Query 041827
Match_columns 138
No_of_seqs 147 out of 1050
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 11:03:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03151 TPT: Triose-phosphate 99.9 2.9E-25 6.3E-30 153.0 14.0 132 1-132 7-153 (153)
2 KOG1441 Glucose-6-phosphate/ph 99.9 1.8E-25 3.9E-30 169.9 6.1 136 1-138 170-313 (316)
3 PTZ00343 triose or hexose phos 99.8 2.5E-19 5.5E-24 138.9 15.7 133 2-134 202-350 (350)
4 TIGR00817 tpt Tpt phosphate/ph 99.8 1.4E-18 3E-23 132.0 13.3 137 2-138 153-299 (302)
5 PF08449 UAA: UAA transporter 99.8 2.1E-17 4.6E-22 125.8 15.7 137 2-138 162-303 (303)
6 KOG1443 Predicted integral mem 99.6 2.1E-15 4.6E-20 113.0 10.3 132 1-132 171-315 (349)
7 KOG1581 UDP-galactose transpor 99.5 1E-13 2.3E-18 103.9 10.5 131 4-136 182-317 (327)
8 KOG1444 Nucleotide-sugar trans 99.5 9.9E-14 2.2E-18 104.7 9.0 133 3-138 166-306 (314)
9 KOG1442 GDP-fucose transporter 99.4 1.5E-13 3.2E-18 102.0 4.0 134 2-137 193-332 (347)
10 PLN00411 nodulin MtN21 family 99.4 1.2E-11 2.6E-16 96.4 13.0 133 2-136 197-332 (358)
11 KOG1580 UDP-galactose transpor 99.4 6.3E-12 1.4E-16 91.9 9.1 125 5-131 183-312 (337)
12 PF00892 EamA: EamA-like trans 99.3 1.6E-11 3.5E-16 80.8 9.5 121 4-131 1-125 (126)
13 PRK10532 threonine and homoser 99.3 9.1E-11 2E-15 89.0 13.5 128 2-135 156-284 (293)
14 TIGR00688 rarD rarD protein. T 99.3 2.6E-10 5.6E-15 84.7 15.2 127 2-130 10-140 (256)
15 PLN00411 nodulin MtN21 family 99.2 6.4E-10 1.4E-14 86.8 13.6 123 4-131 23-155 (358)
16 KOG1583 UDP-N-acetylglucosamin 99.2 1.7E-10 3.8E-15 85.8 9.2 130 2-136 172-318 (330)
17 PRK15430 putative chlorampheni 99.1 3.6E-09 7.7E-14 80.4 15.3 126 2-131 16-144 (296)
18 COG5070 VRG4 Nucleotide-sugar 99.1 7.5E-10 1.6E-14 80.5 10.3 131 4-136 165-300 (309)
19 TIGR00950 2A78 Carboxylate/Ami 99.1 1.9E-09 4.1E-14 79.8 12.6 121 2-127 136-259 (260)
20 PRK11272 putative DMT superfam 99.1 2.4E-09 5.2E-14 81.1 13.3 131 2-136 158-289 (292)
21 PRK11453 O-acetylserine/cystei 99.1 9.9E-09 2.1E-13 78.0 15.2 131 2-133 151-288 (299)
22 PRK11689 aromatic amino acid e 99.1 3.5E-09 7.6E-14 80.4 12.0 122 2-131 164-286 (295)
23 PF06027 DUF914: Eukaryotic pr 99.0 1.2E-08 2.6E-13 78.8 11.3 129 2-134 176-307 (334)
24 PRK11689 aromatic amino acid e 99.0 1.8E-08 3.9E-13 76.5 12.0 117 2-130 12-135 (295)
25 TIGR00950 2A78 Carboxylate/Ami 99.0 2.3E-08 5E-13 74.0 12.3 113 6-131 1-118 (260)
26 TIGR03340 phn_DUF6 phosphonate 98.9 2.3E-08 4.9E-13 75.4 11.8 123 2-131 9-134 (281)
27 PRK11272 putative DMT superfam 98.9 7.5E-08 1.6E-12 73.0 14.1 119 3-131 17-140 (292)
28 PRK15430 putative chlorampheni 98.9 5.6E-08 1.2E-12 73.8 12.1 122 2-131 157-284 (296)
29 TIGR00803 nst UDP-galactose tr 98.8 1.2E-08 2.7E-13 74.3 7.1 125 2-130 93-222 (222)
30 PRK11453 O-acetylserine/cystei 98.8 1.8E-07 3.9E-12 71.1 12.5 115 2-131 12-131 (299)
31 COG2510 Predicted membrane pro 98.8 2.8E-08 6E-13 66.3 6.9 124 2-130 11-137 (140)
32 TIGR03340 phn_DUF6 phosphonate 98.7 5E-08 1.1E-12 73.5 8.2 126 2-129 152-280 (281)
33 KOG1582 UDP-galactose transpor 98.7 6.9E-08 1.5E-12 72.2 8.1 132 1-134 197-334 (367)
34 PTZ00343 triose or hexose phos 98.7 8.6E-07 1.9E-11 69.0 13.3 122 5-131 60-185 (350)
35 TIGR00817 tpt Tpt phosphate/ph 98.7 8.5E-07 1.8E-11 67.4 12.5 118 6-130 14-135 (302)
36 PF13536 EmrE: Multidrug resis 98.6 2.7E-06 5.8E-11 55.9 12.2 103 28-135 3-109 (113)
37 COG0697 RhaT Permeases of the 98.4 1.2E-05 2.5E-10 59.7 13.4 123 2-135 162-290 (292)
38 COG2962 RarD Predicted permeas 98.3 6.2E-05 1.3E-09 56.8 14.3 125 3-132 16-144 (293)
39 COG5006 rhtA Threonine/homoser 98.2 1.8E-05 3.8E-10 58.8 10.2 122 2-131 156-281 (292)
40 PF04142 Nuc_sug_transp: Nucle 97.9 9.6E-05 2.1E-09 55.0 9.2 120 2-122 122-243 (244)
41 COG0697 RhaT Permeases of the 97.9 0.00048 1E-08 51.0 12.4 123 3-133 16-144 (292)
42 KOG2234 Predicted UDP-galactos 97.9 0.00026 5.7E-09 54.8 11.1 132 2-136 191-326 (345)
43 PF04142 Nuc_sug_transp: Nucle 97.9 0.00012 2.6E-09 54.5 8.5 72 63-134 17-91 (244)
44 PF08449 UAA: UAA transporter 97.9 0.00057 1.2E-08 52.1 12.3 120 7-135 13-139 (303)
45 TIGR00776 RhaT RhaT L-rhamnose 97.8 0.00072 1.5E-08 51.4 11.8 118 2-134 160-290 (290)
46 PRK10532 threonine and homoser 97.8 0.00083 1.8E-08 51.0 12.1 113 2-130 20-135 (293)
47 PRK10650 multidrug efflux syst 97.7 0.0029 6.3E-08 41.4 12.3 46 86-131 62-107 (109)
48 PF06027 DUF914: Eukaryotic pr 97.7 0.00093 2E-08 51.9 11.6 70 64-133 80-152 (334)
49 PRK02971 4-amino-4-deoxy-L-ara 97.7 0.00041 8.8E-09 46.8 8.3 41 97-137 85-127 (129)
50 PRK15051 4-amino-4-deoxy-L-ara 97.6 0.0017 3.6E-08 42.6 10.4 38 93-130 70-107 (111)
51 TIGR00776 RhaT RhaT L-rhamnose 97.6 0.0014 3.1E-08 49.7 10.6 122 2-134 9-138 (290)
52 PRK11431 multidrug efflux syst 97.5 0.004 8.6E-08 40.5 10.5 50 84-133 54-103 (105)
53 PRK09541 emrE multidrug efflux 97.4 0.0062 1.3E-07 39.9 10.8 48 87-134 58-105 (110)
54 COG2962 RarD Predicted permeas 97.4 0.015 3.3E-07 44.1 14.0 122 4-135 158-286 (293)
55 KOG3912 Predicted integral mem 97.3 0.0034 7.4E-08 47.7 9.2 129 3-133 185-335 (372)
56 PRK10452 multidrug efflux syst 97.3 0.0095 2.1E-07 39.7 10.4 47 87-133 58-104 (120)
57 COG2076 EmrE Membrane transpor 97.1 0.022 4.7E-07 37.1 10.5 48 86-133 57-104 (106)
58 KOG2234 Predicted UDP-galactos 97.0 0.051 1.1E-06 42.4 13.1 113 19-131 44-163 (345)
59 PF04657 DUF606: Protein of un 96.7 0.057 1.2E-06 36.8 10.4 116 6-128 13-137 (138)
60 KOG4510 Permease of the drug/m 96.6 0.00019 4E-09 54.0 -2.4 115 7-130 50-167 (346)
61 PF00893 Multi_Drug_Res: Small 96.2 0.07 1.5E-06 33.7 8.1 37 86-122 56-92 (93)
62 KOG2765 Predicted membrane pro 96.2 0.023 5E-07 44.7 6.9 128 2-133 255-391 (416)
63 KOG2766 Predicted membrane pro 95.2 0.062 1.3E-06 40.5 5.5 120 5-132 177-299 (336)
64 KOG2765 Predicted membrane pro 94.9 0.04 8.6E-07 43.4 4.0 74 62-135 158-234 (416)
65 PF05653 Mg_trans_NIPA: Magnes 93.8 0.8 1.7E-05 35.2 9.1 67 63-129 53-119 (300)
66 PRK13499 rhamnose-proton sympo 92.8 3.9 8.5E-05 32.1 11.6 126 2-132 15-153 (345)
67 COG3238 Uncharacterized protei 92.7 2.3 5.1E-05 29.4 10.3 123 6-134 17-148 (150)
68 TIGR00688 rarD rarD protein. T 92.6 2 4.3E-05 31.6 9.5 25 83-107 231-255 (256)
69 PF06800 Sugar_transport: Suga 92.4 3.8 8.3E-05 31.1 10.8 70 63-136 45-126 (269)
70 KOG4510 Permease of the drug/m 90.8 0.085 1.8E-06 40.0 0.5 122 4-134 201-327 (346)
71 KOG3912 Predicted integral mem 89.3 1.2 2.7E-05 34.2 5.5 48 83-130 109-156 (372)
72 PF10639 UPF0546: Uncharacteri 87.3 0.65 1.4E-05 30.6 2.6 38 91-128 73-110 (113)
73 KOG1581 UDP-galactose transpor 86.2 3.9 8.5E-05 31.6 6.6 121 8-134 28-157 (327)
74 PF02694 UPF0060: Uncharacteri 82.2 11 0.00025 24.5 8.0 94 37-130 7-101 (107)
75 PF06800 Sugar_transport: Suga 81.2 22 0.00047 27.1 10.1 53 76-128 208-267 (269)
76 KOG4314 Predicted carbohydrate 79.0 0.85 1.9E-05 33.3 0.7 51 83-133 76-126 (290)
77 PF10855 DUF2648: Protein of u 76.8 1.3 2.7E-05 22.3 0.7 19 120-138 6-24 (33)
78 PRK02237 hypothetical protein; 75.9 19 0.00042 23.5 9.6 43 88-130 61-103 (109)
79 PF04342 DUF486: Protein of un 75.5 3.2 6.9E-05 27.0 2.5 28 101-128 77-104 (108)
80 PF07857 DUF1632: CEO family ( 74.3 7.3 0.00016 29.3 4.6 26 112-137 114-139 (254)
81 PF05653 Mg_trans_NIPA: Magnes 73.2 14 0.00031 28.3 6.1 50 83-136 241-296 (300)
82 KOG2922 Uncharacterized conser 70.6 3.5 7.5E-05 32.1 2.1 67 63-129 67-133 (335)
83 KOG1580 UDP-galactose transpor 65.8 3.2 7E-05 31.2 1.1 44 90-133 115-158 (337)
84 PF15055 DUF4536: Domain of un 64.1 5.2 0.00011 22.1 1.4 23 116-138 7-29 (47)
85 COG3169 Uncharacterized protei 63.5 14 0.00031 23.8 3.5 29 101-129 84-112 (116)
86 KOG1441 Glucose-6-phosphate/ph 63.4 70 0.0015 24.9 8.6 56 76-132 100-177 (316)
87 PF07444 Ycf66_N: Ycf66 protei 63.2 9.2 0.0002 23.8 2.6 26 111-136 4-29 (84)
88 KOG2766 Predicted membrane pro 63.0 1.3 2.8E-05 33.6 -1.4 47 83-129 101-147 (336)
89 cd01324 cbb3_Oxidase_CcoQ Cyto 58.2 10 0.00022 20.9 2.0 21 117-137 16-36 (48)
90 PF05545 FixQ: Cbb3-type cytoc 56.3 11 0.00023 20.7 1.9 20 117-136 15-34 (49)
91 PF05961 Chordopox_A13L: Chord 55.5 14 0.00031 21.9 2.4 20 116-135 6-25 (68)
92 COG3296 Uncharacterized protei 49.1 64 0.0014 21.9 5.0 32 97-128 76-107 (143)
93 TIGR00803 nst UDP-galactose tr 48.7 24 0.00053 25.3 3.3 45 91-135 9-53 (222)
94 PHA03049 IMV membrane protein; 45.6 25 0.00055 20.8 2.4 20 116-135 6-25 (68)
95 KOG4812 Golgi-associated prote 42.1 1.5E+02 0.0032 22.4 6.6 19 64-82 161-179 (262)
96 PF11346 DUF3149: Protein of u 38.4 44 0.00094 17.9 2.4 27 108-134 7-34 (42)
97 PF11431 Transport_MerF: Membr 37.4 48 0.001 18.2 2.5 41 97-137 2-44 (46)
98 PF14981 FAM165: FAM165 family 35.9 29 0.00062 19.1 1.5 17 119-135 19-35 (51)
99 TIGR01167 LPXTG_anchor LPXTG-m 35.7 38 0.00081 16.6 1.9 14 112-125 10-23 (34)
100 KOG2922 Uncharacterized conser 35.6 72 0.0016 25.0 4.1 52 83-134 251-308 (335)
101 KOG4314 Predicted carbohydrate 34.5 1.9E+02 0.0041 21.4 9.2 123 2-130 143-274 (290)
102 COG0342 SecD Preprotein transl 32.8 1.9E+02 0.0042 24.1 6.4 62 63-125 342-406 (506)
103 KOG1583 UDP-N-acetylglucosamin 32.7 28 0.0006 26.9 1.5 48 89-136 94-141 (330)
104 PF12805 FUSC-like: FUSC-like 28.7 2.5E+02 0.0055 21.0 7.5 20 113-132 68-87 (284)
105 COG4120 ABC-type uncharacteriz 27.6 2.9E+02 0.0062 21.3 6.2 68 61-133 182-252 (293)
106 COG4736 CcoQ Cbb3-type cytochr 26.6 61 0.0013 18.8 1.9 20 117-136 15-34 (60)
107 KOG1444 Nucleotide-sugar trans 25.6 3.3E+02 0.0072 21.3 10.8 122 4-131 22-148 (314)
108 PRK11562 nitrite transporter N 24.1 55 0.0012 24.8 1.8 26 111-136 228-253 (268)
109 COG2116 FocA Formate/nitrite f 24.0 3.3E+02 0.0071 20.7 7.7 26 111-136 236-261 (265)
110 PF01102 Glycophorin_A: Glycop 23.8 90 0.0019 20.8 2.5 12 127-138 83-94 (122)
111 KOG4782 Predicted membrane pro 22.7 41 0.00088 21.4 0.7 22 109-133 58-79 (108)
112 PF15061 DUF4538: Domain of un 22.4 85 0.0018 18.1 1.9 18 115-132 8-25 (58)
113 PRK12437 prolipoprotein diacyl 21.2 95 0.0021 23.4 2.6 22 112-133 235-256 (269)
114 PF08552 Kei1: Inositolphospho 21.0 3.2E+02 0.007 19.6 8.8 36 6-41 26-61 (189)
115 PRK02935 hypothetical protein; 20.3 2.6E+02 0.0057 18.2 4.1 12 83-94 34-45 (110)
No 1
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.93 E-value=2.9e-25 Score=152.97 Aligned_cols=132 Identities=29% Similarity=0.456 Sum_probs=117.7
Q ss_pred CchHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhh-----hhhHHHHHHHH
Q 041827 1 PDIPAWALRTVLQGILLS-------KVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAK-----QDVEFLWYLIF 68 (138)
Q Consensus 1 ~a~~~~a~~~v~~k~~l~-------~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~-----~~~~~~~~~~~ 68 (138)
+|+++.|+|++++|++++ +.||+++++|+++.++++++|.++..|+++..+...... .++..+..++.
