BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041828
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H8N|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment From Phage-Displayed Murine Antibody
Libraries
Length = 252
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 56 VGLITERARDTPTAEYSSKQQPAENNELLAFWATFFMLHLGGPDTITA 103
V + + ++D TA +Q+P ++ +LL +WA+ H G PD T
Sbjct: 22 VSITCKASQDVGTAVAWYQQKPGQSPKLLIYWAS--TRHTGVPDRFTG 67
>pdb|1I3G|L Chain L, Crystal Structure Of An Ampicillin Single Chain Fv, Form
1, Free
Length = 111
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 56 VGLITERARDTPTAEYSSKQQPAENNELLAFWATFFMLHLGGPDTITA 103
V + + ++D TA +Q+P ++ +LL +WA+ H G PD T
Sbjct: 22 VSITCKASQDVGTAVAWYQQKPGQSPKLLIYWAS--TRHTGVPDRFTG 67
>pdb|1H8O|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment.
pdb|1H8O|B Chain B, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment.
pdb|1H8S|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment Complexed With The Hapten.
pdb|1H8S|B Chain B, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment Complexed With The Hapten
Length = 252
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 56 VGLITERARDTPTAEYSSKQQPAENNELLAFWATFFMLHLGGPDTITA 103
V + + ++D TA +Q+P ++ +LL +WA+ H G PD T
Sbjct: 22 VSITCKASQDVGTAVAWYQQKPGQSPKLLIYWAS--TRHTGVPDRFTG 67
>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp
pdb|3GU5|A Chain A, Crystal Structure Of Dapkq23v-Amppnp-Mg2+
pdb|3GU6|A Chain A, Crystal Structure Of Dapkq23v-Adp
pdb|3GU7|A Chain A, Crystal Structure Of Dapkq23v-Adp-Mg2+
Length = 295
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 170 RDSALRGEVEHLKRIRSLQKKNEKALGIIEVELNLVYEVLHTKIQVTHSVLAIILRFICF 229
+ + L+ + +K+ R+ + + IE E++++ E+ H + H V I
Sbjct: 33 KSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILI 92
Query: 230 CSVVAALSVFHFQVEKHGFNE 250
+VA +F F EK E
Sbjct: 93 LELVAGGELFDFLAEKESLTE 113
>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase
In Complex With Amppnp And Mg2+
Length = 295
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 170 RDSALRGEVEHLKRIRSLQKKNEKALGIIEVELNLVYEVLHTKIQVTHSVLAIILRFICF 229
+ + L+ + +K+ R+ + + IE E++++ E+ H + H V I
Sbjct: 33 KSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILI 92
Query: 230 CSVVAALSVFHFQVEKHGFNE 250
+VA +F F EK E
Sbjct: 93 LELVAGGELFDFLAEKESLTE 113
>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With
Bound Inhibitor Fragment
Length = 293
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 170 RDSALRGEVEHLKRIRSLQKKNEKALGIIEVELNLVYEVLHTKIQVTHSVLAIILRFICF 229
+ + L+ + +K+ R+ + + IE E++++ E+ H + H V I
Sbjct: 32 KSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILI 91
Query: 230 CSVVAALSVFHFQVEKHGFNE 250
+VA +F F EK E
Sbjct: 92 LELVAGGELFDFLAEKESLTE 112
>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain With
Amppnp
pdb|3DGK|A Chain A, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain
Length = 295
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 170 RDSALRGEVEHLKRIRSLQKKNEKALGIIEVELNLVYEVLHTKIQVTHSVLAIILRFICF 229
+ + L+ + +K+ R+ + + IE E++++ E+ H + H V I
Sbjct: 33 KSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILI 92
Query: 230 CSVVAALSVFHFQVEKHGFNE 250
+VA +F F EK E
Sbjct: 93 LELVAGGELFDFLAEKESLTE 113
>pdb|1J00|A Chain A, E. Coli Thioesterase I/protease I/lysophospholipase L1 In
Complexed With Diethyl Phosphono Moiety
Length = 190
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 31 ATGNKLIISVIWSAYLIADWAANFGVGLITERARDTPTAEYSSKQQPAENNELLAFWATF 90
+ G ++ S W A L W + V + T++ + PA + W
Sbjct: 12 SAGYRMSASAAWPALLNDKWQSKTSV---VNASISGDTSQQGLARLPALLKQHQPRW--- 65
Query: 91 FMLHLGGPDTITAFALEDNELCLRHLFGFIFQAVAAVYIFLTSLPGN 137
++ LGG D + F + E LR + + A A + LP N
Sbjct: 66 VLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPAN 112
>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg.
