BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041829
(486 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 456 bits (1173), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/490 (45%), Positives = 307/490 (62%), Gaps = 25/490 (5%)
Query: 1 MDAEQLRENAHKMVDFIADYYKSIENFPVLSQVQPGYLHNLIPDSAPHHPESLQNVLDGY 60
M+A + R +MVD++A+Y + IE V V+PGYL LIP +AP P++ +++++
Sbjct: 1 MNASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIIN-- 58
Query: 61 IDIQEKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMI 120
D+++ I+PGVTHW SP +FAY+P+ SS L +ML + +GFSW SPA TELE +
Sbjct: 59 -DVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETV 117
Query: 121 VLDWLAKLLKLPEDFLS--SGQGGGVIQGTASEXXXXXXXXXXXXXXXXXGKNS------ 172
++DWL K+L+LP+ FL+ +G+GGGVIQG+ASE S
Sbjct: 118 MMDWLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQA 177
Query: 173 --LEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTI 230
+EKLV Y+SDQ HS++++A IGG+ ++ S N+++ +L EA+ RD
Sbjct: 178 AIMEKLVAYSSDQAHSSVERAGLIGGV-----KLKAIPSDGNFAMRASALQEALERDKAA 232
Query: 231 GLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVE 290
GLIPFF+ AT+GTT+ + D LL +G I +W HVDAAYAGSA ICPE+R ++GVE
Sbjct: 233 GLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292
Query: 291 EADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIP 350
ADSFN N HKW L NFDCSA+WVK R L + +P +LK+ + ++ DY+ WQIP
Sbjct: 293 FADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIP 352
Query: 351 LGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFR 410
LGRRFRSLK+W V R+YG++ LQ YIR H+QL+ FE LV QD RFE+ I LVCFR
Sbjct: 353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFR 412
Query: 411 LLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWE 470
L NK+N LL INS KI + L K++LRFA+ + E HV AWE
Sbjct: 413 L-------KGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWE 465
Query: 471 VMQDKASALL 480
+++ A+ +L
Sbjct: 466 HIKELAADVL 475
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 453 bits (1166), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/490 (44%), Positives = 306/490 (62%), Gaps = 25/490 (5%)
Query: 1 MDAEQLRENAHKMVDFIADYYKSIENFPVLSQVQPGYLHNLIPDSAPHHPESLQNVLDGY 60
M+A + R +MVD++A+Y + IE V V+PGYL LIP +AP P++ +++++
Sbjct: 1 MNASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIIN-- 58
Query: 61 IDIQEKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMI 120
D+++ I+PGVTHW SP +FAY+P+ SS L +ML + +GFSW SPA TELE +
Sbjct: 59 -DVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETV 117
Query: 121 VLDWLAKLLKLPEDFLS--SGQGGGVIQGTASEXXXXXXXXXXXXXXXXXGKNS------ 172
++DWL K+L+LP+ FL+ +G+GGGVIQG+ASE S
Sbjct: 118 MMDWLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQA 177
Query: 173 --LEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTI 230
+EKLV Y+SDQ HS++++A IGG+ ++ S N+++ +L EA+ RD
Sbjct: 178 AIMEKLVAYSSDQAHSSVERAGLIGGV-----KLKAIPSDGNFAMRASALQEALERDKAA 232
Query: 231 GLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVE 290
GLIPFF+ AT+GTT+ + D LL +G I +W HVDAAYAGSA ICPE+R ++GVE
Sbjct: 233 GLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292
Query: 291 EADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIP 350
ADSFN N H W L NFDCSA+WVK R L + +P +LK+ + ++ DY+ WQIP
Sbjct: 293 FADSFNFNPHXWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIP 352
Query: 351 LGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFR 410
LGRRFRSLK+W V R+YG++ LQ YIR H+QL+ FE LV QD RFE+ I LVCFR
