Query 041828
Match_columns 294
No_of_seqs 126 out of 391
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 19:02:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_v 60S acidic ribosomal pr 28.1 18 0.0006 28.5 0.9 21 88-108 5-25 (113)
2 2lbf_B 60S acidic ribosomal pr 21.3 26 0.0009 25.1 0.7 20 88-107 6-25 (70)
3 2knc_A Integrin alpha-IIB; tra 21.0 1.7E+02 0.0058 19.8 4.7 24 266-291 23-46 (54)
4 3izc_v 60S acidic ribosomal pr 20.1 30 0.001 26.8 0.8 20 88-108 5-24 (106)
5 3bp3_A Glucose-specific phosph 13.0 84 0.0029 22.8 1.7 18 88-105 7-24 (82)
6 2l8s_A Integrin alpha-1; trans 13.0 3.3E+02 0.011 18.4 4.7 24 266-291 20-43 (54)
7 1iba_A Glucose permease; phosp 8.0 1.3E+02 0.0043 22.9 1.1 18 88-105 16-33 (101)
8 3dwa_A SUBB, subtilase cytotox 6.3 1.6E+02 0.0053 23.4 0.8 24 100-123 41-64 (126)
9 2fly_A Proadrenomedullin N-20 6.2 3.4E+02 0.012 15.6 2.0 16 2-18 3-18 (26)
10 4ain_A Glycine betaine transpo 6.1 2.4E+02 0.0081 27.8 2.2 36 52-99 432-473 (539)
No 1
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=28.06 E-value=18 Score=28.49 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCCcceeecccc
Q 041828 88 ATFFMLHLGGPDTITAFALED 108 (294)
Q Consensus 88 ApfLLlhLGg~DtITAysleD 108 (294)
|..||+||||..++|+-.|+.
T Consensus 5 aAylL~~l~G~~~ptad~I~~ 25 (113)
T 3iz5_v 5 AAYLLAYLSGNASPSAEDLTS 25 (113)
T ss_dssp HHHHHHHHHTCCCCTTTTHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHH
Confidence 567999999999999876653
No 2
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=21.30 E-value=26 Score=25.08 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCCcceeeccc
Q 041828 88 ATFFMLHLGGPDTITAFALE 107 (294)
Q Consensus 88 ApfLLlhLGg~DtITAysle 107 (294)
+..||+|+||..++|+-.++
T Consensus 6 yA~Lll~~~g~~~~ta~~I~ 25 (70)
T 2lbf_B 6 ASYLLAALGGNSSPSAKDIK 25 (70)
T ss_dssp HHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHH
Confidence 45699999999999886654
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.04 E-value=1.7e+02 Score=19.81 Aligned_cols=24 Identities=13% Similarity=0.355 Sum_probs=15.1
Q ss_pred HHHHHHHHHHchHhHHHhhhcCCCCC
Q 041828 266 LDIIAFFKLVFSDWTFVALRNDDDKS 291 (294)
Q Consensus 266 LE~~s~~~~l~S~Wt~~~l~~~~~~~ 291 (294)
+-+..++.++. |-+.|+.|+++|.
T Consensus 23 LllL~li~~~L--wK~GFFkR~~~~~ 46 (54)
T 2knc_A 23 LLLLTILVLAM--WKVGFFKRNRPPL 46 (54)
T ss_dssp HHHHHHHHHHH--HHHHHTTTTCCSC
T ss_pred HHHHHHHHHHH--HHcCcccCCCCCc
Confidence 44444444444 8889997776654
No 4
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=20.14 E-value=30 Score=26.77 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCCcceeecccc
Q 041828 88 ATFFMLHLGGPDTITAFALED 108 (294)
Q Consensus 88 ApfLLlhLGg~DtITAysleD 108 (294)
|..||+|+||.+ ||+-.|+.
T Consensus 5 aAyLL~~~gG~e-~tad~I~~ 24 (106)
T 3izc_v 5 AAYLLLNAAGNT-PDATKIKA 24 (106)
T ss_dssp HHHHHHHHHTCC-CTTTTHHH
T ss_pred HHHHHHHhcCCC-CCHHHHHH
Confidence 567999999999 99876653
No 5
>3bp3_A Glucose-specific phosphotransferase enzyme IIB component; transcription regulation, inner membrane, kinase, membrane, phosphoprotein; 1.65A {Escherichia coli} PDB: 1o2f_B 3bp8_C
Probab=13.03 E-value=84 Score=22.79 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCCcceeec
Q 041828 88 ATFFMLHLGGPDTITAFA 105 (294)
Q Consensus 88 ApfLLlhLGg~DtITAys 105 (294)
|.-++-.+||.|||....
