consensus 89 ~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ls~a~ 148 (210)
T cd00598 89 RAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANYLLTIAV 148 (210)
T ss_pred HHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCcEEEEEe
Confidence 3557788888889999999999997654333 45666655555553444 46676654
No 83
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=56.45 E-value=1.2e+02 Score=28.60 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhhCCcEEeecCCCCCC-------CChHHHHHHHHHHHhccCC-cEEEEeC
Q 041825 197 AGKAFLRSLHKQYADWGVDFVKHDCAFGDD-------LDEGEIAVVSEVFKGQQNR-PIIYSLS 252 (391)
Q Consensus 197 ~~~~~~~~~~~~~a~wGvdylK~D~~~~~~-------~~~~~~~~~~~Al~~~~gr-~i~ls~~ 252 (391)
..++|.+++++.+.++|+|-|=+|+-+... .+.+.+..+-+.|++..+. ..++++.
T Consensus 88 ~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~~kllt~~ 151 (255)
T cd06542 88 AAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGPTDKLLTID 151 (255)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 456788999899999999999999854321 1345676666666654653 4555554
No 84
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=55.64 E-value=25 Score=33.95 Aligned_cols=55 Identities=18% Similarity=0.391 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhCCcEEeecCCCC-----CC--CChHHHHHHHHHHHhccCCcEEEEeCC
Q 041825 198 GKAFLRSLHKQYADWGVDFVKHDCAFG-----DD--LDEGEIAVVSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~--~~~~~~~~~~~Al~~~~gr~i~ls~~~ 253 (391)
-++|..++++++.+||||-|-+|--.+ +. .-+...+++++--+. .|..+++.+-|
T Consensus 119 E~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~-~Gk~f~itMAP 180 (332)
T COG3469 119 EQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKN-QGKNFFITMAP 180 (332)
T ss_pred HHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHh-cCCceEEEecC
Confidence 467889999999999999999996322 11 123344555555566 89999999875
No 85
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=55.55 E-value=28 Score=28.85 Aligned_cols=20 Identities=25% Similarity=0.163 Sum_probs=16.4
Q ss_pred CchhHHHHHHHHHHHhhccc
Q 041825 1 MKFFALSILCFFSSLLLHRI 20 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (391)
||++..++++++++.|+...
T Consensus 5 mk~~~~l~~~l~LS~~s~~~ 24 (104)
T PRK14864 5 MRRFASLLLTLLLSACSALQ 24 (104)
T ss_pred HHHHHHHHHHHHHhhhhhcc
Confidence 78888889999998886655
No 86
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=54.19 E-value=1.6e+02 Score=27.73 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=34.0
Q ss_pred HHHH-HHHHHHHHHHHhhCCcEEeecCCCCCCCChHHHHH----HHHHHHhccCCcEEEEeC
Q 041825 196 GAGK-AFLRSLHKQYADWGVDFVKHDCAFGDDLDEGEIAV----VSEVFKGQQNRPIIYSLS 252 (391)
Q Consensus 196 p~~~-~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~~~~----~~~Al~~~~gr~i~ls~~ 252 (391)
|+.+ .+++++++.+.++|+|.|-+|+-+.... .+.|.. +++++++ .|. .++++
T Consensus 81 ~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~-~~~--~lt~a 138 (253)
T cd06545 81 PAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT-FGDYLVFIRALYAALKK-EGK--LLTAA 138 (253)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc-HhHHHHHHHHHHHHHhh-cCc--EEEEE
Confidence 4444 4778888999999999999998654222 345544 5555555 443 44443
No 87
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=53.66 E-value=45 Score=32.77 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhhCCcEEeecCCCCCCC-----ChHHHHHHHHHHHhccCCcEEEEeCC
Q 041825 197 AGKAFLRSLHKQYADWGVDFVKHDCAFGDDL-----DEGEIAVVSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 197 ~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~-----~~~~~~~~~~Al~~~~gr~i~ls~~~ 253 (391)
..+++.+++.+.+.++|+|-|=+|+-++... +.+.+..+-+.|++..+..+++++.|
T Consensus 94 ~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~~~~lT~AP 155 (312)
T cd02871 94 QEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGPNFILTMAP 155 (312)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 3566788888889999999999998654221 22445555555555467778888765
No 88
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=53.50 E-value=1.1e+02 Score=29.51 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHc
Q 041825 51 SEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDI 130 (391)
Q Consensus 51 ~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~ 130 (391)
||+.+++.|+. ++++|..+| +.|.+. -..+|..|-.. |..|++.|.++.++.
T Consensus 27 s~e~~~~~a~~----~~~~g~~~~----------r~g~~k-------------pRts~~sf~G~-G~~gl~~L~~~~~~~ 78 (250)
T PRK13397 27 SYDHIRLAASS----AKKLGYNYF----------RGGAYK-------------PRTSAASFQGL-GLQGIRYLHEVCQEF 78 (250)
T ss_pred CHHHHHHHHHH----HHHcCCCEE----------EecccC-------------CCCCCcccCCC-CHHHHHHHHHHHHHc
Confidence 78888888875 677787766 112111 11223344321 224899999999999
Q ss_pred CCeE
Q 041825 131 GLKF 134 (391)
Q Consensus 131 Glk~ 134 (391)
|+.+
T Consensus 79 Gl~~ 82 (250)
T PRK13397 79 GLLS 82 (250)
T ss_pred CCCE
Confidence 9985
No 89
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=53.30 E-value=98 Score=30.15 Aligned_cols=55 Identities=11% Similarity=0.144 Sum_probs=36.7
Q ss_pred HhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEee
Q 041825 64 KRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVM 139 (391)
Q Consensus 64 ~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~ 139 (391)
+.+.++|.+.|.|+|-|....- ...-....--.|. ++.+++.+|+.|.+.++|+.
T Consensus 175 ~~~~~~G~d~i~i~d~~~~~~~---------------isp~~f~e~~~p~------~k~i~~~i~~~g~~~~lH~c 229 (330)
T cd03465 175 DALIEAGADGIYISDPWASSSI---------------LSPEDFKEFSLPY------LKKVFDAIKALGGPVIHHNC 229 (330)
T ss_pred HHHHHhCCCEEEEeCCccccCC---------------CCHHHHHHHhhHH------HHHHHHHHHHcCCceEEEEC
Confidence 3466779999999998854210 0000011111364 89999999999999999986
No 90
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=52.87 E-value=30 Score=31.02 Aligned_cols=74 Identities=11% Similarity=0.103 Sum_probs=42.0
Q ss_pred cccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHH
Q 041825 47 CWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKK 126 (391)
Q Consensus 47 ~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ 126 (391)
..+.++++..+..+. |++.|.++|+|= |..-.. . .-+..-. .+.+|.. ...+=+..+.+.
T Consensus 14 ~~~~~~~~W~~~~~~----m~~~GidtlIlq--~~~~~~-~-----------~~yps~~-~~~~~~~-~~~d~l~~~L~~ 73 (166)
T PF14488_consen 14 HQNWTPAQWREEFRA----MKAIGIDTLILQ--WTGYGG-F-----------AFYPSKL-SPGGFYM-PPVDLLEMILDA 73 (166)
T ss_pred hcCCCHHHHHHHHHH----HHHcCCcEEEEE--EeecCC-c-----------ccCCccc-cCccccC-CcccHHHHHHHH
Confidence 457788888887764 667888888763 433210 0 0011100 1112221 001137888899
Q ss_pred HHHcCCeE--EEEeec
Q 041825 127 VHDIGLKF--GIHVMK 140 (391)
Q Consensus 127 ih~~Glk~--Giy~~p 140 (391)
..+.|||+ |||..+
T Consensus 74 A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 74 ADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHcCCEEEEeCCCCc
Confidence 99999994 887654
No 91
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=52.03 E-value=15 Score=33.43 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHcCCeEEEEeecCc
Q 041825 119 GFTEIAKKVHDIGLKFGIHVMKGI 142 (391)
Q Consensus 119 G~k~lad~ih~~Glk~Giy~~pg~ 142 (391)
-++.++++|++.|.+++||+.+..
T Consensus 114 ~~~~f~~~v~~~G~~~~iY~~~~~ 137 (191)
T cd06414 114 IANAFCETIEAAGYYPGIYANLSW 137 (191)
T ss_pred HHHHHHHHHHHcCCCeEEEecHHH
Confidence 478999999999999999997643
No 92
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=52.02 E-value=31 Score=34.68 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEe-cccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHH
Q 041825 50 ISEQEFLESADIVAKRLLPHGYEYVVV-DYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVH 128 (391)
Q Consensus 50 i~e~~v~~~ad~~~~~l~~~Gy~~v~I-DdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih 128 (391)
.+++.+.+.++. ++++|+++|-| .-.|..-.+ +-|.+ .|. -+..+++.++
T Consensus 7 ~~~e~~~~d~~~----m~~~G~n~vri~~~~W~~lEP--------------~eG~y-----dF~------~lD~~l~~a~ 57 (374)
T PF02449_consen 7 WPEEEWEEDLRL----MKEAGFNTVRIGEFSWSWLEP--------------EEGQY-----DFS------WLDRVLDLAA 57 (374)
T ss_dssp S-CCHHHHHHHH----HHHHT-SEEEE-CCEHHHH-S--------------BTTB--------H------HHHHHHHHHH
T ss_pred CCHHHHHHHHHH----HHHcCCCEEEEEEechhhccC--------------CCCee-----ecH------HHHHHHHHHH
Confidence 455667776664 56789999997 557865332 11333 244 5999999999
Q ss_pred HcCCeEEEEee
Q 041825 129 DIGLKFGIHVM 139 (391)
Q Consensus 129 ~~Glk~Giy~~ 139 (391)
+.|+|+=|-+.
T Consensus 58 ~~Gi~viL~~~ 68 (374)
T PF02449_consen 58 KHGIKVILGTP 68 (374)
T ss_dssp CTT-EEEEEEC
T ss_pred hccCeEEEEec
Confidence 99999877664
No 93
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=51.09 E-value=2.2e+02 Score=31.36 Aligned_cols=134 Identities=12% Similarity=0.057 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCC---CCCCCHHHHHHHH
Q 041825 51 SEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSS---KGGKGFTEIAKKV 127 (391)
Q Consensus 51 ~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~---~~~~G~k~lad~i 127 (391)
+-++-.++.+.+=+.+++.|.+.|.+=-. + |..|+=..+..-||.- ....++..++=.|
T Consensus 328 dp~qq~~~L~~lLdrlk~~G~ntV~lqaf-a-----------------dp~gd~~~~s~yfP~~~lp~r~d~f~~~aw~l 389 (671)
T PRK14582 328 NPQQQDRNIDVLIQRVKDMQISTVYLQAF-A-----------------DPDGDGLVKELYFPNRLLPMRADLFNRVAWQL 389 (671)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEEec-c-----------------CCCCCccccccccCccccccccCCcCHHHHHH
Confidence 44444555554445678888877755211 0 2234434444556641 0224788887777
Q ss_pred HH-cCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCceeecCCcHHHHHHHHHHH
Q 041825 128 HD-IGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGAGKAFLRSLH 206 (391)
Q Consensus 128 h~-~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~~~~~~~~~ 206 (391)
+- .|+|+=-|..+=.. ....+.+.. ........+..-.+..+..||+-.|++++++.+++
T Consensus 390 ~~r~~v~v~AWmp~~~~--~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~ 450 (671)
T PRK14582 390 RTRAGVNVYAWMPVLSF--DLDPTLPRV-----------------KRLDTGEGKAQIHPEQYRRLSPFDDRVRAQVGMLY 450 (671)
T ss_pred HHhhCCEEEEeccceee--ccCCCcchh-----------------hhccccCCccccCCCCCcCCCCCCHHHHHHHHHHH
Confidence 64 59997666544210 001111100 00000000111112234569999999999999999
Q ss_pred HHHHh-hCCcEEeecC
Q 041825 207 KQYAD-WGVDFVKHDC 221 (391)
Q Consensus 207 ~~~a~-wGvdylK~D~ 221 (391)
+-++. ..||.|-+|.
T Consensus 451 ~dla~~~~~dGilf~D 466 (671)
T PRK14582 451 EDLAGHAAFDGILFHD 466 (671)
T ss_pred HHHHHhCCCceEEecc
Confidence 88866 6999999974
No 94
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=50.90 E-value=87 Score=31.84 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=50.7
Q ss_pred ccCCHHHHHHHHHHH---HHhhccCCceEEEecc---cccccccC-CcccCCCCccccCCCCCceeCCCCCCCCCCCCCH
Q 041825 48 WIISEQEFLESADIV---AKRLLPHGYEYVVVDY---LWYRKKVK-GAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGF 120 (391)
Q Consensus 48 ~~i~e~~v~~~ad~~---~~~l~~~Gy~~v~IDd---gW~~~~~~-g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~ 120 (391)
...|+++|.+.++.+ ++..+++||+-|.|=. ||--..-- ..+|.+ .|+||--.-|-.||+
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~R-----tDeyGGslenR~rf~-------- 204 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKR-----TDKYGGSLENRLRFA-------- 204 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCC-----CCcCCCCHHHHhHHH--------
Confidence 568999999999854 3567889999999976 77311000 001111 367775444445665
Q ss_pred HHHHHHHHHc---CCeEEEEeec
Q 041825 121 TEIAKKVHDI---GLKFGIHVMK 140 (391)
Q Consensus 121 k~lad~ih~~---Glk~Giy~~p 140 (391)
..+++.|++. ++.+|+=+.+
T Consensus 205 ~eii~~vr~~~g~~f~v~vri~~ 227 (382)
T cd02931 205 IEIVEEIKARCGEDFPVSLRYSV 227 (382)
T ss_pred HHHHHHHHHhcCCCceEEEEEec
Confidence 5677788774 5677776654
No 95
>PRK13840 sucrose phosphorylase; Provisional
Probab=50.83 E-value=19 Score=38.12 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=31.9
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCC
Q 041825 188 FMAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCA 222 (391)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (391)
..-||..||++++++...++.+.+-|||.+.+|..
T Consensus 161 QpDLN~~NP~V~~~i~~il~fwl~~GVDgfRLDAv 195 (495)
T PRK13840 161 QIDIDVHSAAGWEYLMSILDRFAASHVTLIRLDAA 195 (495)
T ss_pred cceeCCCCHHHHHHHHHHHHHHHHCCCCEEEEech
Confidence 45689999999999999999999999999999975
No 96
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=50.50 E-value=48 Score=33.38 Aligned_cols=83 Identities=11% Similarity=-0.002 Sum_probs=48.6
Q ss_pred cHHHHH-HHHHHHHHHHhhCCcEEeecCCCCCC---CChHHHH----HHHHHHHhccCCcEEEEeCC-CCC---CC-hhH
Q 041825 195 LGAGKA-FLRSLHKQYADWGVDFVKHDCAFGDD---LDEGEIA----VVSEVFKGQQNRPIIYSLSP-GTS---AT-PAM 261 (391)
Q Consensus 195 ~p~~~~-~~~~~~~~~a~wGvdylK~D~~~~~~---~~~~~~~----~~~~Al~~~~gr~i~ls~~~-~~~---~~-p~~ 261 (391)
+|+.++ |+++.++.+.++|+|.|-+|+-++.. .+.+.|. .++++|++ .++...++++. +.+ .. ...
