Query 041829
Match_columns 486
No_of_seqs 262 out of 2784
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 19:03:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e1o_A HDC, histidine decarbox 100.0 2.4E-73 8.1E-78 586.5 52.1 463 1-480 6-479 (481)
2 3k40_A Aromatic-L-amino-acid d 100.0 8.3E-74 2.8E-78 588.4 47.9 463 1-481 1-473 (475)
3 1js3_A DDC;, DOPA decarboxylas 100.0 4E-68 1.4E-72 549.5 51.1 467 1-482 1-477 (486)
4 3vp6_A Glutamate decarboxylase 100.0 8.5E-68 2.9E-72 548.3 52.5 468 2-480 20-506 (511)
5 2okj_A Glutamate decarboxylase 100.0 1.4E-64 4.9E-69 525.0 51.3 468 1-479 16-502 (504)
6 2jis_A Cysteine sulfinic acid 100.0 2.3E-63 7.9E-68 516.9 49.2 465 1-478 34-514 (515)
7 2qma_A Diaminobutyrate-pyruvat 100.0 3.3E-61 1.1E-65 498.8 49.7 458 1-479 29-496 (497)
8 2dgk_A GAD-beta, GADB, glutama 100.0 1.4E-48 4.6E-53 399.7 37.1 412 35-482 7-437 (452)
9 3hbx_A GAD 1, glutamate decarb 100.0 1.6E-45 5.3E-50 380.8 38.7 415 30-482 15-447 (502)
10 3mc6_A Sphingosine-1-phosphate 100.0 1E-40 3.6E-45 345.4 28.8 392 42-481 34-439 (497)
11 3mad_A Sphingosine-1-phosphate 100.0 3.9E-39 1.3E-43 334.9 33.3 395 44-483 69-473 (514)
12 3bc8_A O-phosphoseryl-tRNA(SEC 100.0 7.4E-39 2.5E-43 318.8 25.6 382 44-483 21-447 (450)
13 2z67_A O-phosphoseryl-tRNA(SEC 100.0 4.2E-37 1.5E-41 314.5 26.7 392 4-475 32-454 (456)
14 3f9t_A TDC, L-tyrosine decarbo 100.0 1.4E-35 4.9E-40 297.2 35.0 382 45-477 4-396 (397)
15 1wyu_B Glycine dehydrogenase s 100.0 1.7E-31 5.9E-36 274.2 31.1 396 35-478 31-440 (474)
16 3hl2_A O-phosphoseryl-tRNA(SEC 100.0 2E-29 6.9E-34 246.9 30.6 323 114-483 115-465 (501)
17 1wyu_A Glycine dehydrogenase ( 100.0 6.8E-29 2.3E-33 252.6 31.5 377 34-475 30-436 (438)
18 3nnk_A Ureidoglycine-glyoxylat 100.0 4.4E-29 1.5E-33 251.6 26.0 357 74-479 9-390 (411)
19 4hvk_A Probable cysteine desul 100.0 4.1E-28 1.4E-32 241.6 31.0 343 79-481 3-375 (382)
20 2dr1_A PH1308 protein, 386AA l 100.0 3.3E-28 1.1E-32 243.0 29.6 351 78-483 21-383 (386)
21 3isl_A Purine catabolism prote 100.0 6E-29 2.1E-33 251.0 24.3 355 74-479 7-390 (416)
22 2z9v_A Aspartate aminotransfer 100.0 3.1E-27 1.1E-31 236.5 29.4 352 76-479 8-371 (392)
23 2yrr_A Aminotransferase, class 100.0 5.8E-28 2E-32 238.0 23.4 340 82-477 4-351 (353)
24 1iug_A Putative aspartate amin 100.0 8.7E-28 3E-32 236.8 24.3 337 83-480 6-349 (352)
25 3e9k_A Kynureninase; kynurenin 100.0 1.6E-27 5.5E-32 244.4 27.2 357 79-479 70-461 (465)
26 3kgw_A Alanine-glyoxylate amin 100.0 6.8E-28 2.3E-32 241.2 23.7 356 75-480 20-389 (393)
27 3zrp_A Serine-pyruvate aminotr 100.0 3.8E-28 1.3E-32 242.3 21.5 345 84-480 8-364 (384)
28 4eb5_A Probable cysteine desul 100.0 5.9E-27 2E-31 233.5 30.2 313 108-481 35-375 (382)
29 3lvm_A Cysteine desulfurase; s 100.0 1.9E-26 6.5E-31 233.3 32.1 343 78-481 24-401 (423)
30 2huf_A Alanine glyoxylate amin 100.0 3.4E-27 1.2E-31 236.3 26.4 355 77-481 18-385 (393)
31 1vjo_A Alanine--glyoxylate ami 100.0 1.6E-27 5.5E-32 238.8 23.7 336 89-476 45-392 (393)
32 3ffr_A Phosphoserine aminotran 100.0 1.5E-27 5.2E-32 235.9 23.3 343 79-476 5-361 (362)
33 1t3i_A Probable cysteine desul 100.0 7.4E-27 2.5E-31 235.9 28.4 321 115-480 71-414 (420)
34 2ch1_A 3-hydroxykynurenine tra 100.0 6.3E-27 2.2E-31 234.6 23.6 356 75-480 15-384 (396)
35 1kmj_A Selenocysteine lyase; p 100.0 3.2E-26 1.1E-30 230.1 28.7 321 114-479 65-405 (406)
36 1svv_A Threonine aldolase; str 100.0 3.8E-26 1.3E-30 225.6 27.7 325 89-479 26-358 (359)
37 3f0h_A Aminotransferase; RER07 99.9 1.1E-26 3.7E-31 231.3 23.4 339 82-477 23-372 (376)
38 1eg5_A Aminotransferase; PLP-d 99.9 1.7E-25 5.7E-30 223.1 31.6 310 112-481 40-378 (384)
39 1v72_A Aldolase; PLP-dependent 99.9 1.7E-26 5.7E-31 228.0 21.9 302 115-479 42-353 (356)
40 3dzz_A Putative pyridoxal 5'-p 99.9 4.7E-26 1.6E-30 227.8 25.2 334 91-479 43-389 (391)
41 1elu_A L-cysteine/L-cystine C- 99.9 2.4E-26 8.2E-31 229.8 21.8 315 115-475 58-388 (390)
42 1m32_A 2-aminoethylphosphonate 99.9 3.1E-26 1E-30 226.8 22.2 313 116-477 37-363 (366)
43 2bkw_A Alanine-glyoxylate amin 99.9 7.5E-26 2.6E-30 225.8 25.0 356 77-478 4-383 (385)
44 3vax_A Putative uncharacterize 99.9 1.4E-26 4.9E-31 232.4 19.0 347 76-478 20-399 (400)
45 3tqx_A 2-amino-3-ketobutyrate 99.9 5.1E-25 1.7E-29 220.9 29.1 300 115-479 87-396 (399)
46 2w8t_A SPT, serine palmitoyltr 99.9 9.9E-25 3.4E-29 221.1 31.2 300 115-481 108-417 (427)
47 3cai_A Possible aminotransfera 99.9 1.5E-25 5.1E-30 225.4 24.0 341 78-475 28-405 (406)
48 1j32_A Aspartate aminotransfer 99.9 1.4E-25 4.9E-30 224.3 23.7 330 91-479 46-387 (388)
49 2e7j_A SEP-tRNA:Cys-tRNA synth 99.9 1.2E-26 4.2E-31 230.4 15.8 301 114-478 51-369 (371)
50 4dq6_A Putative pyridoxal phos 99.9 7.2E-25 2.5E-29 219.2 24.9 325 91-476 48-390 (391)
51 1b9h_A AHBA synthase, protein 99.9 3.9E-24 1.3E-28 213.9 29.8 332 92-478 18-387 (388)
52 1xi9_A Putative transaminase; 99.9 5E-25 1.7E-29 221.7 23.3 328 92-480 58-404 (406)
53 2fnu_A Aminotransferase; prote 99.9 1E-24 3.4E-29 216.9 24.8 332 91-479 13-372 (375)
54 3e77_A Phosphoserine aminotran 99.9 8.1E-26 2.8E-30 222.8 16.2 340 84-478 20-374 (377)
55 3l8a_A METC, putative aminotra 99.9 1.1E-24 3.7E-29 220.4 24.6 331 92-477 78-420 (421)
56 1fc4_A 2-amino-3-ketobutyrate 99.9 4E-24 1.4E-28 214.7 28.4 299 116-479 90-397 (401)
57 2gb3_A Aspartate aminotransfer 99.9 8.7E-25 3E-29 220.2 23.5 326 91-480 59-403 (409)
58 1qz9_A Kynureninase; kynurenin 99.9 3.7E-24 1.3E-28 215.9 28.0 310 116-478 71-401 (416)
59 3piu_A 1-aminocyclopropane-1-c 99.9 5.9E-24 2E-28 215.9 29.3 326 107-479 81-432 (435)
60 3nra_A Aspartate aminotransfer 99.9 9.3E-25 3.2E-29 219.7 22.4 315 107-479 73-405 (407)
61 1gd9_A Aspartate aminotransfer 99.9 1.3E-24 4.5E-29 217.3 23.0 329 91-478 42-385 (389)
62 3m5u_A Phosphoserine aminotran 99.9 4.3E-25 1.5E-29 216.9 18.9 339 79-478 6-359 (361)
63 1o4s_A Aspartate aminotransfer 99.9 2.2E-24 7.7E-29 215.8 24.2 323 90-477 56-387 (389)
64 3ke3_A Putative serine-pyruvat 99.9 2.1E-24 7.3E-29 215.1 23.9 325 110-480 29-377 (379)
65 2vyc_A Biodegradative arginine 99.9 3.9E-24 1.4E-28 229.4 27.6 308 121-479 210-605 (755)
66 1c7n_A Cystalysin; transferase 99.9 2.3E-24 7.7E-29 216.4 23.9 333 91-481 47-395 (399)
67 1rv3_A Serine hydroxymethyltra 99.9 5.7E-25 1.9E-29 226.0 19.9 326 108-478 82-430 (483)
68 1iay_A ACC synthase 2, 1-amino 99.9 2.6E-23 9E-28 210.7 32.0 325 107-477 78-425 (428)
69 3a9z_A Selenocysteine lyase; P 99.9 3.3E-24 1.1E-28 217.5 25.1 356 76-480 18-429 (432)
70 3a2b_A Serine palmitoyltransfe 99.9 5E-24 1.7E-28 213.8 25.8 301 112-479 84-392 (398)
71 3dyd_A Tyrosine aminotransfera 99.9 3.3E-24 1.1E-28 217.2 23.3 338 89-479 72-424 (427)
72 2zc0_A Alanine glyoxylate tran 99.9 7.9E-24 2.7E-28 213.0 25.4 334 90-480 51-405 (407)
73 3uwc_A Nucleotide-sugar aminot 99.9 2.3E-24 7.8E-29 214.4 21.1 320 93-478 21-370 (374)
74 3kax_A Aminotransferase, class 99.9 8.8E-24 3E-28 210.7 25.3 327 91-476 40-382 (383)
75 3frk_A QDTB; aminotransferase, 99.9 4.2E-25 1.4E-29 219.7 15.6 323 90-478 16-367 (373)
76 3kki_A CAI-1 autoinducer synth 99.9 1.9E-23 6.7E-28 210.3 27.1 291 117-478 105-403 (409)
77 1d2f_A MALY protein; aminotran 99.9 1.9E-23 6.5E-28 209.0 26.7 330 90-479 43-389 (390)
78 2c81_A Glutamine-2-deoxy-scyll 99.9 6.2E-24 2.1E-28 214.6 23.0 321 115-479 41-414 (418)
79 3dr4_A Putative perosamine syn 99.9 1.7E-24 5.9E-29 216.7 18.4 308 110-475 54-389 (391)
80 1u08_A Hypothetical aminotrans 99.9 8E-24 2.7E-28 211.4 22.2 327 91-474 46-385 (386)
81 3g0t_A Putative aminotransfera 99.9 2.4E-23 8.3E-28 211.4 25.8 335 91-477 60-435 (437)
82 3h14_A Aminotransferase, class 99.9 1.8E-23 6.1E-28 209.3 24.0 326 91-480 47-383 (391)
83 3tcm_A Alanine aminotransferas 99.9 1.3E-22 4.3E-27 209.5 30.7 333 105-483 127-498 (500)
84 3op7_A Aminotransferase class 99.9 8.5E-24 2.9E-28 210.3 21.1 313 103-480 54-372 (375)
85 1vp4_A Aminotransferase, putat 99.9 6E-23 2E-27 207.9 27.4 334 90-482 60-421 (425)
86 3aow_A Putative uncharacterize 99.9 1.2E-22 4.2E-27 206.8 29.6 334 90-480 93-446 (448)
87 1c4k_A Protein (ornithine deca 99.9 3.3E-23 1.1E-27 220.3 26.1 321 121-480 178-567 (730)
88 1v2d_A Glutamine aminotransfer 99.9 1.3E-23 4.4E-28 209.6 21.4 321 91-481 41-373 (381)
89 3ffh_A Histidinol-phosphate am 99.9 1.1E-22 3.6E-27 201.5 27.8 309 90-475 47-362 (363)
90 3euc_A Histidinol-phosphate am 99.9 2.5E-23 8.7E-28 206.3 23.2 289 112-476 67-365 (367)
91 2o0r_A RV0858C (N-succinyldiam 99.9 9.5E-24 3.2E-28 212.8 20.1 334 91-479 41-396 (411)
92 1bs0_A Protein (8-amino-7-oxon 99.9 1.1E-22 3.7E-27 203.0 27.2 291 116-475 84-383 (384)
93 3qm2_A Phosphoserine aminotran 99.9 6.7E-25 2.3E-29 217.5 11.1 308 110-478 66-384 (386)
94 2a7v_A Serine hydroxymethyltra 99.9 7.5E-23 2.6E-27 208.6 26.3 315 110-478 94-440 (490)
95 1mdo_A ARNB aminotransferase; 99.9 2.9E-23 1E-27 207.7 22.5 330 94-480 23-387 (393)
96 2dkj_A Serine hydroxymethyltra 99.9 1E-23 3.5E-28 212.0 19.0 328 90-478 36-387 (407)
97 1bw0_A TAT, protein (tyrosine 99.9 2.5E-23 8.7E-28 209.9 21.9 342 91-479 53-413 (416)
98 1yiz_A Kynurenine aminotransfe 99.9 5.1E-23 1.8E-27 208.6 24.2 337 91-476 53-426 (429)
99 2oga_A Transaminase; PLP-depen 99.9 3.1E-23 1E-27 208.2 22.1 323 91-479 44-396 (399)
100 3ly1_A Putative histidinol-pho 99.9 2.3E-22 7.9E-27 198.3 27.5 290 119-477 54-350 (354)
101 1b5p_A Protein (aspartate amin 99.9 3.8E-23 1.3E-27 206.5 22.1 324 92-476 48-382 (385)
102 2x3l_A ORN/Lys/Arg decarboxyla 99.9 2.2E-24 7.5E-29 219.4 13.2 290 117-478 58-352 (446)
103 2bwn_A 5-aminolevulinate synth 99.9 4.9E-22 1.7E-26 199.5 30.0 296 119-478 94-399 (401)
104 2zyj_A Alpha-aminodipate amino 99.9 1.1E-22 3.7E-27 204.0 25.1 324 90-481 49-395 (397)
105 3get_A Histidinol-phosphate am 99.9 1.7E-22 5.7E-27 200.2 26.0 311 91-476 46-364 (365)
106 3cq5_A Histidinol-phosphate am 99.9 1.1E-21 3.9E-26 194.6 31.6 293 114-476 71-365 (369)
107 2fyf_A PSAT, phosphoserine ami 99.9 4E-23 1.4E-27 207.3 21.3 343 77-478 39-397 (398)
108 3ele_A Amino transferase; RER0 99.9 5.1E-23 1.8E-27 206.4 22.0 327 91-479 51-396 (398)
109 2z61_A Probable aspartate amin 99.9 6.3E-23 2.2E-27 203.7 22.1 314 90-477 44-369 (370)
110 2cb1_A O-acetyl homoserine sul 99.9 4E-22 1.4E-26 200.9 27.6 300 117-474 57-411 (412)
111 2x5d_A Probable aminotransfera 99.9 1.4E-22 4.8E-27 204.3 24.3 332 90-479 52-398 (412)
112 1o69_A Aminotransferase; struc 99.9 2.8E-22 9.5E-27 200.9 25.8 314 111-477 31-385 (394)
113 3fdb_A Beta C-S lyase, putativ 99.9 2.9E-22 1E-26 199.2 25.7 321 92-478 40-375 (377)
114 2vi8_A Serine hydroxymethyltra 99.9 9.6E-23 3.3E-27 204.8 21.7 330 90-480 36-388 (405)
115 3n0l_A Serine hydroxymethyltra 99.9 3.7E-22 1.3E-26 201.2 25.6 310 109-478 64-388 (417)
116 3ihj_A Alanine aminotransferas 99.9 1.1E-21 3.9E-26 202.1 28.9 335 105-483 122-497 (498)
117 2rfv_A Methionine gamma-lyase; 99.9 4.2E-22 1.4E-26 199.8 24.9 286 115-475 63-396 (398)
118 2po3_A 4-dehydrase; external a 99.9 1.3E-21 4.5E-26 197.9 28.6 325 90-480 31-387 (424)
119 3fvs_A Kynurenine--oxoglutarat 99.9 3.6E-22 1.2E-26 201.8 24.0 340 91-478 44-421 (422)
120 2dou_A Probable N-succinyldiam 99.9 7E-22 2.4E-26 196.6 25.7 322 91-475 41-374 (376)
121 2o1b_A Aminotransferase, class 99.9 1.7E-22 6E-27 203.1 21.4 325 91-477 63-401 (404)
122 3b46_A Aminotransferase BNA3; 99.9 6.9E-23 2.4E-27 208.8 18.7 337 90-475 72-443 (447)
123 1jg8_A L-ALLO-threonine aldola 99.9 1.1E-22 3.8E-27 200.0 19.1 318 92-479 19-346 (347)
124 3b8x_A WBDK, pyridoxamine 5-ph 99.9 1.2E-21 4.2E-26 195.9 26.9 332 92-472 16-389 (390)
125 3ftb_A Histidinol-phosphate am 99.9 3.3E-21 1.1E-25 190.5 29.4 289 112-477 61-359 (361)
126 3lws_A Aromatic amino acid bet 99.9 1.2E-21 3.9E-26 193.6 25.9 330 76-475 11-355 (357)
127 3nyt_A Aminotransferase WBPE; 99.9 8.1E-23 2.8E-27 202.8 17.2 319 90-475 15-360 (367)
128 3qhx_A Cystathionine gamma-syn 99.9 1.2E-21 4.2E-26 195.9 25.5 285 110-472 64-391 (392)
129 2c0r_A PSAT, phosphoserine ami 99.9 4.9E-22 1.7E-26 196.7 22.2 307 110-478 43-360 (362)
130 3gbx_A Serine hydroxymethyltra 99.9 2.4E-22 8.4E-27 202.7 20.1 307 112-478 72-395 (420)
131 1gc0_A Methionine gamma-lyase; 99.9 9.8E-22 3.3E-26 197.2 23.8 286 110-475 63-397 (398)
132 3ju7_A Putative PLP-dependent 99.9 7.7E-22 2.6E-26 196.2 22.3 311 110-478 34-374 (377)
133 1lc5_A COBD, L-threonine-O-3-p 99.9 3.7E-21 1.3E-25 190.5 26.4 313 91-479 40-360 (364)
134 1e5e_A MGL, methionine gamma-l 99.9 4.5E-21 1.5E-25 192.6 26.6 285 112-481 62-397 (404)
135 3ecd_A Serine hydroxymethyltra 99.9 4.8E-21 1.7E-25 193.5 26.9 306 115-479 77-397 (425)
136 3ezs_A Aminotransferase ASPB; 99.9 5.4E-21 1.8E-25 190.1 26.0 317 90-477 38-373 (376)
137 1ax4_A Tryptophanase; tryptoph 99.9 4.1E-21 1.4E-25 196.7 25.7 354 78-479 44-441 (467)
138 1w23_A Phosphoserine aminotran 99.9 1.8E-22 6.1E-27 199.5 14.9 330 87-477 12-358 (360)
139 2ez2_A Beta-tyrosinase, tyrosi 99.9 4.5E-20 1.5E-24 188.5 32.3 319 107-479 70-431 (456)
140 3e2y_A Kynurenine-oxoglutarate 99.9 2.7E-21 9.3E-26 194.5 22.5 337 90-474 38-408 (410)
141 3hdo_A Histidinol-phosphate am 99.9 3.4E-21 1.2E-25 190.5 22.2 286 113-478 66-354 (360)
142 1cs1_A CGS, protein (cystathio 99.9 1.8E-20 6.3E-25 187.1 27.7 283 111-475 51-383 (386)
143 2x5f_A Aspartate_tyrosine_phen 99.9 8.4E-21 2.9E-25 192.3 25.1 314 107-479 83-429 (430)
144 3jtx_A Aminotransferase; NP_28 99.9 1.1E-20 3.8E-25 189.2 25.5 321 91-475 46-394 (396)
145 1fg7_A Histidinol phosphate am 99.9 1.5E-20 5E-25 185.7 25.7 285 114-475 60-354 (356)
146 3ri6_A O-acetylhomoserine sulf 99.9 3.5E-21 1.2E-25 194.1 21.5 257 110-433 80-368 (430)
147 1qgn_A Protein (cystathionine 99.9 1.4E-20 4.6E-25 190.4 25.8 286 111-478 113-444 (445)
148 3rq1_A Aminotransferase class 99.9 6.5E-21 2.2E-25 192.4 23.4 333 89-479 57-415 (418)
149 3p1t_A Putative histidinol-pho 99.9 6.8E-20 2.3E-24 179.2 29.5 300 91-476 32-334 (337)
150 2oqx_A Tryptophanase; lyase, p 99.9 1.7E-20 5.9E-25 192.1 25.8 353 78-479 42-442 (467)
151 2ctz_A O-acetyl-L-homoserine s 99.9 1.4E-20 4.7E-25 190.1 24.5 305 110-475 56-419 (421)
152 2r2n_A Kynurenine/alpha-aminoa 99.9 4E-20 1.4E-24 187.1 27.8 325 108-478 74-423 (425)
153 3pj0_A LMO0305 protein; struct 99.9 4.3E-20 1.5E-24 182.4 27.1 300 108-475 44-358 (359)
154 1vef_A Acetylornithine/acetyl- 99.9 6E-20 2.1E-24 183.8 27.3 292 116-476 87-394 (395)
155 3fsl_A Aromatic-amino-acid ami 99.9 1.4E-20 4.8E-25 188.5 22.4 326 91-475 47-396 (397)
156 3ndn_A O-succinylhomoserine su 99.9 2.1E-20 7.1E-25 188.0 23.4 252 111-435 80-354 (414)
157 3if2_A Aminotransferase; YP_26 99.9 3.6E-20 1.2E-24 188.5 25.4 335 91-481 50-442 (444)
158 3h7f_A Serine hydroxymethyltra 99.9 1E-20 3.6E-25 192.6 21.1 308 111-477 86-412 (447)
159 3n75_A LDC, lysine decarboxyla 99.9 8.4E-20 2.9E-24 192.5 28.5 312 112-479 195-560 (715)
160 1pff_A Methionine gamma-lyase; 99.9 5.3E-21 1.8E-25 186.8 17.7 277 122-475 4-330 (331)
161 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 1.5E-20 5.2E-25 190.9 21.5 325 108-476 58-433 (437)
162 3ruy_A Ornithine aminotransfer 99.9 1.2E-19 3.9E-24 181.6 26.9 293 117-476 79-391 (392)
163 3qgu_A LL-diaminopimelate amin 99.9 8.1E-20 2.8E-24 186.2 26.1 305 106-478 105-439 (449)
164 3acz_A Methionine gamma-lyase; 99.9 7.8E-20 2.7E-24 182.7 25.3 218 111-398 58-281 (389)
165 3b1d_A Betac-S lyase; HET: PLP 99.8 2.7E-23 9.3E-28 208.1 0.0 329 93-477 49-391 (392)
166 3t18_A Aminotransferase class 99.9 9.8E-20 3.4E-24 183.4 25.2 347 71-480 39-411 (413)
167 2fq6_A Cystathionine beta-lyas 99.9 4.6E-20 1.6E-24 185.3 22.0 288 110-474 80-413 (415)
168 4f4e_A Aromatic-amino-acid ami 99.8 2.1E-20 7.3E-25 188.8 19.4 327 91-476 70-419 (420)
169 3ei9_A LL-diaminopimelate amin 99.8 3.7E-20 1.3E-24 187.7 20.4 305 107-476 93-425 (432)
170 1n8p_A Cystathionine gamma-lya 99.8 4.7E-20 1.6E-24 184.4 20.1 285 111-475 54-391 (393)
171 1ajs_A Aspartate aminotransfer 99.8 5.2E-20 1.8E-24 185.4 20.1 326 91-478 51-410 (412)
172 2ord_A Acoat, acetylornithine 99.8 1.6E-19 5.5E-24 180.9 23.4 297 116-477 82-395 (397)
173 7aat_A Aspartate aminotransfer 99.8 9.7E-20 3.3E-24 182.7 21.6 325 92-476 50-400 (401)
174 3g7q_A Valine-pyruvate aminotr 99.8 6.1E-20 2.1E-24 185.1 19.7 332 91-481 49-415 (417)
175 3fkd_A L-threonine-O-3-phospha 99.8 4E-19 1.4E-23 174.8 25.0 278 121-477 55-340 (350)
176 2eh6_A Acoat, acetylornithine 99.8 3.6E-19 1.2E-23 176.8 24.6 286 120-475 74-374 (375)
177 1sff_A 4-aminobutyrate aminotr 99.8 3.8E-18 1.3E-22 172.4 32.4 317 118-479 86-424 (426)
178 3ez1_A Aminotransferase MOCR f 99.8 8.1E-19 2.8E-23 177.3 25.7 312 107-481 64-417 (423)
179 1yaa_A Aspartate aminotransfer 99.8 1.4E-19 4.8E-24 182.3 19.8 323 90-478 49-410 (412)
180 3cog_A Cystathionine gamma-lya 99.8 3.5E-19 1.2E-23 178.7 22.4 285 110-476 65-399 (403)
181 3dxv_A Alpha-amino-epsilon-cap 99.8 3.1E-18 1.1E-22 173.9 29.1 318 113-479 83-425 (439)
182 3meb_A Aspartate aminotransfer 99.8 2.8E-18 9.6E-23 174.6 28.4 359 52-478 35-443 (448)
183 2ay1_A Aroat, aromatic amino a 99.8 2.9E-19 1E-23 178.7 20.6 320 91-475 47-392 (394)
184 3ppl_A Aspartate aminotransfer 99.8 8E-19 2.7E-23 177.6 23.6 318 107-481 73-422 (427)
185 4adb_A Succinylornithine trans 99.8 9.4E-19 3.2E-23 175.7 23.8 303 116-481 81-402 (406)
186 3asa_A LL-diaminopimelate amin 99.8 2.9E-19 9.8E-24 179.3 19.8 305 107-480 70-394 (400)
187 2pb2_A Acetylornithine/succiny 99.8 7.6E-19 2.6E-23 177.4 22.8 304 115-480 98-419 (420)
188 1s0a_A Adenosylmethionine-8-am 99.8 4.4E-18 1.5E-22 172.2 28.4 309 118-479 88-424 (429)
189 3nmy_A Xometc, cystathionine g 99.8 1.3E-18 4.6E-23 173.9 24.0 246 110-433 65-335 (400)
190 3nx3_A Acoat, acetylornithine 99.8 2.3E-18 8E-23 172.3 25.5 299 115-477 77-393 (395)
191 1ibj_A CBL, cystathionine beta 99.8 2.5E-19 8.7E-24 182.4 18.6 281 116-477 133-460 (464)
192 3f6t_A Aspartate aminotransfer 99.8 5.1E-19 1.7E-23 183.7 20.7 363 89-484 117-530 (533)
193 1z7d_A Ornithine aminotransfer 99.8 1.3E-17 4.4E-22 168.9 30.4 305 116-480 107-430 (433)
194 3d6k_A Putative aminotransfera 99.8 2.2E-18 7.7E-23 174.0 24.4 315 107-481 71-420 (422)
195 1uu1_A Histidinol-phosphate am 99.8 5.4E-18 1.8E-22 165.8 25.5 294 91-475 35-334 (335)
196 3i4j_A Aminotransferase, class 99.8 8.8E-18 3E-22 170.1 27.7 326 114-479 70-428 (430)
197 3i16_A Aluminum resistance pro 99.8 1.7E-18 5.8E-23 173.7 21.9 254 112-435 73-355 (427)
198 2q7w_A Aspartate aminotransfer 99.8 7.1E-19 2.4E-23 176.0 18.9 319 92-475 48-395 (396)
199 2eo5_A 419AA long hypothetical 99.8 3E-17 1E-21 165.6 30.8 297 117-478 87-417 (419)
200 3jzl_A Putative cystathionine 99.8 2.1E-18 7E-23 172.5 21.7 251 113-435 60-338 (409)
201 2oat_A Ornithine aminotransfer 99.8 1.8E-17 6E-22 168.2 27.7 301 119-478 121-438 (439)
202 4a6r_A Omega transaminase; tra 99.8 6.3E-17 2.2E-21 165.2 30.1 327 114-482 92-452 (459)
203 2aeu_A Hypothetical protein MJ 99.8 3.1E-18 1.1E-22 170.1 19.6 296 115-480 57-372 (374)
204 3a8u_X Omega-amino acid--pyruv 99.8 1.8E-16 6.3E-21 161.3 33.1 324 116-479 93-447 (449)
205 3tfu_A Adenosylmethionine-8-am 99.8 2.9E-17 9.9E-22 167.4 27.0 314 115-480 117-454 (457)
206 1zod_A DGD, 2,2-dialkylglycine 99.8 2.2E-17 7.6E-22 167.2 25.9 320 116-479 85-432 (433)
207 3n5m_A Adenosylmethionine-8-am 99.8 1.2E-16 4E-21 162.9 31.0 324 113-477 88-450 (452)
208 4eu1_A Mitochondrial aspartate 99.8 1.7E-17 5.9E-22 166.8 23.3 310 101-476 68-408 (409)
209 3gju_A Putative aminotransfera 99.8 1.7E-16 5.8E-21 162.1 30.5 329 115-481 94-458 (460)
210 3dod_A Adenosylmethionine-8-am 99.8 4.6E-16 1.6E-20 158.3 33.4 325 114-481 85-445 (448)
211 3i5t_A Aminotransferase; pyrid 99.8 4E-16 1.4E-20 159.7 31.9 330 114-482 95-457 (476)
212 3hmu_A Aminotransferase, class 99.8 2.2E-16 7.5E-21 161.5 29.8 322 115-481 98-454 (472)
213 3hvy_A Cystathionine beta-lyas 99.8 3E-17 1E-21 164.6 22.7 251 113-434 75-354 (427)
214 4ffc_A 4-aminobutyrate aminotr 99.8 2.9E-16 1E-20 159.9 30.2 320 113-481 104-451 (453)
215 3oks_A 4-aminobutyrate transam 99.8 3E-16 1E-20 159.7 30.3 336 92-477 81-449 (451)
216 2cjg_A L-lysine-epsilon aminot 99.8 1.8E-16 6E-21 161.4 26.4 316 116-479 101-448 (449)
217 3l44_A Glutamate-1-semialdehyd 99.8 1.2E-16 4.1E-21 162.0 25.0 304 117-481 96-432 (434)
218 3k28_A Glutamate-1-semialdehyd 99.7 9.1E-17 3.1E-21 162.6 22.8 306 119-479 96-427 (429)
219 1ohv_A 4-aminobutyrate aminotr 99.7 7.6E-16 2.6E-20 157.5 28.5 313 114-478 108-470 (472)
220 3fq8_A Glutamate-1-semialdehyd 99.7 3E-16 1E-20 158.7 24.3 306 114-478 90-426 (427)
221 3ht4_A Aluminum resistance pro 99.7 6.8E-17 2.3E-21 162.8 19.1 252 118-435 67-344 (431)
222 2epj_A Glutamate-1-semialdehyd 99.7 7.5E-16 2.6E-20 156.1 26.2 307 115-480 95-432 (434)
223 2cy8_A D-phgat, D-phenylglycin 99.7 1.3E-15 4.6E-20 155.1 28.2 306 114-481 95-437 (453)
224 4e77_A Glutamate-1-semialdehyd 99.7 2E-15 6.9E-20 152.7 26.9 302 116-477 93-427 (429)
225 3ou5_A Serine hydroxymethyltra 99.7 3.3E-15 1.1E-19 146.1 25.1 329 107-477 91-439 (490)
226 2zy4_A L-aspartate beta-decarb 99.7 1.4E-15 4.8E-20 158.0 21.5 351 107-484 133-527 (546)
227 3bwn_A AT1G70560, L-tryptophan 99.7 3.1E-15 1.1E-19 149.3 23.0 295 106-478 57-386 (391)
228 3k7y_A Aspartate aminotransfer 99.7 6.9E-16 2.4E-20 154.3 16.7 327 89-478 48-404 (405)
229 2e7u_A Glutamate-1-semialdehyd 99.7 1.8E-14 6.3E-19 145.3 24.4 302 115-475 91-423 (424)
230 4ao9_A Beta-phenylalanine amin 99.6 1.6E-13 5.3E-18 138.1 25.6 303 117-480 128-447 (454)
231 2hox_A ALLIIN lyase 1; cystein 99.6 1.4E-14 4.7E-19 146.3 14.5 304 90-476 71-422 (427)
232 4atq_A 4-aminobutyrate transam 99.5 4.8E-11 1.7E-15 120.5 35.4 318 117-478 108-454 (456)
233 4h51_A Aspartate aminotransfer 99.5 3.4E-13 1.2E-17 134.9 18.7 331 92-481 66-419 (420)
234 4e3q_A Pyruvate transaminase; 99.5 8.4E-12 2.9E-16 126.5 25.5 331 115-482 110-471 (473)
235 2yky_A Beta-transaminase; tran 99.2 3.8E-15 1.3E-19 150.9 0.0 304 115-480 139-461 (465)
236 4a0g_A Adenosylmethionine-8-am 99.3 5E-11 1.7E-15 128.9 20.8 327 121-479 429-828 (831)
237 4g81_D Putative hexonate dehyd 78.5 13 0.00043 33.6 10.0 68 175-250 33-103 (255)
238 2pju_A Propionate catabolism o 69.9 38 0.0013 29.8 10.5 68 174-265 107-174 (225)
239 4fgs_A Probable dehydrogenase 69.9 19 0.00064 32.9 8.9 66 177-251 56-121 (273)
240 2q5c_A NTRC family transcripti 66.5 29 0.00099 29.8 9.0 67 175-265 96-162 (196)
241 1tks_A 3,4-dihydroxy-2-butanon 62.2 15 0.00052 31.7 6.1 52 216-267 142-193 (204)
242 3grp_A 3-oxoacyl-(acyl carrier 59.4 47 0.0016 29.8 9.5 65 177-250 54-118 (266)
243 3m0z_A Putative aldolase; MCSG 59.3 28 0.00095 30.5 7.1 71 186-269 145-218 (249)
244 3mio_A DHBP synthase, 3,4-dihy 53.5 32 0.0011 29.7 6.6 52 216-267 141-193 (206)
245 4dqx_A Probable oxidoreductase 53.2 59 0.002 29.3 9.1 64 177-249 54-117 (277)
246 3rwb_A TPLDH, pyridoxal 4-dehy 52.8 50 0.0017 29.1 8.4 65 177-249 32-96 (247)
247 3fkr_A L-2-keto-3-deoxyarabona 52.6 16 0.00056 34.0 5.2 63 205-269 18-83 (309)
248 3l21_A DHDPS, dihydrodipicolin 52.4 18 0.00063 33.5 5.5 57 212-268 30-89 (304)
249 2wkj_A N-acetylneuraminate lya 52.1 12 0.00039 34.9 4.0 57 212-268 26-85 (303)
250 3o38_A Short chain dehydrogena 52.0 66 0.0023 28.5 9.2 45 200-249 73-117 (266)
251 3h8q_A Thioredoxin reductase 3 52.0 75 0.0026 24.1 10.3 73 174-256 17-91 (114)
252 3gvc_A Oxidoreductase, probabl 51.0 59 0.002 29.3 8.7 64 177-249 56-119 (277)
253 4e6p_A Probable sorbitol dehyd 50.4 71 0.0024 28.3 9.1 64 177-249 35-98 (259)
254 3dz1_A Dihydrodipicolinate syn 50.2 20 0.00067 33.5 5.3 57 212-268 23-81 (313)
255 1f6k_A N-acetylneuraminate lya 49.5 22 0.00077 32.7 5.6 57 212-268 18-78 (293)
256 3lyl_A 3-oxoacyl-(acyl-carrier 49.2 1.1E+02 0.0037 26.6 10.2 48 194-249 51-98 (247)
257 3m6y_A 4-hydroxy-2-oxoglutarat 48.8 21 0.00074 31.5 4.8 70 187-269 169-241 (275)
258 3cpr_A Dihydrodipicolinate syn 48.5 24 0.00081 32.8 5.6 57 212-268 31-90 (304)
259 4ibo_A Gluconate dehydrogenase 48.5 1.1E+02 0.0038 27.3 10.2 44 201-249 76-119 (271)
260 3s5o_A 4-hydroxy-2-oxoglutarat 47.1 23 0.00077 33.0 5.2 61 206-268 25-88 (307)
261 3rjz_A N-type ATP pyrophosphat 46.5 1.3E+02 0.0043 26.7 9.7 97 143-267 8-120 (237)
262 4eso_A Putative oxidoreductase 46.1 59 0.002 28.8 7.8 64 177-249 35-98 (255)
263 1xky_A Dihydrodipicolinate syn 45.7 10 0.00035 35.2 2.6 57 212-268 27-86 (301)
264 1g57_A DHBP synthase, 3,4-dihy 45.6 45 0.0015 29.1 6.4 51 216-267 150-200 (217)
265 4dpp_A DHDPS 2, dihydrodipicol 45.2 28 0.00094 33.2 5.5 57 212-268 74-133 (360)
266 2r8w_A AGR_C_1641P; APC7498, d 44.9 23 0.0008 33.3 5.0 57 212-268 49-108 (332)
267 3flu_A DHDPS, dihydrodipicolin 44.5 20 0.00067 33.2 4.3 57 212-268 22-81 (297)
268 3tfo_A Putative 3-oxoacyl-(acy 43.7 91 0.0031 27.8 8.7 44 201-249 54-97 (264)
269 3m1a_A Putative dehydrogenase; 43.6 1.7E+02 0.006 25.9 11.3 64 177-249 32-95 (281)
270 3b4u_A Dihydrodipicolinate syn 43.5 21 0.00073 32.9 4.4 51 212-262 18-68 (294)
271 3na8_A Putative dihydrodipicol 43.5 17 0.00059 33.9 3.8 57 212-268 39-98 (315)
272 3v2h_A D-beta-hydroxybutyrate 43.3 1.3E+02 0.0046 26.9 9.9 69 176-249 51-120 (281)
273 3l6e_A Oxidoreductase, short-c 43.3 55 0.0019 28.6 7.0 65 176-249 29-93 (235)
274 3h7a_A Short chain dehydrogena 43.0 1E+02 0.0035 27.1 8.9 43 201-249 57-99 (252)
275 3si9_A DHDPS, dihydrodipicolin 42.8 18 0.00061 33.8 3.8 57 212-268 37-96 (315)
276 3imf_A Short chain dehydrogena 42.5 1.3E+02 0.0045 26.4 9.6 67 177-249 33-99 (257)
277 1uta_A FTSN, MSGA, cell divisi 42.4 28 0.00095 24.8 4.0 48 423-475 21-69 (81)
278 1snn_A DHBP synthase, 3,4-dihy 42.3 51 0.0018 28.9 6.3 51 216-267 161-211 (227)
279 1hxh_A 3BETA/17BETA-hydroxyste 42.1 1.5E+02 0.0051 25.9 9.9 64 177-249 33-96 (253)
280 3rih_A Short chain dehydrogena 41.9 1.7E+02 0.0057 26.5 10.4 69 176-250 67-136 (293)
281 3ctg_A Glutaredoxin-2; reduced 41.9 84 0.0029 24.6 7.2 72 174-255 37-114 (129)
282 3tak_A DHDPS, dihydrodipicolin 41.6 19 0.00066 33.1 3.7 57 212-268 16-75 (291)
283 2nuw_A 2-keto-3-deoxygluconate 41.3 18 0.00063 33.2 3.6 51 212-262 14-64 (288)
284 2ojp_A DHDPS, dihydrodipicolin 40.8 20 0.00068 33.0 3.7 51 212-262 16-66 (292)
285 3qze_A DHDPS, dihydrodipicolin 40.7 20 0.00069 33.4 3.8 57 212-268 38-97 (314)
286 1w3i_A EDA, 2-keto-3-deoxy glu 40.7 22 0.00077 32.7 4.1 51 212-262 14-64 (293)
287 3op4_A 3-oxoacyl-[acyl-carrier 40.6 83 0.0028 27.6 7.9 64 177-249 36-99 (248)
288 3n74_A 3-ketoacyl-(acyl-carrie 40.6 1.9E+02 0.0064 25.3 10.6 60 177-245 36-95 (261)
289 3u5t_A 3-oxoacyl-[acyl-carrier 40.5 1.4E+02 0.0047 26.6 9.4 44 201-249 78-121 (267)
290 3ghf_A Septum site-determining 40.2 73 0.0025 24.8 6.4 50 214-267 24-78 (120)
291 4dyv_A Short-chain dehydrogena 40.1 1.1E+02 0.0037 27.4 8.7 59 177-244 55-113 (272)
292 2v9d_A YAGE; dihydrodipicolini 39.8 26 0.0009 33.1 4.4 55 206-262 42-96 (343)
293 3sju_A Keto reductase; short-c 39.2 99 0.0034 27.7 8.3 44 201-249 74-117 (279)
294 3e96_A Dihydrodipicolinate syn 39.1 22 0.00076 33.2 3.8 50 213-262 28-77 (316)
295 3v8b_A Putative dehydrogenase, 39.0 1.4E+02 0.0047 26.8 9.3 62 177-244 55-116 (283)
296 3h5d_A DHDPS, dihydrodipicolin 38.5 20 0.00069 33.3 3.4 51 212-262 22-72 (311)
297 2hmc_A AGR_L_411P, dihydrodipi 38.4 36 0.0012 32.1 5.2 56 212-267 41-96 (344)
298 4fs3_A Enoyl-[acyl-carrier-pro 38.4 1.6E+02 0.0056 25.9 9.5 63 176-244 34-97 (256)
299 3gdg_A Probable NADP-dependent 37.1 2.1E+02 0.0073 25.0 10.4 48 194-249 70-117 (267)
300 3tjr_A Short chain dehydrogena 36.6 1.2E+02 0.0042 27.5 8.6 44 201-249 81-124 (301)
301 3osu_A 3-oxoacyl-[acyl-carrier 36.0 1.5E+02 0.005 25.9 8.7 48 194-249 51-98 (246)
302 3oid_A Enoyl-[acyl-carrier-pro 35.9 1.6E+02 0.0055 25.9 9.1 44 201-249 55-98 (258)
303 2yxg_A DHDPS, dihydrodipicolin 35.9 31 0.0011 31.6 4.2 56 213-268 16-74 (289)
304 3tpc_A Short chain alcohol deh 35.4 1.1E+02 0.0037 27.0 7.8 62 177-247 34-95 (257)
305 4gqr_A Pancreatic alpha-amylas 35.3 18 0.00061 35.8 2.7 31 242-272 69-99 (496)
306 3d0c_A Dihydrodipicolinate syn 35.2 28 0.00097 32.4 3.8 57 212-268 27-86 (314)
307 4fn4_A Short chain dehydrogena 35.2 1.5E+02 0.0052 26.3 8.6 42 194-243 53-94 (254)
308 3eb2_A Putative dihydrodipicol 34.8 19 0.00064 33.4 2.5 57 212-268 19-78 (300)
309 2b4q_A Rhamnolipids biosynthes 34.5 1.4E+02 0.0048 26.6 8.5 44 201-249 78-121 (276)
310 1x60_A Sporulation-specific N- 34.3 39 0.0013 23.8 3.7 47 423-474 21-68 (79)
311 2ehh_A DHDPS, dihydrodipicolin 33.7 35 0.0012 31.4 4.1 56 213-268 16-74 (294)
312 1x1t_A D(-)-3-hydroxybutyrate 33.5 2.1E+02 0.007 25.1 9.4 43 201-248 56-98 (260)
313 3qfe_A Putative dihydrodipicol 33.1 26 0.00088 32.8 3.1 57 212-268 26-85 (318)
314 3a5f_A Dihydrodipicolinate syn 33.0 46 0.0016 30.5 4.8 50 212-262 17-66 (291)
315 2ew8_A (S)-1-phenylethanol deh 32.6 2E+02 0.0069 25.0 9.1 65 176-248 33-97 (249)
316 4fc7_A Peroxisomal 2,4-dienoyl 32.4 1.4E+02 0.0048 26.6 8.1 44 201-249 78-121 (277)
317 3m5v_A DHDPS, dihydrodipicolin 32.4 31 0.0011 31.8 3.6 57 212-268 22-82 (301)
318 2jah_A Clavulanic acid dehydro 32.3 1.8E+02 0.0061 25.3 8.7 44 201-249 57-100 (247)
319 3edm_A Short chain dehydrogena 32.2 2.4E+02 0.0084 24.6 9.7 44 201-249 59-103 (259)
320 2a4k_A 3-oxoacyl-[acyl carrier 32.1 1.5E+02 0.005 26.3 8.1 64 176-248 32-95 (263)
321 3v2g_A 3-oxoacyl-[acyl-carrier 31.7 2E+02 0.0069 25.5 9.0 44 201-249 82-125 (271)
322 3pk0_A Short-chain dehydrogena 31.7 2.1E+02 0.0072 25.1 9.2 44 201-249 61-104 (262)
323 1geg_A Acetoin reductase; SDR 31.5 2E+02 0.0067 25.1 8.9 44 201-249 52-95 (256)
324 1g94_A Alpha-amylase; beta-alp 31.4 23 0.00078 34.8 2.7 32 242-273 57-88 (448)
325 1xpp_A TA1416, DNA-directed RN 31.2 1.8E+02 0.0062 22.4 9.4 86 389-483 7-96 (115)
326 4gkb_A 3-oxoacyl-[acyl-carrier 31.2 2.8E+02 0.0095 24.6 10.1 62 176-245 33-95 (258)
327 1vl8_A Gluconate 5-dehydrogena 31.0 1.9E+02 0.0065 25.5 8.7 44 201-249 72-115 (267)
328 3is3_A 17BETA-hydroxysteroid d 30.7 1.5E+02 0.0053 26.2 8.1 48 194-249 65-112 (270)
329 1k4i_A 3,4-dihydroxy-2-butanon 30.6 84 0.0029 27.6 5.7 52 216-267 150-211 (233)
330 3tox_A Short chain dehydrogena 30.6 2.6E+02 0.009 24.9 9.7 39 201-244 58-96 (280)
331 4dmm_A 3-oxoacyl-[acyl-carrier 30.6 1.4E+02 0.0047 26.6 7.7 44 201-249 79-122 (269)
332 3ftp_A 3-oxoacyl-[acyl-carrier 30.5 2.2E+02 0.0074 25.3 9.0 48 194-249 74-121 (270)
333 3ff4_A Uncharacterized protein 30.3 60 0.0021 25.3 4.4 47 216-272 67-113 (122)
334 3nvt_A 3-deoxy-D-arabino-heptu 30.2 2E+02 0.0068 27.5 8.9 82 185-275 238-323 (385)
335 4egf_A L-xylulose reductase; s 30.2 1.7E+02 0.006 25.8 8.3 47 195-249 68-114 (266)
336 2rhc_B Actinorhodin polyketide 30.1 2.2E+02 0.0077 25.2 9.1 43 201-248 72-114 (277)
337 2r91_A 2-keto-3-deoxy-(6-phosp 29.9 29 0.00099 31.8 2.9 50 213-262 14-63 (286)
338 2pa8_L DNA-directed RNA polyme 29.7 1.7E+02 0.0057 21.5 9.9 74 405-484 11-88 (92)
339 3ged_A Short-chain dehydrogena 29.7 1.5E+02 0.0051 26.3 7.5 46 201-251 48-93 (247)
340 2h7i_A Enoyl-[acyl-carrier-pro 29.6 1.8E+02 0.0062 25.7 8.3 62 176-245 35-99 (269)
341 3l4n_A Monothiol glutaredoxin- 29.4 1.8E+02 0.0062 22.6 7.2 72 174-255 14-90 (127)
342 1w6u_A 2,4-dienoyl-COA reducta 29.3 2.4E+02 0.0081 25.2 9.3 42 201-247 77-118 (302)
343 1hdc_A 3-alpha, 20 beta-hydrox 29.2 1.5E+02 0.0051 26.0 7.6 63 176-247 31-93 (254)
344 1zco_A 2-dehydro-3-deoxyphosph 28.9 1.6E+02 0.0053 26.5 7.5 87 182-276 116-205 (262)
345 1o5k_A DHDPS, dihydrodipicolin 28.8 33 0.0011 31.8 3.1 51 212-262 27-77 (306)
346 1yb1_A 17-beta-hydroxysteroid 28.6 3E+02 0.01 24.2 10.2 44 201-249 81-124 (272)
347 1mxg_A Alpha amylase; hyperthe 28.6 29 0.001 33.9 2.8 30 243-272 80-109 (435)
348 3bh4_A Alpha-amylase; calcium, 28.6 28 0.00097 34.5 2.8 32 242-273 71-102 (483)
349 3ai3_A NADPH-sorbose reductase 28.6 2.2E+02 0.0074 25.0 8.7 44 201-249 58-101 (263)
350 2pcq_A Putative dihydrodipicol 28.5 20 0.00068 32.9 1.5 58 206-267 9-66 (283)
351 3zv4_A CIS-2,3-dihydrobiphenyl 28.4 1.8E+02 0.0062 25.9 8.2 60 176-244 31-90 (281)
352 2o23_A HADH2 protein; HSD17B10 28.3 2.5E+02 0.0086 24.4 9.1 63 176-247 38-100 (265)
353 3ak4_A NADH-dependent quinucli 28.3 1.6E+02 0.0056 25.8 7.8 42 201-247 59-100 (263)
354 1ud2_A Amylase, alpha-amylase; 28.1 29 0.00098 34.4 2.7 32 242-273 73-104 (480)
355 1j0a_A 1-aminocyclopropane-1-c 28.0 1.4E+02 0.0049 27.5 7.5 31 175-208 97-128 (325)
356 3lf2_A Short chain oxidoreduct 27.9 2E+02 0.007 25.2 8.4 44 201-249 60-103 (265)
357 3kzv_A Uncharacterized oxidore 27.8 2.5E+02 0.0084 24.5 8.8 60 176-243 29-88 (254)
358 3nyw_A Putative oxidoreductase 27.7 2.6E+02 0.0089 24.3 8.9 44 201-249 60-103 (250)
359 2q2v_A Beta-D-hydroxybutyrate 27.7 2.8E+02 0.0096 24.1 9.2 42 201-247 52-93 (255)
360 3l77_A Short-chain alcohol deh 27.6 1.4E+02 0.0048 25.7 7.0 48 195-250 50-97 (235)
361 3ezl_A Acetoacetyl-COA reducta 27.5 3E+02 0.01 23.8 10.9 51 191-249 57-107 (256)
362 1wpc_A Glucan 1,4-alpha-maltoh 27.4 31 0.0011 34.2 2.8 32 242-273 75-106 (485)
363 1x7f_A Outer surface protein; 27.3 76 0.0026 30.4 5.3 60 214-273 37-97 (385)
364 3cxt_A Dehydrogenase with diff 27.3 2.5E+02 0.0087 25.2 9.0 43 201-248 84-126 (291)
365 1hvx_A Alpha-amylase; hydrolas 27.3 30 0.001 34.7 2.7 30 243-272 75-104 (515)
366 3tzq_B Short-chain type dehydr 27.2 2.2E+02 0.0075 25.2 8.5 59 177-244 38-96 (271)
367 3r1i_A Short-chain type dehydr 27.2 1.5E+02 0.005 26.5 7.3 44 201-249 82-125 (276)
368 1lwj_A 4-alpha-glucanotransfer 27.1 29 0.00099 34.0 2.5 29 243-271 63-91 (441)
369 3qp9_A Type I polyketide synth 27.0 3.3E+02 0.011 27.1 10.4 59 191-258 309-369 (525)
370 3pgx_A Carveol dehydrogenase; 27.0 1.5E+02 0.0052 26.4 7.4 44 201-249 78-121 (280)
371 3gk3_A Acetoacetyl-COA reducta 26.9 2.4E+02 0.0082 24.8 8.7 44 201-249 76-119 (269)
372 3dhu_A Alpha-amylase; structur 26.6 30 0.001 33.9 2.6 29 243-271 77-105 (449)
373 2p0o_A Hypothetical protein DU 26.3 1.2E+02 0.004 28.9 6.3 59 215-273 14-73 (372)
374 2guy_A Alpha-amylase A; (beta- 26.2 29 0.001 34.4 2.4 31 242-272 90-120 (478)
375 1iy8_A Levodione reductase; ox 26.2 2.5E+02 0.0084 24.7 8.6 40 201-245 65-104 (267)
376 4ggo_A Trans-2-enoyl-COA reduc 26.1 4.4E+02 0.015 25.2 11.6 48 188-243 103-150 (401)
377 3ic4_A Glutaredoxin (GRX-1); s 26.1 1.7E+02 0.0059 20.5 7.6 74 174-259 12-90 (92)
378 3kvo_A Hydroxysteroid dehydrog 26.1 2.3E+02 0.008 26.3 8.7 50 192-249 96-145 (346)
379 2uvd_A 3-oxoacyl-(acyl-carrier 26.1 2.9E+02 0.0099 23.8 9.0 43 201-248 55-97 (246)
380 2pjk_A 178AA long hypothetical 26.0 2E+02 0.0068 24.0 7.3 60 186-256 43-103 (178)
381 1ae1_A Tropinone reductase-I; 26.0 3.4E+02 0.012 23.9 9.5 44 201-249 71-115 (273)
382 3ezx_A MMCP 1, monomethylamine 25.8 2.4E+02 0.0082 24.2 8.0 69 188-270 112-184 (215)
383 3kbq_A Protein TA0487; structu 25.8 2.6E+02 0.0089 23.2 7.8 59 186-256 26-84 (172)
384 1qwg_A PSL synthase;, (2R)-pho 25.8 3.5E+02 0.012 24.0 9.1 79 184-271 86-169 (251)
385 3rag_A Uncharacterized protein 25.8 63 0.0022 28.7 4.2 36 234-271 11-46 (242)
386 1gcy_A Glucan 1,4-alpha-maltot 25.7 32 0.0011 34.6 2.6 27 244-270 87-113 (527)
387 3awd_A GOX2181, putative polyo 25.7 3E+02 0.01 23.7 9.1 40 201-245 63-102 (260)
388 3rkr_A Short chain oxidoreduct 25.7 1.8E+02 0.0062 25.5 7.6 38 201-243 79-116 (262)
389 1ht6_A AMY1, alpha-amylase iso 25.3 32 0.0011 33.3 2.4 29 244-272 63-91 (405)
390 3gaf_A 7-alpha-hydroxysteroid 25.2 2.7E+02 0.0091 24.3 8.6 44 201-249 62-105 (256)
391 4imr_A 3-oxoacyl-(acyl-carrier 25.1 2.9E+02 0.01 24.4 8.9 43 201-249 83-125 (275)
392 3tsc_A Putative oxidoreductase 25.1 1.8E+02 0.0063 25.7 7.5 44 201-249 74-117 (277)
393 2whl_A Beta-mannanase, baman5; 25.0 80 0.0028 28.6 5.0 39 190-231 38-77 (294)
394 4iiu_A 3-oxoacyl-[acyl-carrier 25.0 2.1E+02 0.0072 25.1 7.9 44 201-249 77-120 (267)
395 3oec_A Carveol dehydrogenase ( 24.9 2.3E+02 0.0079 25.8 8.3 45 201-250 108-152 (317)
396 2qv5_A AGR_C_5032P, uncharacte 24.8 3.3E+02 0.011 24.3 8.8 87 178-267 60-159 (261)
397 4iin_A 3-ketoacyl-acyl carrier 24.8 2.4E+02 0.0083 24.8 8.3 49 193-249 75-123 (271)
398 1zem_A Xylitol dehydrogenase; 24.7 2.8E+02 0.0097 24.2 8.7 39 201-244 57-95 (262)
399 3p9x_A Phosphoribosylglycinami 24.4 2.6E+02 0.009 24.0 7.9 54 143-207 6-60 (211)
400 4aie_A Glucan 1,6-alpha-glucos 24.3 34 0.0012 34.4 2.5 31 242-272 72-102 (549)
401 3ijr_A Oxidoreductase, short c 24.3 3.3E+02 0.011 24.4 9.1 39 201-244 98-136 (291)
402 2wci_A Glutaredoxin-4; redox-a 24.2 2.6E+02 0.009 21.9 8.1 68 174-254 35-109 (135)
403 3ioy_A Short-chain dehydrogena 24.1 1.7E+02 0.0059 26.8 7.2 44 201-249 60-103 (319)
404 3a28_C L-2.3-butanediol dehydr 23.9 2.2E+02 0.0076 24.8 7.8 43 201-248 54-96 (258)
405 3rhb_A ATGRXC5, glutaredoxin-C 23.9 2.2E+02 0.0076 21.0 6.7 72 174-254 19-92 (113)
406 3ndz_A Endoglucanase D; cellot 23.9 1.6E+02 0.0056 27.4 7.1 41 188-231 47-96 (345)
407 3i4f_A 3-oxoacyl-[acyl-carrier 23.7 1.8E+02 0.0061 25.5 7.1 37 201-242 58-94 (264)
408 2llz_A Uncharacterized protein 23.7 93 0.0032 23.1 3.9 64 404-475 11-78 (100)
409 1bqc_A Protein (beta-mannanase 23.7 99 0.0034 28.1 5.4 19 188-209 37-55 (302)
410 1wza_A Alpha-amylase A; hydrol 23.6 34 0.0012 34.0 2.3 29 243-271 75-103 (488)
411 3vup_A Beta-1,4-mannanase; TIM 23.5 86 0.0029 28.5 5.0 23 248-270 88-110 (351)
412 1nff_A Putative oxidoreductase 23.5 2.6E+02 0.009 24.4 8.2 44 201-249 54-97 (260)
413 3icg_A Endoglucanase D; cellul 23.4 1.6E+02 0.0055 29.3 7.2 41 188-231 50-99 (515)
414 1h5q_A NADP-dependent mannitol 23.3 3.6E+02 0.012 23.3 9.7 43 201-248 65-107 (265)
415 1mxh_A Pteridine reductase 2; 23.3 2.8E+02 0.0096 24.4 8.4 44 201-249 63-110 (276)
416 2z1k_A (NEO)pullulanase; hydro 23.3 34 0.0012 33.8 2.2 15 217-231 96-110 (475)
417 2rfg_A Dihydrodipicolinate syn 23.2 40 0.0014 31.1 2.5 49 213-261 16-64 (297)
418 2dh2_A 4F2 cell-surface antige 23.2 36 0.0012 33.2 2.3 30 243-272 75-104 (424)
419 2pnf_A 3-oxoacyl-[acyl-carrier 23.1 3.5E+02 0.012 23.0 9.5 43 201-248 58-100 (248)
420 3s55_A Putative short-chain de 23.0 3.4E+02 0.012 23.9 9.0 44 201-249 72-115 (281)
421 3u9l_A 3-oxoacyl-[acyl-carrier 22.9 3E+02 0.01 25.2 8.6 48 194-249 56-103 (324)
422 3kts_A Glycerol uptake operon 22.8 37 0.0012 29.1 2.0 47 216-273 18-66 (192)
423 2e18_A NH(3)-dependent NAD(+) 22.8 2.8E+02 0.0095 24.4 8.2 74 115-208 7-84 (257)
424 2hze_A Glutaredoxin-1; thiored 22.8 2E+02 0.0069 21.4 6.3 81 174-264 19-110 (114)
425 3uve_A Carveol dehydrogenase ( 22.6 3E+02 0.01 24.4 8.5 42 201-247 77-118 (286)
426 3e03_A Short chain dehydrogena 22.6 3.5E+02 0.012 23.8 8.9 49 193-249 58-106 (274)
427 3sc4_A Short chain dehydrogena 22.6 2.4E+02 0.0082 25.2 7.8 51 192-250 60-110 (285)
428 3qiv_A Short-chain dehydrogena 22.6 2.3E+02 0.0078 24.5 7.5 38 201-243 59-96 (253)
429 1vr6_A Phospho-2-dehydro-3-deo 22.5 2.7E+02 0.0093 26.1 8.1 82 185-275 202-287 (350)
430 2aaa_A Alpha-amylase; glycosid 22.5 34 0.0012 33.9 2.0 33 241-273 89-121 (484)
431 3nco_A Endoglucanase fncel5A; 22.4 2.1E+02 0.0072 26.1 7.5 43 188-233 46-97 (320)
432 3rfq_A Pterin-4-alpha-carbinol 22.4 2.6E+02 0.0088 23.5 7.2 60 186-256 52-111 (185)
433 1j0h_A Neopullulanase; beta-al 22.3 38 0.0013 34.7 2.3 30 243-272 216-245 (588)
434 3qlj_A Short chain dehydrogena 22.3 2.5E+02 0.0087 25.6 8.0 44 201-249 87-130 (322)
435 1jae_A Alpha-amylase; glycosid 22.2 32 0.0011 34.0 1.8 31 242-272 67-97 (471)
436 2hq1_A Glucose/ribitol dehydro 21.9 3.7E+02 0.013 22.9 9.4 40 201-245 56-95 (247)
437 3jug_A Beta-mannanase; TIM-bar 21.8 1E+02 0.0034 29.0 5.0 39 190-231 61-100 (345)
438 1v77_A PH1877P, hypothetical p 21.7 1.4E+02 0.0046 25.7 5.6 76 184-270 85-167 (212)
439 3ppi_A 3-hydroxyacyl-COA dehyd 21.4 4.2E+02 0.014 23.3 11.5 59 177-245 57-116 (281)
440 3asu_A Short-chain dehydrogena 21.3 2.5E+02 0.0084 24.4 7.4 59 177-244 27-85 (248)
441 3daq_A DHDPS, dihydrodipicolin 21.2 67 0.0023 29.4 3.6 55 214-268 19-76 (292)
442 1g0o_A Trihydroxynaphthalene r 21.2 4.3E+02 0.015 23.3 9.5 44 201-249 80-123 (283)
443 3ucx_A Short chain dehydrogena 21.0 3.7E+02 0.013 23.4 8.7 38 201-243 61-98 (264)
444 3pxx_A Carveol dehydrogenase; 20.9 4.3E+02 0.015 23.2 9.7 42 201-247 72-113 (287)
445 1ua7_A Alpha-amylase; beta-alp 20.8 31 0.0011 33.5 1.3 27 245-271 70-96 (422)
446 3t7c_A Carveol dehydrogenase; 20.7 3E+02 0.01 24.7 8.1 42 201-247 90-131 (299)
447 2wc7_A Alpha amylase, catalyti 20.7 37 0.0013 33.7 1.9 15 217-231 102-116 (488)
448 2vc6_A MOSA, dihydrodipicolina 20.5 41 0.0014 30.9 2.0 50 213-262 16-65 (292)
449 2nly_A BH1492 protein, diverge 20.5 4.4E+02 0.015 23.2 8.8 78 188-269 44-133 (245)
450 1m53_A Isomaltulose synthase; 20.5 42 0.0014 34.1 2.2 30 216-248 91-120 (570)
451 2ae2_A Protein (tropinone redu 20.4 3.9E+02 0.013 23.2 8.7 43 201-248 59-102 (260)
452 3ksu_A 3-oxoacyl-acyl carrier 20.2 2.2E+02 0.0074 25.1 6.9 44 201-249 64-107 (262)
453 1wzl_A Alpha-amylase II; pullu 20.0 41 0.0014 34.4 2.0 28 244-271 214-241 (585)
454 1ea9_C Cyclomaltodextrinase; h 20.0 42 0.0014 34.3 2.1 30 243-272 212-241 (583)
No 1
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-73 Score=586.52 Aligned_cols=463 Identities=45% Similarity=0.847 Sum_probs=422.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhhcCCCCCCCCCCCHHHHHhhHHHHHHhhcCCCCcCCCCccc
Q 041829 1 MDAEQLRENAHKMVDFIADYYKSIENFPVLSQVQPGYLHNLIPDSAPHHPESLQNVLDGYIDIQEKILPGVTHWQSPNYF 80 (486)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~ 80 (486)
||.++||+.++++++.+.+|+++++++||.+..+|++++..++..+|++|.+.+++++ ++.+.+.++.++|+||+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~ 82 (481)
T 4e1o_A 6 MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFG---DIERIIMPGVVHWQSPHMH 82 (481)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSGGGSCSSCCCCTTTTGGGSCSSCCSSCCCHHHHHH---HHHHHTGGGCCCTTSTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHH---HHHHHHhcCCCCCCCCCee
Confidence 8999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcC---CCCCCeEEcCchhHHHHHHH
Q 041829 81 AYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLS---SGQGGGVIQGTASEAVLVVL 157 (486)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~---~~~~~~~~t~ggt~a~~~al 157 (486)
+|+++++.+++.+++++.+.+|++...|..+|..+++|+++++|+++++|++..+.. .+.++|++|+|||+||++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al 162 (481)
T 4e1o_A 83 AYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIAL 162 (481)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999875421 22347899999999999999
Q ss_pred HHHHHHHHHHhCccC--------CCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHh
Q 041829 158 LAARDKALKRVGKNS--------LEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLT 229 (486)
Q Consensus 158 ~~a~~~~~~~~~~~~--------~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~ 229 (486)
.++|++..++.+..+ .++++|+++..+|+|+.+++++.|. +++.||++. +++||+++|+++|+++++
T Consensus 163 ~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~---~~~~v~~~~--~~~~d~~~Le~~i~~~~~ 237 (481)
T 4e1o_A 163 LAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLV---KMKFLPVDD--NFSLRGEALQKAIEEDKQ 237 (481)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTC---EEEEECCCT--TSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCC---ceEEEEcCC--CCcCCHHHHHHHHHHHHh
Confidence 999987665421111 1678999999999999999999999 999999974 469999999999999888
Q ss_pred CCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcc
Q 041829 230 IGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDC 309 (486)
Q Consensus 230 ~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~ 309 (486)
+|..|++|++++|+|++|.+|||++|+++|++||+|+|||+||+++.+.+++++....+++.+||+++++|||+++|++|
T Consensus 238 ~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~ 317 (481)
T 4e1o_A 238 RGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDC 317 (481)
T ss_dssp TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSC
T ss_pred CCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCce
Confidence 88889999999999999999999999999999999999999999998888888888888889999999999999999999
Q ss_pred eEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHH
Q 041829 310 SALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGL 389 (486)
Q Consensus 310 g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~ 389 (486)
|+++++++..+.+.+...+.|+..... ....++.+++++++|++.++++|++++.+|.+|+++++++..++++++++.
T Consensus 318 g~l~~~~~~~l~~~~~~~~~yl~~~~~--~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~ 395 (481)
T 4e1o_A 318 TGFWVKDKYKLQQTFSVNPIYLRHANS--GVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESL 395 (481)
T ss_dssp EEEEESBHHHHHTTTCCCCGGGCCTTT--TTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHHHHHhcCCchhccCccc--CCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998777778888899876432 234567788999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHH
Q 041829 390 VAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAW 469 (486)
Q Consensus 390 l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~ 469 (486)
|+++|+|+++.++.+++++|++.+ .+..+.++.++|.++|.++++++.+.+..++|++++++.+|++||++++
T Consensus 396 L~~~~g~~~~~~~~~~~v~f~~~~-------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~ 468 (481)
T 4e1o_A 396 VRNDPSFEIPAKRHLGLVVFRLKG-------PNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDW 468 (481)
T ss_dssp HHTCTTEECCSCCCSSEEEEEESS-------CHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHH
T ss_pred HhcCCCeEEecCCceeEEEEEeCC-------chHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHH
Confidence 999999999988899999999964 3556788999999999888888889999999999988999999999999
Q ss_pred HHHHHHHHHHH
Q 041829 470 EVMQDKASALL 480 (486)
Q Consensus 470 ~~l~~~~~~l~ 480 (486)
++|+++++++.
T Consensus 469 ~~i~~~~~~l~ 479 (481)
T 4e1o_A 469 NLIRDAATLIL 479 (481)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988775
No 2
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=100.00 E-value=8.3e-74 Score=588.40 Aligned_cols=463 Identities=47% Similarity=0.876 Sum_probs=402.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhhcCCCCCCCCCCCHHHHHhhHHHHHHhhcCCCCcCCCCccc
Q 041829 1 MDAEQLRENAHKMVDFIADYYKSIENFPVLSQVQPGYLHNLIPDSAPHHPESLQNVLDGYIDIQEKILPGVTHWQSPNYF 80 (486)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~ 80 (486)
||.++||+.++++++.+.+|+++++++||.+..+|++++..++..+|++|.+.+++++ ++.+.+.++.++|+||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~ 77 (475)
T 3k40_A 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQ---DIERVIMPGVTHWHSPKFH 77 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCSSCTTCSGGGSCSSCCSSCCCHHHHHH---HHHHHTGGGCCCTTCTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHH---HHHHHHhccCCCCCCcCce
Confidence 8999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcC--CCCCCeEEcCchhHHHHHHHH
Q 041829 81 AYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLS--SGQGGGVIQGTASEAVLVVLL 158 (486)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~--~~~~~~~~t~ggt~a~~~al~ 158 (486)
||+++++.+++.+++++++.+|++...|..+|..+++|+++++|+++++|++.++.. .+.++|++|+|||+||++|+.
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~ 157 (475)
T 3k40_A 78 AYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALL 157 (475)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHH
T ss_pred eeCCCCCcHHHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999875321 122469999999999999999
Q ss_pred HHHHHHHHHhCccC--------CCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhC
Q 041829 159 AARDKALKRVGKNS--------LEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTI 230 (486)
Q Consensus 159 ~a~~~~~~~~~~~~--------~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~ 230 (486)
++|++..++.+..+ .++++|+++..+|+|+.+++++.|+ +++.||+++ ++ ||+++|+++|++++++
T Consensus 158 ~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~---~~~~v~~d~--~~-~d~~~L~~~i~~~~~~ 231 (475)
T 3k40_A 158 GAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGV---KLRSVQSEN--HR-MRGAALEKAIEQDVAE 231 (475)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTC---EEEEECCBT--TB-CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCC---ceEEEECCC--CC-cCHHHHHHHHHHHHHC
Confidence 99987654321111 1467899999999999999999999 999999974 47 9999999999999888
Q ss_pred CCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcce
Q 041829 231 GLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCS 310 (486)
Q Consensus 231 g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g 310 (486)
|..|++|++++++|++|.+||+++|+++|++||+|+|||+||+++.++++.++..+.+++.+||+++++|||+++|++||
T Consensus 232 ~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g 311 (475)
T 3k40_A 232 GLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCS 311 (475)
T ss_dssp TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCE
T ss_pred CCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceE
Confidence 88899999999999999999999999999999999999999999888888888888888899999999999999999999
Q ss_pred EEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHH
Q 041829 311 ALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLV 390 (486)
Q Consensus 311 ~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l 390 (486)
+++++++..+.+.+...++|+..... +..+++.++++++||++.++++|++++.+|.+|+++++++..++++++++.|
T Consensus 312 ~l~~~~~~~l~~~~~~~~~yl~~~~~--~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L 389 (475)
T 3k40_A 312 AMWLKDPSWVVNAFNVDPLYLKHDMQ--GSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLC 389 (475)
T ss_dssp EEEESSGGGC-----------------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHhcCCccccCCCcC--CCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987766677778889865432 2245677889999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHH
Q 041829 391 AQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWE 470 (486)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~ 470 (486)
+++|+|+++.++.+++++|++.+ .+..+.++.++|.++|.++++++.+.|..++|++++++.+|++||+++++
T Consensus 390 ~~~~g~~l~~~~~~~iv~f~~~~-------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~ 462 (475)
T 3k40_A 390 VADSRFELAAEINMGLVCFRLKG-------SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWK 462 (475)
T ss_dssp HHSTTEEESSCCBTTEEEEEESS-------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHH
T ss_pred hcCCCEEEecCCceEEEEEEeCC-------chHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999988899999999865 24567889999999999889999999999999999889999999999999
Q ss_pred HHHHHHHHHHH
Q 041829 471 VMQDKASALLA 481 (486)
Q Consensus 471 ~l~~~~~~l~~ 481 (486)
+|+++++++.+
T Consensus 463 ~i~~~~~~~~~ 473 (475)
T 3k40_A 463 EVSAAADEMEQ 473 (475)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999988774
No 3
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=100.00 E-value=4e-68 Score=549.47 Aligned_cols=467 Identities=50% Similarity=0.937 Sum_probs=404.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhhcCCCCCCCCCCCHHHHHhhHHHHHHhhcCCCCcCCCCccc
Q 041829 1 MDAEQLRENAHKMVDFIADYYKSIENFPVLSQVQPGYLHNLIPDSAPHHPESLQNVLDGYIDIQEKILPGVTHWQSPNYF 80 (486)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~ 80 (486)
||.++||++++++++.+.+|+++++++||.+..+|++++..++..+|++|.+++++++ ++.+.+.++..+|+||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~ 77 (486)
T 1js3_A 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQ---DVEKIIMPGVTHWHSPYFF 77 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCCCCTTCSGGGSCSSCCSSCCCHHHHHH---HHHHTTGGGCCCTTSTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHH---HHHHHHhcCCCCCCCCCce
Confidence 8999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcC--CCCCCeEEcCchhHHHHHHHH
Q 041829 81 AYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLS--SGQGGGVIQGTASEAVLVVLL 158 (486)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~--~~~~~~~~t~ggt~a~~~al~ 158 (486)
||+++++.+++.+++++++++|++...|..+|..+++|+++++|+++++|++.++.. .+.+++++|+|||+||++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~ 157 (486)
T 1js3_A 78 AYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALL 157 (486)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999864211 012368999999999999999
Q ss_pred HHHHHHHHHhCcc-CC-------CCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhC
Q 041829 159 AARDKALKRVGKN-SL-------EKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTI 230 (486)
Q Consensus 159 ~a~~~~~~~~~~~-~~-------~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~ 230 (486)
++++...++.+.. |. ++.+|+++..+|+++.++++.+|+ +++.||++. +|+||+++|+++|++++++
T Consensus 158 ~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~---~v~~v~~d~--~~~~d~~~L~~~i~~~~~~ 232 (486)
T 1js3_A 158 AARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGV---KLKAIPSDG--KFAMRASALQEALERDKAA 232 (486)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTC---EEEEECCCT--TSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCC---ceEEeecCC--CCCCCHHHHHHHHHHHHhC
Confidence 9887543321100 10 245689999999999999999999 999999974 4799999999999999988
Q ss_pred CCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcce
Q 041829 231 GLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCS 310 (486)
Q Consensus 231 g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g 310 (486)
|..|++|++++|+|++|.++|+++|+++|++||+|+|||+||+++.+.+++++..+.+++++|++++++|||+++|++||
T Consensus 233 g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G 312 (486)
T 1js3_A 233 GLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCS 312 (486)
T ss_dssp TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCE
T ss_pred CCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceE
Confidence 99999999999999999999999999999999999999999999888888787777788889999999999999999999
Q ss_pred EEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHH
Q 041829 311 ALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLV 390 (486)
Q Consensus 311 ~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l 390 (486)
+++++++..+.+.+...++|+...........++.+++++++|++.++++|++++.+|.+++++++++..++++++.+.|
T Consensus 313 ~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L 392 (486)
T 1js3_A 313 AMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFV 392 (486)
T ss_dssp EEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987666667667788865432112234566788899999999999999999999999999999999999999999
Q ss_pred hcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHH
Q 041829 391 AQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWE 470 (486)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~ 470 (486)
+++|+++++.+|.+++++|++.+ .+..+.++.++|.++|.++++++.+.+..++|++++++.+|++||+++++
T Consensus 393 ~~~~~~~~~~~~~~~~v~f~~~~-------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~ 465 (486)
T 1js3_A 393 LQDPRFEVCAEVTLGLVCFRLKG-------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWE 465 (486)
T ss_dssp HHCTTEEECSCCCSSEEEEEESS-------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHH
T ss_pred hcCCCeEEeCCCceeEEEEEecC-------hHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999887889999999864 23456788999999998888888888889999998889999999999999
Q ss_pred HHHHHHHHHHHh
Q 041829 471 VMQDKASALLAR 482 (486)
Q Consensus 471 ~l~~~~~~l~~~ 482 (486)
+|+++++++.++
T Consensus 466 ~l~~~~~~~~~~ 477 (486)
T 1js3_A 466 HIRGLAAELLAA 477 (486)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 999998877644
No 4
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=100.00 E-value=8.5e-68 Score=548.27 Aligned_cols=468 Identities=24% Similarity=0.392 Sum_probs=411.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCChhhhhhc---CCCCCCCCCCCHHHHHhhHHHHHHhhcCCCCcCCC
Q 041829 2 DAEQLRENAHKMVDFIADYYKSIENFP--VLSQVQPGYLHNL---IPDSAPHHPESLQNVLDGYIDIQEKILPGVTHWQS 76 (486)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~---~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 76 (486)
+.+++|..++++++.+.+|++++.++| |.+...|++++.. ++.++|++|.++++|++ ++.+.+.++ .+++|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~-~~~~~ 95 (511)
T 3vp6_A 20 GEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILV---DCRDTLKYG-VRTGH 95 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHHCBTTBCCCCCSSCCCHHHHHH---HHHHHHHTS-CCTTS
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCHHHHHH---HHHHHhhcc-CCCCC
Confidence 467899999999999999999987754 6788899999999 89999999999999999 998888777 46799
Q ss_pred CcccccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHH
Q 041829 77 PNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVV 156 (486)
Q Consensus 77 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~a 156 (486)
|+|+||+++++.+++.+++++++.+|++...|..+|..+++|+++++|+++++|++.+ ..++++|+|||+||+.|
T Consensus 96 p~f~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~-----~~~~~~t~ggt~a~~~a 170 (511)
T 3vp6_A 96 PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSK-----DGDGIFSPGGAISNMYS 170 (511)
T ss_dssp TTEESSSSCCCCHHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSS-----SCEEEEESSHHHHHHHH
T ss_pred CCceEeecCCCcHHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCC-----CCceEECCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999852 13699999999999999
Q ss_pred HHHHHHHHHHHh---CccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCc
Q 041829 157 LLAARDKALKRV---GKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLI 233 (486)
Q Consensus 157 l~~a~~~~~~~~---~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~ 233 (486)
+.+++++.++.. |..+.++++|+++..+|+|+.++++.+|+|..+++.||++. +|+||+++|+++|+++.++|..