T Consensus 7 ~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (153)
T PF03151_consen 7 ASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLIL 86 (153)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHH
Confidence 378999999999999986 479999999999999999999999999876443332221 14567888999
Q ss_pred HHHHHHHHHHHHHH---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhh
Q 041827 69 NSSLAYFVKLTNFL---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKE 132 (138)
Q Consensus 69 ~~~~~~~~n~~~f~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~ 132 (138)
+|++++.+|.+.|. ++||+|++|.+++|++++++.|+++|||++|+.|+.|+++++.|+++|++
T Consensus 87 ~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 87 SGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 99999999999999 99999999999999999999999999999999999999999999999985
No 2
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.92 E-value=1.8e-25 Score=169.90 Aligned_cols=136 Identities=40% Similarity=0.560 Sum_probs=115.1
Q ss_pred CchHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHH-HHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 041827 1 PDIPAWALRTVLQGILLS----KVNSMNLLMYMAPVAAIFLI-PAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYF 75 (138)
Q Consensus 1 ~a~~~~a~~~v~~k~~l~----~~~~~~l~~~~~~~~~~~l~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (138)
++++.+++|++++|++++ ++|++++++|++|++.+.++ |+....|++.. ..+.....+...+..+ ++++++|+
T Consensus 170 ~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~sv~~f~ 247 (316)
T KOG1441|consen 170 ISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVTFLILL-LNSVLAFL 247 (316)
T ss_pred HHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchhhHHHH-HHHHHHHH
Confidence 367899999999999995 69999999999999999999 88777777654 2111111222234444 44499999
Q ss_pred HHHHHHH---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhhhcC
Q 041827 76 VKLTNFL---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKKQSK 138 (138)
Q Consensus 76 ~n~~~f~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~~~k 138 (138)
+|++.|. +|||+|++|.|++|+++++++|+++|+||+|+.|.+|++++++|+++|++.|.|+|
T Consensus 248 ~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~ 313 (316)
T KOG1441|consen 248 LNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEK 313 (316)
T ss_pred HHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999 99999999999999999999999999999999999999999999999999999865
No 3
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.83 E-value=2.5e-19 Score=138.93 Aligned_cols=133 Identities=20% Similarity=0.309 Sum_probs=112.2
Q ss_pred chHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHh----hh--hhhHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLSK-------VNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIAL----AK--QDVEFLWYLIF 68 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~-------~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~----~~--~~~~~~~~~~~ 68 (138)
|++++++|+++.|+.+++ +++.++..+..+++.++++|+....|+......+.. .. .+...++.++.
T Consensus 202 s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 281 (350)
T PTZ00343 202 SNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFF 281 (350)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHH
Confidence 678999999999999973 678889999999999999999877886443332211 11 12334566777
Q ss_pred HHHHHHHHHHHHHH---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhh
Q 041827 69 NSSLAYFVKLTNFL---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAK 134 (138)
Q Consensus 69 ~~~~~~~~n~~~f~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k 134 (138)
+++.++++|.+.|+ ++||+|+++.+++||+++++.|++++||++|+.|++|.++++.|+++|++.|
T Consensus 282 s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 282 SGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 88888889999999 9999999999999999999999999999999999999999999999999875
No 4
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.80 E-value=1.4e-18 Score=131.96 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=108.9
Q ss_pred chHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHH-HHHhh--hhh-hHHHHHHHHHHHHH-H
Q 041827 2 DIPAWALRTVLQGILLS--KVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGI-TIALA--KQD-VEFLWYLIFNSSLA-Y 74 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~--~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~-~~~~~--~~~-~~~~~~~~~~~~~~-~ 74 (138)
|+++++++++++|+.++ ++||.++..|+.+.+.+.++|.....|+.+... .+... ... ...+...+..+..+ +
T Consensus 153 a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (302)
T TIGR00817 153 SNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFH 232 (302)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 67899999999999998 899999999999999999999987777543221 11110 011 11233344444433 4
Q ss_pred HHHHHHHH---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhhhcC
Q 041827 75 FVKLTNFL---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKKQSK 138 (138)
Q Consensus 75 ~~n~~~f~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~~~k 138 (138)
.+|...|. ++||.++++.+.+||++++++|++++||++|+.|++|.++++.|+++|++.|+|+|
T Consensus 233 ~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~ 299 (302)
T TIGR00817 233 FYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKP 299 (302)
T ss_pred HHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCc
Confidence 47866666 99999999999999999999999999999999999999999999999999988764
No 5
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.77 E-value=2.1e-17 Score=125.81 Aligned_cols=137 Identities=18% Similarity=0.247 Sum_probs=118.4
Q ss_pred chHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLS--KVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLT 79 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~--~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 79 (138)
+.+++|+.++++|++++ +.++.++++|.+.++.+..++.....+..+..+..+....++..+..+++.++.++..+..
T Consensus 162 sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~ 241 (303)
T PF08449_consen 162 SLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFF 241 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999998 7899999999999999998888766332233344444445666788888899999887766
Q ss_pred HHH---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhhhcC
Q 041827 80 NFL---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKKQSK 138 (138)
Q Consensus 80 ~f~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~~~k 138 (138)
.+. ++||++.+++.++|+.+++++|+++||+++++.|+.|+++++.|..+|++.|+|+|
T Consensus 242 i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 242 IFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 666 99999999999999999999999999999999999999999999999999999987
No 6
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.64 E-value=2.1e-15 Score=113.01 Aligned_cols=132 Identities=20% Similarity=0.336 Sum_probs=113.6
Q ss_pred CchHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhh-hhh----hHHHHHHHHHH
Q 041827 1 PDIPAWALRTVLQGILLS-----KVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALA-KQD----VEFLWYLIFNS 70 (138)
Q Consensus 1 ~a~~~~a~~~v~~k~~l~-----~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~-~~~----~~~~~~~~~~~ 70 (138)
+|+++.++||.++|.+++ +-+|...+++.+|...+.++|..+..||+......... ..+ ......+.+.|
T Consensus 171 ~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g 250 (349)
T KOG1443|consen 171 AASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGG 250 (349)
T ss_pred HHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHH
Confidence 478999999999999998 46799999999999999999999999997543222211 111 23455678899
Q ss_pred HHHHHHHHHHHH---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhh
Q 041827 71 SLAYFVKLTNFL---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKE 132 (138)
Q Consensus 71 ~~~~~~n~~~f~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~ 132 (138)
.++|+.-.++|. +||.+|.+|+|..|++++++++..+.+|+++..|+.|..++..|+..|.+
T Consensus 251 ~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 251 LLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 999999999999 99999999999999999999999999999999999999999999999944
No 7
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.53 E-value=1e-13 Score=103.86 Aligned_cols=131 Identities=14% Similarity=0.166 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041827 4 PAWALRTVLQGILLS--KVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNF 81 (138)
Q Consensus 4 ~~~a~~~v~~k~~l~--~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f 81 (138)
++|++.+..|+++.+ ++++++++++++.++++..... +.+..++.+..+..+.||..++.+++-+.+|-..+.+.|
T Consensus 182 ~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~--li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~ 259 (327)
T KOG1581|consen 182 LFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY--LILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIF 259 (327)
T ss_pred HHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh--hhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheeh
Confidence 579999999999998 8999999999999999887776 445455666677778889999999999999999888888
Q ss_pred H---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhhh
Q 041827 82 L---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKKQ 136 (138)
Q Consensus 82 ~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~~ 136 (138)
+ +-+|++...+...|+.+.+++|.+.||+|+++.|+.|..+++.|..+-.+.|.|
T Consensus 260 ~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 260 YTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 8 899999999999999999999999999999999999999999999987766654
No 8
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=9.9e-14 Score=104.66 Aligned_cols=133 Identities=16% Similarity=0.134 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHH
Q 041827 3 IPAWALRTVLQGILLS--KVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALA--KQDVEFLWYLIFNSSLAYFVKL 78 (138)
Q Consensus 3 ~~~~a~~~v~~k~~l~--~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~n~ 78 (138)
++..+...+..|+-.+ +.+.+++++|++..+.+.+.....++|+-+ +..... ..+..++..+.++|++||..|+
T Consensus 166 ~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~--~l~~~~~~~~~~~~~~~~~lScv~gf~isy 243 (314)
T KOG1444|consen 166 CLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELD--ALSLNFDNWSDSSVLVVMLLSCVMGFGISY 243 (314)
T ss_pred HHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchH--HHHhhcccccchhHHHHHHHHHHHHHHHHH
Confidence 5566777788888877 789999999999999988888877665422 111111 1234567889999999999999
Q ss_pred HHHH---hhhhhHHhhhhhhhhHHHHHhHHHhhCc-cccchhhhhHHHHHHHHHHHhhhhhhcC
Q 041827 79 TNFL---HTMCVWLSSSWKCKGAIAVVVSILIFRN-LVYITGMSGYTLTIIGVILYKEAKKQSK 138 (138)
Q Consensus 79 ~~f~---~tsalt~sv~~~~k~v~~i~~s~~~f~~-~~t~~~~~G~~l~~~Gv~~Y~~~k~~~k 138 (138)
+.++ .+||+|.+++| .|+.+.+.++.++++| |.++.+++|+.+.+.|-.+|++.|.|+|
T Consensus 244 ~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k 306 (314)
T KOG1444|consen 244 TSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK 306 (314)
T ss_pred HHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence 9999 89999999999 8888888888887766 7999999999999999999999998765
No 9
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.5e-13 Score=101.98 Aligned_cols=134 Identities=13% Similarity=0.177 Sum_probs=111.7
Q ss_pred chHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLSKV--NSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAK-QDVEFLWYLIFNSSLAYFVKL 78 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~--~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~n~ 78 (138)
|+++-|+..+.+|+.+... .-+.+.+|++..+.++.+|...+. ++ +.+.+.... ....+|..+.++|++||..|+
T Consensus 193 aSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~ln-ge-~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgy 270 (347)
T KOG1442|consen 193 ASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILN-GE-FQAVVGFPHLPAIKFWILMTLSGLFGFAMGY 270 (347)
T ss_pred HHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHc-ch-HHHHcCcccchHHHHHHHHHHHHHHHHHhhh
Confidence 5788899999999888632 358899999999999999976443 22 222222111 234578899999999999999
Q ss_pred HHHH---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhhhc
Q 041827 79 TNFL---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKKQS 137 (138)
Q Consensus 79 ~~f~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~~~ 137 (138)
..++ .|||+|++|.++.|.+...++++.+++|.-+..-|.|-.+.+.|...|++.|.+|
T Consensus 271 vTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~e 332 (347)
T KOG1442|consen 271 VTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHE 332 (347)
T ss_pred eeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHH
Confidence 9998 8999999999999999999999999999999999999999999999999998653
No 10
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.38 E-value=1.2e-11 Score=96.42 Aligned_cols=133 Identities=17% Similarity=0.148 Sum_probs=92.9
Q ss_pred chHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhh-hHHHHHHHHHHHHHHH-HHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSM-NLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQD-VEFLWYLIFNSSLAYF-VKL 78 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~-~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~n~ 78 (138)
|+++||++++.+|+..++.+|. ....+......+.+.+..+..|+.+...+......+ ....+..+.. .++|. +|.
T Consensus 197 aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t-~lay~lw~~ 275 (358)
T PLN00411 197 QGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIIT-SVYYVIHSW 275 (358)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHH-HHHHHHHHH
Confidence 5789999999999998877554 555666666666666666666543221111000101 1112222222 23433 444
Q ss_pred HHHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhhh
Q 041827 79 TNFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKKQ 136 (138)
Q Consensus 79 ~~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~~ 136 (138)
..- +.+|...++...+.|++.+++|++++||++++.+++|.++.+.|+++-+..|.+
T Consensus 276 ~v~-~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~ 332 (358)
T PLN00411 276 TVR-HKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKAN 332 (358)
T ss_pred HHh-ccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444 999999999999999999999999999999999999999999999998876654
No 11
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.35 E-value=6.3e-12 Score=91.87 Aligned_cols=125 Identities=12% Similarity=0.120 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041827 5 AWALRTVLQGILLS--KVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNFL 82 (138)
Q Consensus 5 ~~a~~~v~~k~~l~--~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~ 82 (138)
.+++....|++.-. +-+.-++|+|++.++.+.+-...++. ++ .+++.....++|..++-+.+-++.+.+.+.+.|.
T Consensus 183 mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfT-GE-lweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~ 260 (337)
T KOG1580|consen 183 MDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFT-GE-LWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFK 260 (337)
T ss_pred hcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheeh-hh-HHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHH
Confidence 46677777887765 56788999999999998887765443 33 3344445567788888888888888888888888
Q ss_pred ---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHh
Q 041827 83 ---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYK 131 (138)
Q Consensus 83 ---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~ 131 (138)
..+|++.||+.+.++.++++.|+++|++|++++||+|..+++.|...-.
T Consensus 261 tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 261 TVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 8999999999999999999999999999999999999999999987644
No 12
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.33 E-value=1.6e-11 Score=80.78 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHH
Q 041827 4 PAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLA-YFVKLTNFL 82 (138)
Q Consensus 4 ~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~n~~~f~ 82 (138)
++||...+..|+..++.||.+...++...+.+ +++.....+..+ ... .+...+......|.++ ...+...+.
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKP----FKN--LSPRQWLWLLFLGLLGTALAYLLYFY 73 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhcccc----ccC--CChhhhhhhhHhhccceehHHHHHHH
Confidence 46889999999999999999999999999998 777666655433 110 1111123333334443 222332333
Q ss_pred ---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHh
Q 041827 83 ---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYK 131 (138)
Q Consensus 83 ---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~ 131 (138)
++++...+....+.|+++.+.+++++||++++.+++|+.+.+.|+.+.+
T Consensus 74 a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 74 ALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999998754
No 13
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.30 E-value=9.1e-11 Score=89.00 Aligned_cols=128 Identities=10% Similarity=0.039 Sum_probs=95.8
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYF-VKLTN 80 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~~~ 80 (138)
|.+++|++.+..|+..++.+|.... +...++.+.+.|.....+.... ++ ...+...++..++++..++. +|...