T Consensus 93 ~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~-~~~~~~Lsvav~~~p~~~~~~~yd 171 (358)
T cd02875 93 NPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKK-ENPGYQISFDVAWSPSCIDKRCYD 171 (358)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhh-cCCCcEEEEEEecCcccccccccC
Confidence 455554 77999999999999999999976532 2334554 45666666 55455555532 111 00 011
Q ss_pred HHhhhccccEEEecC-CC
Q 041825 262 AQKINGLANMYRVTG-DD 278 (391)
Q Consensus 262 ~~~~~~~an~~Ris~-D~ 278 (391)
.+.+.+++|..-+.+ |-
T Consensus 172 ~~~l~~~vD~v~lMtYD~ 189 (358)
T cd02875 172 YTGIADASDFLVVMDYDE 189 (358)
T ss_pred HHHHHhhCCEeeEEeecc
Confidence 123456677776554 54
No 97
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=48.57 E-value=38 Score=35.43 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHcCCeE
Q 041825 118 KGFTEIAKKVHDIGLKF 134 (391)
Q Consensus 118 ~G~k~lad~ih~~Glk~ 134 (391)
+-+|.|++.+|++|||+
T Consensus 81 ~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 81 EELLNAIDALHENGIKV 97 (479)
T ss_pred HHHHHHHHHHHHCCCEE
Confidence 46999999999999995
No 98
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=47.94 E-value=27 Score=31.79 Aligned_cols=23 Identities=4% Similarity=0.088 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHcCC-eEEEEeecC
Q 041825 119 GFTEIAKKVHDIGL-KFGIHVMKG 141 (391)
Q Consensus 119 G~k~lad~ih~~Gl-k~Giy~~pg 141 (391)
-++++.+.|++.|. +++||+.+-
T Consensus 110 ~~~~F~~~v~~~g~~~~~iY~~~~ 133 (192)
T cd06522 110 NVNAFWQTMKAAGYKNTDVYTSAS 133 (192)
T ss_pred HHHHHHHHHHHcCCCCcEEEccHH
Confidence 47899999999998 899998763
No 99
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=47.67 E-value=91 Score=32.02 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCeEEEEeecC
Q 041825 120 FTEIAKKVHDIGLKFGIHVMKG 141 (391)
Q Consensus 120 ~k~lad~ih~~Glk~Giy~~pg 141 (391)
++.++..+++.||+||||....
T Consensus 103 vgela~Avr~qGL~FGvy~s~a 124 (430)
T COG3669 103 VGELAKAVREQGLRFGVYLSGA 124 (430)
T ss_pred HHHHHHHHHHcCCeeeEeeccC
Confidence 7899999999999999999844
No 100
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=47.47 E-value=49 Score=32.29 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=36.8
Q ss_pred cHHHH-HHHHHHHHHHHhhCCcEEeecCCCCCCCChHHHHH----HHHHHHhccCCcEEEEeCC
Q 041825 195 LGAGK-AFLRSLHKQYADWGVDFVKHDCAFGDDLDEGEIAV----VSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 195 ~p~~~-~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~~~~----~~~Al~~~~gr~i~ls~~~ 253 (391)
+|..+ .+++++++.+.++|+|.|-+|+-+....+.+.|.. ++.+|++ .|..+.+.+.+
T Consensus 84 ~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~~-~~~~lsv~~~p 146 (313)
T cd02874 84 NPEARQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLHP-AGYTLSTAVVP 146 (313)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhhh-cCcEEEEEecC
Confidence 35544 47889999999999999999996543334445654 4555554 45433333333
No 101
>smart00642 Aamy Alpha-amylase domain.
Probab=46.75 E-value=44 Score=29.75 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHcCCeEE
Q 041825 118 KGFTEIAKKVHDIGLKFG 135 (391)
Q Consensus 118 ~G~k~lad~ih~~Glk~G 135 (391)
+.++.|++.+|++|+|+=
T Consensus 70 ~d~~~lv~~~h~~Gi~vi 87 (166)
T smart00642 70 EDFKELVDAAHARGIKVI 87 (166)
T ss_pred HHHHHHHHHHHHCCCEEE
Confidence 479999999999999963
No 102
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=46.33 E-value=61 Score=30.90 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHcCCeE
Q 041825 119 GFTEIAKKVHDIGLKF 134 (391)
Q Consensus 119 G~k~lad~ih~~Glk~ 134 (391)
-.+.|.++++++|+.|
T Consensus 57 ~~~~L~~~~~~~gi~f 72 (241)
T PF03102_consen 57 QHKELFEYCKELGIDF 72 (241)
T ss_dssp HHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHcCCEE
Confidence 5899999999999997
No 103
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=45.54 E-value=67 Score=31.30 Aligned_cols=79 Identities=9% Similarity=0.045 Sum_probs=46.4
Q ss_pred cHHHHH-HHHHHHHHHHhhCCcEEeecCCCCCCCChHHHHH----HHHHHHhccCCcEEEEeCCCCCCChhHHHhhhccc
Q 041825 195 LGAGKA-FLRSLHKQYADWGVDFVKHDCAFGDDLDEGEIAV----VSEVFKGQQNRPIIYSLSPGTSATPAMAQKINGLA 269 (391)
Q Consensus 195 ~p~~~~-~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~~~~----~~~Al~~~~gr~i~ls~~~~~~~~p~~~~~~~~~a 269 (391)
+|..++ +++++++.+.+.|+|.|-+|+-+....+.+.|.. ++.+|++ .|..+.+.+.+... ...+ +.+..++
T Consensus 85 ~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~-~~~~lsv~v~~~~~-~~d~-~~l~~~~ 161 (298)
T cd06549 85 DPSARAKFIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPA-QGKQLTVTVPADEA-DWNL-KALARNA 161 (298)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhh-cCcEEEEEecCCCC-CCCH-HHHHHhC
Confidence 355544 7899999999999999999996543334455654 4555555 45444444433221 1112 2344566
Q ss_pred cEEEecC
Q 041825 270 NMYRVTG 276 (391)
Q Consensus 270 n~~Ris~ 276 (391)
|..-+.+
T Consensus 162 D~v~lMt 168 (298)
T cd06549 162 DKLILMA 168 (298)
T ss_pred CEEEEEE
Confidence 7665543
No 104
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=45.49 E-value=99 Score=30.49 Aligned_cols=52 Identities=13% Similarity=0.276 Sum_probs=35.2
Q ss_pred HhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCC-CC--CCCCCCCCCHHHHHHHHHHcCCeEEEEee
Q 041825 64 KRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDP-ER--WPSSKGGKGFTEIAKKVHDIGLKFGIHVM 139 (391)
Q Consensus 64 ~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~-~k--FP~~~~~~G~k~lad~ih~~Glk~Giy~~ 139 (391)
+.+.++|.+.|+|+|.|.... -+.|.. .+ .|. ++.+.+.||+.|-.++||+.
T Consensus 187 ~~~~~~Gad~I~i~dp~a~~~------------------~lsp~~f~e~~~p~------~k~i~~~i~~~g~~~ilH~C 241 (340)
T TIGR01463 187 KAMVEAGADVIAIADPFASSD------------------LISPETYKEFGLPY------QKRLFAYIKEIGGITVLHIC 241 (340)
T ss_pred HHHHHcCCCEEEecCCccCcc------------------ccCHHHHHHHHHHH------HHHHHHHHHhcCCceEEEEC
Confidence 456789999999999885421 111110 11 254 89999999999888788763
No 105
>PRK06852 aldolase; Validated
Probab=44.01 E-value=1.5e+02 Score=29.41 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhCCcEEeecCCCCCC-CChHHHHHHHHHHHhcc-CCcEEEEe
Q 041825 201 FLRSLHKQYADWGVDFVKHDCAFGDD-LDEGEIAVVSEVFKGQQ-NRPIIYSL 251 (391)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~~~~~~-~~~~~~~~~~~Al~~~~-gr~i~ls~ 251 (391)
++...++.-++.|-|+||..++.... -++ ..+++++.. + ..|++++-
T Consensus 189 ~ia~aaRiaaELGADIVKv~y~~~~~~g~~---e~f~~vv~~-~g~vpVviaG 237 (304)
T PRK06852 189 LIAGAAGVAACLGADFVKVNYPKKEGANPA---ELFKEAVLA-AGRTKVVCAG 237 (304)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCcCCCCCH---HHHHHHHHh-CCCCcEEEeC
Confidence 45555677799999999999974211 123 345556666 7 45677653
No 106
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=43.97 E-value=28 Score=36.57 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=31.9
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCC
Q 041825 188 FMAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCA 222 (391)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (391)
..-||+.+|.+++++...++.+.+-|||.+.+|.+
T Consensus 157 QpDLN~~np~v~e~i~~il~fwl~~GvdgfRLDAv 191 (470)
T TIGR03852 157 QIDLDVTSETTKRFIRDNLENLAEHGASIIRLDAF 191 (470)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 45689999999999999999999999999999976
No 107
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=43.91 E-value=3.2e+02 Score=27.23 Aligned_cols=30 Identities=23% Similarity=0.213 Sum_probs=24.6
Q ss_pred ccCCHHHHHHHHHHH---HHhhccCCceEEEec
Q 041825 48 WIISEQEFLESADIV---AKRLLPHGYEYVVVD 77 (391)
Q Consensus 48 ~~i~e~~v~~~ad~~---~~~l~~~Gy~~v~ID 77 (391)
...|+++|.+..+.+ ++..+++||+.|.|=
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih 157 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREAGYDGVEIM 157 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 468999999999854 246788999999993
No 108
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=43.48 E-value=45 Score=32.53 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhCCcEEeecCCCCCC-CChHHHH----HHHHHHHh---ccC-CcEEEEeCC
Q 041825 198 GKAFLRSLHKQYADWGVDFVKHDCAFGDD-LDEGEIA----VVSEVFKG---QQN-RPIIYSLSP 253 (391)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~D~~~~~~-~~~~~~~----~~~~Al~~---~~g-r~i~ls~~~ 253 (391)
.+.|++++++.+.++|||.|-+|+-++.. .+.+.|. .+++++++ ..| ..+++++..
T Consensus 93 R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~~~~~~~~~ls~av 157 (299)
T cd02879 93 RKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEARSSGRPPLLLTAAV 157 (299)
T ss_pred HHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhhccCCCcEEEEeec
Confidence 34577899999999999999999977532 2344554 45555542 023 356776653
No 109
>PRK06769 hypothetical protein; Validated
Probab=43.32 E-value=43 Score=29.79 Aligned_cols=21 Identities=10% Similarity=-0.156 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHcCCeEEEEee
Q 041825 119 GFTEIAKKVHDIGLKFGIHVM 139 (391)
Q Consensus 119 G~k~lad~ih~~Glk~Giy~~ 139 (391)
|++.+.++||++|++++|=+.
T Consensus 32 gv~e~L~~Lk~~G~~l~I~Tn 52 (173)
T PRK06769 32 FTKASLQKLKANHIKIFSFTN 52 (173)
T ss_pred CHHHHHHHHHHCCCEEEEEEC
Confidence 799999999999999999764
No 110
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=42.82 E-value=30 Score=26.23 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=21.8
Q ss_pred CchhHHHHHHHHHHHhhcccccccccc
Q 041825 1 MKFFALSILCFFSSLLLHRIPSANAAD 27 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (391)
|.-|+|+|+-.|+++++..+++.....
T Consensus 1 mnn~Si~VLlaLvLIg~fAVqSdag~~ 27 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAVQSDAGYY 27 (71)
T ss_pred CCchhHHHHHHHHHHhhheeeecCccc
Confidence 777889999899999988888866543
No 111
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=42.05 E-value=64 Score=31.10 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=35.2
Q ss_pred HhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCC---C--CCCCCCCCCHHHHHHHHHHcCCeEEEEe
Q 041825 64 KRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPE---R--WPSSKGGKGFTEIAKKVHDIGLKFGIHV 138 (391)
Q Consensus 64 ~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~---k--FP~~~~~~G~k~lad~ih~~Glk~Giy~ 138 (391)
+.+.++|.+.|+|||-|.... . ...+++ + .|. ++.+++.+|..|.+.++|+
T Consensus 151 ~~~~eaG~d~i~i~dp~~~~~-----------------~-~~is~~~~~e~~~p~------~k~i~~~i~~~~~~~~lH~ 206 (306)
T cd00465 151 KTLIEAGAKALQIHEPAFSQI-----------------N-SFLGPKMFKKFALPA------YKKVAEYKAAGEVPIVHHS 206 (306)
T ss_pred HHHHHhCCCEEEEeccccccc-----------------C-CCCCHHHHHHHHHHH------HHHHHHHHhhcCCceEEEE
Confidence 457788999999999887531 0 001111 2 244 8999999998888888876
No 112
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=41.30 E-value=61 Score=30.57 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCCeEEEEeec
Q 041825 120 FTEIAKKVHDIGLKFGIHVMK 140 (391)
Q Consensus 120 ~k~lad~ih~~Glk~Giy~~p 140 (391)
|+.+++.+|++|+++-+|..|
T Consensus 187 l~~~v~~a~~~Gl~vr~Wtv~ 207 (228)
T cd08577 187 LKSIIDKAHARGKKVRFWGTP 207 (228)
T ss_pred HHHHHHHHHHCCCEEEEEccC
Confidence 688889999999999999754
No 113
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=40.81 E-value=1.3e+02 Score=30.14 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHH---HHhhccCCceEEEecccc--------cccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCC
Q 041825 50 ISEQEFLESADIV---AKRLLPHGYEYVVVDYLW--------YRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGK 118 (391)
Q Consensus 50 i~e~~v~~~ad~~---~~~l~~~Gy~~v~IDdgW--------~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~ 118 (391)
+|+++|.+.++.+ +..++++||+-|.|=.+- ....+.. .|+||-=.-|-.||+
T Consensus 132 mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R----------tD~yGGslenR~Rf~------ 195 (337)
T PRK13523 132 MTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKR----------TDEYGGSPENRYRFL------ 195 (337)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCc----------CCCCCCCHHHHHHHH------
Q ss_pred CHHHHHHHHHHc-CCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCceeecCCcHH
Q 041825 119 GFTEIAKKVHDI-GLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMAVNTKLGA 197 (391)
Q Consensus 119 G~k~lad~ih~~-Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~ 197 (391)
..+++.|++. .+.+|+=+.+ ..+...|.
T Consensus 196 --~eii~~ir~~~~~~v~vRis~-------------------~d~~~~G~------------------------------ 224 (337)
T PRK13523 196 --REIIDAVKEVWDGPLFVRISA-------------------SDYHPGGL------------------------------ 224 (337)
T ss_pred --HHHHHHHHHhcCCCeEEEecc-------------------cccCCCCC------------------------------
Q ss_pred HHHHHHHHHHHHHhhCCcEEee
Q 041825 198 GKAFLRSLHKQYADWGVDFVKH 219 (391)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~ 219 (391)
..+=...+++.+.+.|+|||-+
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~v 246 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDV 246 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEe
No 114
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=40.33 E-value=41 Score=31.13 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHcCCeEEEEeecCcchhh
Q 041825 119 GFTEIAKKVHDIGLKFGIHVMKGISTQA 146 (391)
Q Consensus 119 G~k~lad~ih~~Glk~Giy~~pg~~~~a 146 (391)
.+..+.++||++|+|+||-+.|+++...