pdb|3F5G|A Chain A, Crystal Structure Of Death Associated Protein Kinase In
Complex With Adp And Mg2+
pdb|3EH9|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Adp
pdb|3EHA|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Amppnp
Length = 294
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 170 RDSALRGEVEHLKRIRSLQKKNEKALGIIEVELNLVYEVLHTKIQVTHSVLAIILRFICF 229
+ + L+ + +K+ R+ + + IE E++++ E+ H + H V I
Sbjct: 32 KSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILI 91
Query: 230 CSVVAALSVFHFQVEKHGFNE 250
+VA +F F EK E
Sbjct: 92 LELVAGGELFDFLAEKESLTE 112
>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine
pdb|3GUB|A Chain A, Crystal Structure Of Dapkl93g Complexed With N6-(2-
Phenylethyl)adenosine
Length = 295
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 170 RDSALRGEVEHLKRIRSLQKKNEKALGIIEVELNLVYEVLHTKIQVTHSVLAIILRFICF 229
+ + L+ + +K+ R+ + + IE E++++ E+ H + H V I
Sbjct: 33 KSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILI 92
Query: 230 CSVVAALSVFHFQVEKHGFNE 250
+VA +F F EK E
Sbjct: 93 GELVAGGELFDFLAEKESLTE 113
>pdb|1IVN|A Chain A, E.Coli Thioesterase IPROTEASE ILYSOPHOSPHOLIASE L1
pdb|1U8U|A Chain A, E. Coli Thioesterase IPROTEASE ILYSOPHOSPHOLIASE L1 IN
COMPLEXED With Octanoic Acid
Length = 190
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 31 ATGNKLIISVIWSAYLIADWAANFGVGLITERARDTPTAEYSSKQQPAENNELLAFWATF 90
+ G ++ S W A L W + V + T++ + PA + W
Sbjct: 12 SAGYRMSASAAWPALLNDKWQSKTSV---VNASISGDTSQQGLARLPALLKQHQPRW--- 65
Query: 91 FMLHLGGPDTITAFALEDNELCLRHLFGFIFQAVAAVYIFLTSLPGN 137
++ LGG D + F + E LR + + A A + LP N
Sbjct: 66 VLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPAN 112
>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVX|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVY|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
Length = 278
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 170 RDSALRGEVEHLKRIRSLQKKNEKALGIIEVELNLVYEVLHTKIQVTHSVLAIILRFICF 229
+ + L+ + +K+ R+ + + IE E++++ E+ H + H V I
Sbjct: 33 KSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILI 92
Query: 230 CSVVAALSVFHFQVEKHGFNE 250
+VA +F F EK E
Sbjct: 93 LELVAGGELFDFLAEKESLTE 113
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 170 RDSALRGEVEHLKRIRSLQKKNEKALGIIEVELNLVYEVLHTKIQVTHSVLAIILRFICF 229
+ + L+ + +K+ R+ + + IE E++++ E+ H + H V I
Sbjct: 33 KSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILI 92
Query: 230 CSVVAALSVFHFQVEKHGFNE 250
+VA +F F EK E
Sbjct: 93 LELVAGGELFDFLAEKESLTE 113
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 170 RDSALRGEVEHLKRIRSLQKKNEKALGIIEVELNLVYEVLHTKIQVTHSVLAIILRFICF 229
+ + L+ + +K+ R+ + + IE E++++ E+ H + H V I
Sbjct: 33 KSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILI 92
Query: 230 CSVVAALSVFHFQVEKHGFNE 250
+VA +F F EK E
Sbjct: 93 LELVAGGELFDFLAEKESLTE 113
>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In
Complex With A Ruthenium Octasporine Ligand (Osv)
pdb|2Y4P|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|3ZXT|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
Length = 285
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 170 RDSALRGEVEHLKRIRSLQKKNEKALGIIEVELNLVYEVLHTKIQVTHSVLAIILRFICF 229
+ + L+ + +K+ R+ + + IE E++++ E+ H + H V I
Sbjct: 33 KSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILI 92
Query: 230 CSVVAALSVFHFQVEKHGFNE 250
+VA +F F EK E
Sbjct: 93 LELVAGGELFDFLAEKESLTE 113
>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302
Length = 302
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 170 RDSALRGEVEHLKRIRSLQKKNEKALGIIEVELNLVYEVLHTKIQVTHSVLAIILRFICF 229
+ + L+ + +K+ R+ + + IE E++++ E+ H + H V I
Sbjct: 33 KSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILI 92
Query: 230 CSVVAALSVFHFQVEKHGFNE 250
+VA +F F EK E
Sbjct: 93 LELVAGGELFDFLAEKESLTE 113