T Consensus 156 aa~~~a~~~v~~r~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~---~~-~~~~~~~l~lgv~~t~~~~~l~~~~~ 230 (293)
T PRK10532 156 AGACWAIYILSGQRAGAEHGPATVA-IGSLIAALIFVPIGALQAGEAL---WH-WSILPLGLAVAILSTALPYSLEMIAL 230 (293)
T ss_pred HHHHHHHHHHHHHHHhccCCchHHH-HHHHHHHHHHHHHHHHccCccc---CC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999998778887764 5556677777777654332110 10 01111224555666666665 56555
Q ss_pred HHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhh
Q 041827 81 FLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKK 135 (138)
Q Consensus 81 f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~ 135 (138)
. +.+|...++...+.|++.++.|++++||++++.+++|.++.+.|++.++....
T Consensus 231 ~-~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~ 284 (293)
T PRK10532 231 T-RLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIR 284 (293)
T ss_pred H-hcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 5 99999999999999999999999999999999999999999999999875543
No 14
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.29 E-value=2.6e-10 Score=84.71 Aligned_cols=127 Identities=9% Similarity=0.073 Sum_probs=93.6
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhch-hhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEK-DVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTN 80 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 80 (138)
++++|+...+..|. ..++||.++.++|..++.+.+++......+ ....+..+..+ ....+..+...|++....+.+.
T Consensus 10 a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~ 87 (256)
T TIGR00688 10 ASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQ-KRPLILSLLLCGLLIGFNWWLF 87 (256)
T ss_pred HHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcc-cchHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998 457999999999999999888776543322 11111111110 1111234555666544455555
Q ss_pred HH---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHH
Q 041827 81 FL---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILY 130 (138)
Q Consensus 81 f~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y 130 (138)
+. ++++.+.++....-|+++.+++.+++|||++.++++|..+++.|+.+-
T Consensus 88 ~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 88 IWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 54 788899999999999999999999999999999999999999998864
No 15
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.20 E-value=6.4e-10 Score=86.76 Aligned_cols=123 Identities=16% Similarity=0.215 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041827 4 PAWALRTVLQGILLS-KVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNFL 82 (138)
Q Consensus 4 ~~~a~~~v~~k~~l~-~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~ 82 (138)
++.+-..++.|..++ .+||..+..||..++.++++|+....|++...+ +.+...+..+.+.|++++.++...|.
T Consensus 23 ~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~-----~~~~~~~~~l~l~g~~g~~~~~~~~~ 97 (358)
T PLN00411 23 TSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLP-----PLSVSILSKIGLLGFLGSMYVITGYI 97 (358)
T ss_pred HHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888888 799999999999999999999876554321101 01111245666677777556665555
Q ss_pred ---hhhhhHHhhhhhhhhHHHHHhHHHh------hCccccchhhhhHHHHHHHHHHHh
Q 041827 83 ---HTMCVWLSSSWKCKGAIAVVVSILI------FRNLVYITGMSGYTLTIIGVILYK 131 (138)
Q Consensus 83 ---~tsalt~sv~~~~k~v~~i~~s~~~------f~~~~t~~~~~G~~l~~~Gv~~Y~ 131 (138)
+|+|.+.++..+..|+++.++++++ ++|+++..+++|+++++.|+.+-.
T Consensus 98 gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~ 155 (358)
T PLN00411 98 GIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVI 155 (358)
T ss_pred HHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999 699999999999999999988744
No 16
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.18 E-value=1.7e-10 Score=85.84 Aligned_cols=130 Identities=19% Similarity=0.241 Sum_probs=104.9
Q ss_pred chHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhh-h-----------hhhHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLS--KVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALA-K-----------QDVEFLWYLI 67 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~--~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~-~-----------~~~~~~~~~~ 67 (138)
|.+.+|.-+++||...+ .-++-+.++|.-..+ +|..++..+ +..+++... + .-|..|..++
T Consensus 172 al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~Ls----LP~Flf~~~-div~~~~~~~~se~~~~p~~g~~vP~~~~yLl 246 (330)
T KOG1583|consen 172 ALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLS----LPLFLFMGD-DIVSHWRLAFKSESYLIPLLGFKVPSMWVYLL 246 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhc----cchHHHhcc-hHHHHHHHHhcCcceeccccCccccHHHHHHH
Confidence 35678888899998887 578999999998877 455444332 233333211 0 1256788999
Q ss_pred HHHHHHHHHHHHHHH---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhhh
Q 041827 68 FNSSLAYFVKLTNFL---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKKQ 136 (138)
Q Consensus 68 ~~~~~~~~~n~~~f~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~~ 136 (138)
.+++..+.+--..|. +++++|.+++-++|+-+..++|++.|++|+|+.+|+|..+++.|.++|+....+
T Consensus 247 ~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~ 318 (330)
T KOG1583|consen 247 FNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNH 318 (330)
T ss_pred HHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999998888888 999999999999999999999999999999999999999999999999876544
No 17
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.15 E-value=3.6e-09 Score=80.38 Aligned_cols=126 Identities=12% Similarity=0.101 Sum_probs=91.4
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNF 81 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f 81 (138)
+++.|+...+..|.. .++||.++..+|..++.+.+++..... ++ ..+.....+ ++..+......++.....+.+.|
T Consensus 16 a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~-~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 91 (296)
T PRK15430 16 AYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSIC-RQ-WSYLKTLIQ-TPQKIFMLAVSAVLIGGNWLLFI 91 (296)
T ss_pred HHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHH-cc-HHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999875 579999999999999998888765332 21 111111111 11112222233333333455555
Q ss_pred H---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHh
Q 041827 82 L---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYK 131 (138)
Q Consensus 82 ~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~ 131 (138)
+ ++++.+.++.....|+++.+++.+++||+++.+++.|+++++.|+.+-.
T Consensus 92 ~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 92 WAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 5 8999999999999999999999999999999999999999999998753
No 18
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.13 E-value=7.5e-10 Score=80.49 Aligned_cols=131 Identities=11% Similarity=0.066 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041827 4 PAWALRTVLQGILLS--KVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNF 81 (138)
Q Consensus 4 ~~~a~~~v~~k~~l~--~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f 81 (138)
+..+..-...|+-.+ +....+.++|.+.++..+++.+.++.|+..-.+..+..+.| .+..++++|++++...++.-
T Consensus 165 lssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d--~l~am~ISgl~svgiSy~sa 242 (309)
T COG5070 165 LSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVD--SLMAMFISGLCSVGISYCSA 242 (309)
T ss_pred HhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChH--HHHHHHHHHHHHhhhhhccc
Confidence 444555555555554 67789999999999999999999988864322222222222 36678899999998887777
Q ss_pred H---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhhh
Q 041827 82 L---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKKQ 136 (138)
Q Consensus 82 ~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~~ 136 (138)
+ .||..|++..|++++....+.|.++|++|.+...+..+.+-++.-..|.++|.+
T Consensus 243 WcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~ 300 (309)
T COG5070 243 WCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSK 300 (309)
T ss_pred eeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 899999999999999999999999999999999999999999999999888654
No 19
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.12 E-value=1.9e-09 Score=79.77 Aligned_cols=121 Identities=21% Similarity=0.217 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHH
Q 041827 2 DIPAWALRTVLQGILLSKVNS--MNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYF-VKL 78 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~--~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~ 78 (138)
|+++++.+++..|+..++.|+ .....++...+.+.+.|.....|++.. . ..+++........+....++. ++.
T Consensus 136 a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (260)
T TIGR00950 136 SGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQ-A---LSLQWGALLYLGLIGTALAYFLWNK 211 (260)
T ss_pred HHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCC-c---chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999876664 455556778888888888765443221 1 111111112222222333333 333
Q ss_pred HHHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHH
Q 041827 79 TNFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGV 127 (138)
Q Consensus 79 ~~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv 127 (138)
..- +.++.+.++...+.|++.++++++++||++++.++.|..+.+.|+
T Consensus 212 a~~-~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 212 GLT-LVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHh-cCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 322 899999999999999999999999999999999999999999986
No 20
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.12 E-value=2.4e-09 Score=81.14 Aligned_cols=131 Identities=14% Similarity=0.056 Sum_probs=93.2
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYF-VKLTN 80 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~~~ 80 (138)
|++++|.+++.+|+..+ .++.....+....+...+.|.....|.+.. . ....+.+....+..+..+..++. ++...
T Consensus 158 a~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~l~i~~s~~~~~l~~~~~ 234 (292)
T PRK11272 158 ASASWAFGSVWSSRLPL-PVGMMAGAAEMLAAGVVLLIASLLSGERLT-A-LPTLSGFLALGYLAVFGSIIAISAYMYLL 234 (292)
T ss_pred HHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHHHcCCccc-c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999753 345566677777777777777654432210 0 00111222223333444444543 44444
Q ss_pred HHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhhh
Q 041827 81 FLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKKQ 136 (138)
Q Consensus 81 f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~~ 136 (138)
. +.++.+.++...+.|+...+.+++++||++|+.+++|.++.+.|+++.+..+.|
T Consensus 235 ~-~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 235 R-NVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred h-hcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 899999999999999999999999999999999999999999999998776554
No 21
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.08 E-value=9.9e-09 Score=78.02 Aligned_cols=131 Identities=11% Similarity=0.128 Sum_probs=85.2
Q ss_pred chHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHhchhhHH-HHHHhh--hhhhHHHHHHHHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNS---MNLLMYMAPVAAIFLIPAVLIMEKDVVG-ITIALA--KQDVEFLWYLIFNSSLAYF 75 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~---~~l~~~~~~~~~~~l~~~~~~~e~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~ 75 (138)
|+++++.+++++|+..++.++ .....+....+.+.+.+.....|++... +.+... ..+....+..++++..++.
T Consensus 151 aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~ 230 (299)
T PRK11453 151 AAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYG 230 (299)
T ss_pred HHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999998754333 3334444444444444444444543211 111111 1222223333444455544
Q ss_pred -HHHHHHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhh
Q 041827 76 -VKLTNFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEA 133 (138)
Q Consensus 76 -~n~~~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~ 133 (138)
++.... +.+|.+.++...+.|++.++.|++++||++++.+++|.++.+.|+++-.+.
T Consensus 231 l~~~~l~-~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 231 IWGTLLG-RYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 333333 788889999999999999999999999999999999999999999885433
No 22
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.06 E-value=3.5e-09 Score=80.40 Aligned_cols=122 Identities=11% Similarity=0.153 Sum_probs=81.6
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYF-VKLTN 80 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~~~ 80 (138)
|++++|.++++.|+..++.|+...... .+...+.+.....|.+. ...+ ...+....+.. +.+.+++. +|...
T Consensus 164 aa~~~A~~~v~~k~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~--~~~~-~~~~~~l~~~~-~~t~~~~~l~~~al 236 (295)
T PRK11689 164 GAFIWAAYCNVTRKYARGKNGITLFFI---LTALALWIKYFLSPQPA--MVFS-LPAIIKLLLAA-AAMGFGYAAWNVGI 236 (295)
T ss_pred HHHHHHHHHHHHhhccCCCCchhHHHH---HHHHHHHHHHHHhcCcc--ccCC-HHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 678999999999999877888765432 22333333332322111 0010 01111112211 23344443 44444
Q ss_pred HHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHh
Q 041827 81 FLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYK 131 (138)
Q Consensus 81 f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~ 131 (138)
. +.+|...++...+.|++.++.+++++||++++.+++|.++.+.|++.-.
T Consensus 237 ~-~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 237 L-HGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred H-ccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence 4 8999999999999999999999999999999999999999999986653
No 23
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.96 E-value=1.2e-08 Score=78.80 Aligned_cols=129 Identities=16% Similarity=0.224 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYF-VKLTN 80 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~~~ 80 (138)
|+.+.|++++++|+..++.|+.+.+.....++.++..|.....|+.++.+. ++ +......++.-++.-|. +....
T Consensus 176 ~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~-~w---~~~~~~~~v~~~~~lf~~y~l~p 251 (334)
T PF06027_consen 176 GAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESI-HW---TSQVIGLLVGYALCLFLFYSLVP 251 (334)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhcc-CC---ChhhHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999998888887765332 11 12222333333333333 43433
Q ss_pred HH--hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhh
Q 041827 81 FL--HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAK 134 (138)
Q Consensus 81 f~--~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k 134 (138)
+. .+||+..++..-.-+...++.++++||+++++..++|.++.++|...|+...
T Consensus 252 ~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 252 IVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 33 8999999998888899999999999999999999999999999999998653
No 24
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.95 E-value=1.8e-08 Score=76.51 Aligned_cols=117 Identities=13% Similarity=0.099 Sum_probs=87.2
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNF 81 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f 81 (138)
++++|+...+..|..+++++|+.+..+|...+.++++|+. ..+..+ +.+ +..++..++....++...|
T Consensus 12 a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~---~~~~~~------~~~---~~~~~~~~l~~~~~~~~~~ 79 (295)
T PRK11689 12 AILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTV---GFPRLR------QFP---KRYLLAGGLLFVSYEICLA 79 (295)
T ss_pred HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHc---cccccc------ccc---HHHHHHHhHHHHHHHHHHH
Confidence 5788999999999999899999999999999988888752 112111 111 1222233332222444333
Q ss_pred H-------hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHH
Q 041827 82 L-------HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILY 130 (138)
Q Consensus 82 ~-------~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y 130 (138)
. .+++.+.++.....|+++.+++++++||++++++++|..+++.|+.+-
T Consensus 80 ~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li 135 (295)
T PRK11689 80 LSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWV 135 (295)
T ss_pred HHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhe
Confidence 2 356777889999999999999999999999999999999999998764
No 25
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.95 E-value=2.3e-08 Score=73.97 Aligned_cols=113 Identities=15% Similarity=0.093 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHH-
Q 041827 6 WALRTVLQGILLS-KVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYF-VKLTNFL- 82 (138)
Q Consensus 6 ~a~~~v~~k~~l~-~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~~~f~- 82 (138)
|+...+..|..++ ..|+.++.+++...+.+.+.|..... + .+.+ +......|.+++. .+.+.|.
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~--~--------~~~~---~~~~~~~~~~~~~l~~~~~~~a 67 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR--P--------PLKR---LLRLLLLGALQIGVFYVLYFVA 67 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc--c--------CHhH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999887 68999999999999988888864321 1 0111 2233445555544 5555555
Q ss_pred --hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHh
Q 041827 83 --HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYK 131 (138)
Q Consensus 83 --~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~ 131 (138)
++++-+.+++..+.|+++.+++.+++||+++++++.|+.++++|+.+..
T Consensus 68 ~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~ 118 (260)
T TIGR00950 68 VKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL 118 (260)
T ss_pred HHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence 8888889999999999999999999999999999999999999998864
No 26
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.93 E-value=2.3e-08 Score=75.38 Aligned_cols=123 Identities=11% Similarity=0.063 Sum_probs=88.4
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNF 81 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f 81 (138)
|++++|.+.+.+|+..++-++. ..++...+.+.++|.......+ ..+... +...+...+..++....++...+
T Consensus 9 aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 81 (281)
T TIGR03340 9 SALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQ---VGWSRL--PATFWLLLAISAVANMVYFLGLA 81 (281)
T ss_pred HHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhccc---CCCCCc--chhhHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999888754443 4667777777888876432111 111111 11123445556655555666656
Q ss_pred H---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHh
Q 041827 82 L---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYK 131 (138)
Q Consensus 82 ~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~ 131 (138)
. ++++-..++.....|+++.+++++++||+++.++++|+.+++.|+.+-.