T Consensus 171 l~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~--~~~~d~~~Le~~i~~~~~~g~~ 248 (511)
T 3vp6_A 171 IMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYV 248 (511)
T ss_dssp HHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCC--CCccCHHHHHHHHHHHHhcCCC
Confidence 999998653322 22223678999999999999999999999888899999985 3699999999999998888989
Q ss_pred cEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEE
Q 041829 234 PFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALW 313 (486)
Q Consensus 234 p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~ 313 (486)
|++|++++++|++|.+|||++|+++|++||+|+|||+||+++.+.+++++..+.|++++||+++++|||+++|.+||+++
T Consensus 249 ~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~ 328 (511)
T 3vp6_A 249 PFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAIL 328 (511)
T ss_dssp EEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEE
T ss_pred cEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEE
Confidence 99999999999999999999999999999999999999999999999888888889999999999999999999999999
Q ss_pred EeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcC
Q 041829 314 VKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQD 393 (486)
Q Consensus 314 ~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~ 393 (486)
++++..+...+...++|+...........++.+++++++|++.++++|++++.+|.+|+++++++..++++++++.|+++
T Consensus 329 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~ 408 (511)
T 3vp6_A 329 VKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR 408 (511)
T ss_dssp ESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred EeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99988777778888999976544334456778899999999999999999999999999999999999999999999999
Q ss_pred CCeEEec--CCCceEEEEEecCCCCCc--------ccchHHHHHHHHHHHccCcEEEEeeeECCE-eEEEEEecCCCCCH
Q 041829 394 LRFEVVT--PRIFSLVCFRLLPPHNDE--------DHGNKLNHKLLDDINSTGKIFISHTVLSGK-YILRFAVGAPLTEW 462 (486)
Q Consensus 394 ~~~~~~~--~~~~~~v~f~~~~~~~~~--------~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~-~~lRi~~~~~~~t~ 462 (486)
|+|+++. +|.+++++|++.|...+. ...+..+.++.++|.++|.+++......+. .++|++++++.+++
T Consensus 409 pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~ 488 (511)
T 3vp6_A 409 EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQ 488 (511)
T ss_dssp TTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCH
T ss_pred CCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCH
Confidence 9999987 688999999997643211 012344567899999999888876555553 58999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041829 463 RHVNAAWEVMQDKASALL 480 (486)
Q Consensus 463 ~di~~~~~~l~~~~~~l~ 480 (486)
+||++++++|+++++.+-
T Consensus 489 ~di~~ll~~i~~~~~~~~ 506 (511)
T 3vp6_A 489 SDIDFLIEEIERLGQDLH 506 (511)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999999987653
No 5
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=100.00 E-value=1.4e-64 Score=524.96 Aligned_cols=468 Identities=24% Similarity=0.391 Sum_probs=401.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCChhhhhhc---CCCCCCCCCCCHHHHHhhHHHHHHhhcCCCCcCC
Q 041829 1 MDAEQLRENAHKMVDFIADYYKSIENFP--VLSQVQPGYLHNL---IPDSAPHHPESLQNVLDGYIDIQEKILPGVTHWQ 75 (486)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~---~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 75 (486)
|+.+++|++++++++.+.+|++++.++| |.+..+|++++.. ++.++|++|.+++++++ ++.+.+.++. ++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~-~~~ 91 (504)
T 2okj_A 16 NGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILV---DCRDTLKYGV-RTG 91 (504)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHSCBTTBCCCCCSSCCCHHHHHH---HHHHHHHTSC-CTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHhhccCCCCCCCCCCHHHHHH---HHHHHhhccC-CCC
Confidence 7899999999999999999999987754 9999999999998 89999999999999999 8887776665 455
Q ss_pred CCcccccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHH
Q 041829 76 SPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLV 155 (486)
Q Consensus 76 ~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~ 155 (486)
||+|++|+++++.++..+++++++++|++...|..+|..+++|+++++|+++++|++.+ ..++++|+|||+||++
T Consensus 92 ~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~-----~~~~~~t~ggtea~~~ 166 (504)
T 2okj_A 92 HPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSK-----DGDGIFSPGGAISNMY 166 (504)
T ss_dssp CTTEESSSSCCCCHHHHHHHHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSS-----SCEEEEESSHHHHHHH
T ss_pred CCCEEEEccCCCCHHHHHHHHHHHhhccCCCchhhChHHHHHHHHHHHHHHHHhCCCCC-----CCCEEEeCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999831 1269999999999999
Q ss_pred HHHHHHHHHHHHhCccC---CCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCC
Q 041829 156 VLLAARDKALKRVGKNS---LEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGL 232 (486)
Q Consensus 156 al~~a~~~~~~~~~~~~---~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~ 232 (486)
++.+++++..+.....| .++.+|+++..+|+++.++++.+|+|.++++.||++. +|+||+++|+++|+++.++|.
T Consensus 167 al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~ 244 (504)
T 2okj_A 167 SIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGY 244 (504)
T ss_dssp HHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEecCC--CCCCCHHHHHHHHHHHHHCCC
Confidence 99999875432111111 1245899999999999999999999776899999975 479999999999998888888
Q ss_pred ccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEE
Q 041829 233 IPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSAL 312 (486)
Q Consensus 233 ~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l 312 (486)
.|++|++++|+|++|.++|+++|+++|++||+|+|||+||+++.+.+++++..+.+++++|++++++|||+++|++||++
T Consensus 245 ~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l 324 (504)
T 2okj_A 245 VPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAI 324 (504)
T ss_dssp EEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEE
T ss_pred CceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEE
Confidence 89999999999999999999999999999999999999999998888887777788889999999999999999999999
Q ss_pred EEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhc
Q 041829 313 WVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQ 392 (486)
Q Consensus 313 ~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~ 392 (486)
+++++..+...+...++|+..........+++.+++++++|+++++++|++++.+|.+|+++++++..++++++.+.|++
T Consensus 325 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~ 404 (504)
T 2okj_A 325 LVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKN 404 (504)
T ss_dssp EESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99997666666777888986543222223566778899999999999999999999999999999999999999999999
Q ss_pred CCCeEEec--CCCceEEEEEecCCCC----Cc----ccchHHHHHHHHHHHccCcEEEEeeeECCE-eEEEEEecCCCCC
Q 041829 393 DLRFEVVT--PRIFSLVCFRLLPPHN----DE----DHGNKLNHKLLDDINSTGKIFISHTVLSGK-YILRFAVGAPLTE 461 (486)
Q Consensus 393 ~~~~~~~~--~~~~~~v~f~~~~~~~----~~----~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~-~~lRi~~~~~~~t 461 (486)
+|+++++. +|..+++||++.+... +. ...+..+.++.+.|.++|.++++++.+.+. .++|++++++.+|
T Consensus 405 ~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t 484 (504)
T 2okj_A 405 REEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAAT 484 (504)
T ss_dssp CTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCC
T ss_pred CCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCC
Confidence 99999987 5888999999865310 00 011224567888999999888887777665 6999999779999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041829 462 WRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 462 ~~di~~~~~~l~~~~~~l 479 (486)
++||++++++|+++++++
T Consensus 485 ~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 485 QSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999887654
No 6
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=100.00 E-value=2.3e-63 Score=516.85 Aligned_cols=465 Identities=24% Similarity=0.368 Sum_probs=392.3
Q ss_pred CCHHHHHHHHHHHHHHHHH-HHHhcCC--CCCCCCCChhhhhhcCCCCCCCCCCCHHHHHhhHHHHHHhhcCCCCcCCCC
Q 041829 1 MDAEQLRENAHKMVDFIAD-YYKSIEN--FPVLSQVQPGYLHNLIPDSAPHHPESLQNVLDGYIDIQEKILPGVTHWQSP 77 (486)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~~~~~--~p~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p 77 (486)
||.+++|++++++++.+.+ |++++.+ +||.+..+|++++..++..+|++|.+++++++ ++.+.+.++. ++.||
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~-~~~~p 109 (515)
T 2jis_A 34 GDPVAVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELKQLLDLELRSQGESQKQILE---RCRAVIRYSV-KTGHP 109 (515)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTGGGCTTSCSCCCCCHHHHHHHHCCCCCSSCCCHHHHHH---HHHHHHHHSC-CTTST
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCHHHHHhhcccCCCCCCCCHHHHHH---HHHHHhcCCC-CCCCC
Confidence 7899999999999999999 9998775 49999999999999999999999999999999 8888777665 45599
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHH
Q 041829 78 NYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVL 157 (486)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al 157 (486)
+|++|+++++.+.+.+++++++++|++...|..+|..+++|.++++|+++++|++.. ++++|+|||+||++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~-------~~~~t~ggtea~~~al 182 (515)
T 2jis_A 110 RFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSG-------DGIFCPGGSISNMYAV 182 (515)
T ss_dssp TEESSSCCCCCHHHHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSC-------EEEEESSHHHHHHHHH
T ss_pred CeEEEeeCCCCHHHHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHhCCCCC-------CeEEcCCcHHHHHHHH
Confidence 999999999999999999999988999889999999999999999999999999853 6999999999999999
Q ss_pred HHHHHHHHH---HhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCcc
Q 041829 158 LAARDKALK---RVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIP 234 (486)
Q Consensus 158 ~~a~~~~~~---~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p 234 (486)
.++|.+..+ ..+..+.++.+|+++..+|+|+.++++.+|+|.++++.||+++ +++||+++|+++|+++.++|.+|
T Consensus 183 ~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~ 260 (515)
T 2jis_A 183 NLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADE--RGKMVPEDLERQIGMAEAEGAVP 260 (515)
T ss_dssp HHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecCC--CCcCCHHHHHHHHHHHHhCCCCc
Confidence 999875421 1111112355899999999999999999999877899999975 46999999999999888788889
Q ss_pred EEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEE
Q 041829 235 FFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWV 314 (486)
Q Consensus 235 ~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~ 314 (486)
++|++++|+|++|.++|+++|+++|+++|+|+|||+||+++.+.++.++..+.+++++|++++++|||+++|++||++++
T Consensus 261 ~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~ 340 (515)
T 2jis_A 261 FLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLL 340 (515)
T ss_dssp EEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEE
T ss_pred EEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEE
Confidence 99999999999999999999999999999999999999999988888777778888999999999999999999999999
Q ss_pred eCc-hHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcC
Q 041829 315 KDR-NTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQD 393 (486)
Q Consensus 315 r~~-~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~ 393 (486)
+++ ..+.+.+...++|+..........+++..++++++|+++++++|++++.+|.+|+++++++..++++++.+.|+++
T Consensus 341 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~ 420 (515)
T 2jis_A 341 QDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR 420 (515)
T ss_dssp SCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred eChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 998 5566667767888865432222234566778899999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCceEEEEEecCCCC----Cccc----chHHHHHHHHHHHccCcEEEEeeeECC-EeEEEEEecCCCCCHHH
Q 041829 394 LRFEVVTPRIFSLVCFRLLPPHN----DEDH----GNKLNHKLLDDINSTGKIFISHTVLSG-KYILRFAVGAPLTEWRH 464 (486)
Q Consensus 394 ~~~~~~~~~~~~~v~f~~~~~~~----~~~~----~~~~~~~l~~~l~~~g~~~~~~~~~~~-~~~lRi~~~~~~~t~~d 464 (486)
|+++++.+|..++++|++.|... +..+ .++.+.++.+.+.++|.++++.+.+.+ ..++|++++++.+|++|
T Consensus 421 ~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~ed 500 (515)
T 2jis_A 421 EGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCAD 500 (515)
T ss_dssp TTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHH
T ss_pred CCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHH
Confidence 99999988888899999865310 0011 122334577888889988877666655 46999999889999999
Q ss_pred HHHHHHHHHHHHHH
Q 041829 465 VNAAWEVMQDKASA 478 (486)
Q Consensus 465 i~~~~~~l~~~~~~ 478 (486)
|++++++|++++++
T Consensus 501 id~~~~~l~~~~~~ 514 (515)
T 2jis_A 501 MDFLLNELERLGQD 514 (515)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887653
No 7
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=100.00 E-value=3.3e-61 Score=498.85 Aligned_cols=458 Identities=23% Similarity=0.384 Sum_probs=385.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhhcCCC-CCCCCCCCHHHHHhhHHHHHHhhcCCCCcCCCCcc
Q 041829 1 MDAEQLRENAHKMVDFIADYYKSIENFPVLSQVQPGYLHNLIPD-SAPHHPESLQNVLDGYIDIQEKILPGVTHWQSPNY 79 (486)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~ 79 (486)
|+.++||+.++++++.+.+|+++++ +| .+..+|++++..++. .+|++|.+++++++ ++.+.+.++.++++||+|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~y 103 (497)
T 2qma_A 29 LGSAEFASVMSHTTSAMKSVFEQVN-AP-YSGMDPKALEDAINAVDLDNKNAPLKSVID---DVAELVAKNAIFTQHPDC 103 (497)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHCC-SS-SCCCCHHHHHHHHHTCCSSSCCCCHHHHHH---HHHHHTTTTSCCTTSTTB
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcc-CC-CCCCCHHHHHHhccccCCCCCCCCHHHHHH---HHHHHHhcCCCCCCCCCe
Confidence 5788999999999999999999984 45 778889999998887 47999999999999 999989999999999999
Q ss_pred cccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHH
Q 041829 80 FAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLA 159 (486)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~ 159 (486)
++|+++++.+++++++++...+|.+...|..+|..+++|+++++|+++++|++.. ..+++|+|||+||+.++.+
T Consensus 104 l~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~------~~~~~t~ggt~a~~~al~~ 177 (497)
T 2qma_A 104 IAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEK------ADGIFTSGGTQSNQMGLML 177 (497)
T ss_dssp CSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTT------CEEEEESSHHHHHHHHHHH
T ss_pred eEeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCC------CCeEEcCCchHHHHHHHHH
Confidence 9999999999999999999989988888999999999999999999999999752 2699999999999999999
Q ss_pred HHHHHHHHh-----CccCC----CCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhC
Q 041829 160 ARDKALKRV-----GKNSL----EKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTI 230 (486)
Q Consensus 160 a~~~~~~~~-----~~~~~----~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~ 230 (486)
+|++...+. ...|. ++.+|+++..+|+|+.++++.+|+|.++++.||++. +|+||+++|+++|+++.++
T Consensus 178 ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~ 255 (497)
T 2qma_A 178 ARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANA--DGTMDITKLDEVIAQAKAE 255 (497)
T ss_dssp HHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSSBCGGGHHHHHHHHHHT
T ss_pred HHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCC--CCcCCHHHHHHHHHHHHHC
Confidence 887544210 01121 234899999999999999999999766899999975 4799999999999988777
Q ss_pred CCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcce
Q 041829 231 GLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCS 310 (486)
Q Consensus 231 g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g 310 (486)
|.+|++|+++.|+|++|.++|+++|+++|++||+|+|||+||+++...++ ++..+.+++++|++++++|||+++|++||
T Consensus 256 ~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~G 334 (497)
T 2qma_A 256 GLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTISCG 334 (497)
T ss_dssp TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCCSSCE
T ss_pred CCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCCcceE
Confidence 77788999999999999999999999999999999999999999887776 66667778889999999999999999999
Q ss_pred EEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHH
Q 041829 311 ALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLV 390 (486)
Q Consensus 311 ~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l 390 (486)
+++++++..+ +.+...+.|+..... ...++..++++++|++.++++|++++.+|.+++++++++..+++++|.+.|
T Consensus 335 ~l~~~~~~~~-~~~~~~~~yl~~~~~---~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L 410 (497)
T 2qma_A 335 ALLVNDKSNF-KFLLHHADYLNREHD---ELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMI 410 (497)
T ss_dssp EEEESCGGGG-GGGCC-----------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCHHHH-HHhcCCchhcCCccc---cCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987644 345555677754321 123456678889999999999999999999999999999999999999999
Q ss_pred hcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHH
Q 041829 391 AQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWE 470 (486)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~ 470 (486)
+++|+++++.++..++++|++.+... ..+.++.++.+.+.++|.++++++.+.+..++|++++++.+|++||+++++
T Consensus 411 ~~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~ 487 (497)
T 2qma_A 411 RTNDQFELLAEPSLSTVLFRATHETA---DLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLS 487 (497)
T ss_dssp HTCTTEEECSCCSSSEEEEEECCSSS---CHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHH
T ss_pred hhCCCeEEEcCCCceEEEEEEcCCcc---CHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHH
Confidence 99999999888889999999875321 134566788888999998888877888888999998889999999999999
Q ss_pred HHHHHHHHH
Q 041829 471 VMQDKASAL 479 (486)
Q Consensus 471 ~l~~~~~~l 479 (486)
.|+++++++
T Consensus 488 ~l~~~~~~~ 496 (497)
T 2qma_A 488 KINMLAVEL 496 (497)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999987653
No 8
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=100.00 E-value=1.4e-48 Score=399.66 Aligned_cols=412 Identities=16% Similarity=0.166 Sum_probs=318.1
Q ss_pred hhhhhhcCCCCCCCCCCCHHHHHhhHHHHHHhh-cCCCCcCCCCcccccCCCCCCHHHHHHHHHHHhcCcCccccccChh
Q 041829 35 PGYLHNLIPDSAPHHPESLQNVLDGYIDIQEKI-LPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPA 113 (486)
Q Consensus 35 ~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~ 113 (486)
+..++..++.++|++|.+++++++ ++.+.+ .++..+++||+|++. .+ ...+.+++..+++.+...|..+|.
T Consensus 7 ~~~~~~~~~~~lp~~g~~~~~v~~---~~~~~~~~~~~~~~~~~~f~~~---~~--~~~v~e~~~~a~~~~~~~~~~~~~ 78 (452)
T 2dgk_A 7 KSISTIAESKRFPLHEMRDDVAFQ---IINDELYLDGNARQNLATFCQT---WD--DENVHKLMDLSINKNWIDKEEYPQ 78 (452)
T ss_dssp --------CCSCCCSCCCHHHHHH---HHHHHGGGSCCCTTBCSCCSCC---CC--CHHHHHHHHHTTTCBTTCTTTCHH
T ss_pred hHHhhhccCCCCCCCCCCHHHHHH---HHHHHhcCCCCCccCCCCeeCC---Cc--hHHHHHHHHHHhccCCCChhhChh
Confidence 444556677889999999999999 998887 677778889998862 11 245789999889888888889999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCC--CCeEEEecCCCchhHHHH
Q 041829 114 ATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSL--EKLVVYASDQTHSALQKA 191 (486)
Q Consensus 114 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~--~~~~v~~s~~~H~s~~~a 191 (486)
..++|+++.+|+++++|++.+.. +...+++|+|||+||++++.++++.+.++....|. .++.|+++. +|+++.++
T Consensus 79 ~~~l~~~~~~~la~l~g~~~~~~--~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~ 155 (452)
T 2dgk_A 79 SAAIDLRCVNMVADLWHAPAPKN--GQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKF 155 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCTT--SCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccc--cCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHH
Confidence 99999999999999999986410 00138999999999999999887644332111221 135788899 99999999
Q ss_pred HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh------CCE
Q 041829 192 CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN------GMW 265 (486)
Q Consensus 192 ~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~------g~~ 265 (486)
++.+|+ +++.||++++ +|.+|+++|+++|+++ +++|++++|+|+||.++|+++|+++|+++ |+|
T Consensus 156 ~~~~G~---~v~~v~~~~~-~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~ 225 (452)
T 2dgk_A 156 ARYWDV---ELREIPMRPG-QLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDID 225 (452)
T ss_dssp HHHTTC---EEEECCCBTT-BCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHcCc---eEEEEecCCC-CCeECHHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCc
Confidence 999999 9999999862 4799999999999653 57899999999999999999999999996 999
Q ss_pred EEeeccccchhc--cCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccC
Q 041829 266 FHVDAAYAGSAC--ICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVD 343 (486)
Q Consensus 266 lhvD~A~g~~~~--~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~ 343 (486)
+|||+||+++.. ..+..+..+ .+.++|++++++|||+++|.++|+++++++..+.+.+...++|+...
T Consensus 226 l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~--------- 295 (452)
T 2dgk_A 226 MHIDAASGGFLAPFVAPDIVWDF-RLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ--------- 295 (452)
T ss_dssp EEEECTTGGGTHHHHCTTCCCST-TSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCC---------
T ss_pred EEEEcccHHHHHHhhCccchhhc-CCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCC---------
Confidence 999999998754 233322222 25689999999999999999999999998754433444456666421
Q ss_pred CCCCccCCCCCC-CcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecC----CCceEEEEEecCCCCCc
Q 041829 344 YKDWQIPLGRRF-RSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTP----RIFSLVCFRLLPPHNDE 418 (486)
Q Consensus 344 ~~~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~----~~~~~v~f~~~~~~~~~ 418 (486)
...++++++|++ .++++|++++.+|.+++++++++..++++++.+.|+++++++++.+ +..++++|++.+....
T Consensus 296 ~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~- 374 (452)
T 2dgk_A 296 IGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDP- 374 (452)
T ss_dssp EEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCC-
T ss_pred CCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcccc-
Confidence 123456778776 6789999999999999999999999999999999999989999865 6789999998642100
Q ss_pred ccchHHHHHHHHHHHccCcE---EEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 041829 419 DHGNKLNHKLLDDINSTGKI---FISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALLAR 482 (486)
Q Consensus 419 ~~~~~~~~~l~~~l~~~g~~---~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~~~ 482 (486)
..+ ..++.++|.++|.. +..+..+.+..++|+++ +..+|++|+++++++|+++.+++.+.
T Consensus 375 -~~~--~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~-~~~~t~e~id~li~~l~~~~~~~~~~ 437 (452)
T 2dgk_A 375 -GYT--LYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMC-RRGFEMDFAELLLEDYKASLKYLSDH 437 (452)
T ss_dssp -SCC--HHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEEC-CTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred -cCC--HHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEe-cCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 011 15677888888853 33333344567999999 56678999999999999998877653
No 9
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=100.00 E-value=1.6e-45 Score=380.83 Aligned_cols=415 Identities=16% Similarity=0.189 Sum_probs=328.5
Q ss_pred CCCCChhhhhhcCCC-CCCCCCCCHHHHHhhHHHHHHhhcCCCCcCCCCcccccCCCCCCHHHHHHHHHHHhcCcCcccc
Q 041829 30 LSQVQPGYLHNLIPD-SAPHHPESLQNVLDGYIDIQEKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSW 108 (486)
Q Consensus 30 ~~~~~~~~~~~~~~~-~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~ 108 (486)
.|...+.+++..+|. .+|++|.+.+++++ .+.+.+..+ .||++......+..++..+.+++...++.+...|
T Consensus 15 ~~~~~~~~~~~~lp~~~~p~~~~~~~~~~~---~~~~~i~l~----gnp~~~l~s~~t~~~~~~v~~~l~~~~~~~~~~~ 87 (502)
T 3hbx_A 15 HSTFASRYVRTSLPRFKMPENSIPKEAAYQ---IINDELMLD----GNPRLNLASFVTTWMEPECDKLIMSSINKNYVDM 87 (502)
T ss_dssp SCTTTSSGGGSCCCSSSCCSSCCCHHHHHH---HHHHHGGGS----CCGGGBTTCCSCCCCCHHHHHHHHHTTTCBTTCT
T ss_pred cccccchhhhhhccCCCCCCCCCCHHHHHH---HHHHHhccC----CCCCceeccccCCCCCHHHHHHHHHHhccCCCCh
Confidence 445678888888988 89999999999999 888776533 4676432111222334567888888899888888
Q ss_pred ccChhhHHHHHHHHHHHHHHcCCC--CCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccC--CCCeEEEecCCC
Q 041829 109 ITSPAATELEMIVLDWLAKLLKLP--EDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNS--LEKLVVYASDQT 184 (486)
Q Consensus 109 ~~~~~~~~le~~~~~~la~l~g~~--~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~--~~~~~v~~s~~~ 184 (486)
..+|...++|+++++|+++++|++ .+. ...|++|+|||+||+.++.+++..+.++....| ..++.|+++..+
T Consensus 88 ~~~p~~~~le~~~~~~la~l~g~~~~~~~----~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~ 163 (502)
T 3hbx_A 88 DEYPVTTELQNRCVNMIAHLFNAPLEEAE----TAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANV 163 (502)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCCSSC----CCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTC
T ss_pred hcChhHHHHHHHHHHHHHHHhCCCccccc----CCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCc
Confidence 899999999999999999999998 321 124678999999999999988776544322122 134489999999
Q ss_pred chhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh--
Q 041829 185 HSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN-- 262 (486)
Q Consensus 185 H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~-- 262 (486)
|+++.++++.+|+ +++.||++++ +|.+|+++|+++|+++ |.+|+++.++|++|.++|+++|+++|+++
T Consensus 164 h~s~~~~~~~~G~---~~~~v~~~~~-~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~ 233 (502)
T 3hbx_A 164 QVCWEKFARYFEV---ELKEVKLSEG-YYVMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNK 233 (502)
T ss_dssp CHHHHHHHHHTTC---EEEEECCBTT-BCSCCHHHHHHHCCTT------EEEEEEEBSCTTTCCBCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCc---eeEEEecCCC-cCcCCHHHHHHHHhhC------CEEEEEecCCCCCCcccCHHHHHHHHHHhhh
Confidence 9999999999999 9999999764 4799999999998764 57899999999999999999999999999
Q ss_pred ----CCEEEeeccccchhc--cCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCccccccccc
Q 041829 263 ----GMWFHVDAAYAGSAC--ICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKAS 336 (486)
Q Consensus 263 ----g~~lhvD~A~g~~~~--~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~ 336 (486)
|+|+|||+||+++.. ..+..+..+. +.++|++++++|||+++|.++|+++++++..+...+...+.|+....
T Consensus 234 ~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~-~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~- 311 (502)
T 3hbx_A 234 ETGWDTPIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQ- 311 (502)
T ss_dssp HHCCCCCEEEECTTGGGTHHHHCTTCCCSTT-STTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCE-
T ss_pred ccCCCCeEEEECCccchhhhhhCcccccccC-CCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCC-
Confidence 999999999997653 3444443332 56899999999999999999999999988765555556667775432
Q ss_pred ccCCccCCCCCccCCCCCC-CcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCceEEEEEecCC
Q 041829 337 QANMVVDYKDWQIPLGRRF-RSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTP-RIFSLVCFRLLPP 414 (486)
Q Consensus 337 ~~~~~~~~~~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~-~~~~~v~f~~~~~ 414 (486)
..+++.++|+. .++++|++++.+|.+++++++++..+++++|++.|+++++|+++.+ +..++++|++.+.
T Consensus 312 --------~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~ 383 (502)
T 3hbx_A 312 --------PTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDS 383 (502)
T ss_dssp --------EECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSC
T ss_pred --------CCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCC
Confidence 12355677765 6789999999999999999999999999999999999988999876 7899999999642
Q ss_pred CCCcccchHHHHHHHHHHHccCcEEEE---eeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 041829 415 HNDEDHGNKLNHKLLDDINSTGKIFIS---HTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALLAR 482 (486)
Q Consensus 415 ~~~~~~~~~~~~~l~~~l~~~g~~~~~---~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~~~ 482 (486)
.. .+ ..++.+.|.++|.++.. +....+..++|+++ +..+|++|++++++.|+++.+++.+.
T Consensus 384 ~~----~~--~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv-~~~~t~edid~li~~L~~~l~~l~~~ 447 (502)
T 3hbx_A 384 SC----HT--EFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVI-REDFSRTLAERLVIDIEKVMRELDEL 447 (502)
T ss_dssp SS----CC--HHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEEC-CTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred Cc----CC--HHHHHHHHHhCCcEEeeccCCcccCCceEEEEEe-CCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 10 11 14688888888865322 22234567999999 78899999999999999998877643
No 10
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-40 Score=345.42 Aligned_cols=392 Identities=16% Similarity=0.213 Sum_probs=304.6
Q ss_pred CCCCCCCCCCCHHHHHhhHHHHHHhhcC-CCCcCCCCcccccCCCC-CCHHHHHHHHHHHhcCcCccccccChhhHHHHH
Q 041829 42 IPDSAPHHPESLQNVLDGYIDIQEKILP-GVTHWQSPNYFAYYPSN-SSVAGFLGEMLSAGLNIVGFSWITSPAATELEM 119 (486)
Q Consensus 42 ~~~~~p~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~-~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~ 119 (486)
....+|++|.+.+++++ ++.+.... +...|.+|+|+|+++.+ +.....+.+.+..+.+.+...|..+|+..++|+
T Consensus 34 ~~~~lp~~g~~~~~i~~---~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 110 (497)
T 3mc6_A 34 NFPQLPSNGIPQDDVIE---ELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMES 110 (497)
T ss_dssp CCSSCCSSCCCHHHHHH---HHHHHHHSSCCCCGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHH---HHHHHhhhcCCCCCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHH
Confidence 34679999999999999 88877653 55788899999987544 445566667777666667778889999999999
Q ss_pred HHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHhCCCC
Q 041829 120 IVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIGGIHP 199 (486)
Q Consensus 120 ~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~ 199 (486)
++.+|+++++|++.. ...+++++|||+|+..++.++++...++ .|.+++.|+++..+|+++.++++.+|+
T Consensus 111 ~~~~~la~~~g~~~~-----~~~~~~~~ggt~a~~~a~~a~~~~~~~~---~g~~~~~Vi~~~~~h~~~~~~~~~~G~-- 180 (497)
T 3mc6_A 111 EVVSMVLRMFNAPSD-----TGCGTTTSGGTESLLLACLSAKMYALHH---RGITEPEIIAPVTAHAGFDKAAYYFGM-- 180 (497)
T ss_dssp HHHHHHHHHTTCCTT-----TCCEEEESSHHHHHHHHHHHHHHHHHHH---SCCSSCEEEEETTSCHHHHHHHHHSCC--
T ss_pred HHHHHHHHHhCCCCC-----CCeEEEcCcHHHHHHHHHHHHHHHHHhc---CCCCCceEEEeCCccHHHHHHHHHcCC--
Confidence 999999999999821 1269999999999999999988754433 223446899999999999999999999
Q ss_pred CCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhcc-
Q 041829 200 QNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACI- 278 (486)
Q Consensus 200 ~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~- 278 (486)
+++.||++++ ++.+|+++|+++|+++ +.+|+++.++|++|.++|+++|+++|++||+|+|||+||+++...
T Consensus 181 -~~~~v~~~~~-~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f 252 (497)
T 3mc6_A 181 -KLRHVELDPT-TYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSF 252 (497)
T ss_dssp -EEEEECBCTT-TCSBCTTTTGGGCCSS------EEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGG
T ss_pred -eEEEEecCcc-cCcCCHHHHHHHHhhC------CEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhh
Confidence 9999999862 4799999999998643 678999999999999999999999999999999999999976542
Q ss_pred --------CccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccC
Q 041829 279 --------CPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIP 350 (486)
Q Consensus 279 --------~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 350 (486)
.+.+.. ...++|++++++||++++|.++|+++++++......+...+.|.... +...++.
T Consensus 253 ~~~~~~~~~~~~~~---~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 320 (497)
T 3mc6_A 253 MEKAGYKNLPLLDF---RVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGL---------YGSPTLA 320 (497)
T ss_dssp GTTTTCCSCCCCST---TSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSC---------BCCSSSC
T ss_pred hhhhcccCCccccc---cCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCC---------cCCcCcc
Confidence 111211 13468999999999999999999999998653322122222332211 1122333
Q ss_pred CCCCCC--cHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCCceEEEEEecCCCCCcccchHHHHH
Q 041829 351 LGRRFR--SLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQ-DLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHK 427 (486)
Q Consensus 351 ~sr~~~--~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~-~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~ 427 (486)
+ ++.. .+++|++++.++.+++++++++..++++++++.|++ +|+++++.++..++++|+.... + ..+
T Consensus 321 g-~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~~-------~--~~~ 390 (497)
T 3mc6_A 321 G-SRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTL-------N--IHE 390 (497)
T ss_dssp S-SCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTTT-------T--HHH
T ss_pred c-CCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCCC-------C--HHH
Confidence 3 3333 457999999999999999999999999999999999 7999998888889999985421 1 256
Q ss_pred HHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041829 428 LLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALLA 481 (486)
Q Consensus 428 l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~~ 481 (486)
+.+.|.++|.. +... .....+|+++ + .+|++|+++++++|+++.+++.+
T Consensus 391 l~~~L~~~Gi~-v~~~--~~~~~~ri~~-~-~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 391 LSDRLSKKGWH-FNAL--QKPVALHMAF-T-RLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp HHHHHHTTTCB-CEEC--CSSCCEEEEC-C-TTTTCTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCEE-EecC--CCCCeEEEEE-e-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 78888888843 3322 2223689999 4 67999999999999999887653
No 11
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=100.00 E-value=3.9e-39 Score=334.86 Aligned_cols=395 Identities=17% Similarity=0.168 Sum_probs=307.8
Q ss_pred CCCCCCCCCHHHHHhhHHHHHHhhcCCCCcCCCCcccccCCC-CCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHH
Q 041829 44 DSAPHHPESLQNVLDGYIDIQEKILPGVTHWQSPNYFAYYPS-NSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVL 122 (486)
Q Consensus 44 ~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~ 122 (486)
..+|++|.+.+++++ ++.+.+.++...|.+++|+|++.. .+..+..+.+.+....+.+...+...|...++|.++.
T Consensus 69 ~~lp~~g~~~~~i~~---~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~ 145 (514)
T 3mad_A 69 ARLPRAGLPRAEILA---EIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVV 145 (514)
T ss_dssp SSCCSSCCCHHHHHH---HHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHH---HHHHHHhccCCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHH
Confidence 568899999999999 888887788888999999998754 4567778888888888888888888999999999999
Q ss_pred HHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCe
Q 041829 123 DWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNF 202 (486)
Q Consensus 123 ~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v 202 (486)
+|+++++|++.+. ....+++|+|||+||..++.+++....++ .|.+++.|+++..+|.++.++++.+|+ ++
T Consensus 146 ~~la~~~g~~~~~---~~v~~~~t~ggt~a~~~al~a~~~~g~~~---~g~~~d~Vi~~~~~~~~~~~~~~~~G~---~v 216 (514)
T 3mad_A 146 AMTAHMLGGDAAG---GTVCGTVTSGGTESLLLAMKTYRDWARAT---KGITAPEAVVPVSAHAAFDKAAQYFGI---KL 216 (514)
T ss_dssp HHHHHHTTGGGGT---SCCEEEEESSHHHHHHHHHHHHHHHHHHH---HCCSSCEEEEETTSCTHHHHHHHHHTC---EE
T ss_pred HHHHHHcCCCCcc---CCcceEEcCcHHHHHHHHHHHHHHHhhhh---cCCCCCeEEEeCccchHHHHHHHHcCC---ee
Confidence 9999999998310 00135999999999999999988754322 123457899999999999999999999 99
Q ss_pred EEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhcc----
Q 041829 203 RVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACI---- 278 (486)
Q Consensus 203 ~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~---- 278 (486)
+.||++. +|++|+++|+++|+++ +.+|+++.++|++|.++|+++|+++|++||+|+|+|+||+++...
T Consensus 217 ~~v~~~~--~~~~d~~~Le~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~ 288 (514)
T 3mad_A 217 VRTPLDA--DYRADVAAMREAITPN------TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAER 288 (514)
T ss_dssp EEECBCT--TSCBCHHHHHHHCCTT------EEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHH
T ss_pred EEeeeCC--CCCCCHHHHHHHhccC------CEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHh
Confidence 9999986 4699999999998653 568999999999999999999999999999999999999986542
Q ss_pred ----CccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCC
Q 041829 279 ----CPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRR 354 (486)
Q Consensus 279 ----~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~ 354 (486)
.+.+.. ...++|++++++||++++|.++|+++++++......+.....|.... +...++.+++.
T Consensus 289 ~g~~~~~~~~---~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~gs~~ 356 (514)
T 3mad_A 289 LGYPVPPFDF---RLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGL---------YFSPTFAGSRP 356 (514)
T ss_dssp TTCCCCCCST---TSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCS---------EEESSSCSSCC
T ss_pred cCCCCCcccc---cCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCc---------ccCCccCCCCc
Confidence 111211 23468999999999999999999999998754322111111221110 11123344444
Q ss_pred CC-cHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHH
Q 041829 355 FR-SLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDIN 433 (486)
Q Consensus 355 ~~-~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~ 433 (486)
.. .+++|++++.++.+++++++++..++++++.+.|+++++++++.++ .+++.|.... .+ ..++.+.|.
T Consensus 357 ~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~-------~~--~~~l~~~L~ 426 (514)
T 3mad_A 357 GALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP-LWVIAVASDE-------LN--IYQVMEEMA 426 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC-SSEEEEECSS-------SC--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC-eEEEEEeCCC-------CC--HHHHHHHHH
Confidence 33 4689999999999999999999999999999999999999988665 4466665432 11 256788888
Q ss_pred ccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 041829 434 STGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALLARL 483 (486)
Q Consensus 434 ~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~~~~ 483 (486)
++|..+ .+. ....++|+++++..++++++++++++|+++.+++.++.
T Consensus 427 ~~Gi~v-~g~--~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~~ 473 (514)
T 3mad_A 427 GRGWRL-NGL--HRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHP 473 (514)
T ss_dssp TTTCBC-EEE--TTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHCT
T ss_pred hcCCEe-ccC--CCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 888543 332 22347999996678888999999999999998876543
No 12
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=100.00 E-value=7.4e-39 Score=318.81 Aligned_cols=382 Identities=11% Similarity=0.052 Sum_probs=271.1
Q ss_pred CCCCCCCCCHHHHHhhHHHHHHhhcCCCCcCC-----------------CCcccccCCCCCCHHHHHHHHHHHhcCcCcc
Q 041829 44 DSAPHHPESLQNVLDGYIDIQEKILPGVTHWQ-----------------SPNYFAYYPSNSSVAGFLGEMLSAGLNIVGF 106 (486)
Q Consensus 44 ~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------------~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~ 106 (486)
..+|++|.+.++|.. .|.+.-.....+|. .|+||||+++. +..+|++.. +.
T Consensus 21 ~~~p~~g~~~~~i~~---~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~----~~~~d~l~~----~~- 88 (450)
T 3bc8_A 21 GKCPEDGWDESTLEL---FLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI----GRSGDISAV----QP- 88 (450)
T ss_dssp CCCCSSCCCHHHHHH---HHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCB----CC-----------CC-
T ss_pred ccCCccCCCHHHHHH---HHHHHhhCCCCccccccccCcccceEecccccCCccceecch----hHHHHHHHh----Cc-
Confidence 469999999999998 77665444444443 27899999876 555677766 33
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchh-HHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCc
Q 041829 107 SWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTAS-EAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTH 185 (486)
Q Consensus 107 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt-~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 185 (486)
.+..+|+...+|+++..|+.+++|+|..+ .+++++|+| .++.++|.++|.... +++.|++++.+|
T Consensus 89 ~~~~~~~~~~~e~~~~~~~~~~lGlp~~~------~~~lV~GaT~~~~a~~L~aar~~~~--------~~~~viv~r~aH 154 (450)
T 3bc8_A 89 KAAGSSLLNKITNSLVLNVIKLAGVHSVA------SCFVVPMATGMSLTLCFLTLRHKRP--------KAKYIIWPRIDQ 154 (450)
T ss_dssp SBHHHHHHHHHHHHHHHHHHHHHTCTTCC------EEEEESSCHHHHHHHHHHHHHHHCT--------TCCEEEEECCCC
T ss_pred cccCCcHHHHHHHHHHHHHHHhCCCCCCc------eEEEECCHHHHHHHHHHHHcchhhc--------CCCEEEEECCcH
Confidence 77889999999999999999999999763 468999888 777777777776311 245677788899
Q ss_pred hhHHHHHHHhCCCCCCeEEEeCCC-CCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCC
Q 041829 186 SALQKACQIGGIHPQNFRVLKTDS-STNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGM 264 (486)
Q Consensus 186 ~s~~~a~~~~g~g~~~v~~v~~~~-~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~ 264 (486)
.|+.+++.++|+ ..+.|+... ++.+.||+++|+++|+++.. ..+.+|+++.+++.+|.+|||++|+++|++||+
T Consensus 155 kSv~kAl~l~Gl---~p~~v~~~~~~~~~~id~~~le~aI~~~~~--~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi 229 (450)
T 3bc8_A 155 KSCFKSMVTAGF---EPVVIENVLEGDELRTDLKAVEAKIQELGP--EHILCLHSTTACFAPRVPDRLEELAVICANYDI 229 (450)
T ss_dssp HHHHHHHHHTTC---EEEEECCEEETTEEECCHHHHHHHHHHHCG--GGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC---eeEEEEeeecCccCCcCHHHHHHHHHhcCC--CCEEEEEEECCcCCCceecCHHHHHHHHHHCCC
Confidence 999999999999 666665421 12579999999999988642 136777777777777899999999999999999
Q ss_pred EEEeeccccchhccCccchhcccCC--cCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCcc
Q 041829 265 WFHVDAAYAGSACICPEYRQYIDGV--EEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVV 342 (486)
Q Consensus 265 ~lhvD~A~g~~~~~~~~~~~~~~~~--~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~ 342 (486)
|+|||+|||+...+.+.... .++ ++||++++|+|||+++|.+++++++|+++.+.+.. ..|....
T Consensus 230 ~l~VD~A~G~~~~~~~~l~~--~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~---~~~~g~~-------- 296 (450)
T 3bc8_A 230 PHVVNNAYGLQSSKCMHLIQ--QGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDIS---KMYPGRA-------- 296 (450)
T ss_dssp CEEEECTTTTTCHHHHHHHH--HHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHH---HHSCSCB--------
T ss_pred eEEEECCCchhhhhhHhHHH--HHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHH---HHhhcCC--------
Confidence 99999999986554322211 223 58999999999999999999999999887665432 2232110
Q ss_pred CCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCCceE-EEEEecCCCCCc
Q 041829 343 DYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDL---RFEVVTPRIFSL-VCFRLLPPHNDE 418 (486)
Q Consensus 343 ~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~---~~~~~~~~~~~~-v~f~~~~~~~~~ 418 (486)
.+ ..++.+|.+++.+|.+++++.+++..++++++++.|++++ +++++..+..++ .++.+..-...
T Consensus 297 --------s~--SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~- 365 (450)
T 3bc8_A 297 --------SA--SPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGH- 365 (450)
T ss_dssp --------CS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSS-
T ss_pred --------cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeeccccccc-
Confidence 00 1248999999999999999999999999999999999988 888876553322 22322211000
Q ss_pred ccchHHHHHHHHHHHc---cCcEEEEe--------ee---------ECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 419 DHGNKLNHKLLDDINS---TGKIFISH--------TV---------LSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 419 ~~~~~~~~~l~~~l~~---~g~~~~~~--------~~---------~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
.+.+..++.-.+.. +|.-.+.+ .. .....++=+.+ +...+++|+++++++|+++.++
T Consensus 366 --~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~-sig~~~~di~~l~~~L~~~~~~ 442 (450)
T 3bc8_A 366 --HDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAA-AIGMKMQDVDLFIKRLDKCLNI 442 (450)
T ss_dssp --SSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEEC-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred --ccCCCceeEEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEe-cCCCCHHHHHHHHHHHHHHHHH
Confidence 01122344444433 33222210 00 11224555555 7889999999999999999887
Q ss_pred HHHhh
Q 041829 479 LLARL 483 (486)
Q Consensus 479 l~~~~ 483 (486)
+.++.
T Consensus 443 ~~~~~ 447 (450)
T 3bc8_A 443 VRKEQ 447 (450)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 76654
No 13
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=100.00 E-value=4.2e-37 Score=314.47 Aligned_cols=392 Identities=11% Similarity=0.054 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhhcCCCCCCCCCCCHHHHHhhHHHHHHhhcCCCCcCCCCcccccC
Q 041829 4 EQLRENAHKMVDFIADYYKSIENFPVLSQVQPGYLHNLIPDSAPHHPESLQNVLDGYIDIQEKILPGVTHWQSPNYFAYY 83 (486)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~ 83 (486)
+.+.+++++++....++++++-. ...+|++|.+.+++.+ .+.+....+. ..|+.+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~lp~~g~~~~~i~~---~~~~~~~~~~-----~~yld~a 87 (456)
T 2z67_A 32 KNMEKRGELVLNEYLKEIEDVFN----------------HRKIPENGIDDEKIKL---FLKFLSMMDT-----DKDPKSV 87 (456)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHH----------------HCSCCSSCCCHHHHHH---HHHHHHTTBG-----GGCTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc----------------cCCCCCCCCCHHHHHH---HHHHHHhccc-----ccccccc
Confidence 45666777776666666555321 1357888889888888 6655433221 1344443
Q ss_pred CCCCCHHHHHHHHHH----HhcC----------cCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCch
Q 041829 84 PSNSSVAGFLGEMLS----AGLN----------IVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTA 149 (486)
Q Consensus 84 ~~~~~~~~~~~~~l~----~~~n----------~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~gg 149 (486)
.+++.+..++..+.. .+++ .+. .|..+|...++++++.+|+++++|++.+ +++|+||
T Consensus 88 a~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~g~~~~--------~~~t~g~ 158 (456)
T 2z67_A 88 RIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQP-KASGASIMYALTNKILESFFKQLGLNVH--------AIATPIS 158 (456)
T ss_dssp ECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCT-TBHHHHHHHHHHHHHHHHHHHHTTCCCE--------EEEESSC
T ss_pred ccccccccccccccCccccccCCCccHHHHHHhhCc-ccccCcHHHHHHHHHHHHHHHHcCCCCC--------EEEeCcH
Confidence 333222222221111 0111 112 4456677899999999999999999762 8999999
Q ss_pred h-HHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCC-CCCCccCHHHHHHHHHHH
Q 041829 150 S-EAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDS-STNYSLSPDSLAEAISRD 227 (486)
Q Consensus 150 t-~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~-~~~~~id~~~L~~~i~~~ 227 (486)
| .+|+.++.+++... ++..|+++..+|+++.++++..|+ +++.+|+.+ +++|.+|+++|+++|++.
T Consensus 159 te~a~~~al~~~~~~~---------~~~~vi~~~~~h~s~~~~~~~~G~---~~~~v~~~~~~~~~~~d~~~l~~~i~~~ 226 (456)
T 2z67_A 159 TGMSISLCLSAARKKY---------GSNVVIYPYASHKSPIKAVSFVGM---NMRLVETVLDGDRVYVPVEDIENAIKKE 226 (456)
T ss_dssp HHHHHHHHHHHHHHHH---------CCCEEEEECCCCHHHHHHHHHTTC---EEEEECCEEETTEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---------CCCEEEEECCCcHHHHHHHHHcCC---CceEEEEeccCCCCCcCHHHHHHHHHHH
Confidence 9 57777877765532 345677677799999999999999 998888732 235799999999999433
Q ss_pred HhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhc-cCccchhcccCCcCCCceeeecccccCCC
Q 041829 228 LTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSAC-ICPEYRQYIDGVEEADSFNMNAHKWFLTN 306 (486)
Q Consensus 228 ~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~-~~~~~~~~~~~~~~aDs~~~~~hK~l~~p 306 (486)
..++ ++++|+++.++|++|.++|+++|+++|+++|+|+|||+||++... ..+.....+.+ ++|++++++|||+++|
T Consensus 227 ~~~~-~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~--~~D~~~~s~hK~~~~p 303 (456)
T 2z67_A 227 IELG-NRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY--RVDAVVSSSDKNLLTP 303 (456)
T ss_dssp HHTT-CCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTS--CCSEEEEEHHHHHCCC
T ss_pred hhCC-CeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCC--CCCEEEEcCCCCcCCC
Confidence 2222 467888899999999999999999999999999999999986654 22322222222 6999999999999999
Q ss_pred CcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHH
Q 041829 307 FDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHF 386 (486)
Q Consensus 307 ~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l 386 (486)
.++|+++++++..+... .+.|.... . ...++++|+++..+|.++++++.++..++++++
T Consensus 304 ~g~G~l~~~~~~~~~~l---~~~~~g~~----------------~--~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l 362 (456)
T 2z67_A 304 IGGGLVYSTDAEFIKEI---SLSYPGRA----------------S--ATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLL 362 (456)
T ss_dssp SSCEEEEESCHHHHHHH---HTTSCSCB----------------C--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCHHHHhhc---CcCCCCCC----------------C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999876544432 22232110 0 012678999999999999999999999999999
Q ss_pred HHHHhcCC---CeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCc--EEEE-------ee--eECCEeEEE
Q 041829 387 EGLVAQDL---RFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGK--IFIS-------HT--VLSGKYILR 452 (486)
Q Consensus 387 ~~~l~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~--~~~~-------~~--~~~~~~~lR 452 (486)
.+.|++++ ++.++. |. ++++|++.... . ..++.++|.++|. +-+. +. ......++|
T Consensus 363 ~~~L~~~~~~~g~~v~~-~~-~~v~~~~~~~~-----~---~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr 432 (456)
T 2z67_A 363 DELLNDLSKKTGGKFLD-VE-SPIASCISVNS-----D---PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIV 432 (456)
T ss_dssp HHHHHHHHHHSSCCBCC-CC-CSSEEEEECSS-----C---HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEE
T ss_pred HHHHHhcccccCCEecC-CC-CeEEEEEeccc-----H---HHHHHHHHHHcCCCcceEEeecCccccccccccCcchhh
Confidence 99999986 776654 44 88888873211 1 2456666777763 1222 00 011236899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHH
Q 041829 453 FAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 453 i~~~~~~~t~~di~~~~~~l~~~ 475 (486)
+++ +..+|++|||+++++|+++
T Consensus 433 ~s~-~~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 433 MNA-AIGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp EEC-CTTCCHHHHHHHHHHHHTC
T ss_pred hhh-hcCCCHHHHHHHHHHHHHH
Confidence 999 8889999999999999865
No 14
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.4e-35 Score=297.24 Aligned_cols=382 Identities=18% Similarity=0.197 Sum_probs=290.2
Q ss_pred CCCCCCCCHHHHHhhHHHHHHhhcCCCCcCCCCcccccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHH
Q 041829 45 SAPHHPESLQNVLDGYIDIQEKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDW 124 (486)
Q Consensus 45 ~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~ 124 (486)
.+|+.|.+.+++++ .+.+.. +....+.+|+|+|+.++++.+ .+.+.+...+..+...+...+...+++.++.+|
T Consensus 4 ~lp~~~~~~~~~~~---~l~~~~-~~~~~~~~~~~~~~~~~~~~~--~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (397)
T 3f9t_A 4 NMQEKGVSEKEILE---ELKKYR-SLDLKYEDGNIFGSMCSNVLP--ITRKIVDIFLETNLGDPGLFKGTKLLEEKAVAL 77 (397)
T ss_dssp SCCSSCCCHHHHHH---HHHHHH-TTSCCGGGTCBCSCSCCCCCT--HHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHH---HHHHhh-ccCCCCCCCCeEEEecCCCcH--HHHHHHHHHHhhcCCCcccChhHHHHHHHHHHH
Confidence 58999999999999 887655 455667889999998665443 345666666665444445567889999999999
Q ss_pred HHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHH--hCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCe
Q 041829 125 LAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKR--VGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNF 202 (486)
Q Consensus 125 la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~--~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v 202 (486)
+++++|.+.+ .+++|+|||+|+..++.+++...... .+....+++.|+++..+|+++.++++.+|+ ++
T Consensus 78 la~~~~~~~~-------~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~---~~ 147 (397)
T 3f9t_A 78 LGSLLNNKDA-------YGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDL---EY 147 (397)
T ss_dssp HHHHTTCTTC-------EEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTC---EE
T ss_pred HHHHhCCCCC-------CEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCc---ee
Confidence 9999999764 58999999999999998887642211 111112478899999999999999999999 99
Q ss_pred EEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccc
Q 041829 203 RVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEY 282 (486)
Q Consensus 203 ~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~ 282 (486)
+.+|++++ +.+|+++|++++++. .+.+|+++.++|++|.+.|+++|.++|++||+|+|+|++|+++.......
T Consensus 148 ~~v~~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~ 220 (397)
T 3f9t_A 148 IYAPIKED--YTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDD 220 (397)
T ss_dssp EEECBCTT--SSBCHHHHHHHHHHS-----CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCG
T ss_pred EEEeeCCC--CcCCHHHHHHHHhhc-----CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhccc
Confidence 99999864 699999999999872 14578889999999999999999999999999999999998765421110
Q ss_pred h--------hcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCC
Q 041829 283 R--------QYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRR 354 (486)
Q Consensus 283 ~--------~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~ 354 (486)
. ...... ++|++++++||++++|.++|+++++++... +.+....+|+.... .....+++.
T Consensus 221 ~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~~~ 288 (397)
T 3f9t_A 221 KYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYK-RYLDVDAPYLTETR----------QATILGTRV 288 (397)
T ss_dssp GGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGG-GGTCEECTTSSSSE----------ECSSCSSCC
T ss_pred ccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHHH-HhhccCCccccCCC----------ccccccccc
Confidence 0 000012 689999999999999999999999887533 23333344443321 011123332
Q ss_pred -CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHH
Q 041829 355 -FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDIN 433 (486)
Q Consensus 355 -~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~ 433 (486)
...+.+|++++.++..++++++++..++++++.+.|+++ +++++.++..++++|.+.. ..++.+.|.
T Consensus 289 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~ 356 (397)
T 3f9t_A 289 GFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVAIEDED-----------YKEVCKKLR 356 (397)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEEEEECTT-----------HHHHHHHHH
T ss_pred cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEEEEEeCC-----------HHHHHHHHH
Confidence 245688888988888999999999999999999999999 8988778888888887642 256777888
Q ss_pred ccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041829 434 STGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 434 ~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 477 (486)
++|. .+.+... ..++|+++ +..+|++|+++++++|+++.+
T Consensus 357 ~~gi-~v~~~~~--~~~~Ri~~-~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 357 DRGI-YVSVCNC--VKALRIVV-MPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp HTTC-BCEECSS--SSEEEEEC-CTTCCHHHHHHHHHHHHHHC-
T ss_pred hCCe-EEeccCC--CCEEEEEE-cCCCCHHHHHHHHHHHHHhhC
Confidence 8874 3443322 36899999 778899999999999988753
No 15
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=100.00 E-value=1.7e-31 Score=274.23 Aligned_cols=396 Identities=14% Similarity=0.088 Sum_probs=266.3
Q ss_pred hhhhhhcCCCCCCCCCCCHHHHHhhHHHHHHhhcCCCCcCCCCcccccCCCCCCHHHHHHHHHHHhcCcCccccc-cChh
Q 041829 35 PGYLHNLIPDSAPHHPESLQNVLDGYIDIQEKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWI-TSPA 113 (486)
Q Consensus 35 ~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~-~~~~ 113 (486)
|+.++...+..+| +.+..++++ .+.+....+.....+..|+|- ......|.++.++...+.+-+..... .+++
T Consensus 31 p~~~~~~~~~~lp--~~~e~~~~~---~~~~l~~~~~~~~~~~~~lg~-~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g 104 (474)
T 1wyu_B 31 PKEHLREVPPRLP--EVDELTLVR---HYTGLSRRQVGVDTTFYPLGS-CTMKYNPKLHEEAARLFADLHPYQDPRTAQG 104 (474)
T ss_dssp CGGGBCSSCCCCC--CCCHHHHHH---HHHHHHTTCCCTTTSCCCBTT-TCCCCCCHHHHHHHHTTSSCCTTSCGGGCHH
T ss_pred CHHHhccCCCCCC--CCCHHHHHH---HHHHHHhCCCCcccCcccccc-ccccCCHHHHHHHHHHHHhcCCCCchhhChH
Confidence 4555555556788 689999999 887777666554556677773 22233344554544432221122222 5888
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHH
Q 041829 114 ATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQ 193 (486)
Q Consensus 114 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 193 (486)
..++++++.+|+++++|++.. .++++|||+++..++.+++...... +. ..++..|+++..+|.++.++++
T Consensus 105 ~~~l~~~l~~~la~~~g~~~~--------~~~~~ggt~a~~~al~~~~~~~~~~-Gd-~~~r~~Vlv~~~~h~~~~~~~~ 174 (474)
T 1wyu_B 105 ALRLMWELGEYLKALTGMDAI--------TLEPAAGAHGELTGILIIRAYHEDR-GE-GRTRRVVLVPDSAHGSNPATAS 174 (474)
T ss_dssp HHHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHHHHHHHHHHHHHHHHT-TC-TTTCCEEEEETTSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCce--------eecChHHHHHHHHHHHHHHHHHHhc-CC-ccCCCEEEEeCCcChhhHHHHH
Confidence 899999999999999999763 6788999999999988877543221 00 0123478889999999999999
Q ss_pred HhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc-CChHHHHHHHHHhCCEEEeeccc
Q 041829 194 IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV-DPLLALGNIAKSNGMWFHVDAAY 272 (486)
Q Consensus 194 ~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i-d~l~~I~~ia~~~g~~lhvD~A~ 272 (486)
..|+ +++.||+++ +|.+|+++|+++|+++ +.+|+++.+ |++|.+ +|+++|+++|+++|+|+|+|++|
T Consensus 175 ~~G~---~vv~v~~~~--~~~~d~~~L~~~i~~~------t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~ 242 (474)
T 1wyu_B 175 MAGY---QVREIPSGP--EGEVDLEALKRELGPH------VAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGAN 242 (474)
T ss_dssp HTTC---EEEEECBCT--TSSBCHHHHHHHCSTT------EEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGG
T ss_pred HCCC---EEEEecCCC--CCCcCHHHHHHhhCCC------ceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCch
Confidence 9999 999999975 3699999999998654 357788876 579999 89999999999999999999999
Q ss_pred cchhccCccchhcccCCcCCCceeeecccccCCCC-----cceEEEEeCchHHHHHhcCCcccccccc--c--ccCCccC
Q 041829 273 AGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNF-----DCSALWVKDRNTLIQSLSTNPEFLKNKA--S--QANMVVD 343 (486)
Q Consensus 273 g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~-----~~g~l~~r~~~~~~~~~~~~~~yl~~~~--~--~~~~~~~ 343 (486)
+.+... ..+. +..++|++++++||+++.|. ++|+++++++. + +.+.. .++.... . .......
T Consensus 243 ~~~~~g--~~~~---~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l-~-~~l~~--~~~~~~g~~~~~~~~~~~~ 313 (474)
T 1wyu_B 243 LNAIMG--WARP---GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHL-A-PYLPV--PLVERGEEGFYLDFDRPKS 313 (474)
T ss_dssp GGGTTT--TCCH---HHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGG-G-GGCCS--CEEEECSSCEEEECCCTTC
T ss_pred hhhhcc--CCCc---ccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHH-H-HhCCC--CeeeccCCeeEecccCccc
Confidence 765431 1111 11168999999999999996 68999998742 2 22211 1110000 0 0000000
Q ss_pred CCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-CceEEEEEecCCCCCcccch
Q 041829 344 YKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPR-IFSLVCFRLLPPHNDEDHGN 422 (486)
Q Consensus 344 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~ 422 (486)
...+...++......++|..++.+|.++++++.++..++++++.+.|+++ ++++..++ .++.+.+.+ +.+ .
T Consensus 314 ~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~~~-----~- 385 (474)
T 1wyu_B 314 IGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQP-PEG-----F- 385 (474)
T ss_dssp CCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBC-STT-----C-
T ss_pred CcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEc-CCC-----C-
Confidence 00000001111234567777887889999999999999999999999998 88874332 333234444 211 1
Q ss_pred HHHHHHHHHHHccCcEEEEeeeEC--CEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 423 KLNHKLLDDINSTGKIFISHTVLS--GKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 423 ~~~~~l~~~l~~~g~~~~~~~~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
...++.++|.++|.. +....+. ...++|+++ ...+|++|+++++++|+++.++
T Consensus 386 -~~~~l~~~L~~~Gi~-~~~~~~~~~~~~~lRis~-~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 386 -RALDLAKGLLELGFH-PPTVYFPLIVKEALMVEP-TETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp -CHHHHHHHHHHTTCC-CCEESCSTTSTTCEEECC-CTTSCHHHHHHHHHHHHHHHTS
T ss_pred -CHHHHHHHHHHCCcc-ccccccccccCCEEEEEe-ecCCCHHHHHHHHHHHHHHHHh
Confidence 125677788878854 3222221 246899999 7788999999999999987643
No 16
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.97 E-value=2e-29 Score=246.89 Aligned_cols=323 Identities=12% Similarity=0.049 Sum_probs=222.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHH
Q 041829 114 ATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQ 193 (486)
Q Consensus 114 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 193 (486)
...-|..+.+||+.+ |++.. ...++++|+|-+++.+++++.....+ +++.|++++.+|.|+.+++.
T Consensus 115 ~~ltn~l~ld~L~~~-G~~~~------~~~flVnGsTgg~lamilaa~r~~rp-------g~d~VIvpRn~HKSv~kAli 180 (501)
T 3hl2_A 115 NKITNSLVLDIIKLA-GVHTV------ANCFVVPMATGMSLTLCFLTLRHKRP-------KAKYIIWPRIDQKSCFKSMI 180 (501)
T ss_dssp HHHHHHHHHHHHHHT-TCTTC------CEEEEESSCHHHHHHHHHHHHHHHCT-------TCCEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCCCC------CcEEEECcHHHHHHHHHHHHcCcccC-------CCCEEEEecchHHHHHHHHH
Confidence 345577888999988 99975 35788888886666666555442111 23678889999999999999
Q ss_pred HhCCCCCCeEEEeCCC-CCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcc-ccccCChHHHHHHHHHhCCEEEeecc
Q 041829 194 IGGIHPQNFRVLKTDS-STNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTS-STAVDPLLALGNIAKSNGMWFHVDAA 271 (486)
Q Consensus 194 ~~g~g~~~v~~v~~~~-~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~-tG~id~l~~I~~ia~~~g~~lhvD~A 271 (486)
++|+ ++++|+... ++.+.+|+++|+++|++.. ...++++++.++++ .|.++||++|+++|++||+|+|||+|
T Consensus 181 L~Gl---~Pv~V~p~~d~~~~~id~e~le~aI~e~g---a~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeA 254 (501)
T 3hl2_A 181 TAGF---EPVVIENVLEGDELRTDLKAVEAKVQELG---PDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNA 254 (501)
T ss_dssp HTTC---EEEEECEEEETTEEEECHHHHHHHHHHHC---GGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECT
T ss_pred HcCC---eEEEEeeeecccccCCCHHHHHHHHHhcC---CCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCc
Confidence 9999 888887621 1247999999999998862 12344444444444 45779999999999999999999999
Q ss_pred ccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCC
Q 041829 272 YAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPL 351 (486)
Q Consensus 272 ~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 351 (486)
||+...+++......-...+||.++.++||++.+|.+++++++++++.+.+.. ..|.
T Consensus 255 hGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~---~~yP-------------------- 311 (501)
T 3hl2_A 255 YGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEIS---KMYP-------------------- 311 (501)
T ss_dssp TCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHH---HTSC--------------------
T ss_pred chhhhhhhhhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHHH---HhCC--------------------
Confidence 99977554432221111224999999999999999999999999987665431 1221
Q ss_pred CC--CCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCCce-EEEEEecCCCCCcccchHHH
Q 041829 352 GR--RFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDL---RFEVVTPRIFS-LVCFRLLPPHNDEDHGNKLN 425 (486)
Q Consensus 352 sr--~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~---~~~~~~~~~~~-~v~f~~~~~~~~~~~~~~~~ 425 (486)
+| .+.++.+|++++.+|.+||+++++++.+++++|++.|+++. |-+++..+... -+++.+.... .. .+...
T Consensus 312 Gr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~--~~-~~~~~ 388 (501)
T 3hl2_A 312 GRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLD--EH-RDKAV 388 (501)
T ss_dssp SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSC--TT-TSCHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccccc--cc-ccccH
Confidence 12 24567899999999999999999999999999999998853 34565433221 2333433221 10 11112
Q ss_pred HHHHHHHHcc---CcEEEEee--------eEC---------CEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 041829 426 HKLLDDINST---GKIFISHT--------VLS---------GKYILRFAVGAPLTEWRHVNAAWEVMQDKASALLARL 483 (486)
Q Consensus 426 ~~l~~~l~~~---g~~~~~~~--------~~~---------~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~~~~ 483 (486)
..|-..|..+ |--.|.+. .+. ...|+-++. ....+++|||.+++.|.++..++.++.
T Consensus 389 t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~-aiG~~~~~v~~~~~~l~~~~~~~~~~~ 465 (501)
T 3hl2_A 389 TQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAAS-AIGMKMQDVDLFIKRLDRCLKAVRKER 465 (501)
T ss_dssp HHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEEC-CTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 2344444332 32223222 121 125777766 678899999999999999998877554
No 17
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.97 E-value=6.8e-29 Score=252.56 Aligned_cols=377 Identities=15% Similarity=0.118 Sum_probs=242.6
Q ss_pred ChhhhhhcCCCCCCCCCCCHHHHHhhHHHHHHhhcCCCCcCCCCcccccCCCCCCHHHHHHHHH--HHhcCcC-cccccc
Q 041829 34 QPGYLHNLIPDSAPHHPESLQNVLDGYIDIQEKILPGVTHWQSPNYFAYYPSNSSVAGFLGEML--SAGLNIV-GFSWIT 110 (486)
Q Consensus 34 ~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l--~~~~n~~-~~~~~~ 110 (486)
-|+.++.. +.++| +|.++.++++ ++.....++.. ....|+|.-..+...|..+.+++ ...+... ....+.
T Consensus 30 ~p~~~~~~-~~~lp-~~~~~~~~~~---~~~~l~~~~~~--~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~ 102 (438)
T 1wyu_A 30 LPKEILSP-PIDLP-EPLPEWKVLE---ELRRLAAQNLP--AHKAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEV 102 (438)
T ss_dssp SCGGGSSC-CCCCC-CCCCHHHHHH---HHHHHHHTSCC--CTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGG
T ss_pred CcHHHhcC-CCCCC-CCCCHHHHHH---HHHHHHhcCcC--ccccccCCCccCCcCcHHHHHHHhcchhhhcCCCCcchh
Confidence 47777777 78899 7899999999 77665554432 01122222111112233333333 2222211 111235
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHH
Q 041829 111 SPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQK 190 (486)
Q Consensus 111 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 190 (486)
+++..+++.++.+++++++|++.. ++++++|||.++..++.+.+.. +++.|+++...|+++..
T Consensus 103 ~~g~~~~~~~~~~~la~~~g~~~~-------~i~~~~g~taa~ea~~~a~~~~----------~gd~Viv~~~~h~s~~~ 165 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAGLEIA-------NASMYDGATALAEGVLLALRET----------GRMGVLVSQGVHPEYRA 165 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSEE-------CSCBSSHHHHHHHHHHHHHHHH----------TCCEEEEETTSCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcc-------ceEEeCcHHHHHHHHHHHHhcC----------CCCEEEEcCccCHhHHH
Confidence 788889999999999999999764 5789999994433333333222 67789999999999886
Q ss_pred HH----HHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEE
Q 041829 191 AC----QIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWF 266 (486)
Q Consensus 191 a~----~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~l 266 (486)
++ +..|+ +++.+|++ ++.+|+++ |++ ++.+|+++++ |++|.++|+++|+++|+++|+|+
T Consensus 166 ~~~~~a~~~G~---~v~~v~~~---~~~~d~~~----i~~------~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~v 228 (438)
T 1wyu_A 166 VLRAYLEAVGA---KLLTLPLE---GGRTPLPE----VGE------EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALF 228 (438)
T ss_dssp HHHHHHHHTTC---EEEEECCB---TTBCCCCC----CCT------TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHCCC---EEEEEcCc---CCccCHHH----hCC------CeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEE
Confidence 55 45799 99999873 35888776 322 2568889998 99999999999999999999999
Q ss_pred Eeecc-ccchhccCccchhcccCCcCCCceeeeccc-----ccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCC
Q 041829 267 HVDAA-YAGSACICPEYRQYIDGVEEADSFNMNAHK-----WFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANM 340 (486)
Q Consensus 267 hvD~A-~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK-----~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~ 340 (486)
|||.. ++.+.+..+ .. .++|++++++|| |+++| ++|++++++.. . +.+ +.++.....+..+
T Consensus 229 ivd~d~~a~g~~~~~--~~-----~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~-~-~~l---~~~~~g~~~~~~~ 295 (438)
T 1wyu_A 229 VAVADPLSLGVLKPP--GA-----YGADIAVGDGQSLGLPMGFGGP-HFGFLATKKAF-V-RQL---PGRLVSETVDVEG 295 (438)
T ss_dssp EEECCTTGGGTBCCH--HH-----HTCSEEEEECTTTTCCCGGGCS-CCEEEEECGGG-G-GGC---CSCCEEEEEBTTS
T ss_pred EEEechhhccCcCCC--cc-----CCCCEEEECCcccCCCccCCCC-CeeEEEEcHHH-H-HhC---CCceeccccccCC
Confidence 96644 322222222 11 268999999888 67788 89999987642 2 211 2222111000000
Q ss_pred c----cCC--CCC--ccC-CCCCC---Cc-HHH--HHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCc
Q 041829 341 V----VDY--KDW--QIP-LGRRF---RS-LKL--WMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTP-RIF 404 (486)
Q Consensus 341 ~----~~~--~~~--~~~-~sr~~---~~-l~~--~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~-~~~ 404 (486)
. ..+ .+. ..+ .+... .+ .++ +..+..+|.+|++++.++..++++++.+.|+++||+++..+ +.+
T Consensus 296 ~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 375 (438)
T 1wyu_A 296 RRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFF 375 (438)
T ss_dssp CEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBC
T ss_pred CcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeE
Confidence 0 000 000 000 11111 11 233 33377788899999999999999999999999999999865 445
Q ss_pred eEEEEEecCCCCCcccchHHHHHHHHHHHccCcEE-EEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 405 SLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIF-ISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 405 ~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
..++|++.. + ..++.++|.++|... +.+..+.+..++|+++ ++.+|++|+++++++|+++
T Consensus 376 ~~~~~~~~~--------~--~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~-~~~~t~edi~~~~~~l~~~ 436 (438)
T 1wyu_A 376 NEFALALPK--------D--PEAVRRALAERGFHGATPVPREYGENLALFAA-TELHEEEDLLALREALKEV 436 (438)
T ss_dssp SEEEEECSS--------C--HHHHHHHHHHTTCCCCEECCTTSCSSEEEEEC-CTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCC--------C--HHHHHHHHHHCCceeccccccccCCCeEEEEe-cccCCHHHHHHHHHHHHHH
Confidence 566666421 1 256777888787433 1333322356899999 7899999999999999875
No 18
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.97 E-value=4.4e-29 Score=251.55 Aligned_cols=357 Identities=14% Similarity=0.065 Sum_probs=248.6
Q ss_pred CCCCcccccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHH
Q 041829 74 WQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAV 153 (486)
Q Consensus 74 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~ 153 (486)
..+|.++.+.|++..++..+.+.+...+. . ..++....+..++.+++++++|.+... ..++++|||+++
T Consensus 9 ~~~~~~~~~~pgp~~~~~~v~~a~~~~~~---~--~~~~~~~~~~~~~~~~la~~~~~~~~~------~v~~~~sgt~al 77 (411)
T 3nnk_A 9 LNPPSRLLMGPGPINADPRVLRAMSSQLI---G--QYDPAMTHYMNEVMALYRGVFRTENRW------TMLVDGTSRAGI 77 (411)
T ss_dssp CCCCCCEEESSSCCCCCHHHHHHHTSCCC---C--TTCHHHHHHHHHHHHHHHHHHTCCCSE------EEEEESCHHHHH
T ss_pred cCCccceeecCCCCCCCHHHHHHhhcccc---c--cccHHHHHHHHHHHHHHHHHhCCCCCc------EEEECCCcHHHH
Confidence 45777777888877666666666544221 1 235666788889999999999987641 267888999999
Q ss_pred HHHHHHHHHHHHHHhCccCCCCeEEEecCCCchh--HHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCC
Q 041829 154 LVVLLAARDKALKRVGKNSLEKLVVYASDQTHSA--LQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIG 231 (486)
Q Consensus 154 ~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g 231 (486)
..++.+... +++.|+++..+|++ +..+++..|+ +++.+|++.+ +.+|+++|++++++.
T Consensus 78 ~~~~~~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~d~~~l~~~i~~~---- 137 (411)
T 3nnk_A 78 EAILVSAIR-----------PGDKVLVPVFGRFGHLLCEIARRCRA---EVHTIEVPWG--EVFTPDQVEDAVKRI---- 137 (411)
T ss_dssp HHHHHHHCC-----------TTCEEEEEECSHHHHHHHHHHHHTTC---EEEEEECCTT--CCCCHHHHHHHHHHH----
T ss_pred HHHHHHhcC-----------CCCEEEEecCCchHHHHHHHHHHcCC---eEEEEecCCC--CCCCHHHHHHHHhhC----
Confidence 888876632 67788899999988 8889999999 9999999754 589999999999863
Q ss_pred CccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceE
Q 041829 232 LIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSA 311 (486)
Q Consensus 232 ~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~ 311 (486)
++.+|+++.++|++|.+.|+++|+++|++||+|+|+|++++.+....+ ... .++|++++++||++++|.++|+
T Consensus 138 -~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~-~~~-----~~~d~~~~s~~K~l~~~~g~g~ 210 (411)
T 3nnk_A 138 -RPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLE-TDV-----WGLDAVSAGMQKCLGGPSGTSP 210 (411)
T ss_dssp -CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCC-TTT-----TTCSEEECCSTTTTCCCSSEEE
T ss_pred -CCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccc-hhc-----cCCcEEEecCccccCCCCceEE
Confidence 145889999999999999999999999999999999999876543222 111 1689999999999999999999
Q ss_pred EEEeCchHHHHHhcC---Ccccccccccc-----c-CCccCCC-------CCccC-CCCC-CCcHHHHHHHHHhChhhHH
Q 041829 312 LWVKDRNTLIQSLST---NPEFLKNKASQ-----A-NMVVDYK-------DWQIP-LGRR-FRSLKLWMVLRLYGLENLQ 373 (486)
Q Consensus 312 l~~r~~~~~~~~~~~---~~~yl~~~~~~-----~-~~~~~~~-------~~~~~-~sr~-~~~l~~~~~l~~~g~~g~~ 373 (486)
++++++. +...... .+.|....... . ....+.. ..... .+.. .....+..+++.+..+|++
T Consensus 211 ~~~~~~~-~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~ 289 (411)
T 3nnk_A 211 ITLSARM-EEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLD 289 (411)
T ss_dssp EEECHHH-HHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred EEECHHH-HHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 9887642 2222111 12222111000 0 0000000 00001 1111 1223455667766677789
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEecCCC---ceEEEEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEee-eECCE
Q 041829 374 GYIRNHIQLAKHFEGLVAQDLRFEVVTPRI---FSLVCFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHT-VLSGK 448 (486)
Q Consensus 374 ~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~~~~~ 448 (486)
++.++..++++++.+.|+++ ++++..++. .++++|.+.. + .+ ..++.+.|.++ | +.+.+. ...+.
T Consensus 290 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~-----~~--~~~l~~~l~~~~g-i~v~~g~~~~~~ 359 (411)
T 3nnk_A 290 YGIARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIPQ-G-----IN--GDQARKLMLEDFG-IEIGTSFGPLHG 359 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECCT-T-----CC--HHHHHHHHHHHHS-EEEEECCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEECCC-C-----CC--HHHHHHHHHHhcC-eEEeCccCCCCC
Confidence 99999999999999999997 888765432 4577777642 1 11 24577777766 6 444433 22233
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 449 YILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 449 ~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
.++|+++++..++++|+++++++|+++.+++
T Consensus 360 ~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 360 KVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp TEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 5899998556678999999999999988754
No 19
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.97 E-value=4.1e-28 Score=241.58 Aligned_cols=343 Identities=12% Similarity=0.110 Sum_probs=236.8
Q ss_pred ccccCCCCCCHHHHHHHH---HHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHH
Q 041829 79 YFAYYPSNSSVAGFLGEM---LSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLV 155 (486)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~---l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~ 155 (486)
|+++..+.+.++.++..+ +...+.++...+..+....++.+++.+++++++|.+.+ ..++|+|||+++..
T Consensus 3 yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-------~i~~~~g~~~a~~~ 75 (382)
T 4hvk_A 3 YFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG-------TVVFTSGATEANNL 75 (382)
T ss_dssp BCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTE-------EEEEESSHHHHHHH
T ss_pred eecCCCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcC-------eEEEECCchHHHHH
Confidence 455554444444433332 22222222223444556778888999999999998764 58999999999998
Q ss_pred HHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHh---CCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCC
Q 041829 156 VLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIG---GIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGL 232 (486)
Q Consensus 156 al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~---g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~ 232 (486)
++.+......+ +++.|+++..+|+++..++..+ |+ +++.+|++++ +.+|+++|++++++.
T Consensus 76 ~~~~~~~~~~~-------~gd~vi~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~d~~~l~~~i~~~----- 138 (382)
T 4hvk_A 76 AIIGYAMRNAR-------KGKHILVSAVEHMSVINPAKFLQKQGF---EVEYIPVGKY--GEVDVSFIDQKLRDD----- 138 (382)
T ss_dssp HHHHHHHHHGG-------GCCEEEEETTCCHHHHHHHHHHHHTTC---EEEEECBCTT--SCBCHHHHHHHCCTT-----
T ss_pred HHHHhhhhhcC-------CCCEEEECCCCcHHHHHHHHHHHhcCC---EEEEeccCCC--CCcCHHHHHHHhccC-----
Confidence 88876532111 6778999999999998877664 88 9999999854 599999999998643
Q ss_pred ccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEE
Q 041829 233 IPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSAL 312 (486)
Q Consensus 233 ~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l 312 (486)
+.+|+++.++|++|.+.|+++|.++|+++|+ +|+|++|+.+....+ ... .++|++++++||++ +|.|+|++
T Consensus 139 -~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~-~~~-----~~~d~~~~s~~K~~-g~~g~g~~ 209 (382)
T 4hvk_A 139 -TILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVD-VEK-----IGADMLTISSNDIY-GPKGVGAL 209 (382)
T ss_dssp -EEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCC-HHH-----HTCSEEEEESGGGT-SCTTCEEE
T ss_pred -ceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCC-chh-----cCCCEEEEeHHHhc-CCCceEEE
Confidence 4689999999999999999999999999999 999999876544322 111 15899999999975 57789999
Q ss_pred EEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCC-C-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHH
Q 041829 313 WVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGR-R-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLV 390 (486)
Q Consensus 313 ~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr-~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l 390 (486)
++++... .. +++..... ......+. . .....+..+++. ..++++++.++..++++++.+.|
T Consensus 210 ~~~~~~~------~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L 272 (382)
T 4hvk_A 210 WIRKEAK------LQ-PVILGGGQ---------ENGLRSGSENVPSIVGFGKAAEI-TAMEWREEAERLRRLRDRIIDNV 272 (382)
T ss_dssp EEETTCC------CC-CSSCSSCT---------GGGTSCSCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCccC------cC-cccccCCC---------cCccccCCcCHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHH
Confidence 9987531 11 11111000 00001111 1 111233334442 35688899999999999999999
Q ss_pred hcCCCeEEecCCC---ceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeEC-------------C------E
Q 041829 391 AQDLRFEVVTPRI---FSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLS-------------G------K 448 (486)
Q Consensus 391 ~~~~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-------------~------~ 448 (486)
+++|++++..++. .++++|.+.... ..++.+.|.+.|.....+..+. + .
