Query 041827
Match_columns 138
No_of_seqs 147 out of 1050
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 19:01:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.1 1.1E-05 3.7E-10 54.0 6.5 52 83-134 53-105 (137)
2 3b5d_A Multidrug transporter E 97.9 8.7E-05 3E-09 47.7 8.4 45 90-134 61-105 (110)
3 2h3o_A MERF; membrane protein, 64.9 2.5 8.5E-05 23.8 1.1 44 94-137 11-56 (61)
4 2l2t_A Receptor tyrosine-prote 39.4 28 0.00097 18.1 2.6 15 121-135 24-38 (44)
5 2ks1_B Epidermal growth factor 37.7 31 0.0011 17.9 2.6 11 124-134 28-38 (44)
6 3kcu_A Probable formate transp 22.8 2.2E+02 0.0076 20.6 10.3 28 111-138 257-284 (285)
7 1waz_A MERF; protein structure 22.1 96 0.0033 16.2 2.9 40 97-136 2-43 (46)
8 2k21_A Potassium voltage-gated 14.3 1.2E+02 0.0042 19.5 2.5 11 128-138 72-82 (138)
9 3arc_T Photosystem II reaction 13.0 1.3E+02 0.0045 14.4 1.8 13 101-113 16-28 (32)
10 3l1l_A Arginine/agmatine antip 12.7 1.8E+02 0.006 21.6 3.5 21 116-136 410-430 (445)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.06 E-value=1.1e-05 Score=54.03 Aligned_cols=52 Identities=12% Similarity=0.027 Sum_probs=34.4
Q ss_pred hhhhhHHhhh-hhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhh
Q 041827 83 HTMCVWLSSS-WKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAK 134 (138)
Q Consensus 83 ~tsalt~sv~-~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k 134 (138)
+.++-....+ ..+-|++++++|+++|||++|+.+++|+++.+.|++..+..+
T Consensus 53 ~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 53 YIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3333333333 678899999999999999999999999999999999987643
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.91 E-value=8.7e-05 Score=47.67 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=40.1
Q ss_pred hhhhhhhhHHHHHhHHHhhCccccchhhhhHHHHHHHHHHHhhhh
Q 041827 90 SSSWKCKGAIAVVVSILIFRNLVYITGMSGYTLTIIGVILYKEAK 134 (138)
Q Consensus 90 sv~~~~k~v~~i~~s~~~f~~~~t~~~~~G~~l~~~Gv~~Y~~~k 134 (138)
.+...+-++.+.++|+++|||++|+.+++|+.+.+.|+...+..+
T Consensus 61 ~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 61 AIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 343678899999999999999999999999999999999987654
No 3
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=64.91 E-value=2.5 Score=23.84 Aligned_cols=44 Identities=11% Similarity=0.224 Sum_probs=23.6
Q ss_pred hhhhHHHHHhHHHhhCccccchh--hhhHHHHHHHHHHHhhhhhhc
Q 041827 94 KCKGAIAVVVSILIFRNLVYITG--MSGYTLTIIGVILYKEAKKQS 137 (138)
Q Consensus 94 ~~k~v~~i~~s~~~f~~~~t~~~--~~G~~l~~~Gv~~Y~~~k~~~ 137 (138)
...|++++++|..=...-+++.. .+=..-.++|..+|...|+|+
T Consensus 11 C~tPvLvil~G~~Glsa~~~wLd~vl~P~l~~figl~~Y~~~r~~~ 56 (61)
T 2h3o_A 11 SFTPVLVILLGVVGLSALTGYLDYVLLPALAIFIGLTIYAIQRKRQ 56 (61)
T ss_dssp -----CHHHHHHHHHHHHHHHSSSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34577777666665544444443 122334455999998888764
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=39.42 E-value=28 Score=18.08 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhhhhh
Q 041827 121 TLTIIGVILYKEAKK 135 (138)
Q Consensus 121 ~l~~~Gv~~Y~~~k~ 135 (138)
++...+.++|-..|+
T Consensus 24 ~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhh
Confidence 333344444444443
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=37.71 E-value=31 Score=17.88 Aligned_cols=11 Identities=18% Similarity=0.528 Sum_probs=4.3
Q ss_pred HHHHHHHhhhh
Q 041827 124 IIGVILYKEAK 134 (138)
Q Consensus 124 ~~Gv~~Y~~~k 134 (138)
..+.++|-..|
T Consensus 28 ~~~~~~~~RRr 38 (44)
T 2ks1_B 28 ALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhhhh
Confidence 33334444333
No 6
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=22.76 E-value=2.2e+02 Score=20.64 Aligned_cols=28 Identities=14% Similarity=-0.012 Sum_probs=20.0
Q ss_pred cccchhhhhHHHHHHHHHHHhhhhhhcC
Q 041827 111 LVYITGMSGYTLTIIGVILYKEAKKQSK 138 (138)
Q Consensus 111 ~~t~~~~~G~~l~~~Gv~~Y~~~k~~~k 138 (138)
|.+.-|++|..+-+...++|.+.|..+|
T Consensus 257 pvtlGNiIGG~~fvgl~y~~~~~~~~~~ 284 (285)
T 3kcu_A 257 PVTIGNIIGGGLLVGLTYWVIYLRENDH 284 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccC
Confidence 6777799999888888888888776543
No 7
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=22.08 E-value=96 Score=16.15 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=24.4
Q ss_pred hHHHHHhHHHhhCccccchh--hhhHHHHHHHHHHHhhhhhh
Q 041827 97 GAIAVVVSILIFRNLVYITG--MSGYTLTIIGVILYKEAKKQ 136 (138)
Q Consensus 97 ~v~~i~~s~~~f~~~~t~~~--~~G~~l~~~Gv~~Y~~~k~~ 136 (138)
|+.+++++.+=+..-+.+.. .+=....++|...|...|++
T Consensus 2 PvLViL~g~vGLsa~vgyLDyVLlPaLa~Fi~lt~ya~~r~~ 43 (46)
T 1waz_A 2 PVLVILLGVVGLSALTGYLDYVLLPALAIFIGLTIYAIQRKR 43 (46)
T ss_dssp HHHHHHHHHHHHHHCCSCCCCCSCCHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655544444432 34456678888888777754
No 8
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=14.29 E-value=1.2e+02 Score=19.53 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=7.3
Q ss_pred HHHhhhhhhcC
Q 041827 128 ILYKEAKKQSK 138 (138)
Q Consensus 128 ~~Y~~~k~~~k 138 (138)
+-|.+.|++||
T Consensus 72 LsYiRSKk~E~ 82 (138)
T 2k21_A 72 LSYIRSKKLEH 82 (138)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHhHhhhccc
Confidence 34777777765
No 9
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=13.03 E-value=1.3e+02 Score=14.39 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=7.8
Q ss_pred HHhHHHhhCcccc
Q 041827 101 VVVSILIFRNLVY 113 (138)
Q Consensus 101 i~~s~~~f~~~~t 113 (138)
++.-.++|+||..
T Consensus 16 iiFFAI~FRePPr 28 (32)
T 3arc_T 16 LFFFAIFFREPPR 28 (32)
T ss_dssp HHHHHHHTSCCCC
T ss_pred HHHHhhhhcCCCC
Confidence 3455566777654
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=12.70 E-value=1.8e+02 Score=21.64 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=15.2
Q ss_pred hhhhHHHHHHHHHHHhhhhhh
Q 041827 116 GMSGYTLTIIGVILYKEAKKQ 136 (138)
Q Consensus 116 ~~~G~~l~~~Gv~~Y~~~k~~ 136 (138)
-..|..+...|..+|-..|+|
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 455788888898888766543
Done!