Sbjct: 353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFR 412
Query: 411 LLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWE 470
L NK+N LL INS KI + L K++LRFA+ + E HV AWE
Sbjct: 413 L-------KGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWE 465
Query: 471 VMQDKASALL 480
+++ A+ +L
Sbjct: 466 HIKELAADVL 475
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 437 bits (1123), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/480 (45%), Positives = 292/480 (60%), Gaps = 25/480 (5%)
Query: 1 MDAEQLRENAHKMVDFIADYYKSIENFPVLSQVQPGYLHNLIPDSAPHHPESLQNVLDGY 60
M+A R +MVD++ADY + IE V VQPGYL LIP +AP P++ +++L
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQ-- 58
Query: 61 IDIQEKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMI 120
D+++ I+PGVTHW SP +FAY+P+ SS L +ML + +GFSW SPA TELE +
Sbjct: 59 -DVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETV 117
Query: 121 VLDWLAKLLKLPEDFLSSGQGGG--VIQGTASEXXXXXXXXXXXXXXXXXGKNS------ 172
++DWL K+L+LPE FL+ G G VIQG+ASE S
Sbjct: 118 MMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQG 177
Query: 173 --LEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTI 230
LEKLV YASDQ HS++++A IGG+ ++ S +++ +L EA+ RD
Sbjct: 178 AVLEKLVAYASDQAHSSVERAGLIGGV-----KLKAIPSDGKFAMRASALQEALERDKAA 232
Query: 231 GLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVE 290
GLIPFF+ AT+GTTS + D LL +G I +W HVDAAYAGSA ICPE+R ++GVE
Sbjct: 233 GLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292
Query: 291 EADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIP 350
ADSFN N HKW L NFDCSA+WVK R L + +P +LK+ + ++ DY+ WQ+P
Sbjct: 293 FADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLP 352
Query: 351 LGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFR 410
LGRRFRSLK+W V R+YG++ LQ YIR H+QL+ FE V QD RFEV LVCFR
Sbjct: 353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFR 412
Query: 411 LLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWE 470
L + LN LL+ INS KI + L G+++LRFA+ + E HV AWE
Sbjct: 413 L-------KGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWE 465
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/492 (43%), Positives = 295/492 (59%), Gaps = 35/492 (7%)
Query: 1 MDAEQLRENAHKMVDFIADYYKSIENFPVLSQVQPGYLHNLIPDSAPHHPESLQNVLDGY 60
M+A + ++ A MVDFIA+Y ++I VL +V+PGYL LIPD+AP PE Q+V+
Sbjct: 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQ-- 58
Query: 61 IDIQEKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMI 120
DI+ I+PGVTHW SP + AY+P+ +S + +MLS + +GF+WI SPA TELE++
Sbjct: 59 -DIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVV 117
Query: 121 VLDWLAKLLKLPEDFL--SSGQGGGVIQGTASEXXXXXXXXXXXXXXXXXGK-------- 170
++DWL K+L+LP +FL S G+GGGVIQGTASE +
Sbjct: 118 MMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEH 177
Query: 171 NSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTI 230
L KLV Y SDQ HS++++A +GG+ L++ S N+ + +L +AI +D+
Sbjct: 178 TILGKLVGYCSDQAHSSVERAGLLGGVK------LRSVQSENHRMRGAALEKAIEQDVAE 231
Query: 231 GLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVE 290
GLIPF+ T+GTT+S A D L G + + +W HVDAAYAGSA ICPEYR + G+E
Sbjct: 232 GLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIE 291
Query: 291 EADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIP 350
ADSFN N H W L NFDCSA+W+KD + ++ + + +P +LK+ + DY+ WQIP
Sbjct: 292 SADSFNFNPHXWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGS--APDYRHWQIP 349
Query: 351 LGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFR 410