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 343 (382)
T 4hvk_A 273 LKIEESYLNGHPEKRLPNNVNVRFSYIE---------GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAH 343 (382)
T ss_dssp TTSTTEEECSCSSSBCTTEEEEEETTCC---------HHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHH
T ss_pred hcCCCeEEeCCccccCCCEEEEEECCCC---------HHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcC
Confidence 9999999875442 357788775311 2456777777774332221110 0 4
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041829 449 YILRFAVGAPLTEWRHVNAAWEVMQDKASALLA 481 (486)
Q Consensus 449 ~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~~ 481 (486)
.++|+++ +..+|++|+++++++|+++.+++.+
T Consensus 344 ~~iRl~~-~~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 344 GTLLLTL-GRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp TEEEEEC-CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEc-CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 6899999 7888999999999999999988765
No 20
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.97 E-value=3.3e-28 Score=242.98 Aligned_cols=351 Identities=12% Similarity=0.086 Sum_probs=242.4
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCC-CCCcCCCCCCeEEcCchhHHHHHH
Q 041829 78 NYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLP-EDFLSSGQGGGVIQGTASEAVLVV 156 (486)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~~~t~ggt~a~~~a 156 (486)
.|+.+..+ ...+..+.+.+...+.. . .++...++.+++.+++++++|.+ .+ ..++|+|||+|+..+
T Consensus 21 ~~l~~~~~-~~~~~~v~~a~~~~~~~---~--~~~~~~~~~~~~~~~la~~~g~~~~~-------~v~~~~g~t~a~~~~ 87 (386)
T 2dr1_A 21 YKLFTAGP-VACFPEVLEIMKVQMFS---H--RSKEYRKVHMDTVERLREFLEVEKGE-------VLLVPSSGTGIMEAS 87 (386)
T ss_dssp SEECCSSS-CCCCHHHHHHTTSCCCC---T--TSHHHHHHHHHHHHHHHHHHTCSSSE-------EEEESSCHHHHHHHH
T ss_pred ceeecCCC-cCCcHHHHHHHhccccc---c--cCHHHHHHHHHHHHHHHHHhCCCCCc-------EEEEeCChHHHHHHH
Confidence 46555333 33333444544443321 2 24556789999999999999997 22 488999999999988
Q ss_pred HHHHHHHHHHHhCccCCCCeEEEecCCCchh--HHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCcc
Q 041829 157 LLAARDKALKRVGKNSLEKLVVYASDQTHSA--LQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIP 234 (486)
Q Consensus 157 l~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p 234 (486)
+.+... +++.|+++..+|++ +..+++..|+ +++.+|++.+ +.+|+++|++++++. .++
T Consensus 88 ~~~l~~-----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~d~~~l~~~l~~~----~~~ 147 (386)
T 2dr1_A 88 IRNGVS-----------KGGKVLVTIIGAFGKRYKEVVESNGR---KAVVLEYEPG--KAVKPEDLDDALRKN----PDV 147 (386)
T ss_dssp HHHHSC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTT--CCCCHHHHHHHHHHC----TTC
T ss_pred HHHhhc-----------CCCeEEEEcCCchhHHHHHHHHHhCC---ceEEEecCCC--CCCCHHHHHHHHhcC----CCC
Confidence 876532 56788889999998 8888999999 9999999763 689999999999652 125
Q ss_pred EEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEE
Q 041829 235 FFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWV 314 (486)
Q Consensus 235 ~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~ 314 (486)
.+|+++.++|++|.+.|+++|.++|+++|+++|+|++|+.+....+ . ... ++|+++.++||++++|.++|++++
T Consensus 148 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~-~----~~~-~~di~~~s~sK~~~~~~g~G~~~~ 221 (386)
T 2dr1_A 148 EAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIK-F----DKW-GLDVVFSSSQKAFGVPPGLAIGAF 221 (386)
T ss_dssp CEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCC-T----TTT-TCSEEEEETTSTTCCCSSCEEEEE
T ss_pred cEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCcccc-c----ccc-CCcEEEEeccccccCCCceEEEEE
Confidence 6888899999999999999999999999999999999986554221 1 111 579999999999999988999998
Q ss_pred eCchHHHHHhcC--CcccccccccccCCccCCC-CCccCCCCC-CCcHHHHHHHHHhChh-hHHHHHHHHHHHHHHHHHH
Q 041829 315 KDRNTLIQSLST--NPEFLKNKASQANMVVDYK-DWQIPLGRR-FRSLKLWMVLRLYGLE-NLQGYIRNHIQLAKHFEGL 389 (486)
Q Consensus 315 r~~~~~~~~~~~--~~~yl~~~~~~~~~~~~~~-~~~~~~sr~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~ 389 (486)
++. .+. .+.. ..++....... ..... ......+.. .....++.+++.+... +++++.++..++++++.+.
T Consensus 222 ~~~-~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~ 296 (386)
T 2dr1_A 222 SER-FLE-IAEKMPERGWYFDIPLY---VKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREG 296 (386)
T ss_dssp CHH-HHH-HHTTCTTCCSTTCHHHH---HHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHH-HHH-HHhcCCCCceEEeHHHH---HHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 753 232 2211 01111000000 00000 000011111 1233455666665555 6888999999999999999
Q ss_pred HhcCCCeEEecCC---CceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeee-ECCEeEEEEEecCCCCCHHHH
Q 041829 390 VAQDLRFEVVTPR---IFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTV-LSGKYILRFAVGAPLTEWRHV 465 (486)
Q Consensus 390 l~~~~~~~~~~~~---~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~~lRi~~~~~~~t~~di 465 (486)
|+++ ++++..++ ..+++++++.. + .+ ..++.+.|.++| +.+.+.. ..+..++|+++ +..++++|+
T Consensus 297 L~~~-g~~~~~~~~~~~~~~~~~~~~~-~-----~~--~~~~~~~l~~~g-i~v~~~~~~~~~~~iRi~~-~~~~~~~~i 365 (386)
T 2dr1_A 297 VREI-GLDILAEPGHESPTITAVLTPP-G-----IK--GDEVYEAMRKRG-FELAKGYGSVKEKTFRIGH-MGYMKFEDI 365 (386)
T ss_dssp HHHT-TCCBSSCTTCBCSSEEEEECCT-T-----CC--HHHHHHHHHHTT-EECEECCGGGTTTEEEEEC-CSSCCHHHH
T ss_pred HHHc-CCeeCcCccccCCceEEEEcCC-C-----CC--HHHHHHHHHHCC-eEEecCccccCCCEEEEEC-CCCCCHHHH
Confidence 9998 88876542 35677777642 1 11 256778888887 4444432 22345899999 667899999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 041829 466 NAAWEVMQDKASALLARL 483 (486)
Q Consensus 466 ~~~~~~l~~~~~~l~~~~ 483 (486)
++++++|+++.+++..+.
T Consensus 366 ~~~~~~l~~~~~~~~~~~ 383 (386)
T 2dr1_A 366 QEMLDNLREVINELKKQK 383 (386)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 999999999988775443
No 21
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.97 E-value=6e-29 Score=250.99 Aligned_cols=355 Identities=15% Similarity=0.119 Sum_probs=241.3
Q ss_pred CCCCcccccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeE-EcCchhHH
Q 041829 74 WQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGV-IQGTASEA 152 (486)
Q Consensus 74 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~-~t~ggt~a 152 (486)
..+|.++.+.|++...+..+.+.+.. .. ....++...++..++.+++++++|.+.+ ..+ +++|||++
T Consensus 7 ~~~~~~~~~~p~p~~~~~~v~~a~~~----~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~-------~~~~~~~s~t~a 74 (416)
T 3isl_A 7 LCTPLRTIMTPGPVEVDPRVLRVMST----PV-VGQFDPAFTGIMNETMEMLRELFQTKNR-------WAYPIDGTSRAG 74 (416)
T ss_dssp CCCCCCEECSSSSCCCCHHHHHHTTS----CC-CCTTSHHHHHHHHHHHHHHHHHTTCCCS-------EEEEEESCHHHH
T ss_pred cCcccceeecCCCcCcCHHHHHHhcc----cC-CCCccHHHHHHHHHHHHHHHHHhCCCCC-------cEEEecCcHHHH
Confidence 34566677777766666555554433 11 1223455678889999999999998764 244 88899999
Q ss_pred HHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchh--HHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhC
Q 041829 153 VLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSA--LQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTI 230 (486)
Q Consensus 153 ~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~ 230 (486)
+..++.+... +++.|+++..+|++ +.++++..|+ +++.+|++.+ +.+|+++|++++++..
T Consensus 75 l~~~~~~l~~-----------~gd~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~d~~~l~~~i~~~~-- 136 (416)
T 3isl_A 75 IEAVLASVIE-----------PEDDVLIPIYGRFGYLLTEIAERYGA---NVHMLECEWG--TVFDPEDIIREIKKVK-- 136 (416)
T ss_dssp HHHHHHHHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTT--CCCCHHHHHHHHHHHC--
T ss_pred HHHHHHHhcC-----------CCCEEEEecCCcccHHHHHHHHhcCC---eeEEEecCCC--CCCCHHHHHHHHhhCC--
Confidence 9888775522 67788889899998 7788999999 9999999865 4899999999998531
Q ss_pred CCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcce
Q 041829 231 GLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCS 310 (486)
Q Consensus 231 g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g 310 (486)
+.+|+++.++|++|.+.|+++|+++|+++|+++|+|++|+.+....+ ... .++|++++++||++++|.++|
T Consensus 137 ---~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~-~~~-----~~~d~~~~s~~K~l~g~~g~g 207 (416)
T 3isl_A 137 ---PKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVK-VDE-----WKIDAAIGGTQKCLSVPSGMA 207 (416)
T ss_dssp ---CSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCC-TTT-----TTCSEEECCSSSTTCCCSSEE
T ss_pred ---CcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcc-hhh-----cCCCEEEecCccccCCCCCeE
Confidence 45899999999999999999999999999999999999875543222 111 158999999999999999999
Q ss_pred EEEEeCchHHHHHhcCC---ccc--------ccccccccCCccCC-------CCCccCC-CCC-CCcHHHHHHHHHhChh
Q 041829 311 ALWVKDRNTLIQSLSTN---PEF--------LKNKASQANMVVDY-------KDWQIPL-GRR-FRSLKLWMVLRLYGLE 370 (486)
Q Consensus 311 ~l~~r~~~~~~~~~~~~---~~y--------l~~~~~~~~~~~~~-------~~~~~~~-sr~-~~~l~~~~~l~~~g~~ 370 (486)
++++++.. +....... .+| ............+. ....... +.. .....++.+++.+...
T Consensus 208 ~~~~~~~~-~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~ 286 (416)
T 3isl_A 208 PITYNERV-ADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEE 286 (416)
T ss_dssp EEEECHHH-HHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHH-HHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 99887642 22221110 011 00000000000000 0001111 111 1223555667766666
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC---ceEEEEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEeee-E
Q 041829 371 NLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRI---FSLVCFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHTV-L 445 (486)
Q Consensus 371 g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~-~ 445 (486)
+++++.++..++++++.+.|++. ++++..++. ..+++|.+... .+ ..++.+.|.++ | +.+.+.. .
T Consensus 287 g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~------~~--~~~l~~~L~~~~g-i~v~~g~~~ 356 (416)
T 3isl_A 287 GLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCVEIPGG------ID--GESVRDMLLAQFG-IEIASSFGP 356 (416)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEEECCTT------CC--HHHHHHHHHHHHC-EECBCCCST
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEEeCCCC------CC--HHHHHHHHHHhCC-EEEecCCCC
Confidence 78999999999999999999996 888775432 45777777421 11 24677777776 6 4444332 1
Q ss_pred CCEeEEEEEecCCCCCHHH-HHHHHHHHHHHHHHH
Q 041829 446 SGKYILRFAVGAPLTEWRH-VNAAWEVMQDKASAL 479 (486)
Q Consensus 446 ~~~~~lRi~~~~~~~t~~d-i~~~~~~l~~~~~~l 479 (486)
.+..++|+++ +..++++| +++++++|+++.+++
T Consensus 357 ~~~~~iRi~~-~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 357 LAGKIWRIGT-MGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp TTTTEEEEEC-CGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEec-ccCCCcHHHHHHHHHHHHHHHHHc
Confidence 2346899999 55455555 999999999988764
No 22
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.96 E-value=3.1e-27 Score=236.52 Aligned_cols=352 Identities=14% Similarity=0.072 Sum_probs=235.6
Q ss_pred CCcccccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHH
Q 041829 76 SPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLV 155 (486)
Q Consensus 76 ~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~ 155 (486)
++.|+.+..+.+.+ ..+.+.+...+.. ..++.......++.+++++++|.+.+ ..++|+|||+++..
T Consensus 8 ~~~yl~~~~~~~~~-~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~-------~v~~t~g~t~a~~~ 74 (392)
T 2z9v_A 8 DPVITLTAGPVNAY-PEVLRGLGRTVLY-----DYDPAFQLLYEKVVDKAQKAMRLSNK-------PVILHGEPVLGLEA 74 (392)
T ss_dssp CCSEECSSSCCCCC-HHHHHHTTSCCCC-----TTSHHHHHHHHHHHHHHHHHTTCSSC-------CEEESSCTHHHHHH
T ss_pred CcceeecCCCcCCC-HHHHHHHhccccc-----cccHHHHHHHHHHHHHHHHHhCCCCC-------EEEEeCCchHHHHH
Confidence 44566664333333 3444444444432 12455566777888889999998743 58999999999998
Q ss_pred HHHHHHHHHHHHhCccCCCCeEEEecCCCchhH--HHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCc
Q 041829 156 VLLAARDKALKRVGKNSLEKLVVYASDQTHSAL--QKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLI 233 (486)
Q Consensus 156 al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~--~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~ 233 (486)
++.++.. +++.|+++..+|++. ...++..|+ +++.+|++++ +.+|+++|++++++. .+
T Consensus 75 ~~~~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~d~~~l~~~l~~~----~~ 134 (392)
T 2z9v_A 75 AAASLIS-----------PDDVVLNLASGVYGKGFGYWAKRYSP---HLLEIEVPYN--EAIDPQAVADMLKAH----PE 134 (392)
T ss_dssp HHHHHCC-----------TTCCEEEEESSHHHHHHHHHHHHHCS---CEEEEECCTT--SCCCHHHHHHHHHHC----TT
T ss_pred HHHHhcC-----------CCCEEEEecCCcccHHHHHHHHHcCC---ceEEeeCCCC--CCCCHHHHHHHHhcC----CC
Confidence 8876532 567788888899875 344566799 9999999864 489999999999652 12
Q ss_pred cEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEE
Q 041829 234 PFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALW 313 (486)
Q Consensus 234 p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~ 313 (486)
+.+|+++.++|+||.+.|+++|.++|+++|+++|+|++|+.+....+ .. .. ++|++++++||++++|.|+|+++
T Consensus 135 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~----~~-~~d~~~~s~sK~~~~~~g~G~l~ 208 (392)
T 2z9v_A 135 ITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTH-PE----DC-KADIYVTGPNKCLGAPPGLTMMG 208 (392)
T ss_dssp CCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCC-GG----GG-TCSEEEECSSSTTCCCSCCEEEE
T ss_pred CcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccc-cc----cc-cceEEEecCcccccCCCceeEEE
Confidence 56788999999999999999999999999999999999985443221 11 11 57999999999999988999998
Q ss_pred EeCchHHHHHhcCC--cc-cccccccccCCccCCCCCcc-CCCCCC-CcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHH
Q 041829 314 VKDRNTLIQSLSTN--PE-FLKNKASQANMVVDYKDWQI-PLGRRF-RSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEG 388 (486)
Q Consensus 314 ~r~~~~~~~~~~~~--~~-yl~~~~~~~~~~~~~~~~~~-~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~ 388 (486)
+++. .+....... ++ +......... .+..... .++... ...++..+++.+...|++++.++..++++++.+
T Consensus 209 ~~~~-~~~~l~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~ 284 (392)
T 2z9v_A 209 VSER-AWAKMKANPLAPRASMLSIVDWEN---AWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRA 284 (392)
T ss_dssp ECHH-HHHHHHTCTTSCCSSTTCSGGGTT---TTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ECHH-HHHHhhhccCCCCceeccHHHHHh---hhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 8753 232221111 11 1111000000 0000001 111111 113445666666555688899999999999999
Q ss_pred HHhcCCCeEEecCC----CceEEEEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEeeeECCEeEEEEEecCCCCCHH
Q 041829 389 LVAQDLRFEVVTPR----IFSLVCFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHTVLSGKYILRFAVGAPLTEWR 463 (486)
Q Consensus 389 ~l~~~~~~~~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~lRi~~~~~~~t~~ 463 (486)
.|+++ ++++..++ ..++++|++.. + .+ ..++.+.|.++ |.....+....+..++|+++..+.++++
T Consensus 285 ~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~-----~~--~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~ 355 (392)
T 2z9v_A 285 GVTAM-GLSVWAASDSIASPTTTAVRTPD-G-----VD--EKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPI 355 (392)
T ss_dssp HHHHT-TCCBSSSSGGGBCTTEEEEECCT-T-----CC--HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHH
T ss_pred HHHHc-CCeeccCCccccCCceEEEECCC-C-----CC--HHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHH
Confidence 99998 88876523 35677787642 1 11 24677778777 7443332222334689999624478999
Q ss_pred HHHHHHHHHHHHHHHH
Q 041829 464 HVNAAWEVMQDKASAL 479 (486)
Q Consensus 464 di~~~~~~l~~~~~~l 479 (486)
|+++++++|+++.+++
T Consensus 356 ~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 356 YAIAALTALGGAMNAA 371 (392)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999987754
No 23
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.96 E-value=5.8e-28 Score=237.98 Aligned_cols=340 Identities=14% Similarity=0.112 Sum_probs=230.8
Q ss_pred cCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHH
Q 041829 82 YYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAAR 161 (486)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~ 161 (486)
+.|++..++..+.+.+...+.. ..++.....+.++.+++++++|.+.+ ....++|+|||+|+..++.+..
T Consensus 4 ~~~gp~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~-----~~~v~~t~g~t~a~~~~~~~~~ 73 (353)
T 2yrr_A 4 LTPGPTPIPERVQKALLRPMRG-----HLDPEVLRVNRAIQERLAALFDPGEG-----ALVAALAGSGSLGMEAGLANLD 73 (353)
T ss_dssp CSSSSCCCCHHHHGGGGSCCCC-----TTCHHHHHHHHHHHHHHHHHHCCCTT-----CEEEEESSCHHHHHHHHHHTCS
T ss_pred CCCCCCCCCHHHHHHHhccccc-----ccCHHHHHHHHHHHHHHHHHhCCCCC-----CceEEEcCCcHHHHHHHHHHhc
Confidence 3444444445555555444432 13566677888999999999998611 0148999999999988776432
Q ss_pred HHHHHHhCccCCCCeEEEecCCCchhH--HHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEE
Q 041829 162 DKALKRVGKNSLEKLVVYASDQTHSAL--QKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCA 239 (486)
Q Consensus 162 ~~~~~~~~~~~~~~~~v~~s~~~H~s~--~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~ 239 (486)
+ +.|+++...|++. .+.++..|+ +++.+|++++ +.+|+++|++++++. ++.+|++
T Consensus 74 ------------~-d~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~d~~~l~~~l~~~-----~~~~v~~ 130 (353)
T 2yrr_A 74 ------------R-GPVLVLVNGAFSQRVAEMAALHGL---DPEVLDFPPG--EPVDPEAVARALKRR-----RYRMVAL 130 (353)
T ss_dssp ------------C-CCEEEEECSHHHHHHHHHHHHTTC---CEEEEECCTT--SCCCHHHHHHHHHHS-----CCSEEEE
T ss_pred ------------C-CcEEEEcCCCchHHHHHHHHHcCC---ceEEEeCCCC--CCCCHHHHHHHHHhC-----CCCEEEE
Confidence 2 3477778888874 566788899 9999999864 589999999999762 2457888
Q ss_pred ecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchH
Q 041829 240 TVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNT 319 (486)
Q Consensus 240 ~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~ 319 (486)
+.++|+||.+.|+++|.++|+++|+|+|+|++|+.+....+ ... . ++|.+++++||++++|.|+|+++++++.
T Consensus 131 ~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~-~~~----~-~~d~~~~s~~K~~~~~~g~G~~~~~~~~- 203 (353)
T 2yrr_A 131 VHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFS-MRA----M-GVDYAFTGSQKCLSAPPGLAPIAASLEA- 203 (353)
T ss_dssp ESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCC-HHH----H-TCSEEECCTTSTTCCCSSCEEEEECHHH-
T ss_pred EccCCCcceecCHHHHHHHHHHcCCeEEEEcCccccccccc-ccc----c-CceEEEecCcccccCCCceEEEEECHHH-
Confidence 99999999999999999999999999999999964432211 111 1 5799999999999988889999887642
Q ss_pred HHHHhcCCc-ccccccccccCCccCCCCCccCCCCC-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 041829 320 LIQSLSTNP-EFLKNKASQANMVVDYKDWQIPLGRR-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFE 397 (486)
Q Consensus 320 ~~~~~~~~~-~yl~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~ 397 (486)
+ +.+...+ .|+..... ..... .....++.. .....+..+++.+...+++++.++..++++++.+.|+++ +++
T Consensus 204 ~-~~l~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 277 (353)
T 2yrr_A 204 R-KAFTGKRGWYLDLARV--AEHWE--RGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFR 277 (353)
T ss_dssp H-HHCCCCSCSTTCHHHH--HHHHT--TCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred H-HHhccCCCccccHHHH--hhhhh--cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 3 2232111 11110000 00000 000111111 112344566666666678899999999999999999998 898
Q ss_pred EecCC--CceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEee-eECCEeEEEEEecCCCCCHHHHH-HHHHHHH
Q 041829 398 VVTPR--IFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHT-VLSGKYILRFAVGAPLTEWRHVN-AAWEVMQ 473 (486)
Q Consensus 398 ~~~~~--~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~~~~~lRi~~~~~~~t~~di~-~~~~~l~ 473 (486)
+..++ ...+++|++.. + .+ ..++.+.|.++| +.+.+. ......++|+++ +...+++|++ +++++|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~-~-----~~--~~~~~~~l~~~g-i~v~~g~~~~~~~~iRi~~-~~~~~~~~~~~~~~~~l~ 347 (353)
T 2yrr_A 278 PYPKASPLPTVLVVRPPE-G-----VD--ADRLVRALYAEG-VAVAGGIGPTRGQVLRLGL-MGEGARREAYQAFLKALD 347 (353)
T ss_dssp ESCSSSBCTTEEEEECCT-T-----CC--HHHHHHHHHHTT-EECEECCGGGTTTCEEEEC-SGGGSCHHHHHHHHHHHH
T ss_pred cccCccCCCeEEEEECCC-C-----CC--HHHHHHHHHHCC-EEEeCCccccCCCeEEEec-CccCCHHHHHHHHHHHHH
Confidence 87543 34466777632 1 11 246777888887 444433 223345899999 6777889998 9999998
Q ss_pred HHHH
Q 041829 474 DKAS 477 (486)
Q Consensus 474 ~~~~ 477 (486)
++.+
T Consensus 348 ~~l~ 351 (353)
T 2yrr_A 348 RALA 351 (353)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 24
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.96 E-value=8.7e-28 Score=236.84 Aligned_cols=337 Identities=13% Similarity=0.026 Sum_probs=231.0
Q ss_pred CCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHH
Q 041829 83 YPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARD 162 (486)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~ 162 (486)
.|++..++..+.+.+...+.. ..++.......++.+++++++|.+++ ..++|+|||+|+..++.+...
T Consensus 6 ~~~p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~-------~i~~~~g~t~a~~~~~~~~~~ 73 (352)
T 1iug_A 6 TPGPVRLHPKALEALARPQLH-----HRTEAAREVFLKARGLLREAFRTEGE-------VLILTGSGTLAMEALVKNLFA 73 (352)
T ss_dssp SSSSCCCCHHHHHHHHSCCCC-----TTSHHHHHHHHHHHHHHHHHHTCSSE-------EEEEESCHHHHHHHHHHHHCC
T ss_pred cCCCCCCCHHHHHHhccCCCC-----ccCHHHHHHHHHHHHHHHHHhCCCCc-------eEEEcCchHHHHHHHHHhccC
Confidence 344444455566666655542 23555667778888899999998753 589999999999988876532
Q ss_pred HHHHHhCccCCCCeEEEecCCCchhHH--HHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEe
Q 041829 163 KALKRVGKNSLEKLVVYASDQTHSALQ--KACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCAT 240 (486)
Q Consensus 163 ~~~~~~~~~~~~~~~v~~s~~~H~s~~--~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~ 240 (486)
+++.|+++..+|++.. ..++..|+ +++.+|++.+ +.+|+++|++ + ++.+|+++
T Consensus 74 -----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~d~~~l~~---~------~~~~v~~~ 128 (352)
T 1iug_A 74 -----------PGERVLVPVYGKFSERFYEIALEAGL---VVERLDYPYG--DTPRPEDVAK---E------GYAGLLLV 128 (352)
T ss_dssp -----------TTCEEEEEECSHHHHHHHHHHHHTTC---EEEEEECCTT--CCCCTTTSCC---S------SCSEEEEE
T ss_pred -----------CCCeEEEEeCCchhHHHHHHHHHcCC---ceEEEeCCCC--CCCCHHHHhc---c------CCcEEEEE
Confidence 5678888999999965 45566788 9999999754 5899998876 1 24578899
Q ss_pred cCCccccccCChHHHHHHHHHh--CCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCch
Q 041829 241 VGTTSSTAVDPLLALGNIAKSN--GMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRN 318 (486)
Q Consensus 241 ~~~t~tG~id~l~~I~~ia~~~--g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~ 318 (486)
.++|+||.+.|+++|.++|+++ |+++|+|++|+.+....+ .. .. ++|++++++|||+++|.|+|++++++..
T Consensus 129 ~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~-~~----~~-~~d~~~~s~~K~~~~~~g~G~~~~~~~~ 202 (352)
T 1iug_A 129 HSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVA-LE----AM-GVDAAASGSQKGLMCPPGLGFVALSPRA 202 (352)
T ss_dssp SEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCC-SG----GG-TCSEEEEESSSTTCCCSCEEEEEECHHH
T ss_pred EecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCccee-cc----cc-CeeEEEecCcccccCCCceeEEEECHHH
Confidence 9999999999999999999999 999999999975433221 11 11 5899999999999999899999886542
Q ss_pred HHHHHhcCCcccccccccccCCccCCCCCccCCCCC-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 041829 319 TLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRR-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFE 397 (486)
Q Consensus 319 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~ 397 (486)
+. .+.....|+..... . . ........++.. .....+..+++.+... ++++.++..++++++.+.|+++ +++
T Consensus 203 -~~-~~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~ 274 (352)
T 1iug_A 203 -LE-RLKPRGYYLDLARE-L-K--AQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLR 274 (352)
T ss_dssp -HH-TCCCCSSTTCHHHH-H-H--HHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred -HH-HhhCCCceeeHHHH-H-h--hcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 22 11110001000000 0 0 000000011111 1112344556555444 7889999999999999999998 898
Q ss_pred EecCC-CceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeee-ECCEeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 398 VVTPR-IFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTV-LSGKYILRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 398 ~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
+..++ ..++++|++.. + .+ ..++.+.|.++| +.+.+.. ..+..++|+++ +..++++|+++++++|+++
T Consensus 275 ~~~~~~~~~~~~~~~~~-~-----~~--~~~~~~~l~~~g-i~v~~~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~ 344 (352)
T 1iug_A 275 PVPKRFSPAVAAFYLPE-G-----VP--YARVKEAFAQRG-AVIAGGQGPLKGKVFRLSL-MGAYDRYEALGVAGMFREV 344 (352)
T ss_dssp ESCSSBCTTCEEEECCT-T-----CC--HHHHHHHHHTTT-EECEECCGGGTTTEEEECC-CSSCCHHHHHHHHHHHHHH
T ss_pred ccccccCCeEEEEEcCC-C-----CC--HHHHHHHHHHCC-EEEEeCCCccCCCEEEEEc-cccCCHHHHHHHHHHHHHH
Confidence 87543 45677887742 1 11 246778888887 4444432 12346899999 7778999999999999998
Q ss_pred HHHHH
Q 041829 476 ASALL 480 (486)
Q Consensus 476 ~~~l~ 480 (486)
.+++.
T Consensus 345 ~~~~~ 349 (352)
T 1iug_A 345 LEEIL 349 (352)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 87663
No 25
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.96 E-value=1.6e-27 Score=244.36 Aligned_cols=357 Identities=10% Similarity=0.094 Sum_probs=237.8
Q ss_pred ccccCCCCCCH---HHHHHHHHHHhcCcCcccccc-ChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHH
Q 041829 79 YFAYYPSNSSV---AGFLGEMLSAGLNIVGFSWIT-SPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVL 154 (486)
Q Consensus 79 ~~~~~~~~~~~---~~~~~~~l~~~~n~~~~~~~~-~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~ 154 (486)
|+...+.++.+ ...+.+.+....+.+...|.. .+....+.+++.+++++++|.+++ +.++|+|+|+++.
T Consensus 70 yld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-------~v~~t~g~t~al~ 142 (465)
T 3e9k_A 70 YFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEK-------EIALMNALTVNLH 142 (465)
T ss_dssp ECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGG-------GEEECSCHHHHHH
T ss_pred EecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcC-------CEEEECCHHHHHH
Confidence 55554433322 233455554333332222322 234455667788899999999764 5899999998887
Q ss_pred HHHHHHHHHHHHHhCccCCCCeEEEecCCCchhH----HHHHHHhCCCCCCe-----EEEeCCCCCCCccCHHHHHHHHH
Q 041829 155 VVLLAARDKALKRVGKNSLEKLVVYASDQTHSAL----QKACQIGGIHPQNF-----RVLKTDSSTNYSLSPDSLAEAIS 225 (486)
Q Consensus 155 ~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~----~~a~~~~g~g~~~v-----~~v~~~~~~~~~id~~~L~~~i~ 225 (486)
.++.+... .+.++..|+++..+|++. ...++..|+ ++ ..+|.+. ++.+|+++|+++|+
T Consensus 143 ~~~~~~~~--------~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~---~~~~~~v~~~~~~~--~~~~d~~~l~~~i~ 209 (465)
T 3e9k_A 143 LLMLSFFK--------PTPKRYKILLEAKAFPSDHYAIESQLQLHGL---NIEESMRMIKPREG--EETLRIEDILEVIE 209 (465)
T ss_dssp HHHHHHCC--------CCSSSCEEEEETTCCHHHHHHHHHHHHHTTC---CHHHHEEEECCCTT--CSSCCHHHHHHHHH
T ss_pred HHHHHhcc--------ccCCCCEEEEcCCcCCchHHHHHHHHHHcCC---cceeeeEEEecCCC--CCccCHHHHHHHHH
Confidence 77765432 122466799999999884 446777888 64 3335443 47999999999998
Q ss_pred HHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccC-
Q 041829 226 RDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFL- 304 (486)
Q Consensus 226 ~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~- 304 (486)
+... ++.+|+++.++|+||.+.|+++|.++|+++|+++|+|+||+.+....+- ... ++|++++++||+++
T Consensus 210 ~~~~---~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~-~~~-----~~D~~~~s~~K~l~~ 280 (465)
T 3e9k_A 210 KEGD---SIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYL-HDW-----GVDFACWCSYKYLNA 280 (465)
T ss_dssp HHGG---GEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCH-HHH-----TCCEEEECSSSTTCC
T ss_pred hcCC---CeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCch-hhc-----CCCEEEECccccccc
Confidence 6421 3578999999999999999999999999999999999999876654331 111 68999999999994
Q ss_pred CCCcceEEEEeCchHHHHHhcCCcccccccccccC---CccC--CCCCccCCCCC--CCcHHHHHHHHHhChhhHHHHHH
Q 041829 305 TNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQAN---MVVD--YKDWQIPLGRR--FRSLKLWMVLRLYGLENLQGYIR 377 (486)
Q Consensus 305 ~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~---~~~~--~~~~~~~~sr~--~~~l~~~~~l~~~g~~g~~~~~~ 377 (486)
+|.++|+++++++. +........+|......... .... .....++.+.. ....++++++..+...+++++.+
T Consensus 281 gp~~~g~l~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~ 359 (465)
T 3e9k_A 281 GAGGIAGAFIHEKH-AHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRK 359 (465)
T ss_dssp CTTCCCEEEECGGG-TTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCceEEEEEcHHH-HhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 78888999987542 11111111122111000000 0000 00011122222 22456677787777778899999
Q ss_pred HHHHHHHHHHHHHhcC----------CCeEEecCCC----ceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEee
Q 041829 378 NHIQLAKHFEGLVAQD----------LRFEVVTPRI----FSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHT 443 (486)
Q Consensus 378 ~~~~~a~~l~~~l~~~----------~~~~~~~~~~----~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 443 (486)
+..++++++.+.|+++ ++++++.+.. .++++|++.... .++.+.|.++|. .+.
T Consensus 360 ~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~~----------~~l~~~L~~~Gi-~v~-- 426 (465)
T 3e9k_A 360 KSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVPN----------KDVFQELEKRGV-VCD-- 426 (465)
T ss_dssp HHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCTT----------CCHHHHHHTTTE-ECE--
T ss_pred HHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCCH----------HHHHHHHHHCCE-EEe--
Confidence 9999999999999985 7999886542 678888875211 346777888874 333
Q ss_pred eECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 444 VLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 444 ~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
..+..++|+++++.++|++||++++++|+++.++.
T Consensus 427 -~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 427 -KRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp -EETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred -cCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 33346899998678999999999999999987643
No 26
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.96 E-value=6.8e-28 Score=241.17 Aligned_cols=356 Identities=12% Similarity=0.049 Sum_probs=241.0
Q ss_pred CCCcccccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHH
Q 041829 75 QSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVL 154 (486)
Q Consensus 75 ~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~ 154 (486)
..|+++.+.|++..++..+.+.+...+. . ...+....+..++.+++++++|.+.. ...++|+|||+++.
T Consensus 20 ~~~~~~~~~p~p~~~~~~v~~a~~~~~~---~--~~~~~~~~~~~~l~~~la~~~~~~~~------~~v~~~~gg~~al~ 88 (393)
T 3kgw_A 20 SVPTRLLLGPGPSNLAPRVLAAGSLRMI---G--HMQKEMLQIMEEIKQGIQYVFQTRNP------LTLVVSGSGHCAME 88 (393)
T ss_dssp CCCCCEECSSSCCCCCHHHHHHTTCCCC---C--TTSHHHHHHHHHHHHHHHHHHTCCCS------EEEEESCCTTTHHH
T ss_pred CCccceeccCCCCCCCHHHHHHhccccc---C--cccHHHHHHHHHHHHHHHHHhCCCCC------cEEEEeCCcHHHHH
Confidence 3567777887776666666665544221 1 23455567888889999999998753 13789999999998
Q ss_pred HHHHHHHHHHHHHhCccCCCCeEEEecCCCchh--HHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCC
Q 041829 155 VVLLAARDKALKRVGKNSLEKLVVYASDQTHSA--LQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGL 232 (486)
Q Consensus 155 ~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~ 232 (486)
.++.+... +++.|+++...|++ +...++..|. +++.+|++.+ +.+|+++|++++++..
T Consensus 89 ~~~~~~~~-----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~--~~~d~~~l~~~i~~~~---- 148 (393)
T 3kgw_A 89 TALFNLLE-----------PGDSFLTGTNGIWGMRAAEIADRIGA---RVHQMIKKPG--EHYTLQEVEEGLAQHK---- 148 (393)
T ss_dssp HHHHHHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTT--CCCCHHHHHHHHHHHC----
T ss_pred HHHHhcCC-----------CCCEEEEEeCCchhHHHHHHHHHcCC---ceEEEeCCCC--CCCCHHHHHHHHhhCC----
Confidence 88876533 67778888778763 4778888999 9999999764 4899999999998731
Q ss_pred ccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEE
Q 041829 233 IPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSAL 312 (486)
Q Consensus 233 ~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l 312 (486)
+.+|+++.++|++|.+.|+++|.++|++||+|+|+|++|+.+....+ .. -.++|++++++||++++|.++|++
T Consensus 149 -~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~-~~-----~~~~d~~~~s~sK~~~~~~g~g~~ 221 (393)
T 3kgw_A 149 -PVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIY-MD-----QQGIDIMYSSSQKVLNAPPGISLI 221 (393)
T ss_dssp -CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCC-TT-----TTTCCEEEEESSSTTCCCSSCEEE
T ss_pred -CcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccc-hh-----hcCCCEEEecCcccccCCCceeEE
Confidence 45789999999999999999999999999999999999874432221 11 115799999999999988899999
Q ss_pred EEeCchHHHHHhcCCc---c-ccccccc-ccCCccCCCCCccCCCCC-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHH
Q 041829 313 WVKDRNTLIQSLSTNP---E-FLKNKAS-QANMVVDYKDWQIPLGRR-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHF 386 (486)
Q Consensus 313 ~~r~~~~~~~~~~~~~---~-yl~~~~~-~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l 386 (486)
+++++. +........ . |+..... ...+......+. ..+.. .....+..+++.+..++++++.++..++++++
T Consensus 222 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l 299 (393)
T 3kgw_A 222 SFNDKA-KYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVI-HHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHL 299 (393)
T ss_dssp EECHHH-HHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCC-CCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EECHHH-HHHHhccCCCCCceeecHHHHHHhhhhccccCCC-CCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 886542 332221111 1 1100000 000000000000 01111 11234455666666677899999999999999
Q ss_pred HHHHhcCCCeEEecCCC----ceEEEEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEeee-ECCEeEEEEEecCCCC
Q 041829 387 EGLVAQDLRFEVVTPRI----FSLVCFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHTV-LSGKYILRFAVGAPLT 460 (486)
Q Consensus 387 ~~~l~~~~~~~~~~~~~----~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~-~~~~~~lRi~~~~~~~ 460 (486)
.+.|+++ ++++..++. ..+++|.+.. + .+ ..++.+.|.++ | +.+.+.. ..+..++|++++...+
T Consensus 300 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~-----~~--~~~~~~~l~~~~g-i~v~~g~~~~~~~~iRi~~~~~~~ 369 (393)
T 3kgw_A 300 HKHLQEM-GLKFFVKDPEIRLPTITTVTVPA-G-----YN--WRDIVSYVLDHFS-IEISGGLGPTEERVLRIGLLGYNA 369 (393)
T ss_dssp HHHHHHT-TCCBSSSSGGGBCSSEEEEECCT-T-----BC--HHHHHHHHHHHHC-EECBCCCGGGTTTEEEEECCGGGC
T ss_pred HHHHHHc-CCeeccCChhhcCCeEEEEeCCC-C-----CC--HHHHHHHHHHhCC-EEEeCCcccCCCCEEEEEecccCC
Confidence 9999998 888763221 2455566632 1 11 24677777777 7 4444332 2234689999844456
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 041829 461 EWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 461 t~~di~~~~~~l~~~~~~l~ 480 (486)
+++|+++++++|+++.+++.
T Consensus 370 ~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 370 TTENVDRVAEALREALQHCP 389 (393)
T ss_dssp CHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999887654
No 27
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.96 E-value=3.8e-28 Score=242.29 Aligned_cols=345 Identities=13% Similarity=0.042 Sum_probs=235.4
Q ss_pred CCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHH
Q 041829 84 PSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDK 163 (486)
Q Consensus 84 ~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~ 163 (486)
|++..++..+.+.+...+.. ..++....+..++.+++++++|.+... ...++|+|||+++. ++.+...
T Consensus 8 ~gp~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~~~~-----~~v~~~~g~t~al~-~~~~~~~- 75 (384)
T 3zrp_A 8 VGPTTIKEDVLVAGLENNVG-----FTSKEFVEALAYSLKGLRYVMGASKNY-----QPLIIPGGGTSAME-SVTSLLK- 75 (384)
T ss_dssp SSCSCCCHHHHHHTTCCSCC-----TTSHHHHHHHHHHHHHHHHHHTCCTTS-----EEEEEESCHHHHHH-HGGGGCC-
T ss_pred CCCCCCCHHHHHHhhccccc-----cccHHHHHHHHHHHHHHHHHhCCCCCC-----cEEEEcCCcHHHHH-HHHhhcC-
Confidence 44444444444444443321 135556788888999999999997620 15899999999998 7754422
Q ss_pred HHHHhCccCCCCeEEEecCCCchh--HHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEec
Q 041829 164 ALKRVGKNSLEKLVVYASDQTHSA--LQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATV 241 (486)
Q Consensus 164 ~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~ 241 (486)
+++.|+++...|++ +...++..|+ +++.+|++.+ +.+|+++|++++++. ++.+|+++.
T Consensus 76 ----------~gd~vi~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~ 135 (384)
T 3zrp_A 76 ----------PNDKILVVSNGVFGDRWEQIFKRYPV---NVKVLRPSPG--DYVKPGEVEEEVRKS-----EYKLVALTH 135 (384)
T ss_dssp ----------TTCEEEEECSSHHHHHHHHHHTTSSC---EEEEECCSTT--CCCCHHHHHHHHHHS-----CEEEEEEES
T ss_pred ----------CCCEEEEecCCcchHHHHHHHHHcCC---cEEEecCCCC--CCCCHHHHHHHHHhC-----CCcEEEEeC
Confidence 67788888889876 5566777888 9999999864 589999999999772 156899999
Q ss_pred CCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHH
Q 041829 242 GTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLI 321 (486)
Q Consensus 242 ~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~ 321 (486)
++|++|.+.|+++|.++|++||+++|+|++|+.+....+ ... .++|++++++||++++|.++|+++++++. +.
T Consensus 136 ~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~-~~~-----~~~d~~~~s~~K~~~~~~g~g~~~~~~~~-~~ 208 (384)
T 3zrp_A 136 VETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVK-AEE-----WNVDVYLTASQKALGSAAGLGLLLLSPKA-LS 208 (384)
T ss_dssp EETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCC-TTT-----TTCSEEEEETTSTTCCCSSEEEEEECHHH-HH
T ss_pred CCCCCceECcHHHHHHHHHhcCCEEEEECcccccCcccc-ccc-----cCCCEEEecCcccccCCCceEEEEECHHH-HH
Confidence 999999999999999999999999999999976543221 111 15899999999999988899999887643 22
Q ss_pred HH-hcC-Ccccccc-cccccC-CccCCCCCccCC-CCC-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 041829 322 QS-LST-NPEFLKN-KASQAN-MVVDYKDWQIPL-GRR-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLR 395 (486)
Q Consensus 322 ~~-~~~-~~~yl~~-~~~~~~-~~~~~~~~~~~~-sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~ 395 (486)
+. -.. ..+|... ...... ..+... ..... +.. .....+..+++.+...+++++.++..++++++.+.|+++ +
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 286 (384)
T 3zrp_A 209 ILDSQNSIAGYYLDLRNWLPVMRGAEEG-KAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-G 286 (384)
T ss_dssp HHHHCCCSCCSTTCHHHHHHHHHHHHTT-CCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred HhcCCCCCCcccccHHHHHHHHHhhccc-CCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-C
Confidence 22 110 1111100 000000 000000 00001 111 122345566776666778999999999999999999998 8
Q ss_pred eEEecCC----CceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHH
Q 041829 396 FEVVTPR----IFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEV 471 (486)
Q Consensus 396 ~~~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~ 471 (486)
+++..++ ...+++|++... ...++.+.|.++|.. +.+.......++|+++ ...++++|+++++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~-v~~g~~~~~~~iRi~~-~~~~~~e~i~~~~~~ 355 (384)
T 3zrp_A 287 LEIVARRPESYSNTVTGVILKVA---------DPQKVLAGTVNEGVE-FAPGVHPAFKYFRIGH-MGWVTPNDAIIAISV 355 (384)
T ss_dssp CCBSCSSGGGBCSSEEEEECSSS---------CHHHHHHHHHTTTCC-CEECCCTTCCEEEEEC-CSSCCHHHHHHHHHH
T ss_pred CeEccCcccccCccEEEEECCCC---------CHHHHHHHHHHCCEE-EecCCCCCcCEEEEec-cccCCHHHHHHHHHH
Confidence 8877544 345667777531 125677888888743 3333211116899999 677899999999999
Q ss_pred HHHHHHHHH
Q 041829 472 MQDKASALL 480 (486)
Q Consensus 472 l~~~~~~l~ 480 (486)
|+++.+++.
T Consensus 356 l~~~l~~~~ 364 (384)
T 3zrp_A 356 IERTLRKLG 364 (384)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 999987654
No 28
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.96 E-value=5.9e-27 Score=233.53 Aligned_cols=313 Identities=11% Similarity=0.087 Sum_probs=223.3
Q ss_pred cccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchh
Q 041829 108 WITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSA 187 (486)
Q Consensus 108 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s 187 (486)
|..++.......++.+++++++|.+++ .+++|+|||+|+..++.+....... +++.|+++..+|++
T Consensus 35 ~~~~~~~~~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~a~~~~~~~l~~~~~~-------~gd~Vl~~~~~~~~ 100 (382)
T 4eb5_A 35 HSYGFKAREAVQEAREKVAKLVNGGGG-------TVVFTSGATEANNLAIIGYAMRNAR-------KGKHILVSAVEHMS 100 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTCTTE-------EEEEESSHHHHHHHHHHHHHHHHGG-------GCCEEEEETTCCHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCC-------eEEEcCchHHHHHHHHHHHHhhccC-------CCCEEEECCCcchH
Confidence 444556677888899999999998754 4899999999999988877632111 56789999999999
Q ss_pred HHHHHHH---hCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCC
Q 041829 188 LQKACQI---GGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGM 264 (486)
Q Consensus 188 ~~~a~~~---~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~ 264 (486)
+..++.. .|+ +++.+|++++ +.+|+++|+++++++ +.+|+++.++|+||.+.|+++|.++|+++|+
T Consensus 101 ~~~~~~~~~~~g~---~~~~v~~~~~--~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~ 169 (382)
T 4eb5_A 101 VINPAKFLQKQGF---EVEYIPVGKY--GEVDVSFIDQKLRDD------TILVSVQHANNEIGTIQPVEEISEVLAGKAA 169 (382)
T ss_dssp HHHHHHHHTTTTC---EEEEECBCTT--SCBCHHHHHHHCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHTTSSE
T ss_pred HHHHHHHHHhCCc---EEEEeccCCC--CccCHHHHHHHhcCC------CeEEEEeccCCCccccCCHHHHHHHHHHCCC
Confidence 9888775 477 8999999753 689999999988642 5688999999999999999999999999999
Q ss_pred EEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCC
Q 041829 265 WFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDY 344 (486)
Q Consensus 265 ~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~ 344 (486)
+ |+|++|+.+....+ ... . ++|++++++||+ ++|.|+|++++++... .. +++.....
T Consensus 170 ~-i~D~a~~~g~~~~~-~~~----~-~~di~~~s~sK~-~g~~g~G~~~~~~~~~------l~-~~~~~~~~-------- 226 (382)
T 4eb5_A 170 L-HIDATASVGQIEVD-VEK----I-GADMLTISSNDI-YGPKGVGALWIRKEAK------LQ-PVILGGGQ-------- 226 (382)
T ss_dssp E-EEECTTTBTTBCCC-HHH----H-TCSEEEEETGGG-TCCSSCEEEEEETTCC------CC-CSSCSSCT--------
T ss_pred E-EEEcchhcCCcccC-ccc----c-CCCEEEeehHHh-cCCCceEEEEEccccc------cC-ceecCCCc--------
Confidence 9 99999985432211 111 1 579999999998 5577899999877520 11 11111000
Q ss_pred CCCccCCCC-C-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC---ceEEEEEecCCCCCcc
Q 041829 345 KDWQIPLGR-R-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRI---FSLVCFRLLPPHNDED 419 (486)
Q Consensus 345 ~~~~~~~sr-~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~---~~~v~f~~~~~~~~~~ 419 (486)
......+. . .....+..+++.+ .++++++.++..++++++.+.|+++|++++..++. .++++|++.+.
T Consensus 227 -~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 299 (382)
T 4eb5_A 227 -ENGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI----- 299 (382)
T ss_dssp -GGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTS-----
T ss_pred -cccccCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCc-----
Confidence 00001111 1 1122334455543 35788899999999999999999999999875432 45778877521
Q ss_pred cchHHHHHHHHHHHccCcEEEEeeeE--------------------CCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 420 HGNKLNHKLLDDINSTGKIFISHTVL--------------------SGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 420 ~~~~~~~~l~~~l~~~g~~~~~~~~~--------------------~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
+ ..++.+.|.+.|.. +.+... .+..++|+++ +..++++|+++++++|+++.+++
T Consensus 300 --~--~~~~~~~l~~~gi~-v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~ 373 (382)
T 4eb5_A 300 --E--GESIVLSLDMAGIQ-ASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTL-GRYNTDEDVDRLLEVLPGVIERL 373 (382)
T ss_dssp --C--HHHHHHHHHHHTCB-CBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEEC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --C--HHHHHHHHHHCCEE-EeccccccCCCCcccHHHHHcCCChhccCCeEEEEC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 14566677667743 333211 0135899998 77889999999999999998877
Q ss_pred HH
Q 041829 480 LA 481 (486)
Q Consensus 480 ~~ 481 (486)
.+
T Consensus 374 ~~ 375 (382)
T 4eb5_A 374 RS 375 (382)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 29
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.96 E-value=1.9e-26 Score=233.29 Aligned_cols=343 Identities=14% Similarity=0.145 Sum_probs=234.7
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcC--cC-c---c-ccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchh
Q 041829 78 NYFAYYPSNSSVAGFLGEMLSAGLN--IV-G---F-SWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTAS 150 (486)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~n--~~-~---~-~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt 150 (486)
-|+++..+++.++ .+.+.+...+. .. + . .+..+....+...++.+++++++|.+.+ ..++|+|||
T Consensus 24 iyld~~~~~~~~~-~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-------~v~~~~ggt 95 (423)
T 3lvm_A 24 IYLDYSATTPVDP-RVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-------EIVFTSGAT 95 (423)
T ss_dssp EECBTTTCCCCCH-HHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-------GEEEESSHH
T ss_pred EeecCCCcCCCCH-HHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC-------eEEEeCChH
Confidence 3666654444434 44455544443 11 1 1 2333445667888899999999999764 589999999
Q ss_pred HHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHh---CCCCCCeEEEeCCCCCCCccCHHHHHHHHHHH
Q 041829 151 EAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIG---GIHPQNFRVLKTDSSTNYSLSPDSLAEAISRD 227 (486)
Q Consensus 151 ~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~---g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~ 227 (486)
+|+..++.++.+...+ +++.|+++..+|+++..++..+ |+ +++.+|++++ +.+|+++|++++++.
T Consensus 96 ~a~~~a~~~l~~~~~~-------~gd~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~d~~~l~~~i~~~ 163 (423)
T 3lvm_A 96 ESDNLAIKGAANFYQK-------KGKHIITSKTEHKAVLDTCRQLEREGF---EVTYLAPQRN--GIIDLKELEAAMRDD 163 (423)
T ss_dssp HHHHHHHHHHHHHHTT-------TCCEEEEETTSCHHHHHHHHHHHHTTC---EEEEECCCTT--SCCCHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHhhcc-------CCCEEEECCccchHHHHHHHHHHHcCC---EEEEeccCCC--CccCHHHHHHhcCCC
Confidence 9999999877653211 4778999999999998888655 88 9999998863 689999999998653
Q ss_pred HhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCC
Q 041829 228 LTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNF 307 (486)
Q Consensus 228 ~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~ 307 (486)
+.+|+++.++|++|.+.|+++|+++|+++|+++|+|++|+.+....+ .. .. +.|++++++||+ ++|.
T Consensus 164 ------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~-~~----~~-~~di~~~s~sK~-~g~~ 230 (423)
T 3lvm_A 164 ------TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPID-LS----QL-KVDLMSFSGHKI-YGPK 230 (423)
T ss_dssp ------EEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCC-TT----TS-CCSEEEEESTTT-TSCS
T ss_pred ------cEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcC-hh----hc-CCCEEEechHHh-cCCC
Confidence 56889999999999999999999999999999999999987544221 11 11 589999999995 4577
Q ss_pred cceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCC-CC-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHH
Q 041829 308 DCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLG-RR-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKH 385 (486)
Q Consensus 308 ~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~s-r~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~ 385 (486)
++|++++++... ..-..+...... ......+ .. .....+..+++.+ .+.++++.++..+++++
T Consensus 231 g~G~~~~~~~~~-----~~~~~~~~~~~~---------~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~ 295 (423)
T 3lvm_A 231 GIGALYVRRKPR-----VRIEAQMHGGGH---------ERGMRSGTLPVHQIVGMGEAYRIA-KEEMATEMERLRGLRNR 295 (423)
T ss_dssp SCEEEEECBTTB-----CCCCCSSCSSCT---------TTTTCCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEecccc-----CCCCccccCCcc---------cccccCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 799999876421 011111110000 0000111 11 1112333444443 23378899999999999
Q ss_pred HHHHHhcCCCeEEecCCC---ceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeE-----------------
Q 041829 386 FEGLVAQDLRFEVVTPRI---FSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVL----------------- 445 (486)
Q Consensus 386 l~~~l~~~~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----------------- 445 (486)
+.+.|+++|+++++.++. .++++|.+.... ...+.+.|.+ +.+.+...
T Consensus 296 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~~~g~ 363 (423)
T 3lvm_A 296 LWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVE---------GESLIMALKD---LAVSSGSACTSASLEPSYVLRALGL 363 (423)
T ss_dssp HHHHHTTSTTEEEESCSTTBCTTEEEEEETTSC---------HHHHHHHTTT---EECBCCCC-----CCCCHHHHHHTC
T ss_pred HHHHHhcCCCEEEeCCccccCCCeEEEEeCCCC---------HHHHHHHHhh---heeccCccccCCCccccHHHHHhCC
Confidence 999999999999886543 357788774311 1345555544 33333211
Q ss_pred C---CEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041829 446 S---GKYILRFAVGAPLTEWRHVNAAWEVMQDKASALLA 481 (486)
Q Consensus 446 ~---~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~~ 481 (486)
. ...++|+++ +..++++|+++++++|+++.+++.+
T Consensus 364 ~~~~~~~~iRi~~-~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 364 NDELAHSSIRFSL-GRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp CHHHHHTEEEEEC-CTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccCceEEEEC-CCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 0 036899999 7888999999999999999887653
No 30
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.96 E-value=3.4e-27 Score=236.35 Aligned_cols=355 Identities=14% Similarity=0.091 Sum_probs=234.8
Q ss_pred CcccccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHH
Q 041829 77 PNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVV 156 (486)
Q Consensus 77 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~a 156 (486)
++.+.+.+++..++..+.+.+...+.. .| ++.......++.+++++++|.+.+ ...++|+|||+|+..+
T Consensus 18 ~~~~~~~~g~~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~l~~~la~~~g~~~~------~~i~~~~g~t~a~~~~ 86 (393)
T 2huf_A 18 PNKLLMGPGPSNAPQRVLDAMSRPILG---HL--HPETLKIMDDIKEGVRYLFQTNNI------ATFCLSASGHGGMEAT 86 (393)
T ss_dssp CCCEECSSSCCCCCHHHHHHTTSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCCCS------EEEEESSCHHHHHHHH
T ss_pred CCeEEecCCCCCCCHHHHHHHHhhhcc---CC--CHHHHHHHHHHHHHHHHHhCCCCC------cEEEEcCcHHHHHHHH
Confidence 344445555544555555555544432 12 455567788888999999998652 1378999999999998
Q ss_pred HHHHHHHHHHHhCccCCCCeEEEecCCCchhH--HHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCcc
Q 041829 157 LLAARDKALKRVGKNSLEKLVVYASDQTHSAL--QKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIP 234 (486)
Q Consensus 157 l~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~--~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p 234 (486)
+.++.. +++.|+++..+|++. ...++..|. +++.+|++++ +.+|+++|++++++. ++
T Consensus 87 ~~~~~~-----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~d~~~l~~~i~~~-----~~ 145 (393)
T 2huf_A 87 LCNLLE-----------DGDVILIGHTGHWGDRSADMATRYGA---DVRVVKSKVG--QSLSLDEIRDALLIH-----KP 145 (393)
T ss_dssp HHHHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTT--CCCCHHHHHHHHHHH-----CC
T ss_pred HHHHhC-----------CCCEEEEECCCcchHHHHHHHHHcCC---eeEEEeCCCC--CCCCHHHHHHHHhcc-----CC
Confidence 876532 567788888899884 345566788 9999999764 589999999999762 13
Q ss_pred EEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEE
Q 041829 235 FFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWV 314 (486)
Q Consensus 235 ~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~ 314 (486)
.+|+++.++|++|.+.|+++|.++|+++|+++|+|++++.+....+ . .. .+.|++++++||++++|.|+|++++
T Consensus 146 ~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~----~~-~~~d~~~~s~sK~l~g~~G~G~~~~ 219 (393)
T 2huf_A 146 SVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMF-M----DR-WEIDAMYTGSQKVLGAPPGITPVSF 219 (393)
T ss_dssp SEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCC-T----TT-TTCSEEECCSSSTTCCCSSCEEEEE
T ss_pred cEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcc-h----hh-cCccEEEECCCcccccCCCeEEEEE
Confidence 5788899999999999999999999999999999999875433211 1 11 1589999999999988889999988
Q ss_pred eCchHHHHHhcC---CcccccccccccCCccC-CCCCccC-CCCCC-CcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHH
Q 041829 315 KDRNTLIQSLST---NPEFLKNKASQANMVVD-YKDWQIP-LGRRF-RSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEG 388 (486)
Q Consensus 315 r~~~~~~~~~~~---~~~yl~~~~~~~~~~~~-~~~~~~~-~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~ 388 (486)
++ +........ ..+|........ ..+. ....... ++... ...++..+++.+...+++++.++..++++++.+
T Consensus 220 ~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~ 297 (393)
T 2huf_A 220 SH-RAVERYKRRNTKVKVYYWDMSLVG-DYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYR 297 (393)
T ss_dssp CH-HHHHHHHTCSSCCSCGGGCHHHHH-HHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CH-HHHHHHhhcCCCCceEEEchHHHH-hhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 63 333322221 123221100000 0000 0000001 11111 112334456555455788899999999999999
Q ss_pred HHhcCCCeEEecCC--Cc-eEEEEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEeee-ECCEeEEEEEecCCCCCHH
Q 041829 389 LVAQDLRFEVVTPR--IF-SLVCFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHTV-LSGKYILRFAVGAPLTEWR 463 (486)
Q Consensus 389 ~l~~~~~~~~~~~~--~~-~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~-~~~~~~lRi~~~~~~~t~~ 463 (486)
.|+++ +++++.++ .. .+++|++.. + .+ ..++.+.|.++ | +.+.+.. ..+..++|+++....++++
T Consensus 298 ~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~-----~~--~~~~~~~L~~~~g-i~v~~g~~~~~~~~~Ri~~~~~~~~~e 367 (393)
T 2huf_A 298 GLQDA-GFELYADPKDRLSTVTTIKVPQ-G-----VD--WLKAAQYAMKTYL-VEISGGLGPTAGQVFRIGLMGQNATTE 367 (393)
T ss_dssp HHHHT-TCCBSSCGGGBCTTEEEEECCT-T-----CC--HHHHHHHHHHHHC-EECBCCCGGGTTTEEEEECCGGGCSHH
T ss_pred HHHHc-CCeeccCccccCCcEEEEEcCC-C-----CC--HHHHHHHHHHhCC-EEEecCcccccCCEEEEEcccCcCCHH
Confidence 99998 88876543 22 367777642 1 11 24567777655 6 4544332 2234689999944356899
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041829 464 HVNAAWEVMQDKASALLA 481 (486)
Q Consensus 464 di~~~~~~l~~~~~~l~~ 481 (486)
|+++++++|+++.+++..
T Consensus 368 ~i~~~~~~l~~~~~~~~~ 385 (393)
T 2huf_A 368 RVDRVLQVFQEAVAAVKP 385 (393)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999877643
No 31
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.96 E-value=1.6e-27 Score=238.82 Aligned_cols=336 Identities=13% Similarity=0.040 Sum_probs=231.6
Q ss_pred HHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHh
Q 041829 89 VAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRV 168 (486)
Q Consensus 89 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 168 (486)
.+..+.+.+...+.. . .++...++.+++.+++++++|.++++ ..++|+|||+|+..++.++..
T Consensus 45 ~~~~v~~a~~~~~~~---~--~~~~~~~~~~~~~~~la~~~g~~~~~------~v~~t~g~t~al~~~~~~~~~------ 107 (393)
T 1vjo_A 45 AHPSVLQAMNVSPVG---H--LDPAFLALMDEIQSLLRYVWQTENPL------TIAVSGTGTAAMEATIANAVE------ 107 (393)
T ss_dssp CCHHHHHHHSSCCCC---T--TSHHHHHHHHHHHHHHHHHHTCCCSC------EEEESSCHHHHHHHHHHHHCC------
T ss_pred CCHHHHHHHhccccc---c--cCHHHHHHHHHHHHHHHHHhCCCCCc------EEEEeCchHHHHHHHHHhccC------
Confidence 334455555544432 2 24456788899999999999986420 389999999999988877643
Q ss_pred CccCCCCeEEEecCCCchh--HHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccc
Q 041829 169 GKNSLEKLVVYASDQTHSA--LQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSS 246 (486)
Q Consensus 169 ~~~~~~~~~v~~s~~~H~s--~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~t 246 (486)
+++.|+++..+|++ +..+++..|+ +++.+|++.+ +.+|+++|++++++. .+.+|+++.++|++
T Consensus 108 -----~gd~Vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~d~~~l~~~l~~~-----~~~~v~~~~~~npt 172 (393)
T 1vjo_A 108 -----PGDVVLIGVAGYFGNRLVDMAGRYGA---DVRTISKPWG--EVFSLEELRTALETH-----RPAILALVHAETST 172 (393)
T ss_dssp -----TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTT
T ss_pred -----CCCEEEEEcCChhHHHHHHHHHHcCC---ceEEEecCCC--CCCCHHHHHHHHhhC-----CceEEEEeccCCCc
Confidence 56788889999998 8899999999 9999999863 589999999999763 13478889999999
Q ss_pred cccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcC
Q 041829 247 TAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLST 326 (486)
Q Consensus 247 G~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~ 326 (486)
|.+.|+++|.++|+++|+++|+|++|+.+....+ +.. .+.|+++.++||++++|.++|+++++++ .+. .+..
T Consensus 173 G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~-----~~~-~~~di~~~s~sK~l~~~~~~G~l~~~~~-~~~-~~~~ 244 (393)
T 1vjo_A 173 GARQPLEGVGELCREFGTLLLVDTVTSLGGVPIF-----LDA-WGVDLAYSCSQKGLGCSPGASPFTMSSR-AIE-KLQR 244 (393)
T ss_dssp TEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCC-----TTT-TTCSEEECCSSSTTCSCSSCEEEEECHH-HHH-HHHT
T ss_pred ceeccHHHHHHHHHHcCCEEEEECCccccCcCCc-----ccc-cCccEEEEcCcccccCCCceEEEEECHH-HHH-HHhc
Confidence 9999999999999999999999999984322111 111 2579999999999999988999998754 232 2211
Q ss_pred C----cccccccccccCCccCCCCCccCC-CCC-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEec
Q 041829 327 N----PEFLKNKASQANMVVDYKDWQIPL-GRR-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVT 400 (486)
Q Consensus 327 ~----~~yl~~~~~~~~~~~~~~~~~~~~-sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~ 400 (486)
. .++........ +... ...... +.. .....+..+++.+..++++++.++..++++++.+.|+++ ++++..
T Consensus 245 ~~~~~~~~~~~~~~~~-~~~~--~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 320 (393)
T 1vjo_A 245 RRTKVANWYLDMNLLG-KYWG--SERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHV 320 (393)
T ss_dssp CSSCCSCSTTCHHHHH-HHHS--TTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSS
T ss_pred cCCCCCceecCcHhhh-hhhc--cCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcccC
Confidence 1 11111000000 0000 001111 111 222355566666555678889999999999999999998 888765
Q ss_pred CCC---ceEEEEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q 041829 401 PRI---FSLVCFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKA 476 (486)
Q Consensus 401 ~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~ 476 (486)
+.. .++++|++.. + .+ ..++.+.|.++ |.....+....+..++|+++....++++++++++++|+++.
T Consensus 321 ~~~~~~~~~~~~~~~~-~-----~~--~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 321 EKEYRLPTLTTVCIPD-G-----VD--GKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp CGGGBCSSEEEEECCT-T-----CC--HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CccccCCcEEEEEcCC-C-----CC--HHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 432 3567777632 1 11 25677788877 74433333233446899996355678889999999998764
No 32
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.96 E-value=1.5e-27 Score=235.92 Aligned_cols=343 Identities=13% Similarity=0.044 Sum_probs=230.9
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcCcCc-cccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHH
Q 041829 79 YFAYYPSNSSVAGFLGEMLSAGLNIVG-FSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVL 157 (486)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~n~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al 157 (486)
++.+.|++...+..+.+.+...+.... .....++...++.+++.+++++++|.+.. ...++|+|||+++..++
T Consensus 5 ~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~------~~v~~~~g~t~al~~~~ 78 (362)
T 3ffr_A 5 KIYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSN------YEVLFLASATEIWERII 78 (362)
T ss_dssp CEEECSSSCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTT------EEEEEESCHHHHHHHHH
T ss_pred ceeccCCCcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCC------cEEEEeCCchHHHHHHH
Confidence 456667665555544444443333222 12235777788899999999999998542 15899999999998887
Q ss_pred HHHHHHHHHHhCccCCCCeEEEecCCCchh--HHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccE
Q 041829 158 LAARDKALKRVGKNSLEKLVVYASDQTHSA--LQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPF 235 (486)
Q Consensus 158 ~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s--~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~ 235 (486)
.+... + .+++....|++ +...++..|+ +++.+|.+.+ +.+|+++|+ ++ .++.
T Consensus 79 ~~l~~-----------~--~~i~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~d~~~l~--~~------~~~~ 132 (362)
T 3ffr_A 79 QNCVE-----------K--KSFHCVNGSFSKRFYEFAGELGR---EAYKEEAAFG--KGFYPADIT--VP------ADAE 132 (362)
T ss_dssp HHHCS-----------S--EEEEEECSHHHHHHHHHHHHTTC---EEEEEECCTT--CCCCGGGCC--CC------TTCC
T ss_pred HhccC-----------C--cEEEEcCcHHHHHHHHHHHHhCC---CeEEEecCCC--CCCCHHHHh--cc------CCcc
Confidence 75432 4 34444455665 3456777898 9999998753 689999998 22 2356
Q ss_pred EEEEecCCccccccCChHHHHHHHHHh-CCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEE
Q 041829 236 FLCATVGTTSSTAVDPLLALGNIAKSN-GMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWV 314 (486)
Q Consensus 236 ~vv~~~~~t~tG~id~l~~I~~ia~~~-g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~ 314 (486)
+|++++++|++|.+.|+++|+++|++| |+++|+|++|+.+....+ ...+|+++.++||++++|.|+|++++
T Consensus 133 ~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~--------~~~~d~~~~s~~K~~~~~~G~g~~~~ 204 (362)
T 3ffr_A 133 IICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFD--------WTKIDSVFFSVQKCFGLPAGLGVWIL 204 (362)
T ss_dssp EEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCC--------TTSCSEEEEETTSTTCCCSCCEEEEE
T ss_pred EEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccC--------hhHCcEEEEecccccCCCCceEEEEE
Confidence 899999999999999999999999999 999999999876543211 12389999999999998889999887
Q ss_pred eCchHHHHHhcCC-----cccccccccccCCccCCCCCccCCCCC-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHH
Q 041829 315 KDRNTLIQSLSTN-----PEFLKNKASQANMVVDYKDWQIPLGRR-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEG 388 (486)
Q Consensus 315 r~~~~~~~~~~~~-----~~yl~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~ 388 (486)
++.. +.+..... .+|........ ..........+.. .....+..+++.+..++++++.++..++++++.+
T Consensus 205 ~~~~-~~~~~~~~~gg~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~ 280 (362)
T 3ffr_A 205 NDRV-IEKSKALLAKRKSIGTYHTIPSML---EKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINT 280 (362)
T ss_dssp EHHH-HHHHHHHHHTTCCCCSTTSHHHHH---HHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CHHH-HHHhhhccccCCCCcccccHHHHH---HHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 6542 22211111 11111000000 0000000011111 1223455666666666789999999999999999
Q ss_pred HHhcCCCeEEecCC----CceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHH
Q 041829 389 LVAQDLRFEVVTPR----IFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRH 464 (486)
Q Consensus 389 ~l~~~~~~~~~~~~----~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~d 464 (486)
.|+++|+++++.++ ...+++|.+.. ...++.+.|.++|.....+....+..++|+++ +..++++|
T Consensus 281 ~L~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~-~~~~~~e~ 349 (362)
T 3ffr_A 281 YIESSKVFSFGVEDAKLRSMTTIVANTTM----------LPGEINKILEPFDMAVGAGYGSKKETQIRIAN-FPAHSLEQ 349 (362)
T ss_dssp HHHHCSSEEESSSCGGGBCSSEEEEEESS----------CHHHHHHHHGGGTEEEEECSGGGTTTEEEEEC-CTTSCHHH
T ss_pred HHHHccCceeccCChhhcCCceEEEecCC----------CHHHHHHHHHHCCeEEecCccccCCCEEEEEC-CCCCCHHH
Confidence 99999999987521 24567777642 12568888888874433322223446899999 77889999
Q ss_pred HHHHHHHHHHHH
Q 041829 465 VNAAWEVMQDKA 476 (486)
Q Consensus 465 i~~~~~~l~~~~ 476 (486)
+++++++|+++.
T Consensus 350 i~~l~~~l~~~~ 361 (362)
T 3ffr_A 350 VHKLVQTLKEKI 361 (362)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998763
No 33
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.96 E-value=7.4e-27 Score=235.88 Aligned_cols=321 Identities=13% Similarity=0.092 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHHHcCC-CCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchh----HH
Q 041829 115 TELEMIVLDWLAKLLKL-PEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSA----LQ 189 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~-~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s----~~ 189 (486)
.....++.+++++++|. +.+ ..++|+|||+|+..++.+++....+ +++.|+++..+|++ +.
T Consensus 71 ~~~~~~l~~~la~~~~~~~~~-------~v~~~~g~t~a~~~~~~~~~~~~~~-------~gd~Vl~~~~~~~~~~~~~~ 136 (420)
T 1t3i_A 71 TDAYEAVRNKVAKFINARSPR-------EIVYTRNATEAINLVAYSWGMNNLK-------AGDEIITTVMEHHSNLVPWQ 136 (420)
T ss_dssp HHHHHHHHHHHHHHTTCSCGG-------GEEEESSHHHHHHHHHHHTHHHHCC-------TTCEEEEETTCCGGGTHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCC-------eEEEcCChHHHHHHHHHHhhhcccC-------CCCEEEECcchhHHHHHHHH
Confidence 45556677779999998 433 5899999999999988876421111 56788899999988 56
Q ss_pred HHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEee
Q 041829 190 KACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVD 269 (486)
Q Consensus 190 ~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD 269 (486)
..++..|+ +++.+|++. ++.+|+++|+++++++ +.+|+++.++|++|.+.|+++|.++|+++|+++|+|
T Consensus 137 ~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D 205 (420)
T 1t3i_A 137 MVAAKTGA---VLKFVQLDE--QESFDLEHFKTLLSEK------TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVD 205 (420)
T ss_dssp HHHHHHCC---EEEEECBCT--TSSBCHHHHHHHCCTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhcCc---EEEEeccCC--CCCcCHHHHHHhhCCC------ceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEE
Confidence 77888899 999999874 4689999999998642 568899999999999999999999999999999999
Q ss_pred ccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcC-Cccccccccccc-CCccCCCCC
Q 041829 270 AAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLST-NPEFLKNKASQA-NMVVDYKDW 347 (486)
Q Consensus 270 ~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~-~~~yl~~~~~~~-~~~~~~~~~ 347 (486)
++|+.+.... ..... +.|++++++||. ++|.|+|++++++ +.+. .+.. ...+........ ...+.....
T Consensus 206 ~a~~~~~~~~-~~~~~-----~~di~~~s~sK~-~~~~g~G~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 1t3i_A 206 ACQSAPHYPL-DVQLI-----DCDWLVASGHKM-CAPTGIGFLYGKE-EILE-AMPPFFGGGEMIAEVFFDHFTTGELPH 276 (420)
T ss_dssp CTTTTTTSCC-CHHHH-----TCSEEEEEGGGT-TSCTTCEEEEECH-HHHH-HSCCCSCSTTSEEEECSSCEEECCTTG
T ss_pred hhhccCCccC-chhhc-----CCCEEEEehhhh-cCCCceEEEEEch-HHHh-hcCceecCCCccccccccccCCCCchh
Confidence 9998654321 12211 589999999995 4567789888864 3332 2221 111100000000 000000011
Q ss_pred ccCCCCC-CC-cHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----CceEEEEEecCCCCCccc
Q 041829 348 QIPLGRR-FR-SLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPR-----IFSLVCFRLLPPHNDEDH 420 (486)
Q Consensus 348 ~~~~sr~-~~-~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~-----~~~~v~f~~~~~~~~~~~ 420 (486)
.+..+.. .. ..+++.+++.+...+++++.++..++++++.+.|+++|+++++.++ ..++++|.+..
T Consensus 277 ~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~------- 349 (420)
T 1t3i_A 277 KFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAG------- 349 (420)
T ss_dssp GGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETT-------
T ss_pred hccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECC-------
Confidence 1111111 11 1233335666655678889999999999999999999999988654 36788887642
Q ss_pred chHHHHHHHHHHHccCcEEEEeee--------ECC-EeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 041829 421 GNKLNHKLLDDINSTGKIFISHTV--------LSG-KYILRFAVGAPLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 421 ~~~~~~~l~~~l~~~g~~~~~~~~--------~~~-~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
.+ ..++.+.|.+.| +.+.+.. ..+ ..++|+++ +..++++|+++++++|+++.+++.
T Consensus 350 ~~--~~~~~~~l~~~g-i~v~~~~~~~~~~~~~~g~~~~iRis~-~~~~~~~~i~~~~~~l~~~~~~~~ 414 (420)
T 1t3i_A 350 LH--ASDVATMVDQDG-IAIRSGHHCTQPLHRLFDASGSARASL-YFYNTKEEIDLFLQSLQATIRFFS 414 (420)
T ss_dssp BC--HHHHHHHHHTTT-EECBCSCTTCHHHHHHTTCCCCEEEEC-CTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred CC--HHHHHHHHHHCC-eEEeeccccchHHHHhcCCCCeEEEec-CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 11 245667777777 5554431 112 56899999 777899999999999999887653
No 34
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.95 E-value=6.3e-27 Score=234.64 Aligned_cols=356 Identities=14% Similarity=0.051 Sum_probs=236.6
Q ss_pred CCCcccccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHH
Q 041829 75 QSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVL 154 (486)
Q Consensus 75 ~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~ 154 (486)
..++.+.+.+++..++..+.+.+...+.. .| ++.......++.+++++++|.+.+. ..++|+|||+++.
T Consensus 15 ~~~~~~~~~~~p~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~l~~~la~~~~~~~~~------~v~~~~g~t~al~ 83 (396)
T 2ch1_A 15 IIPEKIMMGPGPSNCSKRVLTAMTNTVLS---NF--HAELFRTMDEVKDGLRYIFQTENRA------TMCVSGSAHAGME 83 (396)
T ss_dssp CCCCCBCCSSSSCCCCHHHHHHTTSCCCC---TT--CHHHHHHHHHHHHHHHHHHTCCCSC------EEEESSCHHHHHH
T ss_pred CCCcceeecCCCCCCCHHHHHHhcccccc---CC--ChhHHHHHHHHHHHHHHHhCCCCCc------EEEECCcHHHHHH
Confidence 34556666666555555555555443322 22 4544556677888899999987531 3789999999998
Q ss_pred HHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHH--HHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCC
Q 041829 155 VVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQ--KACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGL 232 (486)
Q Consensus 155 ~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~--~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~ 232 (486)
.++.+... +++.|+++..+|.++. +.++..|+ +++.+|++. ++.+|+++|++++++.
T Consensus 84 ~~~~~~~~-----------~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~----- 142 (396)
T 2ch1_A 84 AMLSNLLE-----------EGDRVLIAVNGIWAERAVEMSERYGA---DVRTIEGPP--DRPFSLETLARAIELH----- 142 (396)
T ss_dssp HHHHHHCC-----------TTCEEEEEESSHHHHHHHHHHHHTTC---EEEEEECCT--TSCCCHHHHHHHHHHH-----
T ss_pred HHHHHhcC-----------CCCeEEEEcCCcccHHHHHHHHHcCC---ceEEecCCC--CCCCCHHHHHHHHHhC-----
Confidence 88876532 5677888989998874 57888899 999999875 3689999999999763
Q ss_pred ccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEE
Q 041829 233 IPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSAL 312 (486)
Q Consensus 233 ~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l 312 (486)
++.+|+++.++|+||.+.|+++|.++|+++|+++|+|++|+.+....+ +... ++|+++.++||++++|.++|++
T Consensus 143 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~-----~~~~-~~d~~~~s~~K~~~~~~g~g~~ 216 (396)
T 2ch1_A 143 QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFY-----MDKW-EIDAVYTGAQKVLGAPPGITPI 216 (396)
T ss_dssp CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCC-----TTTT-TCCEEECCCC-CCCCCSSCEEE
T ss_pred CCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccc-----hhhc-CcCEEEEcCCccccCCCCeEEE
Confidence 134788899999999999999999999999999999999984432211 1111 4799999999999999999988
Q ss_pred EEeCchHHHHHhcCC----cccccccc-ccc-CCccCCCCCccCCCCC-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHH
Q 041829 313 WVKDRNTLIQSLSTN----PEFLKNKA-SQA-NMVVDYKDWQIPLGRR-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKH 385 (486)
Q Consensus 313 ~~r~~~~~~~~~~~~----~~yl~~~~-~~~-~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~ 385 (486)
++++ ..+. .+... .++..... ... ........+ ..++.. .....+..+++.+..++++++.++..+++++
T Consensus 217 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 293 (396)
T 2ch1_A 217 SISP-KALD-VIRNRRTKSKVFYWDLLLLGNYWGCYDEPKR-YHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQI 293 (396)
T ss_dssp EECH-HHHH-HHHTCSSCCSCGGGCHHHHHHHTTCSSSCCC-CCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred EECH-HHHH-hhhhccCcccceEechHHHHHhhhhhcccCC-CCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8876 3333 22211 11111100 000 000000000 011111 1123445566665557788999999999999
Q ss_pred HHHHHhcCCCeEEecCCC----ceEEEEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEeeeECCEeEEEEEecCCCC
Q 041829 386 FEGLVAQDLRFEVVTPRI----FSLVCFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHTVLSGKYILRFAVGAPLT 460 (486)
Q Consensus 386 l~~~l~~~~~~~~~~~~~----~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~lRi~~~~~~~ 460 (486)
+.+.|+++ +++++.+.. ..+++|++.. + .+ ..++.+.|.++ |.....+....+..++|++++...+
T Consensus 294 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~-----~~--~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~ 364 (396)
T 2ch1_A 294 LYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPK-G-----VD--WWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECS 364 (396)
T ss_dssp HHHHHHHH-TCCBSSCSGGGBCTTEEEEECCT-T-----CC--HHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGC
T ss_pred HHHHHHHC-CCeeccCCccccCCceEEEEcCC-C-----CC--HHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcC
Confidence 99999998 888764432 1367777632 1 11 24577777765 7433222222234689999844467
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 041829 461 EWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 461 t~~di~~~~~~l~~~~~~l~ 480 (486)
+++|+++++++|+++.+++.
