Query 041828
Match_columns 294
No_of_seqs 126 out of 391
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 19:02:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041828.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041828hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bp8c1 d.95.1.1 (C:13-87) Glu 30.2 12 0.00089 25.3 2.1 18 88-105 2-19 (75)
2 d1o65a_ b.58.1.2 (A:) Hypothet 6.3 37 0.0027 27.7 -1.0 24 94-117 57-81 (233)
3 d2hg7a1 d.186.2.1 (A:1-60) Pha 5.5 1.8E+02 0.013 18.3 2.4 12 7-18 44-55 (60)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 5.5 2.5E+02 0.018 14.9 3.8 10 254-263 3-12 (30)
5 d2h3ja1 b.34.1.2 (A:1-75) Hypo 3.8 2.6E+02 0.019 17.8 2.3 41 96-136 7-47 (75)
6 d1jb0x_ f.23.20.1 (X:) Subunit 3.7 1.9E+02 0.014 15.3 1.2 11 83-93 5-15 (29)
7 d1j2oa2 g.39.1.3 (A:31-63) Rho 3.6 1.5E+02 0.011 16.5 0.6 15 208-222 16-30 (33)
8 d1qs0b2 c.48.1.2 (B:206-339) 2 3.5 94 0.0069 22.5 -0.4 16 94-109 101-116 (134)
9 d2fi9a1 c.103.1.1 (A:11-128) H 3.4 1.4E+02 0.01 21.0 0.5 12 94-105 1-12 (118)
10 d2gcxa1 b.34.1.2 (A:1-75) Ferr 3.3 1.7E+02 0.013 18.9 0.9 41 96-136 6-46 (75)
No 1
>d3bp8c1 d.95.1.1 (C:13-87) Glucose permease domain IIB {Escherichia coli [TaxId: 562]}
Probab=30.24 E-value=12 Score=25.29 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCCcceeec
Q 041828 88 ATFFMLHLGGPDTITAFA 105 (294)
Q Consensus 88 ApfLLlhLGg~DtITAys 105 (294)
|+-++-++||.|||+...
T Consensus 2 A~~ii~~lGG~~NI~~~~ 19 (75)
T d3bp8c1 2 APALVAAFGGKENITNLD 19 (75)
T ss_dssp HHHHHHHTTCTTTEEEEC
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 566788999999998764
No 2
>d1o65a_ b.58.1.2 (A:) Hypothetical protein YiiM {Escherichia coli [TaxId: 562]}
Probab=6.28 E-value=37 Score=27.72 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.0
Q ss_pred HhcCCC-cceeeccccccccchhhh
Q 041828 94 HLGGPD-TITAFALEDNELCLRHLF 117 (294)
Q Consensus 94 hLGg~D-tITAysleDn~lw~R~~l 117 (294)
|-|||| .+..|+.|+-+.|.+.+-
T Consensus 57 ~HGG~dkAV~~~~~e~y~~w~~~l~ 81 (233)
T d1o65a_ 57 VHGGPDRALCHYPREHYLYWAREFP 81 (233)
T ss_dssp CCCGGGGSEEEEETHHHHHHHHHCG
T ss_pred CCCCcCCEEEEeCHHHHHHHHHHhc
Confidence 468998 799999999999988653
No 3
>d2hg7a1 d.186.2.1 (A:1-60) Phage-like element PbsX protein XkdW {Bacillus subtilis [TaxId: 1423]}
Probab=5.51 E-value=1.8e+02 Score=18.31 Aligned_cols=12 Identities=8% Similarity=0.507 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHH
Q 041828 7 ESIKKIWDNWNI 18 (294)
Q Consensus 7 ~~~~~~w~~w~l 18 (294)
..++++|+||+.