LGRRFR+LKLW VLRLYG+ENLQ +IR H AK F L D RFE+ LVCFR
Sbjct: 350 LGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFR 409
Query: 411 LLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTE-------WR 463
L N+ N LL IN G I + + Y LR A+ + T+ W+
Sbjct: 410 L-------KGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWK 462
Query: 464 HVNAAWEVMQDK 475
V+AA + M+ +
Sbjct: 463 EVSAAADEMEQE 474
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 291/493 (59%), Gaps = 28/493 (5%)
Query: 1 MDAEQLRENAHKMVDFIADYYKSIENFPVLSQVQPGYLHNLIPDSAPHHPESLQNVLDGY 60
M+ E+ RE +MVD+I Y ++ V VQPGYL +P+SAP P+S ++ +
Sbjct: 6 MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSI---F 62
Query: 61 IDIQEKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMI 120
DI+ I+PGV HWQSP+ AYYP+ +S LG+ML+ +N +GF+W +SPA TELEM
Sbjct: 63 GDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMN 122
Query: 121 VLDWLAKLLKLPEDFL---SSGQGGGVIQGTASEXXXXXXXXXXXXXXXXXGKNSLE--- 174
V+DWLAK+L LPE FL S QGGGV+Q T SE + +
Sbjct: 123 VMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADE 182
Query: 175 -----KLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLT 229
+LV YASDQ HS+++KA G I + L D N+SL ++L +AI D
Sbjct: 183 SSLNARLVAYASDQAHSSVEKA---GLISLVKMKFLPVDD--NFSLRGEALQKAIEEDKQ 237
Query: 230 IGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGV 289
GL+P F+CAT+GTT A D L LG I G+W H+DAAYAG+A +CPE+R ++ G+
Sbjct: 238 RGLVPVFVCATLGTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGI 297
Query: 290 EEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQI 349
E ADSF N KW + +FDC+ WVKD+ L Q+ S NP +L++ + + + D+ WQI
Sbjct: 298 EYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRH--ANSGVATDFMHWQI 355
Query: 350 PLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCF 409
PL RRFRS+KLW V+R +G++NLQ ++R+ ++AK+FE LV D FE+ R LV F
Sbjct: 356 PLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVF 415
Query: 410 RLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAW 469
RL P N L +L +I G++F+ + K I+RF V + T + W
Sbjct: 416 RLKGP-------NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDW 468
Query: 470 EVMQDKASALLAR 482
+++D A+ +L++
Sbjct: 469 NLIRDAATLILSQ 481
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 169/379 (44%), Gaps = 20/379 (5%)
Query: 49 HPESLQNVLDGYI----DIQEKILP---GVTHWQ----SPNYFAYYPSNSSVAGFLGEML 97
PE L+ +LD + + Q++IL V + P +F S G ++
Sbjct: 70 EPEELKQLLDLELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSGLDPHALAGRII 129
Query: 98 SAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEXXXXXX 157
+ LN +++ +P +E VL L L+ SSG G G+ S
Sbjct: 130 TESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGW-----SSGDGIFCPGGSISNMYAVNL 184
Query: 158 XXXXXX-XXXXXGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLS 216
G +L L ++ S + H ++QK G+ + RV+K D +
Sbjct: 185 ARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGK--MV 242
Query: 217 PDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSA 276
P+ L I G +PF + AT GTT A DPL A+ ++ + +G+W HVDAA+ GS
Sbjct: 243 PEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSV 302
Query: 277 CICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSL-STNPEFLKNKA 335
+ +R +DG++ ADS N HK CSAL ++D + L++ + +L +
Sbjct: 303 LLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQD 362
Query: 336 SQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLR 395
++ +D D + GRR LKLW++ + G + L+ I LA++ + +
Sbjct: 363 KFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREG 422