T Consensus 365 ~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 365 TVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp SHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999987764
No 35
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.95 E-value=3.2e-26 Score=230.05 Aligned_cols=321 Identities=15% Similarity=0.132 Sum_probs=219.6
Q ss_pred hHHHHHHHHHHHHHHcCC-CCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHH---
Q 041829 114 ATELEMIVLDWLAKLLKL-PEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQ--- 189 (486)
Q Consensus 114 ~~~le~~~~~~la~l~g~-~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~--- 189 (486)
......++.+++++++|. +.+ ..++|+|||+|+..++.+++..... +++.|+++..+|++..
T Consensus 65 ~~~~~~~l~~~la~~~~~~~~~-------~v~~~~g~t~a~~~~~~~~~~~~~~-------~gd~vl~~~~~~~~~~~~~ 130 (406)
T 1kmj_A 65 ATEKMENVRKRASLFINARSAE-------ELVFVRGTTEGINLVANSWGNSNVR-------AGDNIIISQMEHHANIVPW 130 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCSCGG-------GEEEESSHHHHHHHHHHHTHHHHCC-------TTCEEEEETTCCGGGTHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-------eEEEeCChhHHHHHHHHHhhhhcCC-------CCCEEEEecccchHHHHHH
Confidence 355566677779999998 333 5899999999999998877421111 5678888999987643
Q ss_pred -HHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEe
Q 041829 190 -KACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHV 268 (486)
Q Consensus 190 -~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhv 268 (486)
..++..|+ +++.+|++++ +.+|+++|+++++++ +.+|+++.++|++|.+.|+++|+++|+++|+++|+
T Consensus 131 ~~~~~~~g~---~~~~~~~~~~--~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 199 (406)
T 1kmj_A 131 QMLCARVGA---ELRVIPLNPD--GTLQLETLPTLFDEK------TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLV 199 (406)
T ss_dssp HHHHHHHTC---EEEEECBCTT--SCBCGGGHHHHCCTT------EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhCCC---EEEEEecCCC--CCcCHHHHHHHhccC------CeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEE
Confidence 45677899 9999998753 689999999998642 56889999999999999999999999999999999
Q ss_pred eccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcC-CcccccccccccC--CccCCC
Q 041829 269 DAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLST-NPEFLKNKASQAN--MVVDYK 345 (486)
Q Consensus 269 D~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~-~~~yl~~~~~~~~--~~~~~~ 345 (486)
|++|+.+....+ ... . +.|+++.++||++ +|.|+|++++++ +... .+.. ..++......... ..+...
T Consensus 200 D~~~~~g~~~~~-~~~----~-~~d~~~~s~~K~~-g~~G~G~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (406)
T 1kmj_A 200 DGAQAVMHHPVD-VQA----L-DCDFYVFSGHKLY-GPTGIGILYVKE-ALLQ-EMPPWEGGGSMIATVSLSEGTTWTKA 270 (406)
T ss_dssp ECTTTTTTSCCC-HHH----H-TCSEEEEEGGGTT-SCTTCEEEEECH-HHHH-HCCCSSCSTTSEEEEETTTEEEECCT
T ss_pred EchhhcCCCCCc-ccc----c-CCCEEEEEchhcc-CCCCcEEEEEeH-HHHh-hcCCcccCCCceeecccccccccCCC
Confidence 999986543221 111 1 5899999999988 566789998863 3332 2221 1110000000000 000000
Q ss_pred CCccCCCCC-CCc-HHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-CceEEEEEecCCCCCcccch
Q 041829 346 DWQIPLGRR-FRS-LKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPR-IFSLVCFRLLPPHNDEDHGN 422 (486)
Q Consensus 346 ~~~~~~sr~-~~~-l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~ 422 (486)
.+..+.+.. ... .++..+++.+...+++++.++..++++++.+.|+++|++++..++ ..++++|.+... +
T Consensus 271 ~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 343 (406)
T 1kmj_A 271 PWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKH-------H 343 (406)
T ss_dssp TGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTC-------C
T ss_pred chhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECCC-------C
Confidence 011111111 111 223345555555578888899999999999999999999987543 677888876421 1
Q ss_pred HHHHHHHHHHHccCcEEEEeee---------ECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 423 KLNHKLLDDINSTGKIFISHTV---------LSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 423 ~~~~~l~~~l~~~g~~~~~~~~---------~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
..++.+.|.+.| +.+.+.. +....++|+++ +..+|++|+++++++|+++.+.+
T Consensus 344 --~~~~~~~l~~~g-i~v~~g~~~~~~~~~~~g~~~~iRis~-~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 344 --AYDVGSFLDNYG-IAVRTGHHCAMPLMAYYNVPAMCRASL-AMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp --HHHHHHHHHHTT-EECEEECTTCHHHHHHTTCSCEEEEEC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhhCC-cEEEeccccchHHHHhcCCCCeEEEEe-ecCCCHHHHHHHHHHHHHHHHhh
Confidence 245667777777 4444332 12246899999 77889999999999999987653
No 36
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.95 E-value=3.8e-26 Score=225.56 Aligned_cols=325 Identities=14% Similarity=0.097 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHh
Q 041829 89 VAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRV 168 (486)
Q Consensus 89 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 168 (486)
++..+.+.+...+.. |..+.+..++++++.+++++++|.+.+ .+++|+|||+++..++.+++.
T Consensus 26 ~~~~v~~a~~~~~~~----~~~~~g~~~~~~~~~~~l~~~~g~~~~-------~v~~~~g~t~a~~~~~~~~~~------ 88 (359)
T 1svv_A 26 MHPKILDLMARDNMT----QHAGYGQDSHCAKAARLIGELLERPDA-------DVHFISGGTQTNLIACSLALR------ 88 (359)
T ss_dssp CCHHHHHHHHHHTTC----CCCSTTCSHHHHHHHHHHHHHHTCTTS-------EEEEESCHHHHHHHHHHHHCC------
T ss_pred CCHHHHHHHHHHHhh----ccccccccHHHHHHHHHHHHHhCCCCc-------cEEEeCCchHHHHHHHHHHhC------
Confidence 334455556555543 333455678889999999999997654 589999999999999887654
Q ss_pred CccCCCCeEEEecCCCchhHHH--HHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHH-hCCCccEEEEEecCCcc
Q 041829 169 GKNSLEKLVVYASDQTHSALQK--ACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDL-TIGLIPFFLCATVGTTS 245 (486)
Q Consensus 169 ~~~~~~~~~v~~s~~~H~s~~~--a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~-~~g~~p~~vv~~~~~t~ 245 (486)
+++.|+++..+|+++.. .++..|+ +++.+|.+ ++.+|+++|++++++.. +.+..+.+|+++.+ |+
T Consensus 89 -----~gd~vl~~~~~~~~~~~~~~~~~~g~---~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~p 156 (359)
T 1svv_A 89 -----PWEAVIATQLGHISTHETGAIEATGH---KVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNT-TE 156 (359)
T ss_dssp -----TTEEEEEETTSHHHHSSTTHHHHTTC---CEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CT
T ss_pred -----CCCEEEEcccchHHHHHHHHHhcCCC---eeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CC
Confidence 67789999999999888 4788899 99999986 36999999999997641 22334678888887 68
Q ss_pred ccccCC---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCC-cCCCceeeecccccCCCCcceEEEEeCchHHH
Q 041829 246 STAVDP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGV-EEADSFNMNAHKWFLTNFDCSALWVKDRNTLI 321 (486)
Q Consensus 246 tG~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~-~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~ 321 (486)
+|.+.| +++|.++|++||+++|+|++|.++...........-++ ..+|++++++||++ .|.++|++++++.- +.
T Consensus 157 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g-~~~~~g~l~~~~~~-~~ 234 (359)
T 1svv_A 157 VGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAG-GMFGEALIILNDAL-KP 234 (359)
T ss_dssp TSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTT-CSSCEEEEECSGGG-CT
T ss_pred CceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCC-CCCceEEEEEcccH-HH
Confidence 999988 99999999999999999999955432111111100011 25799999999985 47788988875432 11
Q ss_pred HHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Q 041829 322 QSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTP 401 (486)
Q Consensus 322 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 401 (486)
.+. .+..... .....+. .........+...+++++.++..++++++.+.| +.+++++..+
T Consensus 235 -~~~---~~~~~~~-----------~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~ 294 (359)
T 1svv_A 235 -NAR---HLIKQRG-----------ALMAKGW----LLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EACGIRLAWP 294 (359)
T ss_dssp -THH---HHHHHTT-----------CCCTTTH----HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSC
T ss_pred -HHH---HHHhcCC-----------cccccch----hhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccC
Confidence 110 0000000 0000000 011111223555677888999999999999999 5678887755
Q ss_pred CCceEEEEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 402 RIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 402 ~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
...+++++.+. .++.++|.++ |... .+....+..++|+++ +..++++|+++++++|+++.+++
T Consensus 295 ~~~~~~~~~~~-------------~~~~~~l~~~~gi~v-~~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 295 SASNQLFPILE-------------NTMIAELNNDFDMYT-VEPLKDGTCIMRLCT-SWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp CSSSEECBEEE-------------HHHHHHHTTTEECEE-EEEETTTEEEEEEEC-CTTCCHHHHHHHHHHHHHC----
T ss_pred CccceEEEEcC-------------HHHHHHHHHhcCEEE-EecccCCCceEEEEc-cCcCCHHHHHHHHHHHHHHHhcc
Confidence 55555555542 3577888888 7554 222123567999998 77889999999999999876543
No 37
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.95 E-value=1.1e-26 Score=231.29 Aligned_cols=339 Identities=14% Similarity=0.118 Sum_probs=226.4
Q ss_pred cCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHH
Q 041829 82 YYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAAR 161 (486)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~ 161 (486)
+.|++..++..+.+.+...+.. ..++...++.+++.+++++++|.+.+. ...++|+|||+++..++.+..
T Consensus 23 ~~pgp~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~g~~~~~-----~~i~~~~ggt~al~~~~~~~~ 92 (376)
T 3f0h_A 23 FTVGPVMSSEEVRAIGAEQVPY-----FRTTEFSSTMLENEKFMLEYAKAPEGS-----KAVFMTCSSTGSMEAVVMNCF 92 (376)
T ss_dssp CSSSSCCCCHHHHHHHTSCCCC-----CSSHHHHHHHHHHHHHHHHHHTCCTTC-----EEEEESSCHHHHHHHHHHHHC
T ss_pred ecCCCCCCcHHHHHHhcCCCCC-----CCCHHHHHHHHHHHHHHHHHhCCCCCc-----eEEEEcCChhHHHHHHHHhcc
Confidence 3456555555555555443321 135666788888999999999997531 124458999999988887654
Q ss_pred HHHHHHhCccCCCCeEEEecCCCchhHH--HHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEE
Q 041829 162 DKALKRVGKNSLEKLVVYASDQTHSALQ--KACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCA 239 (486)
Q Consensus 162 ~~~~~~~~~~~~~~~~v~~s~~~H~s~~--~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~ 239 (486)
. +++.|+++...+++.. ..+...|. +++.+|++.+ +.+|+++|++++++ ++.+|++
T Consensus 93 ~-----------~gd~vi~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~d~~~l~~~~~~------~~~~v~~ 150 (376)
T 3f0h_A 93 T-----------KKDKVLVIDGGSFGHRFVQLCEIHEI---PYVALKLEHG--KKLTKEKLYEYDNQ------NFTGLLV 150 (376)
T ss_dssp C-----------TTCCEEEEESSHHHHHHHHHHHHTTC---CEEEEECCTT--CCCCHHHHHTTTTS------CCCEEEE
T ss_pred C-----------CCCeEEEEeCChhhHHHHHHHHHcCC---ceEEEeCCCC--CCCCHHHHHHhhcc------CceEEEE
Confidence 3 5666766766555532 45677788 9999998753 69999999987643 2567888
Q ss_pred ecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchH
Q 041829 240 TVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNT 319 (486)
Q Consensus 240 ~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~ 319 (486)
+.++|++|.+.|+++|+++|++||+++|+|++++.+....+ .... ++|++++++||++++|.|+|+++++++ .
T Consensus 151 ~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~-~~~~-----~~d~~~~s~~K~l~~~~G~g~~~~~~~-~ 223 (376)
T 3f0h_A 151 NVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFN-MNEC-----GADVMITGSQKVLACPPGISVIVLAPR-G 223 (376)
T ss_dssp ESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCC-HHHH-----TCSEEEEETTTTTCCCSSCEEEEECHH-H
T ss_pred ecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcccc-cccc-----CccEEEecCcccccCCCceEEEEECHH-H
Confidence 98999999999999999999999999999999987554321 1111 589999999999998888999877654 2
Q ss_pred HHHHhcC-Cccc-ccccccccCCccCCCCCccCCCCCCCc---HHHHHHHHHhChh-hHHHHHHHHHHHHHHHHHHHhcC
Q 041829 320 LIQSLST-NPEF-LKNKASQANMVVDYKDWQIPLGRRFRS---LKLWMVLRLYGLE-NLQGYIRNHIQLAKHFEGLVAQD 393 (486)
Q Consensus 320 ~~~~~~~-~~~y-l~~~~~~~~~~~~~~~~~~~~sr~~~~---l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~l~~~ 393 (486)
+...... ..++ +....... ......... .... .++..+++.+... +++++.++..++++++.+.|+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 297 (376)
T 3f0h_A 224 VERVEKSKVRTMYFDLKDALK----NQERGQTPF--TPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL 297 (376)
T ss_dssp HHHHHTCCCCCSTTCHHHHHH----HHTTTCCSS--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHhhcCCCCceeecHHHHHh----hcccCCCCC--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 3222211 1121 11100000 000000001 1112 3455666666555 68899999999999999999998
Q ss_pred CCeEEecCCCc-eEEEEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEee-eECCEeEEEEEecCCCCCHHHHHHHHH
Q 041829 394 LRFEVVTPRIF-SLVCFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHT-VLSGKYILRFAVGAPLTEWRHVNAAWE 470 (486)
Q Consensus 394 ~~~~~~~~~~~-~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~~~~~~~lRi~~~~~~~t~~di~~~~~ 470 (486)
++++..++.. .++++.... .+ ..++.+.|.++ | +.+.+. ...+..++|+++ ...+|++|++++++
T Consensus 298 -~~~~~~~~~~~~~~~~~~~~-------~~--~~~l~~~l~~~~g-i~v~~g~~~~~~~~lRis~-~~~~t~e~i~~~~~ 365 (376)
T 3f0h_A 298 -PFELVSESPANGVTSVHPTT-------AN--AYDIFLKLKDEYG-IWICPNGGEMKDTIFRVGH-IGALTHEDNTTLVN 365 (376)
T ss_dssp -SEEECCSSBBTTEEEEEESS-------SC--HHHHHHHHHHHSS-EECEECCGGGTTTCEEEEC-CSSCCHHHHHHHHH
T ss_pred -CCccCccccCceEEEEeCCC-------CC--HHHHHHHHHHhCC-EEEecCccccCCCEEEEec-CCCCCHHHHHHHHH
Confidence 6887654333 344444221 11 25677888887 6 544443 122346899999 77889999999999
Q ss_pred HHHHHHH
Q 041829 471 VMQDKAS 477 (486)
Q Consensus 471 ~l~~~~~ 477 (486)
+|+++.+
T Consensus 366 ~l~~~l~ 372 (376)
T 3f0h_A 366 AFKDLQK 372 (376)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 38
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.95 E-value=1.7e-25 Score=223.08 Aligned_cols=310 Identities=14% Similarity=0.171 Sum_probs=216.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHH
Q 041829 112 PAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKA 191 (486)
Q Consensus 112 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a 191 (486)
........++.+++++++|.+.+ ..++|+|||+++..++.+++..... +++.|+++..+|+++...
T Consensus 40 ~~~~~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~a~~~~~~~~~~~~~~-------~gd~vl~~~~~~~~~~~~ 105 (384)
T 1eg5_A 40 IEANLHMEKAREKVAKVLGVSPS-------EIFFTSCATESINWILKTVAETFEK-------RKRTIITTPIEHKAVLET 105 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCGG-------GEEEESCHHHHHHHHHHHHHHHTTT-------TCCEEEECTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC-------eEEEECCHHHHHHHHHHhhhhhccC-------CCCEEEECCCCchHHHHH
Confidence 44566777788889999998754 5899999999999988877631000 567899999999998776
Q ss_pred H---HHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhC--CEE
Q 041829 192 C---QIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNG--MWF 266 (486)
Q Consensus 192 ~---~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g--~~l 266 (486)
+ +..|+ +++.+|+++ ++.+|+++|+++++++ +.+|+++.++|++|.+.|+++|.++|+++| +++
T Consensus 106 ~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~l 174 (384)
T 1eg5_A 106 MKYLSMKGF---KVKYVPVDS--RGVVKLEELEKLVDED------TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLV 174 (384)
T ss_dssp HHHHHHTTC---EEEECCBCT--TSCBCHHHHHHHCCTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEE
T ss_pred HHHHHhcCC---EEEEEccCC--CCccCHHHHHHHhCCC------CeEEEEECCCCCcccccCHHHHHHHHHhcCCceEE
Confidence 6 66788 899999875 3689999999988642 568888999999999999999999999999 999
Q ss_pred EeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCC
Q 041829 267 HVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKD 346 (486)
Q Consensus 267 hvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~ 346 (486)
|+|++|+.+.... . +... +.|++++++||+++ |.|+|++++++.. ... .++..... . ..
T Consensus 175 i~Dea~~~~~~~~-~----~~~~-~~di~~~s~sK~~g-~~G~G~~~~~~~~------~~~-~~~~~~~~----~---~~ 233 (384)
T 1eg5_A 175 HVDAVQTIGKIPF-S----LEKL-EVDYASFSAHKFHG-PKGVGITYIRKGV------PIR-PLIHGGGQ----E---RG 233 (384)
T ss_dssp EEECTTTTTTSCC-C----CTTT-CCSEEEEEGGGGTS-CTTCEEEEECTTS------CCC-CSBCSSCT----T---TT
T ss_pred EEEhhhhcCCccc-C----chhc-CCCEEEecHHHhcC-CCceEEEEEcCCC------ccc-cccccCcc----c---cc
Confidence 9999987332211 1 1122 58999999999854 5568999887642 011 11111000 0 00
Q ss_pred CccCCCCC-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC---CceEEEEEecCCCCCcccch
Q 041829 347 WQIPLGRR-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPR---IFSLVCFRLLPPHNDEDHGN 422 (486)
Q Consensus 347 ~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~---~~~~v~f~~~~~~~~~~~~~ 422 (486)
....+.. .....++.+++.. .+.++++.++..++++++.+.|++ ++++++.++ ....+.|.+... +
T Consensus 234 -~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~-------~ 303 (384)
T 1eg5_A 234 -LRSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTLSVSFPNI-------R 303 (384)
T ss_dssp -TBCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEEEEECTTC-------C
T ss_pred -ccCCCCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEEEEEeCCC-------C
Confidence 0011111 1122344455542 457888999999999999999998 689887543 235677776421 1
Q ss_pred HHHHHHHHHHHccCcEEEEeee-EC-------------------CEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041829 423 KLNHKLLDDINSTGKIFISHTV-LS-------------------GKYILRFAVGAPLTEWRHVNAAWEVMQDKASALLA 481 (486)
Q Consensus 423 ~~~~~l~~~l~~~g~~~~~~~~-~~-------------------~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~~ 481 (486)
..++.+.|.+.| +.+.+.. +. +..++|+++ +..++++|+++++++|+++.+++.+
T Consensus 304 --~~~~~~~l~~~g-i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 304 --GSTLQNLLSGYG-IYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISL-CKYNTEEEVDYFLKKIEEILSFLDL 378 (384)
T ss_dssp --HHHHHHHHHHTT-EECBC------------CHHHHTTCCHHHHHHEEEEEC-CTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred --HHHHHHHHhhCC-eEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 245677777777 4444321 11 136899999 7788999999999999999887654
No 39
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.95 E-value=1.7e-26 Score=227.98 Aligned_cols=302 Identities=14% Similarity=0.075 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHH--H
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKA--C 192 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a--~ 192 (486)
..++.++.+|+++++| ++. ..++|+|||+|+..++.+++. +++.|+++...|++...+ +
T Consensus 42 ~~~~~~l~~~la~~~g-~~~-------~v~~~~~gt~a~~~al~~~~~-----------~gd~vi~~~~~~~~~~~~~~~ 102 (356)
T 1v72_A 42 DELTAQVKRKFCEIFE-RDV-------EVFLVPTGTAANALCLSAMTP-----------PWGNIYCHPASHINNDECGAP 102 (356)
T ss_dssp SHHHHHHHHHHHHHHT-SCC-------EEEEESCHHHHHHHHHHTSCC-----------TTEEEEECTTSHHHHSSTTHH
T ss_pred chHHHHHHHHHHHHhC-CCC-------cEEEeCCccHHHHHHHHHhcC-----------CCCEEEEcCccchhhhhchHH
Confidence 4567778888999999 432 379999999999988876543 678899999999998876 7
Q ss_pred HHh--CCCCCCeEEEeCCCCCCCccCHHHHHH-HHHHHH-hCCCccEEEEEecCCccccc---cCChHHHHHHHHHhCCE
Q 041829 193 QIG--GIHPQNFRVLKTDSSTNYSLSPDSLAE-AISRDL-TIGLIPFFLCATVGTTSSTA---VDPLLALGNIAKSNGMW 265 (486)
Q Consensus 193 ~~~--g~g~~~v~~v~~~~~~~~~id~~~L~~-~i~~~~-~~g~~p~~vv~~~~~t~tG~---id~l~~I~~ia~~~g~~ 265 (486)
..+ |. +++.+|.+ ++.+|+++|++ ++++.. ..+.++.+|+++.++ ++|. .+++++|+++|++||++
T Consensus 103 ~~~~~g~---~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~-~tG~~~~~~~l~~i~~~~~~~~~~ 175 (356)
T 1v72_A 103 EFFSNGA---KLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPACVSITQAT-EVGSIYTLDEIEAIGDVCKSSSLG 175 (356)
T ss_dssp HHHTTSC---EEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSC-TTSCCCCHHHHHHHHHHHHHTTCE
T ss_pred HHHhCCc---EEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCC-CCCccCCHHHHHHHHHHHHHcCCe
Confidence 777 88 88888875 36899999999 886421 122346788888865 5999 67899999999999999
Q ss_pred EEeeccccchhccCccchhcccCC-cCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCC
Q 041829 266 FHVDAAYAGSACICPEYRQYIDGV-EEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDY 344 (486)
Q Consensus 266 lhvD~A~g~~~~~~~~~~~~~~~~-~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~ 344 (486)
+|+|++|+.+............++ ..+|++++++||+ +.|.|+|+++.+ ++...+. . ++.... +
T Consensus 176 li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~-~~~~~~~-~----~~~~~~----~---- 240 (356)
T 1v72_A 176 LHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFN-TSLATEM-S----YRRKRA----G---- 240 (356)
T ss_dssp EEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESS-GGGHHHH-H----HHHHHT----T----
T ss_pred EEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEEC-HHHHhhH-H----HHhhcc----C----
Confidence 999999975432111111111112 2689999999999 668777787764 3333221 1 110000 0
Q ss_pred CCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHH
Q 041829 345 KDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKL 424 (486)
Q Consensus 345 ~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~ 424 (486)
.+ ..........+++.+..+.+.++.++..++++++.+.|++++++++..++..+++.+++.
T Consensus 241 ---~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~------------ 302 (356)
T 1v72_A 241 ---HL---SSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD------------ 302 (356)
T ss_dssp ---CC---CSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC------------
T ss_pred ---ch---hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC------------
Confidence 00 001122333345555545566778888999999999999988999876666677776653
Q ss_pred HHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 425 NHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 425 ~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
.++.+.|.++|.. +.+..+. ..++|+++ +..++++|+++++++|+++.++.
T Consensus 303 -~~~~~~l~~~gi~-v~~g~~~-~~~iRi~~-~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 303 -SAMIDALLKAGFG-FYHDRWG-PNVVRFVT-SFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp -HHHHHHHHHTTCB-CBCSSSS-TTEEEEEC-CTTCCHHHHHHHHHHHHHTC---
T ss_pred -HHHHHHHHhcCeE-EeccccC-CCeEEEEe-cCCCCHHHHHHHHHHHHHHHHhh
Confidence 2567777777744 3332232 46899998 88889999999999999876553
No 40
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.95 E-value=4.7e-26 Score=227.80 Aligned_cols=334 Identities=9% Similarity=0.031 Sum_probs=228.4
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCc
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGK 170 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 170 (486)
..+.+.+...+......|... ..++++++.+++++.+|.+.+ ....++|+|||+++..++.+...
T Consensus 43 ~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~-----~~~i~~~~g~~~a~~~~~~~l~~-------- 107 (391)
T 3dzz_A 43 PEIMASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPK-----EDWCVFASGVVPAISAMVRQFTS-------- 107 (391)
T ss_dssp HHHHHHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCC-----GGGEEEESCHHHHHHHHHHHHSC--------
T ss_pred HHHHHHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCC-----HHHEEECCCHHHHHHHHHHHhCC--------
Confidence 344455555555433334332 688999999999999995432 12589999999999888876532
Q ss_pred cCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCC-CCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 171 NSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTD-SSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 171 ~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~-~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++.|+++..+|.++..+++..|. +++.+|++ .+++|.+|+++|++++++. .+.+|+++.++|++|.+
T Consensus 108 ---~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~i~~p~nptG~~ 176 (391)
T 3dzz_A 108 ---PGDQILVQEPVYNMFYSVIEGNGR---RVISSDLIYENSKYSVNWADLEEKLATP-----SVRMMVFCNPHNPIGYA 176 (391)
T ss_dssp ---TTCEEEECSSCCHHHHHHHHHTTC---EEEECCCEEETTEEECCHHHHHHHHTST-----TEEEEEEESSBTTTTBC
T ss_pred ---CCCeEEECCCCcHHHHHHHHHcCC---EEEEeeeeecCCceeecHHHHHHHHhcc-----CceEEEEECCCCCCCcc
Confidence 677899999999999999999999 99999986 3445679999999999631 25678889999999999
Q ss_pred ---CChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCC-cCCC--ceeeecccccC-CCCcceEEEEeCchHHHH
Q 041829 250 ---DPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGV-EEAD--SFNMNAHKWFL-TNFDCSALWVKDRNTLIQ 322 (486)
Q Consensus 250 ---d~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~-~~aD--s~~~~~hK~l~-~p~~~g~l~~r~~~~~~~ 322 (486)
+++++|+++|++||+++|+|++|+++.............. ...| .++.++||+++ ....+|+++.+++.....
T Consensus 177 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~ 256 (391)
T 3dzz_A 177 WSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRAR 256 (391)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHH
Confidence 8899999999999999999999986553221111111111 1245 78899999996 445688888876553332
Q ss_pred HhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEecC
Q 041829 323 SLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQ-DLRFEVVTP 401 (486)
Q Consensus 323 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~-~~~~~~~~~ 401 (486)
+....... +...........+..+++. +.+.++++.++..++++++.+.|++ +|++++..+
T Consensus 257 -~~~~~~~~----------------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 318 (391)
T 3dzz_A 257 -AEESFFLA----------------GIGEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDS 318 (391)
T ss_dssp -HHHHHHHH----------------TCSSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCC
T ss_pred -HHHHHHhh----------------ccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecc
Confidence 21100000 0000111122333444443 5667888999999999999999999 899998744
Q ss_pred CCceEEEEEecCCCCCcccchHHHHHHHHHHH-ccCcEEEEee-eEC--CEeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041829 402 RIFSLVCFRLLPPHNDEDHGNKLNHKLLDDIN-STGKIFISHT-VLS--GKYILRFAVGAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 402 ~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~-~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 477 (486)
.....+++.+...+ . ...++.+.|. +.| +.+.+. .+. +..++|+++ + ++++++++++++|.++.+
T Consensus 319 ~~~~~~~~~~~~~~-----~--~~~~~~~~l~~~~g-i~v~~g~~~~~~~~~~iRis~-~--~~~~~i~~~l~~l~~~l~ 387 (391)
T 3dzz_A 319 NASYLAWVDISALG-----M--NAEDFCKYLREKTG-LIISAGNGYRGNGHEFVRINL-A--CPKELVIDGMQRLKQGVL 387 (391)
T ss_dssp CBSSEEEEECGGGC-----S--CHHHHHHHHHHHHC-EECEESGGGCTTGGGEEEEEC-C--SCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEehhhcC-----C--CHHHHHHHHHHhCC-EEEeCchhhCCCCCCEEEEEe-c--CCHHHHHHHHHHHHHHHH
Confidence 43333445654211 1 1256777775 667 444443 222 347999999 3 589999999999998876
Q ss_pred HH
Q 041829 478 AL 479 (486)
Q Consensus 478 ~l 479 (486)
++
T Consensus 388 ~~ 389 (391)
T 3dzz_A 388 NL 389 (391)
T ss_dssp TC
T ss_pred Hh
Confidence 43
No 41
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.94 E-value=2.4e-26 Score=229.76 Aligned_cols=315 Identities=13% Similarity=0.134 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHH---
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKA--- 191 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a--- 191 (486)
.....++.+.+++++|.+.+ ..++|+|||+++..++.+.+.. +++.|+++..+|.++..+
T Consensus 58 ~~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~a~~~~~~~~~~~----------~gd~vl~~~~~~~~~~~~~~~ 120 (390)
T 1elu_A 58 QQLIAQLRQALAETFNVDPN-------TITITDNVTTGCDIVLWGLDWH----------QGDEILLTDCEHPGIIAIVQA 120 (390)
T ss_dssp HHHHHHHHHHHHHHTTSCGG-------GEEEESSHHHHHHHHHHHSCCC----------TTCEEEEETTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHH-------HEEEeCChHHHHHHHHhCCCCC----------CCCEEEEecCcccHHHHHHHH
Confidence 34556667779999998754 5899999999998888765211 567888999999986543
Q ss_pred -HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHH----HhCCEE
Q 041829 192 -CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAK----SNGMWF 266 (486)
Q Consensus 192 -~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~----~~g~~l 266 (486)
++..|. +++.+|++...++.+|+++|+++++++ +.+|+++.++|++|.+.|+++|.++|+ ++|+++
T Consensus 121 ~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~l 191 (390)
T 1elu_A 121 IAARFGI---TYRFFPVAATLNQGDAAAVLANHLGPK------TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRV 191 (390)
T ss_dssp HHHHHCC---EEEEECCGGGSSSSCHHHHHHTTCCTT------EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEE
T ss_pred HHHHhCc---EEEEEcCCCCCCccchHHHHHHhcCCC------ceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEE
Confidence 577899 999999864224789999999988642 568899999999999999999999999 999999
Q ss_pred EeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcC-CcccccccccccCCccCCC
Q 041829 267 HVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLST-NPEFLKNKASQANMVVDYK 345 (486)
Q Consensus 267 hvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~ 345 (486)
|+|++|+.+....+ +.. ...|+++.++|||+++|.++|+++++++- + +.+.. ..++-..........+.+.
T Consensus 192 i~Dea~~~g~~~~~-----~~~-~~~d~~~~s~~K~~~~~~g~G~~~~~~~~-~-~~~~~~~~g~~~~~~~~~~~~~~~~ 263 (390)
T 1elu_A 192 LVDGAQSAGSLPLD-----FSR-LEVDYYAFTGHKWFAGPAGVGGLYIHGDC-L-GEINPTYVGWRSITYGAKGEPTGWA 263 (390)
T ss_dssp EEECTTTBTTBCCC-----TTT-SCCSEEEEESSSTTCCCTTCEEEEECTTT-G-GGCCCCSCCTTTEEECTTSCEEEEC
T ss_pred EEEcccccCCcCCC-----hhh-cCCCEEEccccccccCCCceEEEEECHHh-H-hhcCCccccCCcccccccCcccccc
Confidence 99999985432211 111 25799999999999999999999987632 2 11111 1011000000000000000
Q ss_pred C--CccCCCCC--CCcHHHHHHHHHhChhh-HHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCceEEEEEecCCCCCc
Q 041829 346 D--WQIPLGRR--FRSLKLWMVLRLYGLEN-LQGYIRNHIQLAKHFEGLVAQDLRFEVVTP--RIFSLVCFRLLPPHNDE 418 (486)
Q Consensus 346 ~--~~~~~sr~--~~~l~~~~~l~~~g~~g-~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~--~~~~~v~f~~~~~~~~~ 418 (486)
+ .....+.. ....++..+++.+...+ ++++.++..++++++.+.|+++|+++++.+ +..++++|++.. +
T Consensus 264 ~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~-~--- 339 (390)
T 1elu_A 264 EGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDS-P--- 339 (390)
T ss_dssp SGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECS-S---
T ss_pred cchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCC-C---
Confidence 0 01111111 11233445666554444 888999999999999999999989998753 456788887742 1
Q ss_pred ccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 419 DHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 419 ~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
.+ ..++.+.|.+.| +.+.+.. +..++|+++ +..++++|+++++++|+++
T Consensus 340 --~~--~~~~~~~l~~~g-i~v~~~~--~~~~iRis~-~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 340 --LG--HRAIVQKLEEQR-IYLRTIA--DPDCIRACC-HYITDEEEINHLLARLADF 388 (390)
T ss_dssp --SC--HHHHHHHHHHTT-EECEEET--TTTEEEEEC-CTTCCHHHHHHHHHHHTTC
T ss_pred --CC--HHHHHHHHHHCC-EEEEecC--CCCeEEEec-ccCCCHHHHHHHHHHHHhh
Confidence 11 245777777777 4444432 346899999 7788999999999998754
No 42
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.94 E-value=3.1e-26 Score=226.78 Aligned_cols=313 Identities=13% Similarity=0.084 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCe-EEEecCCCchh-HHHHHH
Q 041829 116 ELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKL-VVYASDQTHSA-LQKACQ 193 (486)
Q Consensus 116 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~-~v~~s~~~H~s-~~~a~~ 193 (486)
....++.+++++++|.+.+. ...++|+|||+|+..++.+++. +++ +++.+...|.+ +..++.
T Consensus 37 ~~~~~l~~~la~~~g~~~~~-----~~v~~~~g~t~a~~~~~~~~~~-----------~gd~vi~~~~~~~~~~~~~~~~ 100 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGY-----TSVLLQGSGSYAVEAVLGSALG-----------PQDKVLIVSNGAYGARMVEMAG 100 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSE-----EEEEEESCHHHHHHHHHHHSCC-----------TTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcC-----cEEEEecChHHHHHHHHHHhcC-----------CCCeEEEEeCCCccHHHHHHHH
Confidence 34455666689999843210 1489999999999998876643 333 45556677876 567788
Q ss_pred HhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeecccc
Q 041829 194 IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYA 273 (486)
Q Consensus 194 ~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g 273 (486)
..|+ +++.+|++.+ +.+|+++|++++++.. .+.+|+++.++|++|.+.|+++|.++|++||+++|+|++|+
T Consensus 101 ~~g~---~~~~v~~~~~--~~~d~~~l~~~l~~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~ 171 (366)
T 1m32_A 101 LMGI---AHHAYDCGEV--ARPDVQAIDAILNADP----TISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSS 171 (366)
T ss_dssp HHTC---CEEEEECCTT--SCCCHHHHHHHHHHCT----TCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTT
T ss_pred HhCC---ceEEEeCCCC--CCCCHHHHHHHHhcCC----CeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCcc
Confidence 8999 9999998753 5899999999997631 24578888999999999999999999999999999999998
Q ss_pred chhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcC-CcccccccccccCCccCCCCC-ccCC
Q 041829 274 GSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLST-NPEFLKNKASQANMVVDYKDW-QIPL 351 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~-~~~~ 351 (486)
.+....+ . ... +.|+++.++||++++|.|+|++++++. +.+.+.. ..+|....... +..+ ....
T Consensus 172 ~~~~~~~-~----~~~-~~di~~~s~~K~~~~~~g~G~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 237 (366)
T 1m32_A 172 FGGIPMD-I----AAL-HIDYLISSANKCIQGVPGFAFVIAREQ--KLAACKGHSRSLSLDLYAQ------WRCMEDNHG 237 (366)
T ss_dssp TTTSCCC-T----TTT-TCSEEEEESSSTTCCCSSEEEEEEEHH--HHTTCTTCCSCSTTCHHHH------HHHHHHTTT
T ss_pred ccCcCcc-c----ccc-CccEEEecCcccccCCCceEEEEECHH--HHHhhcCCCCCccccHHHH------HhhhcccCC
Confidence 5443211 1 111 579999999999988888999998763 2222221 11221100000 0000 0001
Q ss_pred CCC--CC---cHHHHHHHHHhChhh-HHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCce-EEEEEecCC-CCCcccc
Q 041829 352 GRR--FR---SLKLWMVLRLYGLEN-LQGYIRNHIQLAKHFEGLVAQDLRFEVVTP--RIFS-LVCFRLLPP-HNDEDHG 421 (486)
Q Consensus 352 sr~--~~---~l~~~~~l~~~g~~g-~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~--~~~~-~v~f~~~~~-~~~~~~~ 421 (486)
.++ .. ...+..+++.+...| ++++.++..++++++.+.|+++ ++++..+ +..+ ++++++... + .
T Consensus 238 ~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 311 (366)
T 1m32_A 238 KWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDPQ-----Y 311 (366)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCTT-----C
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCchhcCceEEEEEcCccCC-----C
Confidence 111 11 224455666555555 7888999999999999999998 8877644 2344 677776420 1 1
Q ss_pred hHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041829 422 NKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 422 ~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 477 (486)
+ ..++.+.|.++| +.+.+....+..++|+++ +..++++|+++++++|+++.+
T Consensus 312 ~--~~~~~~~l~~~g-i~v~~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 312 R--FSEFYRRLKEQG-FVIYPGKVSQSDCFRIGN-IGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp C--HHHHHHHHHHTT-EECEECCCSSSCEEEEEC-CSSCCHHHHHHHHHHHHHHCT
T ss_pred C--HHHHHHHHHHCC-EEEECCcCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHH
Confidence 1 256777888787 555544332456899999 777899999999999988754
No 43
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.94 E-value=7.5e-26 Score=225.76 Aligned_cols=356 Identities=13% Similarity=0.049 Sum_probs=229.6
Q ss_pred CcccccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHH
Q 041829 77 PNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVV 156 (486)
Q Consensus 77 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~a 156 (486)
|+.+.+.|++...+..+.+.+...... + .+|.......+++++++++++..... .....++|+|||+++..+
T Consensus 4 ~~~~~~~p~p~~~~~~v~~a~~~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~v~~~~g~t~al~~~ 75 (385)
T 2bkw_A 4 SVDTLLIPGPIILSGAVQKALDVPSLG----H-TSPEFVSIFQRVLKNTRAVFKSAAAS---KSQPFVLAGSGTLGWDIF 75 (385)
T ss_dssp CCCEECSSSSCCCCHHHHHTTSCCCCC----T-TSHHHHHHHHHHHHHHHHHTTCCGGG---TCEEEEEESCTTHHHHHH
T ss_pred ccceeecCCCcCchHHHHHHHhccccc----c-CCHHHHHHHHHHHHHHHHHhCCCCCC---CCceEEEcCchHHHHHHH
Confidence 445667777666666665655443322 1 25655556667888899998864210 012589999999999988
Q ss_pred HHHHHHHHHHHhCccCCCCeEEEecCC--CchhHHHHHHHhCCCCCCeEEEeC-CCCCCCccCHHHHHHHHHHHHhCCCc
Q 041829 157 LLAARDKALKRVGKNSLEKLVVYASDQ--THSALQKACQIGGIHPQNFRVLKT-DSSTNYSLSPDSLAEAISRDLTIGLI 233 (486)
Q Consensus 157 l~~a~~~~~~~~~~~~~~~~~v~~s~~--~H~s~~~a~~~~g~g~~~v~~v~~-~~~~~~~id~~~L~~~i~~~~~~g~~ 233 (486)
+.+..... .+++.|++... .|.++...++..|+ +++.+|+ +. ++.+|+++|++++++. +
T Consensus 76 ~~~~~~~~--------~~gd~vlv~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~~d~~~l~~~l~~~-----~ 137 (385)
T 2bkw_A 76 ASNFILSK--------APNKNVLVVSTGTFSDRFADCLRSYGA---QVDVVRPLKI--GESVPLELITEKLSQN-----S 137 (385)
T ss_dssp HHHHSCTT--------CSCCEEEEECSSHHHHHHHHHHHHTTC---EEEEECCSST--TSCCCHHHHHHHHHHS-----C
T ss_pred HHHHhccC--------CCCCeEEEEcCCcchHHHHHHHHHcCC---ceEEEecCCC--CCCCCHHHHHHHHhcC-----C
Confidence 87653100 04555555533 34555577888899 9999998 64 3689999999999761 1
Q ss_pred cEEEEEecCCccccccCChHHHHHHHHHh--CCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceE
Q 041829 234 PFFLCATVGTTSSTAVDPLLALGNIAKSN--GMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSA 311 (486)
Q Consensus 234 p~~vv~~~~~t~tG~id~l~~I~~ia~~~--g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~ 311 (486)
+.+|+++.++|+||.+.|+++|+++|+++ |+++|+|++|+.+....+ . ... ++|++++++||++++|.|+|+
T Consensus 138 ~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~-~----~~~-~~d~~~~s~~K~~~~~~G~G~ 211 (385)
T 2bkw_A 138 YGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFE-F----DEW-GVDFALTASQKAIGAPAGLSI 211 (385)
T ss_dssp CSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCC-T----TTT-TCSEEEEESSSTTCCCSCEEE
T ss_pred CCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcccc-c----ccc-CceEEEecCccccccCCcceE
Confidence 45788899999999999999999999999 999999999975443221 1 111 579999999999998889999
Q ss_pred EEEeCchHHHHHhc-----CCcccccccc-cccC-CccCCCCCccCCCCC-CCcHHHHHHHHHhChhhHHHHHHHHHHHH
Q 041829 312 LWVKDRNTLIQSLS-----TNPEFLKNKA-SQAN-MVVDYKDWQIPLGRR-FRSLKLWMVLRLYGLENLQGYIRNHIQLA 383 (486)
Q Consensus 312 l~~r~~~~~~~~~~-----~~~~yl~~~~-~~~~-~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a 383 (486)
++++++. +.+.+. ....|..... .... ...........++.. ....++..+++.+...+++++.++..+++
T Consensus 212 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 290 (385)
T 2bkw_A 212 SLCSSRF-MDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMS 290 (385)
T ss_dssp EEECHHH-HHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred EEEcHHH-HHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 9887542 321221 0011110000 0000 000000000001111 11234445566555556888899999999
Q ss_pred HHHHHHH-hcCCCeEEecC-C----CceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeE--CCEeEEEEE-
Q 041829 384 KHFEGLV-AQDLRFEVVTP-R----IFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVL--SGKYILRFA- 454 (486)
Q Consensus 384 ~~l~~~l-~~~~~~~~~~~-~----~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~~~~~lRi~- 454 (486)
+++.+.| +++ ++++..+ + ..++++|++.. ..++.+.|.+.| +.+.+... .+..++|++
T Consensus 291 ~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~g-i~v~~g~~~~~~~~~iRis~ 357 (385)
T 2bkw_A 291 DWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVAD-----------PPDVIAFLKSHG-VVIAGGIHKDIGPKYIRIGH 357 (385)
T ss_dssp HHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECSC-----------HHHHHHHHHHTT-EECBCCCCTTTGGGEEEECC
T ss_pred HHHHHHHHHhc-CceecccCcccccCCceEEEecCC-----------HHHHHHHHHHCC-eEEeCCCCcccCCCEEEEEc
Confidence 9999999 888 8888742 1 35677777631 256777777777 55544322 134689999
Q ss_pred ec-C-CCCCHHHHHHHHHHHHHHHHH
Q 041829 455 VG-A-PLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 455 ~~-~-~~~t~~di~~~~~~l~~~~~~ 478 (486)
+. + ..+|++|+++++++|+++.++
T Consensus 358 ~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 358 MGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp CGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred cccccccCCHHHHHHHHHHHHHHHHh
Confidence 62 1 247999999999999887643
No 44
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.94 E-value=1.4e-26 Score=232.38 Aligned_cols=347 Identities=13% Similarity=0.101 Sum_probs=209.6
Q ss_pred CCcccccCCCCCCHHHHHHHHHHHhc----CcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhH
Q 041829 76 SPNYFAYYPSNSSVAGFLGEMLSAGL----NIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASE 151 (486)
Q Consensus 76 ~p~~~~~~~~~~~~~~~~~~~l~~~~----n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~ 151 (486)
+..|+++..+++.++.++ +.+...+ .+....+..+....++.+++.+++++++|.+++ ..++|+|||+
T Consensus 20 ~~iyld~~~~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-------~v~~~~g~t~ 91 (400)
T 3vax_A 20 HMTYLDAAATTRVDQRVA-DIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPD-------ELIFTSGATE 91 (400)
T ss_dssp --CCCCCCCCSSSCHHHH-HHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGG-------GEEEESCHHH
T ss_pred CcEEecCCCCCCCCHHHH-HHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCC-------cEEEeCCHHH
Confidence 345666654444444333 3333322 222223444555677888899999999999754 5899999999
Q ss_pred HHHHHHHHHHHHHHHHhCccCCCCe-EEEecCCCchhHHHHHHHh---CCCCCCeEEEeCCCCCCCccCHHHHHHHHHHH
Q 041829 152 AVLVVLLAARDKALKRVGKNSLEKL-VVYASDQTHSALQKACQIG---GIHPQNFRVLKTDSSTNYSLSPDSLAEAISRD 227 (486)
Q Consensus 152 a~~~al~~a~~~~~~~~~~~~~~~~-~v~~s~~~H~s~~~a~~~~---g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~ 227 (486)
|+..++.+......+ +++ .|+++...|+++...+..+ |+ +++.+|++++ +.+|+++|++++++.
T Consensus 92 al~~~~~~l~~~~~~-------~gd~~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~d~~~l~~~i~~~ 159 (400)
T 3vax_A 92 SNNIALLGLAPYGER-------TGRRHIITSAIEHKAVLEPLEHLAGRGF---EVDFLTPGPS--GRISVEGVMERLRPD 159 (400)
T ss_dssp HHHHHHHTTHHHHHH-------HTCCEEEEETTSCHHHHHHHHHHHTTTC---EEEEECCCTT--CCCCHHHHHTTCCTT
T ss_pred HHHHHHHHHHHhhcc-------CCCCEEEECccccHhHHHHHHHHHhcCC---eEEEEccCCC--CCcCHHHHHHhcCCC
Confidence 999988876522111 566 8888999999988777664 77 8999998863 699999999988643
Q ss_pred HhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCC
Q 041829 228 LTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNF 307 (486)
Q Consensus 228 ~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~ 307 (486)
+.+|+++.++|++|.+.|+++|.++|+++|+++++|++|+.+.... .+... +|+++.++||+ ++|.
T Consensus 160 ------~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~-----~~~~~--~d~~~~s~~K~-~g~~ 225 (400)
T 3vax_A 160 ------TLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPG-----DLTTP--IDMISISGHKI-GAPK 225 (400)
T ss_dssp ------EEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGG-----GGGSC--CSEEEEETGGG-TSCS
T ss_pred ------ceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCc-----Chhhc--CcEEEEeHHHh-CCCC
Confidence 5689999999999999999999999999999999999998544321 11222 89999999995 5677
Q ss_pred cceEEE-EeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcH---HHHHHHHHhChhhHHHHHHHHHHHH
Q 041829 308 DCSALW-VKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSL---KLWMVLRLYGLENLQGYIRNHIQLA 383 (486)
Q Consensus 308 ~~g~l~-~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l---~~~~~l~~~g~~g~~~~~~~~~~~a 383 (486)
++|+++ ++++...... ....+++..... ......+ ..... .+..+++.+ .++++++.++..+++
T Consensus 226 g~g~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~ 293 (400)
T 3vax_A 226 GVGALVTRRREEMDDER-VPLEPIMFGGGQ---------ERKLRPG-TLPVPLIMGLAEAAKIF-EAEHAQWQVAAQDLR 293 (400)
T ss_dssp SCEEEEECBCSSSTTCB-CCCCCSSCSSCT---------GGGTSCS-CCCHHHHHHHHHHHHHH-HHSHHHHHHHHHHHH
T ss_pred ceEEEEEecchhccccc-cccCceecCCCc---------eeeeecC-CCCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHH
Confidence 899999 8874211000 000111110000 0000111 11122 222334433 457788999999999
Q ss_pred HHHHHHHhcCCCeEEecCCC---ceEEEEEecCCCCCcccchHHHHHHHHHHH-----ccCcEEEEeee----------E
Q 041829 384 KHFEGLVAQDLRFEVVTPRI---FSLVCFRLLPPHNDEDHGNKLNHKLLDDIN-----STGKIFISHTV----------L 445 (486)
Q Consensus 384 ~~l~~~l~~~~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~-----~~g~~~~~~~~----------~ 445 (486)
+++.+.|+ .+++++..++. .+++.|.+.... .. ++.+.|. ..|..+..... .
T Consensus 294 ~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~l~~~L~~gi~v~~g~~~~~~~~~~~~~~~~~g~ 363 (400)
T 3vax_A 294 SRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDVD-----AE----AFLVTLKDLVAVATGSASTSASFTPSHVLRAMGL 363 (400)
T ss_dssp HHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTCC-----HH----HHHHHHHHHHHHTTTTEEEEEEECCHHHHHTTTC
T ss_pred HHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCCC-----HH----HHHHHHhcCcEEEecccccCCCCCccHHHHHcCC
Confidence 99999999 88999876543 357777765311 22 3333333 23333322110 0
Q ss_pred C---CEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 446 S---GKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 446 ~---~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
. ...++|+++++..++++|+++++++|+++.++
T Consensus 364 ~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 364 PEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp CHHHHTSEEEEEEEEC--------------------
T ss_pred CccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 0 02689999844567899999999999887653
No 45
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.94 E-value=5.1e-25 Score=220.88 Aligned_cols=300 Identities=11% Similarity=0.078 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHH
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQI 194 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 194 (486)
.....++.+++++++|.+. .+++++||+++..++.+... +++.|+++...|.++..+++.
T Consensus 87 ~~~~~~l~~~la~~~~~~~---------~i~~~sGt~a~~~~l~~~~~-----------~gd~v~~~~~~~~~~~~~~~~ 146 (399)
T 3tqx_A 87 QTIHKELEKDISEFLGTDD---------TILYSSCFDANGGLFETLLG-----------PEDAIISDELNHASIIDGIRL 146 (399)
T ss_dssp BHHHHHHHHHHHHHHTCSE---------EEEESCHHHHHHTTHHHHCC-----------TTCEEEEETTCCHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHCCCc---------EEEECchHHHHHHHHHHhcC-----------CCCEEEECCcccHHHHHHHHH
Confidence 3455556666999999764 46666779998887765432 677899999999999999999
Q ss_pred hCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccc
Q 041829 195 GGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAG 274 (486)
Q Consensus 195 ~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~ 274 (486)
.|. +++.+|. +|+++|++++++....+.++.+|+++.++|++|.+.|+++|.++|+++|+++|+|++|+.
T Consensus 147 ~g~---~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~ 216 (399)
T 3tqx_A 147 CKA---QRYRYKN-------NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAV 216 (399)
T ss_dssp CCS---EEEEECT-------TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTT
T ss_pred cCC---ceeEeCC-------CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccc
Confidence 999 8888874 478899999988765555688999999999999999999999999999999999999964
Q ss_pred hhccCccchhc--ccC-CcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCC
Q 041829 275 SACICPEYRQY--IDG-VEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPL 351 (486)
Q Consensus 275 ~~~~~~~~~~~--~~~-~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 351 (486)
+... ...... ..+ ....|+++.++||+++++.+ |+++.++ ..+........+|...
T Consensus 217 ~~~~-~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~-~~~~~~~~~~~~~~~~------------------ 275 (399)
T 3tqx_A 217 GFIG-ENGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHK-EIIEWLRNRSRPYLFS------------------ 275 (399)
T ss_dssp TTSS-TTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECH-HHHHHHHHHCHHHHSS------------------
T ss_pred cccC-CCCCchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCH-HHHHHHHHhCcceecc------------------
Confidence 3321 111111 112 13679999999999995544 7766654 3333222222233211
Q ss_pred CCCCCcH---HHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHH
Q 041829 352 GRRFRSL---KLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKL 428 (486)
Q Consensus 352 sr~~~~l---~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l 428 (486)
.....+ .+..+++... ++.+++.++..++++++.+.|+++ ++++. ++..+++++.+.. .....++
T Consensus 276 -~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~--------~~~~~~~ 343 (399)
T 3tqx_A 276 -NTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKL-GFQLV-PGNHPIIPVMLGD--------AQLATNM 343 (399)
T ss_dssp -CCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSSSEEEEEEEC--------HHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCC--------HHHHHHH
Confidence 011222 3333444332 567888999999999999999988 78766 6667778887753 2344678
Q ss_pred HHHHHccCcEEEEeeeE----CCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 429 LDDINSTGKIFISHTVL----SGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 429 ~~~l~~~g~~~~~~~~~----~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
.+.|.++| +.+.+..+ .+..++|+++ +..++++|+++++++|+++.+++
T Consensus 344 ~~~l~~~g-i~v~~~~~~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 344 ADHLLQEG-IYVVGFSYPVVPMGKARIRVQM-SAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp HHHHHHTT-EECCEECTTTSCTTCEEEEEEC-CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCC-CEEeeeCCCCCCCCCceEEEEe-ecCCCHHHHHHHHHHHHHHHHHh
Confidence 88888887 55554432 3457999999 77889999999999999987754
No 46
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.94 E-value=9.9e-25 Score=221.10 Aligned_cols=300 Identities=14% Similarity=0.102 Sum_probs=212.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHH
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQI 194 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 194 (486)
.....++.+++++++|.+. .+++++||++|..++.+... +++.|+++...|.++..+++.
T Consensus 108 ~~~~~~l~~~la~~~g~~~---------~i~~~sGs~a~~~al~~l~~-----------~gd~vl~~~~~h~~~~~~~~~ 167 (427)
T 2w8t_A 108 FHDHMEVEQALRDFYGTTG---------AIVFSTGYMANLGIISTLAG-----------KGEYVILDADSHASIYDGCQQ 167 (427)
T ss_dssp CHHHHHHHHHHHHHHTCSE---------EEEESCHHHHHHHHHHHHSC-----------TTCEEEEETTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCc---------eEEecCcHHHHHHHHHHhcC-----------CCCEEEECCcccHHHHHHHHH
Confidence 3555666667899998763 57788889999887765432 567889999999999999999
Q ss_pred hCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccc
Q 041829 195 GGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAG 274 (486)
Q Consensus 195 ~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~ 274 (486)
.|. +++.+| .+|+++|++++++... ..+.+|+++.+.|++|.+.|+++|.++|++||+++++|++|++
T Consensus 168 ~g~---~~~~~~-------~~d~~~le~~l~~~~~--~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~ 235 (427)
T 2w8t_A 168 GNA---EIVRFR-------HNSVEDLDKRLGRLPK--EPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSM 235 (427)
T ss_dssp SCS---EEEEEC-------TTCHHHHHHHHHTSCS--SSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTT
T ss_pred cCC---eeEEeC-------CCCHHHHHHHHHhccC--CCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccc
Confidence 998 887776 3699999999975311 1467899999999999999999999999999999999999987
Q ss_pred hhccCccchhcc--cCC-cCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCC-cccccccccccCCccCCCCCccC
Q 041829 275 SACICPEYRQYI--DGV-EEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTN-PEFLKNKASQANMVVDYKDWQIP 350 (486)
Q Consensus 275 ~~~~~~~~~~~~--~~~-~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~~ 350 (486)
+.+. +...... .++ .++|+++.++||+++.| + |+++.++ +.. +.+... .+|...
T Consensus 236 ~~~~-~~g~~~~~~~~~~~~~di~~~s~sK~~g~~-g-G~v~~~~-~l~-~~l~~~~~~~~~~----------------- 293 (427)
T 2w8t_A 236 GFFG-PNGRGVYEAQGLEGQIDFVVGTFSKSVGTV-G-GFVVSNH-PKF-EAVRLACRPYIFT----------------- 293 (427)
T ss_dssp TTSS-TTSCCHHHHTTCTTCCSEEEEESSSTTCSC-C-EEEEECC-TTG-GGGGGTCHHHHSS-----------------
T ss_pred cccC-CCCCchHhhcCCCcCCcEEEecchhhhccC-C-CEEEeCH-HHH-HHHHHhccccccc-----------------
Confidence 6542 1111111 122 25799999999999843 4 7777764 222 222211 122211
Q ss_pred CCCC-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-CceEEEEEecCCCCCcccchHHHHHH
Q 041829 351 LGRR-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPR-IFSLVCFRLLPPHNDEDHGNKLNHKL 428 (486)
Q Consensus 351 ~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~~~l 428 (486)
++.. .....+..+++.+. .++++.++..++++++.+.|+++ ++++..++ ..+++++.+.. .....++
T Consensus 294 ~~~~~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--------~~~~~~l 362 (427)
T 2w8t_A 294 ASLPPSVVATATTSIRKLM--TAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLED--------QEQAAMM 362 (427)
T ss_dssp CCCCHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEESS--------HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEECC--------HHHHHHH
Confidence 1111 11123334555442 24678888999999999999988 88887455 66788887742 2344678
Q ss_pred HHHHHccCcEEEEeeeE----CCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041829 429 LDDINSTGKIFISHTVL----SGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALLA 481 (486)
Q Consensus 429 ~~~l~~~g~~~~~~~~~----~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~~ 481 (486)
.+.|.++| +++.+... .+..++|+++ +..+|++|+++++++|+++.+++.+
T Consensus 363 ~~~L~~~G-i~v~~~~~~~~~~~~~~lRi~~-~~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 363 WQALLDGG-LYVNMARPPATPAGTFLLRCSI-CAEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp HHHHHHTT-EECEEECTTTSCTTCEEEEEEC-CTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCC-eEEeeeCCCCCCCCCeEEEEEe-CCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 88888887 55554322 2456999999 7778999999999999999876653
No 47
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.94 E-value=1.5e-25 Score=225.44 Aligned_cols=341 Identities=12% Similarity=0.074 Sum_probs=223.3
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCc----CccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHH
Q 041829 78 NYFAYYPSNSSVAGFLGEMLSAGLNI----VGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAV 153 (486)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~n~----~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~ 153 (486)
.|+++..+++.++. +.+.+...+.. ....|..++.......++.+++++++|.+++ ..++|+|||+++
T Consensus 28 ~~ld~~~~~~~~~~-v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~al 99 (406)
T 3cai_A 28 VHFDAPAGMLIPDS-VATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPG-------GVVLGADRAVLL 99 (406)
T ss_dssp EECBGGGCCCCCHH-HHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGG-------GEEEESCHHHHH
T ss_pred EEEeCCCcCCCCHH-HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCC-------eEEEeCChHHHH
Confidence 46665533333333 33333333321 1223433444566777788889999998754 589999999888
Q ss_pred HHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHH----hCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHh
Q 041829 154 LVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQI----GGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLT 229 (486)
Q Consensus 154 ~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~----~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~ 229 (486)
..++.+.... .+ +++.|+++..+|.++..++.. .|. +++.+|++++ ++.+|+++|+++++++
T Consensus 100 ~~~~~~l~~~-~~-------~gd~vi~~~~~~~~~~~~~~~~~~~~g~---~v~~v~~~~~-~~~~d~~~l~~~l~~~-- 165 (406)
T 3cai_A 100 SLLAEASSSR-AG-------LGYEVIVSRLDDEANIAPWLRAAHRYGA---KVKWAEVDIE-TGELPTWQWESLISKS-- 165 (406)
T ss_dssp HHHHHHTGGG-GB-------TTCEEEEETTSCGGGTHHHHHHHHHHBC---EEEEECCCTT-TCCCCGGGHHHHCCTT--
T ss_pred HHHHHHHhhc-cC-------CCCEEEEcCCccHHHHHHHHHHHHhcCC---eEEEEecCcc-cCCcCHHHHHHHhCCC--
Confidence 7766543100 01 567888899999987665544 688 9999998743 3689999999988642
Q ss_pred CCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcc
Q 041829 230 IGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDC 309 (486)
Q Consensus 230 ~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~ 309 (486)
+.+|+++.++|+||.+.|+++|.++|+++|+++|+|++|+.+....+ ... . ++|++++++||+++ |. +
T Consensus 166 ----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~~----~-~~d~~~~s~~K~~g-~~-~ 233 (406)
T 3cai_A 166 ----TRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLD-IRE----T-DADVVTVNAHAWGG-PP-I 233 (406)
T ss_dssp ----EEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCC-HHH----H-CCSEEEEEGGGGTS-CS-C
T ss_pred ----ceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCC-chh----c-CCCEEEeehhhhcC-CC-c
Confidence 56889999999999999999999999999999999999985443222 111 1 58999999999875 65 7
Q ss_pred e-EEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCC-CCCCc-HHHHHHHHHhChh--------------hH
Q 041829 310 S-ALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLG-RRFRS-LKLWMVLRLYGLE--------------NL 372 (486)
Q Consensus 310 g-~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~s-r~~~~-l~~~~~l~~~g~~--------------g~ 372 (486)
| ++++++ ..+ +.+.....+.... .......+ ....+ ..+..+++.+... ++
T Consensus 234 G~~~~~~~-~~~-~~l~~~~~~~~~~----------~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~ 301 (406)
T 3cai_A 234 GAMVFRDP-SVM-NSFGSVSTNPYAT----------GPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSM 301 (406)
T ss_dssp EEEEESCH-HHH-HTSCCCCSCTTCC----------GGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHH
T ss_pred CeEEEEeh-HHH-hhcCCcccCCCCC----------ccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhH
Confidence 8 777654 322 2221111010000 00001111 11111 1233344443221 47
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEecCC--CceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeee------
Q 041829 373 QGYIRNHIQLAKHFEGLVAQDLRFEVVTPR--IFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTV------ 444 (486)
Q Consensus 373 ~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~--~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~------ 444 (486)
+++.++..++++++.+.|+++|++++..+. ..++++|.+... + ..++.+.|.+.| +.+.+..
T Consensus 302 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~L~~~g-i~v~~g~~~~~~~ 371 (406)
T 3cai_A 302 QSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKV-------P--ADRVVQRLADNG-ILAIANTGSRVLD 371 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTB-------C--HHHHHHHHHHTT-EECEECCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCc-------C--HHHHHHHHHHCC-cEEecCChHHHHH
Confidence 888899999999999999999999887543 356788887521 1 245677777777 4444332
Q ss_pred -E---CCEeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 445 -L---SGKYILRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 445 -~---~~~~~lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
+ .+..++|+++ +..++++|+++++++|+++
T Consensus 372 ~~g~~~~~~~iRis~-~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 372 VLGVNDVGGAVTVGL-AHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp HHTTTTTTCCEEEEC-CTTCCHHHHHHHHHHHHTC
T ss_pred HcCCCCCCCeEEEEe-ecCCCHHHHHHHHHHHHHh
Confidence 1 1236899999 7888999999999999753
No 48
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.94 E-value=1.4e-25 Score=224.26 Aligned_cols=330 Identities=11% Similarity=0.091 Sum_probs=225.2
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCc
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGK 170 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 170 (486)
..+.+.+...+......|...++..++++++.+|+.+.+|.+.+ ....++|+|||+++..++.+...
T Consensus 46 ~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~-----~~~v~~~~g~~~a~~~~~~~~~~-------- 112 (388)
T 1j32_A 46 KHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYG-----ADNILVTNGGKQSIFNLMLAMIE-------- 112 (388)
T ss_dssp HHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC-----GGGEEEESHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC-----hhhEEEcCCHHHHHHHHHHHhcC--------
Confidence 34445554444333334555567899999999999999886432 12589999999999988876533
Q ss_pred cCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc-
Q 041829 171 NSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV- 249 (486)
Q Consensus 171 ~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i- 249 (486)
+++.|+++..+|+++..+++..|+ +++.+|.+++++|.+|+++|+++++++ +.+|+++.++|+||.+
T Consensus 113 ---~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~ 180 (388)
T 1j32_A 113 ---PGDEVIIPAPFWVSYPEMVKLAEG---TPVILPTTVETQFKVSPEQIRQAITPK------TKLLVFNTPSNPTGMVY 180 (388)
T ss_dssp ---TTCEEEEESSCCTHHHHHHHHTTC---EEEEECCCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCC
T ss_pred ---CCCEEEEcCCCChhHHHHHHHcCC---EEEEecCCcccCCCCCHHHHHHhcCcC------ceEEEEeCCCCCCCcCC
Confidence 567888999999999999999999 999999875434789999999998642 4578888999999999
Q ss_pred --CChHHHHHHHHHhCCEEEeeccccchhccCccchhccc---CCcCCCceeeecccccCCC-CcceEEEEeCchHHHHH
Q 041829 250 --DPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYID---GVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQS 323 (486)
Q Consensus 250 --d~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~---~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~ 323 (486)
+++++|+++|+++|+++|+|++|+.+............ ...+.|.++.++||+++.| ..+|+++.++. .. +.
T Consensus 181 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~-~~-~~ 258 (388)
T 1j32_A 181 TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVP-LV-KA 258 (388)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHH-HH-HH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCHH-HH-HH
Confidence 45999999999999999999999875432111111110 0124788999999999644 33888887543 22 22
Q ss_pred hcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--ChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Q 041829 324 LSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--GLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTP 401 (486)
Q Consensus 324 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 401 (486)
+.....+ .+.....+..+++...+ +.+.++++.++..++++++.+.|+++|++++..+
T Consensus 259 l~~~~~~--------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 318 (388)
T 1j32_A 259 ATKIQGH--------------------STSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKP 318 (388)
T ss_dssp HHHHHHT--------------------TTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCC
T ss_pred HHHHHhh--------------------cccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCC
Confidence 2110000 00011233333333333 4567888889999999999999999989887643
Q ss_pred CCceEEE-EEecCCCCCcccchHHHHHHHHHHHc-cCcEEEEee-eECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 402 RIFSLVC-FRLLPPHNDEDHGNKLNHKLLDDINS-TGKIFISHT-VLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 402 ~~~~~v~-f~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~-~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
..++++ +.+...+ . ...++.+.|.+ .| +.+.+. .+....++|+++ . ++++++++++++|+++.++
T Consensus 319 -~~~~~~~~~~~~~~-----~--~~~~~~~~l~~~~g-i~v~~g~~~~~~~~iRis~-~--~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 319 -DGAFYMFPSIAKTG-----R--SSLDFCSELLDQHQ-VATVPGAAFGADDCIRLSY-A--TDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp -CBTTEECCBCGGGT-----C--CHHHHHHHHHHHHC-EECEEGGGGTCTTBEEEEC-C--SCHHHHHHHHHHHHHHHHH
T ss_pred -CeeEEEEEecCCCC-----C--CHHHHHHHHHHhCC-EEEeChhhhCCCCcEEEEe-c--CCHHHHHHHHHHHHHHHHH
Confidence 333333 3332101 1 12467777775 57 444443 333246899998 3 5899999999999988765
Q ss_pred H
Q 041829 479 L 479 (486)
Q Consensus 479 l 479 (486)
+
T Consensus 387 ~ 387 (388)
T 1j32_A 387 I 387 (388)
T ss_dssp H
T ss_pred h
Confidence 4
No 49
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.94 E-value=1.2e-26 Score=230.36 Aligned_cols=301 Identities=13% Similarity=0.101 Sum_probs=212.9
Q ss_pred hHHHHHHHHHH-HHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHH
Q 041829 114 ATELEMIVLDW-LAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKAC 192 (486)
Q Consensus 114 ~~~le~~~~~~-la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~ 192 (486)
......++.++ +++++|.+ . .++|+|||+|+..++.++.. +++.|+++..+|+++..++
T Consensus 51 ~~~~~~~l~~~~la~~~~~~-~--------v~~~~g~t~a~~~~~~~~~~-----------~gd~vl~~~~~~~~~~~~~ 110 (371)
T 2e7j_A 51 KTPPIHDFIHNQLPKFLGCD-V--------ARVTNGAREAKFAVMHSLAK-----------KDAWVVMDENCHYSSYVAA 110 (371)
T ss_dssp --CCHHHHHHTHHHHHTTSS-E--------EEEESSHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC-E--------EEEeCChHHHHHHHHHHHhC-----------CCCEEEEccCcchHHHHHH
Confidence 34556677788 89999987 3 89999999999998877633 6778999999999999999
Q ss_pred HHhCCCCCCeEEEe--CCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeec
Q 041829 193 QIGGIHPQNFRVLK--TDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDA 270 (486)
Q Consensus 193 ~~~g~g~~~v~~v~--~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~ 270 (486)
+..|+ +++.+| .++ ++.+|+++|++++++...+ .++.+|+++.++|++|.+.|+++|.++|+++|+++|+|+
T Consensus 111 ~~~g~---~~~~v~~~~~~--~~~~d~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~ 184 (371)
T 2e7j_A 111 ERAGL---NIALVPKTDYP--DYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNG 184 (371)
T ss_dssp HHTTC---EEEEECCCCTT--TCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEEC
T ss_pred HHcCC---eEEEeecccCC--CCCcCHHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEEC
Confidence 99999 999999 764 3699999999999764321 346789999999999999999999999999999999999
Q ss_pred cccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcC-CcccccccccccCCccCCCCCcc
Q 041829 271 AYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLST-NPEFLKNKASQANMVVDYKDWQI 349 (486)
Q Consensus 271 A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~ 349 (486)
+|+.+....+ ... . +.|++++++||++++|.++|+++++++. +...+.. ...+... ...
T Consensus 185 a~~~~~~~~~-~~~----~-~~di~~~s~sK~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~ 244 (371)
T 2e7j_A 185 AYAIGRMPVS-LKE----I-GADFIVGSGHKSMAASGPIGVMGMKEEW-AEIVLRRSEKYKNKE-------------VEL 244 (371)
T ss_dssp TTTBTTBCCC-HHH----H-TCSEEEEEHHHHSSCCSSCEEEEECTTT-TTTTTCBCSSCTTSB-------------GGG
T ss_pred ccccCCCCCC-hhh----c-CCCEEEecCCcCCCCCCCcEEEEEechh-hhhhccccccCcccc-------------ccc
Confidence 9987654221 111 1 5799999999999999899999998642 1110111 1111100 000
Q ss_pred CCCC-CCC-cHHHHHHHHHhChhhHHHHHHHH--HHHHHHHHHHHhcCCCeEEecCC--CceEEEEEecCCCCCcccchH
Q 041829 350 PLGR-RFR-SLKLWMVLRLYGLENLQGYIRNH--IQLAKHFEGLVAQDLRFEVVTPR--IFSLVCFRLLPPHNDEDHGNK 423 (486)
Q Consensus 350 ~~sr-~~~-~l~~~~~l~~~g~~g~~~~~~~~--~~~a~~l~~~l~~~~~~~~~~~~--~~~~v~f~~~~~~~~~~~~~~ 423 (486)
..+. ... ...+..+++.+.. ++.++. .++++++.+.|+++ ++++..++ ..+++++++.
T Consensus 245 ~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~----------- 308 (371)
T 2e7j_A 245 LGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE----------- 308 (371)
T ss_dssp TTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH-----------
T ss_pred ccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC-----------
Confidence 0111 111 1223344443321 556677 88999999999998 89987653 4667777763
Q ss_pred HHHHHHHHHHccCcEEEEeeeE-C---C--EeEEE-EEecCCC-CCHHHHHHHHHHHHHHHHH
Q 041829 424 LNHKLLDDINSTGKIFISHTVL-S---G--KYILR-FAVGAPL-TEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 424 ~~~~l~~~l~~~g~~~~~~~~~-~---~--~~~lR-i~~~~~~-~t~~di~~~~~~l~~~~~~ 478 (486)
...++.+.|.+.|.. +.+... . + ..++| +++ +.. ++++|+++++++|+++.++
T Consensus 309 ~~~~~~~~l~~~gi~-~~~~~~~~~~~g~~~~~iRii~~-~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 309 VLYEISKKAKGGRFF-LYRELKSRKIHGIKPGLTRYFKL-STYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp HHHHHHHHSSSGGGH-HHHHHHHTTEECSCTTCCSEEEE-ECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCEE-EEeccccccccCCCCCceEEEEe-eccCCCHHHHHHHHHHHHHHHHh
Confidence 124566777766643 332111 0 2 35899 999 555 8999999999999988764
No 50
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.93 E-value=7.2e-25 Score=219.19 Aligned_cols=325 Identities=10% Similarity=0.070 Sum_probs=222.7
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCC--CCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHh
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKL--PEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRV 168 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 168 (486)
..+.+.+...+......|.. ...++++++.+++++++|. +.+ ..++|+|||+++..++.+...
T Consensus 48 ~~v~~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~-------~v~~~~g~~~a~~~~~~~~~~------ 112 (391)
T 4dq6_A 48 PCIIDSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIKSE-------WLIYSPGVIPAISLLINELTK------ 112 (391)
T ss_dssp HHHHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCCGG-------GEEEESCHHHHHHHHHHHHSC------
T ss_pred HHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCcHH-------HeEEcCChHHHHHHHHHHhCC------
Confidence 44445555555543334433 4588999999999999994 443 589999999999888876533
Q ss_pred CccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCC--CCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccc
Q 041829 169 GKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTD--SSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSS 246 (486)
Q Consensus 169 ~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~--~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~t 246 (486)
+++.|+++..+|.++..+++..|. +++.+|++ .+++|.+|+++|++++++ +.+|+++.++|++
T Consensus 113 -----~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~v~i~~p~npt 177 (391)
T 4dq6_A 113 -----ANDKIMIQEPVYSPFNSVVKNNNR---ELIISPLQKLENGNYIMDYEDIENKIKD-------VKLFILCNPHNPV 177 (391)
T ss_dssp -----TTCEEEECSSCCTHHHHHHHHTTC---EEEECCCEECTTSCEECCHHHHHHHCTT-------EEEEEEESSBTTT
T ss_pred -----CCCEEEEcCCCCHHHHHHHHHcCC---eEEeeeeeecCCCceEeeHHHHHHHhhc-------CCEEEEECCCCCC
Confidence 567899999999999999999999 99999987 445578999999999865 3578888999999
Q ss_pred ccc---CChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCC----cCCCceeeecccccC-CCCcceEEEEeCch
Q 041829 247 TAV---DPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGV----EEADSFNMNAHKWFL-TNFDCSALWVKDRN 318 (486)
Q Consensus 247 G~i---d~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~----~~aDs~~~~~hK~l~-~p~~~g~l~~r~~~ 318 (486)
|.+ +++++|+++|++||+++++|++|+.+......... +..+ .....++.++||+++ ....+|+++.+++.
T Consensus 178 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 256 (391)
T 4dq6_A 178 GRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIP-MASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEK 256 (391)
T ss_dssp TBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCC-GGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHH
T ss_pred CcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccC-HHHcCccccCcEEEEEechhhccCcccceEEEEeCCHH
Confidence 999 78999999999999999999999875432111111 1111 122366788999996 44568888887644
Q ss_pred HHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhc-CCCeE
Q 041829 319 TLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQ-DLRFE 397 (486)
Q Consensus 319 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~-~~~~~ 397 (486)
...........+. ...........+..+++. +.+.++++.++..++++++.+.|++ +|+++
T Consensus 257 ~~~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 318 (391)
T 4dq6_A 257 DYKLLDDAFTRID-----------------IKRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLK 318 (391)
T ss_dssp HHHHHHHHHHHTT-----------------CCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHHHhhc-----------------CCCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence 3322111100000 000001111233333433 4566788888999999999999988 78999
Q ss_pred EecCCCceEEE-EEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEee-eE--CCEeEEEEEecCCCCCHHHHHHHHHHH
Q 041829 398 VVTPRIFSLVC-FRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHT-VL--SGKYILRFAVGAPLTEWRHVNAAWEVM 472 (486)
Q Consensus 398 ~~~~~~~~~v~-f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~~--~~~~~lRi~~~~~~~t~~di~~~~~~l 472 (486)
+..+ ..+++. +.+...+ . ...++.+.|.++ | +.+.+. .+ .+..++|+++ . ++++++++++++|
T Consensus 319 ~~~~-~~~~~~~~~~~~~~-----~--~~~~~~~~l~~~~g-i~v~~g~~~~~~~~~~iRis~-~--~~~~~i~~~l~~l 386 (391)
T 4dq6_A 319 VRKP-EGTYLLWVDFSALG-----L--SDEELESILVQKGK-VALNQGNSFGIGGSGYQRINL-A--CPRSMLEEALIRI 386 (391)
T ss_dssp ECCC-SBSSEEEEECGGGC-----C--CHHHHHHHHHHTTC-EECEEGGGGCTTCTTEEEEEC-C--SCHHHHHHHHHHH
T ss_pred ecCC-CccEEEEEEhhhcC-----C--CHHHHHHHHHHhCC-EEeeCchhhCCCCCCeEEEEE-c--CCHHHHHHHHHHH
Confidence 8744 444443 5654211 1 125677888887 7 555443 22 2346899999 3 5899999999999
Q ss_pred HHHH
Q 041829 473 QDKA 476 (486)
Q Consensus 473 ~~~~ 476 (486)
+++.
T Consensus 387 ~~~l 390 (391)
T 4dq6_A 387 KNAI 390 (391)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 51
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.93 E-value=3.9e-24 Score=213.88 Aligned_cols=332 Identities=14% Similarity=0.074 Sum_probs=218.0
Q ss_pred HHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCcc
Q 041829 92 FLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKN 171 (486)
Q Consensus 92 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 171 (486)
.+.+.+...+......|..++...+++++ +++++|.+. .+++++||+|+..++.+.+..