T Consensus 93 ~~~~~i~~ik~~g~k~GialnP~T~~~~ 120 (201)
T PF00834_consen 93 DPKETIKYIKEAGIKAGIALNPETPVEE 120 (201)
T ss_dssp THHHHHHHHHHTTSEEEEEE-TTS-GGG
T ss_pred CHHHHHHHHHHhCCCEEEEEECCCCchH
Confidence 4889999999999999999999876543
No 115
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=40.08 E-value=27 Score=31.69 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHcCCeEEEEeecC
Q 041825 119 GFTEIAKKVHDIGLKFGIHVMKG 141 (391)
Q Consensus 119 G~k~lad~ih~~Glk~Giy~~pg 141 (391)
-++.+++.+++.|.++|||+.+.
T Consensus 111 ~~~~f~~~~~~~G~~~~iYt~~~ 133 (196)
T cd06416 111 FLQELVSAAKALGLKVGIYSSQY 133 (196)
T ss_pred HHHHHHHHHHHhCCeEEEEcCcc
Confidence 47889999999999999999764
No 116
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=40.05 E-value=67 Score=36.17 Aligned_cols=49 Identities=20% Similarity=0.045 Sum_probs=35.9
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHhhC-CcEEeecCCCCCCCChHHH-HHHHH
Q 041825 188 FMAVNTKLGAGKAFLRSLHKQYADWG-VDFVKHDCAFGDDLDEGEI-AVVSE 237 (391)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~wG-vdylK~D~~~~~~~~~~~~-~~~~~ 237 (391)
...|...+|++.+....++..+.+-| ||.+.+|...+ -.++..| +.+++
T Consensus 221 L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGlRIDh~dG-L~dP~~Yl~rLr~ 271 (825)
T TIGR02401 221 LAGVRVEDPAVFDATHRLVLELVAEGLVDGLRIDHIDG-LADPEGYLRRLRE 271 (825)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHcCCCceEEeccccc-cCChHHHHHHHHH
Confidence 46688899999999887777776666 99999998643 2456666 34543
No 117
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=39.09 E-value=70 Score=36.24 Aligned_cols=77 Identities=13% Similarity=0.169 Sum_probs=45.4
Q ss_pred ccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHH
Q 041825 46 FCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAK 125 (391)
Q Consensus 46 ~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad 125 (391)
|....+-+.+.+.+++ |+++|++.|.|=--+... .|.+ -.+|....-.+|+ +| ++..+++.|++
T Consensus 13 ~~~~~tf~~~~~~l~Y----L~~LGis~IyLsPi~~a~--~gs~------hGYdv~D~~~idp-~l---Gt~e~f~~Lv~ 76 (879)
T PRK14511 13 FHAGFTFDDAAELVPY----FADLGVSHLYLSPILAAR--PGST------HGYDVVDHTRINP-EL---GGEEGLRRLAA 76 (879)
T ss_pred eCCCCCHHHHHHHhHH----HHHcCCCEEEECcCccCC--CCCC------CCCCcCCCCCcCC-CC---CCHHHHHHHHH
Confidence 4556777788888875 677999998765443321 0100 0012222223332 22 22358999999
Q ss_pred HHHHcCCeEEEEe
Q 041825 126 KVHDIGLKFGIHV 138 (391)
Q Consensus 126 ~ih~~Glk~Giy~ 138 (391)
.+|++||++=+=+
T Consensus 77 aah~~Gi~VIlDi 89 (879)
T PRK14511 77 ALRAHGMGLILDI 89 (879)
T ss_pred HHHHCCCEEEEEe
Confidence 9999999964433
No 118
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=38.48 E-value=65 Score=27.18 Aligned_cols=51 Identities=25% Similarity=0.411 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHc
Q 041825 51 SEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDI 130 (391)
Q Consensus 51 ~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~ 130 (391)
|-+........+++.+++.|.+-|++|-| | .+|-+ -++++++.+++.
T Consensus 64 n~~aA~~vG~~la~ra~~~gi~~vvfDrg-------g---------------------~~YhG-----rv~A~a~~aRe~ 110 (114)
T TIGR00060 64 NKDAAKKVGKLVAERLKEKGIKDVVFDRG-------G---------------------YKYHG-----RVAALAEAAREA 110 (114)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCC-------C---------------------CcchH-----HHHHHHHHHHHh
Confidence 33444555566778889999999999832 1 12322 499999999999
Q ss_pred CCeE
Q 041825 131 GLKF 134 (391)
Q Consensus 131 Glk~ 134 (391)
||+|
T Consensus 111 Gl~F 114 (114)
T TIGR00060 111 GLNF 114 (114)
T ss_pred CCCC
Confidence 9987
No 119
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=38.33 E-value=1.4e+02 Score=29.49 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=26.0
Q ss_pred ccCCHHHHHHHHHHH---HHhhccCCceEEEeccc
Q 041825 48 WIISEQEFLESADIV---AKRLLPHGYEYVVVDYL 79 (391)
Q Consensus 48 ~~i~e~~v~~~ad~~---~~~l~~~Gy~~v~IDdg 79 (391)
..+|+++|.+..+.+ ++.++++||+-|.|-.+
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~ 176 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAA 176 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 568999999999854 35678899999999764
No 120
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=38.32 E-value=79 Score=30.24 Aligned_cols=62 Identities=6% Similarity=0.095 Sum_probs=39.8
Q ss_pred eecCCcHHHHHHHHHHHHHHHhhCCcEEeecCCCC--CCC----ChHHHHHHHHHHHhccC-CcEEEEeC
Q 041825 190 AVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCAFG--DDL----DEGEIAVVSEVFKGQQN-RPIIYSLS 252 (391)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~--~~~----~~~~~~~~~~Al~~~~g-r~i~ls~~ 252 (391)
+||.|||=+.+--++..+.-.+-|+.|+.+.=-.. ... ..+.+....+.+.+ .+ ..|++.+-
T Consensus 70 vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~-~~~~~iflttG 138 (249)
T PF02571_consen 70 VIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKE-LGGGRIFLTTG 138 (249)
T ss_pred EEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhh-cCCCCEEEeCc
Confidence 68999998877666655666789999999863211 111 12345555555555 55 77777654
No 121
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.52 E-value=1.5e+02 Score=29.69 Aligned_cols=75 Identities=19% Similarity=0.354 Sum_probs=46.9
Q ss_pred cccCCHHHHHHHHHHH---HHhhccCCceEEEecccc--------cccccCCcccCCCCccccCCCCCceeCCCCCCCCC
Q 041825 47 CWIISEQEFLESADIV---AKRLLPHGYEYVVVDYLW--------YRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSK 115 (391)
Q Consensus 47 ~~~i~e~~v~~~ad~~---~~~l~~~Gy~~v~IDdgW--------~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~ 115 (391)
-...|+++|.+.++.+ +...+.+||+-|.|=.+- .... |.+ .|+||--.-|-.||+
T Consensus 131 p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~-----N~R-----~D~yGGslenR~r~~--- 197 (353)
T cd04735 131 PRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHS-----NRR-----TDEWGGSLENRMRFP--- 197 (353)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCcc-----CCC-----CcccCCcHHHHHHHH---
Confidence 3578999999999854 356788999999997542 2111 111 366764333555665
Q ss_pred CCCCHHHHHHHHHHc-------CCeEEEEee
Q 041825 116 GGKGFTEIAKKVHDI-------GLKFGIHVM 139 (391)
Q Consensus 116 ~~~G~k~lad~ih~~-------Glk~Giy~~ 139 (391)
..+++.|++. .+.+|+-+.
T Consensus 198 -----~eii~~vr~~vg~~~~~~~~v~~R~s 223 (353)
T cd04735 198 -----LAVVKAVQEVIDKHADKDFILGYRFS 223 (353)
T ss_pred -----HHHHHHHHHHhccccCCCceEEEEEC
Confidence 4667777763 455555553
No 122
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=37.30 E-value=41 Score=32.80 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhhCCcEEeecCCCCCCC----ChHHHHHH----HHHHHhccC---CcEEEEeC
Q 041825 198 GKAFLRSLHKQYADWGVDFVKHDCAFGDDL----DEGEIAVV----SEVFKGQQN---RPIIYSLS 252 (391)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~D~~~~~~~----~~~~~~~~----~~Al~~~~g---r~i~ls~~ 252 (391)
.+.+.+++++.+.++|+|.|-+|+-+.... +.+.|..+ +.+|++ .+ +.+++++.
T Consensus 100 r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~-~~~~~~~~~ls~a 164 (343)
T PF00704_consen 100 RQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKR-ANRSGKGYILSVA 164 (343)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHH-HHHHHSTSEEEEE
T ss_pred HHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhcc-cccccceeEEeec
Confidence 356788888999999999999999765433 34556544 444444 21 26777775
No 123
>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]
Probab=36.95 E-value=31 Score=34.05 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=8.8
Q ss_pred HHHHhhccCCceE
Q 041825 61 IVAKRLLPHGYEY 73 (391)
Q Consensus 61 ~~~~~l~~~Gy~~ 73 (391)
.++..|+.+||+.
T Consensus 49 v~~~iLk~~Gy~v 61 (302)
T COG2113 49 VAKKILKGLGYTV 61 (302)
T ss_pred HHHHHHHhCCCcc
Confidence 3445578899875
No 124
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=36.14 E-value=3.3e+02 Score=24.57 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCeEEEEe
Q 041825 120 FTEIAKKVHDIGLKFGIHV 138 (391)
Q Consensus 120 ~k~lad~ih~~Glk~Giy~ 138 (391)
++.=.+..++.||++|.|.
T Consensus 44 ~~~n~~~A~~aGl~vG~Yh 62 (192)
T cd06522 44 AASQIANAKAAGLKVSAYH 62 (192)
T ss_pred HHHHHHHHHHCCCeeEEEE
Confidence 6667788999999999997
No 125
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=36.12 E-value=1.1e+02 Score=30.58 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHcCCeE
Q 041825 118 KGFTEIAKKVHDIGLKF 134 (391)
Q Consensus 118 ~G~k~lad~ih~~Glk~ 134 (391)
.+++.|.+++++.|+.|
T Consensus 76 e~~~~L~~~~~~~Gi~~ 92 (329)
T TIGR03569 76 EDHRELKEYCESKGIEF 92 (329)
T ss_pred HHHHHHHHHHHHhCCcE
Confidence 47999999999999986
No 126
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=36.07 E-value=69 Score=30.48 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=26.9
Q ss_pred HHHHHhhCCcEEeecCCCCCCCCh----H-HHHHHHHHHHhccCCcEEEEeC
Q 041825 206 HKQYADWGVDFVKHDCAFGDDLDE----G-EIAVVSEVFKGQQNRPIIYSLS 252 (391)
Q Consensus 206 ~~~~a~wGvdylK~D~~~~~~~~~----~-~~~~~~~Al~~~~gr~i~ls~~ 252 (391)
+..+++.-||+||+|-.+-..... . -.+.+-...++ .|-.++..-.
T Consensus 164 l~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~-l~~~vvaEGV 214 (256)
T COG2200 164 LSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHK-LGLTVVAEGV 214 (256)
T ss_pred HHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHH-CCCEEEEeec
Confidence 467889999999999543222211 1 23344444455 6666666543
No 127
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=35.76 E-value=74 Score=31.75 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=37.8
Q ss_pred HHHH-HHHHHHHHHHHhhCCcEEeecCCCCCC-----------CChHHHHHHHHHHHhccCCcEEEEeC
Q 041825 196 GAGK-AFLRSLHKQYADWGVDFVKHDCAFGDD-----------LDEGEIAVVSEVFKGQQNRPIIYSLS 252 (391)
Q Consensus 196 p~~~-~~~~~~~~~~a~wGvdylK~D~~~~~~-----------~~~~~~~~~~~Al~~~~gr~i~ls~~ 252 (391)
|+.+ .|++++++.+.++|||-|-+|+-++.. .+.+.|..+-+.|+++.+....+++.
T Consensus 89 ~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~~~~ls~a 157 (345)
T cd02878 89 PANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPSGKSLSIA 157 (345)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 4444 477899899999999999999976521 13345766656665545444455554
No 128
>PRK07534 methionine synthase I; Validated
Probab=34.96 E-value=1.2e+02 Score=30.29 Aligned_cols=56 Identities=14% Similarity=0.029 Sum_probs=43.9
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCcEEeecCCCCCCCChHHHHHHHHHHHhccCCcEEEEeCC
Q 041825 193 TKLGAGKAFLRSLHKQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 193 ~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~~~gr~i~ls~~~ 253 (391)
.+..+.+++|...++.|.+=|||+|=+.-+ .+.++.+++.+++++ .+.|++++++-
T Consensus 124 ~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~----p~l~E~~a~~~~~~~-~~~Pv~vSft~ 179 (336)
T PRK07534 124 LTHALAVEAFHEQAEGLKAGGADVLWVETI----SAPEEIRAAAEAAKL-AGMPWCGTMSF 179 (336)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecc----CCHHHHHHHHHHHHH-cCCeEEEEEEE
Confidence 344567778888888999999999988754 346788888888988 89999988763
No 129
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=34.48 E-value=81 Score=31.00 Aligned_cols=55 Identities=15% Similarity=0.257 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhCCcEEeecCCCCCC----------CChHHHH----HHHHHHHhc---cCCcEEEEeCC
Q 041825 199 KAFLRSLHKQYADWGVDFVKHDCAFGDD----------LDEGEIA----VVSEVFKGQ---QNRPIIYSLSP 253 (391)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~----------~~~~~~~----~~~~Al~~~---~gr~i~ls~~~ 253 (391)
+.|++++++.+.++|+|.|-+|+-++.. .+.+.|. .++.+|.+. .+++.++++..
T Consensus 111 ~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~~~Ls~av 182 (322)
T cd06548 111 AKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLKELREALDALGAETGRKYLLTIAA 182 (322)
T ss_pred HHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhccCCceEEEEEc
Confidence 4578999999999999999999876532 2234454 456666551 24677777764
No 130
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=34.18 E-value=82 Score=30.29 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=14.2
Q ss_pred HHHHHhhCCcEEeecCC
Q 041825 206 HKQYADWGVDFVKHDCA 222 (391)
Q Consensus 206 ~~~~a~wGvdylK~D~~ 222 (391)
++.+.++|||.|--|.+
T Consensus 274 ~~~l~~~GVdgIiTD~~ 290 (290)
T cd08607 274 RKKLKELGVDGLIYDRI 290 (290)
T ss_pred HHHHHHcCCCEEEecCC
Confidence 56788999999998863
No 131
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=34.09 E-value=81 Score=32.57 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhCCcEEeecC-CCCCCCCh--HHHH----HHHHHHHhccCCcEEEEeCC
Q 041825 202 LRSLHKQYADWGVDFVKHDC-AFGDDLDE--GEIA----VVSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~~~----~~~~Al~~~~gr~i~ls~~~ 253 (391)
+..++..++.=|+|+||=|- +....+.+ ++.. ++++|-++ +|+..+|..+.