Query: 396 FEVVTPRIFSLVCFRLLPP 414
FE+V F VCF +PP
Sbjct: 423 FELVMEPEFVNVCFWFVPP 441
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 149/344 (43%), Gaps = 14/344 (4%)
Query: 77 PNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFL 136
P YF + + G + L++ N F++ +P LE + L + +++ P
Sbjct: 89 PRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEIAPVFVLLEYVTLKKMREIIGWP---- 144
Query: 137 SSGQGGGVIQ---GTASEXXXXXXXXXXXXXXXXXGKNSLEKLVVYASDQTHSALQKACQ 193
G G G+ ++ G +L +L+ + S+ +H +L+K
Sbjct: 145 -GGSGDGIFSPGGAISNMYAMMIARFKMFPEVKEKGMAALPRLIAFTSEHSHFSLKKGAA 203
Query: 194 IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLL 253
GI + ++K D + P L I G +PF + AT GTT A DPLL
Sbjct: 204 ALGIGTDSVILIKCDERGK--MIPSDLERRILEAKQKGFVPFLVSATAGTTVYGAFDPLL 261
Query: 254 ALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALW 313
A+ +I K +W HVDAA+ G + +++ + GVE A+S N H CSAL
Sbjct: 262 AVADICKKYKIWMHVDAAWGGGLLMSRKHKWKLSGVERANSVTWNPHXMMGVPLQCSALL 321
Query: 314 VKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQ 373
V++ + + +L + ++ D D + GR KLW++ R G +
Sbjct: 322 VREEGLMQNCNQMHASYLFQQDKHYDLSYDTGDKALQCGRHVDVFKLWLMWRAKGTTGFE 381
Query: 374 GYIRNHIQLAKHFEGLVAQDLRFEVV---TPRIFSLVCFRLLPP 414
++ ++LA++ ++ +E+V P+ + VCF +PP
Sbjct: 382 AHVDKCLELAEYLYNIIKNREGYEMVFDGKPQ-HTNVCFWYIPP 424
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 162/371 (43%), Gaps = 18/371 (4%)
Query: 49 HPESLQNVLDGYIDIQEKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSW 108
HPESL+ +L +D ++ + GV P +F + + G GE L++ N F++
Sbjct: 72 HPESLEQIL---VDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTY 127
Query: 109 ITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQ---GTASEXXXXXXXXXXXXXX 165
+P +E I L + +++ SS G G+ ++
Sbjct: 128 EIAPVFVLMEQITLKKMREIVGW-----SSKDGDGIFSPGGAISNMYSIMAARYKYFPEV 182
Query: 166 XXXGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAIS 225
G ++ KLV++ S+Q+H +++KA G N ++K + + P I
Sbjct: 183 KTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERG--KIIPADFEAKIL 240
Query: 226 RDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQY 285
G +PF++ AT GTT A DP+ + +I + +W HVDAA+ G + ++R
Sbjct: 241 EAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHK 300
Query: 286 IDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYK 345
++G+E A+S N H CSA+ VK++ L + +L + ++ D
Sbjct: 301 LNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTG 360
Query: 346 DWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVV---TPR 402
D I GR K W++ + G + I ++LA++ + FE+V P
Sbjct: 361 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPE 420
Query: 403 IFSLVCFRLLP 413
+ VCF +P
Sbjct: 421 -HTNVCFWYIP 430
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 161/371 (43%), Gaps = 18/371 (4%)
Query: 49 HPESLQNVLDGYIDIQEKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSW 108
HPESL+ +L +D ++ + GV P +F + + G GE L++ N F++
Sbjct: 69 HPESLEQIL---VDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTY 124
Query: 109 ITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQ---GTASEXXXXXXXXXXXXXX 165
+P +E I L + +++ SS G G+ ++
Sbjct: 125 EIAPVFVLMEQITLKKMREIVGW-----SSKDGDGIFSPGGAISNMYSIMAARYKYFPEV 179
Query: 166 XXXGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAIS 225
G ++ KLV++ S+Q+H +++KA G N ++K + + P I
Sbjct: 180 KTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERG--KIIPADFEAKIL 237
Query: 226 RDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQY 285