T Consensus 82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG 134 (281)
T ss_pred HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 5 6778888888888999999999999999999999999999999998754
No 27
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.91 E-value=7.5e-08 Score=72.96 Aligned_cols=119 Identities=11% Similarity=0.040 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHHH
Q 041827 3 IPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYF-VKLTNF 81 (138)
Q Consensus 3 ~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~~~f 81 (138)
.+.|+...+..|..++++||.+...+|...+.+.++|.... ++.... . +.+ +......|.+.+. ++...+
T Consensus 17 ~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~-~~~~~~----~-~~~---~~~~~~~g~~~~~~~~~~~~ 87 (292)
T PRK11272 17 YIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLL-RGHPLP----T-LRQ---WLNAALIGLLLLAVGNGMVT 87 (292)
T ss_pred HHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH-hCCCCC----c-HHH---HHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998889999999999999999998887543 321110 0 111 2333445544432 222222
Q ss_pred H----hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHh
Q 041827 82 L----HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYK 131 (138)
Q Consensus 82 ~----~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~ 131 (138)
. ++++-..++.....|+++.+++.+ +||+++.++++|..+++.|+.+-.
T Consensus 88 ~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 88 VAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence 2 666777888999999999999985 799999999999999999998754
No 28
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.87 E-value=5.6e-08 Score=73.83 Aligned_cols=122 Identities=10% Similarity=0.132 Sum_probs=77.9
Q ss_pred chHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHH---HHHHHHH-
Q 041827 2 DIPAWALRTVLQGILLSK--VNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIF---NSSLAYF- 75 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~--~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~- 75 (138)
|++++|++.+..|+..++ .++.....+..+.+.+...+.. +.+. ..+.. ..+ ..+..+.. .+..++.
T Consensus 157 aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~-~~~-~~~~~~~~~g~~t~i~~~~ 229 (296)
T PRK15430 157 LAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSST--SHMGQ-NPM-SLNLLLIAAGIVTTVPLLC 229 (296)
T ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCc--ccccC-CcH-HHHHHHHHHHHHHHHHHHH
Confidence 578999999999997532 2334444455555544433321 1111 00000 000 11122222 3334443
Q ss_pred HHHHHHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHh
Q 041827 76 VKLTNFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYK 131 (138)
Q Consensus 76 ~n~~~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~ 131 (138)
++.... +.+|...++...+.|++.++.+++++||++++.++.|.++.+.|+.+..
T Consensus 230 ~~~a~~-~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 230 FTAAAT-RLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444444 8999999999999999999999999999999999999999988877654
No 29
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.83 E-value=1.2e-08 Score=74.33 Aligned_cols=125 Identities=9% Similarity=-0.025 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHhc---hhhHHHHHHhhhhhhH-HHHHHHHHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAV-LIME---KDVVGITIALAKQDVE-FLWYLIFNSSLAYFV 76 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~-~~~e---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 76 (138)
+..++++.++++++..++.+. ++|...++..+..+.. ...| ............+++. .+..++.++..+.+.
T Consensus 93 a~~~~~~~~~y~e~~~k~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v 169 (222)
T TIGR00803 93 ALLSSGFAGVYFEKILKDGDT---MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNVGGGLCI 169 (222)
T ss_pred HHHHHhhhHHHHHHcccCCCC---chHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHHHHhcCcee
Confidence 456788999999998873322 2454444444333332 1111 1111011111122222 333444444433443
Q ss_pred HHHHHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHH
Q 041827 77 KLTNFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILY 130 (138)
Q Consensus 77 n~~~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y 130 (138)
+.... +.++++.+++..++++++.++|+++|||+++..++.|..+++.|++.|
T Consensus 170 ~~vlk-~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 170 GGVVR-YADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred eehhH-HhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 33333 899999999999999999999999999999999999999999998876
No 30
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.79 E-value=1.8e-07 Score=71.14 Aligned_cols=115 Identities=18% Similarity=0.131 Sum_probs=83.6
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYF-VKLTN 80 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~~~ 80 (138)
++++|+...+..|..++++||.++..+|..++.+.+++... .++. + +......|++... .....
T Consensus 12 ~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~-~~~~-----------~---~~~~~~~g~~~~~~~~~~~ 76 (299)
T PRK11453 12 VVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVA-RPKV-----------P---LNLLLGYGLTISFGQFAFL 76 (299)
T ss_pred HHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc-CCCC-----------c---hHHHHHHHHHHHHHHHHHH
Confidence 56899999999999998999999999999988776666431 1110 0 1112222333222 22222
Q ss_pred HH---h-hhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHh
Q 041827 81 FL---H-TMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYK 131 (138)
Q Consensus 81 f~---~-tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~ 131 (138)
|. + .++-..++.....|+++.+++++++||+++.++++|.+++++|+.+-.
T Consensus 77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 22 3 456677888889999999999999999999999999999999988654
No 31
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.79 E-value=2.8e-08 Score=66.33 Aligned_cols=124 Identities=20% Similarity=0.160 Sum_probs=88.0
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNF 81 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f 81 (138)
++++.++..++.|.-++++||..-..-++.+..+++....+...+.+. ...-++..|..++++|+.+-.-.++-|
T Consensus 11 sA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~-----~~~~~~k~~lflilSGla~glswl~Yf 85 (140)
T COG2510 11 SALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQA-----GGEIGPKSWLFLILSGLAGGLSWLLYF 85 (140)
T ss_pred HHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceec-----ccccCcceehhhhHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999988887776543322111 111233346677788866655444444
Q ss_pred H--h-hhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHH
Q 041827 82 L--H-TMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILY 130 (138)
Q Consensus 82 ~--~-tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y 130 (138)
+ + -.+--..=....-+++++++|++++||++|..+++|..+..+|..+-
T Consensus 86 ~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv 137 (140)
T COG2510 86 RALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV 137 (140)
T ss_pred HHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence 4 1 11111122334558899999999999999999999999999998754
No 32
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.75 E-value=5e-08 Score=73.49 Aligned_cols=126 Identities=16% Similarity=0.113 Sum_probs=72.8
Q ss_pred chHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHH-HHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMN-LLMYMAPVAAIFL-IPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYF-VKL 78 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~-l~~~~~~~~~~~l-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~ 78 (138)
++++++++++..|+..++.+|.. ...+.. ...+.. .|...................+........+.+.+++. ++.
T Consensus 152 aal~~a~~~i~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~l~~~ 230 (281)
T TIGR03340 152 AALGTAIYSLSDKAAALGVPAFYSALGYLG-IGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGAYALVLW 230 (281)
T ss_pred HHHHHHHhhhhccccccchhcccccHHHHH-HHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999888755455432 222222 222222 33332211000000000001111112222233333443 333
Q ss_pred HHHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHH
Q 041827 79 TNFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVIL 129 (138)
Q Consensus 79 ~~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~ 129 (138)
... +.++...+....+.|++.++.|++++||++++.+++|.++.+.|+..
T Consensus 231 al~-~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 231 AMT-RLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHh-hCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 333 77777888888888999999999999999999999999999999875
No 33
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.73 E-value=6.9e-08 Score=72.19 Aligned_cols=132 Identities=14% Similarity=0.185 Sum_probs=99.6
Q ss_pred CchHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhh-HHHHHHHHHHHHHHH-H
Q 041827 1 PDIPAWALRTVLQGILLS--KVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDV-EFLWYLIFNSSLAYF-V 76 (138)
Q Consensus 1 ~a~~~~a~~~v~~k~~l~--~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~ 76 (138)
+|-++||.-..+|++.++ +-++.++.+|.-.+++..++....+. ++ +.+.|.....|+ ......++-++.+|. .
T Consensus 197 gALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlT-ge-~f~a~~fcaehp~~tyGy~~~~s~~gylG~ 274 (367)
T KOG1582|consen 197 GALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLT-GE-LFSAWTFCAEHPVRTYGYAFLFSLAGYLGI 274 (367)
T ss_pred HHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhc-cc-chhhhHHHHhCcHhHHHHHHHHHHHhHhhH
Confidence 356899999999999998 56779999999999999877766443 22 223343332232 234455556666776 3
Q ss_pred HH-HHHH-hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhh
Q 041827 77 KL-TNFL-HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAK 134 (138)
Q Consensus 77 n~-~~f~-~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k 134 (138)
+. .... ..+|.+.+.+.+.|+.+++++|.++|..|+|.+..-|..+.+.|+++--+.|
T Consensus 275 ~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 275 VFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 32 2222 8899999999999999999999999999999999999999999999855554
No 34
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.67 E-value=8.6e-07 Score=69.03 Aligned_cols=122 Identities=14% Similarity=0.085 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-
Q 041827 5 AWALRTVLQGILLSKVN-SMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNFL- 82 (138)
Q Consensus 5 ~~a~~~v~~k~~l~~~~-~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~- 82 (138)
++...++..|.++++.+ |+.+..++..++.+...+.... .....++ . +.+...+..++..|++++..+...+.
T Consensus 60 ~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~-~---~~~~~~~~~llp~gl~~~~~~~~~~~s 134 (350)
T PTZ00343 60 LNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWAT-GFRKIPR-I---KSLKLFLKNFLPQGLCHLFVHFGAVIS 134 (350)
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCC-C---CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788999998899 9999999999998766554322 1111000 0 00111345566667766654443334
Q ss_pred --hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHh
Q 041827 83 --HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYK 131 (138)
Q Consensus 83 --~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~ 131 (138)
.+++..++++-...|+++.+++.+++||+.+.+++.|.++++.|+.+-.
T Consensus 135 l~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 135 MGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 7999999999999999999999999999999999999999999998754
No 35
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.65 E-value=8.5e-07 Score=67.39 Aligned_cols=118 Identities=11% Similarity=0.012 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH--
Q 041827 6 WALRTVLQGILLSK-VNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNFL-- 82 (138)
Q Consensus 6 ~a~~~v~~k~~l~~-~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~-- 82 (138)
+...+++.|.++++ ..|+.+...+...+.+.+.+.......+. .+..++ .+..++..|++....+...+.
T Consensus 14 ~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~g~~~~~~~~~~~~~l 86 (302)
T TIGR00817 14 NVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKR----LKISSA---LLKLLLPVAIVHTIGHVTSNVSL 86 (302)
T ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCC----CCCCHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778999886 66899999888887766555421111110 000111 234555566665444444444
Q ss_pred -hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHH
Q 041827 83 -HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILY 130 (138)
Q Consensus 83 -~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y 130 (138)
++|+-+.++..+..|+++.+++.+++||+++.+++.|..+++.|+.+-
T Consensus 87 ~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 87 SKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 899999999999999999999999999999999999999999999764
No 36
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.60 E-value=2.7e-06 Score=55.86 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHH---hhhhhHHhhhhhhhhHHHHHh
Q 041827 28 YMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYF-VKLTNFL---HTMCVWLSSSWKCKGAIAVVV 103 (138)
Q Consensus 28 ~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~~~f~---~tsalt~sv~~~~k~v~~i~~ 103 (138)
++...+.+.+++.... ++ +..+.....++++ +......|.++.. .+...++ +.++ ..+....+.|+++.++
T Consensus 3 ~r~~~~~l~~~~~~~~-~~-~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll 77 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLI-RG-RLRDLFRALRRKP--WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALL 77 (113)
T ss_pred HHHHHHHHHHHHHHHH-Hc-cHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHH
Confidence 4455556655555433 22 2223233222222 2344455555553 2222222 4554 6668888999999999
Q ss_pred HHHhhCccccchhhhhHHHHHHHHHHHhhhhh
Q 041827 104 SILIFRNLVYITGMSGYTLTIIGVILYKEAKK 135 (138)
Q Consensus 104 s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~ 135 (138)
|.++|||+++..++.|..++++|+.+-.....
T Consensus 78 ~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 78 SWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999998766554
No 37
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.44 E-value=1.2e-05 Score=59.73 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=79.7
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHH----HHH-
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMY-MAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSL----AYF- 75 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~-~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~- 75 (138)
+.++++++++..|+.. +.++.....+ ..........+.. ..+.+ . ......+..+...+++ ++.
T Consensus 162 a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~---~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 162 AALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFF-LSGFG-----A---PILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHH-hcccc-----c---cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999988 6777777763 3321111222221 11111 0 0011112223333333 332
Q ss_pred HHHHHHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhh
Q 041827 76 VKLTNFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKK 135 (138)
Q Consensus 76 ~n~~~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~ 135 (138)
+..... ..++...+......|+..+..+++++||+++..+++|.++.+.|+......++
T Consensus 232 ~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 290 (292)
T COG0697 232 WYYALR-LLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRAR 290 (292)
T ss_pred HHHHHH-hcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 222222 78888888888899999999999999999999999999999999999887643
No 38
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.30 E-value=6.2e-05 Score=56.85 Aligned_cols=125 Identities=12% Similarity=0.109 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041827 3 IPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNFL 82 (138)
Q Consensus 3 ~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~ 82 (138)
-+.|++--.+.|.+- ++++.++..+|-..++++++...... +++++.++.. ++|..+....++++ -...|...|.
T Consensus 16 y~lwG~lp~y~kll~-~~~~~eIlahRviwS~~~~l~ll~~~--r~~~~~~~~~-~~p~~~~~~~l~a~-li~~nW~lfi 90 (293)
T COG2962 16 YLLWGLLPLYFKLLE-PLPATEILAHRVIWSFPFMLALLFLL--RQWRELKQLL-KQPKTLLMLALTAL-LIGLNWWLFI 90 (293)
T ss_pred HHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHH-hCcHHHHHHHHHHH-HHHHHHHHhh
Confidence 345565556666554 79999999999999999888776554 3333444422 23333333333333 2346777777
Q ss_pred ----hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhh
Q 041827 83 ----HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKE 132 (138)
Q Consensus 83 ----~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~ 132 (138)
+-..+..|.-=-++|++.++++.+++||+++..|++-..++.+||..-..
T Consensus 91 WAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 91 WAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred eecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 55678888888899999999999999999999999999999999987443
No 39
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.25 E-value=1.8e-05 Score=58.82 Aligned_cols=122 Identities=12% Similarity=0.064 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHH----HHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLA----YFVK 77 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~n 77 (138)
+..||+.|-+.+||.-+..|.-+-+.+-..+++++.+|+.....++.+ .+++.+..-+..++++ |...
T Consensus 156 AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l--------~~p~ll~laLgvavlSSalPYsLE 227 (292)
T COG5006 156 AGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPAL--------FSPSLLPLALGVAVLSSALPYSLE 227 (292)
T ss_pred HhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhh--------cChHHHHHHHHHHHHhcccchHHH
Confidence 568999999999999876677777788888889999998864433332 1223333333334444 3333
Q ss_pred HHHHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHh
Q 041827 78 LTNFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYK 131 (138)
Q Consensus 78 ~~~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~ 131 (138)
....-+.++=++++..++.|....+.+++++||++|+.||.|+...+.++.--+
T Consensus 228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~ 281 (292)
T COG5006 228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST 281 (292)
T ss_pred HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence 333328899999999999999999999999999999999999999998887443
No 40
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.95 E-value=9.6e-05 Score=54.99 Aligned_cols=120 Identities=13% Similarity=0.023 Sum_probs=80.3
Q ss_pred chHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLS--KVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLT 79 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~--~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 79 (138)
+++++|+.+++.|+++| +.|.+.--......+.++.++.....|+++..+..-....+...|..++..++.|......