T Consensus 162 ~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~e-TG~~~~ya~Ni 219 (412)
T TIGR03326 162 HAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAE-TGERKEYLANI 219 (412)
T ss_pred HHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHH-hCCcceEEEEe
Confidence 45567778899999999995 44444443 4544 45555567 99987776654
No 132
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=33.77 E-value=79 Score=30.35 Aligned_cols=17 Identities=41% Similarity=0.323 Sum_probs=14.3
Q ss_pred HHHHHHhhCCcEEeecC
Q 041825 205 LHKQYADWGVDFVKHDC 221 (391)
Q Consensus 205 ~~~~~a~wGvdylK~D~ 221 (391)
.++.+.+||||.|--|+
T Consensus 265 ~~~~l~~~GVdgIiTD~ 281 (282)
T cd08605 265 AVERQADLGVDGVIVDH 281 (282)
T ss_pred HHHHHHHcCCCEEEeCC
Confidence 35778999999998886
No 133
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=33.37 E-value=80 Score=32.39 Aligned_cols=51 Identities=27% Similarity=0.432 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhCCcEEeecC-CCCCCCCh--HHHHH----HHHHHHhccCCcEEEEeCC
Q 041825 202 LRSLHKQYADWGVDFVKHDC-AFGDDLDE--GEIAV----VSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~~~~----~~~Al~~~~gr~i~ls~~~ 253 (391)
+..++..++.=|+|+||=|- +....+.+ ++..+ +.+|-++ +|+..+|..+.
T Consensus 142 ~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~e-TG~~~~ya~Ni 199 (391)
T cd08209 142 LAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQ-TGRRTLYAVNL 199 (391)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHh-hCCcceEEEEc
Confidence 45566778888999999995 44444543 45544 4455556 99987776654
No 134
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=32.89 E-value=83 Score=31.99 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhCCcEEeecC-CCCCCCCh--HHHH----HHHHHHHhccCCcEEEEeCC
Q 041825 202 LRSLHKQYADWGVDFVKHDC-AFGDDLDE--GEIA----VVSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~~~----~~~~Al~~~~gr~i~ls~~~ 253 (391)
+..++..++.=|+|+||=|- +....+.+ ++.. ++.+|-++ +|+..+|..+.
T Consensus 145 ~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~e-TG~~~~y~~Ni 202 (366)
T cd08148 145 TAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEE-TGEKKLYAVNV 202 (366)
T ss_pred HHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHh-hCCcceEEEEc
Confidence 45666778889999999995 44344443 4544 45555566 99988877664
No 135
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=32.66 E-value=1e+02 Score=30.60 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhCCcEEeecCC-CCCCCCh--HHHHH----HHHHHHhccCCcEEEEeC
Q 041825 202 LRSLHKQYADWGVDFVKHDCA-FGDDLDE--GEIAV----VSEVFKGQQNRPIIYSLS 252 (391)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~~-~~~~~~~--~~~~~----~~~Al~~~~gr~i~ls~~ 252 (391)
+..++..++.=|+|+||=|-. ...++.+ +++.+ +.+|-++ +|++.+|...
T Consensus 32 ~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~e-TG~~~ly~~N 88 (309)
T PF00016_consen 32 LAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAEEE-TGEKKLYAAN 88 (309)
T ss_dssp HHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHHHH-HSS--EEEEE
T ss_pred hhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccccc-cceecceecc
Confidence 455667778889999999953 4444543 45544 5555566 9988776654
No 136
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=32.61 E-value=2.6e+02 Score=27.12 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=29.0
Q ss_pred HHHHHHhhCCcEEeecCCCCCCCChHHHHHHHHHHHhccCCcEEEEeC
Q 041825 205 LHKQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQNRPIIYSLS 252 (391)
Q Consensus 205 ~~~~~a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~~~gr~i~ls~~ 252 (391)
-.+.=++.|-|.||.++.. .-+.++++++. ++-|++.+--
T Consensus 171 aaRlaaelGADIiK~~ytg-------~~e~F~~vv~~-~~vpVviaGG 210 (265)
T COG1830 171 AARLAAELGADIIKTKYTG-------DPESFRRVVAA-CGVPVVIAGG 210 (265)
T ss_pred HHHHHHHhcCCeEeecCCC-------ChHHHHHHHHh-CCCCEEEeCC
Confidence 3455689999999999853 22556667777 8888887643
No 137
>PRK08227 autoinducer 2 aldolase; Validated
Probab=32.59 E-value=3.5e+02 Score=26.15 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhCCcEEeecCCCCCCCChHHHHHHHHHHHhccCCcEEEEeC
Q 041825 201 FLRSLHKQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQNRPIIYSLS 252 (391)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~~~gr~i~ls~~ 252 (391)
++..-++.-+|.|-|+||..++ . ..++++++. +..|+++.-.
T Consensus 159 ~ia~aaRiaaELGADiVK~~y~-------~--~~f~~vv~a-~~vPVviaGG 200 (264)
T PRK08227 159 YFSLATRIAAEMGAQIIKTYYV-------E--EGFERITAG-CPVPIVIAGG 200 (264)
T ss_pred HHHHHHHHHHHHcCCEEecCCC-------H--HHHHHHHHc-CCCcEEEeCC
Confidence 5555567779999999999985 1 457777776 8888886543
No 138
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=32.40 E-value=94 Score=29.66 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCeEEEEe
Q 041825 121 TEIAKKVHDIGLKFGIHV 138 (391)
Q Consensus 121 k~lad~ih~~Glk~Giy~ 138 (391)
+.+++.+|++|+++.+|+
T Consensus 221 ~~~v~~~~~~G~~v~vWT 238 (264)
T cd08575 221 PNLFDHLRKRGIQVYLWV 238 (264)
T ss_pred HHHHHHHHhcCCcEEEEE
Confidence 678999999999999997
No 139
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=32.33 E-value=1.6e+02 Score=30.58 Aligned_cols=55 Identities=15% Similarity=0.264 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhCCcEEeecCCCCCC----------CChHHHHH----HHHHHHh---ccCCcEEEEeC
Q 041825 198 GKAFLRSLHKQYADWGVDFVKHDCAFGDD----------LDEGEIAV----VSEVFKG---QQNRPIIYSLS 252 (391)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~D~~~~~~----------~~~~~~~~----~~~Al~~---~~gr~i~ls~~ 252 (391)
-+.|.++.++.++.|+||.|-+|+=++.. .+.++|.. +|++|++ .-||...|++-
T Consensus 152 re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA 223 (441)
T COG3325 152 RENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKANYVLLLQELRKKLDKAGVEDGRHYQLTIA 223 (441)
T ss_pred HHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhhcccccCceEEEEEe
Confidence 34577888999999999999999966421 23456654 4666655 25566677664
No 140
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=32.15 E-value=1.2e+02 Score=29.69 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=36.0
Q ss_pred HHHHH-HHHHHHHHHHhhCCcEEeec-CCCCCCC----ChHHHH----HHHHHHHhccCCcEEEEeCC
Q 041825 196 GAGKA-FLRSLHKQYADWGVDFVKHD-CAFGDDL----DEGEIA----VVSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 196 p~~~~-~~~~~~~~~a~wGvdylK~D-~~~~~~~----~~~~~~----~~~~Al~~~~gr~i~ls~~~ 253 (391)
|..++ +++++++.+.++|+|.|-+| +-+.... +.+.|. .++++|++ .|..+.+.+.+
T Consensus 90 ~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~-~~~~l~~~v~~ 156 (318)
T cd02876 90 EQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHS-ANLKLILVIPP 156 (318)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhh-cCCEEEEEEcC
Confidence 44444 77888889999999999999 4333211 233444 45556665 56556665543
No 141
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=31.60 E-value=38 Score=26.91 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.4
Q ss_pred chhHHHHHHHHHHHhh
Q 041825 2 KFFALSILCFFSSLLL 17 (391)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (391)
|++++.|+|+.++|++
T Consensus 4 RlwiLslLAVtLtVAL 19 (100)
T PF05984_consen 4 RLWILSLLAVTLTVAL 19 (100)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6788899999999883
No 142
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=31.43 E-value=1.2e+02 Score=30.72 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhCCcEEeecCCC-CCCCCh--HHHHHHHHHHHh---ccCCcEEEEeCC
Q 041825 202 LRSLHKQYADWGVDFVKHDCAF-GDDLDE--GEIAVVSEVFKG---QQNRPIIYSLSP 253 (391)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~~~-~~~~~~--~~~~~~~~Al~~---~~gr~i~ls~~~ 253 (391)
+..++..++.=|+|+||-|-.. ...+.+ ++.++..+|+++ .+|+...|..+.
T Consensus 143 ~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Ni 200 (364)
T cd08210 143 LAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNV 200 (364)
T ss_pred HHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEec
Confidence 4566777888999999999643 333332 556555555543 177766665543
No 143
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=31.27 E-value=69 Score=31.41 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=23.9
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCCCCC
Q 041825 189 MAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCAFGD 225 (391)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~ 225 (391)
-.+|+..|+ +.++.+++||+|||-+-.+..+
T Consensus 137 pPlDp~EPe------NTAeAIasWgl~YiVlTSVDRD 167 (360)
T KOG2672|consen 137 PPLDPNEPE------NTAEAIASWGLDYIVLTSVDRD 167 (360)
T ss_pred cCCCCCCcc------cHHHHHHHcCCCeEEEEecccc
Confidence 458998886 4568899999999998665443
No 144
>PHA02119 hypothetical protein
Probab=31.13 E-value=42 Score=25.71 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=20.9
Q ss_pred CceeCCCCCCCCCCCCCHHHHHHHHHHcCCeE
Q 041825 103 RMVPDPERWPSSKGGKGFTEIAKKVHDIGLKF 134 (391)
Q Consensus 103 ~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~ 134 (391)
.+..+-.|||.- =-+.++|||++.|...
T Consensus 43 ~isf~~~kfp~i----~~~divdylr~lgy~~ 70 (87)
T PHA02119 43 KISFDVAKFPAI----MPKDIVDYLRSLGYDA 70 (87)
T ss_pred EEEeccccCCcc----ccHHHHHHHHHccchh
Confidence 356677899941 1389999999999763
No 145
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=31.11 E-value=88 Score=32.25 Aligned_cols=51 Identities=22% Similarity=0.381 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCcEEeecC-CCCCCCCh--HHHH----HHHHHHHhccCCcEEEEeCC
Q 041825 202 LRSLHKQYADWGVDFVKHDC-AFGDDLDE--GEIA----VVSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~~~----~~~~Al~~~~gr~i~ls~~~ 253 (391)
+..++..++.=|+||||=|- +....+.+ ++.. ++.+|-++ +|+..+|..+.
T Consensus 161 ~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~e-TG~~~~y~~Ni 218 (406)
T cd08207 161 TAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQR-TGRKVMYAFNI 218 (406)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHh-hCCcceEEEec
Confidence 44556677888999999994 44444443 4444 45556566 99988877654
No 146
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=30.90 E-value=86 Score=32.35 Aligned_cols=51 Identities=29% Similarity=0.418 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhCCcEEeecCC-CCCCCCh--HHHHH----HHHHHHhccCCcEEEEeCC
Q 041825 202 LRSLHKQYADWGVDFVKHDCA-FGDDLDE--GEIAV----VSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~~-~~~~~~~--~~~~~----~~~Al~~~~gr~i~ls~~~ 253 (391)
+..++..++.=|+|+||=|-. ....+.+ +++.+ +.+|-++ +|+..+|..+.
T Consensus 157 ~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~e-TG~~~~y~~Ni 214 (407)
T TIGR03332 157 LKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQ-TGHKTLYAVNL 214 (407)
T ss_pred HHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCcceEeecC
Confidence 345566778889999999954 3344443 45544 4555556 99988887664
No 147
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=30.66 E-value=98 Score=31.93 Aligned_cols=51 Identities=27% Similarity=0.427 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhCCcEEeecC-CCCCCCCh--HHHHH----HHHHHHhccCCcEEEEeCC
Q 041825 202 LRSLHKQYADWGVDFVKHDC-AFGDDLDE--GEIAV----VSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~~~~----~~~Al~~~~gr~i~ls~~~ 253 (391)
+...+..++.=|+|+||=|- +....+.+ ++..+ +++|-++ +|+..+|..+.
T Consensus 152 ~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~e-TG~~~~y~~Ni 209 (407)
T PRK09549 152 LKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYET-TGHKTLYAVNL 209 (407)
T ss_pred HHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHh-hCCcceEEEec
Confidence 34556667778999999995 44444543 45544 4555556 99988887764
No 148
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=30.55 E-value=1.5e+02 Score=29.70 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCeEEEEee
Q 041825 120 FTEIAKKVHDIGLKFGIHVM 139 (391)
Q Consensus 120 ~k~lad~ih~~Glk~Giy~~ 139 (391)
.-.||+.++++|+|+|+++-
T Consensus 66 vi~la~~l~~rG~~~gvvSR 85 (336)
T COG1663 66 VIWLAEALQARGVRVGVVSR 85 (336)
T ss_pred HHHHHHHHHhcCCeeEEEec
Confidence 68899999999999999973
No 149
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=29.82 E-value=1.1e+02 Score=29.85 Aligned_cols=83 Identities=13% Similarity=0.234 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhCCcEEeecCCCCCC--CChHHHHHH----HHHHHhcc---CCcEEEEeCCCCCC-Ch---hH-HHh
Q 041825 199 KAFLRSLHKQYADWGVDFVKHDCAFGDD--LDEGEIAVV----SEVFKGQQ---NRPIIYSLSPGTSA-TP---AM-AQK 264 (391)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~--~~~~~~~~~----~~Al~~~~---gr~i~ls~~~~~~~-~p---~~-~~~ 264 (391)
+.|++++++.+.++|+|-|-+|+-+... .+.+.|..+ +.++.+ . ++...+++...... .. .. ...
T Consensus 93 ~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~-~~~~~~~~~lsi~v~~~~~~~~~~~~~~~~ 171 (334)
T smart00636 93 KKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDK-EGAEGKGYLLTIAVPAGPDKIDKGYGDLPA 171 (334)
T ss_pred HHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHH-hcccCCceEEEEEecCChHHHHhhhhhHHH
Confidence 3477888899999999999999876543 234456544 444443 2 45677777642210 00 11 134
Q ss_pred hhccccEEEecC-CCCCCh
Q 041825 265 INGLANMYRVTG-DDWDSW 282 (391)
Q Consensus 265 ~~~~an~~Ris~-D~~~~W 282 (391)
+.+++|.+-+.+ |....|
T Consensus 172 l~~~vD~v~vm~YD~~~~~ 190 (334)
T smart00636 172 IAKYLDFINLMTYDFHGAW 190 (334)
T ss_pred HHhhCcEEEEeeeccCCCC
Confidence 455677765533 443333
No 150
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=29.68 E-value=1.1e+02 Score=27.08 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHcCCeEEEEee
Q 041825 119 GFTEIAKKVHDIGLKFGIHVM 139 (391)
Q Consensus 119 G~k~lad~ih~~Glk~Giy~~ 139 (391)
|++.+.++|+++|++++|-+.
T Consensus 47 gv~e~L~~Lk~~g~~l~I~Sn 67 (170)
T TIGR01668 47 ALRDWIEELKAAGRKLLIVSN 67 (170)
T ss_pred hHHHHHHHHHHcCCEEEEEeC
Confidence 699999999999999988775
No 151
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=29.67 E-value=3.1e+02 Score=27.32 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=29.0
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHhhCCcEEeecCC
Q 041825 188 FMAVNTKLGAGKAFLRSLHKQYADWGVDFVKHDCA 222 (391)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (391)
-..+|+-+|..=+|=-.+++..++.|||=|.+|++
T Consensus 184 ehWVd~y~~~~WeYNvtIAKEa~~fGfdEiQFDYI 218 (400)
T COG1306 184 EHWVDAYDKNLWEYNVTIAKEAAKFGFDEIQFDYI 218 (400)
T ss_pred eeeecccchhhhhhhHHHHHHHHHcCccceeeeEE
Confidence 35688888888777677788899999999999975
No 152
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=29.63 E-value=1.7e+02 Score=28.62 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=43.9
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCcEEeecCCCCCCCChHHHHHHHHHHHhcc--CCcEEEEeCC
Q 041825 193 TKLGAGKAFLRSLHKQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQ--NRPIIYSLSP 253 (391)
Q Consensus 193 ~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~~~--gr~i~ls~~~ 253 (391)
.+.-+.++++...++.|.+-|||+|=+.-+ .+.++.+.+.+++++ . +.|++++++.