T Consensus 18 ~~~~a~~~~l~~~~~~~~~~~~~~~l~~~----la~~~~~~~---------~i~~~sGt~al~~~l~~l~~~-------- 76 (388)
T 1b9h_A 18 AERNGLVRALEQGQWWRMGGDEVNSFERE----FAAHHGAAH---------ALAVTNGTHALELALQVMGVG-------- 76 (388)
T ss_dssp HHHHHHHHHHHTSCCBTTTCSHHHHHHHH----HHHHTTCSE---------EEEESCHHHHHHHHHHHTTCC--------
T ss_pred HHHHHHHHHHHcCCeeecCCHHHHHHHHH----HHHHhCCCe---------EEEeCCHHHHHHHHHHHcCCC--------
Confidence 34444444444322345556777777777 788888763 455556699998888765211
Q ss_pred CCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC
Q 041829 172 SLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP 251 (486)
Q Consensus 172 ~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~ 251 (486)
+++.|+++..+|.++..+++..|+ +++.+|++++ +|.+|+++|+++++++ +.+|+ +++++|.+.|
T Consensus 77 --~gd~Vi~~~~~~~~~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~i~~~------~~~v~---~~n~tG~~~~ 141 (388)
T 1b9h_A 77 --PGTEVIVPAFTFISSSQAAQRLGA---VTVPVDVDAA-TYNLDPEAVAAAVTPR------TKVIM---PVHMAGLMAD 141 (388)
T ss_dssp --TTCEEEEESSSCTHHHHHHHHTTC---EEEEECBCTT-TCCBCHHHHHHHCCTT------EEEEC---CBCGGGCCCC
T ss_pred --CcCEEEECCCccHHHHHHHHHcCC---EEEEEecCCC-cCCCCHHHHHHhcCcC------ceEEE---EeCCccCcCC
Confidence 567899999999999999999999 9999999865 3799999999998643 33444 7889999999
Q ss_pred hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchH--HHHHhcCCcc
Q 041829 252 LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNT--LIQSLSTNPE 329 (486)
Q Consensus 252 l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~--~~~~~~~~~~ 329 (486)
+++|.++|+++|+++|+|++|+.+...... . +..+..++..+++.||++.++ .+|+++.++... +.........
T Consensus 142 l~~i~~la~~~~~~li~D~a~~~g~~~~~~--~-~~~~~~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~~~ 217 (388)
T 1b9h_A 142 MDALAKISADTGVPLLQDAAHAHGARWQGK--R-VGELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHSC 217 (388)
T ss_dssp HHHHHHHHHHHTCCBCEECTTCTTCEETTE--E-GGGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTBT
T ss_pred HHHHHHHHHHcCCEEEEecchhcCCccCCe--e-cccccceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHHhC
Confidence 999999999999999999999854433111 1 111223677788889999776 468887776533 3322111100
Q ss_pred cccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-----C-C
Q 041829 330 FLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTP-----R-I 403 (486)
Q Consensus 330 yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~-----~-~ 403 (486)
... .....+.......+.+...+.+++.+.. .+.+++.+++..++++++.+.|+++|++++..+ + .
T Consensus 218 ~~~------~~~~~~~~~~~g~~~~~~~~~~a~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 289 (388)
T 1b9h_A 218 GRP------RDDRRYFHKIAGSNMRLNEFSASVLRAQ--LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNS 289 (388)
T ss_dssp TCC------TTCSSCCCCSCCCBCBCBHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCC
T ss_pred CCC------ccCccceeecccccCCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccc
Confidence 000 0000000001111112333444444332 456778888889999999999999999988752 2 2
Q ss_pred ceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeee-EC----------------------------CEeEEEEE
Q 041829 404 FSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTV-LS----------------------------GKYILRFA 454 (486)
Q Consensus 404 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~----------------------------~~~~lRi~ 454 (486)
.+++++++... ......++.+.|.++|...-.... .. ....+|++
T Consensus 290 ~~~~~~~~~~~------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 363 (388)
T 1b9h_A 290 HYMAMFRIPGL------TEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLH 363 (388)
T ss_dssp CSEEEEECTTC------CHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEE
T ss_pred eEEEEEEeCCc------CcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEec
Confidence 45777777531 012335678888888854322211 00 01379999
Q ss_pred ecCCCC-CHHHHHHHHHHHHHHHHH
Q 041829 455 VGAPLT-EWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 455 ~~~~~~-t~~di~~~~~~l~~~~~~ 478 (486)
+ ++.+ |++||++++++|+++.++
T Consensus 364 ~-~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 364 H-RVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp G-GGGGSCHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCCCHHHHHHHHHHHHHHHhh
Confidence 9 8888 999999999999987653
No 52
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.93 E-value=5e-25 Score=221.75 Aligned_cols=328 Identities=10% Similarity=0.050 Sum_probs=222.7
Q ss_pred HHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCcc
Q 041829 92 FLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKN 171 (486)
Q Consensus 92 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 171 (486)
.+.+.+...+......|...++..++++++.+|+.+.+|++.+ ....++|+|||+|+..++.++..
T Consensus 58 ~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~-----~~~v~~t~g~~~al~~~~~~l~~--------- 123 (406)
T 1xi9_A 58 HMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDIT-----PDDVRVTAAVTEALQLIFGALLD--------- 123 (406)
T ss_dssp HHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC-----GGGEEEESHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCC-----HHHEEEcCChHHHHHHHHHHhCC---------
Confidence 3444444444332234555556789999999999998876542 12589999999999888876532
Q ss_pred CCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC
Q 041829 172 SLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP 251 (486)
Q Consensus 172 ~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~ 251 (486)
+++.|+++..+|.++..+++..|+ +++.+|++++++|.+|+++|++++++. +.+|+++.++|++|.+-|
T Consensus 124 --~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~ 192 (406)
T 1xi9_A 124 --PGDEILVPGPSYPPYTGLVKFYGG---KPVEYRTIEEEDWQPDIDDIRKKITDR------TKAIAVINPNNPTGALYD 192 (406)
T ss_dssp --TTCEEEEEESCCHHHHHHHHHTTC---EEEEEEEEGGGTSEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCC
T ss_pred --CCCEEEEcCCCCccHHHHHHHcCC---EEEEeecCCCcCCcCCHHHHHHhhCcC------ceEEEEECCCCCCCCCcC
Confidence 567889999999999999999999 999999875334789999999988642 457788899999999865
Q ss_pred ---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCC-cCC-CceeeecccccCCC-CcceEEEE-eCc----hHH
Q 041829 252 ---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGV-EEA-DSFNMNAHKWFLTN-FDCSALWV-KDR----NTL 320 (486)
Q Consensus 252 ---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~-~~a-Ds~~~~~hK~l~~p-~~~g~l~~-r~~----~~~ 320 (486)
+++|+++|+++|+++++|++|+++.. ..... .+..+ ... |.++.++||+++.| ..+|++++ .++ +..
T Consensus 193 ~~~l~~i~~~a~~~~~~li~De~~~~~~~-~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~ 270 (406)
T 1xi9_A 193 KKTLEEILNIAGEYEIPVISDEIYDLMTY-EGEHI-SPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVR 270 (406)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTTTCBS-SSCCC-CHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCC-CHHHcCCCceEEEEeccccccCCCccEEEEEEEecCchhHHHHH
Confidence 99999999999999999999987553 21111 11111 234 67788999999743 34788873 333 333
Q ss_pred HHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--ChhhHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q 041829 321 IQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--GLENLQGYIRNHIQLAKHFEGLVAQDLRFEV 398 (486)
Q Consensus 321 ~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~ 398 (486)
. .+.....+. .+ ...+..+++...+ +.+.++++.++..++++++.+.|+++|++++
T Consensus 271 ~-~l~~~~~~~-------------------~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 328 (406)
T 1xi9_A 271 E-AIDRLARIR-------------------LC--PNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGIST 328 (406)
T ss_dssp H-HHHHHHHHT-------------------CC--SCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred H-HHHHHHHhh-------------------cC--CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCee
Confidence 2 221110100 00 1122233333322 4556888889999999999999999989987
Q ss_pred ecCCCceEEEE-EecCC-CCCcccchHHHHHHHHHHH-ccCcEEEEee-eEC--CEeEEEEEecCCCCCHHHHHHHHHHH
Q 041829 399 VTPRIFSLVCF-RLLPP-HNDEDHGNKLNHKLLDDIN-STGKIFISHT-VLS--GKYILRFAVGAPLTEWRHVNAAWEVM 472 (486)
Q Consensus 399 ~~~~~~~~v~f-~~~~~-~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~-~~~--~~~~lRi~~~~~~~t~~di~~~~~~l 472 (486)
.. +..++++| .+... + .+ ..++.+.|. +.| +.+.+. .+. +..++|+++ . +++++|++++++|
T Consensus 329 ~~-~~~~~~~~~~~~~~~~-----~~--~~~l~~~l~~~~g-i~v~~g~~f~~~~~~~lRis~-~--~~~~~i~~~~~~l 396 (406)
T 1xi9_A 329 TK-PQGAFYIFPKIEVGPW-----KN--DKEFVLDVLHNAH-VLFVHGSGFGEYGAGHFRAVF-L--PPIEILEEAMDRF 396 (406)
T ss_dssp CC-CCBSSEECCEECSCSC-----SS--HHHHHHHHHHHHC-EECEEGGGGCGGGTTBEEEEC-C--SCHHHHHHHHHHH
T ss_pred ec-CCeeEEEEEecCccCC-----CC--HHHHHHHHHHhCC-EEEeCchhcCCCCCCEEEEEe-c--CCHHHHHHHHHHH
Confidence 64 44444444 55320 1 11 246777776 667 444433 222 246899999 4 7999999999999
Q ss_pred HHHHHHHH
Q 041829 473 QDKASALL 480 (486)
Q Consensus 473 ~~~~~~l~ 480 (486)
.++.+++.
T Consensus 397 ~~~l~~~~ 404 (406)
T 1xi9_A 397 EKFMKERL 404 (406)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99887654
No 53
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.93 E-value=1e-24 Score=216.88 Aligned_cols=332 Identities=11% Similarity=0.063 Sum_probs=213.8
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCc
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGK 170 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 170 (486)
..+.+.+...+.... +..++...++++. +++++|.+. .++|+|||+|+..++.+++.. .
T Consensus 13 ~~v~~a~~~~~~~~~--~~~~~~~~~l~~~----la~~~~~~~---------v~~~~ggt~al~~~~~~~~~~-~----- 71 (375)
T 2fnu_A 13 KEDKKAVLEVLNSKQ--LTQGKRSLLFEEA----LCEFLGVKH---------ALVFNSATSALLTLYRNFSEF-S----- 71 (375)
T ss_dssp HHHHHHHHHHHTSSC--CSSSHHHHHHHHH----HHHHHTCSE---------EEEESCHHHHHHHHHHHSSCC-C-----
T ss_pred HHHHHHHHHHHHcCc--ccCChHHHHHHHH----HHHHhCCCe---------EEEeCCHHHHHHHHHHHhccc-C-----
Confidence 334455555554321 2235555555555 888888762 899999999999888765210 0
Q ss_pred cCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC
Q 041829 171 NSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD 250 (486)
Q Consensus 171 ~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id 250 (486)
.+++.|+++..+|+++..+++..|+ +++.+|+++++ .+|+++|+++++++ +.+|+++.+ +|.+.
T Consensus 72 --~~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~--~~d~~~l~~~i~~~------~~~v~~~~~---tG~~~ 135 (375)
T 2fnu_A 72 --ADRNEIITTPISFVATANMLLESGY---TPVFAGIKNDG--NIDELALEKLINER------TKAIVSVDY---AGKSV 135 (375)
T ss_dssp --TTSCEEEECSSSCTHHHHHHHHTTC---EEEECCBCTTS--SBCGGGSGGGCCTT------EEEEEEECG---GGCCC
T ss_pred --CCCCEEEECCCccHhHHHHHHHCCC---EEEEeccCCCC--CCCHHHHHhhcCcC------ceEEEEeCC---cCCcc
Confidence 0567899999999999999999999 99999998653 89999999888643 345666654 89999
Q ss_pred ChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEe-CchHHHHHhcCCcc
Q 041829 251 PLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVK-DRNTLIQSLSTNPE 329 (486)
Q Consensus 251 ~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r-~~~~~~~~~~~~~~ 329 (486)
|+++|.++|+++|+++|+|++|+.+...... .+.....+++.++++||+++ | |+|+++++ ++....+......
T Consensus 136 ~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~---~~~~~~~i~~~s~s~~K~~~-~-g~g~~~~~~~~~~~~~~~~~~~- 209 (375)
T 2fnu_A 136 EVESVQKLCKKHSLSFLSDSSHALGSEYQNK---KVGGFALASVFSFHAIKPIT-T-AEGGAVVTNDSELHEKMKLFRS- 209 (375)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSC-C-SSCEEEEESCHHHHHHHHHHTB-
T ss_pred CHHHHHHHHHHcCCEEEEECccccCCeECCe---eccccCCeEEEeCCCCCCcc-c-cCceEEEeCCHHHHHHHHHHHh-
Confidence 9999999999999999999999865433111 11112235666788889984 4 78888885 3443222111110
Q ss_pred cccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----Cc
Q 041829 330 FLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPR-----IF 404 (486)
Q Consensus 330 yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~-----~~ 404 (486)
....+. ..+.+. ....+.++....+.+++.....++++++.++..++++++.+.|+++|++++..++ ..
T Consensus 210 ---~~~~~~-~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 283 (375)
T 2fnu_A 210 ---HGMLKK-DFFEGE--VKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSN 283 (375)
T ss_dssp ---TTEEES-SSSCEE--ESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCC
T ss_pred ---cCCccc-cccccc--cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcce
Confidence 000000 000000 0011111222233333333345678889999999999999999999999886541 22
Q ss_pred eEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEee--e------EC--------------CEeEEEEEecCCCCCH
Q 041829 405 SLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHT--V------LS--------------GKYILRFAVGAPLTEW 462 (486)
Q Consensus 405 ~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--~------~~--------------~~~~lRi~~~~~~~t~ 462 (486)
.++.+.+...+ .. ...++.+.|.+.| +.+... . +. +..++|+++ +..+|+
T Consensus 284 ~~~~~~~~~~~-----~~-~~~~l~~~L~~~g-i~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~-~~~~t~ 355 (375)
T 2fnu_A 284 HLYPILMHQKF-----FT-CKKLILESLHKRG-ILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPC-HANLNL 355 (375)
T ss_dssp SCEEEEECGGG-----GG-GHHHHHHHHHHTT-EECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECC-CTTCCH
T ss_pred EEEEEEeCccc-----cc-hHHHHHHHHHHCC-CCccccccccccchhhhcCCCccCChHHHHHHhCEEEecC-CCCCCH
Confidence 34455554210 00 2356777787777 444411 0 00 125899998 888999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041829 463 RHVNAAWEVMQDKASAL 479 (486)
Q Consensus 463 ~di~~~~~~l~~~~~~l 479 (486)
+|+++++++|+++.+++
T Consensus 356 ~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 356 ESVQNIAHSVLKTFESF 372 (375)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999987654
No 54
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.93 E-value=8.1e-26 Score=222.78 Aligned_cols=340 Identities=13% Similarity=0.041 Sum_probs=222.0
Q ss_pred CCCCCHHHHHHHHHHHhcC---cCccc---cccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEE-cCchhHHHHHH
Q 041829 84 PSNSSVAGFLGEMLSAGLN---IVGFS---WITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVI-QGTASEAVLVV 156 (486)
Q Consensus 84 ~~~~~~~~~~~~~l~~~~n---~~~~~---~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~-t~ggt~a~~~a 156 (486)
.+.+.++.++..+.....+ ++... ...++.+.++-+++++.+++++|.++++ ..+| |+|||+++.++
T Consensus 20 t~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~------evif~t~~~T~a~n~a 93 (377)
T 3e77_A 20 FQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNY------KVIFLQGGGCGQFSAV 93 (377)
T ss_dssp CSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTE------EEEEESSHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCC------eEEEEcCchHHHHHHH
Confidence 3445555555554443322 21221 2346778888999999999999997531 4777 68999998887
Q ss_pred HHHHHHHHHHHhCccCCCCeEEEecCCCchhH--HHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCcc
Q 041829 157 LLAARDKALKRVGKNSLEKLVVYASDQTHSAL--QKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIP 234 (486)
Q Consensus 157 l~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~--~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p 234 (486)
+...... . +++.+++....|++. .+.++..|. .++.+|++.+ +..+++.++.+++++ +
T Consensus 94 ~~~l~~~---~------~Gd~v~~~~~g~~~~~~~~~a~~~G~---~~~~~~~~~~--~~~~~~~~~~~i~~~------t 153 (377)
T 3e77_A 94 PLNLIGL---K------AGRCADYVVTGAWSAKAAEEAKKFGT---INIVHPKLGS--YTKIPDPSTWNLNPD------A 153 (377)
T ss_dssp HHHHGGG---S------TTCEEEECCCSHHHHHHHHHHTTTSE---EEECSCCCSS--SCSCCCGGGCCCCTT------C
T ss_pred HHhccCC---C------CCCeEEEEECCHHHHHHHHHHHHhCC---ceEEeccCCC--cCCCCChHHhccCCC------c
Confidence 7644321 0 245666666677663 234445566 7777787643 467777776655443 3
Q ss_pred EEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEE
Q 041829 235 FFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWV 314 (486)
Q Consensus 235 ~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~ 314 (486)
.+|.+++.+|.+|.+.|+ +|+++|+++|||++++.+....+- +..|.+++++|||+ +|.|.|++++
T Consensus 154 ~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~--------~~~~~~~~s~~K~~-gp~G~g~l~~ 219 (377)
T 3e77_A 154 SYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDV--------SKFGVIFAGAQKNV-GSAGVTVVIV 219 (377)
T ss_dssp SCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCG--------GGCSEEEEEGGGTT-SCTTCEEEEE
T ss_pred cEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCch--------hhcCEEEEeccccc-CCCccEEEEE
Confidence 478889999999999999 588999999999999887765542 13456899999999 5999999999
Q ss_pred eCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCC-CCcHHHHHHHHHhChh-hHHHHHHHHHHHHHHHHHHHhc
Q 041829 315 KDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRR-FRSLKLWMVLRLYGLE-NLQGYIRNHIQLAKHFEGLVAQ 392 (486)
Q Consensus 315 r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~l~~ 392 (486)
|++. +.+.-...+.|+.-..... .....++.. +....+-.+++.+-.+ |++++.++..++++++++.|++
T Consensus 220 ~~~~-l~~~~~~~p~~~~~~~~~~-------~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~ 291 (377)
T 3e77_A 220 RDDL-LGFALRECPSVLEYKVQAG-------NSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDN 291 (377)
T ss_dssp ETTS-CSCCCTTSCGGGCHHHHHT-------TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHH-HhhccCCCCchhhHHHHhh-------cCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh
Confidence 8753 1111011122321000000 000001111 1234566677777677 8999999999999999999999
Q ss_pred CCCeEEec-CC--Cce-EEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHH
Q 041829 393 DLRFEVVT-PR--IFS-LVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAA 468 (486)
Q Consensus 393 ~~~~~~~~-~~--~~~-~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~ 468 (486)
+|++.+.. ++ ..+ +++|.+..... ..++...+.+.+.+.|.+...+. ...+.+|+|+ ..++|++|||++
T Consensus 292 ~~g~~~~~~~~~~rs~~ivsf~~~~~~~----~~~~~~~~l~~l~~~Gi~~~~g~--~~~g~iRiS~-~~~~t~edId~l 364 (377)
T 3e77_A 292 SQGFYVCPVEPQNRSKMNIPFRIGNAKG----DDALEKRFLDKALELNMLSLKGH--RSVGGIRASL-YNAVTIEDVQKL 364 (377)
T ss_dssp STTSEECCSCGGGBCSSEEEEEESSTTC----CHHHHHHHHHHHHHTTEESCBCC--TTTCSEEEEC-CTTSCHHHHHHH
T ss_pred cCCceecCCCHHHcCCcEEEEEcCCCCC----chhHHHHHHHHHHHCCcEEeCCC--CcCCEEEEEC-CCCCCHHHHHHH
Confidence 99998643 22 233 68999864220 02333456777777774322221 2224699999 789999999999
Q ss_pred HHHHHHHHHH
Q 041829 469 WEVMQDKASA 478 (486)
Q Consensus 469 ~~~l~~~~~~ 478 (486)
+++|+++.++
T Consensus 365 ~~al~~~~~~ 374 (377)
T 3e77_A 365 AAFMKKFLEM 374 (377)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 55
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.93 E-value=1.1e-24 Score=220.43 Aligned_cols=331 Identities=12% Similarity=0.065 Sum_probs=224.2
Q ss_pred HHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCcc
Q 041829 92 FLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKN 171 (486)
Q Consensus 92 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 171 (486)
.+.+.+...+......|... ..++++++.+|+++.+|++.. ....++++||++|+..++.++..
T Consensus 78 ~v~~a~~~~~~~~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~-----~~~v~~~~g~~ea~~~a~~~~~~--------- 141 (421)
T 3l8a_A 78 EIKEAIINYGREHIFGYNYF--NDDLYQAVIDWERKEHDYAVV-----KEDILFIDGVVPAISIALQAFSE--------- 141 (421)
T ss_dssp HHHHHHHHHHHHCCSSCBCC--CHHHHHHHHHHHHHHHCCCCC-----GGGEEEESCHHHHHHHHHHHHSC---------
T ss_pred HHHHHHHHHHhcCCcCCCCC--CHHHHHHHHHHHHHHhCCCCC-----HHHEEEcCCHHHHHHHHHHHhcC---------
Confidence 34444444443333333332 378999999999999995432 12589999999999998887543
Q ss_pred CCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCC-CCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc-
Q 041829 172 SLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTD-SSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV- 249 (486)
Q Consensus 172 ~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~-~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i- 249 (486)
+++.|++....|.++..+++..|. +++.+|++ .+++|.+|+++|++++++. .+.+|+++.++|++|.+
T Consensus 142 --~gd~Vi~~~~~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~le~~i~~~-----~~~~vil~~p~nptG~~~ 211 (421)
T 3l8a_A 142 --KGDAVLINSPVYYPFARTIRLNDH---RLVENSLQIINGRFEIDFEQLEKDIIDN-----NVKIYLLCSPHNPGGRVW 211 (421)
T ss_dssp --TEEEEEEEESCCHHHHHHHHHTTE---EEEEEECEEETTEEECCHHHHHHHHHHT-----TEEEEEEESSBTTTTBCC
T ss_pred --CCCEEEECCCCcHHHHHHHHHCCC---EEEeccccccCCCeeeCHHHHHHHhhcc-----CCeEEEECCCCCCCCCcC
Confidence 667888999999999999999999 99999987 4456789999999999742 24678889999999999
Q ss_pred --CChHHHHHHHHHhCCEEEeeccccchhccCccchhccc---CCcCCCceeeecccccC-CCCcceEEEEeCchHHHHH
Q 041829 250 --DPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYID---GVEEADSFNMNAHKWFL-TNFDCSALWVKDRNTLIQS 323 (486)
Q Consensus 250 --d~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~---~~~~aDs~~~~~hK~l~-~p~~~g~l~~r~~~~~~~~ 323 (486)
+++++|+++|++||+++|+|++|+++............ .....+.++.+++|+++ ....+|+++++++.... .
T Consensus 212 ~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~-~ 290 (421)
T 3l8a_A 212 DNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRR-K 290 (421)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHH-H
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHH-H
Confidence 78999999999999999999999875432211111111 11234467888999997 44567998888655332 2
Q ss_pred hcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC
Q 041829 324 LSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRI 403 (486)
Q Consensus 324 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~ 403 (486)
+....... +...+..+...++.++++. +.+.++++.++..++++++.+.|+++|+++++.+..
T Consensus 291 ~~~~~~~~----------------~~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~ 353 (421)
T 3l8a_A 291 FQYRQLAN----------------NQHEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEG 353 (421)
T ss_dssp HHHHHHHT----------------TCSCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSB
T ss_pred HHHHHHhc----------------ccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCe
Confidence 21100000 0001111122233444443 567788899999999999999999888999875433
Q ss_pred ceEEEEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEeee-E--CCEeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041829 404 FSLVCFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHTV-L--SGKYILRFAVGAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 404 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~-~--~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 477 (486)
..++.+.+...+. ...++.+.|.++ | +.+.+.. + .+..++|+++ . +++++|++++++|+++.+
T Consensus 354 ~~~~~v~~~~~~~-------~~~~l~~~l~~~~g-i~v~~g~~f~~~~~~~iRi~~-~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 354 TYLVWLDFSAYAI-------AQPQLSEKLQNEAK-VVLNDGAHFGKEGKYFARLNV-A--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp SSEEEEECGGGTC-------CTTHHHHHHHHTTC-EECEEGGGGCGGGTTEEEEEC-C--SCHHHHHHHHHHHHHHC-
T ss_pred eEEEEEeccccCC-------CHHHHHHHHHHhCC-EEEECchhhCCCCCCEEEEEe-c--CCHHHHHHHHHHHHHHHh
Confidence 3333356543110 113567777655 6 5555432 2 2347999998 3 589999999999988754
No 56
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.93 E-value=4e-24 Score=214.74 Aligned_cols=299 Identities=11% Similarity=0.066 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHh
Q 041829 116 ELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIG 195 (486)
Q Consensus 116 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 195 (486)
....++.+.+++++|.+ + .+++++||+++..++.+... +++.|+++...|.++..+++..
T Consensus 90 ~~~~~l~~~la~~~g~~-~--------~i~~~sGs~a~~~~~~~~~~-----------~gd~v~~~~~~~~~~~~~~~~~ 149 (401)
T 1fc4_A 90 DSHKELEQKLAAFLGME-D--------AILYSSCFDANGGLFETLLG-----------AEDAIISDALNHASIIDGVRLC 149 (401)
T ss_dssp HHHHHHHHHHHHHHTCS-E--------EEEESCHHHHHHTTHHHHCC-----------TTCEEEEETTCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCC-c--------EEEeCChHHHHHHHHHHHcC-----------CCCEEEEcchhHHHHHHHHHHc
Confidence 34444555588888887 3 46677789998887765432 5678889999999999999988
Q ss_pred CCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeecccc-c
Q 041829 196 GIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYA-G 274 (486)
Q Consensus 196 g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g-~ 274 (486)
|. +++.+| .+|+++|++++++....+.++.+|+++.++|++|.+.|+++|.++|+++|+++|+|++|+ +
T Consensus 150 g~---~~~~~~-------~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g 219 (401)
T 1fc4_A 150 KA---KRYRYA-------NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVG 219 (401)
T ss_dssp CS---EEEEEC-------TTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTT
T ss_pred CC---ceEEEC-------CCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECccccc
Confidence 98 887776 358999999998754433346789999999999999999999999999999999999996 4
Q ss_pred hhccCccchhcccCC-cCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCC
Q 041829 275 SACICPEYRQYIDGV-EEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGR 353 (486)
Q Consensus 275 ~~~~~~~~~~~~~~~-~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr 353 (486)
+............++ .+.|+++.++||+++++.+ |+++.+ ++.+........+|... .
T Consensus 220 ~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~g-G~~~~~-~~~~~~l~~~~~~~~~~-----------------~-- 278 (401)
T 1fc4_A 220 FVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG-GYTAAR-KEVVEWLRQRSRPYLFS-----------------N-- 278 (401)
T ss_dssp TSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC-EEEEEC-HHHHHHHHHHCHHHHHS-----------------C--
T ss_pred ccCCCCCccHHHcCCCcCCcEEEecchhhccCCCC-EEEEcC-HHHHHHHHHhCcCceeC-----------------C--
Confidence 432111100111122 2579999999999966665 887774 44333222212122110 0
Q ss_pred CCCcHHH---HHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHH
Q 041829 354 RFRSLKL---WMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLD 430 (486)
Q Consensus 354 ~~~~l~~---~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~ 430 (486)
....+.. ..+++.+. ..+++.++..++++++.+.|+++ ++++. ++..+++++.+.. .....++.+
T Consensus 279 ~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~--------~~~~~~l~~ 346 (401)
T 1fc4_A 279 SLAPAIVAASIKVLEMVE--AGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLGD--------AVVAQKFAR 346 (401)
T ss_dssp CCCHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEEC--------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEEEEEcCC--------hHHHHHHHH
Confidence 1122233 33343331 13677888899999999999998 78776 5566777787742 223466788
Q ss_pred HHHccCcEEEEeeeE----CCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 431 DINSTGKIFISHTVL----SGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 431 ~l~~~g~~~~~~~~~----~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
.|.++| +.+.+... .+..++|+++ +..++++|+++++++|+++.+++
T Consensus 347 ~l~~~g-i~v~~~~~~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 347 ELQKEG-IYVTGFFYPVVPKGQARIRTQM-SAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp HHHHTT-EECCEECTTSSCTTCEEEEEEC-CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCC-cEEeeecCCCCCCCCceEEEEe-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 888887 55544322 2346899999 77789999999999999987754
No 57
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.93 E-value=8.7e-25 Score=220.25 Aligned_cols=326 Identities=11% Similarity=0.057 Sum_probs=227.3
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCc
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGK 170 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 170 (486)
..+.+.+ ..+......|...++..++++++.+|+.+.+|.+.+ ....++|+|||+|+..++.+...
T Consensus 59 ~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~-----~~~v~~~~g~t~a~~~~~~~~~~-------- 124 (409)
T 2gb3_A 59 EVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVK-----PENVLVTNGGSEAILFSFAVIAN-------- 124 (409)
T ss_dssp THHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCC-----GGGEEEESHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-----HHHEEEeCCHHHHHHHHHHHhCC--------
Confidence 3445555 556544345555566889999999999998886432 12589999999999988876532
Q ss_pred cCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC
Q 041829 171 NSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD 250 (486)
Q Consensus 171 ~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id 250 (486)
+++.|+++..+|.++..+++..|. +++.+|.++++++.+ +++|++++++. +.+|+++.++|++|.+-
T Consensus 125 ---~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~-~~~l~~~l~~~------~~~v~~~~p~nptG~~~ 191 (409)
T 2gb3_A 125 ---PGDEILVLEPFYANYNAFAKIAGV---KLIPVTRRMEEGFAI-PQNLESFINER------TKGIVLSNPCNPTGVVY 191 (409)
T ss_dssp ---TTCEEEEEESCCTHHHHHHHHHTC---EEEEEECCGGGTSCC-CTTGGGGCCTT------EEEEEEESSCTTTCCCC
T ss_pred ---CCCEEEEcCCCchhHHHHHHHcCC---EEEEeccCCCCCCcc-HHHHHHhhCcC------CeEEEECCCCCCCCCCc
Confidence 567889999999999999999999 999999985334566 88898887542 56788889999999984
Q ss_pred ---ChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcC
Q 041829 251 ---PLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLST 326 (486)
Q Consensus 251 ---~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~ 326 (486)
++++|+++|+++|+++++|++|+++.... .....+.++...|+++.++||+++.| ..+|+++.++++.... +..
T Consensus 192 ~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~-l~~ 269 (409)
T 2gb3_A 192 GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISH-AMK 269 (409)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEECcccccccCC-CCCCccccCCCCEEEEecchhccCCccceEEEEEECcHHHHHH-HHH
Confidence 58999999999999999999998754321 11121333446789999999999744 3488888877333322 211
Q ss_pred CcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--ChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCc
Q 041829 327 NPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--GLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIF 404 (486)
Q Consensus 327 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~ 404 (486)
...+. + ....+..+++...+ +.++++++.++..++++++.+.|+++ +++++..+..
T Consensus 270 ~~~~~----------------~-----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 327 (409)
T 2gb3_A 270 LAQGR----------------L-----APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSG 327 (409)
T ss_dssp HHHHS----------------C-----CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSB
T ss_pred HHhcc----------------C-----CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCe
Confidence 00000 0 11223333333333 56778888899999999999999998 8887223444
Q ss_pred eEE-EEEecCCCCCcccchHHHHHHHHHHHcc------CcEEEEee-eE-----CCEeEEEEEecCCCCCHHHHHHHHHH
Q 041829 405 SLV-CFRLLPPHNDEDHGNKLNHKLLDDINST------GKIFISHT-VL-----SGKYILRFAVGAPLTEWRHVNAAWEV 471 (486)
Q Consensus 405 ~~v-~f~~~~~~~~~~~~~~~~~~l~~~l~~~------g~~~~~~~-~~-----~~~~~lRi~~~~~~~t~~di~~~~~~ 471 (486)
+++ .+++.. .+ ..++.+.|.++ | +.+.+. .+ .+..++|+++ . ++++++++++++
T Consensus 328 ~~~~~~~~~~-------~~--~~~l~~~l~~~~~~~~~g-i~v~~g~~f~~~~~~~~~~iRis~-~--~~~e~i~~~~~~ 394 (409)
T 2gb3_A 328 AFYITAELPV-------ED--AEEFARWMLTDFNMDGET-TMVAPLRGFYLTPGLGKKEIRIAC-V--LEKDLLSRAIDV 394 (409)
T ss_dssp SSEEEEECSS-------SC--HHHHHHHHHHSCCBTTEE-EECEEGGGGCSSTTTTSSEEEEEC-C--SCHHHHHHHHHH
T ss_pred eEEEEEEeCC-------CC--HHHHHHHHHhccccccCc-EEEeCchHhCCCCCCCCCEEEEEe-C--CCHHHHHHHHHH
Confidence 444 335531 11 24677777766 6 444443 22 2356899998 4 799999999999
Q ss_pred HHHHHHHHH
Q 041829 472 MQDKASALL 480 (486)
Q Consensus 472 l~~~~~~l~ 480 (486)
|+++.+++.
T Consensus 395 l~~~l~~~~ 403 (409)
T 2gb3_A 395 LMEGLKMFC 403 (409)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988765
No 58
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.93 E-value=3.7e-24 Score=215.93 Aligned_cols=310 Identities=17% Similarity=0.157 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCC-eEEEecCCCchhHHHHHH-
Q 041829 116 ELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEK-LVVYASDQTHSALQKACQ- 193 (486)
Q Consensus 116 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~-~~v~~s~~~H~s~~~a~~- 193 (486)
....++.+++++++|.+.+ ..++|+|||+++..++.+++...... .++ .+|+++...|.++..++.
T Consensus 71 ~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~al~~al~~~~~~~~~~-----~~gd~vii~~~~~~~~~~~~~~~ 138 (416)
T 1qz9_A 71 DLSERLGNRLATLIGARDG-------EVVVTDTTSINLFKVLSAALRVQATR-----SPERRVIVTETSNFPTDLYIAEG 138 (416)
T ss_dssp GHHHHHHHHHHTTTTCCTT-------SEEECSCHHHHHHHHHHHHHHHHHHH-----STTCCEEEEETTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcc-------cEEEeCChhHHHHHHHHhhccccccc-----CCCCcEEEEcCCCCCchHHHHHH
Confidence 4556677789999998654 58899999988877777665210000 033 367778889998766543
Q ss_pred ---Hh--CCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEe
Q 041829 194 ---IG--GIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHV 268 (486)
Q Consensus 194 ---~~--g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhv 268 (486)
.. |+ +++.+|. +++|+++|++ ++.+|+++.++|+||.+.|+++|.++|+++|+++|+
T Consensus 139 ~~~~~~~g~---~~~~v~~---------~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 200 (416)
T 1qz9_A 139 LADMLQQGY---TLRLVDS---------PEELPQAIDQ------DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIW 200 (416)
T ss_dssp HHHHHCSSC---EEEEESS---------GGGHHHHCST------TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHhcCCc---eEEEeCc---------HHHHHHHhCC------CceEEEEeccccCcccccCHHHHHHHHHHcCCEEEE
Confidence 33 88 8888875 6678887753 256899999999999999999999999999999999
Q ss_pred eccccchhccCccchhcccCCcCCCceeeecccccCCCCcc-eEEEEeCchHHHHHhcC-Ccccccccc-cccCCccCCC
Q 041829 269 DAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDC-SALWVKDRNTLIQSLST-NPEFLKNKA-SQANMVVDYK 345 (486)
Q Consensus 269 D~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~-g~l~~r~~~~~~~~~~~-~~~yl~~~~-~~~~~~~~~~ 345 (486)
|++|+.+....+ ... . ++|++++++||+++.+.++ |+++++++. .. .+.. ..+|..... .+....+.+.
T Consensus 201 D~a~~~g~~~~~-~~~----~-~~d~~~~s~~K~l~~g~~~~g~l~~~~~~-~~-~l~~~~~g~~g~~~~~~~~~~~~~~ 272 (416)
T 1qz9_A 201 DLAHSAGAVPVD-LHQ----A-GADYAIGCTYKYLNGGPGSQAFVWVSPQL-CD-LVPQPLSGWFGHSRQFAMEPRYEPS 272 (416)
T ss_dssp ECTTTTTTSCCC-HHH----H-TCSEEEECSSSTTCCCTTCCCEEEECTTT-TT-TSCCSCCCGGGBCTTSCCCSSCCBC
T ss_pred EccccccCcCCC-hhh----c-CCCEEEecCcccCCCCCCCeEEEEECHHH-Hh-ccCCCccccCccccccCCCCccCCC
Confidence 999985433221 111 1 5899999999998777777 999887642 11 1111 111110000 0000000000
Q ss_pred --CCccCCCC-C-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcC-C--CeEEecCC----CceEEEEEecCC
Q 041829 346 --DWQIPLGR-R-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQD-L--RFEVVTPR----IFSLVCFRLLPP 414 (486)
Q Consensus 346 --~~~~~~sr-~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~-~--~~~~~~~~----~~~~v~f~~~~~ 414 (486)
......+. . ....++..+++.+..++++++.++..++++++.+.|+++ | ++++..++ ..++++|++..
T Consensus 273 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~- 351 (416)
T 1qz9_A 273 NGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE- 351 (416)
T ss_dssp SSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT-
T ss_pred cchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC-
Confidence 00111111 1 112345567777766788999999999999999999985 6 89887543 35677777641
Q ss_pred CCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 415 HNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 415 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
..++.+.|.++| +.+. ..+..++|+++.+..++++|+++++++|+++.++
T Consensus 352 ----------~~~l~~~l~~~g-i~~~---~~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 352 ----------GYAVIQALIDRG-VIGD---YREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp ----------HHHHHHHHHTTT-EECE---EETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHhCC-cEec---cCCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 256777888887 4432 2234689999932488999999999999998765
No 59
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.93 E-value=5.9e-24 Score=215.91 Aligned_cols=326 Identities=13% Similarity=0.091 Sum_probs=221.6
Q ss_pred ccccChhhHHHHHHHHHHHHHHcC----CCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecC
Q 041829 107 SWITSPAATELEMIVLDWLAKLLK----LPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASD 182 (486)
Q Consensus 107 ~~~~~~~~~~le~~~~~~la~l~g----~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~ 182 (486)
.|....+..++++++.+++.+..| .+.+ ..++|+|||+||..++.+.+. +++.|+++.
T Consensus 81 ~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~-------~v~~~~gg~~a~~~~~~~l~~-----------~gd~vl~~~ 142 (435)
T 3piu_A 81 LFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN-------HLVLTAGATSANETFIFCLAD-----------PGEAVLIPT 142 (435)
T ss_dssp HCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG-------GEEEEEHHHHHHHHHHHHHCC-----------TTCEEEEEE
T ss_pred ccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHH-------HEEEcCChHHHHHHHHHHhcC-----------CCCeEEECC
Confidence 344455678999998888887766 3333 589999999999988876543 677888999
Q ss_pred CCchhHHHHHH-HhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC---hHHHHHH
Q 041829 183 QTHSALQKACQ-IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP---LLALGNI 258 (486)
Q Consensus 183 ~~H~s~~~a~~-~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~---l~~I~~i 258 (486)
..|.++..++. ..|. +++.+|.+++++|.+|+++|++++++..+.+.++.+|+++.++|++|.+-| +++|+++
T Consensus 143 p~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~ 219 (435)
T 3piu_A 143 PYYPGFDRDLKWRTGV---EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSF 219 (435)
T ss_dssp SCCTTHHHHTTTTTCC---EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred CccccHHHHHHHhcCC---EEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHH
Confidence 99999998887 6888 999999987656889999999999886666666788999999999999954 6888899
Q ss_pred HHHhCCEEEeeccccchhccCccchh---cccC--C------cCCCceeeecccccC-CCCcceEEEEeCchHHHHHhcC
Q 041829 259 AKSNGMWFHVDAAYAGSACICPEYRQ---YIDG--V------EEADSFNMNAHKWFL-TNFDCSALWVKDRNTLIQSLST 326 (486)
Q Consensus 259 a~~~g~~lhvD~A~g~~~~~~~~~~~---~~~~--~------~~aDs~~~~~hK~l~-~p~~~g~l~~r~~~~~~~~~~~ 326 (486)
|++||+++++|++|+++.+....+.. .... + .....+..++||.++ ....+|+++.+++.... .+..
T Consensus 220 ~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~-~~~~ 298 (435)
T 3piu_A 220 VEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVA-AATK 298 (435)
T ss_dssp HHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHH-HHHH
T ss_pred HHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHH-HHHH
Confidence 99999999999999875432221111 1000 0 112266889999997 44568988886654332 2221
Q ss_pred CcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC--hhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCc
Q 041829 327 NPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG--LENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIF 404 (486)
Q Consensus 327 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~ 404 (486)
...+.. ........+...+.... .+.+++..++..++++++.+.|++. ++++..+...
T Consensus 299 ~~~~~~-------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g 358 (435)
T 3piu_A 299 MSSFGL-------------------VSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAG 358 (435)
T ss_dssp HGGGSC-------------------CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSS
T ss_pred HhhcCC-------------------CCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCee
Confidence 111110 00011111222222111 2345677788888999999999988 8887754443
Q ss_pred eEEEEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEee-eE--CCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 405 SLVCFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHT-VL--SGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 405 ~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~~--~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
.++.+.+...... .......++.++|.++ | +.+.+. .+ .+..++|+++ ... ++++|++++++|.++.+++
T Consensus 359 ~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~g-i~v~~g~~~~~~~~~~iRi~~-~~~-~~e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 359 LFCWVDMRHLLRS--NTFEAEMELWKKIVYEVH-LNISPGSSCHCTEPGWFRVCF-ANL-PERTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp SEEEEECGGGSSS--SSHHHHHHHHHHHHHTSC-EECEEGGGGTCSSTTEEEEEC-SSS-CHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEccccccc--CCchhHHHHHHHHHHHCC-EEEeCCcccCCCCCCEEEEEe-eCC-CHHHHHHHHHHHHHHHHHH
Confidence 5666666431100 0111335677888777 6 555543 22 3456899999 444 8999999999999988765
No 60
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.93 E-value=9.3e-25 Score=219.67 Aligned_cols=315 Identities=12% Similarity=0.052 Sum_probs=217.2
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCch
Q 041829 107 SWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHS 186 (486)
Q Consensus 107 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~ 186 (486)
.|...++..++.+++.+++++++|.+.+. ....++|+|||+++..++.+... +++.|+++..+|.
T Consensus 73 ~y~~~~g~~~l~~~l~~~l~~~~g~~~~~----~~~i~~~~g~~~a~~~~~~~l~~-----------~gd~vl~~~~~~~ 137 (407)
T 3nra_A 73 AYTEYRGDLGIRDLLAPRLAAFTGAPVDA----RDGLIITPGTQGALFLAVAATVA-----------RGDKVAIVQPDYF 137 (407)
T ss_dssp HSCCTTCCHHHHHHHHHHHHHHHTSCCCT----TTSEEEESHHHHHHHHHHHTTCC-----------TTCEEEEEESCCT
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhCCCCCC----CCcEEEeCCcHHHHHHHHHHhCC-----------CCCEEEEcCCccc
Confidence 35556677899999999999999985310 01589999999999888765432 6778999999999
Q ss_pred hHHHHHHHhCCCCCCeEEEeCCC----CCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC---hHHHHHHH
Q 041829 187 ALQKACQIGGIHPQNFRVLKTDS----STNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP---LLALGNIA 259 (486)
Q Consensus 187 s~~~a~~~~g~g~~~v~~v~~~~----~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~---l~~I~~ia 259 (486)
++..+++..|. +++.+|.+. +.++.+|+++|++++++. +.+|+++.++|+||.+-| +++|+++|
T Consensus 138 ~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~i~~~~ 208 (407)
T 3nra_A 138 ANRKLVEFFEG---EMVPVQLDYVSADETRAGLDLTGLEEAFKAG------ARVFLFSNPNNPAGVVYSAEEIGQIAALA 208 (407)
T ss_dssp HHHHHHHHTTC---EEEEEEBCCCSSCCSSCCBCHHHHHHHHHTT------CCEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred chHHHHHHcCC---EEEEeecccccccCcCCCcCHHHHHHHHhhC------CcEEEEcCCCCCCCcccCHHHHHHHHHHH
Confidence 99999999999 999999842 135799999999999763 347888999999999988 99999999
Q ss_pred HHhCCEEEeeccccchhccCccchhccc---CCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCC-ccccccc
Q 041829 260 KSNGMWFHVDAAYAGSACICPEYRQYID---GVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTN-PEFLKNK 334 (486)
Q Consensus 260 ~~~g~~lhvD~A~g~~~~~~~~~~~~~~---~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~-~~yl~~~ 334 (486)
++||+++|+|++|+++............ .....+.++.+++|+++.| ..+|+++.+ +.... .+... ..+..
T Consensus 209 ~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~-~l~~~~~~~~~-- 284 (407)
T 3nra_A 209 ARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS-RAIIA-RMEKLQAIVSL-- 284 (407)
T ss_dssp HHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEEC-HHHHH-HHHHHHHHHTS--
T ss_pred HHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcC-HHHHH-HHHHHHhhhcc--
Confidence 9999999999999875432111111110 1123457788899999744 567887764 33222 22111 01100
Q ss_pred ccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--ChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEec
Q 041829 335 ASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--GLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLL 412 (486)
Q Consensus 335 ~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~ 412 (486)
....+..+++...+ +.+.+++..++..++++++.+.|+++|++++..+.....+.+.+.
T Consensus 285 -------------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 345 (407)
T 3nra_A 285 -------------------RAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLP 345 (407)
T ss_dssp -------------------SSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCC
T ss_pred -------------------CCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCC
Confidence 00112222222222 335678888899999999999999998998764444344544543
Q ss_pred CCCCCcccchHHHHHHHHHHHcc-CcEEEEee-eE--CCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 413 PPHNDEDHGNKLNHKLLDDINST-GKIFISHT-VL--SGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 413 ~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~~--~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
... . ...++.+.|.++ | +++.+. .+ .+..++|+++ . +++++|++++++|.++.+++
T Consensus 346 ~~~-----~--~~~~~~~~l~~~~g-i~v~~g~~~~~~~~~~iRis~-~--~~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 346 KLA-----V--APAEFVKILRLQAG-VVVTPGTEFSPHTADSVRLNF-S--QDHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp CBS-----S--CHHHHHHHHHHHHC-EECEEGGGTCTTCTTBEEEEC-C--SCHHHHHHHHHHHHHHHHHH
T ss_pred CCC-----C--CHHHHHHHHHHhCC-EEEeCchhhCCCCCCEEEEEe-C--CCHHHHHHHHHHHHHHHHHh
Confidence 211 1 124566777654 7 555443 22 2456899999 3 38999999999999987754
No 61
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.93 E-value=1.3e-24 Score=217.34 Aligned_cols=329 Identities=12% Similarity=0.049 Sum_probs=222.5
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCC-eEEcCchhHHHHHHHHHHHHHHHHHhC
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGG-GVIQGTASEAVLVVLLAARDKALKRVG 169 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~-~~~t~ggt~a~~~al~~a~~~~~~~~~ 169 (486)
..+.+.+...+......|....+..++++++.+|+.+.+|.+.+ ... .++|+|||+++..++.+...
T Consensus 42 ~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~-----~~~~v~~~~g~~~a~~~~~~~~~~------- 109 (389)
T 1gd9_A 42 QHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEAD-----PKTEIMVLLGANQAFLMGLSAFLK------- 109 (389)
T ss_dssp HHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC-----TTTSEEEESSTTHHHHHHHTTTCC-------
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-----CCCeEEEcCChHHHHHHHHHHhCC-------
Confidence 34445555544333334555556789999999999998886322 125 89999999999888765432
Q ss_pred ccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 170 KNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 170 ~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++.|+++..+|+++..+++..|+ +++.+|++++++|.+|+++|+++++++ +.+|+++.++|+||.+
T Consensus 110 ----~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~ 176 (389)
T 1gd9_A 110 ----DGEEVLIPTPAFVSYAPAVILAGG---KPVEVPTYEEDEFRLNVDELKKYVTDK------TRALIINSPCNPTGAV 176 (389)
T ss_dssp ----TTCEEEEEESCCTTHHHHHHHHTC---EEEEEECCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTTTCCC
T ss_pred ----CCCEEEEcCCCchhHHHHHHHCCC---EEEEeccCCccCCCCCHHHHHHhcCcC------ceEEEEECCCCCCCcC
Confidence 567888999999999999999999 999999985334789999999988642 4577888999999999
Q ss_pred C---ChHHHHHHHHHhCCEEEeeccccchhccCccchhc--ccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHH
Q 041829 250 D---PLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQY--IDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQS 323 (486)
Q Consensus 250 d---~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~--~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~ 323 (486)
- ++++|+++|++||+++++|++|+++.......... +.+....|.++.++||+++.| ..+|++++++ .... .
T Consensus 177 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~-~ 254 (389)
T 1gd9_A 177 LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPS-WIIE-R 254 (389)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCH-HHHH-H
T ss_pred CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECH-HHHH-H
Confidence 6 59999999999999999999998765421101111 112235788999999998744 3478888763 3222 2
Q ss_pred hcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--Chh--hHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Q 041829 324 LSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--GLE--NLQGYIRNHIQLAKHFEGLVAQDLRFEVV 399 (486)
Q Consensus 324 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~--g~~~~~~~~~~~a~~l~~~l~~~~~~~~~ 399 (486)
+.....+. .. ....+..+++...+ +.+ .++++.++..++++++.+.|+++ ++++.
T Consensus 255 l~~~~~~~------------------~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 313 (389)
T 1gd9_A 255 MVKFQMYN------------------AT--CPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTV 313 (389)
T ss_dssp HHHHHTTT------------------TC--SCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCC
T ss_pred HHHHHhhh------------------cc--CCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-CCeec
Confidence 21100000 00 11222333333333 234 67888889999999999999998 88776
Q ss_pred cCCCceEEEEEecCCCCCcccchHHHHHHHHHHH-ccCcEEEEee-eEC--CEeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 400 TPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDIN-STGKIFISHT-VLS--GKYILRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 400 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~-~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
.+.....+++.+...+ .+ ..++.+.|. +.| +.+.+. .+. +..++|+++ .. +++++++++++|.++
T Consensus 314 ~~~~~~~~~~~~~~~~-----~~--~~~~~~~l~~~~g-i~v~~g~~~~~~~~~~iRi~~-~~--~~~~i~~~l~~l~~~ 382 (389)
T 1gd9_A 314 KPKGAFYIFPRIRDTG-----LT--SKKFSELMLKEAR-VAVVPGSAFGKAGEGYVRISY-AT--AYEKLEEAMDRMERV 382 (389)
T ss_dssp CCCBTTEECCBCGGGT-----CC--HHHHHHHHHHHTC-EECEEGGGGCGGGTTBEEEEC-CS--CHHHHHHHHHHHHHH
T ss_pred CCCeeeEEEEeccCCC-----CC--HHHHHHHHHHhCC-EEEeCchhhCCCCCCeEEEEe-cC--CHHHHHHHHHHHHHH
Confidence 4332223444553211 11 246777777 667 444443 221 246899999 32 899999999999988
Q ss_pred HHH
Q 041829 476 ASA 478 (486)
Q Consensus 476 ~~~ 478 (486)
.++
T Consensus 383 ~~~ 385 (389)
T 1gd9_A 383 LKE 385 (389)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 62
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.93 E-value=4.3e-25 Score=216.88 Aligned_cols=339 Identities=14% Similarity=0.063 Sum_probs=221.2
Q ss_pred ccccCCCCCCHHHHHHHHHHHhcC----cCcccc---ccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEE-cCchh
Q 041829 79 YFAYYPSNSSVAGFLGEMLSAGLN----IVGFSW---ITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVI-QGTAS 150 (486)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~n----~~~~~~---~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~-t~ggt 150 (486)
.+.|.|++...+..+.+.+...+. ++...+ ..++.+.++-+++++.+++++|.++.+ +.+| |+|||
T Consensus 6 ~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~------~v~f~t~~~T 79 (361)
T 3m5u_A 6 KINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDY------EVLFLQGGAS 79 (361)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTE------EEEEESSHHH
T ss_pred eEeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCc------eEEEEcCcHH
Confidence 345667766666666666655442 222221 235677888889999999999996431 4677 99999
Q ss_pred HHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhC
Q 041829 151 EAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTI 230 (486)
Q Consensus 151 ~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~ 230 (486)
+++.+++.... + +....+|+++..+|..+ +.++..|+ ++..+++++++.+.++++. + |+++
T Consensus 80 ~a~n~~~~~~~----~-----~~~~~~i~~~~~~~~~~-~~a~~~G~---~v~~~~~~~~g~~~~~~~~-~--l~~~--- 140 (361)
T 3m5u_A 80 LQFAMIPMNLA----L-----NGVCEYANTGVWTKKAI-KEAQILGV---NVKTVASSEESNFDHIPRV-E--FSDN--- 140 (361)
T ss_dssp HHHHHHHHHHC----C-----SSCEEEEECSHHHHHHH-HHHHHTTC---CEEEEEECTTTTSCSCCCC-C--CCTT---
T ss_pred HHHHHHHHhcC----C-----CCeEEEEeCCHHHHHHH-HHHHHcCC---ceEEEecccCcCCCcCChh-h--cCCC---
Confidence 99988776432 1 11223455555556443 44566788 9999999876422256665 3 5543
Q ss_pred CCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcce
Q 041829 231 GLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCS 310 (486)
Q Consensus 231 g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g 310 (486)
+.+|.+++.+|.+|.+.|. |++ +|+++|||++++.+....+ ++..|.+++++|||++ |.|+|
T Consensus 141 ---t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id--------~~~~d~~~~s~~K~~g-p~G~g 202 (361)
T 3m5u_A 141 ---ADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVD--------FSNIALFYGGVQKNAG-ISGLS 202 (361)
T ss_dssp ---SSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCC--------CTTEEEEEEETTTTSS-CTTCE
T ss_pred ---CCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCC--------cccCCEEEEechhccC-CCccE
Confidence 3478889999999998552 344 4999999999987766543 2257999999999995 99999
Q ss_pred EEEEeCchHHHHHhc-CCcccccccccccCCccCCCCCccCCCCC-CCcHHHHHHHHHhChh-hHHHHHHHHHHHHHHHH
Q 041829 311 ALWVKDRNTLIQSLS-TNPEFLKNKASQANMVVDYKDWQIPLGRR-FRSLKLWMVLRLYGLE-NLQGYIRNHIQLAKHFE 387 (486)
Q Consensus 311 ~l~~r~~~~~~~~~~-~~~~yl~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~ 387 (486)
++++|++. +.+... ..+.|+........ . ...++.. .....+..+++.+-.+ |++++.++..+++++++
T Consensus 203 ~l~~~~~~-~~~~~~~~~p~~~~~~~~~~~---~----~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~ 274 (361)
T 3m5u_A 203 CIFIRKDM-LERSKNKQIPSMLNYLTHAEN---Q----SLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLY 274 (361)
T ss_dssp EEEEEHHH-HHHHHTCCCCGGGCHHHHHHT---T----TCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEcHHH-HhhhcCCCCCceeehHHHhhc---C----CCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 99998753 222222 22333211100000 0 0001111 1234566777777666 89999999999999999
Q ss_pred HHHhcCCCe-EEecCC--C-ceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHH
Q 041829 388 GLVAQDLRF-EVVTPR--I-FSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWR 463 (486)
Q Consensus 388 ~~l~~~~~~-~~~~~~--~-~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~ 463 (486)
+.|++++++ ++..++ . ..+++|.++... .....+...|.+.| +.+... ....+.+|+++ +.++|++
T Consensus 275 ~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~-------~~~~~~~~~L~~~g-I~~~~g-~~~~g~iRiS~-~~~~t~e 344 (361)
T 3m5u_A 275 ECIDLSNGFYKGHADKKDRSLMNVSFNIAKNK-------DLEPLFVKEAEEAG-MIGLKG-HRILGGIRASI-YNALNLD 344 (361)
T ss_dssp HHHHTSTTSEEESSCGGGBCSSEEEEEESSCT-------THHHHHHHHHHHTT-EECCBC-CTTTCSEEEEC-CTTSCHH
T ss_pred HHHHHCCCeeeccCCHHHcCCeEEEEECCCch-------hhhHHHHHHHHHCC-CEEecC-CCccCeEEEEc-cCCCCHH
Confidence 999999876 664332 2 357899986310 11135667777777 433322 11124699999 7789999
Q ss_pred HHHHHHHHHHHHHHH
Q 041829 464 HVNAAWEVMQDKASA 478 (486)
Q Consensus 464 di~~~~~~l~~~~~~ 478 (486)
|||+++++|+++.++
T Consensus 345 dId~l~~al~~~~~~ 359 (361)
T 3m5u_A 345 QVKTLCEFMKEFQGK 359 (361)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
No 63
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.93 E-value=2.2e-24 Score=215.75 Aligned_cols=323 Identities=11% Similarity=0.064 Sum_probs=223.1
Q ss_pred HHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhC
Q 041829 90 AGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVG 169 (486)
Q Consensus 90 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 169 (486)
+..+.+.+...+......|...++..++++++.+|+.+.+|.+.+ ....++|+|||+++..++.+...
T Consensus 56 ~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~-----~~~v~~~~g~t~al~~~~~~l~~------- 123 (389)
T 1o4s_A 56 PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDIS-----PDQVVVTNGAKQALFNAFMALLD------- 123 (389)
T ss_dssp CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCC-----GGGEEEESHHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-----HHHEEEecCHHHHHHHHHHHhCC-------
Confidence 344555665555543345555567899999999999988887421 12589999999999888876532
Q ss_pred ccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 170 KNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 170 ~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++.|+++..+|.++..+++..|. +++.+|.+++++|.+|+++|++++++. +.+|+++.++|++|.+
T Consensus 124 ----~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~ 190 (389)
T 1o4s_A 124 ----PGDEVIVFSPVWVSYIPQIILAGG---TVNVVETFMSKNFQPSLEEVEGLLVGK------TKAVLINSPNNPTGVV 190 (389)
T ss_dssp ----TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECCGGGTTCCCHHHHHHTCCTT------EEEEEEESSCTTTCCC
T ss_pred ----CCCEEEEcCCCchhHHHHHHHcCC---EEEEEecCCccCCCCCHHHHHHhcccC------ceEEEEcCCCCCCCCC
Confidence 567888999999999999999999 999999976334789999999988642 4578888999999999
Q ss_pred CC---hHHHHHHHHHhCCEEEeeccccchhccCc--cchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHH
Q 041829 250 DP---LLALGNIAKSNGMWFHVDAAYAGSACICP--EYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQS 323 (486)
Q Consensus 250 d~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~--~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~ 323 (486)
-| +++|+++|+++|+++++|++|+.+....+ .... +.+....|.++.++||+++.| ..+|++++++ +... .
T Consensus 191 ~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~-~~~~-~ 267 (389)
T 1o4s_A 191 YRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILD-VSEGFDRIVYINGFSKSHSMTGWRVGYLISSE-KVAT-A 267 (389)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHH-HCSSSTTEEEEEESTTTTTCGGGCCEEEECCH-HHHH-H
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhh-cCCCCCcEEEEeechhhcCCcccceEEEEeCH-HHHH-H
Confidence 66 99999999999999999999987543211 1111 112236789999999999644 3378888754 3222 2
Q ss_pred hcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC
Q 041829 324 LSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRI 403 (486)
Q Consensus 324 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~ 403 (486)
+.....+. +.....+..+++...+.. +++++.++..++++++.+.|+++ ++++.. +.
T Consensus 268 l~~~~~~~--------------------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~ 324 (389)
T 1o4s_A 268 VSKIQSHT--------------------TSCINTVAQYAALKALEV-DNSYMVQTFKERKNFVVERLKKM-GVKFVE-PE 324 (389)
T ss_dssp HHHHHHHH--------------------TCSCCHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT-TCCCCC-CS
T ss_pred HHHHhhhc--------------------ccCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhc-CCeeec-CC
Confidence 21100000 001123344555555533 37788888999999999999998 887764 44
Q ss_pred ceE-EEEEecCCCCCcccchHHHHHHHHHHH-ccCcEEEEee-eECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041829 404 FSL-VCFRLLPPHNDEDHGNKLNHKLLDDIN-STGKIFISHT-VLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 404 ~~~-v~f~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~-~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 477 (486)
.++ +.+.+. . + ..++.+.|. +.| +.+.+. .+...+++|+++ . ++++++++++++|.++.+
T Consensus 325 ~~~~~~~~~~-~-------~--~~~l~~~l~~~~g-i~v~~g~~f~~~~~~Ris~-~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 325 GAFYLFFKVR-G-------D--DVKFCERLLEEKK-VALVPGSAFLKPGFVRLSF-A--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp BSSEEEEECS-S-------C--HHHHHHHHHHHHC-EECEEGGGGTCTTEEEEEC-C--SCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEeCC-C-------C--HHHHHHHHHHHCC-EEEeCchhcCCCCeEEEEE-e--CCHHHHHHHHHHHHHHHh
Confidence 343 444543 1 1 145677776 667 444433 332234899999 3 389999999999987653
No 64
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.93 E-value=2.1e-24 Score=215.14 Aligned_cols=325 Identities=11% Similarity=0.034 Sum_probs=214.5
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhH-
Q 041829 110 TSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSAL- 188 (486)
Q Consensus 110 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~- 188 (486)
.++.+.++.+++.+++++++|.+. ..++|+|||+|+..++... . +++.|+++...|++.
T Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~~--------~v~~~~sgt~a~~~~~~~~-~-----------~gd~vi~~~~~~~~~~ 88 (379)
T 3ke3_A 29 MSKAFQEVMNDLLSNLKTVYNAEA--------AVIIPGSGTYGMEAVARQL-T-----------IDEDCLIIRNGWFSYR 88 (379)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCSE--------EEEEESCHHHHHHHHHHHH-C-----------TTCEEEEEECSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCC--------EEEEcCChhHHHHHHHHhC-C-----------CCCeEEEEeCCchhHH
Confidence 467778888999999999999874 3789999999988865321 1 566777777787763
Q ss_pred -HHHHHHhCCCCCCeEEEeCCCCC------C-CccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC---hHHHHH
Q 041829 189 -QKACQIGGIHPQNFRVLKTDSST------N-YSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP---LLALGN 257 (486)
Q Consensus 189 -~~a~~~~g~g~~~v~~v~~~~~~------~-~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~---l~~I~~ 257 (486)
...++..|++. +++.+|.+..+ . ..+|+++|++++++.. +.+|++++++|++|.+.| +++|++
T Consensus 89 ~~~~~~~~g~~~-~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~~~G~~~~~~~l~~i~~ 162 (379)
T 3ke3_A 89 WTQILEKGKFAK-SSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDK-----SAIVYAPHVETSSGIILSEEYIKALSE 162 (379)
T ss_dssp HHHHHHHHCCSS-EEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHT-----CSEEEEESEETTTTEECCHHHHHHHHH
T ss_pred HHHHHHHhCCCC-ceEEEeccccccccccCCCCCCCHHHHHHHHhhcC-----CcEEEEEeecCCCceeCCHHHHHHHHH
Confidence 34556666532 66777764311 1 2689999999996531 347888999999999999 999999
Q ss_pred HHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhc-CCcccccccc-
Q 041829 258 IAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLS-TNPEFLKNKA- 335 (486)
Q Consensus 258 ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~-~~~~yl~~~~- 335 (486)
+|+++|+++|+|++++ +....+ ... .++|.+++++||++++|.++|++++++.. +..... ...+|.....
T Consensus 163 ~~~~~~~~li~D~~~~-g~~~~~-~~~-----~~~d~~~~s~~K~l~~~~g~g~~~~~~~~-~~~l~~~~~~~~~~~~~~ 234 (379)
T 3ke3_A 163 AVHSVGGLLVIDCIAS-GCVWLD-MKE-----LGIDVLISAPQKGWSSTPCAGLVMLSAAA-IKKVESTESNCFSLDLKQ 234 (379)
T ss_dssp HHHHTTCEEEEECTTC-TTCCCC-HHH-----HTCSEEEECTTTTTCSCCCEEEEEECHHH-HHHHHTCCCSCSTTCHHH
T ss_pred HHHHcCCEEEEEeccc-CCcccc-ccc-----cCCCEEEecchhhcCCCCceEEEEECHHH-HHhhhcCCCCceeecHHH
Confidence 9999999999999987 433221 111 16899999999999999999999887643 222221 1122221100
Q ss_pred ccc-CCccCCCCCccCCCCC-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC--ceEEEEEe
Q 041829 336 SQA-NMVVDYKDWQIPLGRR-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRI--FSLVCFRL 411 (486)
Q Consensus 336 ~~~-~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~--~~~v~f~~ 411 (486)
... .............+.. ....++.++++.+..+|++++.++..++++++++.|+++ |++++.++. .+.+....
T Consensus 235 ~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~ 313 (379)
T 3ke3_A 235 WLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSY 313 (379)
T ss_dssp HHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEE
T ss_pred HHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEc
Confidence 000 0000000000001111 112244466666667788999999999999999999998 888765432 34333322
Q ss_pred cCCCCCcccchHHHHHHHHHHHccCcEEEEeee------ECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 041829 412 LPPHNDEDHGNKLNHKLLDDINSTGKIFISHTV------LSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 412 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~------~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
.+ . .. ..+.+.|.++|.. +.+.. ..+..++|+++ +.++|++||++++++|+++.+++.
T Consensus 314 ~~-~------~~--~~~~~~L~~~Gi~-v~~g~~~~~~~~~~~~~lRis~-~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 314 TE-R------DD--MHKGSAFAEAGLQ-IAAGVPLKVGEPDNFKTFRLGL-FGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp CS-C------HH--HHSSHHHHHTTCC-CEECCCCSSCCCTTCCEEEEEC-CSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cC-C------cc--hHHHHHHHHCCeE-EeCCccccccccCcCCEEEEeC-CcCCCHHHHHHHHHHHHHHHHHhc
Confidence 22 1 11 1124556667744 44332 11246899999 778899999999999999988765
No 65
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.93 E-value=3.9e-24 Score=229.42 Aligned_cols=308 Identities=12% Similarity=0.095 Sum_probs=214.2
Q ss_pred HHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHhCCCCC
Q 041829 121 VLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQ 200 (486)
Q Consensus 121 ~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~ 200 (486)
..+.+++++|.+.. .++++|+|++|..++.+... +++.|+++..+|.|+..++...|+
T Consensus 210 ~ee~la~l~G~d~~--------i~~~~Gtt~a~~~~i~al~~-----------~GD~Vlv~~~~h~s~~~~~~~~G~--- 267 (755)
T 2vyc_A 210 SEKYAARVFGADRS--------WSVVVGTSGSNRTIMQACMT-----------DNDVVVVDRNCHKSIEQGLMLTGA--- 267 (755)
T ss_dssp HHHHHHHHHTCSEE--------EEESSHHHHHHHHHHHHHCC-----------TTCEEEEESSCCHHHHHHHHHHCC---
T ss_pred HHHHHHHHhCCCce--------EEECCcHHHHHHHHHHHhcC-----------CCCEEEECCCchHHHHHHHHHcCC---
Confidence 34559999998753 67778778888888776543 678899999999999999999999
Q ss_pred CeEEEeCCCCC---CCcc-----CHHHHHHHHHHH--H--hCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEe
Q 041829 201 NFRVLKTDSST---NYSL-----SPDSLAEAISRD--L--TIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHV 268 (486)
Q Consensus 201 ~v~~v~~~~~~---~~~i-----d~~~L~~~i~~~--~--~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhv 268 (486)
+++.++.+.++ .+.+ |+++|+++|++. + +.+.+|.+++++.+ |++|.+.|+++|+++|+++|+++||
T Consensus 268 ~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~liv 346 (755)
T 2vyc_A 268 KPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHF 346 (755)
T ss_dssp EEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEE
T ss_pred EEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEE
Confidence 99999886431 1235 999999999863 2 24566777888886 6899999999999999999999999
Q ss_pred eccccchhccCccchhcccCCcC--CCc------eeeecccccCCCCcceEEEEeCc--h----HHHHHhcCCccccccc
Q 041829 269 DAAYAGSACICPEYRQYIDGVEE--ADS------FNMNAHKWFLTNFDCSALWVKDR--N----TLIQSLSTNPEFLKNK 334 (486)
Q Consensus 269 D~A~g~~~~~~~~~~~~~~~~~~--aDs------~~~~~hK~l~~p~~~g~l~~r~~--~----~~~~~~~~~~~yl~~~ 334 (486)
|+||+++..+.+.+++.. .+.+ +|. ++.++||++++|.++|++++++. . .+.+.+ ..
T Consensus 347 DeA~~~~~~~~~~~~~~~-~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~----~~---- 417 (755)
T 2vyc_A 347 DEAWYGYARFNPIYADHY-AMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAY----MM---- 417 (755)
T ss_dssp ECTTCTTGGGCGGGTTSS-SSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHH----HH----
T ss_pred ECcCchhcccCcccCCcc-hhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHH----HH----
Confidence 999987655544332111 1124 677 99999999999988999999875 1 111110 00
Q ss_pred ccccCCccCCCCCccCCCCC--CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCC---------eEEecCCC
Q 041829 335 ASQANMVVDYKDWQIPLGRR--FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLR---------FEVVTPRI 403 (486)
Q Consensus 335 ~~~~~~~~~~~~~~~~~sr~--~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~---------~~~~~~~~ 403 (486)
.+.+.+ ....++-++++.+..+|.++++++..++++++++.|+++++ |+++.++.
T Consensus 418 --------------~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~ 483 (755)
T 2vyc_A 418 --------------HATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEV 483 (755)
T ss_dssp --------------TSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSE
T ss_pred --------------hCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchh
Confidence 011111 11224445666666665678899999999999999999877 77765431
Q ss_pred c-------------------------------------------------eEEEEEecCCCCCc--ccchHHHHHHHHHH
Q 041829 404 F-------------------------------------------------SLVCFRLLPPHNDE--DHGNKLNHKLLDDI 432 (486)
Q Consensus 404 ~-------------------------------------------------~~v~f~~~~~~~~~--~~~~~~~~~l~~~l 432 (486)
. ..++|...+.+.+. .+..-....+.+.|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L 563 (755)
T 2vyc_A 484 VTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWL 563 (755)
T ss_dssp EECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHH
T ss_pred ccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHH
Confidence 1 24455554311100 00011113556666
Q ss_pred HccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 433 NSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 433 ~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
.+.| +.+.. .+...+|+++ ++.+|++++++++++|+++.+..
T Consensus 564 ~~~g-I~~e~---~~~~~v~~~~-~~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 564 GRHG-IVPTR---TTDFQIMFLF-SMGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp HTTT-CCCSE---ECSSEEEEEC-CTTCCTTTTHHHHHHHHHHHHHH
T ss_pred HHCC-CEEee---cCCCeEEEEE-CCCCCHHHHHHHHHHHHHHHHhh
Confidence 6666 33322 2345799999 88999999999999999987654
No 66
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.93 E-value=2.3e-24 Score=216.37 Aligned_cols=333 Identities=11% Similarity=-0.013 Sum_probs=223.2
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCc
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGK 170 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 170 (486)
..+.+.+...+......|... ..++++++.+|+.+.+|.+.. ....++|+|||+++..++.+...
T Consensus 47 ~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~-----~~~v~~t~g~~~a~~~~~~~l~~-------- 111 (399)
T 1c7n_A 47 PELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQ-----TDWIINTAGVVPAVFNAVREFTK-------- 111 (399)
T ss_dssp HHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCC-----GGGEEEESSHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCC-----hhhEEEcCCHHHHHHHHHHHhcC--------
Confidence 344444544443322334333 789999999999998884321 12589999999999888876532
Q ss_pred cCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCC-CCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 171 NSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTD-SSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 171 ~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~-~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++.|+++..+|.++..+++..|. +++.+|.+ .+++|.+|+++|++++++. .+.+|+++.++|+||.+
T Consensus 112 ---~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~ 180 (399)
T 1c7n_A 112 ---PGDGVIIITPVYYPFFMAIKNQER---KIIECELLEKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPHNPVGRV 180 (399)
T ss_dssp ---TTCEEEECSSCCTHHHHHHHTTTC---EEEECCCEEETTEEECCHHHHHHHHTCT-----TEEEEEEESSBTTTTBC
T ss_pred ---CCCEEEEcCCCcHhHHHHHHHcCC---EEEecccccCCCCEEEcHHHHHHHhccC-----CCcEEEEcCCCCCCCcC
Confidence 567888999999999999999999 89999886 3334679999999998621 25678889999999999
Q ss_pred CC---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCC----cCCCceeeecccccCCC-CcceEEEEeCchHHH
Q 041829 250 DP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGV----EEADSFNMNAHKWFLTN-FDCSALWVKDRNTLI 321 (486)
Q Consensus 250 d~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~----~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~ 321 (486)
.| +++|+++|++||+++++|++|+++......... +..+ ...+.++.+++|+++.| ..+|++++++++...
T Consensus 181 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~ 259 (399)
T 1c7n_A 181 WKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTV-FQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRE 259 (399)
T ss_dssp CCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCC-GGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCccc-HHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHH
Confidence 88 999999999999999999999875432111111 1112 13346778899999744 357999887654333
Q ss_pred HHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--ChhhHHHHHHHHHHHHHHHHHHHhc-CCCeEE
Q 041829 322 QSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--GLENLQGYIRNHIQLAKHFEGLVAQ-DLRFEV 398 (486)
Q Consensus 322 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~l~~-~~~~~~ 398 (486)
........+ + .+ ....+..+++...+ +.+.+++..++..++++++.+.|++ +|++++
T Consensus 260 ~l~~~~~~~-----------------~--~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 319 (399)
T 1c7n_A 260 RFTKSRDAT-----------------S--GM-PFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKA 319 (399)
T ss_dssp HHHHHHHHT-----------------T--CC-CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBC
T ss_pred HHHHHHhhc-----------------c--cC-CCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeE
Confidence 221111111 0 00 01223333332222 4567888888899999999999998 889877
Q ss_pred ecCCCceEE-EEEecCCCCCcccchHHHHHHHHHHH-ccCcEEEEeeeEC--CEeEEEEEecCCCCCHHHHHHHHHHHHH
Q 041829 399 VTPRIFSLV-CFRLLPPHNDEDHGNKLNHKLLDDIN-STGKIFISHTVLS--GKYILRFAVGAPLTEWRHVNAAWEVMQD 474 (486)
Q Consensus 399 ~~~~~~~~v-~f~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~ 474 (486)
. ++..+++ .+.+...+ .+ ..++.+.|. +.|..+..+..+. +..++|+++ .. .+++++++++.|.+
T Consensus 320 ~-~~~~~~~~~~~~~~~~-----~~--~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~-~~--~~~~l~~~l~~l~~ 388 (399)
T 1c7n_A 320 P-LIEGTYLQWIDFRALK-----MD--HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINL-AA--PSSVIQESLERLNK 388 (399)
T ss_dssp C-CCSBSSEEEEECGGGC-----CC--HHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEEC-CS--CHHHHHHHHHHHHH
T ss_pred e-cCCceEEEEEEcccCC-----CC--HHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEe-cc--CHHHHHHHHHHHHH
Confidence 5 4444555 45664211 01 246777886 5675444333222 346899999 33 47899999999999
Q ss_pred HHHHHHH
Q 041829 475 KASALLA 481 (486)
Q Consensus 475 ~~~~l~~ 481 (486)
+.+++.+
T Consensus 389 ~l~~~~~ 395 (399)
T 1c7n_A 389 ALKDLKN 395 (399)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 8887654
No 67
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.93 E-value=5.7e-25 Score=225.99 Aligned_cols=326 Identities=13% Similarity=0.066 Sum_probs=208.2
Q ss_pred cccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchh
Q 041829 108 WITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSA 187 (486)
Q Consensus 108 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s 187 (486)
|..++...++|+.+.+++++++|.+.+.+ ...+++.+|+.+|+.++.+..+ +++.|++++..|.+
T Consensus 82 y~~~~~~~~le~~~~~~~a~~~g~~~~~~----~~~V~~~sGs~an~~~~~all~-----------pGD~Vl~~~~~~~~ 146 (483)
T 1rv3_A 82 YGGTEHIDELETLCQKRALQAYGLDPQCW----GVNVQPYSGSPANFAVYTALVE-----------PHGRIMGLDLPDGG 146 (483)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCTTTE----EEECCCSSHHHHHHHHHHHHTC-----------TTCEEEEECGGGTC
T ss_pred cCcchhHHHHHHHHHHHHHHHhCCCcccC----ceEEEECCcHHHHHHHHHHhcC-----------CCCEEEEecCccCc
Confidence 44567788999999999999999975300 0124555566888776765432 78889999888876
Q ss_pred HHH--------HHHHhCCCCCCeEEEeC--CCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHH
Q 041829 188 LQK--------ACQIGGIHPQNFRVLKT--DSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGN 257 (486)
Q Consensus 188 ~~~--------a~~~~g~g~~~v~~v~~--~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ 257 (486)
+.. .+...|. .++.+++ +++ +|.+|+++|++++++.. |.+|++ .+++++ .+.|+++|++
T Consensus 147 ~~~~~~~~~~~~v~~~G~---~~~~v~~~~~~~-~~~iD~d~le~~i~~~~-----tklIi~-~~sn~~-~~~dl~~i~~ 215 (483)
T 1rv3_A 147 HLTHGFMTDKKKISATSI---FFESMAYKVNPD-TGYIDYDRLEENARLFH-----PKLIIA-GTSCYS-RNLDYGRLRK 215 (483)
T ss_dssp CGGGCCBCSSCBCSHHHH---HSEEEEECBCTT-TCSBCHHHHHHHHHHHC-----CSEEEE-CCSSCC-SCCCHHHHHH
T ss_pred CcchhhhhcccCcccccc---eEEEEECccccC-CCcCCHHHHHHHHhhcC-----CcEEEE-eCCcCC-CcCCHHHHHH
Confidence 643 2334442 2445554 543 47999999999997431 456777 666666 8899999999
Q ss_pred HHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchH-HHHHhcCCccccccccc
Q 041829 258 IAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNT-LIQSLSTNPEFLKNKAS 336 (486)
Q Consensus 258 ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~-~~~~~~~~~~yl~~~~~ 336 (486)
+|+++|+++|+|+||+.+....+..... +..+|++++++||++.+|.+ |++++++... +...-.....|-.....
T Consensus 216 ia~~~g~~livD~ah~~g~~~~~~~~~p---~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~~~~~~g~~~~y~~~~~~ 291 (483)
T 1rv3_A 216 IADENGAYLMADMAHISGLVVAGVVPSP---FEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILYNLESLI 291 (483)
T ss_dssp HHHHTTCEEEEECTTTHHHHHHTSSCCG---GGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBCCHHHHH
T ss_pred HHHHcCCEEEEEccchhcccccCCCCCC---CCCCcEEEecCcccCCCCCc-eEEEEcchhhhhccccCcchhhHHHHHh
Confidence 9999999999999987655432221111 23689999999999999988 9999987521 00000000000000000
Q ss_pred ccCCccCCCCCccCCCCCC-CcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-CceEEEEEecCC
Q 041829 337 QANMVVDYKDWQIPLGRRF-RSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPR-IFSLVCFRLLPP 414 (486)
Q Consensus 337 ~~~~~~~~~~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~-~~~~v~f~~~~~ 414 (486)
.. .... ..+++... ...++..+++.....+++++.++..++++++.+.|++. |++++.+. ....+.+.+.+.
