Query 041827
Match_columns 138
No_of_seqs 147 out of 1050
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 19:01:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041827.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041827hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 24.8 27 0.002 19.6 2.7 21 117-137 36-56 (100)
2 d3ehbb2 f.17.2.1 (B:1-107) Bac 20.4 36 0.0026 19.4 2.6 21 117-137 42-62 (107)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 19.4 15 0.0011 20.5 0.7 20 119-138 27-46 (91)
4 d1cola_ f.1.1.1 (A:) Colicin A 14.2 77 0.0056 20.3 3.3 21 109-130 162-182 (197)
5 d2axtj1 f.23.32.1 (J:7-40) Pho 12.5 69 0.005 14.3 1.8 11 121-131 15-25 (34)
6 d1n1ea1 a.100.1.6 (A:198-357) 10.8 78 0.0057 19.1 2.4 23 85-107 2-24 (160)
7 d2e74g1 f.23.26.1 (G:9-35) Pet 7.3 1.1E+02 0.0079 12.6 2.4 14 118-131 3-16 (27)
8 d1ppjd2 f.23.11.1 (D:196-241) 6.8 1.6E+02 0.011 14.0 2.5 20 114-133 10-29 (46)
9 d1c8za_ d.23.1.1 (A:) Transcri 6.6 96 0.007 20.7 1.5 18 108-125 241-258 (265)
10 d1a87a_ f.1.1.1 (A:) Colicin N 5.6 3.4E+02 0.025 18.2 4.0 14 109-122 259-272 (297)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=24.79 E-value=27 Score=19.61 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHHhhhhhhc
Q 041827 117 MSGYTLTIIGVILYKEAKKQS 137 (138)
Q Consensus 117 ~~G~~l~~~Gv~~Y~~~k~~~ 137 (138)
..++.+.+.|...|...|+|.
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~ 56 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHE 56 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHHHHHHhhhhhc
Confidence 345556677778887776653
No 2
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=20.44 E-value=36 Score=19.41 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHhhhhhhc
Q 041827 117 MSGYTLTIIGVILYKEAKKQS 137 (138)
Q Consensus 117 ~~G~~l~~~Gv~~Y~~~k~~~ 137 (138)
..++.+.+.|...|...|+|.
T Consensus 42 ~~~I~~~V~~~~~~~~~~~r~ 62 (107)
T d3ehbb2 42 ITAVTIFVCLLLLICIVRFNR 62 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHSBT
T ss_pred HHHHHHHHHHHHHHHhhhhhc
Confidence 344455567777777766553
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=19.39 E-value=15 Score=20.50 Aligned_cols=20 Identities=10% Similarity=-0.137 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHhhhhhhcC
Q 041827 119 GYTLTIIGVILYKEAKKQSK 138 (138)
Q Consensus 119 G~~l~~~Gv~~Y~~~k~~~k 138 (138)
.+.+.+.|.+.|...|+|+|
T Consensus 27 iv~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 27 IVVIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp TTTTHHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHhhheeeecc
Confidence 34456777888888777643
No 4
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=14.24 E-value=77 Score=20.32 Aligned_cols=21 Identities=19% Similarity=0.077 Sum_probs=12.5
Q ss_pred CccccchhhhhHHHHHHHHHHH
Q 041827 109 RNLVYITGMSGYTLTIIGVILY 130 (138)
Q Consensus 109 ~~~~t~~~~~G~~l~~~Gv~~Y 130 (138)
+-|.|+..++|+ +.+..+-.|
T Consensus 162 g~~~~~iGI~g~-li~~~v~al 182 (197)
T d1cola_ 162 GVPAIAVGIAGI-LLAAVVGAL 182 (197)
T ss_dssp CSCHHHHHHHHH-HHHHHHHHH
T ss_pred cccccHHHHHHH-HHHHHHHHH
Confidence 557777777777 444444333
No 5
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.46 E-value=69 Score=14.28 Aligned_cols=11 Identities=27% Similarity=0.848 Sum_probs=7.8
Q ss_pred HHHHHHHHHHh
Q 041827 121 TLTIIGVILYK 131 (138)
Q Consensus 121 ~l~~~Gv~~Y~ 131 (138)
++.++|++.|-
T Consensus 15 vi~~vG~FfYG 25 (34)
T d2axtj1 15 VIVIVGLFFYG 25 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred hHhheeeeeee
Confidence 46678888874
No 6
>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Probab=10.81 E-value=78 Score=19.10 Aligned_cols=23 Identities=13% Similarity=-0.024 Sum_probs=16.7
Q ss_pred hhhHHhhhhhhhhHHHHHhHHHh
Q 041827 85 MCVWLSSSWKCKGAIAVVVSILI 107 (138)
Q Consensus 85 salt~sv~~~~k~v~~i~~s~~~ 107 (138)
.....-+.+.+|++..+..++.-
T Consensus 2 D~~GvE~~galKNi~Aia~Gi~~ 24 (160)
T d1n1ea1 2 DTVGCEVASAVKNVLAIGSGVAN 24 (160)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHH
Confidence 34556678888888888777754
No 7
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.31 E-value=1.1e+02 Score=12.60 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHh
Q 041827 118 SGYTLTIIGVILYK 131 (138)
Q Consensus 118 ~G~~l~~~Gv~~Y~ 131 (138)
+|..++.+|-+.|.
T Consensus 3 lgli~~tl~glf~a 16 (27)
T d2e74g1 3 LGLVFATLGGLFYA 16 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHH
Confidence 56666555555553
No 8
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.80 E-value=1.6e+02 Score=13.99 Aligned_cols=20 Identities=5% Similarity=-0.159 Sum_probs=13.0
Q ss_pred chhhhhHHHHHHHHHHHhhh
Q 041827 114 ITGMSGYTLTIIGVILYKEA 133 (138)
Q Consensus 114 ~~~~~G~~l~~~Gv~~Y~~~ 133 (138)
...++.+...+.+..+|...
T Consensus 10 G~Kv~~~l~~l~~l~yy~KR 29 (46)
T d1ppjd2 10 GLKMLLMMGLLLPLVYAMKR 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777543
No 9
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.60 E-value=96 Score=20.69 Aligned_cols=18 Identities=6% Similarity=0.030 Sum_probs=14.0
Q ss_pred hCccccchhhhhHHHHHH
Q 041827 108 FRNLVYITGMSGYTLTII 125 (138)
Q Consensus 108 f~~~~t~~~~~G~~l~~~ 125 (138)
++.|+++.|.+|++++-.
T Consensus 241 ~~~Pls~~qaF~i~lssf 258 (265)
T d1c8za_ 241 YNYPLCALQAFAIALSSF 258 (265)
T ss_dssp ECTTCCHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHh
Confidence 467888999998888754
No 10
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=5.64 E-value=3.4e+02 Score=18.17 Aligned_cols=14 Identities=21% Similarity=0.112 Sum_probs=7.5
Q ss_pred CccccchhhhhHHH
Q 041827 109 RNLVYITGMSGYTL 122 (138)
Q Consensus 109 ~~~~t~~~~~G~~l 122 (138)
+-|++...+.|+.+
T Consensus 259 glpvtilG~agImi 272 (297)
T d1a87a_ 259 GLAVTALGVIGIMT 272 (297)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHH
Confidence 45555555555544
Done!