T Consensus 133 ~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~----~~~~E~~~~~~~~~~-~~~~~pv~is~~~ 190 (304)
T PRK09485 133 LSEEELQDFHRPRIEALAEAGADLLACETI----PNLDEAEALVELLKE-EFPGVPAWLSFTL 190 (304)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCCEEEEecc----CCHHHHHHHHHHHHH-hcCCCcEEEEEEe
Confidence 456678888888889999999999987743 346778888888886 4 8999988863
No 153
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=29.59 E-value=1.1e+02 Score=25.43 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHH
Q 041825 50 ISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHD 129 (391)
Q Consensus 50 i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~ 129 (391)
-|-+........+++.+++.|++-|+.|-|= .+|-+ =++++++-+++
T Consensus 58 ~n~~aA~~vG~lla~ra~~~gi~~vvfDrgg----------------------------~~yhG-----rV~a~a~~are 104 (109)
T CHL00139 58 STCDASKLVGQKLAKKSLKKGITKVVFDRGG----------------------------KLYHG-----RIKALAEAARE 104 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEcCCC----------------------------Cccch-----HHHHHHHHHHH
Confidence 3445555566677888999999999998321 12222 49999999999
Q ss_pred cCCeE
Q 041825 130 IGLKF 134 (391)
Q Consensus 130 ~Glk~ 134 (391)
.||+|
T Consensus 105 ~GL~f 109 (109)
T CHL00139 105 AGLQF 109 (109)
T ss_pred hCCCC
Confidence 99986
No 154
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=29.49 E-value=1.4e+02 Score=27.76 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.6
Q ss_pred HHHHHHhhCCcEEeecCCC
Q 041825 205 LHKQYADWGVDFVKHDCAF 223 (391)
Q Consensus 205 ~~~~~a~wGvdylK~D~~~ 223 (391)
.++.+.+||||.|--|+..
T Consensus 218 ~~~~l~~~GVdgiiTD~~~ 236 (237)
T cd08583 218 DAQEYKKLGVYGIYTDFLT 236 (237)
T ss_pred HHHHHHHcCCCEEEeCCCC
Confidence 3678899999999988763
No 155
>KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=29.32 E-value=40 Score=33.72 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=21.1
Q ss_pred HHHHHHHHHHcCCeEEEEeecCc
Q 041825 120 FTEIAKKVHDIGLKFGIHVMKGI 142 (391)
Q Consensus 120 ~k~lad~ih~~Glk~Giy~~pg~ 142 (391)
.+.|++.+++.+++||||..++.
T Consensus 152 V~EL~~A~rk~dirfGLY~SlfE 174 (454)
T KOG3340|consen 152 VGELASAIRKRDIRFGLYYSLFE 174 (454)
T ss_pred HHHHHHHHHhcCcceeEeecHHH
Confidence 79999999999999999998764
No 156
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=29.07 E-value=1.1e+02 Score=31.64 Aligned_cols=51 Identities=14% Similarity=0.043 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhCCcEEeecC-CCCCCCCh--HHHHH----HHHHHHhccCCcEEEEeCC
Q 041825 202 LRSLHKQYADWGVDFVKHDC-AFGDDLDE--GEIAV----VSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~~~~----~~~Al~~~~gr~i~ls~~~ 253 (391)
+...+..++.=|+|+||=|- +....+.+ +++.+ +.+|-++ +|+..+|..+.
T Consensus 149 ~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~e-TG~~~~y~~Ni 206 (412)
T cd08213 149 HAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAE-TGERKAYLANI 206 (412)
T ss_pred HHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHh-hCCcceEEEEe
Confidence 45566778889999999994 44344443 45544 4555556 99988877664
No 157
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=28.85 E-value=2.3e+02 Score=27.04 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhCCcEEeecCCCCCCCChHHH----HHHHHHHHhccC
Q 041825 199 KAFLRSLHKQYADWGVDFVKHDCAFGDDLDEGEI----AVVSEVFKGQQN 244 (391)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~~----~~~~~Al~~~~g 244 (391)
+.+++++++.+.++|+|.|-+|+-++. .+.+.+ +.++++|++ .+
T Consensus 99 ~~fv~S~~~~l~~~~fDGiDiDwE~~~-~d~~~f~~ll~~l~~~l~~-~~ 146 (253)
T cd06544 99 SNAVSSLTSIIQTYNLDGIDIDYEHFP-ADPDTFVECIGQLITELKN-NG 146 (253)
T ss_pred HHHHHHHHHHHHHhCCCceeeecccCC-cCHHHHHHHHHHHHHHhhh-cC
Confidence 455788888899999999999997652 334444 446667766 44
No 158
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=28.66 E-value=53 Score=31.31 Aligned_cols=26 Identities=12% Similarity=0.431 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHHHHHhhccCCceEEEecc
Q 041825 49 IISEQEFLESADIVAKRLLPHGYEYVVVDY 78 (391)
Q Consensus 49 ~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDd 78 (391)
.++.+.+.+..+ .|++.+|+||++|+
T Consensus 96 alt~E~v~~vv~----eL~~~~fDyIi~Ds 121 (272)
T COG2894 96 ALTPEGVKKVVN----ELKAMDFDYIIIDS 121 (272)
T ss_pred cCCHHHHHHHHH----HHHhcCCCEEEecC
Confidence 477788777776 46778999999996
No 159
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=28.37 E-value=40 Score=38.88 Aligned_cols=49 Identities=14% Similarity=0.378 Sum_probs=35.1
Q ss_pred hccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeec
Q 041825 66 LLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMK 140 (391)
Q Consensus 66 l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~p 140 (391)
|-++||+||.++|.=+..+ ++.+ +.-|- ++.|.+-.+++|+.||+=++-
T Consensus 256 ~~~~g~~~~~~~~~~f~~d-------------------l~~~-~~~~~------~~~l~~~~~~~~~~fgvk~~n 304 (1012)
T TIGR03315 256 MDEMGFDYIVLKEESFSHD-------------------LQYE-DAVAM------LQRLQLLAKEKGLGFGVKLTN 304 (1012)
T ss_pred HHhcCCceEecchhhcccc-------------------cchh-HHHHH------HHHHHHHHHHcCCeeeEEEec
Confidence 4578999999998777642 3322 12232 688888889999999998763
No 160
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=28.20 E-value=1.4e+02 Score=28.81 Aligned_cols=18 Identities=6% Similarity=-0.077 Sum_probs=16.2
Q ss_pred HHHHHHHHHc-CCeEEEEe
Q 041825 121 TEIAKKVHDI-GLKFGIHV 138 (391)
Q Consensus 121 k~lad~ih~~-Glk~Giy~ 138 (391)
+.+++.+|++ |+++-.|+
T Consensus 219 ~~~V~~~h~~~gl~V~~WT 237 (263)
T cd08580 219 PAAVDCFRRNSKVKIVLFG 237 (263)
T ss_pred HHHHHHHHhcCCcEEEEEE
Confidence 7889999999 99998886
No 161
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=28.18 E-value=1.1e+02 Score=30.55 Aligned_cols=83 Identities=17% Similarity=0.285 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhCCcEEeecCCCCCC-----CChHHHH----HHHHHHHhccCCcEEEEeCCCCCC----ChhHHHhh
Q 041825 199 KAFLRSLHKQYADWGVDFVKHDCAFGDD-----LDEGEIA----VVSEVFKGQQNRPIIYSLSPGTSA----TPAMAQKI 265 (391)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~-----~~~~~~~----~~~~Al~~~~gr~i~ls~~~~~~~----~p~~~~~~ 265 (391)
+.+++++++.+.++|+|.|-+|+-++.. .+.+.|. .++++|++ .++...+++...... .....+.+
T Consensus 98 ~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~-~~~~~~ls~av~~~~~~~~~~~d~~~l 176 (362)
T cd02872 98 KTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEP-EAPRLLLTAAVSAGKETIDAAYDIPEI 176 (362)
T ss_pred HHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHh-hCcCeEEEEEecCChHHHhhcCCHHHH
Confidence 4578999999999999999999865432 2234454 45666666 544566666532110 00011234
Q ss_pred hccccEEEecC-CCCCCh
Q 041825 266 NGLANMYRVTG-DDWDSW 282 (391)
Q Consensus 266 ~~~an~~Ris~-D~~~~W 282 (391)
.+++|..-+.. |....|
T Consensus 177 ~~~vD~v~vmtYD~~~~~ 194 (362)
T cd02872 177 SKYLDFINVMTYDFHGSW 194 (362)
T ss_pred hhhcceEEEecccCCCCC
Confidence 55677766654 544334
No 162
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=27.82 E-value=2.5e+02 Score=28.42 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=48.7
Q ss_pred cccCCHHHHHHHHHHHH---HhhccCCceEEEecc--------cccccccCCcccCCCCccccCCCCCceeCCCCCCCCC
Q 041825 47 CWIISEQEFLESADIVA---KRLLPHGYEYVVVDY--------LWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSK 115 (391)
Q Consensus 47 ~~~i~e~~v~~~ad~~~---~~l~~~Gy~~v~IDd--------gW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~ 115 (391)
-..+|+++|.+.++.++ ...+++||+-|.|=. .+.... |.+ .|+||-=.-|-.||+
T Consensus 136 pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~t-----N~R-----tD~YGGSlENR~Rf~--- 202 (363)
T COG1902 136 PRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLT-----NKR-----TDEYGGSLENRARFL--- 202 (363)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCcc-----CCC-----CCccCCcHHHHHHHH---
Confidence 45689999999998542 467889999998843 333221 111 377876566667887
Q ss_pred CCCCHHHHHHHHHH---cCCeEEEEeec
Q 041825 116 GGKGFTEIAKKVHD---IGLKFGIHVMK 140 (391)
Q Consensus 116 ~~~G~k~lad~ih~---~Glk~Giy~~p 140 (391)
..+++.+++ ..+-+|+-++|
T Consensus 203 -----~EVv~aVr~~vg~~~~vg~Rls~ 225 (363)
T COG1902 203 -----LEVVDAVREAVGADFPVGVRLSP 225 (363)
T ss_pred -----HHHHHHHHHHhCCCceEEEEECc
Confidence 466666666 23335665554
No 163
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=27.59 E-value=2e+02 Score=29.04 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=32.1
Q ss_pred HhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCCe
Q 041825 64 KRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLK 133 (391)
Q Consensus 64 ~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk 133 (391)
+.+.++|-+-|+|.|+|..... ...++.=.+| .++.+.+.+++.+-.
T Consensus 196 ~~qi~aGAdavqifDsW~g~l~-----------------~~~~~~f~~~------~~~~i~~~vk~~~~~ 242 (352)
T COG0407 196 KAQIEAGADAVQIFDSWAGVLS-----------------MIDYDEFVLP------YMKRIVREVKEVKGG 242 (352)
T ss_pred HHHHHhCCCEEEeeccccccCC-----------------cccHHHHhhh------HHHHHHHHHHHhCCC
Confidence 4567789999999999975321 1112222345 599999999986663
No 164
>PLN02489 homocysteine S-methyltransferase
Probab=27.11 E-value=2e+02 Score=28.74 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=43.4
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCcEEeecCCCCCCCChHHHHHHHHHHHhccC--CcEEEEeC
Q 041825 193 TKLGAGKAFLRSLHKQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQN--RPIIYSLS 252 (391)
Q Consensus 193 ~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~~~g--r~i~ls~~ 252 (391)
.+.-+.+++++..++.|.+-|||+|-+.-+ .+.++..++.+++++ .+ .|++++++
T Consensus 160 ~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~----~~l~E~~a~~~~~~~-~~~~~p~~iS~t 216 (335)
T PLN02489 160 VTLEKLKDFHRRRLQVLAEAGPDLIAFETI----PNKLEAQAYVELLEE-ENIKIPAWISFN 216 (335)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecc----CChHHHHHHHHHHHH-cCCCCeEEEEEE
Confidence 566788889988899999999999998754 345677788888887 54 78887775
No 165
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=27.10 E-value=82 Score=29.68 Aligned_cols=36 Identities=11% Similarity=0.214 Sum_probs=28.2
Q ss_pred ceeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchh
Q 041825 104 MVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQ 145 (391)
Q Consensus 104 ~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~ 145 (391)
++...+.-|+ +..+..+||+.|.|+||=+.|+++-.
T Consensus 88 It~H~E~~~~------~~r~i~~Ik~~G~kaGv~lnP~Tp~~ 123 (220)
T COG0036 88 ITFHAEATEH------IHRTIQLIKELGVKAGLVLNPATPLE 123 (220)
T ss_pred EEEEeccCcC------HHHHHHHHHHcCCeEEEEECCCCCHH
Confidence 4444454454 89999999999999999999987643
No 166
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=26.14 E-value=1.1e+02 Score=31.86 Aligned_cols=51 Identities=22% Similarity=0.068 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCcEEeecC-CCCCCCCh--HHHH----HHHHHHHhccCCcEEEEeCC
Q 041825 202 LRSLHKQYADWGVDFVKHDC-AFGDDLDE--GEIA----VVSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~~~----~~~~Al~~~~gr~i~ls~~~ 253 (391)
+...+..+..=|+||||=|- +....+.+ +++. ++.+|-++ +|+..+|..+.
T Consensus 178 ~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~e-TG~~~~ya~Ni 235 (424)
T cd08208 178 FAELGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAE-TGVPKIYLANI 235 (424)
T ss_pred HHHHHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHh-hCCcceEEEEc
Confidence 35556777888999999994 44444543 4554 45555566 99887776553
No 167
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=26.05 E-value=68 Score=21.43 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=10.4
Q ss_pred CchhHHHHHHHHHHHh
Q 041825 1 MKFFALSILCFFSSLL 16 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (391)
||.|+++++.++++++
T Consensus 1 Mk~l~~a~~l~lLal~ 16 (36)
T PF08194_consen 1 MKCLSLAFALLLLALA 16 (36)
T ss_pred CceeHHHHHHHHHHHH
Confidence 8888885555555544
No 168
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=26.05 E-value=1.3e+02 Score=31.11 Aligned_cols=51 Identities=16% Similarity=0.073 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhCCcEEeecC-CCCCCCCh--HHHH----HHHHHHHhccCCcEEEEeCC
Q 041825 202 LRSLHKQYADWGVDFVKHDC-AFGDDLDE--GEIA----VVSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~~~----~~~~Al~~~~gr~i~ls~~~ 253 (391)
+...+..++.=|+|+||=|- +....+.+ +++. ++.+|-++ +|+..+|..+.
T Consensus 150 ~a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~e-TG~~~~y~~Ni 207 (414)
T cd08206 150 YARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAE-TGEAKGHYLNI 207 (414)
T ss_pred HHHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHh-hCCcceEEecc
Confidence 34556667788999999996 44444443 4544 45555566 99988887764
No 169
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=25.79 E-value=79 Score=27.45 Aligned_cols=18 Identities=11% Similarity=0.203 Sum_probs=16.2
Q ss_pred CchhHHHHHHHHHHHhhc
Q 041825 1 MKFFALSILCFFSSLLLH 18 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (391)
||+|.+.|++|++.-|+.