T Consensus 292 ~~-~~~~----~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~ 365 (483)
T 1rv3_A 292 NS-AVFP----GLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSK 365 (483)
T ss_dssp HH-HHTT----TTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGG
T ss_pred hh-hcCC----cccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCCCceEEEeccCC
Confidence 00 0000 01122111 12344566777666788999999999999999999998 99987643 223455555432
Q ss_pred CCCcccchHHHHHHHHHHHccCcEEEE----eee--ECCEeEEEEEecCCCCC----HHHHHHHHHHHHHHHHH
Q 041829 415 HNDEDHGNKLNHKLLDDINSTGKIFIS----HTV--LSGKYILRFAVGAPLTE----WRHVNAAWEVMQDKASA 478 (486)
Q Consensus 415 ~~~~~~~~~~~~~l~~~l~~~g~~~~~----~~~--~~~~~~lRi~~~~~~~t----~~di~~~~~~l~~~~~~ 478 (486)
+ .+ ..++.+.|.+.| +.+. +.. ..+..++|+++ ...+| ++|++++++.|.++.+.
T Consensus 366 g-----~~--~~~~~~~L~~~g-I~v~~~~~pg~~~~~~~~~iRis~-~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 366 G-----TD--GGRAEKVLEACS-IACNKNTCPGDKSALRPSGLRLGT-PALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp T-----CC--HHHHHHHHHHTT-EECEEECCSSCSCTTSCCEEEEEC-HHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred C-----CC--HHHHHHHHHhCC-cEEecCCCCCCCcCCCCceEEeec-CCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 1 11 134555566666 4444 221 11346899999 44555 99999999999988765
No 68
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.93 E-value=2.6e-23 Score=210.65 Aligned_cols=325 Identities=12% Similarity=0.093 Sum_probs=219.2
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCch
Q 041829 107 SWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHS 186 (486)
Q Consensus 107 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~ 186 (486)
.|....+..++++.+.+|+.+.+|.+... .....++++|+|+++..++.+... +++.|+++..+|.
T Consensus 78 ~Y~~~~g~~~lr~~la~~~~~~~g~~~~~---~~~~i~~~~G~~~ai~~~~~~~~~-----------~gd~Vl~~~p~y~ 143 (428)
T 1iay_A 78 NFQDYHGLPEFRKAIAKFMEKTRGGRVRF---DPERVVMAGGATGANETIIFCLAD-----------PGDAFLVPSPYYP 143 (428)
T ss_dssp HCCCTTCCHHHHHHHHHHHHHHTTTCSCC---CTTSCEEEEHHHHHHHHHHHHHCC-----------TTCEEEEESSCCT
T ss_pred CCCCCCCcHHHHHHHHHHHHHhcCCCCCC---ChhhEEEccChHHHHHHHHHHhCC-----------CCCeEEEccCCCc
Confidence 34333357899999999999888843100 012589999999999888776543 5678888999999
Q ss_pred hHHHHH-HHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC---hHHHHHHHHHh
Q 041829 187 ALQKAC-QIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP---LLALGNIAKSN 262 (486)
Q Consensus 187 s~~~a~-~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~---l~~I~~ia~~~ 262 (486)
++...+ ...|+ +++.+|.+.+++|.+|+++|++++++....+.++.+|+++.++|+||.+.| +++|+++|+++
T Consensus 144 ~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~ 220 (428)
T 1iay_A 144 AFNRDLRWRTGV---QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQH 220 (428)
T ss_dssp THHHHTTTTTCC---EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTT
T ss_pred chHHHHHHhcCC---EEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHC
Confidence 887754 36788 999999876445789999999999876545555778888999999999999 99999999999
Q ss_pred CCEEEeeccccchhccCccchhcccCCcC-------CC--ceeeecccccCCC-CcceEEEEeCchHHHHHhcCCccccc
Q 041829 263 GMWFHVDAAYAGSACICPEYRQYIDGVEE-------AD--SFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTNPEFLK 332 (486)
Q Consensus 263 g~~lhvD~A~g~~~~~~~~~~~~~~~~~~-------aD--s~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~~~yl~ 332 (486)
|+++|+|++|+++.+....+.....-... .| .+..++||+++.| ..+|+++..++..... +.....+.
T Consensus 221 ~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~-~~~~~~~~- 298 (428)
T 1iay_A 221 NIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNC-ARKMSSFG- 298 (428)
T ss_dssp TCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHH-HHHHHTTS-
T ss_pred CeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHH-HHHHHhcc-
Confidence 99999999998754321111111000112 57 6788999999744 3478888866543332 21100000
Q ss_pred ccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhCh-----hhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEE
Q 041829 333 NKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGL-----ENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLV 407 (486)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~-----~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v 407 (486)
....+...++...+.. +.+++..++..++++++.+.|+++ ++++..+...+++
T Consensus 299 ---------------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~ 356 (428)
T 1iay_A 299 ---------------------LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFC 356 (428)
T ss_dssp ---------------------CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEE
T ss_pred ---------------------cCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEE
Confidence 0122333334443322 256778888889999999999998 7876543345566
Q ss_pred EEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEee-eEC--CEeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041829 408 CFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHT-VLS--GKYILRFAVGAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 477 (486)
.+++...... .......++.+.|.++ | +.+.+. .+. +..++|+++ . ..+++++++++++|+++.+
T Consensus 357 ~~~~~~~~~~--~~~~~~~~l~~~l~~~~g-i~v~~~~~~~~~~~~~iRis~-~-~~~~e~i~~~~~~l~~~l~ 425 (428)
T 1iay_A 357 WMDLRPLLRE--STFDSEMSLWRVIINDVK-LNVSPGSSFECQEPGWFRVCF-A-NMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp EEECGGGCSS--SSHHHHHHHHHHHHHTSC-EECEEGGGGTCSSSSEEEEEC-S-SSCHHHHHHHHHHHHHHHH
T ss_pred EEechhhcCC--CchhHHHHHHHHHHHhCC-EEEeCchhhCCCCCCEEEEEE-e-cCCHHHHHHHHHHHHHHHh
Confidence 6776431100 0112335688888876 7 544443 222 245899999 4 4799999999999998764
No 69
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.93 E-value=3.3e-24 Score=217.48 Aligned_cols=356 Identities=12% Similarity=0.116 Sum_probs=225.1
Q ss_pred CCcccccCCCCCCHHHHHHHHHHHhcCc----CccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhH
Q 041829 76 SPNYFAYYPSNSSVAGFLGEMLSAGLNI----VGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASE 151 (486)
Q Consensus 76 ~p~~~~~~~~~~~~~~~~~~~l~~~~n~----~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~ 151 (486)
...|+++..+++.++.+ .+.+...+.. +...|..++...++..++.+++++++|.+.+ ..++|+|||+
T Consensus 18 ~~~~Ld~~~~~~~~~~v-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-------~v~~~~g~t~ 89 (432)
T 3a9z_A 18 RKVYMDYNATTPLEPEV-IQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQ-------DIIFTSGGTE 89 (432)
T ss_dssp CCEECBTTTCCCCCHHH-HHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGG-------GEEEESCHHH
T ss_pred CcEEeeCCccCCCCHHH-HHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcC-------eEEEeCChHH
Confidence 34566665444444443 3333333321 1223444556777888999999999998654 5899999999
Q ss_pred HHHHHHHHHHHHHHH---HhCc------cCC-CCeEEEecCCCchhHHHHHHH----hCCCCCCeEEEeCCCCCCCccCH
Q 041829 152 AVLVVLLAARDKALK---RVGK------NSL-EKLVVYASDQTHSALQKACQI----GGIHPQNFRVLKTDSSTNYSLSP 217 (486)
Q Consensus 152 a~~~al~~a~~~~~~---~~~~------~~~-~~~~v~~s~~~H~s~~~a~~~----~g~g~~~v~~v~~~~~~~~~id~ 217 (486)
++..++.++...+.. ..+. .+- ....|+++..+|.|+.++... .|. +++.+|+++. ++.+|+
T Consensus 90 a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~---~v~~v~~~~~-~~~~d~ 165 (432)
T 3a9z_A 90 SNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVA---EVTFVPVSKV-NGQVEV 165 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSC---EEEEECCCTT-TSSCCH
T ss_pred HHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCc---EEEEEecCcc-cCCcCH
Confidence 999988876432110 0000 000 125788899999998766543 577 9999998752 358999
Q ss_pred HHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhC----------CEEEeeccccchhccCccchhccc
Q 041829 218 DSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNG----------MWFHVDAAYAGSACICPEYRQYID 287 (486)
Q Consensus 218 ~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g----------~~lhvD~A~g~~~~~~~~~~~~~~ 287 (486)
++|++++++. +.+|+++.++|+||.+.|+++|.++|+++| +|+|+|++|+.+....+ ...
T Consensus 166 ~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~-~~~--- 235 (432)
T 3a9z_A 166 EDILAAVRPT------TCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVD-VED--- 235 (432)
T ss_dssp HHHHHTCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCC-HHH---
T ss_pred HHHHHhccCC------ceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccC-hhh---
Confidence 9999988642 568999999999999999999999999999 99999999976532211 111
Q ss_pred CCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccC-CCCC-CCcHHHHHHHH
Q 041829 288 GVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIP-LGRR-FRSLKLWMVLR 365 (486)
Q Consensus 288 ~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~-~sr~-~~~l~~~~~l~ 365 (486)
.+.|++++++||+++ |. +|++++++.... ....+.+..... . . ... ++.. .....+..+++
T Consensus 236 --~~~d~~~~s~~K~~g-~~-~G~~~~~~~~~~---~~~~~~~~~~~~-----~---~--~~~~~~~~~~~~~a~~aal~ 298 (432)
T 3a9z_A 236 --LGVDFLTIVGHKFYG-PR-IGALYVRGVGKL---TPLYPMLFGGGQ-----E---R--NFRPGTENTPMIAGLGKAAD 298 (432)
T ss_dssp --HCCSEEEEEGGGTTC-CS-CEEEEETTBTTT---BCCCCSCCSSCG-----G---G--GTSCSCCCHHHHHHHHHHHH
T ss_pred --cCCCEEEEehhHhcC-Cc-ceEEEEcccccc---CCcCceeecCCc-----c---c--cccCCCcCHHHHHHHHHHHH
Confidence 158999999999875 76 999999864311 011111111000 0 0 001 1111 11123334454
Q ss_pred HhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEe--cC----CC-ceEEEEEecCCCCCcccchHHHHHHHHHHH----c
Q 041829 366 LYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVV--TP----RI-FSLVCFRLLPPHNDEDHGNKLNHKLLDDIN----S 434 (486)
Q Consensus 366 ~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~--~~----~~-~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~----~ 434 (486)
.+ .++++++.++..++++++.+.|++++++++. .+ .. .++++|.+...+. + ...+.+.+. +
T Consensus 299 ~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~l~~i~~~ 370 (432)
T 3a9z_A 299 LV-SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQL-----R--GYMVLAQCQTLLAS 370 (432)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTC-----C--HHHHHHHCSSEECB
T ss_pred HH-HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCC-----c--HHHHHHHhcCeEEe
Confidence 43 4578889999999999999999886665443 32 11 2367787753210 1 123333331 1
Q ss_pred cCcEEEEeee---------ECC------EeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 041829 435 TGKIFISHTV---------LSG------KYILRFAVGAPLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 435 ~g~~~~~~~~---------~~~------~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
.|..+ .+.. ..| ..++|+++ +..+|++|+++++++|+++.+++.
T Consensus 371 ~G~~~-~~~~~~~~~~~l~~~g~~~~~~~~~iRis~-~~~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 371 VGASC-HSDHEDRPSPVLLSCGIPVDVARNAVRLSV-GRSTTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp SSCGG-GGGGTTSCCHHHHHTTCCHHHHTTEEEEEC-CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-cCCCCCCccHHHHhcCCCccccCceEEEEc-CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 12111 0000 001 25899999 778899999999999999887654
No 70
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.93 E-value=5e-24 Score=213.80 Aligned_cols=301 Identities=11% Similarity=0.069 Sum_probs=213.1
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHH
Q 041829 112 PAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKA 191 (486)
Q Consensus 112 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a 191 (486)
.+..++.+++.+++++++|.+ ..++|+|||+++..++.++.. +++.|+++...|.++..+
T Consensus 84 ~g~~~~~~~l~~~la~~~g~~---------~v~~~~ggt~a~~~~~~~~~~-----------~gd~V~~~~p~~~~~~~~ 143 (398)
T 3a2b_A 84 NGTLDIHVELEEKLSAYVGKE---------AAILFSTGFQSNLGPLSCLMG-----------RNDYILLDERDHASIIDG 143 (398)
T ss_dssp TCCCHHHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHSSC-----------TTCEEEEETTCCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHhCCC---------cEEEECCHHHHHHHHHHHHhC-----------CCCEEEECCccCHHHHHH
Confidence 345678888889999999974 389999999999988876533 677899999999999999
Q ss_pred HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeecc
Q 041829 192 CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAA 271 (486)
Q Consensus 192 ~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A 271 (486)
++..|. +++.+|. +|+++|++++++... .++.+|+++.++|+||.+.|+++|.++|+++|+++++|++
T Consensus 144 ~~~~g~---~~~~v~~-------~d~~~l~~~l~~~~~--~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~ 211 (398)
T 3a2b_A 144 SRLSFS---KVIKYGH-------NNMEDLRAKLSRLPE--DSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDA 211 (398)
T ss_dssp HHHSSS---EEEEECT-------TCHHHHHHHHHTSCS--SSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECT
T ss_pred HHHcCC---ceEEeCC-------CCHHHHHHHHHhhcc--CCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECC
Confidence 999999 8888874 589999999875321 1367888899999999999999999999999999999999
Q ss_pred ccchhccCccchhcc--cCC-cCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCc
Q 041829 272 YAGSACICPEYRQYI--DGV-EEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQ 348 (486)
Q Consensus 272 ~g~~~~~~~~~~~~~--~~~-~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 348 (486)
|+.+.+. ....... .++ +++|+++.++||+++ |.| |+++.++ +.+........+|...
T Consensus 212 ~~~~~~~-~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~~~~~-~~~~~l~~~~~~~~~~--------------- 272 (398)
T 3a2b_A 212 HSLGVIG-HKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG-GFVAGDA-DVIDFLKHNARSVMFS--------------- 272 (398)
T ss_dssp TTTTTSS-GGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-EEEEECH-HHHHHHHHHCHHHHSS---------------
T ss_pred CcccccC-CCCCchHhhcCCCcCCeEEEeccccccc-CCC-cEEEeCH-HHHHHHHHhcccceec---------------
Confidence 9755321 1111111 122 247999999999998 555 8877753 3332221111122111
Q ss_pred cCCCCCCCcH-HHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHH
Q 041829 349 IPLGRRFRSL-KLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHK 427 (486)
Q Consensus 349 ~~~sr~~~~l-~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~ 427 (486)
++...... .+..+++.+ +.++++.++..++++++.+.|+++ ++++. ++..+++++.+.. .....+
T Consensus 273 --~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~~~~~~--------~~~~~~ 338 (398)
T 3a2b_A 273 --ASMTPASVASTLKALEII--QNEPEHIEKLWKNTDYAKAQLLDH-GFDLG-ATESPILPIFIRS--------NEKTFW 338 (398)
T ss_dssp --BCCCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHT-TCCBC-SCCSSEEEEECCC--------HHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHhc-CCCcC-CCCCCEEEEEcCC--------HHHHHH
Confidence 01011111 223445443 235577888889999999999998 88765 4455677777632 223467
Q ss_pred HHHHHHccCcEEEEeeeE----CCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 428 LLDDINSTGKIFISHTVL----SGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 428 l~~~l~~~g~~~~~~~~~----~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
+.+.|.++| +.+.+... .+..++|+++ +..++++++++++++|+++.+++
T Consensus 339 l~~~l~~~g-i~v~~~~~~~~~~~~~~iRis~-~~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 339 VTKMLQDDG-VFVNPVVSPAVPAEESLIRFSL-MATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp HHHHHHHTT-EECEEECTTTSCGGGCEEEEEC-CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCC-cEEEeeCCCCCCCCCceEEEEE-eCCCCHHHHHHHHHHHHHHHHHh
Confidence 888888887 55544322 1346899999 66789999999999999987654
No 71
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.92 E-value=3.3e-24 Score=217.21 Aligned_cols=338 Identities=11% Similarity=0.039 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHhcCcC-ccccccChhhHHHHHHHHHHHHHHcC--CCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHH
Q 041829 89 VAGFLGEMLSAGLNIV-GFSWITSPAATELEMIVLDWLAKLLK--LPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKAL 165 (486)
Q Consensus 89 ~~~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~la~l~g--~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~ 165 (486)
++..+.+.+...+... ...|...++..++++.+.+++.+. | .+.+ ..++|+|||+|+..++.+..+
T Consensus 72 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~~~-------~v~~t~g~t~al~~~~~~l~~--- 140 (427)
T 3dyd_A 72 TDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCP-EAPLEAK-------DVILTSGCSQAIDLCLAVLAN--- 140 (427)
T ss_dssp CCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBT-TBCCCGG-------GEEEESSHHHHHHHHHHHHCC---
T ss_pred CCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhc-CCCCChH-------HEEEecCcHHHHHHHHHHhcC---
Confidence 3344455554444332 234555566778888844443322 2 3332 589999999999888876543
Q ss_pred HHhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcc
Q 041829 166 KRVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTS 245 (486)
Q Consensus 166 ~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~ 245 (486)
+++.|+++..+|..+...++..|+ +++.+|.++++++.+|+++|++++++. +.+|+++.++|+
T Consensus 141 --------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~np 203 (427)
T 3dyd_A 141 --------PGQNILVPRPGFSLYKTLAESMGI---EVKLYNLLPEKSWEIDLKQLEYLIDEK------TACLIVNNPSNP 203 (427)
T ss_dssp --------TTCEEEEEESCCTHHHHHHHHTTC---EEEEEEEEGGGTTEECHHHHHSSCCTT------EEEEEEESSCTT
T ss_pred --------CCCEEEEcCCCchhHHHHHHHcCC---EEEEEecccccCCCCCHHHHHHHhccC------CCEEEEECCCCC
Confidence 677888999999999999999999 999999876556789999999988643 457888899999
Q ss_pred ccccCC---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCc-CCC-ceeeecccccCCC-CcceEEEEeCc--
Q 041829 246 STAVDP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVE-EAD-SFNMNAHKWFLTN-FDCSALWVKDR-- 317 (486)
Q Consensus 246 tG~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~-~aD-s~~~~~hK~l~~p-~~~g~l~~r~~-- 317 (486)
||.+.| +++|+++|+++|+++++|++|+++......+.. +..+. ..+ .++.+++|.++.| ..+|++++++.
T Consensus 204 tG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~-~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~ 282 (427)
T 3dyd_A 204 CGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEP-LATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRD 282 (427)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCC-GGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTT
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCcc-HHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcch
Confidence 999999 999999999999999999999875532211111 11111 122 4456899986544 45899988864
Q ss_pred ---hHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCC
Q 041829 318 ---NTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDL 394 (486)
Q Consensus 318 ---~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~ 394 (486)
..+...+........ ....+....+..+++....+.++++.++..++++++.+.|+++|
T Consensus 283 ~~~~~i~~~l~~~~~~~~------------------~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 344 (427)
T 3dyd_A 283 IFGNEIRDGLVKLSQRIL------------------GPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIP 344 (427)
T ss_dssp SSHHHHHHHHHHHHHHHC------------------CSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hhHHHHHHHHHHHHhccC------------------CCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 112221111000000 00011223444455544577888999999999999999999999
Q ss_pred CeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHH-ccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHH
Q 041829 395 RFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDIN-STGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQ 473 (486)
Q Consensus 395 ~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~ 473 (486)
+++++.+.....+.+.+....... .....++.++|. +.|..+..+..+...+++|+++ . +++++|++++++|.
T Consensus 345 g~~~~~p~~g~~~~~~l~~~~~~~---~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~-~--~~~e~i~~~l~~l~ 418 (427)
T 3dyd_A 345 GLRPVRPSGAMYLMVGIEMEHFPE---FENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVI-T--VPEVMMLEACSRIQ 418 (427)
T ss_dssp TEEEECCSBTTEEEEEECGGGCTT---CSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEES-C--SCHHHHHHHHHHHH
T ss_pred CceecCCCeeEEEEEecCHhhcCC---CCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEE-C--CCHHHHHHHHHHHH
Confidence 998875554445555654110000 011245666665 5664444433444457999998 3 68999999999999
Q ss_pred HHHHHH
Q 041829 474 DKASAL 479 (486)
Q Consensus 474 ~~~~~l 479 (486)
++++++
T Consensus 419 ~~l~~~ 424 (427)
T 3dyd_A 419 EFCEQH 424 (427)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988765
No 72
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.92 E-value=7.9e-24 Score=212.96 Aligned_cols=334 Identities=14% Similarity=0.091 Sum_probs=221.4
Q ss_pred HHHHHHHHHHhcCcC---ccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHH
Q 041829 90 AGFLGEMLSAGLNIV---GFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALK 166 (486)
Q Consensus 90 ~~~~~~~l~~~~n~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~ 166 (486)
+..+.+.+...+... .. |...++..++++++.+|+.+.+|.+.+ ....++|+|||+++..++.++..
T Consensus 51 ~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~-----~~~v~~t~g~t~a~~~~~~~~~~---- 120 (407)
T 2zc0_A 51 RAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVS-----PENIVITIGGTGALDLLGRVLID---- 120 (407)
T ss_dssp HHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCC-----GGGEEEESHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCC-----cceEEEecCHHHHHHHHHHHhcC----
Confidence 344555554444322 23 555557889999999999888885322 12589999999999988877643
Q ss_pred HhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEE-EEecCCcc
Q 041829 167 RVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFL-CATVGTTS 245 (486)
Q Consensus 167 ~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~v-v~~~~~t~ 245 (486)
+++.|+++..+|.++..+++..|. +++.+|.+++ .+|+++|++++++....+..+.+| +++.++|+
T Consensus 121 -------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~np 187 (407)
T 2zc0_A 121 -------PGDVVITENPSYINTLLAFEQLGA---KIEGVPVDND---GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNP 187 (407)
T ss_dssp -------TTCEEEEEESCCHHHHHHHHTTTC---EEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTT
T ss_pred -------CCCEEEEeCCChHHHHHHHHHcCC---EEEEcccCCC---CCCHHHHHHHHHhhhcccCCceEEEECCCCCCC
Confidence 567788899999999999999999 9999998753 399999999997433232235565 56778999
Q ss_pred ccccCChH---HHHHHHHHhCCEEEeeccccchhccCccchhcccCCc--CCCceeeecccccCCCCcceEEEEeCchHH
Q 041829 246 STAVDPLL---ALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVE--EADSFNMNAHKWFLTNFDCSALWVKDRNTL 320 (486)
Q Consensus 246 tG~id~l~---~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~--~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~ 320 (486)
+|.+.|++ +|+++|++||+++|+|++|+++........ .+..+. ..+.+..+++|+++....+|+++.+ ++..
T Consensus 188 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~ 265 (407)
T 2zc0_A 188 MGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIV-PLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAE-GEIL 265 (407)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCC-CGGGGCSSCCEEEEEESTTTTCTTSCCEEEECC-HHHH
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCC-ChhhcCCCCCEEEEcccccccCCCcceEEEecC-HHHH
Confidence 99998886 999999999999999999987643211111 111121 2335677889999933358888875 3332
Q ss_pred HHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--C--h-hhHHHHHHHHHHHHHHHHHHHhc-CC
Q 041829 321 IQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--G--L-ENLQGYIRNHIQLAKHFEGLVAQ-DL 394 (486)
Q Consensus 321 ~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g--~-~g~~~~~~~~~~~a~~l~~~l~~-~~ 394 (486)
. .+...... ++. ....+..+++...+ + . +.++++.++..++++++.+.|++ .|
T Consensus 266 ~-~~~~~~~~----------------~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 324 (407)
T 2zc0_A 266 K-KVLMQKQP----------------IDF----CAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLP 324 (407)
T ss_dssp H-HHHHHHTT----------------TTS----SSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCT
T ss_pred H-HHHHHHHh----------------hcC----CCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2 22110000 000 11222222222222 2 2 45667777888899999999987 57
Q ss_pred CeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEee-eEC----CEeEEEEEecCCCCCHHHHHHH
Q 041829 395 RFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHT-VLS----GKYILRFAVGAPLTEWRHVNAA 468 (486)
Q Consensus 395 ~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~~~----~~~~lRi~~~~~~~t~~di~~~ 468 (486)
++++..+....++.+++.. + .+ ..++.+.|.++ | +.+.+. .+. +..++|+++ ... +++|++++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~-~-----~~--~~~l~~~l~~~~g-i~v~~g~~~~~~~~~~~~iRis~-~~~-~~~~i~~~ 393 (407)
T 2zc0_A 325 NAEFTKPIAGMFVMFFLPE-G-----AD--GISFANELMEREG-VVVVPGKPFYTDESGKNAIRLNF-SRP-SKEEIPIG 393 (407)
T ss_dssp TSCBCCCSBSSEEEEECST-T-----CC--HHHHHHHHHHHTC-EECBCSGGGCSSSCCTTEEEEEC-SSS-CTTHHHHH
T ss_pred CCEEecCCCcEEEEEEcCC-C-----CC--HHHHHHHHHHhCC-eEEECchhccCCCCCCCeEEEEe-CCC-CHHHHHHH
Confidence 8876544444566677642 1 11 24677788877 7 555443 221 346899999 433 89999999
Q ss_pred HHHHHHHHHHHH
Q 041829 469 WEVMQDKASALL 480 (486)
Q Consensus 469 ~~~l~~~~~~l~ 480 (486)
+++|+++.+++.
T Consensus 394 ~~~l~~~l~~~~ 405 (407)
T 2zc0_A 394 IKKLAKLYKEKF 405 (407)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999887664
No 73
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.92 E-value=2.3e-24 Score=214.36 Aligned_cols=320 Identities=14% Similarity=0.110 Sum_probs=215.8
Q ss_pred HHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccC
Q 041829 93 LGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNS 172 (486)
Q Consensus 93 ~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~ 172 (486)
+.+.+...+... .|...+...++++. +++++|.+. +++++|||+|+..++.+++..
T Consensus 21 ~~~~~~~~~~~~--~~~~~~~~~~l~~~----la~~~~~~~---------~~~~~~gt~a~~~~~~~~~~~--------- 76 (374)
T 3uwc_A 21 YLNDLREFIKTA--DFTLGAELEKFEKR----FAALHNAPH---------AIGVGTGTDALAMSFKMLNIG--------- 76 (374)
T ss_dssp HHHHHHHHHHHT--CCSSCHHHHHHHHH----HHHHTTCSE---------EEEESCHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHcC--CcccChhHHHHHHH----HHHHhCCCc---------EEEeCCHHHHHHHHHHHcCCC---------
Confidence 555555544332 34456677777776 888888763 799999999998887765211
Q ss_pred CCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCCh
Q 041829 173 LEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPL 252 (486)
Q Consensus 173 ~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l 252 (486)
+++.|+++..+|.++..+++..|+ +++.+|++. ++.+|+++|++++++. +.+|+ +++++|.+.|+
T Consensus 77 -~gd~v~~~~~~~~~~~~~~~~~g~---~~~~~~~~~--~~~~d~~~l~~~~~~~------~~~v~---~~n~~G~~~~~ 141 (374)
T 3uwc_A 77 -AGDEVITCANTFIASVGAIVQAGA---TPVLVDSEN--GYVIDPEKIEAAITDK------TKAIM---PVHYTGNIADM 141 (374)
T ss_dssp -TTCEEEEESSSCHHHHHHHHHTTC---EEEEECBCT--TSSBCGGGTGGGCCTT------EEEEC---CBCGGGCCCCH
T ss_pred -CCCEEEECCCccHHHHHHHHHcCC---EEEEEecCC--CCCcCHHHHHHhCCCC------ceEEE---EeCCcCCcCCH
Confidence 677899999999999999999999 999999983 4799999999988653 33444 77899999999
Q ss_pred HHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecc--cccCCCCcceEEEEeCchHHHHHhcCCccc
Q 041829 253 LALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAH--KWFLTNFDCSALWVKDRNTLIQSLSTNPEF 330 (486)
Q Consensus 253 ~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~h--K~l~~p~~~g~l~~r~~~~~~~~~~~~~~y 330 (486)
++|.++|+++|+++|+|++|+.+..+..... + ...|.+++++| |+++.+..+|+++.+++.............
T Consensus 142 ~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~----~-~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~ 216 (374)
T 3uwc_A 142 PALAKIAKKHNLHIVEDACQTILGRINDKFV----G-SWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHG 216 (374)
T ss_dssp HHHHHHHHHTTCEEEEECTTCTTCEETTEET----T-SSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTT
T ss_pred HHHHHHHHHcCCEEEEeCCCccCceeCCeec----c-ccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcC
Confidence 9999999999999999999986543321111 0 13699999987 999774457777777654332221111100
Q ss_pred ccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCC-eEEecCCCc---eE
Q 041829 331 LKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLR-FEVVTPRIF---SL 406 (486)
Q Consensus 331 l~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~-~~~~~~~~~---~~ 406 (486)
... .+. ....+.......+.+++.....++++++.++..++++++.+.|+++++ +++...+.. ..
T Consensus 217 ~~~---------~~~--~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 285 (374)
T 3uwc_A 217 LIN---------RDV--CVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVF 285 (374)
T ss_dssp EEE---------TTE--ESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCC
T ss_pred ccc---------cCc--cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceee
Confidence 000 000 001111222334445555555677888999999999999999999988 887543321 11
Q ss_pred EEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeee---E------C---------------CEeEEEEEecCCCCCH
Q 041829 407 VCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTV---L------S---------------GKYILRFAVGAPLTEW 462 (486)
Q Consensus 407 v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~------~---------------~~~~lRi~~~~~~~t~ 462 (486)
+.|.+... ...++.+.|.++|.. +.+.. . . ....+|+++ ++.+|+
T Consensus 286 ~~~~~~~~---------~~~~l~~~L~~~gi~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~-~~~~t~ 354 (374)
T 3uwc_A 286 HIYVLRVK---------YRDQLFQYLKDNGIE-VKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPA-HPYLTE 354 (374)
T ss_dssp SSEEEEET---------THHHHHHHHHHTTBC-CBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECC-CTTSCH
T ss_pred EEEEEEcC---------CHHHHHHHHHHCCCc-cccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccC-CCCCCH
Confidence 22222211 124677777777743 33221 0 0 126899999 899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 041829 463 RHVNAAWEVMQDKASA 478 (486)
Q Consensus 463 ~di~~~~~~l~~~~~~ 478 (486)
+||++++++|+++.++
T Consensus 355 edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 355 EEINYIIKKVREFYLE 370 (374)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988753
No 74
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.92 E-value=8.8e-24 Score=210.67 Aligned_cols=327 Identities=9% Similarity=0.014 Sum_probs=218.6
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCc
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGK 170 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 170 (486)
..+.+.+...+......|... ..++++++.+++++.+|.+.+ ....++|+|||+++..++.+...
T Consensus 40 ~~v~~a~~~~~~~~~~~y~~~--~~~~~~~l~~~l~~~~g~~~~-----~~~v~~~~g~~~a~~~~~~~l~~-------- 104 (383)
T 3kax_A 40 QPIQTALKKRIEHPIFGYTLP--PENIGDIICNWTKKQYNWDIQ-----KEWIVFSAGIVPALSTSIQAFTK-------- 104 (383)
T ss_dssp HHHHHHHHHHHHSCCCCCCCC--CTTHHHHHHHHHHHHHCCCCC-----GGGEEEESCHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHHHHHHhCCCCC-----hhhEEEcCCHHHHHHHHHHHhCC--------
Confidence 344444544444333333322 578999999999999994321 12589999999999888876533
Q ss_pred cCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCC-CCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 171 NSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSS-TNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 171 ~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~-~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++.|+++..+|.++...++..|. +++.+|++++ ++|.+|+++|+++++++ +.+|+++.++|++|.+
T Consensus 105 ---~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~ 172 (383)
T 3kax_A 105 ---ENESVLVQPPIYPPFFEMVTTNNR---QLCVSPLQKQNDTYAIDFEHLEKQFQQG------VKLMLLCSPHNPIGRV 172 (383)
T ss_dssp ---TTCEEEECSSCCHHHHHHHHHTTC---EEEECCCEEETTEEECCHHHHHHHHTTT------CCEEEEESSBTTTTBC
T ss_pred ---CCCEEEEcCCCcHHHHHHHHHcCC---EEEeccceecCCcEEEcHHHHHHHhCcC------CeEEEEeCCCCCCCcC
Confidence 677899999999999999999999 9999998743 24679999999999332 4577889999999999
Q ss_pred CC---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCC---cCCCceeeecccccC-CCCcceEEEEeCchHHHH
Q 041829 250 DP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGV---EEADSFNMNAHKWFL-TNFDCSALWVKDRNTLIQ 322 (486)
Q Consensus 250 d~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~---~~aDs~~~~~hK~l~-~p~~~g~l~~r~~~~~~~ 322 (486)
-| +++|+++|+++|+++|+|++|+.+.............. ...+.++.++||+++ ....+|+++..++.....
T Consensus 173 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~ 252 (383)
T 3kax_A 173 WKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQASIIIIPNEKLRQA 252 (383)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCcchhheEEEeCCHHHHHH
Confidence 66 56667779999999999999986543221111111100 133467888999997 445678887765543322
Q ss_pred HhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--ChhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEe
Q 041829 323 SLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--GLENLQGYIRNHIQLAKHFEGLVAQ-DLRFEVV 399 (486)
Q Consensus 323 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~l~~-~~~~~~~ 399 (486)
.......+. ......+..+++...+ +.+.++++.++..++++++.+.|++ +|++++.
T Consensus 253 ~~~~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 312 (383)
T 3kax_A 253 FTSIQYRQG--------------------FHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVM 312 (383)
T ss_dssp HHHHHHHTT--------------------CCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEC
T ss_pred HHHHHhhcc--------------------cCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEe
Confidence 111000000 0011233334444433 3556788888999999999999988 8999887
Q ss_pred cCCCceEEE-EEecCCCCCcccchHHHHHHHHHHH-ccCcEEEEee-eE--CCEeEEEEEecCCCCCHHHHHHHHHHHHH
Q 041829 400 TPRIFSLVC-FRLLPPHNDEDHGNKLNHKLLDDIN-STGKIFISHT-VL--SGKYILRFAVGAPLTEWRHVNAAWEVMQD 474 (486)
Q Consensus 400 ~~~~~~~v~-f~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~-~~--~~~~~lRi~~~~~~~t~~di~~~~~~l~~ 474 (486)
. +..+++. +.+...+ . ...++.+.|. +.| +.+.+. .+ .+..++|+++ . ++++++++++++|++
T Consensus 313 ~-~~~~~~~~~~~~~~~-----~--~~~~~~~~l~~~~g-i~v~~g~~~~~~~~~~iRi~~-~--~~~~~i~~~l~~l~~ 380 (383)
T 3kax_A 313 K-PEGSFLLWIDCSALN-----L--SQDERTKLLEEKGK-IIVEPGEKYGLGGEEHIGINI-G--CPRSVLEEILNRLRH 380 (383)
T ss_dssp C-CSBSSEEEEECGGGC-----C--CHHHHHHHHHHTSC-EECEESGGGCTTCTTEEEEEC-S--SCHHHHHHHHHHHHH
T ss_pred c-CCceEEEEEEccccC-----C--CHHHHHHHHHhhCC-EEeECchhhcCCCCCeEEEEE-c--CCHHHHHHHHHHHHH
Confidence 4 4444444 5554311 1 1256778887 456 555543 22 2347899998 3 489999999999987
Q ss_pred HH
Q 041829 475 KA 476 (486)
Q Consensus 475 ~~ 476 (486)
+.
T Consensus 381 ~l 382 (383)
T 3kax_A 381 TF 382 (383)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 75
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.92 E-value=4.2e-25 Score=219.74 Aligned_cols=323 Identities=14% Similarity=0.041 Sum_probs=213.4
Q ss_pred HHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhC
Q 041829 90 AGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVG 169 (486)
Q Consensus 90 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 169 (486)
...+.+.+...+... .|..++...++|++ +++++|.+. +++++|||+|+..++.++...
T Consensus 16 ~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~----la~~~~~~~---------~i~~~sgt~al~~~l~~l~~~------ 74 (373)
T 3frk_A 16 EYEIKFKFEEIYKRN--WFILGDEDKKFEQE----FADYCNVNY---------CIGCGNGLDALHLILKGYDIG------ 74 (373)
T ss_dssp HHHHHHHHHHHHHHT--CCSSSHHHHHHHHH----HHHHHTSSE---------EEEESCHHHHHHHHHHHTTCC------
T ss_pred CHHHHHHHHHHHHCC--CccCCchHHHHHHH----HHHHhCCCe---------EEEeCCHHHHHHHHHHHcCCC------
Confidence 334444444444332 24556777788877 788888753 799999999999888765211
Q ss_pred ccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 170 KNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 170 ~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++.|+++..+|.++..+++..|+ +++.+|++++ ++.+|+++|+++++++ +.+|+ +++++|.+
T Consensus 75 ----~gd~Vi~~~~~~~~~~~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~l~~~------~~~v~---~~n~~G~~ 137 (373)
T 3frk_A 75 ----FGDEVIVPSNTFIATALAVSYTGA---KPIFVEPDIR-TYNIDPSLIESAITEK------TKAII---AVHLYGQP 137 (373)
T ss_dssp ----TTCEEEEETTSCTHHHHHHHHHSC---EEEEECEETT-TTEECGGGTGGGCCTT------EEEEE---EECCTTCC
T ss_pred ----CcCEEEECCCCcHHHHHHHHHcCC---EEEEEecccc-ccCcCHHHHHHhcCCC------CeEEE---EECCCcCc
Confidence 677899999999999999999999 9999999854 4799999999988653 34555 56789999
Q ss_pred CChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeee--cccccCCCCcceEEEEeCchHHHHHhcCC
Q 041829 250 DPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMN--AHKWFLTNFDCSALWVKDRNTLIQSLSTN 327 (486)
Q Consensus 250 d~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~--~hK~l~~p~~~g~l~~r~~~~~~~~~~~~ 327 (486)
.|+++|.++|+++|+++|+|+||+.+...... .. + ...|.++++ +||+++++..+|+++.+++....+.....
T Consensus 138 ~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~--~~--~-~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~ 212 (373)
T 3frk_A 138 ADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGM--KV--G-SLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALS 212 (373)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTCTTCEETTE--ET--T-SSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCEEEEECCcccCCEECCE--ec--c-ccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999865442211 11 1 125877777 77999774456777776654332211100
Q ss_pred cccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC---c
Q 041829 328 PEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRI---F 404 (486)
Q Consensus 328 ~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~---~ 404 (486)
.... .. .+. ....+..+....+.+++.....++++++.++..++++++.+.|++++ +++...+. .
T Consensus 213 ~~g~-~~--------~~~--~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~ 280 (373)
T 3frk_A 213 NYGS-EK--------KYH--HIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKH 280 (373)
T ss_dssp BTTC-SB--------TTB--CCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEEC
T ss_pred hcCc-cc--------CCc--cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCce
Confidence 0000 00 000 01112223333445555544567788889999999999999999986 77643221 1
Q ss_pred eEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeee---EC---------------------CEeEEEEEecCCCC
Q 041829 405 SLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTV---LS---------------------GKYILRFAVGAPLT 460 (486)
Q Consensus 405 ~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~---------------------~~~~lRi~~~~~~~ 460 (486)
+.+.|.+... ....+.+.|.++|. .+.... .. ....+|+++ ++.+
T Consensus 281 ~~~~~~~~~~---------~~~~l~~~L~~~gI-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~-~~~~ 349 (373)
T 3frk_A 281 VWYTFVIRSE---------KRDELQKYLNNNGI-GTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPI-WYGM 349 (373)
T ss_dssp CCSSEEEEES---------SHHHHHHHHHHTTB-CCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECC-CTTC
T ss_pred eeEEEEEEeC---------CHHHHHHHHHHCCC-CcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccC-CCCC
Confidence 1122222211 12467777877774 333211 00 016899999 9999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 041829 461 EWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 461 t~~di~~~~~~l~~~~~~ 478 (486)
|++||++++++|+++..+
T Consensus 350 t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 350 KNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp CHHHHHHHHHHHHTCC--
T ss_pred CHHHHHHHHHHHHHHhhh
Confidence 999999999999876543
No 76
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.92 E-value=1.9e-23 Score=210.34 Aligned_cols=291 Identities=16% Similarity=0.121 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHhC
Q 041829 117 LEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIGG 196 (486)
Q Consensus 117 le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g 196 (486)
...++.+++++++|.+. .+++++||++|..++.+... +++.|+++...|.++..+++..|
T Consensus 105 ~~~~l~~~la~~~g~~~---------~i~~~sGt~a~~~~l~~~~~-----------~gd~Vl~~~~~~~~~~~~~~~~g 164 (409)
T 3kki_A 105 DKPMIEKRLAKFTGFDE---------CLLSQSGWNANVGLLQTICQ-----------PNTNVYIDFFAHMSLWEGARYAN 164 (409)
T ss_dssp TSCHHHHHHHHHHTCSE---------EEEESCHHHHHHHHHHHHCC-----------TTCEEEEETTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCe---------EEEecchHHHHHHHHHHhcC-----------CCCEEEECCCcCHHHHHHHHHcC
Confidence 33445556888888765 46677789999888776543 67889999999999999999999
Q ss_pred CCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchh
Q 041829 197 IHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSA 276 (486)
Q Consensus 197 ~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~ 276 (486)
. +++.++ .+|+++|++++++.. +.+|+++.+++++|.+.|+++|.++|++||+++++|++|+++.
T Consensus 165 ~---~~~~~~-------~~d~~~le~~l~~~~-----~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~ 229 (409)
T 3kki_A 165 A---QAHPFM-------HNNCDHLRMLIQRHG-----PGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGT 229 (409)
T ss_dssp C---EEEEEC-------TTCHHHHHHHHHHHC-----SCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred C---eEEEec-------CCCHHHHHHHHHhcC-----CeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccc
Confidence 8 777665 368999999998642 3588899999999999999999999999999999999997644
Q ss_pred ccCccchhc--ccCC-cCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCC
Q 041829 277 CICPEYRQY--IDGV-EEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGR 353 (486)
Q Consensus 277 ~~~~~~~~~--~~~~-~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr 353 (486)
+. +..... ..++ ...|.++.+++|+++.+ .|+++.++. ..........++... .+.
T Consensus 230 ~g-~~g~~~~~~~~~~~~~di~~~s~sK~~~~~--gg~v~~~~~-~~~~~~~~~~~~~~~-----------------~~~ 288 (409)
T 3kki_A 230 HG-PNGAGLLAELGLTREVHFMTASLAKTFAYR--AGAIWCNNE-VNRCVPFISYPAIFS-----------------STL 288 (409)
T ss_dssp SS-GGGCCHHHHHTCGGGCSEEEEESSSTTCSS--CEEEEESSS-GGGTHHHHCHHHHHS-----------------BCC
T ss_pred cC-CCCCcchhhcCCCCCCCEEEeecchhhCCC--ceEEEECHH-HHHHHHHhCcCcccc-----------------CCC
Confidence 31 111110 1112 35789999999999876 466666543 221111111122111 010
Q ss_pred C-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHH
Q 041829 354 R-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDI 432 (486)
Q Consensus 354 ~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l 432 (486)
. ....++.++++... ..+++.++..++++++.+.|+++ ++++. +..+++.+.+.. .....++.+.|
T Consensus 289 ~~~~~aa~~aal~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~--------~~~~~~~~~~L 355 (409)
T 3kki_A 289 LPYEAAGLETTLEIIE--SADNRRQHLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGD--------ERNTEKVRDYL 355 (409)
T ss_dssp CHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEES--------HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCC--------HHHHHHHHHHH
Confidence 0 11123334444332 12567778889999999999998 77765 355677777653 22345688888
Q ss_pred HccCcEEEEeee----ECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 433 NSTGKIFISHTV----LSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 433 ~~~g~~~~~~~~----~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
.++| +.+.+.. ..+..++|+++ +..+|++||++++++|+++.+.
T Consensus 356 ~~~G-v~v~~~~~~~~~~~~~~iRi~~-~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 356 ESNG-VFGSVFCRPATSKNKNIIRLSL-NSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp HHTT-EECEEECTTSSCTTCEEEEEEC-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHCC-ceEeeeCCCCcCCCCcEEEEEc-cCCCCHHHHHHHHHHHHHHHhc
Confidence 8887 4444332 23567999999 7788999999999999988764
No 77
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.92 E-value=1.9e-23 Score=209.02 Aligned_cols=330 Identities=11% Similarity=0.011 Sum_probs=220.5
Q ss_pred HHHHHHHHHHhcCcCccccccChhhHH-HHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHh
Q 041829 90 AGFLGEMLSAGLNIVGFSWITSPAATE-LEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRV 168 (486)
Q Consensus 90 ~~~~~~~l~~~~n~~~~~~~~~~~~~~-le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 168 (486)
+..+.+.+...++.....|... ..+ +++++.+|+.+.+|.+.+ ....++|+|||+++..++.+...
T Consensus 43 ~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~-----~~~v~~t~g~~~al~~~~~~l~~------ 109 (390)
T 1d2f_A 43 APCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAID-----SQTVVYGPSVIYMVSELIRQWSE------ 109 (390)
T ss_dssp CHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCC-----GGGEEEESCHHHHHHHHHHHSSC------
T ss_pred CHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCC-----HHHEEEcCCHHHHHHHHHHHhcC------
Confidence 3445555655555433344333 567 999999999998884322 12589999999998888776432
Q ss_pred CccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCC-CCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccc
Q 041829 169 GKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSST-NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSST 247 (486)
Q Consensus 169 ~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~-~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG 247 (486)
+++.|++...+|.++..+++..|. +++.+|+++++ +|.+|+++|++++++. .+.+|+++.++|+||
T Consensus 110 -----~gd~vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~l~~p~nptG 176 (390)
T 1d2f_A 110 -----TGEGVVIHTPAYDAFYKAIEGNQR---TVMPVALEKQADGWFCDMGKLEAVLAKP-----ECKIMLLCSPQNPTG 176 (390)
T ss_dssp -----TTCEEEEEESCCHHHHHHHHHTTC---EEEEEECEECSSSEECCHHHHHHHHTST-----TEEEEEEESSCTTTC
T ss_pred -----CCCEEEEcCCCcHHHHHHHHHCCC---EEEEeecccCCCccccCHHHHHHHhccC-----CCeEEEEeCCCCCCC
Confidence 567888899999999999999999 99999987542 4679999999998641 256778889999999
Q ss_pred ccCC---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCc-CC-CceeeecccccCCC-CcceEEEEeCchHHH
Q 041829 248 AVDP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVE-EA-DSFNMNAHKWFLTN-FDCSALWVKDRNTLI 321 (486)
Q Consensus 248 ~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~-~a-Ds~~~~~hK~l~~p-~~~g~l~~r~~~~~~ 321 (486)
.+-| +++|+++|+++|+++++|++|+.+.......... ..+. .. |. ..+++|+++.| ..+|+++++++....
T Consensus 177 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~-~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~ 254 (390)
T 1d2f_A 177 KVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPW-SNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRD 254 (390)
T ss_dssp CCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCG-GGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHH
T ss_pred cCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCH-HHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHH
Confidence 9966 8999999999999999999998754321111111 1121 22 55 88899999743 457999887654332
Q ss_pred HHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHH---HHHHHhChhhHHHHHHHHHHHHHHHHHHHhc-CCCeE
Q 041829 322 QSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLW---MVLRLYGLENLQGYIRNHIQLAKHFEGLVAQ-DLRFE 397 (486)
Q Consensus 322 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~-~~~~~ 397 (486)
.......... ..+ ....+..+ .+++. +.+.+++..++..++++++.+.|++ +|+++
T Consensus 255 ~~~~~~~~~~------------------~~~-~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 314 (390)
T 1d2f_A 255 AYLSALKGRD------------------GLS-SPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELN 314 (390)
T ss_dssp HHHHHHHTTS------------------CCC-SCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHhhhc------------------ccC-CCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence 2111000000 000 11222333 33332 4567788888899999999999998 78887
Q ss_pred EecCCCceEE-EEEecCCCCCcccchHHHHHHHHHHH-ccCcEEEEee-eEC--CEeEEEEEecCCCCCHHHHHHHHHHH
Q 041829 398 VVTPRIFSLV-CFRLLPPHNDEDHGNKLNHKLLDDIN-STGKIFISHT-VLS--GKYILRFAVGAPLTEWRHVNAAWEVM 472 (486)
Q Consensus 398 ~~~~~~~~~v-~f~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~-~~~--~~~~lRi~~~~~~~t~~di~~~~~~l 472 (486)
+. ++..+++ .+.+...+ .+ ..++.+.|. +.| +.+.+. .+. +..++|+++. . ++++++++++.|
T Consensus 315 ~~-~~~~~~~~~~~~~~~~-----~~--~~~l~~~l~~~~g-i~v~~g~~f~~~~~~~~Ris~~-~--~~~~l~~~l~~l 382 (390)
T 1d2f_A 315 WQ-IPQSTYLAWLDLRPLN-----ID--DNALQKALIEQEK-VAIMPGYTYGEEGRGFVRLNAG-C--PRSKLEKGVAGL 382 (390)
T ss_dssp CC-CCSBCSEEEEECGGGC-----CC--HHHHHHHHHHTTC-EECEEGGGGCGGGTTEEEEECC-S--CHHHHHHHHHHH
T ss_pred Ee-cCCccEEEEEEccccC-----CC--HHHHHHHHHHHcC-EEeeCccccCCCCCCeEEEEec-C--CHHHHHHHHHHH
Confidence 65 4444444 45654210 01 246778887 467 444443 222 3468999993 3 578999999999
Q ss_pred HHHHHHH
Q 041829 473 QDKASAL 479 (486)
Q Consensus 473 ~~~~~~l 479 (486)
.++.+++
T Consensus 383 ~~~l~~~ 389 (390)
T 1d2f_A 383 INAIRAV 389 (390)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8887653
No 78
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.92 E-value=6.2e-24 Score=214.64 Aligned_cols=321 Identities=12% Similarity=0.051 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHH
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQI 194 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 194 (486)
.++.+++.+++++++|.+. .+++++||+|+..++.+++.. +++.|+++..+|.++..+++.
T Consensus 41 ~~l~~~l~~~la~~~g~~~---------~i~~~~gt~al~~~~~~~~~~----------~gd~Vl~~~~~~~~~~~~~~~ 101 (418)
T 2c81_A 41 ESMERKFAKAFADFNGVPY---------CVPTTSGSTALMLALEALGIG----------EGDEVIVPSLTWIATATAVLN 101 (418)
T ss_dssp CCHHHHHHHHHHHHHTCSE---------EEEESCHHHHHHHHHHHTTCC----------TTCEEEEESSSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCc---------EEEeCCHHHHHHHHHHHcCCC----------CcCEEEECCCccHhHHHHHHH
Confidence 4445556666999999863 688888999998888765211 567899999999999999999
Q ss_pred hCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccc
Q 041829 195 GGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAG 274 (486)
Q Consensus 195 ~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~ 274 (486)
.|+ +++.+|++++ ++.+|+++|+++++++ +.+|++ ++++|.+.|+++|.++|+++|+++|+|++|+.
T Consensus 102 ~g~---~~~~~~~~~~-~~~~d~~~l~~~i~~~------~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~ 168 (418)
T 2c81_A 102 VNA---LPVFVDVEAD-TYCIDPQLIKSAITDK------TKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSH 168 (418)
T ss_dssp TTC---EEEEECBCTT-TCSBCHHHHGGGCCTT------EEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCT
T ss_pred cCC---EEEEEecCCC-CCCcCHHHHHHhhCCC------CeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccc
Confidence 999 9999999863 4799999999988643 345554 35789999999999999999999999999987
Q ss_pred hhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCccccccccc-ccCCccCCCC-----Cc
Q 041829 275 SACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKAS-QANMVVDYKD-----WQ 348 (486)
Q Consensus 275 ~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~-~~~~~~~~~~-----~~ 348 (486)
+..+... . +..+..+++.++++||+++.+ .+|+++.+++....+..... .+...... .......+.+ ..
T Consensus 169 ~~~~~~~--~-~~~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (418)
T 2c81_A 169 GSVWNNQ--R-AGTIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLR-ADSRVYCDDSSELMHGDMQLVKKGDI 243 (418)
T ss_dssp TCEETTE--E-TTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHH-BTTEEECSCGGGCCTTCBSEEECCSS
T ss_pred cCccCCE--e-cccccceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHH-HhCccccccccccccchhhccccccc
Confidence 6532111 1 111223556666679999874 67777765554332221110 00000000 0000000000 00
Q ss_pred cCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCc------eEEEEEecCCCCCcccch
Q 041829 349 IPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIF------SLVCFRLLPPHNDEDHGN 422 (486)
Q Consensus 349 ~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~------~~v~f~~~~~~~~~~~~~ 422 (486)
+..+.+...+..+..+. ..+.++++.++..++++++.+.|+++|++++..++.. .++++.+....... .+
T Consensus 244 ~g~~~~~~~~~aa~~~~--~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 319 (418)
T 2c81_A 244 QGSNYCLSEFQSAILLD--QLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGG--LN 319 (418)
T ss_dssp CCCBCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTT--CC
T ss_pred cCcCCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccccc--cC
Confidence 11122223333333222 3456788888999999999999999999998744432 35556664200000 11
Q ss_pred HHHHHHHHHHHcc-CcEE--EEeee--EC--------------------------C---------EeEEEEEecCCCC-C
Q 041829 423 KLNHKLLDDINST-GKIF--ISHTV--LS--------------------------G---------KYILRFAVGAPLT-E 461 (486)
Q Consensus 423 ~~~~~l~~~l~~~-g~~~--~~~~~--~~--------------------------~---------~~~lRi~~~~~~~-t 461 (486)
..++.+.|.++ |... +.... .. + ..++|+++ ++.+ |
T Consensus 320 --~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~-~~~~gt 396 (418)
T 2c81_A 320 --ADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHH-AILLAE 396 (418)
T ss_dssp --HHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEG-GGGGSC
T ss_pred --HHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecC-CccCCC
Confidence 24677777777 7440 33211 00 1 25899999 8899 9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041829 462 WRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 462 ~~di~~~~~~l~~~~~~l 479 (486)
++||++++++|+++.+++
T Consensus 397 ~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 397 PSHLSLLVDAVAELARKF 414 (418)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999987653
No 79
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.92 E-value=1.7e-24 Score=216.72 Aligned_cols=308 Identities=13% Similarity=0.120 Sum_probs=208.7
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHH
Q 041829 110 TSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQ 189 (486)
Q Consensus 110 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 189 (486)
.++...++++. +++++|.+. +++++|||+|+..++.+++.. +++.|+++..+|.++.
T Consensus 54 ~~~~~~~l~~~----la~~~~~~~---------~i~~~~gt~al~~~l~~~~~~----------~gd~vl~~~~~~~~~~ 110 (391)
T 3dr4_A 54 VGRFIVEFEKA----FADYCGVKH---------AIACNNGTTALHLALVAMGIG----------PGDEVIVPSLTYIASA 110 (391)
T ss_dssp CSHHHHHHHHH----HHHHHTCSE---------EEEESSHHHHHHHHHHHHTCC----------TTCEEEEESSSCTHHH
T ss_pred CChHHHHHHHH----HHHHhCCCc---------EEEeCCHHHHHHHHHHHcCCC----------CcCEEEECCCchHHHH
Confidence 46677777777 788888763 799999999999888765211 6778999999999999
Q ss_pred HHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEee
Q 041829 190 KACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVD 269 (486)
Q Consensus 190 ~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD 269 (486)
.+++..|+ +++.+|++++ ++.+|+++|+++++++ +.+|+ +++++|.+.|+++|+++|+++|+++|+|
T Consensus 111 ~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~~~~~------~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D 177 (391)
T 3dr4_A 111 NSVTYCGA---TPVLVDNDPR-TFNLDAAKLEALITPR------TKAIM---PVHLYGQICDMDPILEVARRHNLLVIED 177 (391)
T ss_dssp HHHHHTTC---EEEEECBCTT-TCSBCGGGSGGGCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHCCC---EEEEEecCcc-ccCcCHHHHHHhcCCC------ceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEE
Confidence 99999999 9999999864 4799999999988643 33444 4679999999999999999999999999
Q ss_pred ccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCcc
Q 041829 270 AAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQI 349 (486)
Q Consensus 270 ~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 349 (486)
+||+.+....+... ..+..+++++++.||+++++ .+|+++.+++.......... .+-.. .. ...+..
T Consensus 178 ~a~~~g~~~~~~~~---~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~-~~g~~----~~----~~~~~~ 244 (391)
T 3dr4_A 178 AAEAVGATYRGKKS---GSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLR-GQGMD----PN----RRYWFP 244 (391)
T ss_dssp CTTCTTCEETTEET---TSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHH-BTTCC----TT----STTCCS
T ss_pred CcccccceECCeee---cccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHH-hcCCC----CC----Cccccc
Confidence 99986554332211 11123455566688999764 46777676654332211100 00000 00 000011
Q ss_pred CCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--C-----CceEEEEEecCCCCCcccch
Q 041829 350 PLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTP--R-----IFSLVCFRLLPPHNDEDHGN 422 (486)
Q Consensus 350 ~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~--~-----~~~~v~f~~~~~~~~~~~~~ 422 (486)
..+..+....+.+++.....++++++.++..++++++.+.|+++ ++++..+ + ...++.+.+.... .
T Consensus 245 ~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~------~ 317 (391)
T 3dr4_A 245 IVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEGL------S 317 (391)
T ss_dssp SCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSSC------S
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCcc------c
Confidence 12223334455555555556778889999999999999999998 8887654 2 2234566654210 0
Q ss_pred HHHHHHHHHHHccCcEEEEeee--------E-------------CCEeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 423 KLNHKLLDDINSTGKIFISHTV--------L-------------SGKYILRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 423 ~~~~~l~~~l~~~g~~~~~~~~--------~-------------~~~~~lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
....++.+.|.++|... .+.. + .....+|+++ ++.+|++||++++++|+++
T Consensus 318 ~~~~~l~~~L~~~GI~v-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~-~~~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 318 TTRDQVIKDLDALGIES-RPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPT-HAGLTEADIDRVIAALDQV 389 (391)
T ss_dssp SCHHHHHHHHHHTTCCC-EECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECC-CTTCCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHCCCce-eecCCccccChhhhhcCcCCChHHHHHHhCeEEccC-CCCCCHHHHHHHHHHHHHH
Confidence 11256788888888443 3221 0 0135899998 8999999999999999765
No 80
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.92 E-value=8e-24 Score=211.45 Aligned_cols=327 Identities=12% Similarity=0.078 Sum_probs=221.3
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCC-CeEEcCchhHHHHHHHHHHHHHHHHHhC
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQG-GGVIQGTASEAVLVVLLAARDKALKRVG 169 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~~~ 169 (486)
..+.+.+...+......|...++..++++++.+|+.+.+|.+.+ .. ..++|+|||+++..++.+...
T Consensus 46 ~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~-----~~~~v~~~~g~~~a~~~~~~~~~~------- 113 (386)
T 1u08_A 46 RYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPD-----ADSDITVTAGATEALYAAITALVR------- 113 (386)
T ss_dssp HHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCC-----TTTTEEEESSHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCC-----CCCCEEEcCChHHHHHHHHHHhCC-------
Confidence 44555555555432334555556889999999999999886532 12 489999999999888776532
Q ss_pred ccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 170 KNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 170 ~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++.|+++..+|.++...++..|. +++.+|.+.+ ++.+|+++|++++++ .+.+|+++.++|++|.+
T Consensus 114 ----~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~ 179 (386)
T 1u08_A 114 ----NGDEVICFDPSYDSYAPAIALSGG---IVKRMALQPP-HFRVDWQEFAALLSE------RTRLVILNTPHNPSATV 179 (386)
T ss_dssp ----TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECCTT-TCCCCHHHHHHHCCT------TEEEEEEESSCTTTCCC
T ss_pred ----CCCEEEEeCCCchhHHHHHHHcCC---EEEEeecCcc-cCcCCHHHHHHhhcc------cCEEEEEeCCCCCCCcc
Confidence 567888899999999999999999 9999999764 478999999998853 25678888999999999
Q ss_pred CC---hHHHHHHHHHhCCEEEeeccccchhccCccchhccc--CCcCCCceeeecccccCCC-CcceEEEEeCchHHHHH
Q 041829 250 DP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYID--GVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQS 323 (486)
Q Consensus 250 d~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~--~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~ 323 (486)
-| +++|+++|+++|+++++|++|+.+............ +....|.++.++||+++.| ..+|++++++ +.. +.
T Consensus 180 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~-~~ 257 (386)
T 1u08_A 180 WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA-PIS-AE 257 (386)
T ss_dssp CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH-HHH-HH
T ss_pred CCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCH-HHH-HH
Confidence 65 789999999999999999999875432111111111 1125788999999999744 3488888763 322 22
Q ss_pred hcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC
Q 041829 324 LSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRI 403 (486)
Q Consensus 324 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~ 403 (486)
+.....+.. + ..+ ......+..+++. +.+.++++.++..++++++.+.|+++ ++++..+..
T Consensus 258 l~~~~~~~~--------------~--~~~-~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 318 (386)
T 1u08_A 258 IRKVHQYLT--------------F--SVN-TPAQLALADMLRA-EPEHYLALPDFYRQKRDILVNALNES-RLEILPCEG 318 (386)
T ss_dssp HHHHHHHHT--------------S--SCC-HHHHHHHHHHHHH-CTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCB
T ss_pred HHHHHHhhc--------------c--CCC-hHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCc
Confidence 211100000 0 000 1111233334443 35678888899999999999999987 888764444
Q ss_pred ceEEEEEecCCCCCcccchHHHHHHHHHHH-ccCcEEEEee-eE----CCEeEEEEEecCCCCCHHHHHHHHHHHHH
Q 041829 404 FSLVCFRLLPPHNDEDHGNKLNHKLLDDIN-STGKIFISHT-VL----SGKYILRFAVGAPLTEWRHVNAAWEVMQD 474 (486)
Q Consensus 404 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~-~~----~~~~~lRi~~~~~~~t~~di~~~~~~l~~ 474 (486)
..++++++..... ....++.+.|. +.| +.+.+. .+ .+..++|+++ . +++++|++++++|++
T Consensus 319 g~~~~~~~~~~~~------~~~~~~~~~l~~~~g-i~v~~g~~f~~~~~~~~~iRis~-~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 319 TYFLLVDYSAVST------LDDVEFCQWLTQEHG-VAAIPLSVFCADPFPHKLIRLCF-A--KKESTLLAAAERLRQ 385 (386)
T ss_dssp SSEEEEECTTTCC------SCHHHHHHHHHHHSC-EECEEGGGGCSSCCCSCEEEEEC-C--SCHHHHHHHHHHHTT
T ss_pred eEEEEEecCCCCC------CCHHHHHHHHHHhCC-EEEeCchHhCCCCCCCCEEEEEE-c--CCHHHHHHHHHHHhh
Confidence 4566677643100 01245667676 456 444433 23 2456899999 3 489999999998864
No 81
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.92 E-value=2.4e-23 Score=211.41 Aligned_cols=335 Identities=11% Similarity=0.063 Sum_probs=221.5
Q ss_pred HHHHHHHHHhcCcCc-cccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHH--HHHHHH
Q 041829 91 GFLGEMLSAGLNIVG-FSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAAR--DKALKR 167 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~--~~~~~~ 167 (486)
..+.+.+...+.... ..|....+..++++++.+++.+.+|.+.+ ....++|+|||+++..++.+.. .
T Consensus 60 ~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~-----~~~i~~t~g~t~al~~~~~~l~~~~----- 129 (437)
T 3g0t_A 60 QIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIP-----ARACVPTVGSMQGCFVSFLVANRTH----- 129 (437)
T ss_dssp HHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCC-----GGGEEEESHHHHHHHHHHHHHTTSC-----
T ss_pred HHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCC-----cccEEEeCCHHHHHHHHHHHHhcCC-----
Confidence 334444444443222 44544455689999999999988886532 1268999999999988887654 3
Q ss_pred hCccCCCCe--EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcc
Q 041829 168 VGKNSLEKL--VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTS 245 (486)
Q Consensus 168 ~~~~~~~~~--~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~ 245 (486)
+++ .|+++..+|.++..+++..|. +++.+|++++ ++.+|+++|+++++.. .+.+|+++.++|+
T Consensus 130 ------~gd~~~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~l~~~-----~~~~v~l~~p~np 194 (437)
T 3g0t_A 130 ------KNREYGTLFIDPGFNLNKLQCRILGQ---KFESFDLFEY-RGEKLREKLESYLQTG-----QFCSIIYSNPNNP 194 (437)
T ss_dssp ------TTCSCCEEEEESCCHHHHHHHHHHTC---CCEEEEGGGG-CTTHHHHHHHHHHTTT-----CCCEEEEESSCTT
T ss_pred ------CCCccEEEEeCCCcHhHHHHHHHcCC---EEEEEeecCC-CCccCHHHHHHHHhcC-----CceEEEEeCCCCC
Confidence 556 788889999999999999999 9999999744 4789999999998321 2457888899999
Q ss_pred ccccCC---hHHHHHHHHHhCCEEEeeccccchhccCc-cc---h---hcccCCcCCCceeeecccccC-CCCcceEEEE
Q 041829 246 STAVDP---LLALGNIAKSNGMWFHVDAAYAGSACICP-EY---R---QYIDGVEEADSFNMNAHKWFL-TNFDCSALWV 314 (486)
Q Consensus 246 tG~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~-~~---~---~~~~~~~~aDs~~~~~hK~l~-~p~~~g~l~~ 314 (486)
||.+-| +++|+++|+++|+++|+|++|+.+..... .. . ..+.+....+.++.++||+++ ....+|+++.
T Consensus 195 tG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 274 (437)
T 3g0t_A 195 TWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMI 274 (437)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEE
T ss_pred CCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEE
Confidence 999976 77789999999999999999986443210 00 0 111112245678889999997 4456888887
Q ss_pred eCchHHHHHhc-CCccc---------ccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhCh--hh---HHHHHHHH
Q 041829 315 KDRNTLIQSLS-TNPEF---------LKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGL--EN---LQGYIRNH 379 (486)
Q Consensus 315 r~~~~~~~~~~-~~~~y---------l~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~--~g---~~~~~~~~ 379 (486)
++ ..+.+.+. ....+ +.... ...+.....+..+++...+.. .+ ++++.++.
T Consensus 275 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 340 (437)
T 3g0t_A 275 SG-KLYEREYPDLEESFGRLRFGEALSSSAL-------------YALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEY 340 (437)
T ss_dssp CH-HHHHCBCGGGHHHHSCSBHHHHHHTTHH-------------HHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHH
T ss_pred CH-HHhhhhhhcccccccccchhHHHHHHHH-------------hhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHH
Confidence 63 22220100 00000 10000 000001123333333333322 22 78889999
Q ss_pred HHHHHHHHHHHhcCCCeEEe------cC-CCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECC---Ee
Q 041829 380 IQLAKHFEGLVAQDLRFEVV------TP-RIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSG---KY 449 (486)
Q Consensus 380 ~~~a~~l~~~l~~~~~~~~~------~~-~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~---~~ 449 (486)
.++++++.+.|+++ ++++. .+ ....++.+.+... + ..++.+.|.++| +.+.+....+ ..
T Consensus 341 ~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~l~~~L~~~g-i~v~~~~~~~~~~~~ 409 (437)
T 3g0t_A 341 GRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGM-------D--SSKLIEKFVRYG-MCAITLKTTGSKRNE 409 (437)
T ss_dssp HHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTC-------C--HHHHHHHHHHTT-EECEESTTTTCCCTT
T ss_pred HHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCCC-------C--HHHHHHHHHHcC-eEEeeccccCCCCCC
Confidence 99999999999998 89887 34 4455566676521 1 246777888887 4444432211 15
Q ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041829 450 ILRFAVGAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 450 ~lRi~~~~~~~t~~di~~~~~~l~~~~~ 477 (486)
++|+++ + ..+++|+++++++|+++.+
T Consensus 410 ~iRis~-~-~~~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 410 AMRICT-S-LLPESQFPDLEKRLQMLNA 435 (437)
T ss_dssp CEEEEC-S-SSCGGGHHHHHHHHHHHHH
T ss_pred EEEEEE-e-cCCHHHHHHHHHHHHHHHh
Confidence 799999 4 4489999999999998764
No 82
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.92 E-value=1.8e-23 Score=209.25 Aligned_cols=326 Identities=14% Similarity=0.056 Sum_probs=217.3
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCc
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGK 170 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 170 (486)
..+.+.+...+......|....+..++++++.+++.+.+|.+.+ ....++|+|||+++..++.+...
T Consensus 47 ~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~-----~~~v~~t~g~~~al~~~~~~l~~-------- 113 (391)
T 3h14_A 47 RGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLD-----PGRVVITPGSSGGFLLAFTALFD-------- 113 (391)
T ss_dssp HHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCC-----GGGEEEESSHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCC-----HHHEEEecChHHHHHHHHHHhcC--------
Confidence 34556666656554455555556789999999999999886432 12689999999999888776533
Q ss_pred cCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC
Q 041829 171 NSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD 250 (486)
Q Consensus 171 ~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id 250 (486)
+++.|+++..+|.++...++.+|+ +++.+|+++++++.+|+++|+++ .+.+|+++.++|+||.+-
T Consensus 114 ---~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~---------~~~~v~i~~p~nptG~~~ 178 (391)
T 3h14_A 114 ---SGDRVGIGAPGYPSYRQILRALGL---VPVDLPTAPENRLQPVPADFAGL---------DLAGLMVASPANPTGTML 178 (391)
T ss_dssp ---TTCEEEEEESCCHHHHHHHHHTTC---EEEEEECCGGGTTSCCHHHHTTS---------CCSEEEEESSCTTTCCCC
T ss_pred ---CCCEEEEcCCCCccHHHHHHHcCC---EEEEeecCcccCCCCCHHHHHhc---------CCeEEEECCCCCCCCccC
Confidence 667888899999999999999999 99999998765678999999876 245788889999999997
Q ss_pred C---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccC-CCCcceEEEEeCchHHHHHhcC
Q 041829 251 P---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFL-TNFDCSALWVKDRNTLIQSLST 326 (486)
Q Consensus 251 ~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~-~p~~~g~l~~r~~~~~~~~~~~ 326 (486)
| +++|+++|+++|+++|+|++|+.+..... .... ......+.++.+++|+++ ....+|+++.+++ ... .+..
T Consensus 179 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~-~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~-~~~~ 254 (391)
T 3h14_A 179 DHAAMGALIEAAQAQGASFISDEIYHGIEYEAK-AVTA-LELTDECYVINSFSKYFSMTGWRVGWMVVPED-QVR-VVER 254 (391)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCG-GGTCSSSEEEEESSSTTCCTTSCCEEEECCGG-GHH-HHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEECcchhcccCCC-CcCh-hhcCCCEEEEEechhccCCccceeEEEEeCHH-HHH-HHHH
Confidence 7 88999999999999999999987543211 1111 112234566778999997 4456788877553 222 1111
Q ss_pred CcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh-ChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCce
Q 041829 327 NPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY-GLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFS 405 (486)
Q Consensus 327 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~ 405 (486)
...+. +-....+..+++...+ +.+.+++..++..++++++.+.|+++ ++..+.++..+
T Consensus 255 ~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~ 313 (391)
T 3h14_A 255 IAQNM--------------------FICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKA-GFTRIAPPDGA 313 (391)
T ss_dssp HHHHT--------------------TCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCBCCCCBT
T ss_pred HHhhh--------------------ccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCee
Confidence 00000 0011223333332222 56778888999999999999999988 45443344443
Q ss_pred -EEEEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEee-eEC---CEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 406 -LVCFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHT-VLS---GKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 406 -~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~~~---~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
.+.+.+.... .+ ..++.+.|.++ | +.+.+. .+. +..++|+++ .. +++++++++++|.++.++.
T Consensus 314 ~~~~~~~~~~~-----~~--~~~~~~~l~~~~g-i~v~~g~~~~~~~~~~~iRis~-~~--~~~~i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 314 FYVYADVSDLT-----DD--SRAFAAEILEKAG-VAVTPGLDFDPERGAGTLRFSY-AR--ATADIEEGLDRLEAFMQAR 382 (391)
T ss_dssp TEEEEECTTTC-----SC--HHHHHHHHHHHHC-EECEEGGGTCTTTGGGEEEEEC-CS--CHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEecCccC-----CC--HHHHHHHHHHHCC-EEEcCchhhCCCCCCCeEEEEe-cC--CHHHHHHHHHHHHHHHHHh
Confidence 3444554211 11 24567776665 7 445443 222 356999999 33 7899999999999988765
Q ss_pred H
Q 041829 480 L 480 (486)
Q Consensus 480 ~ 480 (486)
.
T Consensus 383 ~ 383 (391)
T 3h14_A 383 G 383 (391)
T ss_dssp -
T ss_pred c
Confidence 4
No 83
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.92 E-value=1.3e-22 Score=209.49 Aligned_cols=333 Identities=11% Similarity=0.089 Sum_probs=223.4
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHH-HHHHHHhCccCCCCeEEEecCC
Q 041829 105 GFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAAR-DKALKRVGKNSLEKLVVYASDQ 183 (486)
Q Consensus 105 ~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~-~~~~~~~~~~~~~~~~v~~s~~ 183 (486)
...|...++..++++++.+|+.+..|.+.. ....++|+|||+++..++.+.. . +++.|+++..
T Consensus 127 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-----~~~i~~t~G~~~al~~~~~~l~~~-----------~gd~Vlv~~p 190 (500)
T 3tcm_A 127 TGAYSHSQGIHGLRDAIASGIASRDGFPAN-----ADDIFLTDGASPGVHLMMQLLIRN-----------EKDGILVPIP 190 (500)
T ss_dssp SSSCCCTTCCHHHHHHHHHHHHHHHSSCCC-----GGGEEEESSSHHHHHHHHHHHCCS-----------TTEEEEEEES
T ss_pred CCCcCCCcChHHHHHHHHHHHHhhcCCCCC-----cccEEEcCCHHHHHHHHHHHHcCC-----------CCCEEEEeCC
Confidence 456777788899999999999998886532 1268999999999888776653 2 6788999999
Q ss_pred CchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC---ChHHHHHHHH
Q 041829 184 THSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD---PLLALGNIAK 260 (486)
Q Consensus 184 ~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id---~l~~I~~ia~ 260 (486)
.|.++..+++.+|. +++.+|++++++|.+|+++|+++|++..+.|.++.+|+++.++|+||.+- ++++|+++|+
T Consensus 191 ~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~ 267 (500)
T 3tcm_A 191 QYPLYSASIALHGG---ALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCK 267 (500)
T ss_dssp CCTHHHHHHHHTTC---EEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHcCC---EEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHH
Confidence 99999999999999 99999999876789999999999998776676788899999999999994 4777888899
Q ss_pred HhCCEEEeeccccchhccCc----cchhcccCC----cCCCce-eeecccccC-CC-CcceEEEEe--CchHHHHHhcCC
Q 041829 261 SNGMWFHVDAAYAGSACICP----EYRQYIDGV----EEADSF-NMNAHKWFL-TN-FDCSALWVK--DRNTLIQSLSTN 327 (486)
Q Consensus 261 ~~g~~lhvD~A~g~~~~~~~----~~~~~~~~~----~~aDs~-~~~~hK~l~-~p-~~~g~l~~r--~~~~~~~~~~~~ 327 (486)
++|+++++|++|+.+.+... ........+ ...+.+ ..+++|.++ .| ..+|++++. ++..+.......
T Consensus 268 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 347 (500)
T 3tcm_A 268 NEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIA 347 (500)
T ss_dssp HHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHH
T ss_pred HcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHH
Confidence 99999999999987543211 111111111 122233 458899983 22 347887763 443332221111
Q ss_pred cccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC------------hhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 041829 328 PEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG------------LENLQGYIRNHIQLAKHFEGLVAQDLR 395 (486)
Q Consensus 328 ~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g------------~~g~~~~~~~~~~~a~~l~~~l~~~~~ 395 (486)
..++ ++ ..+..+++...+. .+..+++.++..++++++.+.|+++|+
T Consensus 348 ~~~~-------------------~~---~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g 405 (500)
T 3tcm_A 348 SVNL-------------------CS---NITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEG 405 (500)
T ss_dssp HTTC-------------------CC---CHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred hccc-------------------CC---CHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0000 11 1122222222221 133456677888899999999999999
Q ss_pred eEEecCCCceEEEE-EecCCCC--C---cccchHHHHHHH-HHHHccCcEEEEeeeE---CCEeEEEEEecCCCCCHHHH
Q 041829 396 FEVVTPRIFSLVCF-RLLPPHN--D---EDHGNKLNHKLL-DDINSTGKIFISHTVL---SGKYILRFAVGAPLTEWRHV 465 (486)
Q Consensus 396 ~~~~~~~~~~~v~f-~~~~~~~--~---~~~~~~~~~~l~-~~l~~~g~~~~~~~~~---~~~~~lRi~~~~~~~t~~di 465 (486)
+++. +|..++++| ++..... + ...... ...++ ..|.+.|..++.+..+ .+..++|+++ . ++++++
T Consensus 406 ~~~~-~~~g~~~~~~~~~lp~~~~~~~~~~g~~~-~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~-~--~~~e~i 480 (500)
T 3tcm_A 406 ITCN-EAEGAMYVFPQICLPQKAIEAAKAANKAP-DAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTI-L--PQEDKI 480 (500)
T ss_dssp EECC-CCCBTTEECCEECCCHHHHHHHHHHTSCH-HHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEES-C--SCTTTH
T ss_pred cEEe-cCCeEEEEeeeecCchhhHHHHHhcCCCc-HHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEE-C--CCHHHH
Confidence 9876 555555554 3321100 0 000000 12222 3444567444433322 3556899999 4 688999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 041829 466 NAAWEVMQDKASALLARL 483 (486)
Q Consensus 466 ~~~~~~l~~~~~~l~~~~ 483 (486)
++++++|.++.+++.++.