T Consensus 7 a~~ii~~lGG~~NI~~v~ 24 (82)
T 3bp3_A 7 APALVAAFGGKENITNLD 24 (82)
T ss_dssp HHHHHHHTTCGGGEEEEE
T ss_pred HHHHHHHhCCHHHHhhhc
Confidence 556788999999998753
No 6
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=13.03 E-value=3.3e+02 Score=18.37 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=15.0
Q ss_pred HHHHHHHHHHchHhHHHhhhcCCCCC
Q 041828 266 LDIIAFFKLVFSDWTFVALRNDDDKS 291 (294)
Q Consensus 266 LE~~s~~~~l~S~Wt~~~l~~~~~~~ 291 (294)
+.+..++.++. |-+.|+.|++++.
T Consensus 20 LLLL~Lii~~L--wK~GFFKR~~~~~ 43 (54)
T 2l8s_A 20 LLLLMLLILAL--WKIGFFKRPLKKK 43 (54)
T ss_dssp HHHHHHHHHHH--HHHHHTTSCCSCC
T ss_pred HHHHHHHHHHH--HHcCcccCCCcch
Confidence 44444444444 8888997777654
No 7
>1iba_A Glucose permease; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane, inner membrane, phoshphotransferase; NMR {Escherichia coli} SCOP: d.95.1.1
Probab=7.98 E-value=1.3e+02 Score=22.92 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCCcceeec
Q 041828 88 ATFFMLHLGGPDTITAFA 105 (294)
Q Consensus 88 ApfLLlhLGg~DtITAys 105 (294)
|.-++-.+||.|+|+...
T Consensus 16 A~~Ii~alGG~eNI~~v~ 33 (101)
T 1iba_A 16 APALVAAFGGKENITNLD 33 (101)
T ss_dssp HHHHTHHHHTCTTCSBCC
T ss_pred HHHHHHHhCCHHHHhhhc
Confidence 556888899999998753
No 8
>3dwa_A SUBB, subtilase cytotoxin, subunit B; HET: 1PE; 2.08A {Escherichia coli} PDB: 3dwp_A* 3dwq_A*
Probab=6.30 E-value=1.6e+02 Score=23.43 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.1
Q ss_pred cceeeccccccccchhhhhhheee
Q 041828 100 TITAFALEDNELCLRHLFGFIFQA 123 (294)
Q Consensus 100 tITAysleDn~lw~R~~l~l~~Qv 123 (294)
+++|.++.|+.-|++++-+++-|+
T Consensus 41 ~v~aCaV~~~s~~~~~Fd~~~~~A 64 (126)
T 3dwa_A 41 SISACSMKNSSVWGASFSTLYNQA 64 (126)
T ss_dssp EEEEEEETTCSSSGGGHHHHHHHH
T ss_pred ceeEEEEeccccccccHHHHHHHh
Confidence 588999999999999998877664
No 9
>2fly_A Proadrenomedullin N-20 terminal peptide; alpha helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=6.24 E-value=3.4e+02 Score=15.59 Aligned_cols=16 Identities=31% Similarity=0.993 Sum_probs=10.7
Q ss_pred CCCChhhHHHHHHHHHH
Q 041828 2 LNPTPESIKKIWDNWNI 18 (294)
Q Consensus 2 ~~~~~~~~~~~w~~w~l 18 (294)
|++.|+ -.+=||.|.+
T Consensus 3 ld~~se-frKKwn~w~l 18 (26)
T 2fly_A 3 LDVASE-FRKKWNKWAL 18 (26)
T ss_pred ccccHH-HHHHHHHHHH
Confidence 455555 5666898876
No 10
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=6.08 E-value=2.4e+02 Score=27.84 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=19.8
Q ss_pred HHHHhhhhhcccCCCCcccccCCCCCCCcchhhhHHHHHH------HHHhcCCC
Q 041828 52 ANFGVGLITERARDTPTAEYSSKQQPAENNELLAFWATFF------MLHLGGPD 99 (294)
Q Consensus 52 a~yaLG~l~~~~~~~~~~~~~~~~~~~~~~~L~~~WApfL------LlhLGg~D 99 (294)
++|+++.++.+.+. .+......||+..+ |+-.||.|
T Consensus 432 ~s~vl~~~ss~g~~------------~p~~~~rifWgv~~g~va~~LL~~GG~~ 473 (539)
T 4ain_A 432 ASTVMGTMSQHGQL------------EANKWVTAAWGVATAAIGLTLLLSGGDN 473 (539)
T ss_dssp HHHHHHHHHTTTCS------------SCCHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHcCCCC------------CCCcchhhHHHHHHHHHHHHHHHhCCHH
Confidence 67889988864321 13345678998765 33356644
Done!