T Consensus 1 MR~l~~~LL~L~LsGCS~ 18 (133)
T PRK10781 1 MRALPICLLALMLTGCSM 18 (133)
T ss_pred CchHHHHHHHHHHhhccc
Confidence 999999999999998864
No 170
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.24 E-value=67 Score=26.15 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhcccccccccccccCCCCCCc
Q 041825 3 FFALSILCFFSSLLLHRIPSANAADKETEHAALPP 37 (391)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP 37 (391)
+|+|+||++|+++.-+..+..+.++.........+
T Consensus 8 lL~l~LA~lLlisSevaa~~~~~~~~~~~~~~v~~ 42 (95)
T PF07172_consen 8 LLGLLLAALLLISSEVAARELEETEKEEEENEVQD 42 (95)
T ss_pred HHHHHHHHHHHHHhhhhhHHhhhccccccCCCCCc
No 171
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=25.14 E-value=1.6e+02 Score=28.67 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCCeEEEEe
Q 041825 121 TEIAKKVHDIGLKFGIHV 138 (391)
Q Consensus 121 k~lad~ih~~Glk~Giy~ 138 (391)
+.+++.+|+.|+++.+|+
T Consensus 251 ~~~v~~~~~~G~~v~vWT 268 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWV 268 (300)
T ss_pred HHHHHHHHHCCCEEEEee
Confidence 678889999999988886
No 172
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.76 E-value=3e+02 Score=27.14 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=37.4
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHh-hC--CcEEeecCCCCCCC----C-hH---HH-HHHHHHHHhccCCcEEE
Q 041825 188 FMAVNTKLGAGKAFLRSLHKQYAD-WG--VDFVKHDCAFGDDL----D-EG---EI-AVVSEVFKGQQNRPIIY 249 (391)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~-wG--vdylK~D~~~~~~~----~-~~---~~-~~~~~Al~~~~gr~i~l 249 (391)
...||+++|++.++++.+++.+++ .. .+||-+ +++.. + .+ .| ..+.+.+++ .|+.++.
T Consensus 129 ~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~~~~Hi---GgDE~~~~~~~~~~~~~f~~~~~~~v~~-~gk~~~~ 198 (326)
T cd06564 129 KDTLDISNPEAVKFVKALFDEYLDGFNPKSDTVHI---GADEYAGDAGYAEAFRAYVNDLAKYVKD-KGKTPRV 198 (326)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHhcCCCCCEEEe---ccccccccCccHHHHHHHHHHHHHHHHH-cCCeEEE
Confidence 347899999999999999988876 33 445443 22221 1 12 22 456777777 7876554
No 173
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=24.45 E-value=70 Score=32.00 Aligned_cols=40 Identities=25% Similarity=0.231 Sum_probs=28.1
Q ss_pred ccccccccCCHHHHHHHHHHHH---HhhccCCceEEEecccccc
Q 041825 42 SYDAFCWIISEQEFLESADIVA---KRLLPHGYEYVVVDYLWYR 82 (391)
Q Consensus 42 SW~~~~~~i~e~~v~~~ad~~~---~~l~~~Gy~~v~IDdgW~~ 82 (391)
+.+.+|.+ .++.+.+.|+.++ +.|.++|..||+||+--..
T Consensus 139 ~~~~~Y~~-~~el~~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~ 181 (339)
T PRK09121 139 LYDDHYKS-REKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFN 181 (339)
T ss_pred hccccCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEecccHHh
Confidence 44455543 3666677777764 4789999999999986543
No 174
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=24.31 E-value=97 Score=22.44 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=12.2
Q ss_pred CchhHHHHHHHHHHHhhc
Q 041825 1 MKFFALSILCFFSSLLLH 18 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (391)
||-++++.+.+++++-..
T Consensus 1 MRTL~LLaAlLLlAlqaQ 18 (52)
T PF00879_consen 1 MRTLALLAALLLLALQAQ 18 (52)
T ss_pred CcHHHHHHHHHHHHHHHh
Confidence 888887777666665533
No 175
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.30 E-value=1.5e+02 Score=28.13 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCeEEEEe
Q 041825 121 TEIAKKVHDIGLKFGIHV 138 (391)
Q Consensus 121 k~lad~ih~~Glk~Giy~ 138 (391)
+.+++.+|++|+++.+|+
T Consensus 213 ~~~v~~~~~~Gl~v~~wT 230 (265)
T cd08564 213 EEFVKKAHENGLKVMTYF 230 (265)
T ss_pred HHHHHHHHHcCCEEEEec
Confidence 578888999999998886
No 176
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.15 E-value=1.5e+02 Score=27.59 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=13.3
Q ss_pred HHHHHhhCCcEEeecC
Q 041825 206 HKQYADWGVDFVKHDC 221 (391)
Q Consensus 206 ~~~~a~wGvdylK~D~ 221 (391)
++++.+||||.|--|+
T Consensus 213 ~~~l~~~GVdgiiTD~ 228 (229)
T cd08581 213 ALALAARGVALIETDN 228 (229)
T ss_pred HHHHHHhCCcEEEcCC
Confidence 5788999999997764
No 177
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=24.11 E-value=1.4e+02 Score=30.23 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhCCcEEeecCCCCCC-C-C-hHHHHHHHHHHHhc---cCCcEEEEeC
Q 041825 202 LRSLHKQYADWGVDFVKHDCAFGDD-L-D-EGEIAVVSEVFKGQ---QNRPIIYSLS 252 (391)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~~~~~~-~-~-~~~~~~~~~Al~~~---~gr~i~ls~~ 252 (391)
+..++..+.+=|+|+||.|...++. + . .++.+...+|++++ +|+..+|..+
T Consensus 148 la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~n 204 (367)
T cd08205 148 LAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPN 204 (367)
T ss_pred HHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEE
Confidence 4556778888999999999765432 2 2 25666666666432 6775444433
No 178
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=23.69 E-value=91 Score=29.10 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=25.5
Q ss_pred CCceeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeec
Q 041825 102 GRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMK 140 (391)
Q Consensus 102 G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~p 140 (391)
|.+.-...-|| |.+.+.++|+++|.++++=+..
T Consensus 17 G~l~~~~~~~p------ga~e~L~~L~~~G~~~~ivTN~ 49 (242)
T TIGR01459 17 GVIIDGNHTYP------GAVQNLNKIIAQGKPVYFVSNS 49 (242)
T ss_pred cccccCCccCc------cHHHHHHHHHHCCCEEEEEeCC
Confidence 44333345588 7999999999999999997764
No 179
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=23.66 E-value=5.6e+02 Score=25.89 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHcCCeE
Q 041825 118 KGFTEIAKKVHDIGLKF 134 (391)
Q Consensus 118 ~G~k~lad~ih~~Glk~ 134 (391)
.|++.|.+++++.|+.+
T Consensus 169 e~l~~L~~~~~~~Gl~~ 185 (360)
T PRK12595 169 EGLKILKQVADEYGLAV 185 (360)
T ss_pred HHHHHHHHHHHHcCCCE
Confidence 48999999999999986
No 180
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=23.55 E-value=1.6e+02 Score=36.04 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=48.3
Q ss_pred ccccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCC-CCCCCCCCHHHHH
Q 041825 46 FCWIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERW-PSSKGGKGFTEIA 124 (391)
Q Consensus 46 ~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kF-P~~~~~~G~k~la 124 (391)
+....+-+.+.+.+++ |+++|++.|-|=--+.... | ...|.-+.|..+. |..++.++++.|+
T Consensus 751 ~~~~~tf~~~~~~l~Y----l~~LGv~~i~lsPi~~a~~--g-----------s~hGYdv~D~~~idp~lG~~edf~~Lv 813 (1693)
T PRK14507 751 FHKDFTFADAEAILPY----LAALGISHVYASPILKARP--G-----------STHGYDIVDHSQINPEIGGEEGFERFC 813 (1693)
T ss_pred eCCCCCHHHHHHHhHH----HHHcCCCEEEECCCcCCCC--C-----------CCCCCCCCCCCccCcccCCHHHHHHHH
Confidence 3445677777777775 6789999997766665321 1 0134433333222 2222235899999
Q ss_pred HHHHHcCCeEEEEeec
Q 041825 125 KKVHDIGLKFGIHVMK 140 (391)
Q Consensus 125 d~ih~~Glk~Giy~~p 140 (391)
+.+|++||++=|=+.|
T Consensus 814 ~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 814 AALKAHGLGQLLDIVP 829 (1693)
T ss_pred HHHHHCCCEEEEEecc
Confidence 9999999997554433
No 181
>PRK13680 hypothetical protein; Provisional
Probab=23.46 E-value=1.9e+02 Score=24.53 Aligned_cols=54 Identities=24% Similarity=0.155 Sum_probs=31.5
Q ss_pred CchhHHHHHHHHHHHhhcccccccccccccCCCCCCceEeeccccccccCCHHHHHHHHH--HHHHhhc
Q 041825 1 MKFFALSILCFFSSLLLHRIPSANAADKETEHAALPPRGWNSYDAFCWIISEQEFLESAD--IVAKRLL 67 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pPmGWnSW~~~~~~i~e~~v~~~ad--~~~~~l~ 67 (391)
|++.+++.+++++++.+.. |++ ++.+...+=|. ...++++.|..+++ ++.+.+.
T Consensus 1 ~~~~~l~~~~~l~~~~~~~--sa~---~~~~r~akfps--------C~~L~~~QvaaqVK~DflqNRI~ 56 (117)
T PRK13680 1 KKRGALLGLLLLSACGSVF--AAN---AETSRSVKFPK--------CEGLDAAGIAASVKRDYLQNRIA 56 (117)
T ss_pred CchhhhHHHHHHHHHHhHh--hhc---cccccccCcCc--------cCCCCHHHHHHHHHHHHhhcccc
Confidence 6777777777776555443 222 22233333332 45799999999885 4554443
No 182
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=23.45 E-value=1.6e+02 Score=27.46 Aligned_cols=49 Identities=20% Similarity=0.449 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCC
Q 041825 53 QEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGL 132 (391)
Q Consensus 53 ~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Gl 132 (391)
+........+++.+...|.+-|+.|=+=+ +|=+ =+++|||.+++.||
T Consensus 163 eaA~~VGk~IAerAl~kGI~kVvFDRgGy----------------------------~YHG-----RVkALAdaARe~GL 209 (211)
T PTZ00032 163 KAAYELGKLIGRKALSKGISKVRFDRAHY----------------------------KYAG-----KVEALAEGARAVGL 209 (211)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCCCC----------------------------eehh-----HHHHHHHHHHHcCC
Confidence 44455556678889999999999982111 1211 39999999999999
Q ss_pred eE
Q 041825 133 KF 134 (391)
Q Consensus 133 k~ 134 (391)
+|
T Consensus 210 kF 211 (211)
T PTZ00032 210 QF 211 (211)
T ss_pred CC
Confidence 86
No 183
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=23.34 E-value=1.7e+02 Score=27.74 Aligned_cols=18 Identities=6% Similarity=0.167 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCeEEEEe
Q 041825 121 TEIAKKVHDIGLKFGIHV 138 (391)
Q Consensus 121 k~lad~ih~~Glk~Giy~ 138 (391)
+.+++.+|+.|+++.+|+
T Consensus 213 ~~~v~~~~~~g~~v~~WT 230 (252)
T cd08574 213 AQEIREYSKANISVNLYV 230 (252)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 467788888888877775
No 184
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=23.01 E-value=89 Score=29.23 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHcCCeEEEEeec
Q 041825 109 ERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMK 140 (391)
Q Consensus 109 ~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~p 140 (391)
.-|| |+.++.+++|++|++.+|++.-
T Consensus 95 ~lyp------gv~e~L~~Lk~~G~~l~I~Sn~ 120 (220)
T TIGR01691 95 HLYP------DVPPALEAWLQLGLRLAVYSSG 120 (220)
T ss_pred CcCc------CHHHHHHHHHHCCCEEEEEeCC
Confidence 3577 6999999999999999999863
No 185
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=22.95 E-value=2.3e+02 Score=30.72 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=44.7
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCcEEeecCCCCCCCChHHHHHHHHHHHhccC-CcEEEEeCC
Q 041825 193 TKLGAGKAFLRSLHKQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQN-RPIIYSLSP 253 (391)
Q Consensus 193 ~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~~~g-r~i~ls~~~ 253 (391)
.+..+.++|++..++.+.+-|||+|=+.-+ .+.++.+++.+++++ .+ .|+++|++.
T Consensus 118 ~~~~~~~~~~~~~~~~l~~~gvD~l~~ET~----~~~~Ea~a~~~a~~~-~~~~p~~~Sf~~ 174 (612)
T PRK08645 118 ISLEEIRREFREQIDALLEEGVDGLLLETF----YDLEELLLALEAARE-KTDLPIIAQVAF 174 (612)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcc----CCHHHHHHHHHHHHH-hCCCcEEEEEEE
Confidence 356778899999999999999999987754 346778888888887 65 899888763
No 186
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=22.87 E-value=44 Score=33.62 Aligned_cols=34 Identities=12% Similarity=0.014 Sum_probs=30.3
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhhCC-cEEeecCC
Q 041825 189 MAVNTKLGAGKAFLRSLHKQYADWGV-DFVKHDCA 222 (391)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGv-dylK~D~~ 222 (391)
.+.|.+||.+++....+...+.+.|| ++.|++.+
T Consensus 263 HvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~m 297 (410)
T KOG0410|consen 263 HVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNM 297 (410)
T ss_pred EEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHH
Confidence 67899999999999999999999999 68887764
No 187
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=22.84 E-value=1.7e+02 Score=30.62 Aligned_cols=51 Identities=14% Similarity=0.058 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhCCcEEeecC-CCCCCCCh--HHH----HHHHHHHHhccCCcEEEEeCC
Q 041825 202 LRSLHKQYADWGVDFVKHDC-AFGDDLDE--GEI----AVVSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~~----~~~~~Al~~~~gr~i~ls~~~ 253 (391)
+..++..++.=|+||||=|- +....+.+ ++. +++.+|-++ +|+..+|..+.