T Consensus 481 ~~~i~~l~~~~~~~~~~~ 498 (500)
T 3tcm_A 481 PAVISRFTVFHEAFMSEY 498 (500)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999888765
No 84
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.92 E-value=8.5e-24 Score=210.35 Aligned_cols=313 Identities=12% Similarity=0.070 Sum_probs=210.6
Q ss_pred cCccccccChhhHHHHHHHHHHHHHHc-CCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEec
Q 041829 103 IVGFSWITSPAATELEMIVLDWLAKLL-KLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYAS 181 (486)
Q Consensus 103 ~~~~~~~~~~~~~~le~~~~~~la~l~-g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s 181 (486)
.....|...++..+++++ +++++ +.+.+ ..++|+|||+|+..++.+... +++.|+++
T Consensus 54 ~~~~~y~~~~g~~~l~~~----la~~~~~~~~~-------~v~~~~g~~~a~~~~~~~l~~-----------~gd~Vl~~ 111 (375)
T 3op7_A 54 GTKLNYGWIEGSPAFKKS----VSQLYTGVKPE-------QILQTNGATGANLLVLYSLIE-----------PGDHVISL 111 (375)
T ss_dssp TSCCSSCCTTCCHHHHHH----HHTTSSSCCGG-------GEEEESHHHHHHHHHHHHHCC-----------TTCEEEEE
T ss_pred cCCcCCCCCCChHHHHHH----HHHHhccCChh-------hEEEcCChHHHHHHHHHHhcC-----------CCCEEEEe
Confidence 334455556667888888 56655 34443 589999999999988876533 67789999
Q ss_pred CCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC---hHHHHHH
Q 041829 182 DQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP---LLALGNI 258 (486)
Q Consensus 182 ~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~---l~~I~~i 258 (486)
..+|.++...++..|. +++.+|++.+++|.+|+++|++++++. +.+|+++.++|++|.+.| +++|.++
T Consensus 112 ~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~l~~i~~l 182 (375)
T 3op7_A 112 YPTYQQLYDIPKSLGA---EVDLWQIEEENGWLPDLEKLRQLIRPT------TKMICINNANNPTGAVMDRTYLEELVEI 182 (375)
T ss_dssp ESSCTHHHHHHHHTTC---EEEEEEEEGGGTTEECHHHHHHHCCTT------CCEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred CCCchhHHHHHHHcCC---EEEEEeccccCCCCCCHHHHHHhhccC------CeEEEEcCCCCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999 999999985545789999999998643 457888899999999999 9999999
Q ss_pred HHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCCcccccccccc
Q 041829 259 AKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTNPEFLKNKASQ 337 (486)
Q Consensus 259 a~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~ 337 (486)
|++||+++++|++|+.+... ..... ......+.+..+++|.++.| ..+|+++. +++... .+.....+..
T Consensus 183 a~~~~~~li~De~~~~~~~~--~~~~~-~~~~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~-~~~~~~~~~~----- 252 (375)
T 3op7_A 183 ASEVGAYILSDEVYRSFSEL--DVPSI-IEVYDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVTD-ILRDYRDYTM----- 252 (375)
T ss_dssp HHTTTCEEEEECCSCCCSSS--CCCCH-HHHCTTEEEEEESSSSSSCGGGCCEEEEC-CHHHHH-HHTTTGGGTT-----
T ss_pred HHHcCCEEEEEccccccccc--CCCch-hhhcCCEEEEeEChhhcCCcccceEEEEe-CHHHHH-HHHHHHhhhc-----
Confidence 99999999999999875432 11111 11123456788899999744 45688777 444333 3322111100
Q ss_pred cCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCC
Q 041829 338 ANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHND 417 (486)
Q Consensus 338 ~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~ 417 (486)
.++.......+..+++. ..+.+++..++..++++++.+.|++.|++++..+.....+.+.+.. .
T Consensus 253 ------------~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-- 316 (375)
T 3op7_A 253 ------------ICAGVFDDLVAQLALAH-YQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAV-D-- 316 (375)
T ss_dssp ------------SCCCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECC-S--
T ss_pred ------------cCCCcHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCC-C--
Confidence 00101111222233332 2345566677778899999999999889987754443344445432 1
Q ss_pred cccchHHHHHHHHHHH-ccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 041829 418 EDHGNKLNHKLLDDIN-STGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 418 ~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
.+ ..++..++. +.|.....+..+....++|+++ + .+.+++++++++|.++.+++.
T Consensus 317 ---~~--~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~~-~--~~~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 317 ---MP--MEDFCLQLLQEHGVLLVPGNRFERDGYVRLGF-A--CEQETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp ---SC--HHHHHHHHHHHHCEECEEGGGGTCTTEEEECC-C--SCHHHHHHHHHHHHHHHGGGC
T ss_pred ---CC--HHHHHHHHHHhCCEEEeChhhhCCCCeEEEEe-c--CCHHHHHHHHHHHHHHHHHHh
Confidence 11 245666664 5674433333344456899998 3 345899999999998876543
No 85
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.92 E-value=6e-23 Score=207.88 Aligned_cols=334 Identities=11% Similarity=0.039 Sum_probs=222.5
Q ss_pred HHHHHHHHHHhcCcC---ccccccChhhHHHHHHHHHHHHHHcCCC---CCCcCCCCCCeEEcCchhHHHHHHHHHHHHH
Q 041829 90 AGFLGEMLSAGLNIV---GFSWITSPAATELEMIVLDWLAKLLKLP---EDFLSSGQGGGVIQGTASEAVLVVLLAARDK 163 (486)
Q Consensus 90 ~~~~~~~l~~~~n~~---~~~~~~~~~~~~le~~~~~~la~l~g~~---~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~ 163 (486)
+..+.+.+...+..+ ...|...++..++++++.+|+.+.+|.+ .+ ..++|+|||+++..++.+...
T Consensus 60 ~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~-------~v~~t~G~~~al~~~~~~l~~- 131 (425)
T 1vp4_A 60 RKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDED-------NLIFTVGSQQALDLIGKLFLD- 131 (425)
T ss_dssp HHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGG-------GEEEEEHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcc-------cEEEeccHHHHHHHHHHHhCC-
Confidence 344555555544332 2345445577899999999998887853 33 589999999998887775432
Q ss_pred HHHHhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhC--CCccEEE-EEe
Q 041829 164 ALKRVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTI--GLIPFFL-CAT 240 (486)
Q Consensus 164 ~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~--g~~p~~v-v~~ 240 (486)
+++.|++...+|.++...++..|. +++.+|.+++ .+|+++|++++++..++ +.++.+| +++
T Consensus 132 ----------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~ 195 (425)
T 1vp4_A 132 ----------DESYCVLDDPAYLGAINAFRQYLA---NFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQVKFIYVVS 195 (425)
T ss_dssp ----------TTCEEEEEESCCHHHHHHHHTTTC---EEEEEEEETT---EECHHHHHHHHHHHHHTTCGGGEEEEEEEC
T ss_pred ----------CCCEEEEeCCCcHHHHHHHHHcCC---EEEEeccCCC---CCCHHHHHHHHHhhhhcccCCCceEEEECC
Confidence 567888899999999999999999 9999998753 49999999999863211 1235566 577
Q ss_pred cCCccccccCC---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCC--cCCCceeeecccccCCCCcceEEEEe
Q 041829 241 VGTTSSTAVDP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGV--EEADSFNMNAHKWFLTNFDCSALWVK 315 (486)
Q Consensus 241 ~~~t~tG~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~--~~aDs~~~~~hK~l~~p~~~g~l~~r 315 (486)
.++|+||.+-| +++|+++|+++|+++++|++|+.+......... +..+ ...+.++.+++|+++....+|+++.+
T Consensus 196 ~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~ 274 (425)
T 1vp4_A 196 NFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDP-IFKIGGPERVVLLNTFSKVLAPGLRIGMVAGS 274 (425)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCC-HHHHHCTTTEEEEEESTTTTCGGGCEEEEECC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcC-HHHhCCCCCEEEEeccccccccccceEEEeeC
Confidence 89999999965 678999999999999999999875432111111 1111 13457788999999833347888876
Q ss_pred CchHHHHHhcC-CcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--C--hhhHHHHHHHHHHHHHHHHHHH
Q 041829 316 DRNTLIQSLST-NPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--G--LENLQGYIRNHIQLAKHFEGLV 390 (486)
Q Consensus 316 ~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g--~~g~~~~~~~~~~~a~~l~~~l 390 (486)
++.+. .+.. ...+. .+ ...+..+++.+.+ + .+.++++.++..++++++.+.|
T Consensus 275 -~~~~~-~l~~~~~~~~-------------------~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L 331 (425)
T 1vp4_A 275 -KEFIR-KIVQAKQSAD-------------------LC--SPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNAL 331 (425)
T ss_dssp -HHHHH-HHHHHHHHHH-------------------SS--CCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHH-HHHHHhhhhc-------------------CC--CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 2211 00100 00 1223334343333 2 3456777778888999999999
Q ss_pred hcC-C---CeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEee-eE----CCEeEEEEEecCCCCC
Q 041829 391 AQD-L---RFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHT-VL----SGKYILRFAVGAPLTE 461 (486)
Q Consensus 391 ~~~-~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~----~~~~~lRi~~~~~~~t 461 (486)
++. | ++++..+....++++++.. +. + ..++.+.|.++| +.+.+. .+ .+..++|+++. . .+
T Consensus 332 ~~~~~~~~g~~~~~~~~g~~~~~~~~~-~~-----~--~~~l~~~l~~~g-i~v~~g~~f~~~~~~~~~iRis~~-~-~~ 400 (425)
T 1vp4_A 332 EEYFSDIPGVKWVKSEGGLFIWLTLPE-GF-----D--TWEMFEYAKRKK-VFYVPGRVFKVYDEPSPSMRLSFC-L-PP 400 (425)
T ss_dssp HHHSTTSTTCEECCCSBSSEEEEECCT-TC-----C--TTTTHHHHHHHT-EECEEGGGGCTTCCCCSEEEEECS-S-SC
T ss_pred HHhCCCCCceEEecCCccEEEEEEcCC-CC-----C--HHHHHHHHHHCC-CEEECchhhcCCCCCCCeEEEEeC-C-CC
Confidence 873 5 6887655445566777642 11 0 134666777777 444443 23 13568999993 3 38
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 041829 462 WRHVNAAWEVMQDKASALLAR 482 (486)
Q Consensus 462 ~~di~~~~~~l~~~~~~l~~~ 482 (486)
++++++++++|+++.+++.++
T Consensus 401 ~e~i~~~l~~l~~~l~~~~~~ 421 (425)
T 1vp4_A 401 DEKIVEGIKRLREVVLEYGKE 421 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998877654
No 86
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.92 E-value=1.2e-22 Score=206.78 Aligned_cols=334 Identities=10% Similarity=0.066 Sum_probs=222.7
Q ss_pred HHHHHHHHHHhcCcC---ccccccChhhHHHHHHHHHHHHHHcCCC-CCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHH
Q 041829 90 AGFLGEMLSAGLNIV---GFSWITSPAATELEMIVLDWLAKLLKLP-EDFLSSGQGGGVIQGTASEAVLVVLLAARDKAL 165 (486)
Q Consensus 90 ~~~~~~~l~~~~n~~---~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~ 165 (486)
+..+.+.+...+... ...|....+..++++.+.+++.+.+|.+ .+ ..++|+|||+++..++.+..+
T Consensus 93 ~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------~v~~t~G~~~al~~~~~~l~~--- 162 (448)
T 3aow_A 93 KEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDN-------DIMITSGSQQALDLIGRVFLN--- 162 (448)
T ss_dssp HHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTS-------EEEEESSHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChh-------hEEEeCcHHHHHHHHHHHHcC---
Confidence 444555555544332 2345555678899999888888888983 32 589999999999888776543
Q ss_pred HHhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEE-EEecCCc
Q 041829 166 KRVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFL-CATVGTT 244 (486)
Q Consensus 166 ~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~v-v~~~~~t 244 (486)
+++.|++...+|.++..+++..|. +++.+|.+++ .+|+++|+++++.....+.++.+| ++..++|
T Consensus 163 --------~Gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~---g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~N 228 (448)
T 3aow_A 163 --------PGDIVVVEAPTYLAALQAFNFYEP---QYIQIPLDDE---GMKVEILEEKLKELKSQGKKVKVVYTVPTFQN 228 (448)
T ss_dssp --------TTCEEEEEESCCHHHHHHHHTTCC---EEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEEEECCSSCT
T ss_pred --------CCCEEEEeCCChHHHHHHHHHcCC---EEEEeccCCC---CCCHHHHHHHHhhhhccCCCCeEEEECCCCCC
Confidence 677899999999999999999999 9999998753 499999999997432222346666 5678899
Q ss_pred cccccCC---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCC--cCCCceeeecccccCCCCcceEEEEeCchH
Q 041829 245 SSTAVDP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGV--EEADSFNMNAHKWFLTNFDCSALWVKDRNT 319 (486)
Q Consensus 245 ~tG~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~--~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~ 319 (486)
+||.+-| +++|+++|++||+++++|++|+.+.+....... +..+ .+.+....+++|+++....+|+++.++ ..
T Consensus 229 PtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~-~~~~~~~~~vi~~~S~SK~~~~GlriG~v~~~~-~l 306 (448)
T 3aow_A 229 PAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKK-IKALDNEGRVIYLGTFSKILAPGFRIGWMVGDP-GI 306 (448)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCC-TGGGCTTSCEEEEEESTTTTCGGGCCEEEEECH-HH
T ss_pred CcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcC-HHhcCCCCCEEEEccchhhccccccEEEEEeCH-HH
Confidence 9999966 579999999999999999999875432111111 1112 134567788899998223479988863 32
Q ss_pred HHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--C--hhhHHHHHHHHHHHHHHHHHHHhc-CC
Q 041829 320 LIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--G--LENLQGYIRNHIQLAKHFEGLVAQ-DL 394 (486)
Q Consensus 320 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g--~~g~~~~~~~~~~~a~~l~~~l~~-~~ 394 (486)
+. .+....... + .++ ..+..+++...+ + .+.++++.++..++++++.+.|++ +|
T Consensus 307 ~~-~l~~~~~~~----------------~-~~~---~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 365 (448)
T 3aow_A 307 IR-KMEIAKQST----------------D-LCT---NVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMP 365 (448)
T ss_dssp HH-HHHHHHHHH----------------H-SSC---CHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HH-HHHHHHHHh----------------c-CCC---CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 32 221110000 0 001 222333333332 2 345667777777899999999987 57
Q ss_pred -CeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeE----CCEeEEEEEecCCCCCHHHHHHHH
Q 041829 395 -RFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVL----SGKYILRFAVGAPLTEWRHVNAAW 469 (486)
Q Consensus 395 -~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~~~~~lRi~~~~~~~t~~di~~~~ 469 (486)
++++..+....++.+++.. + .+ ..++.++|.++|..+..+..+ .+..++|+++ .. .++++|++++
T Consensus 366 ~g~~~~~p~~g~~~~v~~~~-~-----~~--~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~-~~-~~~e~i~~~~ 435 (448)
T 3aow_A 366 EGVKWTKPEGGMFIWVTLPD-G-----ID--SKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNF-TY-VDEDKIMEGI 435 (448)
T ss_dssp TTCEECCCSBSSEEEEECST-T-----CC--HHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEEC-SS-SCTHHHHHHH
T ss_pred CCeEEeCCCccEEEEEEcCC-C-----CC--HHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEe-CC-CCHHHHHHHH
Confidence 6887644444556666642 1 11 256778888887444443333 2356899999 33 3899999999
Q ss_pred HHHHHHHHHHH
Q 041829 470 EVMQDKASALL 480 (486)
Q Consensus 470 ~~l~~~~~~l~ 480 (486)
++|.++++++.
T Consensus 436 ~~L~~~l~~~~ 446 (448)
T 3aow_A 436 KRLAETIKEEL 446 (448)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 87
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.91 E-value=3.3e-23 Score=220.28 Aligned_cols=321 Identities=12% Similarity=0.023 Sum_probs=208.2
Q ss_pred HHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHH-HHHhCCCC
Q 041829 121 VLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKA-CQIGGIHP 199 (486)
Q Consensus 121 ~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a-~~~~g~g~ 199 (486)
+.+.+++++|.+.. .++++|+|++|..++.+... +++.|+++...|.|+..+ ++..|+
T Consensus 178 ~e~~lA~~~gae~~--------i~v~nGtt~an~~ai~al~~-----------pGD~VLv~~~~H~S~~~~~~~l~Ga-- 236 (730)
T 1c4k_A 178 AEKHAARVYNADKT--------YFVLGGSSNANNTVTSALVS-----------NGDLVLFDRNNHKSVYNSALAMAGG-- 236 (730)
T ss_dssp HHHHHHHHTTCSEE--------EEESSHHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHHHHTTTTCC--
T ss_pred HHHHHHHHHCCCcE--------EEECCHHHHHHHHHHHHhcC-----------CCCEEEEcCCchHHHHHHHHHHCCC--
Confidence 33449999998763 67778777999888876543 678899999999999998 888888
Q ss_pred CCeEEEeCCCCC---CCccCHHHH-----HHHHHHH-Hh--CCCcc-EEEEEecCCccccccCChHHHHHHHHHhCCEEE
Q 041829 200 QNFRVLKTDSST---NYSLSPDSL-----AEAISRD-LT--IGLIP-FFLCATVGTTSSTAVDPLLALGNIAKSNGMWFH 267 (486)
Q Consensus 200 ~~v~~v~~~~~~---~~~id~~~L-----~~~i~~~-~~--~g~~p-~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lh 267 (486)
+++.++.+.++ .+.+|+++| +++|++. .+ ....| .+|+++.+ |++|.+.|+++|+++|+++|+++|
T Consensus 237 -~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~li 314 (730)
T 1c4k_A 237 -RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIE 314 (730)
T ss_dssp -EEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEE
T ss_pred -EEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEE
Confidence 88888765321 134788888 7776543 11 01123 57777876 589999999999999999999999
Q ss_pred eeccccchhccCccchh--cccC-CcCCC----ceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCC
Q 041829 268 VDAAYAGSACICPEYRQ--YIDG-VEEAD----SFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANM 340 (486)
Q Consensus 268 vD~A~g~~~~~~~~~~~--~~~~-~~~aD----s~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~ 340 (486)
||+||+++..+.+..+. .+.. ..++| +++.++||++++|.++|++++++... .....++.......
T Consensus 315 vDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l-----~g~~~~i~~~~~~~-- 387 (730)
T 1c4k_A 315 FDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHI-----KGQLRYCDHKHFNN-- 387 (730)
T ss_dssp EECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGG-----TTSTTCCCHHHHHH--
T ss_pred EEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhh-----cCcccccCHHHHHH--
Confidence 99999875544443321 1110 11577 89999999999998899999988642 00111111000000
Q ss_pred ccCCCCCccCCCCCCC--cHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCC--------------
Q 041829 341 VVDYKDWQIPLGRRFR--SLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQ-DLRFEVVTPRI-------------- 403 (486)
Q Consensus 341 ~~~~~~~~~~~sr~~~--~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~-~~~~~~~~~~~-------------- 403 (486)
.. ...+.+.... ..++-++++.+..++..+++++..++++++++.|++ +++++++.+..
T Consensus 388 ~~----~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~ 463 (730)
T 1c4k_A 388 SF----NLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDM 463 (730)
T ss_dssp HH----HHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHH
T ss_pred HH----HHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccc
Confidence 00 0011111111 123334555555534467789999999999999998 78999865421
Q ss_pred ----------------------c---eE----EEEEecCC---CCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEE
Q 041829 404 ----------------------F---SL----VCFRLLPP---HNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYIL 451 (486)
Q Consensus 404 ----------------------~---~~----v~f~~~~~---~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~l 451 (486)
. .+ ++|..++. .............+.+.|.++| +.+... +...+
T Consensus 464 ~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~G-I~v~~~---~~~~i 539 (730)
T 1c4k_A 464 ANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHG-IIPEKS---DLNSI 539 (730)
T ss_dssp TTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTT-CCCSEE---CSSEE
T ss_pred cccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCC-cEEEEC---CCCeE
Confidence 0 01 45554210 0000000111245677777777 333322 34578
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 041829 452 RFAVGAPLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 452 Ri~~~~~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
|+++ +..+|++++++++++|+++.+++.
T Consensus 540 r~~~-s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 540 LFLM-TPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp EEEC-CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEe-CCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9998 889999999999999999887653
No 88
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.91 E-value=1.3e-23 Score=209.55 Aligned_cols=321 Identities=14% Similarity=0.099 Sum_probs=214.0
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCc
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGK 170 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 170 (486)
..+.+.+...+.. ...|...+...++++. +++++|.+.+ ..++|+|||+++..++.++..
T Consensus 41 ~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~----la~~~~~~~~-------~v~~~~g~~~a~~~~~~~~~~-------- 100 (381)
T 1v2d_A 41 PFLLEAVRRALGR-QDQYAPPAGLPALREA----LAEEFAVEPE-------SVVVTSGATEALYVLLQSLVG-------- 100 (381)
T ss_dssp HHHHHHHHHHTTT-SCSCCCTTCCHHHHHH----HHHHHTSCGG-------GEEEESSHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHH-hcCCCCCCCCHHHHHH----HHHhcCCChh-------hEEEcCChHHHHHHHHHHhCC--------
Confidence 4455555555544 2345444456777777 6777888754 489999999999988876532
Q ss_pred cCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCC--CCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 171 NSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTD--SSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 171 ~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~--~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
+++.|+++..+|.++..+++..|+ +++.+|.+ ++ ++.+|+++|++++++. +.+|+++.++|+||.
T Consensus 101 ---~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~-~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~ 167 (381)
T 1v2d_A 101 ---PGDEVVVLEPFFDVYLPDAFLAGA---KARLVRLDLTPE-GFRLDLSALEKALTPR------TRALLLNTPMNPTGL 167 (381)
T ss_dssp ---TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEEETT-EEECCHHHHHTTCCTT------EEEEEEESSCTTTCC
T ss_pred ---CCCEEEEcCCCchhHHHHHHHcCC---EEEEEeCCCCCc-cCCcCHHHHHHhcCcC------CEEEEECCCCCCCCC
Confidence 667888899999999999999999 99999987 33 3689999999988532 567888899999999
Q ss_pred cCC---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHh
Q 041829 249 VDP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSL 324 (486)
Q Consensus 249 id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~ 324 (486)
+-| +++|+++|+++|+++|+|++|+++.. ............+.|.++.++||+++.| ..+|++++++. .+. .+
T Consensus 168 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~-~~~-~~ 244 (381)
T 1v2d_A 168 VFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKE-FMP-RL 244 (381)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTT-THH-HH
T ss_pred ccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHH-HHH-HH
Confidence 965 89999999999999999999987543 1111111100236789999999998744 33888888643 222 11
Q ss_pred cCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC-hhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC
Q 041829 325 STNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG-LENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRI 403 (486)
Q Consensus 325 ~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~ 403 (486)
.....+. .+ .........+..+++... .++++++.++..++++++.+.|++. ++++..+..
T Consensus 245 ~~~~~~~--------------~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 306 (381)
T 1v2d_A 245 AGMRQWT--------------SF---SAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEG 306 (381)
T ss_dssp HHHHHHH--------------TS---SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSB
T ss_pred HHHHhhc--------------cc---CCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCc
Confidence 1100000 00 000011122233333221 4667888899999999999999985 888875443
Q ss_pred ceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEee-eEC----CEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 404 FSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHT-VLS----GKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 404 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~----~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
..++++.+.. .+ +...+.+.| +.+.+. .+. +..++|+++ .. +++++++++++|.++.++
T Consensus 307 ~~~~~~~~~~-------~~-----~~~~l~~~g-i~v~~g~~~~~~~~~~~~iRi~~-~~--~~~~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 307 TYFLMAELPG-------WD-----AFRLVEEAR-VALIPASAFYLEDPPKDLFRFAF-CK--TEEELHLALERLGRVVNS 370 (381)
T ss_dssp SSEEEEECTT-------CC-----HHHHHHHTC-EECEEGGGGCSSSCCTTEEEEEC-CS--CHHHHHHHHHHHHHHC--
T ss_pred ceEEEEecCh-------Hh-----HHHHHHhCC-EEEecchHhCCCCCCCCEEEEEe-CC--CHHHHHHHHHHHHHHHhh
Confidence 4455566542 11 344455667 444433 222 346899999 33 899999999999998776
Q ss_pred HHH
Q 041829 479 LLA 481 (486)
Q Consensus 479 l~~ 481 (486)
..+
T Consensus 371 ~r~ 373 (381)
T 1v2d_A 371 PRE 373 (381)
T ss_dssp ---
T ss_pred ccc
Confidence 554
No 89
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.91 E-value=1.1e-22 Score=201.47 Aligned_cols=309 Identities=11% Similarity=0.063 Sum_probs=211.4
Q ss_pred HHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhC
Q 041829 90 AGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVG 169 (486)
Q Consensus 90 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 169 (486)
+..+.+.+...+.. ...| ..+...++++. +++++|.+.+ ..++|+|||+++..++.+...
T Consensus 47 ~~~v~~a~~~~~~~-~~~y-~~~~~~~lr~~----la~~~~~~~~-------~v~~~~g~t~a~~~~~~~~~~------- 106 (363)
T 3ffh_A 47 SKKVAAIQANSSVE-TEIY-PDGWASSLRKE----VADFYQLEEE-------ELIFTAGVDELIELLTRVLLD------- 106 (363)
T ss_dssp CHHHHHHHHTCBSC-CCBC-----CHHHHHH----HHHHHTCCGG-------GEEEESSHHHHHHHHHHHHCS-------
T ss_pred CHHHHHHHHHHHHH-hhcC-CCcchHHHHHH----HHHHhCCChh-------hEEEeCCHHHHHHHHHHHHcc-------
Confidence 34455555554432 1222 23344555555 8888887654 589999999999888776532
Q ss_pred ccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 170 KNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 170 ~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++.|+++..+|.++...++..|. +++.+|.+++ +.+|+++|++++++. +.+|+++.++|+||.+
T Consensus 107 ----~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~--~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~ 171 (363)
T 3ffh_A 107 ----TTTNTVMATPTFVQYRQNALIEGA---EVREIPLLQD--GEHDLEGMLNAIDEK------TTIVWICNPNNPTGNY 171 (363)
T ss_dssp ----TTCEEEEEESSCHHHHHHHHHHTC---EEEEEECCTT--SCCCHHHHHHHCCTT------EEEEEEESSCTTTCCC
T ss_pred ----CCCEEEEcCCChHHHHHHHHHcCC---EEEEecCCCC--CCcCHHHHHHhcccC------CCEEEEeCCCCCcCCC
Confidence 567888899999999999999999 9999999863 699999999998643 5688889999999999
Q ss_pred CChHHHHHHHHHh--CCEEEeeccccchhccCccchhcccCC--cCCCceeeecccccCCC-CcceEEEEeCchHHHHHh
Q 041829 250 DPLLALGNIAKSN--GMWFHVDAAYAGSACICPEYRQYIDGV--EEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSL 324 (486)
Q Consensus 250 d~l~~I~~ia~~~--g~~lhvD~A~g~~~~~~~~~~~~~~~~--~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~ 324 (486)
.|++++.++|+.+ |+++|+|++|+.+.. .......... ..-+.+..+++|+++.| ..+|+++. +++......
T Consensus 172 ~~~~~l~~l~~~~~~~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~l~ 248 (363)
T 3ffh_A 172 IELADIQAFLDRVPSDVLVVLDEAYIEYVT--PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIA-DKEIIRQLN 248 (363)
T ss_dssp CCHHHHHHHHTTSCTTSEEEEECTTGGGCS--SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEE-CHHHHHHHH
T ss_pred cCHHHHHHHHHhCCCCcEEEEeCchHhhcC--ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeec-CHHHHHHHH
Confidence 9999999999888 999999999986543 1111111111 12235677889999743 44588887 443333221
Q ss_pred cCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh-ChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC
Q 041829 325 STNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY-GLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRI 403 (486)
Q Consensus 325 ~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~ 403 (486)
.....| ....+..+++...+ ..+.+++..++..++++++.+.|++++++++. ++.
T Consensus 249 ~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~ 304 (363)
T 3ffh_A 249 IVRPPF-----------------------NTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLY-PAN 304 (363)
T ss_dssp HTCCSC-----------------------CCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEC-CCC
T ss_pred HhCCCC-----------------------CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceEC-CCC
Confidence 111110 01223333333332 23667888899999999999999997799876 455
Q ss_pred ceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEee-eECCEeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 404 FSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHT-VLSGKYILRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 404 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
.+++.+.+.. ...++.+.|.++| +.+.+. .+....++|+++ + +++|+++++++|+++
T Consensus 305 ~~~~~~~~~~----------~~~~~~~~l~~~g-i~v~~g~~~~~~~~iRis~-~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 305 GNFVLIDLGI----------EAGTIFSYLEKNG-YITRSGAALGFPTAVRITI-G---KEEDNSAVIALLEKL 362 (363)
T ss_dssp SSEEEEECSS----------CHHHHHHHHHHTT-EECEETTTTTCTTEEEEEC-C---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCC----------CHHHHHHHHHHCC-eEEEeCccCCCCCeEEEEC-C---CHHHHHHHHHHHHHh
Confidence 5667777642 1256777777777 444443 222246899998 3 899999999999875
No 90
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.91 E-value=2.5e-23 Score=206.27 Aligned_cols=289 Identities=14% Similarity=0.106 Sum_probs=202.5
Q ss_pred hhhHHHHHHHHHHHHHHcCC-CCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHH
Q 041829 112 PAATELEMIVLDWLAKLLKL-PEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQK 190 (486)
Q Consensus 112 ~~~~~le~~~~~~la~l~g~-~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 190 (486)
+...++++. +++++|. +.+ ..++|+|||+++..++.+... +++.|+++..+|.++..
T Consensus 67 ~~~~~l~~~----la~~~g~~~~~-------~i~~~~g~t~a~~~~~~~~~~-----------~gd~Vl~~~~~~~~~~~ 124 (367)
T 3euc_A 67 PSSEALRAK----LKEVMQVPAGM-------EVLLGNGSDEIISMLALAAAR-----------PGAKVMAPVPGFVMYAM 124 (367)
T ss_dssp CCHHHHHHH----HHHHHTCCTTC-------EEEEEEHHHHHHHHHHHHTCC-----------TTCEEEEEESCSCCSCH
T ss_pred CcHHHHHHH----HHHHhCCCCcc-------eEEEcCCHHHHHHHHHHHHcC-----------CCCEEEEcCCCHHHHHH
Confidence 344555555 8888898 432 589999999999888775432 56788889999999999
Q ss_pred HHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc---CChHHHHHHHHHh--CCE
Q 041829 191 ACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV---DPLLALGNIAKSN--GMW 265 (486)
Q Consensus 191 a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i---d~l~~I~~ia~~~--g~~ 265 (486)
.++..|. +++.+|+++ +|.+|+++|++++++.. +.+|+++.++|++|.+ +++++|+++|++| |++
T Consensus 125 ~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~l~~~~-----~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~ 194 (367)
T 3euc_A 125 SAQFAGL---EFVGVPLRA--DFTLDRGAMLAAMAEHQ-----PAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSL 194 (367)
T ss_dssp HHHTTTC---EEEEEECCT--TSCCCHHHHHHHHHHHC-----CSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCE
T ss_pred HHHHcCC---eEEEecCCC--CCCCCHHHHHHHhhccC-----CCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcE
Confidence 9999999 999999986 46999999999998731 3478888999999999 4678888889999 999
Q ss_pred EEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCC
Q 041829 266 FHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYK 345 (486)
Q Consensus 266 lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~ 345 (486)
+|+|++|+.+.. ......+. ....+.++.+++|++.....+|+++.+ +............|
T Consensus 195 li~De~~~~~~~--~~~~~~~~-~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~~~~~~~~~--------------- 255 (367)
T 3euc_A 195 VVVDEAYQPFAQ--ESWMSRLT-DFGNLLVMRTVSKLGLAGIRLGYVAGD-PQWLEQLDKVRPPY--------------- 255 (367)
T ss_dssp EEEECTTCCSSS--CCSGGGGG-TCTTEEEEEECCCTTSCSCCEEEEEEC-HHHHHHHGGGCCSS---------------
T ss_pred EEEeCcchhhcc--cchHHHHh-hCCCEEEEecchhhcccccCceeeeeC-HHHHHHHHHhCCCC---------------
Confidence 999999986431 11111111 113446778899994444567887774 33333221111110
Q ss_pred CCccCCCCCCCcHHHHHHHHHhC-hhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHH
Q 041829 346 DWQIPLGRRFRSLKLWMVLRLYG-LENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKL 424 (486)
Q Consensus 346 ~~~~~~sr~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~ 424 (486)
....+..+++...+. .+.++++.++..++++++.+.|+++|++++. ++..+++.+.+. .
T Consensus 256 --------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~--~--------- 315 (367)
T 3euc_A 256 --------NVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP--D--------- 315 (367)
T ss_dssp --------CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS--C---------
T ss_pred --------CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--C---------
Confidence 012333333333332 4567888899999999999999999999854 555566666653 1
Q ss_pred HHHHHHHHHccCcEEEEeee-E--CCEeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q 041829 425 NHKLLDDINSTGKIFISHTV-L--SGKYILRFAVGAPLTEWRHVNAAWEVMQDKA 476 (486)
Q Consensus 425 ~~~l~~~l~~~g~~~~~~~~-~--~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~ 476 (486)
..++.+.|.+.| +.+.+.. + .+..++|+++ + +++|+++++++|+++.
T Consensus 316 ~~~l~~~l~~~g-i~v~~~~~~~~~~~~~iRis~-~---~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 316 AAQTFDRLLARK-VLIKNVSKMHPLLANCLRVTV-S---TPEENAQFLEAFAASL 365 (367)
T ss_dssp HHHHHHHHHTTT-EECEECGGGCGGGTTEEEEEC-C---CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCC-eEEEECCccCCCCCCEEEEec-C---CHHHHHHHHHHHHHHh
Confidence 145777787777 4444432 1 2246899998 3 8999999999998764
No 91
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.91 E-value=9.5e-24 Score=212.77 Aligned_cols=334 Identities=12% Similarity=0.091 Sum_probs=224.2
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCC-CeEEcCchhHHHHHHHHHHHHHHHHHhC
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQG-GGVIQGTASEAVLVVLLAARDKALKRVG 169 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~~~ 169 (486)
..+.+.+...+......|...++..++++++.+|+.+.+|.+.+ .. ..++|+|||+++..++.+...
T Consensus 41 ~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~-----~~~~v~~t~g~~~al~~~~~~~~~------- 108 (411)
T 2o0r_A 41 PKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYD-----PETEVLVTVGATEAIAAAVLGLVE------- 108 (411)
T ss_dssp HHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC-----TTTSEEEEEHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCC-----CCceEEEeCCHHHHHHHHHHHhcC-------
Confidence 34555555555433334555566789999999999999886532 12 489999999999888876532
Q ss_pred ccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCC-CCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 170 KNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSS-TNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 170 ~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~-~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
+++.|+++..+|.++..+++..|. +++.+|++++ .+|.+|+++|++++++. +.+|+++.++|++|.
T Consensus 109 ----~gd~Vl~~~~~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~~~nptG~ 175 (411)
T 2o0r_A 109 ----PGSEVLLIEPFYDSYSPVVAMAGA---HRVTVPLVPDGRGFALDADALRRAVTPR------TRALIINSPHNPTGA 175 (411)
T ss_dssp ----TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEEETTEEECCHHHHHHHCCTT------EEEEEEESSCTTTCC
T ss_pred ----CCCEEEEeCCCcHhHHHHHHHcCC---EEEEeeccccccCCCCCHHHHHHhhccC------ceEEEEeCCCCCCCC
Confidence 567888999999999999999999 9999998753 23679999999988532 567888899999999
Q ss_pred cCC---hHHHHHHHHHhCCEEEeeccccchhccCccchhc--ccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHH
Q 041829 249 VDP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQY--IDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQ 322 (486)
Q Consensus 249 id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~--~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~ 322 (486)
+-| +++|+++|+++|+++++|++|+++.......... +.+....|.++.++||+++.| ..+|+++++ ++...
T Consensus 176 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~- 253 (411)
T 2o0r_A 176 VLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGP-AELIA- 253 (411)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECC-HHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeC-HHHHH-
Confidence 965 5999999999999999999998754321111111 111235789999999998744 238888875 33322
Q ss_pred HhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Q 041829 323 SLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPR 402 (486)
Q Consensus 323 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~ 402 (486)
.+.....+.. + .........+..+++. +.+.++++.++..++++++.+.|++. ++++..+.
T Consensus 254 ~l~~~~~~~~--------------~---~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 314 (411)
T 2o0r_A 254 GVRAAKQYLS--------------Y---VGGAPFQPAVALALDT-EDAWVAALRNSLRARRDRLAAGLTEI-GFAVHDSY 314 (411)
T ss_dssp HHHHHHHHHT--------------S---CCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCC
T ss_pred HHHHHHhhcc--------------C---CCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecCCC
Confidence 2211111100 0 0111122233444443 46778888899999999999999987 88876443
Q ss_pred CceEEEEEecCCCCCcccchHHHHHHHHHHH-ccCcEEEEeeeE---C----------CEeEEEEEecCCCCCHHHHHHH
Q 041829 403 IFSLVCFRLLPPHNDEDHGNKLNHKLLDDIN-STGKIFISHTVL---S----------GKYILRFAVGAPLTEWRHVNAA 468 (486)
Q Consensus 403 ~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~---~----------~~~~lRi~~~~~~~t~~di~~~ 468 (486)
...++++.+..... .+ ..++.++|. +.|..+..+..+ . +..++|+++ . +++++++++
T Consensus 315 ~g~~~~~~~~~~~~----~~--~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~-~--~~~e~i~~~ 385 (411)
T 2o0r_A 315 GTYFLCADPRPLGY----DD--STEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTF-C--KRDDTLDEA 385 (411)
T ss_dssp BSSEEEEECGGGTC----CC--HHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEEC-C--SCHHHHHHH
T ss_pred eeEEEEEecCCCCC----CC--HHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEe-c--CCHHHHHHH
Confidence 33356677643100 01 245667666 457443332222 1 346899998 3 389999999
Q ss_pred HHHHHHHHHHH
Q 041829 469 WEVMQDKASAL 479 (486)
Q Consensus 469 ~~~l~~~~~~l 479 (486)
+++|+++.++.
T Consensus 386 ~~~l~~~~~~~ 396 (411)
T 2o0r_A 386 IRRLSVLAERP 396 (411)
T ss_dssp HHHHGGGGC--
T ss_pred HHHHHHHHhcc
Confidence 99998876543
No 92
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.91 E-value=1.1e-22 Score=203.03 Aligned_cols=291 Identities=13% Similarity=0.103 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHh
Q 041829 116 ELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIG 195 (486)
Q Consensus 116 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 195 (486)
....++.+.+++++|.+. .+++++||+++..++.+... +++.|+++...|.++..+++..
T Consensus 84 ~~~~~l~~~la~~~g~~~---------~i~~~sGt~a~~~~~~~~~~-----------~gd~v~~~~~~~~~~~~~~~~~ 143 (384)
T 1bs0_A 84 VVHQALEEELAEWLGYSR---------ALLFISGFAANQAVIAAMMA-----------KEDRIAADRLSHASLLEAASLS 143 (384)
T ss_dssp HHHHHHHHHHHHHHTCSE---------EEEESCHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCCc---------EEEeCCcHHHHHHHHHHhCC-----------CCcEEEEcccccHHHHHHHHHc
Confidence 344445555888888763 57777779999887765432 5678889999999999999999
Q ss_pred CCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccch
Q 041829 196 GIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGS 275 (486)
Q Consensus 196 g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~ 275 (486)
|. +++.+|. +|+++|++++++.. ..+.+|+++.++|++|.+.|+++|.++|+++|+++|+|++|+.+
T Consensus 144 g~---~~~~~~~-------~d~~~l~~~l~~~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~ 210 (384)
T 1bs0_A 144 PS---QLRRFAH-------NDVTHLARLLASPC---PGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTG 210 (384)
T ss_dssp SS---EEEEECT-------TCHHHHHHHHHSCC---SSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CC---CEEEeCC-------CCHHHHHHHHHhcC---CCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccc
Confidence 98 8888873 48999999886532 12467888889999999999999999999999999999999754
Q ss_pred hcc-C-ccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCC
Q 041829 276 ACI-C-PEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGR 353 (486)
Q Consensus 276 ~~~-~-~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr 353 (486)
... . ...... .+ ...|.++.++||+++ |.| |+++.+ ++.+.........|.. +.
T Consensus 211 ~~~~~~~~~~~~-~~-~~~di~~~s~sK~~~-~~G-G~~~~~-~~~~~~l~~~~~~~~~-------------------~~ 266 (384)
T 1bs0_A 211 VIGEQGRGSCWL-QK-VKPELLVVTFGKGFG-VSG-AAVLCS-STVADYLLQFARHLIY-------------------ST 266 (384)
T ss_dssp TSSGGGCCHHHH-TT-CCCSEEEEESSSTTS-SCC-EEEEEC-HHHHHHHHHHCHHHHS-------------------SB
T ss_pred eecCCCCchHHh-cC-CCCcEEEeeccchhh-ccC-cEEEeC-HHHHHHHHHhchhhhc-------------------CC
Confidence 321 0 001111 11 257899999999998 545 887775 4333322111112211 00
Q ss_pred CCCcH---HHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHH
Q 041829 354 RFRSL---KLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLD 430 (486)
Q Consensus 354 ~~~~l---~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~ 430 (486)
....+ .+..+++.+.....+++.++..++++++.+.|+++ ++++. ++..+++++.+.. .....++.+
T Consensus 267 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~--------~~~~~~l~~ 336 (384)
T 1bs0_A 267 SMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLA-DSCSAIQPLIVGD--------NSRALQLAE 336 (384)
T ss_dssp CCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEEC-SCCSSBCCEEEES--------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCccc-CCCCCEEEEEeCC--------HHHHHHHHH
Confidence 11222 23344444321155678889999999999999998 78876 3555666677642 223467888
Q ss_pred HHHccCcEEEEeeeE----CCEeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 431 DINSTGKIFISHTVL----SGKYILRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 431 ~l~~~g~~~~~~~~~----~~~~~lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
.|.++| +.+.+... .+..++|+++ +..++++|+++++++|+++
T Consensus 337 ~l~~~g-i~v~~~~~~~~~~~~~~~Ri~~-~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 337 KLRQQG-CWVTAIRPPTVPAGTARLRLTL-TAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp HHHHTT-EECCEECTTSSCTTCEEECCBC-CTTCCHHHHHHHHHHHHHH
T ss_pred HHHHCC-cEEEeecCCCCCCCCceEEEEE-cCCCCHHHHHHHHHHHHhh
Confidence 888887 55544322 2347999999 7778999999999999875
No 93
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.91 E-value=6.7e-25 Score=217.50 Aligned_cols=308 Identities=13% Similarity=0.044 Sum_probs=196.6
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEE-cCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhH
Q 041829 110 TSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVI-QGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSAL 188 (486)
Q Consensus 110 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~-t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~ 188 (486)
.++.+.++-+++++.+++++|.++++ +.+| |+|||+++.+++..... +++.+++....|++.
T Consensus 66 ~~~~~~~~~~~ar~~la~ll~~~~~~------evif~t~~~T~a~n~ai~~l~~-----------~gd~v~~~~~~~~~~ 128 (386)
T 3qm2_A 66 RGKEFIQVAEEAEQDFRDLLNIPSNY------KVLFCHGGGRGQFAGVPLNLLG-----------DKTTADYVDAGYWAA 128 (386)
T ss_dssp -------CCHHHHHHHHHHHTCCTTE------EEEEEESCTTHHHHHHHHHHCT-----------TCCEEEEEESSHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCc------eEEEEcCCchHHHHHHHHhccC-----------CCCeEEEEeCCHHHH
Confidence 35666777788899999999997531 4777 69999999888764421 334443333345443
Q ss_pred HHHHHHh-CCCCCCeEEEeCC--CCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc-CChHHHHHHHHHhCC
Q 041829 189 QKACQIG-GIHPQNFRVLKTD--SSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV-DPLLALGNIAKSNGM 264 (486)
Q Consensus 189 ~~a~~~~-g~g~~~v~~v~~~--~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i-d~l~~I~~ia~~~g~ 264 (486)
.+...+ ..| ++..+|++ ..+ ..++++++++++++++ .+|.+++.+|.+|.+ +|+++|+ +|+
T Consensus 129 -~~~~~a~~~G--~v~~v~~~~~~~G-~~~~~~~~~~~l~~~t------~lV~~~h~et~tG~~i~pi~~i~-----~g~ 193 (386)
T 3qm2_A 129 -SAIKEAKKYC--APQIIDAKITVDG-KRAVKPMREWQLSDNA------AYLHYCPNETIDGIAIDETPDFG-----PEV 193 (386)
T ss_dssp -HHHHHHTTTS--EEEEEECEEEETT-EEEECCGGGCCCCTTC------SCEEECSEETTTTEECCCCCCCC-----TTC
T ss_pred -HHHHHHHHhC--CeEEEecCcccCC-CCCCchHHHhhcCCCC------cEEEEECCcCCcCEecCchhhhc-----CCC
Confidence 222222 224 58889987 333 2388888887776543 468889999999995 9999996 799
Q ss_pred EEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCC
Q 041829 265 WFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDY 344 (486)
Q Consensus 265 ~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~ 344 (486)
++|||++++.+....+- +..|.+++++|||++ |.|+|++++|+.. +.+.....+.++.-...... .
T Consensus 194 ~~~vDa~qs~g~~pidv--------~~~~~~~~s~hK~lG-P~G~g~l~v~~~~-~~~~~~~~p~~~~~~~~~~~---~- 259 (386)
T 3qm2_A 194 VVTADFSSTILSAPLDV--------SRYGVIYAGAQKNIG-PAGLTLVIVREDL-LGKAHESCPSILDYTVLNDN---D- 259 (386)
T ss_dssp CEEEECTTTTTSSCCCG--------GGCSEEEEETTTTTC-CTTEEEEEEEGGG-CSCCCTTSCGGGCHHHHHHC-----
T ss_pred EEEEEcccccCCCCCCc--------cccCEEEEecccccC-CCccEEEEECHHH-HhhhcccCCcHHHHHHHhhc---C-
Confidence 99999999877765542 133567899999995 9999999999753 11111111222210000000 0
Q ss_pred CCCccCCCCC-CCcHHHHHHHHHhChh-hHHHHHHHHHHHHHHHHHHHhcCCCe-EEecCC--C-ceEEEEEecCCCCCc
Q 041829 345 KDWQIPLGRR-FRSLKLWMVLRLYGLE-NLQGYIRNHIQLAKHFEGLVAQDLRF-EVVTPR--I-FSLVCFRLLPPHNDE 418 (486)
Q Consensus 345 ~~~~~~~sr~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~l~~~~~~-~~~~~~--~-~~~v~f~~~~~~~~~ 418 (486)
....+.. +....+-.+++.+-.+ |++++.++..++++++++.|+++ ++ ....++ . ..+++|.++..+
T Consensus 260 ---~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~~~~--- 332 (386)
T 3qm2_A 260 ---SMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPFQLADNT--- 332 (386)
T ss_dssp ---------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEEEESSGG---
T ss_pred ---CCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEEECCCcc---
Confidence 0001111 2335666777777667 89999999999999999999998 55 332222 2 358899986311
Q ss_pred ccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 419 DHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 419 ~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
.+ ..+...|.+.|.+...+. ...+.+|+++ ..++|++|||+++++|+++.++
T Consensus 333 --~~---~~~~~~L~~~gI~~~~g~--~~~~~iRiS~-~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 333 --LD---KVFLEESFAAGLHALKGH--RVVGGMRASI-YNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp --GH---HHHHHHHHHTTEECCBCC--TTTCSEEEEC-CTTSCHHHHHHHHHHHHHHHHH
T ss_pred --cc---HHHHHHHHHCCCEEeCCC--CCcCeEEEEc-CCCCCHHHHHHHHHHHHHHHHh
Confidence 11 456666777774322221 1123599999 8899999999999999998764
No 94
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.91 E-value=7.5e-23 Score=208.56 Aligned_cols=315 Identities=12% Similarity=0.049 Sum_probs=191.4
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHH
Q 041829 110 TSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQ 189 (486)
Q Consensus 110 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 189 (486)
..+...++|+.++++++++||.+.+.. +..++++|||+||..++.+..+ +++.|+++...|.+..
T Consensus 94 G~~~~~~lE~~a~~~~a~l~g~~~~~~----~~~v~~~sGt~An~~al~al~~-----------pGD~Vl~~~~~h~g~l 158 (490)
T 2a7v_A 94 GAEVVDEIELLCQRRALEAFDLDPAQW----GVNVQPYSGSPANLAVYTALLQ-----------PHDRIMGLDLPDGGHL 158 (490)
T ss_dssp ----CTHHHHHHHHHHHHHTTCCTTTE----EEECCCSSHHHHHHHHHHHHCC-----------SCEECCC---------
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcccC----ceEEeCCchHHHHHHHHHHHcC-----------CCCEecccCccccccc
Confidence 345567999999999999999986310 0135667899999998876543 7889999888775422
Q ss_pred --------HHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHH
Q 041829 190 --------KACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKS 261 (486)
Q Consensus 190 --------~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~ 261 (486)
+.+...|... .++.++++++ ++.+|+++|++++++.. |.+|+++.+ .+|...|+++|+++|++
T Consensus 159 ~h~~~~~~~~i~~~g~~~-~~~~~~vd~~-~~~iD~d~le~~l~~~~-----~klIi~~~s--~~~~~~dl~~i~~ia~~ 229 (490)
T 2a7v_A 159 THGYMSDVKRISATSIFF-ESMPYKLNPK-TGLIDYNQLALTARLFR-----PRLIIAGTS--AYARLIDYARMREVCDE 229 (490)
T ss_dssp -----------------------CCBCTT-TCSBCHHHHHHHHHHHC-----CSEEEECCS--SCCSCCCHHHHHHHHHH
T ss_pred cchhhhcchhHHHcCCeE-EEEecccccc-cCCcCHHHHHHHHhhcC-----CcEEEEcCC--CCCCcccHHHHHHHHHH
Confidence 1334555511 2334445543 47999999999997532 445665443 44677899999999999
Q ss_pred hCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCch-------------HHHHHhcCCc
Q 041829 262 NGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRN-------------TLIQSLSTNP 328 (486)
Q Consensus 262 ~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~-------------~~~~~~~~~~ 328 (486)
||+++|+|+||+.+.......... ++++|++++++||++++|.| |+++.++.. .+.+.+.
T Consensus 230 ~g~~livD~Ah~~glv~~g~~~~~---~~~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~~~~~~l~~~i~--- 302 (490)
T 2a7v_A 230 VKAHLLADMAHISGLVAAKVIPSP---FKHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRIN--- 302 (490)
T ss_dssp TTCEEEEECGGGHHHHHTTSSCCG---GGTCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHHH---
T ss_pred cCCEEEEccccccccccCCcCCCC---CCCCCEEEECCcccCccccc-hheeeccchhcccccccchhhHHHHHHHH---
Confidence 999999999987654432222111 23689999999999988865 888887631 0111100
Q ss_pred ccccccccccCCccCCCCCccCCCCCCCc-HHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCceE
Q 041829 329 EFLKNKASQANMVVDYKDWQIPLGRRFRS-LKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTP-RIFSL 406 (486)
Q Consensus 329 ~yl~~~~~~~~~~~~~~~~~~~~sr~~~~-l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~-~~~~~ 406 (486)
..++. +.+++..... .++.++++..-.+.++++.++..+++++|++.|++. |++++.. ...++
T Consensus 303 ~~~~~--------------g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~t~t~l 367 (490)
T 2a7v_A 303 FAVFP--------------SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHL 367 (490)
T ss_dssp HHHTT--------------TTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSE
T ss_pred HHhcc--------------cCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCCCeE
Confidence 00000 1122222111 233334544433466888899999999999999997 9998753 45567
Q ss_pred EEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeE------CCEeEEEEEe---cCCCCCHHHHHHHHHHHHHHHH
Q 041829 407 VCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVL------SGKYILRFAV---GAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 407 v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~------~~~~~lRi~~---~~~~~t~~di~~~~~~l~~~~~ 477 (486)
+.+.+.+.+. + ..++.+.|.+.| +.+....+ .....+|+++ ++...+++|++++++.|.++..
T Consensus 368 v~vdl~~~g~-----~--~~~~~~~L~~~G-I~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 368 VLVDLRPKGL-----D--GARAERVLELVS-ITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp EEEECTTTTC-----C--HHHHHHHHHHTT-EECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCC-----C--HHHHHHHHHhCC-eEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence 7777754321 1 134556666666 55543211 1135799965 2345689999999999988875
Q ss_pred H
Q 041829 478 A 478 (486)
Q Consensus 478 ~ 478 (486)
.
T Consensus 440 ~ 440 (490)
T 2a7v_A 440 I 440 (490)
T ss_dssp H
T ss_pred h
Confidence 3
No 95
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.91 E-value=2.9e-23 Score=207.74 Aligned_cols=330 Identities=15% Similarity=0.098 Sum_probs=211.1
Q ss_pred HHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCC
Q 041829 94 GEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSL 173 (486)
Q Consensus 94 ~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~ 173 (486)
.+.+...+... .+..++...++++. +++++|.+. +++++|||+|+..++.+.+..
T Consensus 23 ~~a~~~~~~~~--~~~~~~~~~~l~~~----la~~~~~~~---------~~~~~~gt~al~~~~~~~~~~---------- 77 (393)
T 1mdo_A 23 LAAVKTVLDSG--WITTGPKNQELEAA----FCRLTGNQY---------AVAVSSATAGMHIALMALGIG---------- 77 (393)
T ss_dssp HHHHHHHHHHT--CCSSSHHHHHHHHH----HHHHHCCSE---------EEEESCHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHhcC--CcCCChHHHHHHHH----HHHHhCCCc---------EEEecChHHHHHHHHHHcCCC----------
Confidence 34454444332 12345666667766 778888652 799999999998888765211
Q ss_pred CCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChH
Q 041829 174 EKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLL 253 (486)
Q Consensus 174 ~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~ 253 (486)
+++.|+++..+|.++..+++..|+ +++.+|++++ ++.+|+++|++++++. +.+|+++ +++|.+.|++
T Consensus 78 ~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~l~~~------~~~v~~~---~~~G~~~~~~ 144 (393)
T 1mdo_A 78 EGDEVITPSMTWVSTLNMIVLLGA---NPVMVDVDRD-TLMVTPEHIEAAITPQ------TKAIIPV---HYAGAPADLD 144 (393)
T ss_dssp TTCEEEEESSSCHHHHHHHHHTTC---EEEEECBCTT-TCCBCHHHHHHHCCTT------EEEECCB---CGGGCCCCHH
T ss_pred CCCEEEeCCCccHhHHHHHHHCCC---EEEEEeccCC-cCCCCHHHHHHhcCCC------ceEEEEe---CCCCCcCCHH
Confidence 567899999999999999999999 9999999864 3789999999998642 3455554 4799999999
Q ss_pred HHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecc--cccCCCCcceEEEEeCchHHHHHhcCCcccc
Q 041829 254 ALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAH--KWFLTNFDCSALWVKDRNTLIQSLSTNPEFL 331 (486)
Q Consensus 254 ~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~h--K~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl 331 (486)
+|.++|+++|+++++|++|+.+..... +.. +. .|.+++++| |++.++ .+|+++.++++.............
T Consensus 145 ~i~~l~~~~~~~li~D~a~~~g~~~~~--~~~--~~--~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~ 217 (393)
T 1mdo_A 145 AIYALGERYGIPVIEDAAHATGTSYKG--RHI--GA--RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGL 217 (393)
T ss_dssp HHHHHHHHHTCCBCEECTTCTTCEETT--EET--TS--SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTE
T ss_pred HHHHHHHHcCCeEEEECccccCCeECC--eec--CC--CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCC
Confidence 999999999999999999985433321 111 11 799999999 999764 467777665544332211111000
Q ss_pred cccccccCCccCCCCCcc---CCCC--CCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC----
Q 041829 332 KNKASQANMVVDYKDWQI---PLGR--RFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPR---- 402 (486)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~---~~sr--~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~---- 402 (486)
.... .........+.. ..|. +...+...+++. ..+++++..++..++++++.+.|++++ +++...+
T Consensus 218 ~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~--~l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~ 292 (393)
T 1mdo_A 218 GVDA--WDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALA--QLQKLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEH 292 (393)
T ss_dssp ECC-------------CCEESSCCCBCCCCHHHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCE
T ss_pred cccc--hhhhcccccccccccccCccCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCC
Confidence 0000 000000001111 1111 223343333333 345678888889999999999999986 8875332
Q ss_pred --CceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeEC----------------------CEeEEEEEecCC
Q 041829 403 --IFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLS----------------------GKYILRFAVGAP 458 (486)
Q Consensus 403 --~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~----------------------~~~~lRi~~~~~ 458 (486)
...++++++.... ......++.+.|.+.|.. +.+.... +..++|+++ +.
T Consensus 293 ~~~~~~~~v~~~~~~-----~~~~~~~l~~~l~~~gi~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~-~~ 365 (393)
T 1mdo_A 293 IHAWHLFIIRVDEAR-----CGITRDALMASLKTKGIG-TGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPL-FP 365 (393)
T ss_dssp ECCCSCEEEECCHHH-----HSSCHHHHHHHHHHTTBC-CBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECC-CT
T ss_pred CceeEEEEEEecccc-----cccCHHHHHHHHHhCCCC-cccccCccccChhhhccCCccCChhHHHHHhCEEEecC-CC
Confidence 2335677764100 000125677778877743 3322100 123799998 88
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 041829 459 LTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 459 ~~t~~di~~~~~~l~~~~~~l~ 480 (486)
.+|++|+++++++|+++.+...
T Consensus 366 ~~t~~~i~~~~~~l~~~~~~~~ 387 (393)
T 1mdo_A 366 DMTESDFDRVITALHQIAGQGS 387 (393)
T ss_dssp TCCHHHHHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999998876543
No 96
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.91 E-value=1e-23 Score=212.04 Aligned_cols=328 Identities=13% Similarity=0.052 Sum_probs=214.9
Q ss_pred HHHHHHHHHHhcCc-Cccccc------cChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHH
Q 041829 90 AGFLGEMLSAGLNI-VGFSWI------TSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARD 162 (486)
Q Consensus 90 ~~~~~~~l~~~~n~-~~~~~~------~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~ 162 (486)
+..+.+.+...+.. ....|. ..+....+|+.+.+++++++|.+.. .+++++||+|+..++.++..
T Consensus 36 ~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~--------~i~~~sGt~a~~~~~~~~~~ 107 (407)
T 2dkj_A 36 SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWA--------NVQPHSGSQANMAVYMALME 107 (407)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcc--------eEEecchHHHHHHHHHHhcC
Confidence 45555666555532 222221 2343447777777899999998753 35566678888888876532
Q ss_pred HHHHHhCccCCCCeEEEecCCCchhH---HHHHHHhCCCCCCeEEEeC--CCCCCCccCHHHHHHHHHHHHhCCCccEEE
Q 041829 163 KALKRVGKNSLEKLVVYASDQTHSAL---QKACQIGGIHPQNFRVLKT--DSSTNYSLSPDSLAEAISRDLTIGLIPFFL 237 (486)
Q Consensus 163 ~~~~~~~~~~~~~~~v~~s~~~H~s~---~~a~~~~g~g~~~v~~v~~--~~~~~~~id~~~L~~~i~~~~~~g~~p~~v 237 (486)
+++.|+++..+|.++ ..+++..|. .++.+++ +++ ++.+|+++|++++++.. +.+|
T Consensus 108 -----------~gd~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~-~~~~d~~~l~~~l~~~~-----~~~v 167 (407)
T 2dkj_A 108 -----------PGDTLMGMDLAAGGHLTHGSRVNFSGK---LYKVVSYGVRPD-TELIDLEEVRRLALEHR-----PKVI 167 (407)
T ss_dssp -----------TTCEEEEECGGGTCCGGGTCTTSHHHH---HSEEEEECCCTT-TSSCCHHHHHHHHHHHC-----CSEE
T ss_pred -----------CCCEEEEecccccCccchHHHHHhcCc---eEEEEecCCCcc-cCccCHHHHHHHHhhcC-----CeEE
Confidence 567888898899877 355555565 4455555 332 47899999999997521 3456
Q ss_pred EEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCc
Q 041829 238 CATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDR 317 (486)
Q Consensus 238 v~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~ 317 (486)
+++.+++ |.+.|+++|.++|+++|+++|+|++|+.+....+.... .++..|+++.++||++.++.+ |+++++++
T Consensus 168 ~~~~p~~--~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~~~~di~~~s~sK~l~g~~~-G~~~~~~~ 241 (407)
T 2dkj_A 168 VAGASAY--PRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN---PLPYAHVVTSTTHKTLRGPRG-GLILSNDP 241 (407)
T ss_dssp EECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC---CTTTCSEEEEESSGGGCCCSC-EEEEESCH
T ss_pred EEecccc--CCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCC---ccccccEEEEeccccCCCCCc-eEEEECCH
Confidence 6655555 47889999999999999999999999874443222111 123479999999999988875 88888754
Q ss_pred hHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCC-cHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCe
Q 041829 318 NTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFR-SLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRF 396 (486)
Q Consensus 318 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~-~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~ 396 (486)
+...........+. ..+.... ...+.++++....++++++.++..++++++.+.|+++ ++
T Consensus 242 ~~~~~l~~~~~~~~------------------~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 302 (407)
T 2dkj_A 242 ELGKRIDKLIFPGI------------------QGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GY 302 (407)
T ss_dssp HHHHHHHHHHTTTT------------------CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHhhhcccc------------------cCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-Cc
Confidence 43322111100110 0111111 1244455655445688899999999999999999998 89
Q ss_pred EEecC-CCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeE-------CCEeEEEEEecCC---CCCHHHH
Q 041829 397 EVVTP-RIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVL-------SGKYILRFAVGAP---LTEWRHV 465 (486)
Q Consensus 397 ~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-------~~~~~lRi~~~~~---~~t~~di 465 (486)
+++.+ +..+++++.+...+ .+ ..++.+.|.+.| +.+.+... ....++|+++... ..+++|+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~l~~~g-i~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i 374 (407)
T 2dkj_A 303 RIVTGGTDNHLFLVDLRPKG-----LT--GKEAEERLDAVG-ITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEM 374 (407)
T ss_dssp EEGGGSCSSSEEEEECGGGT-----CC--HHHHHHHHHHTT-EECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGH
T ss_pred eeecCCCCceEEEEECcccC-----CC--HHHHHHHHHHcC-ceecCCcCccccccccCCCceeeecccccccCCCHHHH
Confidence 88753 45677788775311 01 245677777777 44443321 1245899998321 3789999
Q ss_pred HHHHHHHHHHHHH
Q 041829 466 NAAWEVMQDKASA 478 (486)
Q Consensus 466 ~~~~~~l~~~~~~ 478 (486)
++++++|+++.++
T Consensus 375 ~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 375 PLVAELIDRALLE 387 (407)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988776
No 97
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.91 E-value=2.5e-23 Score=209.92 Aligned_cols=342 Identities=11% Similarity=0.062 Sum_probs=220.7
Q ss_pred HHHHHHHHHhcCcC-ccccccChhhHHHHHHHHHHHHHHc------CCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHH
Q 041829 91 GFLGEMLSAGLNIV-GFSWITSPAATELEMIVLDWLAKLL------KLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDK 163 (486)
Q Consensus 91 ~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~la~l~------g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~ 163 (486)
..+.+.+...+... ...|....+..++++++.+|+.+.+ |.+.+ ....++|+|||+++..++.+...
T Consensus 53 ~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~-----~~~v~~~~g~~~al~~~~~~l~~- 126 (416)
T 1bw0_A 53 AAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV-----KDNVVLCSGGSHGILMAITAICD- 126 (416)
T ss_dssp HHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCC-----GGGEEEESHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCC-----cceEEEeCChHHHHHHHHHHhCC-
Confidence 34444444444322 2344444567889999888887432 32211 12589999999999888776532
Q ss_pred HHHHhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCC
Q 041829 164 ALKRVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGT 243 (486)
Q Consensus 164 ~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~ 243 (486)
+++.|+++..+|.++..+++..|+ +++.+|++++++|.+|+++|++++++. +.+|+++.++
T Consensus 127 ----------~gd~vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~ 187 (416)
T 1bw0_A 127 ----------AGDYALVPQPGFPHYETVCKAYGI---GMHFYNCRPENDWEADLDEIRRLKDDK------TKLLIVTNPS 187 (416)
T ss_dssp ----------TTCEEEEEESCCTHHHHHHHHTTC---EEEEEEEEGGGTTEECHHHHHHHCCTT------EEEEEEESSC
T ss_pred ----------CCCEEEEcCCCcHhHHHHHHHcCc---EEEEeecCcccCCCCCHHHHHHHhccC------CeEEEEeCCC
Confidence 567888899999999999999999 999999875434789999999988643 3567888899
Q ss_pred ccccccCC---hHHHHHHHHHhCCEEEeeccccchhccCc----cchhcccCCcC--CCceeeecccccCCC-CcceEEE
Q 041829 244 TSSTAVDP---LLALGNIAKSNGMWFHVDAAYAGSACICP----EYRQYIDGVEE--ADSFNMNAHKWFLTN-FDCSALW 313 (486)
Q Consensus 244 t~tG~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~----~~~~~~~~~~~--aDs~~~~~hK~l~~p-~~~g~l~ 313 (486)
|+||.+.| +++|+++|++||+++++|++|+.+..... .+.. +..+.. -+.++.+++|+++.| ..+|+++
T Consensus 188 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~ 266 (416)
T 1bw0_A 188 NPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTS-VADFETTVPRVILGGTAKNLVVPGWRLGWLL 266 (416)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCC-TTSSCCSCCEEEEEESTTTTSCGGGCCEEEE
T ss_pred CCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccC-HHHccCCCcEEEEecchhhCCCCCceEEEEE
Confidence 99999988 99999999999999999999987432211 1111 122221 135567899998765 3589998
Q ss_pred EeCc-hHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhc
Q 041829 314 VKDR-NTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQ 392 (486)
Q Consensus 314 ~r~~-~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~ 392 (486)
++++ ..+.........+. .. +. .........+..+++..+.++++++.++..++++++.+.|++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~-~~-------------~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 331 (416)
T 1bw0_A 267 YVDPHGNGPSFLEGLKRVG-ML-------------VC-GPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE 331 (416)
T ss_dssp EECTTCSCHHHHHHHHHHH-HH-------------HT-CSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeCchhhHHHHHHHHHHHh-cc-------------cc-CCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8774 21111100000000 00 00 000111223334444445678889999999999999999999
Q ss_pred CCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHH-ccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHH
Q 041829 393 DLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDIN-STGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEV 471 (486)
Q Consensus 393 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~ 471 (486)
+|++++..+.....+.+++....... .....++.+.|. +.|..+..+..+....++|+++ + ++++++++++++
T Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~-~--~~~e~l~~~l~~ 405 (416)
T 1bw0_A 332 CIGLAPTMPRGAMYLMSRIDLEKYRD---IKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT-T--RPVEVYREAVER 405 (416)
T ss_dssp STTEEECCCCBTTEEEEEECGGGBSS---CCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC-C--SCHHHHHHHHHH
T ss_pred CCCCcccCCCeeEEEEEeCCHHHcCC---CCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEe-c--CCHHHHHHHHHH
Confidence 98998765444455566664210000 001245666664 5674433333333345899999 3 589999999999
Q ss_pred HHHHHHHH
Q 041829 472 MQDKASAL 479 (486)
Q Consensus 472 l~~~~~~l 479 (486)
|.++.++.
T Consensus 406 l~~~l~~~ 413 (416)
T 1bw0_A 406 IKAFCQRH 413 (416)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98887653
No 98
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.91 E-value=5.1e-23 Score=208.58 Aligned_cols=337 Identities=11% Similarity=0.048 Sum_probs=225.0
Q ss_pred HHHHHHHHHhcCc---CccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCC-CeEEcCchhHHHHHHHHHHHHHHHH
Q 041829 91 GFLGEMLSAGLNI---VGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQG-GGVIQGTASEAVLVVLLAARDKALK 166 (486)
Q Consensus 91 ~~~~~~l~~~~n~---~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~ 166 (486)
..+.+.+...++. ....|....+..++++++.+|+.+.+|.+.+ .. ..++|+|||+++..++.++..
T Consensus 53 ~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~-----~~~~v~~~~g~~~a~~~~~~~~~~---- 123 (429)
T 1yiz_A 53 KYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTIN-----PMTEVLVTVGAYEALYATIQGHVD---- 123 (429)
T ss_dssp HHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCC-----TTTSEEEESHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCC-----CcCCEEEecChHHHHHHHHHHhcC----
Confidence 4455566555554 2334544456789999999999998886432 12 489999999999888876533
Q ss_pred HhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCC--------CCccCHHHHHHHHHHHHhCCCccEEEE
Q 041829 167 RVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSST--------NYSLSPDSLAEAISRDLTIGLIPFFLC 238 (486)
Q Consensus 167 ~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~--------~~~id~~~L~~~i~~~~~~g~~p~~vv 238 (486)
+++.|+++..+|.++...++..|. +++.+|.+.++ +|.+|+++|++++++ .+.+|+
T Consensus 124 -------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 187 (429)
T 1yiz_A 124 -------EGDEVIIIEPFFDCYEPMVKAAGG---IPRFIPLKPNKTGGTISSADWVLDNNELEALFNE------KTKMII 187 (429)
T ss_dssp -------TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCT------TEEEEE
T ss_pred -------CCCEEEEcCCCchhHHHHHHHcCC---EEEEEeCCcccccccccccCcccCHHHHHHHhcc------CceEEE
Confidence 567788899999999999999999 99999987642 478999999998853 256788
Q ss_pred EecCCccccccCC---hHHHHHHHHHhCCEEEeeccccchhccCccchhc--ccCCcCCCceeeecccccCCC-CcceEE
Q 041829 239 ATVGTTSSTAVDP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQY--IDGVEEADSFNMNAHKWFLTN-FDCSAL 312 (486)
Q Consensus 239 ~~~~~t~tG~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~--~~~~~~aDs~~~~~hK~l~~p-~~~g~l 312 (486)
++.++|++|.+-| +++|+++|++||+++++|++|+++.......... +.+..+.|.+..++||+++.| ..+|++
T Consensus 188 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~ 267 (429)
T 1yiz_A 188 INTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWA 267 (429)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEE
T ss_pred ECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEE
Confidence 8899999999975 9999999999999999999998754321111111 111235788899999998743 338888
Q ss_pred EEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh----C--hhhHHHHHHHHHHHHHHH
Q 041829 313 WVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY----G--LENLQGYIRNHIQLAKHF 386 (486)
Q Consensus 313 ~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~----g--~~g~~~~~~~~~~~a~~l 386 (486)
++++ ..+. .+.....+. .+ +........+..+++.. + .+.+++..++..++++++
T Consensus 268 ~~~~-~~~~-~l~~~~~~~--------------~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 328 (429)
T 1yiz_A 268 YGPE-ALLK-NLQMVHQNC--------------VY---TCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYM 328 (429)
T ss_dssp ESCH-HHHH-HHHHHHHTT--------------TC---CCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHH
T ss_pred EeCH-HHHH-HHHHHHhhc--------------cc---CCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHH
Confidence 8764 3222 221110000 00 00011122334445441 4 556788888899999999
Q ss_pred HHHHhcCCCeEEecCCCceEEEEEecCCCCC----cccchHHHHHHHHHHH-ccCcEEEEee-eEC-------CEeEEEE
Q 041829 387 EGLVAQDLRFEVVTPRIFSLVCFRLLPPHND----EDHGNKLNHKLLDDIN-STGKIFISHT-VLS-------GKYILRF 453 (486)
Q Consensus 387 ~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~----~~~~~~~~~~l~~~l~-~~g~~~~~~~-~~~-------~~~~lRi 453 (486)
.+.|+++ ++++..+....++++++...... .........++.++|. +.| +.+.+. .+. +..++|+
T Consensus 329 ~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g-v~v~~g~~f~~~~~~~~~~~~iRi 406 (429)
T 1yiz_A 329 ASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVG-LQGIPPSAFYSEPNKHLGEDFVRY 406 (429)
T ss_dssp HHHHHHH-TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTS-EECBCGGGGSCGGGGGGTTTEEEE
T ss_pred HHHHHhC-CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCC-EEEeCchHhCCCcccCCCCCeEEE
Confidence 9999987 78876544445667776431000 0000012356777776 466 555443 222 1468999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 041829 454 AVGAPLTEWRHVNAAWEVMQDKA 476 (486)
Q Consensus 454 ~~~~~~~t~~di~~~~~~l~~~~ 476 (486)
++ . +++++|++++++|+++.
T Consensus 407 s~-~--~~~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 407 CF-F--KKDENLQKAAEILRKWK 426 (429)
T ss_dssp EC-C--SCHHHHHHHHHHHHHHS
T ss_pred Ee-c--CCHHHHHHHHHHHHHhc
Confidence 99 3 48999999999998764
No 99
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.91 E-value=3.1e-23 Score=208.24 Aligned_cols=323 Identities=14% Similarity=0.041 Sum_probs=213.0
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCc
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGK 170 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 170 (486)
..+.+.+...+... .|..++...++++. +++++|.+. .+++++||+|+..++.+++..
T Consensus 44 ~~v~~a~~~~~~~~--~y~~~~~~~~l~~~----la~~~~~~~---------~v~~~~Gt~a~~~~l~~~~~~------- 101 (399)
T 2oga_A 44 AETDAAIARVLDSG--RYLLGPELEGFEAE----FAAYCETDH---------AVGVNSGMDALQLALRGLGIG------- 101 (399)
T ss_dssp HHHHHHHHHHHHHT--CCSSSHHHHHHHHH----HHHHTTSSE---------EEEESCHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHhcC--CCCCchhHHHHHHH----HHHHHCCCe---------EEEecCHHHHHHHHHHHhCCC-------
Confidence 34444454444332 34445666666666 888888753 688899999998888765211
Q ss_pred cCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC
Q 041829 171 NSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD 250 (486)
Q Consensus 171 ~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id 250 (486)
+++.|+++..+|.++..+++..|+ +++.+|++++ ++.+|+++|++++++. +.+|+ +++++|.+.
T Consensus 102 ---~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~i~~~------~~~v~---~~n~tG~~~ 165 (399)
T 2oga_A 102 ---PGDEVIVPSHTYIASWLAVSATGA---TPVPVEPHED-HPTLDPLLVEKAITPR------TRALL---PVHLYGHPA 165 (399)
T ss_dssp ---TTCEEEEESSSCTHHHHHHHHTTC---EEEEECBCSS-SSSBCHHHHHHHCCTT------EEEEC---CBCGGGCCC
T ss_pred ---CcCEEEECCCccHHHHHHHHHCCC---EEEEEecCCC-CCCcCHHHHHHhcCCC------CeEEE---EeCCcCCcc
Confidence 567888899999999999999999 9999999864 4789999999988643 34444 467899999
Q ss_pred ChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecc--cccCCCCcceEEEEeCchHHHHHhcCC-
Q 041829 251 PLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAH--KWFLTNFDCSALWVKDRNTLIQSLSTN- 327 (486)
Q Consensus 251 ~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~h--K~l~~p~~~g~l~~r~~~~~~~~~~~~- 327 (486)
|+++|.++|+++|+++|+|++|+.+.... .... . ...|.+++++| |+++.|..+|+++.++++.........
T Consensus 166 ~l~~i~~l~~~~~~~li~Dea~~~g~~~~--~~~~-~--~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~ 240 (399)
T 2oga_A 166 DMDALRELADRHGLHIVEDAAQAHGARYR--GRRI-G--AGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRN 240 (399)
T ss_dssp CHHHHHHHHHHHTCEECEECTTCTTCEET--TEET-T--CTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHB
T ss_pred CHHHHHHHHHHcCCEEEEECcccccCccC--Ceec-c--cccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHh
Confidence 99999999999999999999997553321 1111 1 12588899985 999875456777776555433221100
Q ss_pred cccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCc-eE
Q 041829 328 PEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIF-SL 406 (486)
Q Consensus 328 ~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~-~~ 406 (486)
.... ..+.........+...+..++++..+ +.++++.++..++++++.+.|+++|++++...+.. +.
T Consensus 241 ~g~~----------~~~~~~~~g~~~~~~~~~~a~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~ 308 (399)
T 2oga_A 241 YGSR----------QKYSHETKGTNSRLDEMQAAVLRIRL--AHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDP 308 (399)
T ss_dssp TTCS----------STTCCCSCCCBCCCCHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEEC
T ss_pred cCcc----------ccccccccccCCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcc
Confidence 0000 00110011122234555666555433 45567788888899999999999988887543322 21
Q ss_pred --EEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeE---C--------C-------------EeEEEEEecCCCC
Q 041829 407 --VCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVL---S--------G-------------KYILRFAVGAPLT 460 (486)
Q Consensus 407 --v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---~--------~-------------~~~lRi~~~~~~~ 460 (486)
+.|.+... + ..++.+.|.+.|.. +.+... . + ..++|+++ +..+
T Consensus 309 ~~~~~~~~~~-------~--~~~l~~~L~~~gI~-v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~-~~~~ 377 (399)
T 2oga_A 309 VWHLFTVRTE-------R--RDELRSHLDARGID-TLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPI-GPHL 377 (399)
T ss_dssp CCSSEEEECS-------S--HHHHHHHHHHTTBC-CBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECC-STTC
T ss_pred eeEEEEEECC-------C--HHHHHHHHHHCCCc-eecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccC-CCCC
Confidence 12333221 1 24577777777743 332110 0 0 25899998 8899
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 041829 461 EWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 461 t~~di~~~~~~l~~~~~~l 479 (486)
|++|+++++++|+++.+++
T Consensus 378 t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 378 ERPQALRVIDAVREWAERV 396 (399)
T ss_dssp CHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887643
No 100
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.91 E-value=2.3e-22 Score=198.27 Aligned_cols=290 Identities=11% Similarity=0.057 Sum_probs=204.8
Q ss_pred HHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHhCCC
Q 041829 119 MIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIGGIH 198 (486)
Q Consensus 119 ~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g 198 (486)
.++.+++++++|.+.+ ..++|+|||+++..++.+... +++.|+++..+|.++...++..|.
T Consensus 54 ~~l~~~la~~~~~~~~-------~i~~~~g~~~a~~~~~~~l~~-----------~gd~vl~~~~~~~~~~~~~~~~g~- 114 (354)
T 3ly1_A 54 LMLGNKLAAHHQVEAP-------SILLTAGSSEGIRAAIEAYAS-----------LEAQLVIPELTYGDGEHFAKIAGM- 114 (354)
T ss_dssp HHHHHHHHHHTTSCGG-------GEEEESHHHHHHHHHHHHHCC-----------TTCEEEEESSSCTHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhCCChH-------HEEEeCChHHHHHHHHHHHhC-----------CCCeEEECCCCchHHHHHHHHcCC-
Confidence 4455568999998654 589999999999888876532 667888999999999999999999
Q ss_pred CCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHH--hCCEEEeeccccchh
Q 041829 199 PQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKS--NGMWFHVDAAYAGSA 276 (486)
Q Consensus 199 ~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~--~g~~lhvD~A~g~~~ 276 (486)
+++.+|.+++ +.+|+++|++++++. .++.+|+++.++|++|.+.|++++.++++. +|+++++|++|+.+.