T Consensus 122 ~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v 201 (244)
T PF04142_consen 122 AAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFV 201 (244)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHHHhhHHHHHH
Confidence 57889999999999998 4454444445555566655555444444322211101112334566777777777776665
Q ss_pred HHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHH
Q 041827 80 NFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTL 122 (138)
Q Consensus 80 ~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l 122 (138)
.- +.+.+.=.....+--+++.++|+++||.++|....+|..+
T Consensus 202 ~K-yadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 202 LK-YADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HH-HHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 55 6666666666677778999999999999999999998754
No 41
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.90 E-value=0.00048 Score=51.04 Aligned_cols=123 Identities=17% Similarity=0.154 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHH
Q 041827 3 IPAWALRTVLQGILLSK-VNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYF-VKLTN 80 (138)
Q Consensus 3 ~~~~a~~~v~~k~~l~~-~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~~~ 80 (138)
++.|+......|...++ .++.....++.....+...+... .+.. ..... +.+ +....+.+.++.. .+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~-~~~---~~~~~~~~~~~~~~~~~~~ 87 (292)
T COG0697 16 GLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLL-LEPR---GLRPA-LRP---WLLLLLLALLGLALPFLLL 87 (292)
T ss_pred HHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-hhcc---ccccc-ccc---hHHHHHHHHHHHHHHHHHH
Confidence 35666677777777654 66777777788777666333221 1110 00111 111 2333444444544 33444
Q ss_pred HH---hhhhhHHhhhhhhhhHHHHHhHH-HhhCccccchhhhhHHHHHHHHHHHhhh
Q 041827 81 FL---HTMCVWLSSSWKCKGAIAVVVSI-LIFRNLVYITGMSGYTLTIIGVILYKEA 133 (138)
Q Consensus 81 f~---~tsalt~sv~~~~k~v~~i~~s~-~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~ 133 (138)
+. ++++-...+.....|+.+.+.+. ++++|++++.++.|..+.+.|+.+-...
T Consensus 88 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~ 144 (292)
T COG0697 88 FLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLG 144 (292)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecC
Confidence 43 78889999999999999999997 6679999999999999999999886544
No 42
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=97.90 E-value=0.00026 Score=54.76 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHH-hhhh-hhHHHHHHHHHHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLS--KVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIA-LAKQ-DVEFLWYLIFNSSLAYFVK 77 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~--~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~n 77 (138)
+|+.+++-+++-++++| +.|-+---.-...++.++.+...+..|++... +. ...+ +...|..++.+++-|.+..
T Consensus 191 ~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~--~~gff~G~s~~vw~vVl~~a~gGLlvs 268 (345)
T KOG2234|consen 191 ACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAIN--EYGFFYGYSSIVWLVVLLNAVGGLLVS 268 (345)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccc--cCCccccccHHHHHHHHHHhccchhHH
Confidence 67899999999999997 44444444444445555555554455655433 22 2222 3445777888888887776
Q ss_pred HHHHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhhh
Q 041827 78 LTNFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKKQ 136 (138)
Q Consensus 78 ~~~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~~ 136 (138)
...-+ .+-+.-.-...+--+++.+.|+.+|+.++|..-.+|..+++..+..|+..+++
T Consensus 269 ~v~Ky-ADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 269 LVMKY-ADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR 326 (345)
T ss_pred HHHHH-hHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 65554 22222222233345778889999999999999999999999999999977665
No 43
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.87 E-value=0.00012 Score=54.50 Aligned_cols=72 Identities=14% Similarity=0.067 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhh
Q 041827 63 LWYLIFNSSLAYFVKLTNFL---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAK 134 (138)
Q Consensus 63 ~~~~~~~~~~~~~~n~~~f~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k 134 (138)
.....+.+++-...|...|. +.+|.++.+....|-+.+.+++++++|++++.+||.++.+.+.|+...+...
T Consensus 17 ~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~ 91 (244)
T PF04142_consen 17 TLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS 91 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence 35566788887778888888 8999999999999999999999999999999999999999999999876553
No 44
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.86 E-value=0.00057 Score=52.12 Aligned_cols=120 Identities=13% Similarity=0.041 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhc--CC--CHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041827 7 ALRTVLQGILLS--KV--NSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNFL 82 (138)
Q Consensus 7 a~~~v~~k~~l~--~~--~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~ 82 (138)
..+.+.+|++.+ .. .|..+.+.......+.-.+.......+ ..+.. .+...+..+++-+.-+.....
T Consensus 13 ~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF08449_consen 13 CSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP-------KSRKI--PLKKYAILSFLFFLASVLSNA 83 (303)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-------CCCcC--hHHHHHHHHHHHHHHHHHHHH
Confidence 356788999987 23 366666666666555444433222100 00111 122222333333333333333
Q ss_pred ---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhh
Q 041827 83 ---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKK 135 (138)
Q Consensus 83 ---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~ 135 (138)
+.+--++.+.-..|++.+.+++.+++|++.++.++.+..+..+|+......+.
T Consensus 84 al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~ 139 (303)
T PF08449_consen 84 ALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDS 139 (303)
T ss_pred HHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccc
Confidence 67888899999999999999999999999999999999999999999877654
No 45
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.78 E-value=0.00072 Score=51.41 Aligned_cols=118 Identities=15% Similarity=0.074 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHH----HHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAP----VAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVK 77 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~----~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 77 (138)
|.++.+++.+..|.. +.||.+..+.... .+.+++.+. .+.+. + ++......++.|++. ...
T Consensus 160 sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~----~-----~~~~~~~~~~~Gi~~-~ia 224 (290)
T TIGR00776 160 STIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGH---ILAKP----L-----KKYAILLNILPGLMW-GIG 224 (290)
T ss_pred HHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHH---hcccc----h-----HHHHHHHHHHHHHHH-HHH
Confidence 456778888888876 5889887555544 333333332 11111 1 011122223355553 322
Q ss_pred HHHH-H----hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhh----hhHHHHHHHHHHHhhhh
Q 041827 78 LTNF-L----HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGM----SGYTLTIIGVILYKEAK 134 (138)
Q Consensus 78 ~~~f-~----~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~----~G~~l~~~Gv~~Y~~~k 134 (138)
...| . +.++.+.++.....|+..++.+++++||+.+++|+ +|.++.+.|+.+-...|
T Consensus 225 ~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~~ 290 (290)
T TIGR00776 225 NFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIGK 290 (290)
T ss_pred HHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhccC
Confidence 2223 2 57789999999999999999999999999999999 99999999998765543
No 46
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.78 E-value=0.00083 Score=50.95 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=72.3
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNF 81 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f 81 (138)
|.++++...+..|...++.||.++..+|..++.+++++..... +.. . .+++ +...+..|++....+...|
T Consensus 20 a~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~-~~~----~--~~~~---~~~~~~~g~~~~~~~~~~~ 89 (293)
T PRK10532 20 AMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPW-RLR----F--AKEQ---RLPLLFYGVSLGGMNYLFY 89 (293)
T ss_pred HHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHH-hcc----C--CHHH---HHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999889999999999999998888764211 100 0 0111 1222233333333444444
Q ss_pred H---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHH
Q 041827 82 L---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILY 130 (138)
Q Consensus 82 ~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y 130 (138)
+ ++++-..++.....|+.+.+++. |+.+ +..++++++.|+.+.
T Consensus 90 ~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li 135 (293)
T PRK10532 90 LSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFL 135 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHhee
Confidence 4 67777777777888988887762 3322 345566667776553
No 47
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.72 E-value=0.0029 Score=41.44 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=40.9
Q ss_pred hhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHh
Q 041827 86 CVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYK 131 (138)
Q Consensus 86 alt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~ 131 (138)
.+.+++-..+--+.+.++++++|||++++.+++|+++.+.|+..-+
T Consensus 62 gvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 62 SVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4667787788889999999999999999999999999999998743
No 48
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.72 E-value=0.00093 Score=51.93 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhh
Q 041827 64 WYLIFNSSLAYFVKLTNFL---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEA 133 (138)
Q Consensus 64 ~~~~~~~~~~~~~n~~~f~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~ 133 (138)
+..++.|++=..-|..... +||..+..+..+.--.++.++|+++++++.++.|++|+.+++.|+..-...
T Consensus 80 w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 80 WKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 4444456666666766666 899999999999999999999999999999999999999999998865433
No 49
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.70 E-value=0.00041 Score=46.82 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=33.7
Q ss_pred hHHHHHhHHH--hhCccccchhhhhHHHHHHHHHHHhhhhhhc
Q 041827 97 GAIAVVVSIL--IFRNLVYITGMSGYTLTIIGVILYKEAKKQS 137 (138)
Q Consensus 97 ~v~~i~~s~~--~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~~~ 137 (138)
.+.+.+.++. +|||++|+.+++|+++.+.|++.-+..+.++
T Consensus 85 ~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~~ 127 (129)
T PRK02971 85 YALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKA 127 (129)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 5566666664 8999999999999999999999987665554
No 50
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.64 E-value=0.0017 Score=42.62 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=34.8
Q ss_pred hhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHH
Q 041827 93 WKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILY 130 (138)
Q Consensus 93 ~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y 130 (138)
..+.++.+.+.|+++|||++|+++++|+++.+.|+..-
T Consensus 70 ~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 70 LSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999764
No 51
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.56 E-value=0.0014 Score=49.74 Aligned_cols=122 Identities=13% Similarity=0.078 Sum_probs=74.5
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNF 81 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f 81 (138)
++++|+...+..|+.. +.++.+.. ...++..++.........+. .+++..+..-+++|++=-..|.+.|
T Consensus 9 a~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--------~~~~~~~~~g~l~G~~w~ig~~~~~ 77 (290)
T TIGR00776 9 PALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPE--------FWALSIFLVGLLSGAFWALGQINQF 77 (290)
T ss_pred HHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCc--------ccccHHHHHHHHHHHHHHhhhhhHH
Confidence 5788999999999886 57777665 33344444333332221111 1112223333444443222455555
Q ss_pred H---hhh-hhHHhhhhhhhhHHHHHhHHHhhCccccchh----hhhHHHHHHHHHHHhhhh
Q 041827 82 L---HTM-CVWLSSSWKCKGAIAVVVSILIFRNLVYITG----MSGYTLTIIGVILYKEAK 134 (138)
Q Consensus 82 ~---~ts-alt~sv~~~~k~v~~i~~s~~~f~~~~t~~~----~~G~~l~~~Gv~~Y~~~k 134 (138)
. +++ ++.+.+.....++...+.+.++|||+.+.++ ++|.+++++|+.+....|
T Consensus 78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 4 222 2222233557777888999999999999999 999999999999876554
No 52
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.50 E-value=0.004 Score=40.53 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=43.4
Q ss_pred hhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhh
Q 041827 84 TMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEA 133 (138)
Q Consensus 84 tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~ 133 (138)
--.+.+++-..+--+.+.++|+++|||++++.+++|+.+.+.|+..-+..
T Consensus 54 p~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 54 PVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 33467888888888999999999999999999999999999999876543
No 53
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.42 E-value=0.0062 Score=39.95 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=41.1
Q ss_pred hHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhh
Q 041827 87 VWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAK 134 (138)
Q Consensus 87 lt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k 134 (138)
+.+++-..+--+.+.+.|+++|||++++.+++|+.+.+.|+..-+...
T Consensus 58 iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 58 IAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 456666666788899999999999999999999999999999876543
No 54
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.40 E-value=0.015 Score=44.10 Aligned_cols=122 Identities=14% Similarity=0.199 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH----hchhhHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHH
Q 041827 4 PAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLI----MEKDVVGITIALAKQDVEFLWYLIFNSSLAYF-VKL 78 (138)
Q Consensus 4 ~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~ 78 (138)
+..++|...=|++ ++|+.+-+.. -+..+.|.++. .|.+. ...+ ....+.+.++..+|...-. ...
T Consensus 158 ~sf~~Ygl~RK~~--~v~a~~g~~l----E~l~l~p~al~yl~~l~~~~--~~~~--~~~~~~~~LLv~aG~vTavpL~l 227 (293)
T COG2962 158 LSFGLYGLLRKKL--KVDALTGLTL----ETLLLLPVALIYLLFLADSG--QFLQ--QNANSLWLLLVLAGLVTAVPLLL 227 (293)
T ss_pred HHHHHHHHHHHhc--CCchHHhHHH----HHHHHhHHHHHHHHHHhcCc--hhhh--cCCchHHHHHHHhhHHHHHHHHH
Confidence 4566676666655 5777654332 23334444432 22211 0111 1223345666666665543 333
Q ss_pred HHHH--hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhh
Q 041827 79 TNFL--HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKK 135 (138)
Q Consensus 79 ~~f~--~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~ 135 (138)
..-- +.+=-+..+.+-..|....+++++++|||++..+....+..-+|...|+.+..
T Consensus 228 f~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l 286 (293)
T COG2962 228 FAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL 286 (293)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 77777888999999999999999999999999999999999999999987643
No 55
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.27 E-value=0.0034 Score=47.67 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHH----HHHHHhchhh--------HHHHHHhh---hhhhHHHHH
Q 041827 3 IPAWALRTVLQGILLS--KVNSMNLLMYMAPVAAIFLI----PAVLIMEKDV--------VGITIALA---KQDVEFLWY 65 (138)
Q Consensus 3 ~~~~a~~~v~~k~~l~--~~~~~~l~~~~~~~~~~~l~----~~~~~~e~~~--------~~~~~~~~---~~~~~~~~~ 65 (138)
...-|++.+.-+|.++ +++|.+..-|-..++..++. |+..+--++. +.++.+.. ...+. ..
T Consensus 185 qiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~--l~ 262 (372)
T KOG3912|consen 185 QIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPS--LA 262 (372)
T ss_pred HHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCch--hH
Confidence 3456778888777777 79999999999998855433 3322211111 11111111 11121 11
Q ss_pred HHHHHH-HHH-HHHHHHHH---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhh
Q 041827 66 LIFNSS-LAY-FVKLTNFL---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEA 133 (138)
Q Consensus 66 ~~~~~~-~~~-~~n~~~f~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~ 133 (138)
+.+.+. ... ++|...-. ..||.|=.+.-.+|..++=+++.....|.+...|+.|.++-+.|.+.|+-.
T Consensus 263 val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~i 335 (372)
T KOG3912|consen 263 VALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQI 335 (372)
T ss_pred HHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 122 25655444 899999999999999999999999999999999999999999999999743
No 56
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.27 E-value=0.0095 Score=39.68 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=40.4
Q ss_pred hHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhh
Q 041827 87 VWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEA 133 (138)
Q Consensus 87 lt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~ 133 (138)
+.+++-..+--+.+.+.|+++|||++++.+++|+.+.+.|+..-+..