T Consensus 163 ~A~~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~e-TG~~~~y~~Ni 220 (450)
T cd08212 163 YGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAE-TGEVKGHYLNV 220 (450)
T ss_pred HHHHHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHh-hCCcceeeccc
Confidence 45567778889999999994 44444443 444 445666666 99887776653
No 188
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=22.79 E-value=5.2e+02 Score=23.16 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCeEEEE
Q 041825 120 FTEIAKKVHDIGLKFGIH 137 (391)
Q Consensus 120 ~k~lad~ih~~Glk~Giy 137 (391)
++.+.++++++|+++++-
T Consensus 91 ~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 91 IKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 688999999999998884
No 189
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=22.77 E-value=2.6e+02 Score=27.64 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=39.0
Q ss_pred ccCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHH
Q 041825 48 WIISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKV 127 (391)
Q Consensus 48 ~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~i 127 (391)
..+..+...+..+ ++|++|.+.|.+=--|....+. -|.+..+.. .-+..+.+-+
T Consensus 19 ~r~p~~~W~~~l~----k~ka~G~n~v~~yv~W~~he~~--------------~g~~df~g~--------~dl~~f~~~a 72 (319)
T PF01301_consen 19 FRIPPEYWRDRLQ----KMKAAGLNTVSTYVPWNLHEPE--------------EGQFDFTGN--------RDLDRFLDLA 72 (319)
T ss_dssp GGS-GGGHHHHHH----HHHHTT-SEEEEE--HHHHSSB--------------TTB---SGG--------G-HHHHHHHH
T ss_pred ccCChhHHHHHHH----HHHhCCcceEEEeccccccCCC--------------CCcccccch--------hhHHHHHHHH
Confidence 3455556666554 5788999999888788765421 133332211 1489999999
Q ss_pred HHcCCeEEEEeecCc
Q 041825 128 HDIGLKFGIHVMKGI 142 (391)
Q Consensus 128 h~~Glk~Giy~~pg~ 142 (391)
++.||++=|+..|-+
T Consensus 73 ~~~gl~vilrpGpyi 87 (319)
T PF01301_consen 73 QENGLYVILRPGPYI 87 (319)
T ss_dssp HHTT-EEEEEEES--
T ss_pred HHcCcEEEeccccee
Confidence 999998766665554
No 190
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=22.54 E-value=67 Score=37.08 Aligned_cols=49 Identities=14% Similarity=0.340 Sum_probs=34.8
Q ss_pred hccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeec
Q 041825 66 LLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMK 140 (391)
Q Consensus 66 l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~p 140 (391)
|-++||+||.++|.=+..+ ++.+ +.-|- ++.|.+-.+++|+.||+=++-
T Consensus 258 ~d~~g~~~~~~~~~~f~~d-------------------l~~~-~a~~m------~~~l~~~~~~~~~~fgvk~tn 306 (1019)
T PRK09853 258 LDKMGFDYIGLKEEHFDHD-------------------LQYT-DAVEM------LERLMALAKEKGLGFGVKLTN 306 (1019)
T ss_pred HHhcCCceEecchhhcccc-------------------cchh-HHHHH------HHHHHHHHHHcCceeeEEEec
Confidence 4578999999998776542 3322 11232 688888889999999998863
No 191
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=22.53 E-value=2.5e+02 Score=27.80 Aligned_cols=17 Identities=24% Similarity=0.118 Sum_probs=14.6
Q ss_pred HHHHHHhhCCcEEeecC
Q 041825 205 LHKQYADWGVDFVKHDC 221 (391)
Q Consensus 205 ~~~~~a~wGvdylK~D~ 221 (391)
.++.+.++|||.|--|+
T Consensus 258 ~~~~l~~~GVDgIiTD~ 274 (315)
T cd08609 258 LFSLLWCSGVSSVTTNA 274 (315)
T ss_pred HHHHHHhcCCCEEEcCC
Confidence 36788999999999887
No 192
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=22.48 E-value=1.3e+02 Score=23.01 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCeEEEEeecCc
Q 041825 121 TEIAKKVHDIGLKFGIHVMKGI 142 (391)
Q Consensus 121 k~lad~ih~~Glk~Giy~~pg~ 142 (391)
+..++.||++|.+.--|+..|.
T Consensus 39 ~~~I~~L~~~G~~vicY~s~Gs 60 (74)
T PF03537_consen 39 KEEIARLKAQGKKVICYFSIGS 60 (74)
T ss_dssp HHHHHHHHHTT-EEEEEEESSE
T ss_pred HHHHHHHHHCCCEEEEEEeCce
Confidence 6778889999999999999885
No 193
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=22.38 E-value=1.9e+02 Score=27.49 Aligned_cols=18 Identities=6% Similarity=0.056 Sum_probs=12.8
Q ss_pred HHHHHHHHHcCCeEEEEe
Q 041825 121 TEIAKKVHDIGLKFGIHV 138 (391)
Q Consensus 121 k~lad~ih~~Glk~Giy~ 138 (391)
+.+++.+|+.|+++.+|+
T Consensus 218 ~~~v~~~~~~G~~v~vWT 235 (258)
T cd08573 218 SAYVRYWRARGIRVIAWT 235 (258)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 466777777777777775
No 194
>PF09863 DUF2090: Uncharacterized protein conserved in bacteria (DUF2090); InterPro: IPR018659 This domain, found in various prokaryotic carbohydrate kinases, has no known function.
Probab=22.28 E-value=1.8e+02 Score=28.85 Aligned_cols=128 Identities=19% Similarity=0.265 Sum_probs=70.6
Q ss_pred HHHHHHHhhCCc-EEeecCCCCCCCCh-------HHHHHHHHHHHhccCCcEEEEeCCCCC--CChh-HHHhhhccccEE
Q 041825 204 SLHKQYADWGVD-FVKHDCAFGDDLDE-------GEIAVVSEVFKGQQNRPIIYSLSPGTS--ATPA-MAQKINGLANMY 272 (391)
Q Consensus 204 ~~~~~~a~wGvd-ylK~D~~~~~~~~~-------~~~~~~~~Al~~~~gr~i~ls~~~~~~--~~p~-~~~~~~~~an~~ 272 (391)
++-.++.+|-.+ +||+=.-|++.-++ +....+.+|..+ +|+.++|.+=++.. ..+. +... +...+
T Consensus 129 digs~L~~WP~ehvVKcLvfyHPdD~~~lr~~Qe~~l~~l~~ac~~-sg~ElLLEvI~p~~~~~~~~~~~~a---i~r~Y 204 (311)
T PF09863_consen 129 DIGSQLIEWPQEHVVKCLVFYHPDDDPELRLEQEAQLRRLYDACRR-SGHELLLEVIPPKDMPVDDDTYARA---IERFY 204 (311)
T ss_pred CHHHHHHhCCcccEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHh-cCcceeEEEecCCCCCCChHHHHHH---HHHHH
Confidence 445678999886 99988666644332 235667888888 99999998854221 1111 1111 11111
Q ss_pred EecCCCCCChhhHHHHHHHHHHHHHhh-hhcccCCCCCCCCCCCC---cccccccCCCCCCCCCCCCCCCHHHHHHHHHH
Q 041825 273 RVTGDDWDSWPDVAAHFSVARDFAAAN-MTGALGLKGKSWPDLDM---LPLGWLTDANSTQGPYRACKLTQDEQKTQITL 348 (391)
Q Consensus 273 Ris~D~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~wnDpDm---l~~G~~~~~~~~~g~~~~~~lt~~E~rt~~tl 348 (391)
.. .|.|.|=.+... ....|.... ++. =+||.+ +++| |+..|.+..-++
T Consensus 205 ~l--GI~PDWWKLep~--s~~~W~~i~~~I~--------~~Dp~crGvVvLG----------------LdAP~e~L~~~F 256 (311)
T PF09863_consen 205 NL--GIKPDWWKLEPL--SAAAWQAIEALIE--------ERDPYCRGVVVLG----------------LDAPEEELAAGF 256 (311)
T ss_pred Hc--CCCCCeeccCCC--CHHHHHHHHHHHH--------HhCCCceeEEEec----------------CCCCHHHHHHHH
Confidence 11 244444322221 122332211 111 147765 3444 556666666677
Q ss_pred HHHhcCCcccccCCC
Q 041825 349 WAMAKSPLMFGGDVR 363 (391)
Q Consensus 349 wa~~~sPL~ig~Dl~ 363 (391)
-+..++|+.-|.=+-
T Consensus 257 ~~Aa~~p~vkGFAVG 271 (311)
T PF09863_consen 257 AAAAGSPLVKGFAVG 271 (311)
T ss_pred HHhhCCCceeeeeec
Confidence 788899999887663
No 195
>TIGR03586 PseI pseudaminic acid synthase.
Probab=22.26 E-value=3e+02 Score=27.46 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCCeE
Q 041825 120 FTEIAKKVHDIGLKF 134 (391)
Q Consensus 120 ~k~lad~ih~~Glk~ 134 (391)
.+.|.++++++|+.|
T Consensus 79 ~~~L~~~~~~~Gi~~ 93 (327)
T TIGR03586 79 HKELFERAKELGLTI 93 (327)
T ss_pred HHHHHHHHHHhCCcE
Confidence 578899999999986
No 196
>PRK06233 hypothetical protein; Provisional
Probab=22.26 E-value=83 Score=31.87 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=27.5
Q ss_pred ccccccCCHHHHHHHHHHHH---HhhccCCceEEEecccccc
Q 041825 44 DAFCWIISEQEFLESADIVA---KRLLPHGYEYVVVDYLWYR 82 (391)
Q Consensus 44 ~~~~~~i~e~~v~~~ad~~~---~~l~~~Gy~~v~IDdgW~~ 82 (391)
+.||.+ .|+.+.+.|+.++ +.|.++|.+||+||+.-..
T Consensus 156 ~~~Y~~-~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~ 196 (372)
T PRK06233 156 PKFYDS-WDDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWA 196 (372)
T ss_pred cccCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHH
Confidence 345544 3666777788764 4789999999999996643
No 197
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=22.11 E-value=1.8e+02 Score=24.50 Aligned_cols=51 Identities=22% Similarity=0.347 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHc
Q 041825 51 SEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDI 130 (391)
Q Consensus 51 ~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~ 130 (391)
|-+........+++.+.+.|++-+++|=| ..+|-+ -++++++.+++.
T Consensus 67 n~~aa~~vG~~la~ra~~~gi~~vvfDrg----------------------------~~~yhG-----rV~a~a~~are~ 113 (117)
T PRK05593 67 NKEAAKKVGKLIAERAKAKGIKQVVFDRG----------------------------GYKYHG-----RVKALADAAREA 113 (117)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEcCC----------------------------CCcccH-----HHHHHHHHHHHh
Confidence 44455566667788889999999999832 012221 499999999999
Q ss_pred CCeE
Q 041825 131 GLKF 134 (391)
Q Consensus 131 Glk~ 134 (391)
||+|
T Consensus 114 Gl~f 117 (117)
T PRK05593 114 GLKF 117 (117)
T ss_pred CCCC
Confidence 9986
No 198
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=22.02 E-value=2e+02 Score=30.24 Aligned_cols=51 Identities=12% Similarity=0.069 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCcEEeecCC-CCCCCCh--HHHH----HHHHHHHhccCCcEEEEeCC
Q 041825 202 LRSLHKQYADWGVDFVKHDCA-FGDDLDE--GEIA----VVSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~~-~~~~~~~--~~~~----~~~~Al~~~~gr~i~ls~~~ 253 (391)
+...+..+..=|+|+||=|-. ....+.+ ++.. ++.+|-++ +|+..+|..+.
T Consensus 178 ~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~e-TG~~k~y~~Ni 235 (468)
T PRK04208 178 YGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAE-TGERKGHYLNV 235 (468)
T ss_pred HHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHh-hCCcceEEEec
Confidence 455566777889999999954 3344443 4444 45555566 99987777654
No 199
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=22.01 E-value=2.1e+02 Score=26.87 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCCeEEEEe
Q 041825 121 TEIAKKVHDIGLKFGIHV 138 (391)
Q Consensus 121 k~lad~ih~~Glk~Giy~ 138 (391)
+.+++.+|++|+++..|+
T Consensus 199 ~~~v~~~~~~g~~v~~WT 216 (249)
T PRK09454 199 EARVAALKAAGLRILVYT 216 (249)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 678999999999998886
No 200
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=21.90 E-value=83 Score=30.68 Aligned_cols=151 Identities=11% Similarity=0.148 Sum_probs=66.8
Q ss_pred eEeeccccccccCCHHHHHHHHHHHHHhhccCCceEEEec-----ccccccccCCcccCCCCccccCCC-CC-ceeCCCC
Q 041825 38 RGWNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVD-----YLWYRKKVKGAHIDSEGIDLIDEW-GR-MVPDPER 110 (391)
Q Consensus 38 mGWnSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~ID-----dgW~~~~~~g~~~~~~~~~~~d~~-G~-~~~d~~k 110 (391)
+| .+....-...+.+++...++. +++.||+.|++- +++......+. .+....|.. .+ -.+|++=
T Consensus 16 lg-dT~W~~~~~~~~~e~~~yL~~----r~~qgFN~iq~~~l~~~~~~~~~n~~~~----~~~~~~~~~~~d~~~~N~~Y 86 (289)
T PF13204_consen 16 LG-DTAWSLFHRLTREEWEQYLDT----RKEQGFNVIQMNVLPQWDGYNTPNRYGF----APFPDEDPGQFDFTRPNPAY 86 (289)
T ss_dssp EE-EE-TTHHHH--HHHHHHHHHH----HHHTT--EEEEES-SSSS-B----TTS-----BS-SSTT------TT----H
T ss_pred hh-HHHHHHhhCCCHHHHHHHHHH----HHHCCCCEEEEEeCCCcccccccccCCC----cCCCCCCccccCCCCCCHHH
Confidence 55 333333345677666666653 566788888763 22222110000 000000100 01 2255555
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCeEEEEeecCcchhhccCCccccccCCCCCCcccCccchhhhccccCCCCccCCCCcee
Q 041825 111 WPSSKGGKGFTEIAKKVHDIGLKFGIHVMKGISTQAVNANTLIYDYDKGGPYMEAGRQWRAQDIAIKEKPCAWMPHGFMA 190 (391)
Q Consensus 111 FP~~~~~~G~k~lad~ih~~Glk~Giy~~pg~~~~a~~~~s~i~~~~~~~~~~~~g~~~~~~di~~~~~~c~~~~~~~~~ 190 (391)
|-. +..+++.+.++||.+.|=. ... |.+.++ .|..+ .
T Consensus 87 F~~------~d~~i~~a~~~Gi~~~lv~--~wg-~~~~~~-------------------------------~Wg~~---~ 123 (289)
T PF13204_consen 87 FDH------LDRRIEKANELGIEAALVP--FWG-CPYVPG-------------------------------TWGFG---P 123 (289)
T ss_dssp HHH------HHHHHHHHHHTT-EEEEES--S-H-HHHH-----------------------------------------T
T ss_pred HHH------HHHHHHHHHHCCCeEEEEE--EEC-Cccccc-------------------------------ccccc---c
Confidence 555 8999999999999998632 210 111100 01100 0
Q ss_pred ecCCcHHHHHHHHHHHHHHHhh-CCcEEee-cCCCCCCCChHHHHHHHHHHHh
Q 041825 191 VNTKLGAGKAFLRSLHKQYADW-GVDFVKH-DCAFGDDLDEGEIAVVSEVFKG 241 (391)
Q Consensus 191 lD~t~p~~~~~~~~~~~~~a~w-GvdylK~-D~~~~~~~~~~~~~~~~~Al~~ 241 (391)
-.++...++.|.+-+++.|++. .|=++-- |. .....+.+.+.+|.+.|++
T Consensus 124 ~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~-~~~~~~~~~w~~~~~~i~~ 175 (289)
T PF13204_consen 124 NIMPPENAERYGRYVVARYGAYPNVIWILGGDY-FDTEKTRADWDAMARGIKE 175 (289)
T ss_dssp TSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS---TTSSHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc-CCCCcCHHHHHHHHHHHHh
Confidence 1223345678889999999887 4544422 33 1122345678888888877
No 201
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=21.82 E-value=2e+02 Score=25.48 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCeEEEEe
Q 041825 120 FTEIAKKVHDIGLKFGIHV 138 (391)
Q Consensus 120 ~k~lad~ih~~Glk~Giy~ 138 (391)
.+.+++.+|+.|+++-+|+
T Consensus 138 ~~~~v~~~~~~g~~v~~wt 156 (179)
T cd08555 138 DTELIASANKLGLLSRIWT 156 (179)
T ss_pred CHHHHHHHHHCCCEEEEEe
Confidence 4788999999999988886
No 202
>PTZ00445 p36-lilke protein; Provisional
Probab=21.66 E-value=2.1e+02 Score=27.00 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeC--CCCCCCCCCCCCHHHHHHHHHHcCC
Q 041825 55 FLESADIVAKRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPD--PERWPSSKGGKGFTEIAKKVHDIGL 132 (391)
Q Consensus 55 v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d--~~kFP~~~~~~G~k~lad~ih~~Gl 132 (391)
-.+.++.+.+.|+..|.+.|.+|= .... . .+=.-|++.++ ..++-. ++...++.+...+++.|+
T Consensus 27 ~~~~~~~~v~~L~~~GIk~Va~D~--DnTl-----I------~~HsgG~~~~~~~~~~~~~-~~tpefk~~~~~l~~~~I 92 (219)
T PTZ00445 27 PHESADKFVDLLNECGIKVIASDF--DLTM-----I------TKHSGGYIDPDNDDIRVLT-SVTPDFKILGKRLKNSNI 92 (219)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecc--hhhh-----h------hhhcccccCCCcchhhhhc-cCCHHHHHHHHHHHHCCC
Confidence 456677777779999999999982 1110 0 00011344442 111110 000149999999999999
Q ss_pred eEEEE
Q 041825 133 KFGIH 137 (391)
Q Consensus 133 k~Giy 137 (391)
++-|=
T Consensus 93 ~v~VV 97 (219)
T PTZ00445 93 KISVV 97 (219)
T ss_pred eEEEE
Confidence 97553
No 203
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=21.39 E-value=2e+02 Score=25.96 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=44.6
Q ss_pred ccCCHHHHHHHHHHHHHhhcc-CCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHH
Q 041825 48 WIISEQEFLESADIVAKRLLP-HGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKK 126 (391)
Q Consensus 48 ~~i~e~~v~~~ad~~~~~l~~-~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ 126 (391)
-.|+++++.+.++++++.++. ..=+.+.|+-++... ..+...+.+|-=. ++==.=.++.