>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant
Length = 334
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 170 RDSALRGEVEHLKRIRSLQKKNEKALGIIEVELNLVYEVLHTKIQVTHSVLAIILRFICF 229
+ + L+ + +K+ R+ + + IE E++++ E+ H + H V I
Sbjct: 33 KSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILI 92
Query: 230 CSVVAALSVFHFQVEKHGFNE 250
+VA +F F EK E
Sbjct: 93 LELVAGGELFDFLAEKESLTE 113
>pdb|1NCA|L Chain L, Refined Crystal Structure Of The Influenza Virus N9
Neuraminidase-Nc41 Fab Complex
pdb|1NCB|L Chain L, Crystal Structures Of Two Mutant Neuraminidase-Antibody
Complexes With Amino Acid Substitutions In The Interface
pdb|1NCC|L Chain L, Crystal Structures Of Two Mutant Neuraminidase-Antibody
Complexes With Amino Acid Substitutions In The Interface
pdb|1NCD|L Chain L, Refined Crystal Structure Of The Influenza Virus N9
Neuraminidase-Nc41 Fab Complex
Length = 214
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 17/75 (22%)
Query: 56 VGLITERARDTPTAEYSSKQQPAENNELLAFWATFFMLHLGGPD-------------TIT 102
V + + ++D TA +Q+P ++ +LL +WA+ H+G PD TI+
Sbjct: 19 VTITCKASQDVSTAVVWYQQKPGQSPKLLIYWAS--TRHIGVPDRFAGSGSGTDYTLTIS 76
Query: 103 AFALEDNEL--CLRH 115
+ ED L C +H
Sbjct: 77 SVQAEDLALYYCQQH 91
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 170 RDSALRGEVEHLKRIRSLQKKNEKALGIIEVELNLVYEVLHTKIQVTHSVLAIILRFICF 229
+ + L+ + +K+ R+ + + IE E++++ E+ H + H V I
Sbjct: 33 KSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILI 92
Query: 230 CSVVAALSVFHFQVEKHGFNE 250
+VA +F F EK E
Sbjct: 93 LELVAGGELFDFLAEKESLTE 113
>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
pdb|2J90|B Chain B, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
Length = 304
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 198 IEVELNLVYEVLHTKIQVTHSVLAIILRFICFCSVVAALSVFHFQVEKHGFNE 250
IE E+N++ E+ H I H + + +V+ +F F EK E
Sbjct: 76 IEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTE 128
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With A Beta-Carboline Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With An Imidazo-Pyridazine Ligand
Length = 283
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 198 IEVELNLVYEVLHTKIQVTHSVLAIILRFICFCSVVAALSVFHFQVEKHGFNE 250
IE E+N++ E+ H I H + + +V+ +F F EK E
Sbjct: 55 IEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTE 107
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 170 RDSALRGEVEHLKRIRSLQKKNEKALGIIEVELNLVYEVLHTKIQVTHSVLAIILRFICF 229
+ + L+ + +K+ R+ + + IE E++++ E+ H + H V I
Sbjct: 33 KSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILI 92
Query: 230 CSVVAALSVFHFQVEKHGFNE 250
+VA +F F EK E
Sbjct: 93 LELVAGGELFDFLAEKESLTE 113
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 198 IEVELNLVYEVLHTKIQVTHSVLAIILRFICFCSVVAALSVFHFQVEKHGFNE 250
IE E+N++ E+ H I H + + +V+ +F F EK E
Sbjct: 62 IEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTE 114
>pdb|3S88|L Chain L, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Gulu) Bound To 16f6
pdb|3VE0|B Chain B, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Boniface) Bound To 16f6
Length = 212
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 24/111 (21%)
Query: 56 VGLITERARDTPTAEYSSKQQPAENNELLAFWATFFMLHLGGPD------TITAFALEDN 109
V + + ++D TA +Q+P + +LL +WA+ H G PD + TAF L N
Sbjct: 19 VTITCKASQDVTTAVAWYQQKPGHSPKLLIYWAS--TRHTGVPDRFTGSGSGTAFTLTLN 76
Query: 110 ELCLRHLFGFIFQAVAAVYIFLTSLPGNKLFFPTALVFIAGTIKYFERIRA 160
+ L + Q + T L F AGT +R A
Sbjct: 77 SVQAEDLALYYCQQ----------------HYSTPLTFGAGTKLELKRADA 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.141 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,391,251
Number of Sequences: 62578
Number of extensions: 318661
Number of successful extensions: 918
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 24
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)