T Consensus 58 iAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 58 VAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 45666666678889999999999999999999999999999886553
No 57
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.022 Score=37.08 Aligned_cols=48 Identities=21% Similarity=0.168 Sum_probs=42.2
Q ss_pred hhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhh
Q 041827 86 CVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEA 133 (138)
Q Consensus 86 alt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~ 133 (138)
.+.+++-...=-+.+.+.|+++|||++++.+++|+.+.+.|+..-+..
T Consensus 57 gvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 57 GVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 356778888888999999999999999999999999999999876543
No 58
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.95 E-value=0.051 Score=42.35 Aligned_cols=113 Identities=11% Similarity=0.087 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHh----hhhhhHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHhh
Q 041827 19 KVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIAL----AKQDVEFLWYLIFNSSLAYFVKLTNFL---HTMCVWLSS 91 (138)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~n~~~f~---~tsalt~sv 91 (138)
++.|-...+..-..-.++.+...+..|+......... .-..+.-...+.+-+++-...|-..|. +.+|.|++|
T Consensus 44 ~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqV 123 (345)
T KOG2234|consen 44 MFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIYALQNNLQYVALSNLDAATYQV 123 (345)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhh
Confidence 3667777777776666666665544432200111110 011121234455566666677777777 899999999
Q ss_pred hhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHh
Q 041827 92 SWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYK 131 (138)
Q Consensus 92 ~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~ 131 (138)
..++|-.-+.++++++++++++++||.-.++-+.|+..-+
T Consensus 124 t~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 124 TYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998866
No 59
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.68 E-value=0.057 Score=36.75 Aligned_cols=116 Identities=21% Similarity=0.257 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH--
Q 041827 6 WALRTVLQGILLSKV-NSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNFL-- 82 (138)
Q Consensus 6 ~a~~~v~~k~~l~~~-~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~-- 82 (138)
-+++..+.-++-++. ||+.-.+.+...+++.+.....+.++++. +..++. .++..+.|++|..+-.+..+
T Consensus 13 i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~----~~~~~~---p~w~~lGG~lG~~~V~~~~~~v 85 (138)
T PF04657_consen 13 IALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSL----ASLSSV---PWWAYLGGLLGVFFVLSNIILV 85 (138)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccccc----chhccC---ChHHhccHHHHHHHHHHHHHHh
Confidence 344444444444434 59999999999999988888776665421 111111 23444588888774444443
Q ss_pred -hhhhhHHhhhhhhhhHHHHHhHHHh--h---CccccchhhhhHHHHHHHHH
Q 041827 83 -HTMCVWLSSSWKCKGAIAVVVSILI--F---RNLVYITGMSGYTLTIIGVI 128 (138)
Q Consensus 83 -~tsalt~sv~~~~k~v~~i~~s~~~--f---~~~~t~~~~~G~~l~~~Gv~ 128 (138)
+.++.+..+....-++..-++=--+ | ++|+++.++.|..+.+.|+.
T Consensus 86 p~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 86 PRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 6666665555444444444333332 2 46799999999999999986
No 60
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.60 E-value=0.00019 Score=53.99 Aligned_cols=115 Identities=12% Similarity=0.150 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH---h
Q 041827 7 ALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNFL---H 83 (138)
Q Consensus 7 a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~---~ 83 (138)
..-.++.++.+ +.||+++-..+...-.....|..+....+- ..+... =.++++=|+.|+.--...|+ +
T Consensus 50 ~~~~vv~t~~~-e~~p~e~a~~r~l~~mlit~pcliy~~~~v------~gp~g~--R~~LiLRg~mG~tgvmlmyya~~~ 120 (346)
T KOG4510|consen 50 NSCMVVSTKVL-ENDPMELASFRLLVRMLITYPCLIYYMQPV------IGPEGK--RKWLILRGFMGFTGVMLMYYALMY 120 (346)
T ss_pred hhHHHhhhhhh-ccChhHhhhhhhhhehhhhheEEEEEeeee------ecCCCc--EEEEEeehhhhhhHHHHHHHHHhh
Confidence 33445555555 577777777763333333333221111110 010000 02345566667665555555 3
Q ss_pred hhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHH
Q 041827 84 TMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILY 130 (138)
Q Consensus 84 tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y 130 (138)
-|---+.++.-..|++++++++.+++||.|..+.+|..+++.|+.+-
T Consensus 121 mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLI 167 (346)
T KOG4510|consen 121 MSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLI 167 (346)
T ss_pred cchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEE
Confidence 34344556666779999999999999999999999999999998764
No 61
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.19 E-value=0.07 Score=33.72 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=22.7
Q ss_pred hhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHH
Q 041827 86 CVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTL 122 (138)
Q Consensus 86 alt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l 122 (138)
.+.+.+....-.+.+.+.|.++|||++|+.++.|+.+
T Consensus 56 ~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 56 SVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 3456666667789999999999999999999999876
No 62
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.18 E-value=0.023 Score=44.68 Aligned_cols=128 Identities=14% Similarity=0.176 Sum_probs=86.7
Q ss_pred chHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHH----
Q 041827 2 DIPAWALRTVLQGILLS----KVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLA---- 73 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~----~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 73 (138)
+++.-|.+.++-|+-.. ++|--...-|...+..+++-|...+.+.-...+ .+. +.... ...++++++.+
T Consensus 255 sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~-F~l-P~~~q-~~~vv~~~ligtvvS 331 (416)
T KOG2765|consen 255 SALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEER-FEL-PSSTQ-FSLVVFNNLIGTVVS 331 (416)
T ss_pred HHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCc-ccC-CCCce-eEeeeHhhHHHHHHH
Confidence 46677888888888876 577777788999999999998877665332111 111 11111 12233344444
Q ss_pred -HHHHHHHHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhh
Q 041827 74 -YFVKLTNFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEA 133 (138)
Q Consensus 74 -~~~n~~~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~ 133 (138)
|++-...+ .|||++..+..++.--+.++.=.++=|.+.|+..++|....++|.+.-++.
T Consensus 332 DylW~~a~~-lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~ 391 (416)
T KOG2765|consen 332 DYLWAKAVL-LTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNIS 391 (416)
T ss_pred HHHHHHHHH-hccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecc
Confidence 33444444 899999888888765556655566667889999999999999999887655
No 63
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=95.15 E-value=0.062 Score=40.51 Aligned_cols=120 Identities=15% Similarity=0.242 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHH-
Q 041827 5 AWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYF-VKLTNFL- 82 (138)
Q Consensus 5 ~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~n~~~f~- 82 (138)
+-|.-|+..+.+.++.|-.+++-..+.+++++-..= ++.|..+... ...+.. ....+...++-|+ |.+.--.
T Consensus 177 lYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~t----l~w~~~-i~~yl~f~L~MFllYsl~pil~ 250 (336)
T KOG2766|consen 177 LYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQ-FIFERHHVST----LHWDSA-IFLYLRFALTMFLLYSLAPILI 250 (336)
T ss_pred eeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHH-Hhhhccceee----EeehHH-HHHHHHHHHHHHHHHHhhHHhe
Confidence 345667778888889999999999999998876665 4666543211 111111 1111223333344 4444444
Q ss_pred -hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhh
Q 041827 83 -HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKE 132 (138)
Q Consensus 83 -~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~ 132 (138)
.+||+.+++.--..+.-.+++ ..||-++.|.-.+..+....|.+.|+.
T Consensus 251 k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 251 KTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred ecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 788888888777777777776 788999999999999999999999953
No 64
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.86 E-value=0.04 Score=43.42 Aligned_cols=74 Identities=12% Similarity=0.098 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhh
Q 041827 62 FLWYLIFNSSLAYFVKLTNFL---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKK 135 (138)
Q Consensus 62 ~~~~~~~~~~~~~~~n~~~f~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~ 135 (138)
..+..+.-|.+=|.-|+.... .|+.-+..|....-..+++.++.++-+|++|+...++..+++.|+++-+..+.
T Consensus 158 ~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s 234 (416)
T KOG2765|consen 158 TAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDS 234 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccc
Confidence 345556666666666766655 89999999999999999999999999999999999999999999988766644
No 65
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=93.79 E-value=0.8 Score=35.16 Aligned_cols=67 Identities=12% Similarity=0.183 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHH
Q 041827 63 LWYLIFNSSLAYFVKLTNFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVIL 129 (138)
Q Consensus 63 ~~~~~~~~~~~~~~n~~~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~ 129 (138)
|+.-+..-.+|-..|...+-..++.-.+=.+.+--+...+++..++||+++...+.|.++++.|...
T Consensus 53 W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~l 119 (300)
T PF05653_consen 53 WWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVL 119 (300)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhhee
Confidence 3333333344555666666423333344456666788899999999999999999999999999875
No 66
>PRK13499 rhamnose-proton symporter; Provisional
Probab=92.76 E-value=3.9 Score=32.13 Aligned_cols=126 Identities=11% Similarity=0.014 Sum_probs=65.5
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH--HhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVL--IMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLT 79 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 79 (138)
+.+|++...+-+|+. +--++|...-..-+-.-++.|+.. +.+ +.+.+..+. .++..+..-+++|++=-.-|..
T Consensus 15 ~~~~~GS~~~p~K~~--k~w~wE~~W~v~gi~~wl~~~~~~g~~~~-~~f~~~~~~--~~~~~~~~~~l~G~~W~iG~i~ 89 (345)
T PRK13499 15 GGASSGSFYAPFKKV--KKWSWETMWSVGGIFSWLILPWLIAALLL-PDFWAYYSS--FSGSTLLPVFLFGALWGIGGIT 89 (345)
T ss_pred HHHHhhccccccccc--CCCchhHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHh--cCHHHHHHHHHHHHHHHhhhhh
Confidence 356666666777773 344555552222221223444222 122 222222221 2333344444455443334444
Q ss_pred HHH----hhhhhHHhhhhhhhhHHHHHhHHHhhCcc---cc----chhhhhHHHHHHHHHHHhh
Q 041827 80 NFL----HTMCVWLSSSWKCKGAIAVVVSILIFRNL---VY----ITGMSGYTLTIIGVILYKE 132 (138)
Q Consensus 80 ~f~----~tsalt~sv~~~~k~v~~i~~s~~~f~~~---~t----~~~~~G~~l~~~Gv~~Y~~ 132 (138)
.+. .--++++.+..-+.-+...+++.+++||- ++ .....|.++.++|+.+-++
T Consensus 90 ~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 90 YGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 444 22234444555555777888888888852 23 3468899999999999776
No 67
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.72 E-value=2.3 Score=29.40 Aligned_cols=123 Identities=13% Similarity=0.138 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH--
Q 041827 6 WALRTVLQGILLSKV-NSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNFL-- 82 (138)
Q Consensus 6 ~a~~~v~~k~~l~~~-~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~-- 82 (138)
-.+++-.--++.+.. ||+--...........+....++.|+..-.. ..... .++....|++|..+-..+-.
T Consensus 17 l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a---~~~~~---pwW~~~GG~lGa~~vt~s~~l~ 90 (150)
T COG3238 17 LPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLA---AVASA---PWWAWIGGLLGAIFVTSSILLA 90 (150)
T ss_pred hhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchh---hccCC---chHHHHccchhhhhhhhhHHhc
Confidence 334444434444323 5877777778887877777776655432111 11222 24445677877553332222
Q ss_pred -hhhhhHHhhhhhhhhHHHHHhHHHh--hC---ccccchhhhhHHHHHHHHHHHhhhh
Q 041827 83 -HTMCVWLSSSWKCKGAIAVVVSILI--FR---NLVYITGMSGYTLTIIGVILYKEAK 134 (138)
Q Consensus 83 -~tsalt~sv~~~~k~v~~i~~s~~~--f~---~~~t~~~~~G~~l~~~Gv~~Y~~~k 134 (138)
+.++.+.-.....-++..-++--.+ || +|+++..+.|+++.+.|++.-+..+
T Consensus 91 p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 91 PRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 4544444443333333222222211 22 5689999999999999966655443
No 68
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=92.64 E-value=2 Score=31.62 Aligned_cols=25 Identities=8% Similarity=-0.085 Sum_probs=23.0
Q ss_pred hhhhhHHhhhhhhhhHHHHHhHHHh
Q 041827 83 HTMCVWLSSSWKCKGAIAVVVSILI 107 (138)
Q Consensus 83 ~tsalt~sv~~~~k~v~~i~~s~~~ 107 (138)
+.+|...++...+.|++..+.+++.
T Consensus 231 ~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 231 RLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999998764
No 69
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=92.40 E-value=3.8 Score=31.10 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchh----hhhHHHHHHHHHHH
Q 041827 63 LWYLIFNSSLAYFVKLTNFL--------HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITG----MSGYTLTIIGVILY 130 (138)
Q Consensus 63 ~~~~~~~~~~~~~~n~~~f~--------~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~----~~G~~l~~~Gv~~Y 130 (138)
+..-+++|++=-.-|..+|. ++-|++... .=+...+.++++|||.-+..+ ..++++.++|+.+-
T Consensus 45 ~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~----QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lt 120 (269)
T PF06800_consen 45 FIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGL----QLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILT 120 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhH----HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHh
Confidence 34445555544334444444 677776665 234477899999999766544 45788889999987
Q ss_pred hhhhhh
Q 041827 131 KEAKKQ 136 (138)
Q Consensus 131 ~~~k~~ 136 (138)
++.+++
T Consensus 121 s~~~~~ 126 (269)
T PF06800_consen 121 SYQDKK 126 (269)
T ss_pred cccccc
Confidence 776554
No 70
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=90.85 E-value=0.085 Score=40.04 Aligned_cols=122 Identities=9% Similarity=0.067 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-
Q 041827 4 PAWALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNFL- 82 (138)
Q Consensus 4 ~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~- 82 (138)
++.|.--+.-+++-++.|....+.|-+.++.+-.+........-+++ +-.++ ++++...|+.||..++..-.
T Consensus 201 lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP---~cgkd----r~l~~~lGvfgfigQIllTm~ 273 (346)
T KOG4510|consen 201 LFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLP---HCGKD----RWLFVNLGVFGFIGQILLTMG 273 (346)
T ss_pred hhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecC---ccccc----eEEEEEehhhhhHHHHHHHHH
Confidence 33344445555555566666666666666655444332211101110 11122 34555667777775554433
Q ss_pred ----hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhh
Q 041827 83 ----HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAK 134 (138)
Q Consensus 83 ----~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k 134 (138)
+.+|. +++....-++..+--+++|||-.|+..+.|+++.+....|-...|
T Consensus 274 lQiErAGpv--aim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 274 LQIERAGPV--AIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred hhhhccCCe--ehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 55554 566677778888888999999999999999998888877765554
No 71
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=89.28 E-value=1.2 Score=34.16 Aligned_cols=48 Identities=8% Similarity=0.034 Sum_probs=42.0
Q ss_pred hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHH
Q 041827 83 HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILY 130 (138)
Q Consensus 83 ~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y 130 (138)
.|+|.++...-..--+++-+.|..+++++++..||+|+..+.+|+..-
T Consensus 109 lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviV 156 (372)
T KOG3912|consen 109 LTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIV 156 (372)
T ss_pred HhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhhee
Confidence 788888887777667888889999999999999999999999998763
No 72
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=87.27 E-value=0.65 Score=30.60 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=30.7
Q ss_pred hhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHH
Q 041827 91 SSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVI 128 (138)
Q Consensus 91 v~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~ 128 (138)
+.|.+.=+++.+.+.++.+|..++..++|+.+++.|+.
