BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041828
         (294 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q02LQ6|Y3721_PSEAB UPF0317 protein PA14_37210 OS=Pseudomonas aeruginosa (strain
           UCBPP-PA14) GN=PA14_37210 PE=3 SV=1
          Length = 265

 Score = 32.3 bits (72), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 71  YSSKQQPAENNELLAFWATFFMLHLGGPDTITAFALEDNELCLRHLFGFIFQAVAAVYIF 130
           +   Q+P E N++ AFW   F+    G       AL D  + LRHL   + + VA     
Sbjct: 96  HRRGQEPVEVNDIGAFWEADFVAFAIGCSFSFEQALLDAGIGLRHL--ELGRNVAMYRTA 153

Query: 131 LTSLPGNKLFFPTALVFIAGTIKYFERIRALYLAS 165
           + + P  +L  PT  V     +K  E IRA+ + S
Sbjct: 154 IATRPSGRLAGPT--VVSMRPLKAAEAIRAIQITS 186


>sp|A6V669|Y3193_PSEA7 UPF0317 protein PSPA7_3193 OS=Pseudomonas aeruginosa (strain PA7)
           GN=PSPA7_3193 PE=3 SV=1
          Length = 265

 Score = 31.6 bits (70), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 71  YSSKQQPAENNELLAFWATFFMLHLGGPDTITAFALEDNELCLRHLFGFIFQAVAAVYIF 130
           +   Q+P E N++ AFW   F+    G       AL D  + LRHL   + + VA     
Sbjct: 96  HRRGQEPVEVNDIGAFWEADFVAFAIGCSFSFEQALRDAGIGLRHL--ELGRNVAMYRSS 153

Query: 131 LTSLPGNKLFFPTALVFIAGTIKYFERIRALYLAS 165
           + + P  +L  PT  V     +K  + IRA+ + S
Sbjct: 154 IATRPSGRLAGPT--VVSMRPMKAADAIRAIQVTS 186


>sp|Q59PL9|EIF3A_CANAL Eukaryotic translation initiation factor 3 subunit A OS=Candida
           albicans (strain SC5314 / ATCC MYA-2876) GN=RPG1A PE=3
           SV=2
          Length = 930

 Score = 31.2 bits (69), Expect = 9.7,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 8/49 (16%)

Query: 175 RGEVEHLKRIRSLQKKNEK--------ALGIIEVELNLVYEVLHTKIQV 215
           R ++E L++ R L K+NEK        A GII+++LN + E+  TK+Q+
Sbjct: 668 RKKLEKLEKERELIKENEKRKIAEEINAKGIIKIDLNNLKELDTTKLQL 716


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.141    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,193,245
Number of Sequences: 539616
Number of extensions: 4096989
Number of successful extensions: 10795
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10795
Number of HSP's gapped (non-prelim): 4
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)