G +PF++ AT GTT A DP+ + +I + +W HVDAA+ G + ++R
Sbjct: 238 EAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHK 297
Query: 286 IDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYK 345
++G+E A+S N H CSA+ VK++ L +L Q ++ D
Sbjct: 298 LNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTG 357
Query: 346 DWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVV---TPR 402
D I GR K W++ + G + I ++LA++ + FE+V P
Sbjct: 358 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPE 417
Query: 403 IFSLVCFRLLP 413
+ VCF +P
Sbjct: 418 -HTNVCFWYIP 427
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 110/419 (26%), Positives = 183/419 (43%), Gaps = 36/419 (8%)
Query: 53 LQNVLDGYIDIQEKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSP 112
L++V+D D+ E + Q P+ A+ + E A LN SW +
Sbjct: 80 LKSVID---DVAELVAKNAIFTQHPDCIAHLHTPPLXPAVAAEAXIAALNQSXDSWDQAS 136
Query: 113 AATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEXXXXXXXXXXXXXXXXXGKNS 172
+AT +E V++WL L E + G+ ++ +S
Sbjct: 137 SATYVEQKVVNWLCDKYDLSE------KADGIFTSGGTQSNQXGLXLARDWIADKLSGHS 190
Query: 173 LE---------KLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEA 223
++ KL + S ++H +QK+ G+ + V D++ + + L E
Sbjct: 191 IQKLGLPDYADKLRIVCSKKSHFTVQKSASWXGLGEK--AVXTVDANADGTXDITKLDEV 248
Query: 224 ISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYR 283
I++ GLIPF + T GTT A+D L + + A + W HVD AY G A I ++
Sbjct: 249 IAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGAYGG-ALILSSHK 307
Query: 284 QYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVD 343
+ GVE A S +++ HK F C AL V D++ + L + ++L + + +VD
Sbjct: 308 SRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYLNREHDELPNLVD 366
Query: 344 YKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLR----FEVV 399
I +RF +LK++ + G + L G +H+ LA+ E VA +R FE++
Sbjct: 367 K---SIATTKRFDALKVFXTXQNVGPKAL-GDXYDHL-LAQTLE--VADXIRTNDQFELL 419
Query: 400 TPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAP 458
S V FR D D +LN L + + G + T++ GK L+F + P
Sbjct: 420 AEPSLSTVLFRATHETADLD---ELNKALRLEALTRGIAVLGETIVDGKTALKFTILNP 475
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 237 LCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAG 274
+ GTT +D + L IAK N ++ HVDAA+ G
Sbjct: 175 IIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGG 212
>pdb|2YRI|A Chain A, Crystal Structure Of Alanine-pyruvate Aminotransferase
With 2- Methylserine
pdb|2YRI|B Chain B, Crystal Structure Of Alanine-pyruvate Aminotransferase
With 2- Methylserine
pdb|2YRR|A Chain A, Hypothetical Alanine Aminotransferase (Tth0173) From
Thermus Thermophilus Hb8
pdb|2YRR|B Chain B, Hypothetical Alanine Aminotransferase (Tth0173) From
Thermus Thermophilus Hb8
Length = 353
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 189 QKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATV-GTTSST 247
Q+ ++ +H + VL D + P+++A A+ R + + A V G TS+
Sbjct: 87 QRVAEMAALHGLDPEVL--DFPPGEPVDPEAVARALKRRR------YRMVALVHGETSTG 138
Query: 248 AVDPLLALGNIAKSNGMWFHVDA 270
++P A+G +AK G F +DA
Sbjct: 139 VLNPAEAIGALAKEAGALFFLDA 161
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 18/153 (11%)
Query: 126 AKLLKLPEDFLSSGQGGGVIQGT----ASEXXXXXXXXXXXXXXXXXGKNSLEKLVVYAS 181
A+++ + L GG + GT +E G + E +V ++
Sbjct: 142 AEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSA 201
Query: 182 DQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATV 241
H+A KA Q GI ++++T +Y ++ EAI+ + + + +
Sbjct: 202 ---HAAFDKAAQYFGI-----KLVRTPLDADYRADVAAMREAITPNTVV------VAGSA 247