T Consensus 96 i~ls~~~y~~L~~~I~~sf~~~~~g~~~~i~~~y~~~------------------d~Fy~A~G~Y~l~--~TCNtWta~~ 155 (173)
T PF09601_consen 96 IRLSEAQYRRLVAFIRASFQRDADGRPIPIGPGYGPD------------------DAFYEAKGRYSLF--NTCNTWTARA 155 (173)
T ss_pred EEcCHHHHHHHHHHHHHHhccCCCCCeEEeccccCCC------------------CeeEeeccceEee--cCcHHHHHHH
Confidence 368999999999988776543 234566666665442 2233333333210 0001567889
Q ss_pred HHHcCCeEEEEe
Q 041825 127 VHDIGLKFGIHV 138 (391)
Q Consensus 127 ih~~Glk~Giy~ 138 (391)
|++.|+|.++|+
T Consensus 156 L~aaG~~~~~wt 167 (173)
T PF09601_consen 156 LKAAGLPAGLWT 167 (173)
T ss_pred HHHcCCCccccc
Confidence 999999999996
No 204
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=21.25 E-value=87 Score=25.48 Aligned_cols=51 Identities=22% Similarity=0.159 Sum_probs=31.9
Q ss_pred HhhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHc
Q 041825 64 KRLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDI 130 (391)
Q Consensus 64 ~~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~ 130 (391)
+-++.+|+++++.=|.=+-. ..++..|+...+...+-+ ..|+.++.+|+++
T Consensus 39 ~a~~~LGl~~~v~~dk~yPr------------~~w~~~g~vive~~~~K~----~~lk~ia~~lr~~ 89 (93)
T COG1400 39 EALRELGLKPKVERDKKYPR------------LWWEISGRVIVESNGKKS----KLLKAIAAKLREK 89 (93)
T ss_pred HHHHHcCCCeeechhhcCCC------------chhhhCceEEEecCccHh----HHHHHHHHHHHHh
Confidence 34568999997543322211 124456888877665443 3689999988875
No 205
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=21.21 E-value=76 Score=27.67 Aligned_cols=16 Identities=31% Similarity=0.081 Sum_probs=11.8
Q ss_pred CchhHHHHHHHHHHHh
Q 041825 1 MKFFALSILCFFSSLL 16 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (391)
||++.+++++++++++
T Consensus 1 M~~~~~~~~~~~~~~~ 16 (162)
T PF12276_consen 1 MKRRLLLALALALLAL 16 (162)
T ss_pred CchHHHHHHHHHHHHh
Confidence 7888887777776655
No 206
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=21.14 E-value=4.4e+02 Score=26.69 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhCCcEEeecCCC
Q 041825 201 FLRSLHKQYADWGVDFVKHDCAF 223 (391)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~~~ 223 (391)
.+..-++.-++.|-|+||..++.
T Consensus 218 ~Ia~AaRiaaELGADIVKv~yp~ 240 (348)
T PRK09250 218 LTGQANHLAATIGADIIKQKLPT 240 (348)
T ss_pred HHHHHHHHHHHHcCCEEEecCCC
Confidence 44444566689999999999974
No 207
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=21.10 E-value=2.5e+02 Score=28.37 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=25.0
Q ss_pred HHHHHhhCCcEEeecCCCCCCCChHHHHHHHHHHHhccCCcEEEEeCC
Q 041825 206 HKQYADWGVDFVKHDCAFGDDLDEGEIAVVSEVFKGQQNRPIIYSLSP 253 (391)
Q Consensus 206 ~~~~a~wGvdylK~D~~~~~~~~~~~~~~~~~Al~~~~gr~i~ls~~~ 253 (391)
++.|+++|++.|.+|+- ++.++...|.+ .|-+|.++.|.
T Consensus 82 l~~~~~lGi~~lRlD~G----f~~~~ia~ls~-----ng~~I~LNASt 120 (357)
T PF05913_consen 82 LSFFKELGIDGLRLDYG----FSGEEIAKLSK-----NGIKIELNAST 120 (357)
T ss_dssp THHHHHHT-SEEEESSS-----SCHHHHHHTT-----T-SEEEEETTT
T ss_pred HHHHHHcCCCEEEECCC----CCHHHHHHHHh-----CCCEEEEECCC
Confidence 36689999999999984 34455555542 25667777664
No 208
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.09 E-value=2.2e+02 Score=26.72 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.4
Q ss_pred HHHHHhhCCcEEeecC
Q 041825 206 HKQYADWGVDFVKHDC 221 (391)
Q Consensus 206 ~~~~a~wGvdylK~D~ 221 (391)
++.+.++|||.|--|+
T Consensus 232 ~~~l~~~Gvd~IiTD~ 247 (256)
T cd08601 232 MIRLINWGVDGMFTNY 247 (256)
T ss_pred HHHHHhcCCCEEEeCC
Confidence 4667889999999887
No 209
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=20.78 E-value=2.2e+02 Score=26.21 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.1
Q ss_pred HHHHHhhCCcEEeecC
Q 041825 206 HKQYADWGVDFVKHDC 221 (391)
Q Consensus 206 ~~~~a~wGvdylK~D~ 221 (391)
++.+.++|||.|--|+
T Consensus 214 ~~~~~~~GVdgi~TD~ 229 (230)
T cd08563 214 MKRLKDLGVDGIITNY 229 (230)
T ss_pred HHHHHHCCCCEEeCCC
Confidence 5677889999998775
No 210
>PRK10455 periplasmic protein; Reviewed
Probab=20.76 E-value=80 Score=28.20 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=9.0
Q ss_pred CchhHHHHHHHHHHHhhc
Q 041825 1 MKFFALSILCFFSSLLLH 18 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (391)
||-++.+++|-++++|+.
T Consensus 1 mrk~t~~~~as~l~~g~~ 18 (161)
T PRK10455 1 MRKLTALFVASTLALGAA 18 (161)
T ss_pred ChhHHHHHHHHHHHHHHH
Confidence 555555544444444544
No 211
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=20.72 E-value=5e+02 Score=25.39 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=33.5
Q ss_pred hhccCCceEEEecccccccccCCcccCCCCccccCCCCCceeCCCCCCCCCCCCCHHHHHHHHHHcCCeEEEEeecC
Q 041825 65 RLLPHGYEYVVVDYLWYRKKVKGAHIDSEGIDLIDEWGRMVPDPERWPSSKGGKGFTEIAKKVHDIGLKFGIHVMKG 141 (391)
Q Consensus 65 ~l~~~Gy~~v~IDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~G~k~lad~ih~~Glk~Giy~~pg 141 (391)
.+.++|.+.|+|+|.|....- .+.-....--.|. ++.+++.+|++ .+.||+...
T Consensus 188 ~~~~aGad~I~i~d~~a~~~~---------------lsp~~f~ef~~p~------~~~i~~~i~~~--~~ilH~cG~ 241 (339)
T PRK06252 188 AQLEAGADVICIADPSASPEL---------------LGPKMFEEFVLPY------LNKIIDEVKGL--PTILHICGD 241 (339)
T ss_pred HHHHcCCCEEEeCCCCccccc---------------cCHHHHHHHHHHH------HHHHHHHhccC--CcEEEECCC
Confidence 467789999999998864210 0000111111254 89999999987 677777543
No 212
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=20.54 E-value=2.1e+02 Score=28.36 Aligned_cols=18 Identities=17% Similarity=0.006 Sum_probs=15.0
Q ss_pred HHHHHHhhCCcEEeecCC
Q 041825 205 LHKQYADWGVDFVKHDCA 222 (391)
Q Consensus 205 ~~~~~a~wGvdylK~D~~ 222 (391)
.++.+.+||||.|--|..
T Consensus 258 ~~~~l~~~GVDgIiTD~P 275 (316)
T cd08610 258 LFSLAWCSGIHSVTTNNI 275 (316)
T ss_pred HHHHHHhCCcCEEEeCCH
Confidence 357788999999999983
No 213
>PRK15346 outer membrane secretin SsaC; Provisional
Probab=20.43 E-value=95 Score=32.80 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=21.0
Q ss_pred eeccccccccCCHHHHHHHHHHHHHhhccCCceEEEeccc
Q 041825 40 WNSYDAFCWIISEQEFLESADIVAKRLLPHGYEYVVVDYL 79 (391)
Q Consensus 40 WnSW~~~~~~i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdg 79 (391)
|.+ ..|.-+.....|.+.++.+++... .-|++|+.
T Consensus 26 w~~-~~~~~~~~~~di~~vl~~~a~~~g----~nivv~~~ 60 (499)
T PRK15346 26 WQG-NPFFIYSRGMPLAEVLHDLGANYG----IPVVISPE 60 (499)
T ss_pred CCC-CCEEEEECCCcHHHHHHHHHHHhC----CCEEECcc
Confidence 655 334445566677888887765332 35777764
No 214
>PLN02433 uroporphyrinogen decarboxylase
Probab=20.38 E-value=2.9e+02 Score=27.39 Aligned_cols=53 Identities=15% Similarity=-0.018 Sum_probs=30.5
Q ss_pred CcHHHHHHHHHHHHHHHhhCCcEEeecCCC-CCCCChHHHHHHHHHHHhccCCcEEE
Q 041825 194 KLGAGKAFLRSLHKQYADWGVDFVKHDCAF-GDDLDEGEIAVVSEVFKGQQNRPIIY 249 (391)
Q Consensus 194 t~p~~~~~~~~~~~~~a~wGvdylK~D~~~-~~~~~~~~~~~~~~Al~~~~gr~i~l 249 (391)
|..++++..+..++....=| ||=--.|. .....+++.++|-+|+++ .+++|++
T Consensus 290 t~e~i~~~v~~~i~~~~~~g--~Il~~Gc~i~~~tp~eNi~a~v~av~~-~~~~~~~ 343 (345)
T PLN02433 290 SKEAIEKEVRDVVKKAGPQG--HILNLGHGVLVGTPEENVAHFFDVARE-LRYEMIA 343 (345)
T ss_pred CHHHHHHHHHHHHHHcCCCC--eEEecCCCCCCCCCHHHHHHHHHHHHH-hChhhhc
Confidence 44446555555544432222 44333343 234456788888888888 8887764
No 215
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=20.23 E-value=77 Score=27.06 Aligned_cols=62 Identities=23% Similarity=0.263 Sum_probs=42.2
Q ss_pred ccccccccccccCCCCCCceEeecccccccc------------CCHHHHHHHHHHHHHhhccCCceEEEecccccccc
Q 041825 19 RIPSANAADKETEHAALPPRGWNSYDAFCWI------------ISEQEFLESADIVAKRLLPHGYEYVVVDYLWYRKK 84 (391)
Q Consensus 19 ~~~~~~~~~~~~~~~~~pPmGWnSW~~~~~~------------i~e~~v~~~ad~~~~~l~~~Gy~~v~IDdgW~~~~ 84 (391)
..+..+......|....||||-+||-+|... +.|++|-...+ .|++.|.+..-|=.-|-.++
T Consensus 22 ~~~R~dl~vt~~G~~~~~~~~l~~~~aF~~~~~G~A~~~Gd~vll~~EV~pvi~----aL~~~GI~vtAlHNH~l~e~ 95 (123)
T PF07485_consen 22 TIPRNDLKVTIDGRRLPPPMGLTSWIAFEPDGDGKAMVMGDFVLLEDEVNPVIS----ALRKNGIEVTALHNHWLFEQ 95 (123)
T ss_pred EEccCCceEEECCEEcCCccccceeEEEEECCCCcEEEeecEEecHHHHHHHHH----HHHHCCceEEEEecccccCC
Confidence 3344333333357788899999999877542 56777777776 46778888888877776543
No 216
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=20.21 E-value=84 Score=27.09 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCeEEEE
Q 041825 120 FTEIAKKVHDIGLKFGIH 137 (391)
Q Consensus 120 ~k~lad~ih~~Glk~Giy 137 (391)
++.+.+.||..|.++|||
T Consensus 118 ~~g~~~~l~~~gY~~GvY 135 (136)
T PF08924_consen 118 FRGWNSALGASGYRPGVY 135 (136)
T ss_dssp HHHHHHHHGGGT-EEEEE
T ss_pred HHHHHHHHhhCCCcceee
Confidence 899999999999999999
No 217
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=20.11 E-value=5.9e+02 Score=24.23 Aligned_cols=22 Identities=5% Similarity=0.406 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHcCCeEEEEeec
Q 041825 119 GFTEIAKKVHDIGLKFGIHVMK 140 (391)
Q Consensus 119 G~k~lad~ih~~Glk~Giy~~p 140 (391)
+|+++++.|+..|+++.|+++|
T Consensus 112 ~l~~~v~~L~~~GirVSLFiD~ 133 (243)
T COG0854 112 KLRDAVRRLKNAGIRVSLFIDP 133 (243)
T ss_pred hHHHHHHHHHhCCCeEEEEeCC
Confidence 6999999999999999999875
No 218
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=20.10 E-value=2.4e+02 Score=25.72 Aligned_cols=16 Identities=31% Similarity=0.638 Sum_probs=13.0
Q ss_pred HHHHHhhCCcEEeecC
Q 041825 206 HKQYADWGVDFVKHDC 221 (391)
Q Consensus 206 ~~~~a~wGvdylK~D~ 221 (391)
++.+.++|||+|--|+
T Consensus 213 ~~~~~~~gVdgiiTD~ 228 (229)
T cd08562 213 AAELLEWGVDAIFTDR 228 (229)
T ss_pred HHHHHHCCCCEEEcCC
Confidence 5677889999998775
Done!