T Consensus 44 ~EL~~~w~e~q~ 55 (60)
T d2hg7a1 44 AELETWWEELQK 55 (60)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 678999999974
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.47 E-value=2.5e+02 Score=14.90 Aligned_cols=10 Identities=20% Similarity=0.630 Sum_probs=6.3
Q ss_pred hHHHHHHHHH
Q 041828 254 CVTYTLFLGA 263 (294)
Q Consensus 254 ~ITyvLL~ga 263 (294)
.|||+++..-
T Consensus 3 ~i~yv~ifac 12 (30)
T d2axtt1 3 TITYVFIFAC 12 (30)
T ss_dssp HHHHHHHHHH
T ss_pred eeehHHHHHH
Confidence 4788776543
No 5
>d2h3ja1 b.34.1.2 (A:1-75) Hypothetical protein PA4359 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.76 E-value=2.6e+02 Score=17.79 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=31.1
Q ss_pred cCCCcceeeccccccccchhhhhhheeeeeeeEEEEeeCCC
Q 041828 96 GGPDTITAFALEDNELCLRHLFGFIFQAVAAVYIFLTSLPG 136 (294)
Q Consensus 96 Gg~DtITAysleDn~lw~R~~l~l~~Qv~~a~yv~~~s~~~ 136 (294)
|-.-.|+.|+-|-++..+|++..+.+--..-+-++.++..+
T Consensus 7 g~~~~I~g~~~~~~~~~~~rL~~mG~~~G~~v~v~~~~p~g 47 (75)
T d2h3ja1 7 SRSYRITGYSPAISNGYRQRLFSMGLLPGAALRVVRIAPLG 47 (75)
T ss_dssp CCEEEEEEECTTCCTTHHHHHHHHTCCTTCEEEEEECCTTS
T ss_pred CCEEEEEEECCcCCHHHHHHHHHcCCCCCCEEEEEEECCCC
Confidence 34457999987767777899999988877777777776544
No 6
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=3.68 E-value=1.9e+02 Score=15.26 Aligned_cols=11 Identities=27% Similarity=0.896 Sum_probs=7.7
Q ss_pred hhhHHHHHHHH
Q 041828 83 LLAFWATFFML 93 (294)
Q Consensus 83 L~~~WApfLLl 93 (294)
.-.+||..||.
T Consensus 5 frt~wa~llla 15 (29)
T d1jb0x_ 5 FRTFWAVLLLA 15 (29)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45689987764
No 7
>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.60 E-value=1.5e+02 Score=16.46 Aligned_cols=15 Identities=13% Similarity=-0.130 Sum_probs=9.8
Q ss_pred hhhcCccccccchhH
Q 041828 208 VLHTKIQVTHSVLAI 222 (294)
Q Consensus 208 ~lYTK~~v~~t~~g~ 222 (294)
-+|||+..+.....+
T Consensus 16 tlytk~nliLCkrDY 30 (33)
T d1j2oa2 16 RLYYKLGRKLCRRDY 30 (33)
T ss_dssp CCCCBTTBCCCHHHH
T ss_pred HHHhhcceeeehhhh
Confidence 478888877654443
No 8
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]}
Probab=3.46 E-value=94 Score=22.50 Aligned_cols=16 Identities=31% Similarity=0.100 Sum_probs=13.9
Q ss_pred HhcCCCcceeeccccc
Q 041828 94 HLGGPDTITAFALEDN 109 (294)
Q Consensus 94 hLGg~DtITAysleDn 109 (294)
++|+||+-+.|+.|++
T Consensus 101 ri~~~d~p~p~~~e~~ 116 (134)
T d1qs0b2 101 RVTGWDTPYPHAQEWA 116 (134)
T ss_dssp EEECCSSCCCSTTHHH
T ss_pred EECCCCcCCCCChHHH
Confidence 4899999999998875
No 9
>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]}
Probab=3.42 E-value=1.4e+02 Score=20.99 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=10.9
Q ss_pred HhcCCCcceeec
Q 041828 94 HLGGPDTITAFA 105 (294)
Q Consensus 94 hLGg~DtITAys 105 (294)
|.+||.-|+||+
T Consensus 1 ~f~~~~~I~~Yg 12 (118)
T d2fi9a1 1 HFPGRAPIDAYG 12 (118)
T ss_dssp CBSSCCCEEEEE
T ss_pred CCCCCCcEeeec
Confidence 788999999998
No 10
>d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA {Klebsiella pneumoniae [TaxId: 573]}
Probab=3.27 E-value=1.7e+02 Score=18.91 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=30.1
Q ss_pred cCCCcceeeccccccccchhhhhhheeeeeeeEEEEeeCCC
Q 041828 96 GGPDTITAFALEDNELCLRHLFGFIFQAVAAVYIFLTSLPG 136 (294)
Q Consensus 96 Gg~DtITAysleDn~lw~R~~l~l~~Qv~~a~yv~~~s~~~ 136 (294)
|-...|++|+-|-+...+|++..+.+--...+-++.++..+
T Consensus 6 g~~~~I~g~~~~~~~~~~~RL~~mGl~pG~~V~v~~~ap~g 46 (75)
T d2gcxa1 6 DSAWKITGFSRDISPAYRQKLLSLGMLPGSSFHVVRVAPLG 46 (75)
T ss_dssp TSEEEEECCCSSCCHHHHHHHTTTTCCSSEEEEECCCCSSC
T ss_pred CCcEEEEEecccCCHHHHHHHHHcCCCCCCEEEEEEECCCC
Confidence 33457999997768888899999888777666666665433
Done!