Query: 242 GTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAG 274
VDP+ + +A +G+ HVDA G
Sbjct: 248 PGXPHGVVDPIPEIAALAAEHGIGCHVDACLGG 280
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 18/153 (11%)
Query: 126 AKLLKLPEDFLSSGQGGGVIQGT----ASEXXXXXXXXXXXXXXXXXGKNSLEKLVVYAS 181
A+++ + L GG + GT +E G + E +V ++
Sbjct: 142 AEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSA 201
Query: 182 DQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATV 241
H+A KA Q GI ++++T +Y ++ EAI+ + + + +
Sbjct: 202 ---HAAFDKAAQYFGI-----KLVRTPLDADYRADVAAMREAITPNTVV------VAGSA 247
Query: 242 GTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAG 274
VDP+ + +A +G+ HVDA G
Sbjct: 248 PGYPHGVVDPIPEIAALAAEHGIGCHVDACLGG 280
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 18/153 (11%)
Query: 126 AKLLKLPEDFLSSGQGGGVIQGT----ASEXXXXXXXXXXXXXXXXXGKNSLEKLVVYAS 181
A+++ + L GG + GT +E G + E +V ++
Sbjct: 142 AEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSA 201
Query: 182 DQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATV 241
H+A KA Q GI ++++T +Y ++ EAI+ + + + +
Sbjct: 202 ---HAAFDKAAQYFGI-----KLVRTPLDADYRADVAAMREAITPNTVV------VAGSA 247
Query: 242 GTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAG 274
VDP+ + +A +G+ HVDA G
Sbjct: 248 PGYPHGVVDPIPEIAALAAEHGIGCHVDACLGG 280
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 18/153 (11%)
Query: 126 AKLLKLPEDFLSSGQGGGVIQGT----ASEXXXXXXXXXXXXXXXXXGKNSLEKLVVYAS 181
A+++ + L GG + GT +E G + E +V ++
Sbjct: 146 AEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSA 205
Query: 182 DQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATV 241
H+A KA Q GI ++++T +Y ++ EAI+ + + + +
Sbjct: 206 ---HAAFDKAAQYFGI-----KLVRTPLDADYRADVAAMREAITPNTVV------VAGSA 251
Query: 242 GTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAG 274
VDP+ + +A +G+ HVDA G
Sbjct: 252 PGYPHGVVDPIPEIAALAAEHGIGCHVDACLGG 284
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 18/153 (11%)
Query: 126 AKLLKLPEDFLSSGQGGGVIQGT----ASEXXXXXXXXXXXXXXXXXGKNSLEKLVVYAS 181
A+++ + L GG + GT +E G + E +V ++
Sbjct: 146 AEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSA 205
Query: 182 DQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATV 241
H+A KA Q GI ++++T +Y ++ EAI+ + + + +
Sbjct: 206 ---HAAFDKAAQYFGI-----KLVRTPLDADYRADVAAMREAITPNTVV------VAGSA 251
Query: 242 GTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAG 274
VDP+ + +A +G+ HVDA G
Sbjct: 252 PGYPHGVVDPIPEIAALAAEHGIGCHVDACLGG 284
>pdb|3NZP|A Chain A, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
pdb|3NZP|B Chain B, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
Length = 619
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 6 LRENAHKMVDFIADYYKSIENFPVLSQVQPGYLHNLIPDSAPHHPESLQNVLD-GYIDIQ 64
L++ K++D + D YKSI+ L YLH+ I H ES+ + D GY+D+Q
Sbjct: 351 LKKQNPKLIDELYDLYKSIKPSNALE-----YLHDSI-----DHLESILTLFDLGYVDLQ 400
Query: 65 EK 66
++
Sbjct: 401 DR 402
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,390,168
Number of Sequences: 62578
Number of extensions: 577459
Number of successful extensions: 1352
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 27
length of query: 486
length of database: 14,973,337
effective HSP length: 103
effective length of query: 383
effective length of database: 8,527,803
effective search space: 3266148549
effective search space used: 3266148549
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)