T Consensus 73 i~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~ 110 (113)
T PF10639_consen 73 IANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVA 110 (113)
T ss_pred HHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCee
Confidence 34455577888888777777788899999999999975
No 73
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=86.21 E-value=3.9 Score=31.65 Aligned_cols=121 Identities=12% Similarity=0.024 Sum_probs=73.1
Q ss_pred HHHHHHHHHhc--------CC-CHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 041827 8 LRTVLQGILLS--------KV-NSMNLLMYMAPVAAIFLIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKL 78 (138)
Q Consensus 8 ~~~v~~k~~l~--------~~-~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 78 (138)
...++|+++++ +. +|.-+.+.+...+.+.-.. .+...+.. ......+...+..-+.+.+.+.+.-.
T Consensus 28 ~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~--~l~~~k~~---~~~~apl~~y~~is~tn~~s~~~~ye 102 (327)
T KOG1581|consen 28 TWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYA--MLKWWKKE---LSGVAPLYKYSLISFTNTLSSWCGYE 102 (327)
T ss_pred HHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHH--HHhccccc---CCCCCchhHHhHHHHHhhcchHHHHH
Confidence 35678888886 22 4555666666554433311 11111110 00001111122333344444443323
Q ss_pred HHHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhh
Q 041827 79 TNFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAK 134 (138)
Q Consensus 79 ~~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k 134 (138)
+-. +.|=-|.-++=+.|-+.+++.+.++.|.+.++....-..+.-.|+..++..+
T Consensus 103 aLK-yvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~ 157 (327)
T KOG1581|consen 103 ALK-YVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFP 157 (327)
T ss_pred HHH-hccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEec
Confidence 333 6666778888999999999999999999999999999999999998876553
No 74
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=82.22 E-value=11 Score=24.49 Aligned_cols=94 Identities=14% Similarity=0.020 Sum_probs=53.3
Q ss_pred HHHHHHHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHhhhhhhhhHHHHHhHHHhhCccccch
Q 041827 37 LIPAVLIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKLTNFL-HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYIT 115 (138)
Q Consensus 37 l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~-~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~ 115 (138)
++..+-+.|-..-.-.|...|.+.+.++.+.....++..--+.++. ....=.++..|-+=-+..++=.+.+-|++.+..
T Consensus 7 lF~lAalaEIgG~yl~W~wlR~~k~~~~~~~G~~~L~lfg~l~Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~ 86 (107)
T PF02694_consen 7 LFVLAALAEIGGCYLVWLWLREGKSPWWLLPGALSLALFGWLLTLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRW 86 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCeeeHhhHHHHHHHHHHHhhcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChH
Confidence 3333345553222223333344333334433333333222333343 233334566666666777777788889999999
Q ss_pred hhhhHHHHHHHHHHH
Q 041827 116 GMSGYTLTIIGVILY 130 (138)
Q Consensus 116 ~~~G~~l~~~Gv~~Y 130 (138)
.++|.++++.|+..-
T Consensus 87 D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 87 DWIGAAICLVGVAII 101 (107)
T ss_pred HHHhHHHHHHhHHhe
Confidence 999999999998764
No 75
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=81.16 E-value=22 Score=27.06 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=36.1
Q ss_pred HHHHHHH---hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchh----hhhHHHHHHHHH
Q 041827 76 VKLTNFL---HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITG----MSGYTLTIIGVI 128 (138)
Q Consensus 76 ~n~~~f~---~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~----~~G~~l~~~Gv~ 128 (138)
-|...+. ..+.-+.=..+.+-.++..+.+.+++||+=+.++ .+|.++.+.|..
T Consensus 208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 4444444 4444444455666688999999999999877665 567777777764
No 76
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=78.99 E-value=0.85 Score=33.30 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=45.2
Q ss_pred hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhh
Q 041827 83 HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEA 133 (138)
Q Consensus 83 ~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~ 133 (138)
..||...+-..+.+..++-+++++.+||++....+....+++.|+.+.++.
T Consensus 76 ~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 76 KISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred hcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 778888888888999999999999999999999999999999998776544
No 77
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=76.82 E-value=1.3 Score=22.34 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhhhhhcC
Q 041827 120 YTLTIIGVILYKEAKKQSK 138 (138)
Q Consensus 120 ~~l~~~Gv~~Y~~~k~~~k 138 (138)
+.+++.|...|.+.|+|+|
T Consensus 6 i~L~l~ga~f~~fKKyQ~~ 24 (33)
T PF10855_consen 6 IILILGGAAFYGFKKYQNH 24 (33)
T ss_pred ehhhhhhHHHHHHHHHHHH
Confidence 4588899999999998864
No 78
>PRK02237 hypothetical protein; Provisional
Probab=75.86 E-value=19 Score=23.50 Aligned_cols=43 Identities=7% Similarity=-0.099 Sum_probs=34.2
Q ss_pred HHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHH
Q 041827 88 WLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILY 130 (138)
Q Consensus 88 t~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y 130 (138)
.++..|-+=-+..++=.+.+-|.+.+...++|.+++++|+..-
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 4556666656666677778889999999999999999998764
No 79
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=75.50 E-value=3.2 Score=26.99 Aligned_cols=28 Identities=7% Similarity=0.028 Sum_probs=23.7
Q ss_pred HHhHHHhhCccccchhhhhHHHHHHHHH
Q 041827 101 VVVSILIFRNLVYITGMSGYTLTIIGVI 128 (138)
Q Consensus 101 i~~s~~~f~~~~t~~~~~G~~l~~~Gv~ 128 (138)
+..|++++|||+++.+..|.+..+.+++
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVY 104 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhh
Confidence 4578889999999999999988877754
No 80
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=74.35 E-value=7.3 Score=29.32 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.2
Q ss_pred ccchhhhhHHHHHHHHHHHhhhhhhc
Q 041827 112 VYITGMSGYTLTIIGVILYKEAKKQS 137 (138)
Q Consensus 112 ~t~~~~~G~~l~~~Gv~~Y~~~k~~~ 137 (138)
-.+.|++|+++.++|...|...|..+
T Consensus 114 ~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 114 SPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhHHHHHHHHHHHHHHHheeeecCCC
Confidence 44789999999999999998887654
No 81
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=73.17 E-value=14 Score=28.30 Aligned_cols=50 Identities=18% Similarity=0.318 Sum_probs=36.8
Q ss_pred hhhhhHHhhhhhhhhHHHHHhHHHhhCc--cccchh----hhhHHHHHHHHHHHhhhhhh
Q 041827 83 HTMCVWLSSSWKCKGAIAVVVSILIFRN--LVYITG----MSGYTLTIIGVILYKEAKKQ 136 (138)
Q Consensus 83 ~tsalt~sv~~~~k~v~~i~~s~~~f~~--~~t~~~----~~G~~l~~~Gv~~Y~~~k~~ 136 (138)
...|+.+... ....++.|.++|+| +.++.+ ..|..+.+.|+.+-+..|..
T Consensus 241 ~V~P~~~v~~----t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~ 296 (300)
T PF05653_consen 241 LVVPVYYVFF----TLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDK 296 (300)
T ss_pred EEEeehhHHH----HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCch
Confidence 5667777766 56889999999997 466644 56778888998886655543
No 82
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.62 E-value=3.5 Score=32.11 Aligned_cols=67 Identities=9% Similarity=0.247 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHH
Q 041827 63 LWYLIFNSSLAYFVKLTNFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVIL 129 (138)
Q Consensus 63 ~~~~~~~~~~~~~~n~~~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~ 129 (138)
|+.-.+.=.+|=..|+..|-...+.-..=.|++--+...+++..+++|+++....+|.+++++|...
T Consensus 67 Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~ 133 (335)
T KOG2922|consen 67 WWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTT 133 (335)
T ss_pred HHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEE
Confidence 4444444444555677777622222222334455667789999999999999999999999999754
No 83
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=65.83 E-value=3.2 Score=31.21 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=39.6
Q ss_pred hhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhh
Q 041827 90 SSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEA 133 (138)
Q Consensus 90 sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~ 133 (138)
-+.-..||+-+.++++.+.+.+-+|+...-..+.+.|+.++-+.
T Consensus 115 VlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK 158 (337)
T KOG1580|consen 115 VLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYK 158 (337)
T ss_pred HhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcc
Confidence 34557899999999999999999999999999999999988765
No 84
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=64.08 E-value=5.2 Score=22.09 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHHHHhhhhhhcC
Q 041827 116 GMSGYTLTIIGVILYKEAKKQSK 138 (138)
Q Consensus 116 ~~~G~~l~~~Gv~~Y~~~k~~~k 138 (138)
-+-|..+.-+|.++|..+|++.|
T Consensus 7 lvSG~GLig~G~Yv~~~ark~~k 29 (47)
T PF15055_consen 7 LVSGGGLIGAGAYVYAQARKRMK 29 (47)
T ss_pred EecccchHHHHHHHHHHHhhccc
Confidence 34566777789999999998865
No 85
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.49 E-value=14 Score=23.80 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=24.5
Q ss_pred HHhHHHhhCccccchhhhhHHHHHHHHHH
Q 041827 101 VVVSILIFRNLVYITGMSGYTLTIIGVIL 129 (138)
Q Consensus 101 i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~ 129 (138)
...|+++++||+++-++.|..+...|++.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 35688999999999999999888877764
No 86
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=63.40 E-value=70 Score=24.94 Aligned_cols=56 Identities=9% Similarity=0.104 Sum_probs=43.1
Q ss_pred HHHHHHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccc----------------------hhhhhHHHHHHHHHHHhh
Q 041827 76 VKLTNFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYI----------------------TGMSGYTLTIIGVILYKE 132 (138)
Q Consensus 76 ~n~~~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~----------------------~~~~G~~l~~~Gv~~Y~~ 132 (138)
-|.+.- +.+--....+-...|.++.+++.++.+|+.++ .|+.|...++.+......
T Consensus 100 ~n~Sl~-~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al 177 (316)
T KOG1441|consen 100 GNVSLS-YVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFAL 177 (316)
T ss_pred cchhhh-ccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHH
Confidence 444433 66666777888888999999999999998775 678888888888766543
No 87
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=63.22 E-value=9.2 Score=23.81 Aligned_cols=26 Identities=19% Similarity=0.023 Sum_probs=21.5
Q ss_pred cccchhhhhHHHHHHHHHHHhhhhhh
Q 041827 111 LVYITGMSGYTLTIIGVILYKEAKKQ 136 (138)
Q Consensus 111 ~~t~~~~~G~~l~~~Gv~~Y~~~k~~ 136 (138)
..++.+++|+.+.+.|..+|...+.+
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~ 29 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFR 29 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 46788999999999999999766554
No 88
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=63.01 E-value=1.3 Score=33.61 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=43.1
Q ss_pred hhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHH
Q 041827 83 HTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVIL 129 (138)
Q Consensus 83 ~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~ 129 (138)
+||-++.+..-+--..++.++|+++++.+-.+.++.|.++++.|+.+
T Consensus 101 yTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~Gvvm 147 (336)
T KOG2766|consen 101 YTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVM 147 (336)
T ss_pred hcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEE
Confidence 78888888888888899999999999999999999999999999765
No 89
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=58.20 E-value=10 Score=20.94 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHhhhhhhc
Q 041827 117 MSGYTLTIIGVILYKEAKKQS 137 (138)
Q Consensus 117 ~~G~~l~~~Gv~~Y~~~k~~~ 137 (138)
.+-+.+.++|+++|.+.+++.
T Consensus 16 l~~~~~~Figiv~wa~~p~~k 36 (48)
T cd01324 16 LLYLALFFLGVVVWAFRPGRK 36 (48)
T ss_pred HHHHHHHHHHHHHHHhCCCcc
Confidence 333578899999999887654
No 90
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=56.26 E-value=11 Score=20.67 Aligned_cols=20 Identities=10% Similarity=0.340 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHhhhhhh
Q 041827 117 MSGYTLTIIGVILYKEAKKQ 136 (138)
Q Consensus 117 ~~G~~l~~~Gv~~Y~~~k~~ 136 (138)
.+-..+.++|+++|.+.|++
T Consensus 15 ~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHcccc
Confidence 33455778888888887664
No 91
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=55.55 E-value=14 Score=21.93 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=16.2
Q ss_pred hhhhHHHHHHHHHHHhhhhh
Q 041827 116 GMSGYTLTIIGVILYKEAKK 135 (138)
Q Consensus 116 ~~~G~~l~~~Gv~~Y~~~k~ 135 (138)
-.+|++++++|.++|...++
T Consensus 6 iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 46799999999999976544
No 92
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.09 E-value=64 Score=21.85 Aligned_cols=32 Identities=16% Similarity=0.418 Sum_probs=25.1
Q ss_pred hHHHHHhHHHhhCccccchhhhhHHHHHHHHH
Q 041827 97 GAIAVVVSILIFRNLVYITGMSGYTLTIIGVI 128 (138)
Q Consensus 97 ~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~ 128 (138)
..+.++.|+++-+...+..+.+|+.+++.|++
T Consensus 76 s~vLil~g~~la~t~~~~i~~ig~~l~li~il 107 (143)
T COG3296 76 SFVLILAGVFLAATDISFIIIIGFFLTLIGIL 107 (143)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 45666777777778888888888888888877
No 93
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=48.70 E-value=24 Score=25.29 Aligned_cols=45 Identities=9% Similarity=0.007 Sum_probs=34.2
Q ss_pred hhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhh
Q 041827 91 SSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKK 135 (138)
Q Consensus 91 v~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~ 135 (138)
+.-+.|++.+.+.+...++++.+..++++.++...|++.-...+.
T Consensus 9 ~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~ 53 (222)
T TIGR00803 9 IFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDD 53 (222)
T ss_pred HHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHH
Confidence 344667788888888888888888888888888888876554443
No 94
>PHA03049 IMV membrane protein; Provisional
Probab=45.58 E-value=25 Score=20.80 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHHHHHhhhhh
Q 041827 116 GMSGYTLTIIGVILYKEAKK 135 (138)
Q Consensus 116 ~~~G~~l~~~Gv~~Y~~~k~ 135 (138)
-.++++++++|.++|...++
T Consensus 6 ~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999976544
No 95
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=42.11 E-value=1.5e+02 Score=22.36 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041827 64 WYLIFNSSLAYFVKLTNFL 82 (138)
Q Consensus 64 ~~~~~~~~~~~~~n~~~f~ 82 (138)
..++.+-+.+|++|...|.
T Consensus 161 ~~F~~af~vAflFnwIGFl 179 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFL 179 (262)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888887
No 96
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=38.36 E-value=44 Score=17.95 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=16.0
Q ss_pred hCccccchhhhhHHHHHH-HHHHHhhhh
Q 041827 108 FRNLVYITGMSGYTLTII-GVILYKEAK 134 (138)
Q Consensus 108 f~~~~t~~~~~G~~l~~~-Gv~~Y~~~k 134 (138)
|++++.....+.++.++. |++++.+..
T Consensus 7 F~s~vGL~Sl~vI~~~igm~~~~~~~F~ 34 (42)
T PF11346_consen 7 FGSDVGLMSLIVIVFTIGMGVFFIRYFI 34 (42)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888777777655543 333434433
No 97
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=37.43 E-value=48 Score=18.15 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=21.7
Q ss_pred hHHHHHhHHHhhCccccchh--hhhHHHHHHHHHHHhhhhhhc
Q 041827 97 GAIAVVVSILIFRNLVYITG--MSGYTLTIIGVILYKEAKKQS 137 (138)
Q Consensus 97 ~v~~i~~s~~~f~~~~t~~~--~~G~~l~~~Gv~~Y~~~k~~~ 137 (138)
|+.+++++.+=+..-+.+.. .+=....++|...|...|+|.
T Consensus 2 PiLviL~g~vGLsa~vgyLDyvL~PaLa~fi~lt~yal~r~~~ 44 (46)
T PF11431_consen 2 PILVILFGAVGLSALVGYLDYVLLPALAVFIGLTIYALWRRRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHSHTTTSTTTTHHHHHHHHHHHHHHHHH
T ss_pred ceehHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555444333233222 234456677888887776654
No 98
>PF14981 FAM165: FAM165 family
Probab=35.92 E-value=29 Score=19.06 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHhhhhh
Q 041827 119 GYTLTIIGVILYKEAKK 135 (138)
Q Consensus 119 G~~l~~~Gv~~Y~~~k~ 135 (138)
=.++++.|+=+|...|.
T Consensus 19 ilClaFAgvK~yQ~krl 35 (51)
T PF14981_consen 19 ILCLAFAGVKMYQRKRL 35 (51)
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 35788999999987754
No 99
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=35.71 E-value=38 Score=16.56 Aligned_cols=14 Identities=14% Similarity=0.002 Sum_probs=7.1
Q ss_pred ccchhhhhHHHHHH
Q 041827 112 VYITGMSGYTLTII 125 (138)
Q Consensus 112 ~t~~~~~G~~l~~~ 125 (138)
-.+.-++|+++...
T Consensus 10 ~~~~~~~G~~l~~~ 23 (34)
T TIGR01167 10 NSLLLLLGLLLLGL 23 (34)
T ss_pred cHHHHHHHHHHHHH
Confidence 34556677733333
No 100
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.58 E-value=72 Score=25.04 Aligned_cols=52 Identities=12% Similarity=0.298 Sum_probs=34.9
Q ss_pred hhhhhHHhhhhhhhhHHHHHhHHHhhCcc--ccch----hhhhHHHHHHHHHHHhhhh
Q 041827 83 HTMCVWLSSSWKCKGAIAVVVSILIFRNL--VYIT----GMSGYTLTIIGVILYKEAK 134 (138)
Q Consensus 83 ~tsalt~sv~~~~k~v~~i~~s~~~f~~~--~t~~----~~~G~~l~~~Gv~~Y~~~k 134 (138)
.-+++...+.-.+=..++++-|.++|+|- .+.. ...|...++.|+++-+..|
T Consensus 251 fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~k 308 (335)
T KOG2922|consen 251 FNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTK 308 (335)
T ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeec
Confidence 34444555555556778999999999983 4444 4667778888887754443
No 101
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=34.47 E-value=1.9e+02 Score=21.38 Aligned_cols=123 Identities=16% Similarity=0.120 Sum_probs=63.2
Q ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---H-HHHHH-HHhchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041827 2 DIPAWALRTVLQGILLSKVNSMNLLMYMAPVAAI---F-LIPAV-LIMEKDVVGITIALAKQDVEFLWYLIFNSSLAYFV 76 (138)
Q Consensus 2 a~~~~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~---~-l~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (138)
++.+.|++-+.-|....+-|--+...+++..++. + -+|.. +...+- ++++... ..+|..+...+.+...+
T Consensus 143 SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~V---E~~qsFA--~~PWG~l~G~A~L~lAF 217 (290)
T KOG4314|consen 143 SAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGV---EHLQSFA--AAPWGCLCGAAGLSLAF 217 (290)
T ss_pred HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhch---HHHHHHh--hCCchhhhhHHHHHHHH
Confidence 4566777888888877644433344444444433 2 12221 111111 2233211 11244555555555556
Q ss_pred HHHHHH---hhhhhHHhhhhhhhhHHHHHhHHHhhCc-cccchhhhhHHHHHHHHHHH
Q 041827 77 KLTNFL---HTMCVWLSSSWKCKGAIAVVVSILIFRN-LVYITGMSGYTLTIIGVILY 130 (138)
Q Consensus 77 n~~~f~---~tsalt~sv~~~~k~v~~i~~s~~~f~~-~~t~~~~~G~~l~~~Gv~~Y 130 (138)
|+..-. .+.|+-.|+-... .+-.-..--++|+| ..+.....|.++..+|.++.
T Consensus 218 N~~iN~GiaL~~PilISiG~l~-~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLi 274 (290)
T KOG4314|consen 218 NFLINFGIALLNPILISIGMLC-GIPGNAAIDILFQELEFNTLFLAATCIICIGFILI 274 (290)
T ss_pred hhheeehhhhhchhhheehhee-cCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHhe
Confidence 665554 6777766653222 11111222345555 57778888999999988764
No 102
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=32.83 E-value=1.9e+02 Score=24.11 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHH-H--HHHHHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHH
Q 041827 63 LWYLIFNSSLAYF-V--KLTNFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTII 125 (138)
Q Consensus 63 ~~~~~~~~~~~~~-~--n~~~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~ 125 (138)
...-+.+|+.|++ . -...||+.--+..++.-.+ .++.++...-.+|-.+|.-.+.|+++++.
T Consensus 342 i~~gi~Agl~g~~~V~vfm~~~Yr~~Gvia~ial~~-n~~lil~vls~lgatLtLpgIAGiILtIG 406 (506)
T COG0342 342 IKAGLIAGLIGLALVAVFMLLYYRLAGVIAAIALGL-NGVLILAVLSLLGATLTLPGIAGIILTIG 406 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHhcccccchhhhHHHHhhh
Confidence 3445566666665 2 2233334333444444444 66666666666788999999999988763
No 103
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=32.69 E-value=28 Score=26.90 Aligned_cols=48 Identities=8% Similarity=0.063 Sum_probs=39.5
Q ss_pred HhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhhhh
Q 041827 89 LSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAKKQ 136 (138)
Q Consensus 89 ~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k~~ 136 (138)
+-|.-.--.+....+++++.|.+-+.+|+....+..+|++.-+..+.+
T Consensus 94 HiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~ 141 (330)
T KOG1583|consen 94 HIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSK 141 (330)
T ss_pred EEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCc
Confidence 344555567788899999999999999999999999999987766543
No 104
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=28.73 E-value=2.5e+02 Score=21.04 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=14.4
Q ss_pred cchhhhhHHHHHHHHHHHhh
Q 041827 113 YITGMSGYTLTIIGVILYKE 132 (138)
Q Consensus 113 t~~~~~G~~l~~~Gv~~Y~~ 132 (138)
++.-+....+.++|.+||..
T Consensus 68 ~~~~~~~~~l~~~Gglwy~~ 87 (284)
T PF12805_consen 68 GPEALEHALLFLAGGLWYLL 87 (284)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 44556677788888888864
No 105
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=27.63 E-value=2.9e+02 Score=21.26 Aligned_cols=68 Identities=22% Similarity=0.168 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhhhHHhhhhhhhhHHHHHhHHHhhCccc--cchhhhhHHHHHHHHHHHhhh
Q 041827 61 EFLWYLIFNSSLAYFVKLTNFL-HTMCVWLSSSWKCKGAIAVVVSILIFRNLV--YITGMSGYTLTIIGVILYKEA 133 (138)
Q Consensus 61 ~~~~~~~~~~~~~~~~n~~~f~-~tsalt~sv~~~~k~v~~i~~s~~~f~~~~--t~~~~~G~~l~~~Gv~~Y~~~ 133 (138)
......+-+|+.+..-.+.... -..-++..+ .+.++-++.++.||.+ +..-+....-+++|.+.|...
T Consensus 182 ~~~Gl~lSNalvAl~GAL~AQ~~GfADVsmGi-----G~iVvGLAavIIGe~i~~~r~~~~~lla~viGsI~Yr~~ 252 (293)
T COG4120 182 TILGLALSNALVALAGALFAQTNGFADVSMGI-----GTIVVGLAAVIIGETIFGSRRLLLALLAVVIGSILYRFA 252 (293)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhcccchhccCc-----chhhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777776666665 333455555 5555666666667652 345677888889999999653
No 106
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=26.64 E-value=61 Score=18.82 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHhhhhhh
Q 041827 117 MSGYTLTIIGVILYKEAKKQ 136 (138)
Q Consensus 117 ~~G~~l~~~Gv~~Y~~~k~~ 136 (138)
.+=+.+.++|+++|.+.+.+
T Consensus 15 t~~~~l~fiavi~~ayr~~~ 34 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 34456788888888777654
No 107
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.61 E-value=3.3e+02 Score=21.32 Aligned_cols=122 Identities=17% Similarity=0.110 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhcCCC-HHH--HHHHHHHHHHHHHHHHHHH--hchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 041827 4 PAWALRTVLQGILLSKVN-SMN--LLMYMAPVAAIFLIPAVLI--MEKDVVGITIALAKQDVEFLWYLIFNSSLAYFVKL 78 (138)
Q Consensus 4 ~~~a~~~v~~k~~l~~~~-~~~--l~~~~~~~~~~~l~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 78 (138)
+++.+-.+.-|..+++.+ |.+ ++.+++..+++.+...-.. .|.+.+ .+...+.+ ++.-++..+.+......
T Consensus 22 ~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l--~~~~~kk~--~P~~~lf~~~i~t~~~s 97 (314)
T KOG1444|consen 22 LSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPL--DLRTAKKW--FPVSLLFVGMLFTGSKS 97 (314)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCc--ChHHHHHH--ccHHHHHHHHHHHcccc
Confidence 445555666777776322 333 3347777776655554321 222211 11112222 11111211111111111
Q ss_pred HHHHhhhhhHHhhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHh
Q 041827 79 TNFLHTMCVWLSSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYK 131 (138)
Q Consensus 79 ~~f~~tsalt~sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~ 131 (138)
.. +.+-=.+.+..+..++++.+....+||-+.+..-+.......+|...+.
T Consensus 98 lk--~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 98 LK--YLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred cc--ccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 11 4555566788888899999999999998888888888888888877654
No 108
>PRK11562 nitrite transporter NirC; Provisional
Probab=24.06 E-value=55 Score=24.82 Aligned_cols=26 Identities=12% Similarity=-0.038 Sum_probs=20.9
Q ss_pred cccchhhhhHHHHHHHHHHHhhhhhh
Q 041827 111 LVYITGMSGYTLTIIGVILYKEAKKQ 136 (138)
Q Consensus 111 ~~t~~~~~G~~l~~~Gv~~Y~~~k~~ 136 (138)
|.+.-|++|..+-+...++|.+.|++
T Consensus 228 pvtLGNivGG~v~vg~~y~~~~~~~~ 253 (268)
T PRK11562 228 WVTLGNTLSGAVFMGLGYWYATPKAN 253 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 56778999999888888888776654
No 109
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=24.00 E-value=3.3e+02 Score=20.75 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=19.9
Q ss_pred cccchhhhhHHHHHHHHHHHhhhhhh
Q 041827 111 LVYITGMSGYTLTIIGVILYKEAKKQ 136 (138)
Q Consensus 111 ~~t~~~~~G~~l~~~Gv~~Y~~~k~~ 136 (138)
|.+.-|++|..+.+.-.++|-+.|.+
T Consensus 236 pv~lGNivGG~v~vgl~Y~~~~~~~~ 261 (265)
T COG2116 236 PVTLGNIVGGAVFVGLMYWYLYRKQN 261 (265)
T ss_pred HHHHhchhcchhhhhHHHHHhccccc
Confidence 56777899998888878888776654
No 110
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.76 E-value=90 Score=20.82 Aligned_cols=12 Identities=25% Similarity=0.301 Sum_probs=6.2
Q ss_pred HHHHhhhhhhcC
Q 041827 127 VILYKEAKKQSK 138 (138)
Q Consensus 127 v~~Y~~~k~~~k 138 (138)
.+.|...|+|.|
T Consensus 83 li~y~irR~~Kk 94 (122)
T PF01102_consen 83 LISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHS--
T ss_pred HHHHHHHHHhcc
Confidence 456766666554
No 111
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=22.72 E-value=41 Score=21.39 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=11.2
Q ss_pred CccccchhhhhHHHHHHHHHHHhhh
Q 041827 109 RNLVYITGMSGYTLTIIGVILYKEA 133 (138)
Q Consensus 109 ~~~~t~~~~~G~~l~~~Gv~~Y~~~ 133 (138)
++++|...+.|. ++|+++|+..
T Consensus 58 kN~is~a~i~al---ViaIY~YTfY 79 (108)
T KOG4782|consen 58 KNHISFAGIGAL---VIAIYGYTFY 79 (108)
T ss_pred hhhhhhHHHHHH---HHHhhhheee
Confidence 345555555554 4555555543
No 112
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=22.39 E-value=85 Score=18.10 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.9
Q ss_pred hhhhhHHHHHHHHHHHhh
Q 041827 115 TGMSGYTLTIIGVILYKE 132 (138)
Q Consensus 115 ~~~~G~~l~~~Gv~~Y~~ 132 (138)
.-++|..+.++|..+|..
T Consensus 8 ~~~~ggfVg~iG~a~Ypi 25 (58)
T PF15061_consen 8 ALFVGGFVGLIGAALYPI 25 (58)
T ss_pred hhhHHHHHHHHHHHHhhh
Confidence 457889999999999964
No 113
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=21.16 E-value=95 Score=23.39 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=17.6
Q ss_pred ccchhhhhHHHHHHHHHHHhhh
Q 041827 112 VYITGMSGYTLTIIGVILYKEA 133 (138)
Q Consensus 112 ~t~~~~~G~~l~~~Gv~~Y~~~ 133 (138)
+|..|+++..+.+.|+....+.
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~ 256 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYR 256 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999998765433
No 114
>PF08552 Kei1: Inositolphosphorylceramide synthase subunit Kei1; InterPro: IPR013862 This entry indicates Golgi proteins of unknown function.
Probab=21.05 E-value=3.2e+02 Score=19.57 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 041827 6 WALRTVLQGILLSKVNSMNLLMYMAPVAAIFLIPAV 41 (138)
Q Consensus 6 ~a~~~v~~k~~l~~~~~~~l~~~~~~~~~~~l~~~~ 41 (138)
.++++++.=..-.++|++|+..|..-+..+.+....
T Consensus 26 sG~YGlLAlfTG~~ls~~Q~s~YlySi~~L~~~~~~ 61 (189)
T PF08552_consen 26 SGLYGLLALFTGHPLSFLQLSMYLYSILALVLFAWG 61 (189)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455555543332278999999999976665555544
No 115
>PRK02935 hypothetical protein; Provisional
Probab=20.31 E-value=2.6e+02 Score=18.23 Aligned_cols=12 Identities=0% Similarity=-0.111 Sum_probs=6.4
Q ss_pred hhhhhHHhhhhh
Q 041827 83 HTMCVWLSSSWK 94 (138)
Q Consensus 83 ~tsalt~sv~~~ 94 (138)
+.|+.-+.+...
T Consensus 34 ~~~~~~m~ifm~ 45 (110)
T PRK02935 34 RESIIIMTIFML 45 (110)
T ss_pred cccHHHHHHHHH
Confidence 556555555433
Done!