T Consensus 115 --~~~~~~~~~~--~~~d~~~l~~~l~~~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~ 186 (354)
T 3ly1_A 115 --KVTKVKMLDN--WAFDIEGLKAAVAAY----SGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFV 186 (354)
T ss_dssp --EEEEECCCTT--SCCCHHHHHHHHHTC----SSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGC
T ss_pred --EEEEecCCCC--CCCCHHHHHHHhccC----CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhc
Confidence 9999998853 699999999999731 125688889999999999999988888887 999999999998654
Q ss_pred ccCc--cchhcccCCcCCCceeeecccccC-CCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCC
Q 041829 277 CICP--EYRQYIDGVEEADSFNMNAHKWFL-TNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGR 353 (486)
Q Consensus 277 ~~~~--~~~~~~~~~~~aDs~~~~~hK~l~-~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr 353 (486)
.... ............+.++.++||+++ .+..+|+++.. +.... .+.....+ .
T Consensus 187 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~-~~~~~~~~--------------------~-- 242 (354)
T 3ly1_A 187 NDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAH-PTVIA-LMGRYVAG--------------------E-- 242 (354)
T ss_dssp CCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECC-HHHHH-HHGGGTTC--------------------S--
T ss_pred cccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecC-HHHHH-HHHHhcCC--------------------C--
Confidence 3211 111111111134577889999997 44567887763 33332 22111000 0
Q ss_pred CCCcHHHHHHHHHhC-hhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHH
Q 041829 354 RFRSLKLWMVLRLYG-LENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDI 432 (486)
Q Consensus 354 ~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l 432 (486)
....+..+++...+. .+.++++.++..++++++.+.|+++ ++++. ++..+++.+.+.. ...++.+.|
T Consensus 243 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~-~~~~~~~~~~~~~----------~~~~~~~~l 310 (354)
T 3ly1_A 243 KINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL-KLPYL-PSEGNFVFHQLVV----------PLKDYQTHM 310 (354)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECSS----------CHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCCceEEEEECCC----------CHHHHHHHH
Confidence 112334444444432 3567888889999999999999987 77765 4555666666642 124677777
Q ss_pred HccCcEEEEeeeE-CCEeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041829 433 NSTGKIFISHTVL-SGKYILRFAVGAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 433 ~~~g~~~~~~~~~-~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 477 (486)
.+.| +.+. ..+ .+..++|+++ + +++|+++++++|+++.+
T Consensus 311 ~~~g-i~v~-g~~~~~~~~iRis~-~---~~~~i~~~~~~l~~~l~ 350 (354)
T 3ly1_A 311 ADAG-VLIG-RAFPPADNWCRISL-G---TPQEMQWVADTMREFRK 350 (354)
T ss_dssp HHTT-EECC-CCCTTCTTEEEEEC-C---CHHHHHHHHHHHHHHHH
T ss_pred HHCC-EEEe-ecCCCCCCEEEEEc-C---CHHHHHHHHHHHHHHHH
Confidence 7777 4455 333 2456899998 3 78999999999998765
No 101
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.91 E-value=3.8e-23 Score=206.53 Aligned_cols=324 Identities=13% Similarity=0.071 Sum_probs=215.7
Q ss_pred HHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCcc
Q 041829 92 FLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKN 171 (486)
Q Consensus 92 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 171 (486)
.+.+.+...+......|....+..++++++.+|+.+.+|.+.+ ....++|+|||+++..++.+..+
T Consensus 48 ~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~-----~~~i~~t~g~~~al~~~~~~l~~--------- 113 (385)
T 1b5p_A 48 HVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVT-----PEETIVTVGGSQALFNLFQAILD--------- 113 (385)
T ss_dssp HHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCC-----GGGEEEESHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-----hHHEEEcCChHHHHHHHHHHhcC---------
Confidence 3444444444322234544556789999999999998886432 12589999999999888766532
Q ss_pred CCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC
Q 041829 172 SLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP 251 (486)
Q Consensus 172 ~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~ 251 (486)
+++.|+++..+|.++...++..|. +++.+|++++++|.+|+++|++++++. +.+|+++.++|+||.+-+
T Consensus 114 --~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~NPtG~~~~ 182 (385)
T 1b5p_A 114 --PGDEVIVLSPYWVSYPEMVRFAGG---VVVEVETLPEEGFVPDPERVRRAITPR------TKALVVNSPNNPTGAVYP 182 (385)
T ss_dssp --TTCEEEEEESCCTHHHHHHHHTTC---EEEEEECCGGGTTCCCHHHHHTTCCTT------EEEEEEESSCTTTCCCCC
T ss_pred --CCCEEEEcCCCchhHHHHHHHcCC---EEEEeecCcccCCCCCHHHHHHhcCCC------CEEEEEeCCCCCCCCCcC
Confidence 677888899999999999999999 999999986334789999999988542 457888899999999855
Q ss_pred ---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCc-CCCceeeecccccCCC-CcceEEEEeCchHHHHHhcC
Q 041829 252 ---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVE-EADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLST 326 (486)
Q Consensus 252 ---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~-~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~ 326 (486)
+++|+++|+++|+++++|++|+.+.... .... +..+. ..+.+..+++|+++.| ..+|+++.++ ..+. .+..
T Consensus 183 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~-~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~-~~~~-~l~~ 258 (385)
T 1b5p_A 183 KEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFS-PGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPK-EVIK-AMAS 258 (385)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCC-GGGTCTTTEEEEEESTTTTTCGGGCCEEEECCH-HHHH-HHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCC-HHHcCCCCEEEEEechhhcCCcccceEEEEeCH-HHHH-HHHH
Confidence 8999999999999999999998654311 1111 11111 3356778899998755 3388888753 3222 2211
Q ss_pred CcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh-----ChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Q 041829 327 NPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY-----GLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTP 401 (486)
Q Consensus 327 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-----g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 401 (486)
...+. ......+..+++...+ +.+.+++..++..++++++.+.|+++ ++++..
T Consensus 259 ~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~- 316 (385)
T 1b5p_A 259 VSRQS--------------------TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVR- 316 (385)
T ss_dssp HHHTT--------------------TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCC-
T ss_pred HHhhc--------------------cCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecC-
Confidence 00000 0011223333333333 34567778888889999999999987 887654
Q ss_pred CCce-EEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q 041829 402 RIFS-LVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKA 476 (486)
Q Consensus 402 ~~~~-~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~ 476 (486)
|..+ .+...+...+ .+ ..++.+.|.+.|..+..+..+...+++|+++ . ++++++++++++|.++.
T Consensus 317 ~~~~~~~~~~~~~~~-----~~--~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~-~--~~~~~i~~~l~~l~~~l 382 (385)
T 1b5p_A 317 PSGAFYVLMDTSPIA-----PD--EVRAAERLLEAGVAVVPGTDFAAFGHVRLSY-A--TSEENLRKALERFARVL 382 (385)
T ss_dssp CSBTTEEEEECTTTC-----SS--HHHHHHHHHHTTEECEESGGGTCTTEEEEEC-C--SCHHHHHHHHHHGGGGC
T ss_pred CCeeEEEEEecCCCC-----CC--HHHHHHHHHHCCeEEecccccCCCCeEEEEe-c--CCHHHHHHHHHHHHHHH
Confidence 4333 3333443111 11 2467777776774433333332245899998 3 68999999999987654
No 102
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.91 E-value=2.2e-24 Score=219.39 Aligned_cols=290 Identities=11% Similarity=0.041 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHhC
Q 041829 117 LEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIGG 196 (486)
Q Consensus 117 le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g 196 (486)
...++.+++++ +|.+. ..++|+|||+||..++.++.. +++.|+++..+|.++..++...|
T Consensus 58 ~~~~~~~~la~-~g~~~--------~v~~~~G~t~a~~~~~~a~~~-----------~gd~Vlv~~~~h~s~~~~~~~~G 117 (446)
T 2x3l_A 58 VILKSMKQVEK-HSDYD--------GYFLVNGTTSGILSVIQSFSQ-----------KKGDILMARNVHKSVLHALDISQ 117 (446)
T ss_dssp HHHHHHHHHCS-CTTEE--------EEEESSHHHHHHHHHHHTTTT-----------SSSCEEECTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-cCCCc--------eEEEeCCHHHHHHHHHHHhcC-----------CCCEEEEecCccHHHHHHHHHcC
Confidence 44556677999 99874 378999999999998877633 67789999999999999999999
Q ss_pred CCCCCeEEEeC--CCCCC--CccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccc
Q 041829 197 IHPQNFRVLKT--DSSTN--YSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAY 272 (486)
Q Consensus 197 ~g~~~v~~v~~--~~~~~--~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~ 272 (486)
+ +++.++. +++.. +.+|+++| +.++ +.+|+++. +|++|.+.|+++|+++|+++|+|+|+|+||
T Consensus 118 ~---~~~~v~~~~~~~~~~~~~~d~~~l---~~~~------~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~ 184 (446)
T 2x3l_A 118 Q---EGHFIETHQSPLTNHYNKVNLSRL---NNDG------HKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAH 184 (446)
T ss_dssp C---CEEECEEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTT
T ss_pred C---eEEEEeCeeccccCcCCCCCHHHH---cCCC------ceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchh
Confidence 9 9999988 53200 57899887 2222 45777787 667999999999999999999999999999
Q ss_pred cchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCC
Q 041829 273 AGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLG 352 (486)
Q Consensus 273 g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~s 352 (486)
++...+.+. ...... .++|+++.++||+++++.++|++++++...-...+........ ..+
T Consensus 185 ~~~~~f~~~-~~~~~~-~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~-----------------~~s 245 (446)
T 2x3l_A 185 GAHFGLQGF-PDSTLN-YQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQ-----------------TSS 245 (446)
T ss_dssp CTTTTSTTS-CCCGGG-GTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHHS-----------------CSS
T ss_pred hhhhccCCC-CCChHH-cCCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHHc-----------------CCC
Confidence 873323222 111111 1589999999999999989999999875310011110000000 011
Q ss_pred CCCC-cHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHH
Q 041829 353 RRFR-SLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDD 431 (486)
Q Consensus 353 r~~~-~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~ 431 (486)
.... ..++.++++.+...+.+++.++..++++++++. +++++.+.....+++.+.+ .+ ..++.+.
T Consensus 246 ~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~~~~l~i~~~~-------~~--~~~l~~~ 311 (446)
T 2x3l_A 246 PSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK-----GFEMLQVDDPLKLLIKYEG-------FT--GHDIQNW 311 (446)
T ss_dssp CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----TCEEEECSSTTEEEEECTT-------SC--HHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-----CCEECcCCCCeEEEEEeCC-------cC--HHHHHHH
Confidence 1111 123344555554445555777888888888877 7787754333346666542 11 1457777
Q ss_pred HHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 432 INSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 432 l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
|.++| +.+.. .+..++|+++ +..+|++|+ +++++|+++.++
T Consensus 312 L~~~G-I~v~~---~g~~~iRi~~-~~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 312 FMNAH-IYLEL---ADDYQALAIL-PLWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp HHHTT-EEESE---ECSSCEEEEC-CCCCTTCCC-CHHHHHHHHHTC
T ss_pred HHHCC-CEEEe---cCCCEEEEEe-ecCCCHHHH-HHHHHHHHHHHh
Confidence 77786 54431 1335899999 777899999 999999988653
No 103
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.91 E-value=4.9e-22 Score=199.47 Aligned_cols=296 Identities=15% Similarity=0.115 Sum_probs=202.0
Q ss_pred HHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHhCCC
Q 041829 119 MIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIGGIH 198 (486)
Q Consensus 119 ~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g 198 (486)
.++.+.+++++|.+. ..+++ +|+.+|..++.+..... +++.|+++...|.++..+++..|+
T Consensus 94 ~~l~~~la~~~~~~~--------~i~~~-sG~~a~~~~~~~l~~~~---------~gd~Vl~~~~~~~~~~~~~~~~g~- 154 (401)
T 2bwn_A 94 RRLEAEIAGLHQKEA--------ALVFS-SAYNANDATLSTLRVLF---------PGLIIYSDSLNHASMIEGIKRNAG- 154 (401)
T ss_dssp HHHHHHHHHHTTCSE--------EEEES-CHHHHHHHHHHHHHHHS---------TTCEEEEETTCCHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHhCCCc--------EEEEC-CcHHHHHHHHHHHhcCC---------CCCEEEECchhhHHHHHHHHHcCC-
Confidence 334444888888753 25555 45668777766532211 567888999999999999999999
Q ss_pred CCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhcc
Q 041829 199 PQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACI 278 (486)
Q Consensus 199 ~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~ 278 (486)
+++.+|.+ |+++|++++++... .++.+|+++.++|++|.+.|+++|.++|++||+++|+|++|+.+.+
T Consensus 155 --~~~~v~~~-------d~~~le~~l~~~~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~- 222 (401)
T 2bwn_A 155 --PKRIFRHN-------DVAHLRELIAADDP--AAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMY- 222 (401)
T ss_dssp --CEEEECTT-------CHHHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTS-
T ss_pred --eEEEEcCC-------CHHHHHHHHHhhcc--CCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEecccccccc-
Confidence 99999864 78999998875321 2367899999999999999999999999999999999999984332
Q ss_pred Cccchhc--ccCC-cCCCceeeecccccCCCCcceEEEEeCchHHHHHhcC-CcccccccccccCCccCCCCCccCCCC-
Q 041829 279 CPEYRQY--IDGV-EEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLST-NPEFLKNKASQANMVVDYKDWQIPLGR- 353 (486)
Q Consensus 279 ~~~~~~~--~~~~-~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~sr- 353 (486)
.+..... ..++ +..|.+..+++|+++.|. |+++.+ +... +.+.. ..++.. ..+.
T Consensus 223 ~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G--G~~~~~-~~~~-~~l~~~~~~~~~-----------------~~~~~ 281 (401)
T 2bwn_A 223 GPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG--GYIAAS-ARMV-DAVRSYAPGFIF-----------------STSLP 281 (401)
T ss_dssp STTSCCHHHHHTCGGGCSEEEEESSSTTCSCC--EEEEEC-HHHH-HHHHHHCHHHHT-----------------SBCCC
T ss_pred CCCCceeeeccCccccCcEEEeechhhccCCC--CEEecC-HHHH-HHHHHhCcCcee-----------------cCCCC
Confidence 1111111 1122 246888889999998753 666653 3322 22211 111111 1111
Q ss_pred CCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHH
Q 041829 354 RFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDIN 433 (486)
Q Consensus 354 ~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~ 433 (486)
......+..+++.+...+++++.++..++++++.+.|+++ ++++.. +..+++++.+.. .....++.+.|.
T Consensus 282 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~L~ 351 (401)
T 2bwn_A 282 PAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIID-HGSHIVPVVIGD--------PVHTKAVSDMLL 351 (401)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCC-CSSSCEEEECCC--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccC-CCCCeEEEEeCC--------hHHHHHHHHHHH
Confidence 1223345667776666677889999999999999999987 887764 455677777642 223456777775
Q ss_pred -ccCcEEEEeeeE----CCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 434 -STGKIFISHTVL----SGKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 434 -~~g~~~~~~~~~----~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
+.| +.+.+... .+..++|+++ +..++++|+++++++|+++.++
T Consensus 352 ~~~g-i~v~~~~~~~~~~~~~~iRis~-~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 352 SDYG-VYVQPINFPTVPRGTERLRFTP-SPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp HHHC-EECCEECTTTSCTTCCEEEECC-CTTSCHHHHHHHHHHHHHHC--
T ss_pred hcCC-EEEeecCCCCCCCCCceEEEEe-eCCCCHHHHHHHHHHHHHHHHh
Confidence 567 55544322 2345899999 7788999999999999987654
No 104
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.91 E-value=1.1e-22 Score=204.05 Aligned_cols=324 Identities=15% Similarity=0.106 Sum_probs=213.9
Q ss_pred HHHHHHHHHHhcCcC---ccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHH
Q 041829 90 AGFLGEMLSAGLNIV---GFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALK 166 (486)
Q Consensus 90 ~~~~~~~l~~~~n~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~ 166 (486)
+..+.+.+...+... ...|...++..++++. +++++|.+.+ ..++|+||++++..++.+...
T Consensus 49 ~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~----la~~~g~~~~-------~v~~~~g~~~al~~~~~~~~~---- 113 (397)
T 2zyj_A 49 KEEAAEAAARILREKGEVALQYSPTEGYAPLRAF----VAEWIGVRPE-------EVLITTGSQQALDLVGKVFLD---- 113 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHH----HHHHHTSCGG-------GEEEESHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHH----HHHHhCCChh-------hEEEeccHHHHHHHHHHHhCC----
Confidence 344555554444321 1344444566778887 5555576543 589999999998888776532
Q ss_pred HhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEE-EEecCCcc
Q 041829 167 RVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFL-CATVGTTS 245 (486)
Q Consensus 167 ~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~v-v~~~~~t~ 245 (486)
+++.|++...+|.++...++..|. +++.+|.+++ .+|+++|++++++. .+.+| +++.++|+
T Consensus 114 -------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~---~~d~~~l~~~l~~~-----~~~~v~~~~~~~np 175 (397)
T 2zyj_A 114 -------EGSPVLLEAPSYMGAIQAFRLQGP---RFLTVPAGEE---GPDLDALEEVLKRE-----RPRFLYLIPSFQNP 175 (397)
T ss_dssp -------TTCEEEEEESCCHHHHHHHHTTCC---EEEEEEEETT---EECHHHHHHHHHHC-----CCSCEEECCBSCTT
T ss_pred -------CCCEEEEeCCCcHHHHHHHHHcCC---EEEecCcCCC---CCCHHHHHHHHhhc-----CCeEEEECCCCcCC
Confidence 567788888999999999999999 9999998753 49999999999761 12344 56788999
Q ss_pred ccccCCh---HHHHHHHHHhCCEEEeeccccchhccCccchhcccCC--c---CCCceeeecccccCCCCcceEEEEeCc
Q 041829 246 STAVDPL---LALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGV--E---EADSFNMNAHKWFLTNFDCSALWVKDR 317 (486)
Q Consensus 246 tG~id~l---~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~--~---~aDs~~~~~hK~l~~p~~~g~l~~r~~ 317 (486)
||.+-|. ++|+++|+++|+++++|++|+.+......... +..+ . .-..++.++||+++....+|+++.++
T Consensus 176 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~- 253 (397)
T 2zyj_A 176 TGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPS-LFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHP- 253 (397)
T ss_dssp TCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCC-HHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCH-
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCc-hhhhCcccCCCeEEEEecccccccccceeEEEecCH-
Confidence 9999775 58999999999999999999875432111101 1111 1 12266788999999325689888763
Q ss_pred hHHHHHhcC-CcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC--h-hhHHHHHHHHHHHHHHHHHHHhc-
Q 041829 318 NTLIQSLST-NPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG--L-ENLQGYIRNHIQLAKHFEGLVAQ- 392 (486)
Q Consensus 318 ~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--~-~g~~~~~~~~~~~a~~l~~~l~~- 392 (486)
+... .+.. ...+. .+ ...+...++...+. . +.++++.++..++++++.+.|++
T Consensus 254 ~~~~-~l~~~~~~~~-------------------~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 311 (397)
T 2zyj_A 254 EALQ-KLVQAKQGAD-------------------LH--TPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE 311 (397)
T ss_dssp HHHH-HHHHHHHHHH-------------------SS--CCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHhhc-------------------CC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 2211 10100 00 02233333333332 2 45777788888899999999987
Q ss_pred CC-CeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEee-eEC----CEeEEEEEecCCCCCHHHHH
Q 041829 393 DL-RFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHT-VLS----GKYILRFAVGAPLTEWRHVN 466 (486)
Q Consensus 393 ~~-~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~----~~~~lRi~~~~~~~t~~di~ 466 (486)
.| ++++..+....++.+++.. + .+ ..++.+.|.++| +.+.+. .+. +..++|+++. .. ++++++
T Consensus 312 ~~~g~~~~~~~~g~~~~~~~~~-~-----~~--~~~~~~~l~~~g-i~v~~g~~f~~~~~~~~~iRis~~-~~-~~~~i~ 380 (397)
T 2zyj_A 312 VPKEVRYTRPKGGMFVWMELPK-G-----LS--AEGLFRRALEEN-VAFVPGGPFFANGGGENTLRLSYA-TL-DREGIA 380 (397)
T ss_dssp SCTTSEECCCSBSSEEEEECST-T-----CC--HHHHHHHHHHTT-EEEEESGGGCTTSCCTTEEEEECS-SS-CHHHHH
T ss_pred CCCCeEEccCCccEEEEEEcCC-C-----CC--HHHHHHHHHHCC-CEEechHHhcCCCCCCCeEEEEcC-CC-CHHHHH
Confidence 57 6887655555566667642 1 11 256778888887 444443 231 3468999994 33 899999
Q ss_pred HHHHHHHHHHHHHHH
Q 041829 467 AAWEVMQDKASALLA 481 (486)
Q Consensus 467 ~~~~~l~~~~~~l~~ 481 (486)
+++++|+++.+++.+
T Consensus 381 ~~~~~l~~~l~~~~~ 395 (397)
T 2zyj_A 381 EGVRRLGRALKGLLA 395 (397)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
No 105
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.91 E-value=1.7e-22 Score=200.22 Aligned_cols=311 Identities=11% Similarity=0.067 Sum_probs=211.3
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCc
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGK 170 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 170 (486)
..+.+.+...+.. ...|.... ..++++. +++++|.+.+ ..++|+|||+++..++.+...
T Consensus 46 ~~v~~a~~~~~~~-~~~y~~~~-~~~lr~~----la~~~~~~~~-------~v~~~~g~~~a~~~~~~~l~~-------- 104 (365)
T 3get_A 46 PKAIECLRQNANK-AHLYPDDS-MIELKST----LAQKYKVQNE-------NIIIGAGSDQVIEFAIHSKLN-------- 104 (365)
T ss_dssp HHHHHHHHHHGGG-TTSCCCTT-CHHHHHH----HHHHHTCCGG-------GEEEESSHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHh-hccCCCCC-hHHHHHH----HHHHhCCCcc-------eEEECCCHHHHHHHHHHHHhC--------
Confidence 3444555444442 22232222 2455555 8888888654 589999999999888766532
Q ss_pred cCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC
Q 041829 171 NSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD 250 (486)
Q Consensus 171 ~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id 250 (486)
+++.|+++..+|.++...++..|. +++.+|++. .++ +|+++|+++++++ +.+|+++.++|+||.+.
T Consensus 105 ---~gd~vl~~~~~~~~~~~~~~~~g~---~~~~v~~~~-~~~-~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~ 170 (365)
T 3get_A 105 ---SKNAFLQAGVTFAMYEIYAKQCGA---KCYKTQSIT-HNL-DEFKKLYETHKDE------IKLIFLCLPNNPLGECL 170 (365)
T ss_dssp ---TTCEEEECSSCCTHHHHHHHHHTC---EEEECSSSS-CCH-HHHHHHHHHTTTT------EEEEEEESSCTTTCCCC
T ss_pred ---CCCEEEEeCCChHHHHHHHHHcCC---EEEEEecCC-CCC-CCHHHHHHHhCCC------CCEEEEcCCCCCCCCCc
Confidence 677899999999999999999999 999999832 358 9999999998633 56788899999999999
Q ss_pred ChHHHHHHHH--HhCCEEEeeccccchhc--cCccchhccc--CCcCCCceeeecccccCC-CCcceEEEEeCchHHHHH
Q 041829 251 PLLALGNIAK--SNGMWFHVDAAYAGSAC--ICPEYRQYID--GVEEADSFNMNAHKWFLT-NFDCSALWVKDRNTLIQS 323 (486)
Q Consensus 251 ~l~~I~~ia~--~~g~~lhvD~A~g~~~~--~~~~~~~~~~--~~~~aDs~~~~~hK~l~~-p~~~g~l~~r~~~~~~~~ 323 (486)
|++++.++++ ++|+++++|++|+.+.+ .......... +....+.++.++||+++. ...+|+++. +++.....
T Consensus 171 ~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~ 249 (365)
T 3get_A 171 DASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA-NANIISAF 249 (365)
T ss_dssp CHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE-CHHHHHHH
T ss_pred CHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEc-CHHHHHHH
Confidence 9999999888 77999999999986552 1111000000 111345778899999974 456788887 44433322
Q ss_pred hcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh-ChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Q 041829 324 LSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY-GLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPR 402 (486)
Q Consensus 324 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~ 402 (486)
......| + ...+..+++...+ ..+.+++..++..++++++.+.|+++ ++++. ++
T Consensus 250 ~~~~~~~---------------------~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~ 304 (365)
T 3get_A 250 YKLRAPF---------------------N--VSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-NIKII-DS 304 (365)
T ss_dssp HHHSCTT---------------------C--SCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CC
T ss_pred HHhcCCC---------------------C--cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC-CC
Confidence 1111110 0 1223333333333 23668888899999999999999998 88875 45
Q ss_pred CceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q 041829 403 IFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKA 476 (486)
Q Consensus 403 ~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~ 476 (486)
..+++.+.+... ...++.+.|.++| +.+.+...-+..++|+++ + +++|+++++++|+++.
T Consensus 305 ~~~~~~~~~~~~---------~~~~~~~~l~~~g-i~v~~g~~~~~~~iRis~-~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 305 YTNFITYFFDEK---------NSTDLSEKLLKKG-IIIRNLKSYGLNAIRITI-G---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp SSSEEEEECSSS---------CHHHHHHHHHTTT-EECEECGGGTCSEEEEEC-C---CHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCC---------CHHHHHHHHHHCC-EEEEECccCCCCEEEEEc-C---CHHHHHHHHHHHHHHh
Confidence 556666666431 1256778888887 444443221256899998 3 8999999999998764
No 106
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.91 E-value=1.1e-21 Score=194.61 Aligned_cols=293 Identities=13% Similarity=0.064 Sum_probs=207.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHH
Q 041829 114 ATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQ 193 (486)
Q Consensus 114 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 193 (486)
..++++.+.+|+.+.+|++.. ....++|+|+++++..++.+... +++.|+++..+|.++..+++
T Consensus 71 ~~~l~~~la~~l~~~~g~~~~-----~~~v~~~~G~~~al~~~~~~l~~-----------~gd~Vl~~~~~y~~~~~~~~ 134 (369)
T 3cq5_A 71 AVELRDELAAYITKQTGVAVT-----RDNLWAANGSNEILQQLLQAFGG-----------PGRTALGFQPSYSMHPILAK 134 (369)
T ss_dssp CHHHHHHHHHHHHHHHCCCCC-----GGGEEEESHHHHHHHHHHHHHCS-----------TTCEEEEEESSCTHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccCCCC-----hHhEEECCChHHHHHHHHHHhcC-----------CCCEEEEcCCChHHHHHHHH
Confidence 368999999999888776422 12588999999988777765432 56788889999999999999
Q ss_pred HhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeecccc
Q 041829 194 IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYA 273 (486)
Q Consensus 194 ~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g 273 (486)
..|. +++.+|.+. +|.+|+++|++++++. .+.+|+++.++|++|.+.|++++.++|+.+++++++|++|+
T Consensus 135 ~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~ 204 (369)
T 3cq5_A 135 GTHT---EFIAVSRGA--DFRIDMDVALEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYA 204 (369)
T ss_dssp HTTC---EEEEEECCT--TSSCCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTG
T ss_pred HcCC---EEEEecCCc--CCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCch
Confidence 9999 999999764 4689999999999762 13467788999999999999999999999999999999998
Q ss_pred chhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCC
Q 041829 274 GSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLG 352 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~s 352 (486)
.+... .............+.++.++||+++.| ..+|++++++. ... .+...... + +
T Consensus 205 ~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~~~-~l~~~~~~----------------~----~ 261 (369)
T 3cq5_A 205 EFSPS-PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPA-FID-AVMLVRLP----------------Y----H 261 (369)
T ss_dssp GGCCS-CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTH-HHH-HHHTTSCT----------------T----C
T ss_pred hhcCC-cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHH-HHH-HHHHcCCC----------------C----C
Confidence 76532 111111111111457788999999744 34788888653 232 22211100 0 0
Q ss_pred CCCCcHHHHHHHHHh-ChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHH
Q 041829 353 RRFRSLKLWMVLRLY-GLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDD 431 (486)
Q Consensus 353 r~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~ 431 (486)
...+..+++...+ ..+.+++..++..++++++.+.|++. ++++. ++..+++++.+.. + ..++.+.
T Consensus 262 --~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~--------~--~~~l~~~ 327 (369)
T 3cq5_A 262 --LSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-GYAVV-PSESNFVFFGDFS--------D--QHAAWQA 327 (369)
T ss_dssp --SCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TCEEE-CCSSSEEEEECCS--------S--HHHHHHH
T ss_pred --CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC-CCCCeEEEEECCC--------C--HHHHHHH
Confidence 1233334333333 13457788888899999999999884 88876 5556677776531 1 1456777
Q ss_pred HHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q 041829 432 INSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKA 476 (486)
Q Consensus 432 l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~ 476 (486)
|.+.| +.+.+. ....++|+++ . +++|+++++++|+++.
T Consensus 328 l~~~g-i~v~~~--~~~~~iRis~-~---~~~~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 328 FLDRG-VLIRDV--GIAGHLRTTI-G---VPEENDAFLDAAAEII 365 (369)
T ss_dssp HHHTT-EECBCC--SCTTEEEEEC-C---CHHHHHHHHHHHHHHH
T ss_pred HHHCC-EEEEEC--CCCCeEEEEe-C---CHHHHHHHHHHHHHHH
Confidence 77777 555443 2236899998 3 7899999999998875
No 107
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.91 E-value=4e-23 Score=207.29 Aligned_cols=343 Identities=13% Similarity=0.019 Sum_probs=215.3
Q ss_pred CcccccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEE-cCchhHHHHH
Q 041829 77 PNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVI-QGTASEAVLV 155 (486)
Q Consensus 77 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~-t~ggt~a~~~ 155 (486)
|..+.+.+++..++..+.+.+..+.+........+|...++.+++.+++++++|.+.. ...++ |+|||+++..
T Consensus 39 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~------~~i~~~t~g~t~al~~ 112 (398)
T 2fyf_A 39 PRDGRFGSGPSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDG------YEVILGNGGATAFWDA 112 (398)
T ss_dssp CSSCBCCSSSCCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTT------CEEEEEETCHHHHHHH
T ss_pred cCCccccCCCCCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCC------ceEEEeCCchhHHHHH
Confidence 4344455555555555555554421111111134566677888899999999999742 14777 9999999988
Q ss_pred HHHHHHHHHHHHhCccCCCCeEEEecCCCchh-HHHHHHHh--CCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCC
Q 041829 156 VLLAARDKALKRVGKNSLEKLVVYASDQTHSA-LQKACQIG--GIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGL 232 (486)
Q Consensus 156 al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s-~~~a~~~~--g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~ 232 (486)
++.+... ++ +++++...|.. ....+... |. +++.||++. + +..+.+ ++ .
T Consensus 113 ~~~~l~~-----------~g-v~~v~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~-g-~~~~~~-----i~------~ 164 (398)
T 2fyf_A 113 AAFGLID-----------KR-SLHLTYGEFSAKFASAVSKNPFVG---EPIIITSDP-G-SAPEPQ-----TD------P 164 (398)
T ss_dssp HHHHTCS-----------SC-EEEEECSHHHHHHHHHHHHCTTSC---CCEEEECCT-T-CCCCCC-----CC------T
T ss_pred HHHHhcC-----------CC-eEEEeCCHHHHHHHHHHHHhCCCC---ceEEEecCC-C-CCCCcc-----cc------C
Confidence 8876532 44 23334445532 23345666 56 888999873 2 333321 21 2
Q ss_pred ccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEE
Q 041829 233 IPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSAL 312 (486)
Q Consensus 233 ~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l 312 (486)
++.+|+++.++|+||.+.|+++|.++ +|+++|+|+||+.+....+ +..+|++++++||+++.|.++|++
T Consensus 165 ~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~--------~~~~di~~~s~sK~~~~~gg~g~l 233 (398)
T 2fyf_A 165 SVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVD--------IAETDAYYFAPQKNFASDGGLWLA 233 (398)
T ss_dssp TCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCC--------GGGCSEEEECTTSTTCSCSSEEEE
T ss_pred CCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccC--------cccCcEEEEecCcccCCCCceEEE
Confidence 35688888999999999999999887 8999999999986543221 224899999999999988678888
Q ss_pred EEeCchHHHHHhc------CCcccccccccccCCccCCCCCccCCCCC-CCcHHHHHHHHHhChhh-HHHHHHHHHHHHH
Q 041829 313 WVKDRNTLIQSLS------TNPEFLKNKASQANMVVDYKDWQIPLGRR-FRSLKLWMVLRLYGLEN-LQGYIRNHIQLAK 384 (486)
Q Consensus 313 ~~r~~~~~~~~~~------~~~~yl~~~~~~~~~~~~~~~~~~~~sr~-~~~l~~~~~l~~~g~~g-~~~~~~~~~~~a~ 384 (486)
+++++ .+..... ..++|+....... ... ..... .+.. ....++..+++.+...| ++++.++..++++
T Consensus 234 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~-~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 308 (398)
T 2fyf_A 234 IMSPA-ALSRIEAIAATGRWVPDFLSLPIAVE--NSL-KNQTY-NTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQ 308 (398)
T ss_dssp EECHH-HHHHHHHHHHTTCCCCGGGCHHHHHH--HHT-TTCCS-SCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred EECHH-HHHHhhcccccCCCCCcEEehHHHhh--hcc-cCCCC-CCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 87653 2322211 0123332110000 000 00000 1111 11234556666655555 8899999999999
Q ss_pred HHHHHHhcCCCeEEec-CC--Cce-EEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCC
Q 041829 385 HFEGLVAQDLRFEVVT-PR--IFS-LVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLT 460 (486)
Q Consensus 385 ~l~~~l~~~~~~~~~~-~~--~~~-~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~ 460 (486)
++.+.|+++|++++.. +| ..+ +++|++.. + .+ ..++.+.|.++|..+..+....+..++|+++ +..+
T Consensus 309 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~-----~~--~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~-~~~~ 379 (398)
T 2fyf_A 309 RLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVD-D-----VD--AGTVAKILRANGIVDTEPYRKLGRNQLRVAM-FPAV 379 (398)
T ss_dssp HHHHHHHHSTTEEESCCSGGGBCSSEEEEEECT-T-----SC--HHHHHHHHHHTTCBCCSCCTTTCSSEEEEEC-CTTS
T ss_pred HHHHHHHHcCCceeccCChhhcCCcEEEEECCC-C-----CC--HHHHHHHHHHCCcEEecCcccCCCCEEEEEe-cCCC
Confidence 9999999998999874 23 345 78888742 1 11 2567788888875433221112346899999 7788
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 041829 461 EWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 461 t~~di~~~~~~l~~~~~~ 478 (486)
|++|+++++++|+++.++
T Consensus 380 t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 380 EPDDVSALTECVDWVVER 397 (398)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999987653
No 108
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.91 E-value=5.1e-23 Score=206.38 Aligned_cols=327 Identities=9% Similarity=0.055 Sum_probs=217.5
Q ss_pred HHHHHHHHHhcCcC----ccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHH
Q 041829 91 GFLGEMLSAGLNIV----GFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALK 166 (486)
Q Consensus 91 ~~~~~~l~~~~n~~----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~ 166 (486)
..+.+.+...+... ...|...++..++++++.+|+.+.+|.+.+ ....++|+|||+++..++.+...
T Consensus 51 ~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~-----~~~i~~~~g~~~al~~~~~~l~~---- 121 (398)
T 3ele_A 51 QIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFN-----ADNLYMTMGAAASLSICFRALTS---- 121 (398)
T ss_dssp HHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCC-----GGGEEEESSHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCC-----hHHEEEccCHHHHHHHHHHHHcC----
Confidence 34444444444332 234545566789999999999999986432 12689999999999888876533
Q ss_pred HhCccCCCC-eEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcc
Q 041829 167 RVGKNSLEK-LVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTS 245 (486)
Q Consensus 167 ~~~~~~~~~-~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~ 245 (486)
++ +.|+++..+|.++...++..|. +++.+|++++ ++.+|+++|++++++. +.+|+++.++|+
T Consensus 122 -------~g~d~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~l~~~------~~~v~~~~p~np 184 (398)
T 3ele_A 122 -------DAYDEFITIAPYFPEYKVFVNAAGA---RLVEVPADTE-HFQIDFDALEERINAH------TRGVIINSPNNP 184 (398)
T ss_dssp -------STTCEEEEESSCCTHHHHHHHHTTC---EEEEECCCTT-TSSCCHHHHHHTCCTT------EEEEEECSSCTT
T ss_pred -------CCCCEEEEeCCCchhhHHHHHHcCC---EEEEEecCCc-CCcCCHHHHHHHhCcC------CCEEEEcCCCCC
Confidence 56 7888999999999999999999 9999999865 4799999999988643 467888899999
Q ss_pred ccccCC---hHHHHHHHHH------hCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccC-CCCcceEEEEe
Q 041829 246 STAVDP---LLALGNIAKS------NGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFL-TNFDCSALWVK 315 (486)
Q Consensus 246 tG~id~---l~~I~~ia~~------~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~-~p~~~g~l~~r 315 (486)
||.+-| +++|+++|++ +|+++++|++|+.+........ ........+.++.+++|+++ ....+|+++.+
T Consensus 185 tG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 263 (398)
T 3ele_A 185 SGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVP-FVTKYYDNTLVCYSYSKSLSLPGERIGYVLVP 263 (398)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCC-CGGGTCSSEEEEEESTTTSSCTTTCCEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcC-ChHhhcCCeEEEEehhhcCCCccceeEEEEEc
Confidence 999977 7777899999 9999999999987543211111 11112244577889999997 44668998887
Q ss_pred CchH----HHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHh
Q 041829 316 DRNT----LIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVA 391 (486)
Q Consensus 316 ~~~~----~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~ 391 (486)
+... +...+....... .......+..+++...+.... ..++..++++++.+.|+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~l~~~L~ 321 (398)
T 3ele_A 264 DEVYDKAELYAAVCGAGRAL-------------------GYVCAPSLFQKMIVKCQGATG---DINAYKENRDLLYEGLT 321 (398)
T ss_dssp TTSTTHHHHHHHHHHHHHHT-------------------TCCCSCHHHHHHHTTCTTCCC---CHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHhhhc-------------------cccCCCHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHH
Confidence 6521 111110000000 000011223333322222111 34566778888899998
Q ss_pred cCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHH
Q 041829 392 QDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEV 471 (486)
Q Consensus 392 ~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~ 471 (486)
++ ++++..+.....+.+.+... + ..++.+.|.+.|..+..+..+....++|+++ + +++++|++++++
T Consensus 322 ~~-g~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~-~--~~~e~i~~~l~~ 388 (398)
T 3ele_A 322 RI-GYHCFKPDGAFYMFVKALED-------D--SNAFCEKAKEEDVLIVAADGFGCPGWVRISY-C--VDREMIKHSMPA 388 (398)
T ss_dssp HH-TCCEECCSBSSEEEEECSSS-------C--HHHHHHHHHTTTEECEESGGGTCTTEEEEEC-C--SCHHHHHHHHHH
T ss_pred Hc-CCeecCCCeeEEEEEEcCCC-------C--HHHHHHHHHHCCEEEeCccccCCCCeEEEEe-c--CCHHHHHHHHHH
Confidence 87 78776443333355565321 1 2467777777774433333343346899998 4 699999999999
Q ss_pred HHHHHHHH
Q 041829 472 MQDKASAL 479 (486)
Q Consensus 472 l~~~~~~l 479 (486)
|.++.+++
T Consensus 389 l~~~l~~~ 396 (398)
T 3ele_A 389 FEKIYKKY 396 (398)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987764
No 109
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.91 E-value=6.3e-23 Score=203.71 Aligned_cols=314 Identities=12% Similarity=0.081 Sum_probs=214.6
Q ss_pred HHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhC
Q 041829 90 AGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVG 169 (486)
Q Consensus 90 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 169 (486)
+..+.+.+...+......|...++..++++++.+|+.+.+|.+.+ ....++|+|||+++..++.+...
T Consensus 44 ~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~-----~~~v~~~~g~~~a~~~~~~~~~~------- 111 (370)
T 2z61_A 44 PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADII-----PDNIIITGGSSLGLFFALSSIID------- 111 (370)
T ss_dssp CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCC-----GGGEEEESSHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCC-----hhhEEECCChHHHHHHHHHHhcC-------
Confidence 344455555544433334554556789999999999988885432 12589999999999888876532
Q ss_pred ccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 170 KNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 170 ~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++.|+++..+|.++...++..|. +++.+| +|+++|++++++ .+.+|+++.++|++|.+
T Consensus 112 ----~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~--------~d~~~l~~~l~~------~~~~v~~~~p~nptG~~ 170 (370)
T 2z61_A 112 ----DGDEVLIQNPCYPCYKNFIRFLGA---KPVFCD--------FTVESLEEALSD------KTKAIIINSPSNPLGEV 170 (370)
T ss_dssp ----TTCEEEEESSCCTHHHHHHHHTTC---EEEEEC--------SSHHHHHHHCCS------SEEEEEEESSCTTTCCC
T ss_pred ----CCCEEEEeCCCchhHHHHHHHcCC---EEEEeC--------CCHHHHHHhccc------CceEEEEcCCCCCcCcc
Confidence 567888999999999999999999 888877 689999988854 24578888999999999
Q ss_pred CChHHHHHHHHHhCCEEEeeccccchhccCccchhcc--cCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcC
Q 041829 250 DPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYI--DGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLST 326 (486)
Q Consensus 250 d~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~--~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~ 326 (486)
.|++ |.++|+++|+++++|++|+.+.... ...... .+....|.++.++||+++.| ..+|+++.++ +.. +.+..
T Consensus 171 ~~~~-l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~-~~~~~ 246 (370)
T 2z61_A 171 IDRE-IYEFAYENIPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISND-EII-EAILK 246 (370)
T ss_dssp CCHH-HHHHHHHHCSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCH-HHH-HHHHH
T ss_pred cCHH-HHHHHHHcCCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECH-HHH-HHHHH
Confidence 9999 9999999999999999998754321 111111 11235688899999999644 2378887765 322 22211
Q ss_pred -CcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh---ChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Q 041829 327 -NPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY---GLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPR 402 (486)
Q Consensus 327 -~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~ 402 (486)
...+. .....+..+++...+ +.+.++++.++..++++++.+.|+++ ++++.. +
T Consensus 247 ~~~~~~---------------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~ 303 (370)
T 2z61_A 247 LQQNLF---------------------ISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEVNN-P 303 (370)
T ss_dssp HHHHHT---------------------SSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCC-C
T ss_pred HHhhcc---------------------cCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecC-C
Confidence 00000 011223333443333 35667788888999999999999988 887654 3
Q ss_pred CceEE-EEEecCCCCCcccchHHHHHHHHHHH-ccCcEEEEee-eEC--CEeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041829 403 IFSLV-CFRLLPPHNDEDHGNKLNHKLLDDIN-STGKIFISHT-VLS--GKYILRFAVGAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 403 ~~~~v-~f~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~-~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 477 (486)
..+++ .+.+.. ...++.+.|. +.| +.+.+. .+. +..++|+++ . ++++++++++++|.++.+
T Consensus 304 ~~~~~~~~~~~~----------~~~~~~~~l~~~~g-i~v~~g~~f~~~~~~~~Ri~~-~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 304 IGAYYVFPNIGE----------DGREFAYKLLKEKF-VALTPGIGFGSKGKNYIRISY-A--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp CBTTEECCBCSS----------CHHHHHHHHHHHHC-EECEEGGGGCGGGSSBEEEEC-C--SCHHHHHHHHHHHHHHHC
T ss_pred CcceEEEEecCC----------CHHHHHHHHHHhCC-EEEeCchhhCCCCCCEEEEEE-e--CCHHHHHHHHHHHHHHHh
Confidence 33433 334421 1245677776 567 444443 222 346899999 4 689999999999987753
No 110
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.90 E-value=4e-22 Score=200.95 Aligned_cols=300 Identities=14% Similarity=0.116 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHH---
Q 041829 117 LEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQ--- 193 (486)
Q Consensus 117 le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~--- 193 (486)
...++.+++++++|.+. .++|+|||+|+..++.++.. +++.|+++...|.++...+.
T Consensus 57 ~~~~l~~~la~~~g~~~---------~~~~~~gt~a~~~al~~l~~-----------~gd~vi~~~~~~~~~~~~~~~~~ 116 (412)
T 2cb1_A 57 TAKALEERLKALEGALE---------AVVLASGQAATFAALLALLR-----------PGDEVVAAKGLFGQTIGLFGQVL 116 (412)
T ss_dssp HHHHHHHHHHHHHTCSE---------EEEESSHHHHHHHHHHTTCC-----------TTCEEEEETTCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCc---------EEEECCHHHHHHHHHHHHhC-----------CCCEEEEeCCCchhHHHHHHHHH
Confidence 34444555899998753 79999999999998876522 56788889999998777644
Q ss_pred -HhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccc
Q 041829 194 -IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAY 272 (486)
Q Consensus 194 -~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~ 272 (486)
..|+ +++.+|. |+++|+++++++ +.+|+++.++|++|.+.|+++|+++|+++|+++|+|++|
T Consensus 117 ~~~g~---~~~~~~~--------~~~~l~~~i~~~------~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~ 179 (412)
T 2cb1_A 117 SLMGV---TVRYVDP--------EPEAVREALSAK------TRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTF 179 (412)
T ss_dssp TTTTC---EEEEECS--------SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGG
T ss_pred HHcCC---EEEEECC--------CHHHHHHHhccC------CeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCC
Confidence 3577 7887764 388888888643 468889999999999999999999999999999999999
Q ss_pred cchhccCccchhcccCCcCCCceeeecccccCCCCc-ceEEEEeCchH-HHHHhcCCcccccccc----cccCCc-cCCC
Q 041829 273 AGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFD-CSALWVKDRNT-LIQSLSTNPEFLKNKA----SQANMV-VDYK 345 (486)
Q Consensus 273 g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~-~g~l~~r~~~~-~~~~~~~~~~yl~~~~----~~~~~~-~~~~ 345 (486)
+.+........ .++|+++.++||++++|.+ .|.+++.++.. +.+.....++...... ...... ....
T Consensus 180 ~~~~~~~~~~~------~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r 253 (412)
T 2cb1_A 180 GAAGALCRPLA------WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVR 253 (412)
T ss_dssp GTTTTSCCGGG------GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHH
T ss_pred ccccccCCccc------cCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHH
Confidence 87622111111 2689999999999998876 77777665321 1000000010000000 000000 0000
Q ss_pred CCc-cCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----------------CceEE
Q 041829 346 DWQ-IPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPR-----------------IFSLV 407 (486)
Q Consensus 346 ~~~-~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~-----------------~~~~v 407 (486)
.+. ...+....+...|..+.. .+.+.+++++..++++++.+.|.+.|+++++..| ..+++
T Consensus 254 ~~~~~~~g~~~~~~~a~~~~~~--l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv 331 (412)
T 2cb1_A 254 TLGLSLCGMALSPFNAYLLFQG--LETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPIL 331 (412)
T ss_dssp HHHTTTTCCCCCHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEE
T ss_pred HHHHHhcCCCCChHHhHHHHcC--CchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEE
Confidence 001 011223345566666653 4566778888889999999999999999855222 34588
Q ss_pred EEEecCCCCCcccchHHHHHHHHHHHccCcEEEEee--------eE----------------CC--EeEEEEEecCCCCC
Q 041829 408 CFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHT--------VL----------------SG--KYILRFAVGAPLTE 461 (486)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--------~~----------------~~--~~~lRi~~~~~~~t 461 (486)
+|.+ . + . ..+...+.+.|... .+. .. .| .+.+|+++ +..++
T Consensus 332 ~~~~-~-~------~---~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~-g~~~~ 398 (412)
T 2cb1_A 332 TLDL-G-D------L---ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSV-GLEDP 398 (412)
T ss_dssp EEEC-S-S------H---HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEEC-CSSCH
T ss_pred EEEe-C-C------H---HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEe-ccCCH
Confidence 8888 4 2 1 23334444456443 321 00 01 36899999 88999
Q ss_pred HHHHHHHHHHHHH
Q 041829 462 WRHVNAAWEVMQD 474 (486)
Q Consensus 462 ~~di~~~~~~l~~ 474 (486)
+++|+.+.++|++
T Consensus 399 ~~~i~~l~~al~~ 411 (412)
T 2cb1_A 399 LDLLALFEEALEA 411 (412)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999864
No 111
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.90 E-value=1.4e-22 Score=204.25 Aligned_cols=332 Identities=11% Similarity=0.057 Sum_probs=218.2
Q ss_pred HHHHHHHHHHhcCcC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCC-CCeEEcCchhHHHHHHHHHHHHHHHHH
Q 041829 90 AGFLGEMLSAGLNIV-GFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQ-GGGVIQGTASEAVLVVLLAARDKALKR 167 (486)
Q Consensus 90 ~~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~-~~~~~t~ggt~a~~~al~~a~~~~~~~ 167 (486)
+..+.+.+...+... ...|...++..++++.+.+|+.+.+|.+.+ . ...++|+|||+++..++.+...
T Consensus 52 ~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~-----~~~~v~~t~g~~~a~~~~~~~~~~----- 121 (412)
T 2x5d_A 52 PPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQID-----PESEAIVTIGSKEGLAHLMLATLD----- 121 (412)
T ss_dssp CHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCC-----TTTSEEEESCHHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-----CCcCEEEcCChHHHHHHHHHHhCC-----
Confidence 344556666655443 234544566789999999999888886321 0 1589999999999888876532
Q ss_pred hCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccc
Q 041829 168 VGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSST 247 (486)
Q Consensus 168 ~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG 247 (486)
+++.|+++..+|.++...++..|. +++.+|.++++++.+|+++|++++++. +.+|+++.++|+||
T Consensus 122 ------~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~l~~p~nptG 186 (412)
T 2x5d_A 122 ------HGDTILVPNPSYPIHIYGAVIAGA---QVRSVPLVPGIDFFNELERAIRESIPK------PRMMILGFPSNPTA 186 (412)
T ss_dssp ------TTCEEEEEESCCHHHHHHHHHHTC---EEEEEECSTTSCHHHHHHHHHHTEESC------CSEEEEESSCTTTC
T ss_pred ------CCCEEEEcCCCchhHHHHHHHcCC---EEEEeecCCccCCCCCHHHHHHhcccC------ceEEEECCCCCCCC
Confidence 567888899999999999999999 999999986534668999999887532 44677788999999
Q ss_pred ccCC---hHHHHHHHHHhCCEEEeeccccchhccCccchhc--ccCCcCCCceeeecccccCCC-CcceEEEEeCchHHH
Q 041829 248 AVDP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQY--IDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLI 321 (486)
Q Consensus 248 ~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~--~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~ 321 (486)
.+-| +++|+++|++||+++++|++|+.+.......... +.+....|.++.++||+++.| ..+|+++.++ ..+.
T Consensus 187 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~ 265 (412)
T 2x5d_A 187 QCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNP-ELVS 265 (412)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEECH-HHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcCH-HHHH
Confidence 9965 6899999999999999999998765321111111 111135678899999999744 3578888743 3222
Q ss_pred HHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--ChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Q 041829 322 QSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--GLENLQGYIRNHIQLAKHFEGLVAQDLRFEVV 399 (486)
Q Consensus 322 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~ 399 (486)
.+.....+.. . ....+..+++...+ +.+.++++.++..++++++.+.|+++ ++++.
T Consensus 266 -~l~~~~~~~~------------------~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 323 (412)
T 2x5d_A 266 -ALARIKSYHD------------------Y--GTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA-GWMVE 323 (412)
T ss_dssp -HHHHHHHHHC------------------C--CCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH-TCCCC
T ss_pred -HHHHHHhhhc------------------c--CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEec
Confidence 2211100000 0 01222333333322 45678888889999999999999987 77765
Q ss_pred cCCCce-EEEEEecCCCCCcccchHHHHHHHHHHHc-cCcEEEEee-eEC--CEeEEEEEecCCCCCHHHHHHHHHHHHH
Q 041829 400 TPRIFS-LVCFRLLPPHNDEDHGNKLNHKLLDDINS-TGKIFISHT-VLS--GKYILRFAVGAPLTEWRHVNAAWEVMQD 474 (486)
Q Consensus 400 ~~~~~~-~v~f~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~-~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~ 474 (486)
++..+ ++.+++.. .. ......++.+.|.+ .| +.+.+. .+. +..++|+++ .. ++++++++++.|.+
T Consensus 324 -~~~~g~~~~~~~~~-~~----~~~~~~~~~~~l~~~~g-i~v~~g~~f~~~~~~~iRis~-~~--~~~~l~~~l~~l~~ 393 (412)
T 2x5d_A 324 -NPKASMYVWAKIPE-PY----AHLGSLEFAKKLLQDAK-VSVSPGIGFGDYGDDHVRFAL-IE--NRDRLRQAVRGIKA 393 (412)
T ss_dssp -CCSBSSEEEEECCT-TT----GGGCHHHHHHHHHHHHC-EECEEGGGGCGGGTTEEEEEC-CS--CHHHHHHHHHHHHH
T ss_pred -CCCeeeEEEEEcCC-cc----CCCCHHHHHHHHHHHCC-EEEeCchhhCCCCCCeEEEEe-cC--CHHHHHHHHHHHHH
Confidence 44444 45556532 10 00012467777765 47 444433 222 246899999 43 79999999999999
Q ss_pred HHHHH
Q 041829 475 KASAL 479 (486)
Q Consensus 475 ~~~~l 479 (486)
+.+++
T Consensus 394 ~l~~~ 398 (412)
T 2x5d_A 394 MFRAD 398 (412)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 88764
No 112
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.90 E-value=2.8e-22 Score=200.91 Aligned_cols=314 Identities=15% Similarity=0.071 Sum_probs=205.9
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHH
Q 041829 111 SPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQK 190 (486)
Q Consensus 111 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 190 (486)
++...+++++ +++++|.+ ..++++|||+|+..++.+.+.. +++.|+++..+|.++..
T Consensus 31 g~~~~~l~~~----la~~~~~~---------~v~~~~ggt~al~~~~~~l~~~----------~gd~Vl~~~~~~~~~~~ 87 (394)
T 1o69_A 31 GEFVNRFEQS----VKDYSKSE---------NALALNSATAALHLALRVAGVK----------QDDIVLASSFTFIASVA 87 (394)
T ss_dssp THHHHHHHHH----HHHHHCCS---------EEEEESCHHHHHHHHHHHTTCC----------TTCEEEEESSSCGGGTH
T ss_pred ChHHHHHHHH----HHHHhCCC---------cEEEeCCHHHHHHHHHHHcCCC----------CCCEEEECCCccHHHHH
Confidence 4556677766 77777763 3899999999999888765211 56789999999999999
Q ss_pred HHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeec
Q 041829 191 ACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDA 270 (486)
Q Consensus 191 a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~ 270 (486)
+++..|+ +++.+|++. +|.+|+++|++++++.. ..+.+|+++. ++|...|+++|.++|+++|+++|+|+
T Consensus 88 ~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~~~~---~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~De 156 (394)
T 1o69_A 88 PICYLKA---KPVFIDCDE--TYNIDVDLLKLAIKECE---KKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDA 156 (394)
T ss_dssp HHHHTTC---EEEEECBCT--TSSBCHHHHHHHHHHCS---SCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHcCC---EEEEEEeCC--CCCcCHHHHHHHHhccc---CCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEEC
Confidence 9999999 999999883 47999999999997521 1134566654 78999999999999999999999999
Q ss_pred cccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccC
Q 041829 271 AYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIP 350 (486)
Q Consensus 271 A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 350 (486)
||+.+..+.... ...+..+|.++++.||+++ |.++|+++++++..+.........+..... .+. ..+
T Consensus 157 a~~~g~~~~~~~---~~~~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~----~~~ 223 (394)
T 1o69_A 157 AEALGSFYKNKA---LGTFGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENCL-----HYE----HLD 223 (394)
T ss_dssp TTCTTCEETTEE---TTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSSS-----SCC----CSS
T ss_pred cCcccceeCCcc---cccccCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccCc-----ccc----ccc
Confidence 998433322211 1112357899999999776 567999998765544332221111110000 000 011
Q ss_pred CCCCCCc--HHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----CceEEEEEecCCC--------
Q 041829 351 LGRRFRS--LKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPR-----IFSLVCFRLLPPH-------- 415 (486)
Q Consensus 351 ~sr~~~~--l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~-----~~~~v~f~~~~~~-------- 415 (486)
.+.+++. +...+++.. .+.+++.+++..++++++.+.|+++ +++..++ .+.++++.+.+..
T Consensus 224 ~g~~~~~~~~~aa~~l~~--l~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 299 (394)
T 1o69_A 224 YGYNYRLSNVLGAIGVAQ--MEVLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQK 299 (394)
T ss_dssp CCCBCBCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCE
T ss_pred cCcccCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhccccccc
Confidence 2222222 333333332 3567888899999999999999887 6665432 2235777775210
Q ss_pred -----CCcccchHHHHHHHHHHHccCcEEEEee--------eECC----E---------eEEEEEecCCCCCHHHHHHHH
Q 041829 416 -----NDEDHGNKLNHKLLDDINSTGKIFISHT--------VLSG----K---------YILRFAVGAPLTEWRHVNAAW 469 (486)
Q Consensus 416 -----~~~~~~~~~~~~l~~~l~~~g~~~~~~~--------~~~~----~---------~~lRi~~~~~~~t~~di~~~~ 469 (486)
...........++.+.|.+.|.. +.+. .+.. . ..+|+.. ++.+|++|+++++
T Consensus 300 ~~~~~~~~~~~~~~~~~l~~~L~~~gI~-v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~edi~~~~ 377 (394)
T 1o69_A 300 DINISQKNITLHPKISKLIEDLKNKQIE-TRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPS-GTAMSKDDVYEIS 377 (394)
T ss_dssp EEECCCCCCCCCHHHHHHHHHHHHTTCC-CBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECC-CTTCCHHHHHHHH
T ss_pred cccccccccccccCHHHHHHHHHHcCCc-ccccCCccccchhhhccCCCCChHHHHHhcCeEEccC-CCCCCHHHHHHHH
Confidence 00000011245678888877743 3322 0111 0 3566666 8899999999999
Q ss_pred HHHHHHHH
Q 041829 470 EVMQDKAS 477 (486)
Q Consensus 470 ~~l~~~~~ 477 (486)
++|+++.+
T Consensus 378 ~~l~~~~~ 385 (394)
T 1o69_A 378 KLILKSIK 385 (394)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99988754
No 113
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.90 E-value=2.9e-22 Score=199.24 Aligned_cols=321 Identities=8% Similarity=-0.018 Sum_probs=215.4
Q ss_pred HHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCcc
Q 041829 92 FLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKN 171 (486)
Q Consensus 92 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 171 (486)
.+.+.+...+......|.. .. .++++++.+++.+.+|.+.. ....++|+|||+++..++.+...
T Consensus 40 ~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~-----~~~i~~t~g~~~a~~~~~~~~~~--------- 103 (377)
T 3fdb_A 40 AVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQAR-----PEWIFPIPDVVRGLYIAIDHFTP--------- 103 (377)
T ss_dssp HHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCC-----GGGEEEESCHHHHHHHHHHHHSC---------
T ss_pred HHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCC-----HHHEEEeCChHHHHHHHHHHhcC---------
Confidence 3444454444433334443 34 78999999999988886432 12689999999999888776533
Q ss_pred CCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC
Q 041829 172 SLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP 251 (486)
Q Consensus 172 ~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~ 251 (486)
+++.|+++..+|.++...++..|. +++.+|.+++ +|+++|++++++. +.+|+++.++|++|.+-|
T Consensus 104 --~gd~vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~----~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~ 168 (377)
T 3fdb_A 104 --AQSKVIVPTPAYPPFFHLLSATQR---EGIFIDATGG----INLHDVEKGFQAG------ARSILLCNPYNPLGMVFA 168 (377)
T ss_dssp --TTCCEEEEESCCTHHHHHHHHHTC---CEEEEECTTS----CCHHHHHHHHHTT------CCEEEEESSBTTTTBCCC
T ss_pred --CCCEEEEcCCCcHhHHHHHHHcCC---EEEEccCCCC----CCHHHHHHHhccC------CCEEEEeCCCCCCCCCCC
Confidence 566788899999999999999999 9999998853 9999999999764 347888899999999965
Q ss_pred ---hHHHHHHHHHhCCEEEeeccccchhccC-ccchhcccCC--cCCCceeeecccccCCC-CcceEEEEeCchHHHHHh
Q 041829 252 ---LLALGNIAKSNGMWFHVDAAYAGSACIC-PEYRQYIDGV--EEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSL 324 (486)
Q Consensus 252 ---l~~I~~ia~~~g~~lhvD~A~g~~~~~~-~~~~~~~~~~--~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~ 324 (486)
+++|+++|++||+++++|++|+.+.... ..... +..+ ...+.+..+++|+++.| ..+|++++.++..... +
T Consensus 169 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~-~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~-~ 246 (377)
T 3fdb_A 169 PEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAA-GVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEH-W 246 (377)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGG-GSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHH-H
T ss_pred HHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCccc-HHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHH-H
Confidence 6777788999999999999998754322 11111 1111 12346678899999644 4578777766554332 2
Q ss_pred cCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHH--hChhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEecC
Q 041829 325 STNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRL--YGLENLQGYIRNHIQLAKHFEGLVAQ-DLRFEVVTP 401 (486)
Q Consensus 325 ~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~--~g~~g~~~~~~~~~~~a~~l~~~l~~-~~~~~~~~~ 401 (486)
.....+.. . ....+..+++... .+.+.++++.++..++++++.+.|++ +|++++..
T Consensus 247 ~~~~~~~~------------------~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~- 305 (377)
T 3fdb_A 247 QQLSPVIK------------------D--GASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITP- 305 (377)
T ss_dssp HHSCHHHH------------------C--CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECC-
T ss_pred HHHHHhhc------------------C--CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEec-
Confidence 21111100 0 1122233332222 24566788889999999999999998 89999874
Q ss_pred CCceEE-EEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEee-eEC--CEeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q 041829 402 RIFSLV-CFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHT-VLS--GKYILRFAVGAPLTEWRHVNAAWEVMQDKA 476 (486)
Q Consensus 402 ~~~~~v-~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~~ 476 (486)
+..+.+ .+.+...+. + .++...+.++ | +.+.+. .+. +..++|+++ . ++++++++++++|+++.
T Consensus 306 ~~~~~~~~~~~~~~~~-----~---~~~~~~l~~~~g-i~v~~g~~~~~~~~~~~Ris~-~--~~~e~i~~~l~~l~~~l 373 (377)
T 3fdb_A 306 MQATYLMWIDFRDTTI-----E---GSPSEFFIEKAK-VAMNDGAWFGEDGTGFCRLNF-A--TSREVLEEAIDRMAKAV 373 (377)
T ss_dssp CSBCSEEEEECTTSCC-----C---SCHHHHHHHHHC-EECEEGGGGCGGGTTEEEEEC-C--SCHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEEECcccCC-----C---HHHHHHHHHhCC-EEecCChhccCCCCCEEEEEe-C--CCHHHHHHHHHHHHHHH
Confidence 444444 456543211 1 2345555555 6 555443 222 246899998 3 48999999999998876
Q ss_pred HH
Q 041829 477 SA 478 (486)
Q Consensus 477 ~~ 478 (486)
++
T Consensus 374 ~~ 375 (377)
T 3fdb_A 374 SH 375 (377)
T ss_dssp TT
T ss_pred hh
Confidence 53
No 114
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.90 E-value=9.6e-23 Score=204.79 Aligned_cols=330 Identities=12% Similarity=0.087 Sum_probs=213.5
Q ss_pred HHHHHHHHHHhcC-cCcc------ccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHH
Q 041829 90 AGFLGEMLSAGLN-IVGF------SWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARD 162 (486)
Q Consensus 90 ~~~~~~~l~~~~n-~~~~------~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~ 162 (486)
+..+.+.+...+. .... .+...+...++|+.+++++++++|.+.. .+++++||+++..++.++..
T Consensus 36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~--------~i~~~sGt~a~~~a~~~~~~ 107 (405)
T 2vi8_A 36 SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA--------NVQPHSGAQANMAVYFTVLE 107 (405)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCce--------EEEecCcHHHHHHHHHHhcC
Confidence 4455555555553 2211 1223466788998899999999998753 45556669999988877633
Q ss_pred HHHHHhCccCCCCeEEEecCCCchhHHH-H--HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEE
Q 041829 163 KALKRVGKNSLEKLVVYASDQTHSALQK-A--CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCA 239 (486)
Q Consensus 163 ~~~~~~~~~~~~~~~v~~s~~~H~s~~~-a--~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~ 239 (486)
+++.|+++...|.++.. . +...|.+. +++.++++++ ++.+|+++|++++++.. +.+|++
T Consensus 108 -----------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~-~~~~d~~~l~~~i~~~~-----~~~v~~ 169 (405)
T 2vi8_A 108 -----------HGDTVLGMNLSHGGHLTHGSPVNFSGVQY-NFVAYGVDPE-THVIDYDDVREKARLHR-----PKLIVA 169 (405)
T ss_dssp -----------TTCEEEEECGGGTCCTTTTCTTSHHHHHS-EEEEECBCTT-TCSBCHHHHHHHHHHHC-----CSEEEE
T ss_pred -----------CCCEEEEecccccchhcccchhhhcccee-EEEecccccc-cCCcCHHHHHHHHHhcC-----CeEEEE
Confidence 56778888888977643 1 12223211 5667776533 47899999999997631 234554
Q ss_pred ecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchH
Q 041829 240 TVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNT 319 (486)
Q Consensus 240 ~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~ 319 (486)
+ + +..|...|+++|.++|+++|+++|+|++|+.+....+... ..+...|+++.++||++++|.| |+++.+ ++.
T Consensus 170 ~-~-~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~---~~~~~~di~~~s~sK~~~g~~g-G~~~~~-~~~ 242 (405)
T 2vi8_A 170 A-A-AAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHP---NPVPYAHFVTTTTHKTLRGPRG-GMILCQ-EQF 242 (405)
T ss_dssp C-C-SSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC---CSTTTCSEEEEESSSTTCCCSC-EEEEEC-HHH
T ss_pred e-C-CCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCC---CccccCCEEEEeccccCCCCCC-eEEEEc-HHH
Confidence 2 2 4457778999999999999999999999985433222111 1233689999999999987877 888876 333
Q ss_pred HHHHhcCC-cccccccccccCCccCCCCCccCCCCCC-CcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 041829 320 LIQSLSTN-PEFLKNKASQANMVVDYKDWQIPLGRRF-RSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFE 397 (486)
Q Consensus 320 ~~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~~~sr~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~ 397 (486)
.. .+... ..+. .++... ....+.++++....++++++.++..++++++.+.|+++ +++
T Consensus 243 ~~-~l~~~~~~~~------------------~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 302 (405)
T 2vi8_A 243 AK-QIDKAIFPGI------------------QGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFT 302 (405)
T ss_dssp HH-HHHHHHTTTT------------------CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred HH-HHHhhhcccc------------------cCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence 22 22110 0110 011111 11233445555444688899999999999999999998 898
Q ss_pred EecC-CCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeee-------ECCEeEEEEEecC---CCCCHHHHH
Q 041829 398 VVTP-RIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTV-------LSGKYILRFAVGA---PLTEWRHVN 466 (486)
Q Consensus 398 ~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-------~~~~~~lRi~~~~---~~~t~~di~ 466 (486)
+..+ ...+++.+.+...+ .+ ...+.+.|.+.| +.+.+.. ..+..++|+++.. +..+++|++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~l~~~g-i~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~ 374 (405)
T 2vi8_A 303 LVSGGTDNHLLLVDLRPQQ-----LT--GKTAEKVLDEVG-ITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMD 374 (405)
T ss_dssp EGGGSCSSSEEEEECGGGT-----CC--HHHHHHHHHHHT-EECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHH
T ss_pred EecCCCCceEEEEEccCCC-----CC--HHHHHHHHHHcC-ceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHH
Confidence 8754 34667777775311 11 245666776677 4444432 1123579999832 146899999
Q ss_pred HHHHHHHHHHHHHH
Q 041829 467 AAWEVMQDKASALL 480 (486)
Q Consensus 467 ~~~~~l~~~~~~l~ 480 (486)
+++++|+++.+++.
T Consensus 375 ~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 375 EIAAIIGLVLKNVG 388 (405)
T ss_dssp HHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhccc
Confidence 99999999876543
No 115
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.90 E-value=3.7e-22 Score=201.25 Aligned_cols=310 Identities=13% Similarity=0.063 Sum_probs=196.6
Q ss_pred ccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhH
Q 041829 109 ITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSAL 188 (486)
Q Consensus 109 ~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~ 188 (486)
...+...++|+.+.+++++++|.+.+ -+++++||+|+..++.+... +++.|+++..+|.++
T Consensus 64 ~~~~~~~~~~~~~~~~la~~~g~~~~--------~i~~~sGt~a~~~~~~~~~~-----------~gd~vl~~~~~~~~~ 124 (417)
T 3n0l_A 64 GGCEFVDEIETLAIERCKKLFNCKFA--------NVQPNSGSQANQGVYAALIN-----------PGDKILGMDLSHGGH 124 (417)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHHHHHHHHHHSC-----------TTCEEEEECC-----
T ss_pred ccchHHHHHHHHHHHHHHHHhCCCCc--------ceEeccHHHHHHHHHHHhcC-----------CCCEEEecccccccc
Confidence 34466778999999999999998763 34555669999888876533 677888999999876
Q ss_pred HH---HHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCE
Q 041829 189 QK---ACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMW 265 (486)
Q Consensus 189 ~~---a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~ 265 (486)
.. .+...|.+. .++.++++ .++.+|+++|++++++.. +.+|+++.++ +|.+.|+++|.++|++||++
T Consensus 125 ~~~~~~~~~~g~~~-~~~~~~~~--~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~--~G~~~~l~~i~~l~~~~~~~ 194 (417)
T 3n0l_A 125 LTHGAKVSSSGKMY-ESCFYGVE--LDGRIDYEKVREIAKKEK-----PKLIVCGASA--YARVIDFAKFREIADEIGAY 194 (417)
T ss_dssp -----------CCS-EEEEECCC--TTSSCCHHHHHHHHHHHC-----CSEEEECCSS--CCSCCCHHHHHHHHHHHTCE
T ss_pred cchhhhhhhhccee-eeEeccCC--CCCCcCHHHHHHHHHhcC-----CeEEEECCcc--cCccCCHHHHHHHHHHcCCE
Confidence 55 334445411 34555555 357899999999997431 3467766655 39999999999999999999
Q ss_pred EEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCC
Q 041829 266 FHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYK 345 (486)
Q Consensus 266 lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~ 345 (486)
+|+|++|+.+.......... +..+|++++++||++.+|. +|+++.+++............+.
T Consensus 195 li~Dea~~~g~~~~~~~~~~---~~~~di~~~s~sK~l~g~~-~G~~~~~~~~~~~~~~~~~~~~~-------------- 256 (417)
T 3n0l_A 195 LFADIAHIAGLVVAGEHPSP---FPYAHVVSSTTHKTLRGPR-GGIIMTNDEELAKKINSAIFPGI-------------- 256 (417)
T ss_dssp EEEECTTTHHHHHTTSSCCC---TTTCSEEEEESSTTTCSCS-CEEEEESCHHHHHHHHHHHTTTT--------------
T ss_pred EEEECccchhhhhcccCCCc---cccceEEEeeCccccCCCC-eeEEEECCHHHHHHHhhhhCCcc--------------
Confidence 99999976554432221111 2257999999999997776 48887775543322111000000
Q ss_pred CCccCCCCC-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCceEEEEEecCCCCCcccchH
Q 041829 346 DWQIPLGRR-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTP-RIFSLVCFRLLPPHNDEDHGNK 423 (486)
Q Consensus 346 ~~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~~ 423 (486)
.++.. ....++.+++.....++++++.++..++++++.+.|++ .++++... ...+++.+.+.+.+. +
T Consensus 257 ----~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~-----~- 325 (417)
T 3n0l_A 257 ----QGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD-RKFKLVSDGTDNHLVLMSFLDREF-----S- 325 (417)
T ss_dssp ----CSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECTTSSS-----C-
T ss_pred ----cCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-CCceeccCCCCceEEEEEcccCCC-----C-
Confidence 01111 11224445555555577889999999999999999998 58988652 344566666643221 1
Q ss_pred HHHHHHHHHHccCcEEEEeeeE-------CCEeEEEEEecC---CCCCHHHHHHHHHHHHHHHHH
Q 041829 424 LNHKLLDDINSTGKIFISHTVL-------SGKYILRFAVGA---PLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 424 ~~~~l~~~l~~~g~~~~~~~~~-------~~~~~lRi~~~~---~~~t~~di~~~~~~l~~~~~~ 478 (486)
...+.+.|.+.| +.+.+... .....+|+++.. ...+++||+++++.|.++.++
T Consensus 326 -~~~~~~~l~~~g-i~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 326 -GKDADLALGNAG-ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp -HHHHHHHHHHTT-EECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHcC-eEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 134556666667 44443211 122469998621 235789999999999988754
No 116
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.90 E-value=1.1e-21 Score=202.08 Aligned_cols=335 Identities=12% Similarity=0.080 Sum_probs=216.1
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcC-CCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCC-CCeEEEecC
Q 041829 105 GFSWITSPAATELEMIVLDWLAKLLK-LPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSL-EKLVVYASD 182 (486)
Q Consensus 105 ~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~-~~~~v~~s~ 182 (486)
...|..+.+..++++++.+++.+..| .+.+ ....++|+|+++++..++.+..+ .|. +++.|+++.
T Consensus 122 ~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~-----~~~i~~t~G~~~ai~~~~~~l~~--------~gd~~~d~Vlv~~ 188 (498)
T 3ihj_A 122 LGSYSASQGVNCIREDVAAYITRRDGGVPAD-----PDNIYLTTGASDGISTILKILVS--------GGGKSRTGVMIPI 188 (498)
T ss_dssp ------CCSCHHHHHHHHHHHHHHTTTCCCC-----GGGEEEESSHHHHHHHHHHHHCC--------CCGGGSEEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcCCCCCC-----cccEEEcCCHHHHHHHHHHHHcC--------CCCCCCCEEEEeC
Confidence 34677777888999999999999985 6422 12689999999998887765432 110 135899999
Q ss_pred CCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc---CChHHHHHHH
Q 041829 183 QTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV---DPLLALGNIA 259 (486)
Q Consensus 183 ~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i---d~l~~I~~ia 259 (486)
..|.++..+++.+|. +++.++++++++|.+|+++|++++++... +.++.+|+++.++|+||.+ +++++|+++|
T Consensus 189 p~y~~~~~~~~~~g~---~~v~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la 264 (498)
T 3ihj_A 189 PQYPLYSAVISELDA---IQVNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFA 264 (498)
T ss_dssp SCCTHHHHHHHHTTC---EEEEEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred CCchhHHHHHHHcCC---EEEEeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHHHHHHHH
Confidence 999999999999999 99999998776789999999999987532 2246788888999999999 5578899999
Q ss_pred HHhCCEEEeeccccchhccCc----cchhcccCC-----cCCCc-eeeecccccC--CCCcceEEEE--eCchHHHHHhc
Q 041829 260 KSNGMWFHVDAAYAGSACICP----EYRQYIDGV-----EEADS-FNMNAHKWFL--TNFDCSALWV--KDRNTLIQSLS 325 (486)
Q Consensus 260 ~~~g~~lhvD~A~g~~~~~~~----~~~~~~~~~-----~~aDs-~~~~~hK~l~--~p~~~g~l~~--r~~~~~~~~~~ 325 (486)
++||+++++|.+|+.+.+... ........+ ..... +..+++|.+. ....+|++++ .++........
T Consensus 265 ~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~ 344 (498)
T 3ihj_A 265 WEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVK 344 (498)
T ss_dssp HHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHH
T ss_pred HHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHH
Confidence 999999999999987544211 111111100 01223 3457899984 3455787765 45443322211
Q ss_pred CCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC------------hhhHHHHHHHHHHHHHHHHHHHhcC
Q 041829 326 TNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG------------LENLQGYIRNHIQLAKHFEGLVAQD 393 (486)
Q Consensus 326 ~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g------------~~g~~~~~~~~~~~a~~l~~~l~~~ 393 (486)
....++ + ...+..++....+. .+..+++.++..++++++.+.|+++
T Consensus 345 ~~~~~~-------------------~---~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 402 (498)
T 3ihj_A 345 LLSVRL-------------------C---PPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQV 402 (498)
T ss_dssp HHHHSC-------------------C---CCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHhccC-------------------C---CCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 111111 0 01222222222221 1123456677888999999999999
Q ss_pred CCeEEecCCCceEEEE-EecCCCCCc-----ccchHHHHH-HHHHHHccCcEEEEeeeE---CCEeEEEEEecCCCCCHH
Q 041829 394 LRFEVVTPRIFSLVCF-RLLPPHNDE-----DHGNKLNHK-LLDDINSTGKIFISHTVL---SGKYILRFAVGAPLTEWR 463 (486)
Q Consensus 394 ~~~~~~~~~~~~~v~f-~~~~~~~~~-----~~~~~~~~~-l~~~l~~~g~~~~~~~~~---~~~~~lRi~~~~~~~t~~ 463 (486)
|++++. +|..+++.| ++....... ..... ... +...|.+.|..++.+..+ .+..++|+++ . .+++
T Consensus 403 ~g~~~~-~p~gg~~~~~~l~~p~~~~~~~~~~g~~~-~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~-~--~~~e 477 (498)
T 3ihj_A 403 PGIHCN-PLQGAMYAFPRIFIPAKAVEAAQAHQMAP-DMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI-L--PPVE 477 (498)
T ss_dssp TTEECC-CCCBSSEECCEECCCHHHHHHHHHTTSCH-HHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC-C--SCHH
T ss_pred CCcEec-CCCeEEEEEEeccCchhhhHHHHhcCCCc-HHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe-C--CCHH
Confidence 999876 556666655 443110000 00011 111 234445567555544333 3456899999 3 5899
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 041829 464 HVNAAWEVMQDKASALLARL 483 (486)
Q Consensus 464 di~~~~~~l~~~~~~l~~~~ 483 (486)
++++++++|.++.+++.+++
T Consensus 478 ~l~~~i~~L~~~~~~~~~~~ 497 (498)
T 3ihj_A 478 KLKTVLQKVKDFHINFLEKY 497 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998887654
No 117
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.90 E-value=4.2e-22 Score=199.84 Aligned_cols=286 Identities=15% Similarity=0.184 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHH--
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKAC-- 192 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~-- 192 (486)
.....++.+++++++|.+. .+++++||+|+..++.+... +++.|+++...|.++...+
T Consensus 63 ~~~~~~l~~~la~~~g~~~---------~i~~~sG~~a~~~~l~~~~~-----------~gd~vi~~~~~~~~~~~~~~~ 122 (398)
T 2rfv_A 63 NPTTDALEKKLAVLERGEA---------GLATASGISAITTTLLTLCQ-----------QGDHIVSASAIYGCTHAFLSH 122 (398)
T ss_dssp CHHHHHHHHHHHHHHTCSE---------EEEESSHHHHHHHHHHHHCC-----------TTCEEEEESSSCHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhCCCc---------EEEECCHHHHHHHHHHHHhC-----------CCCEEEEcCCCcccHHHHHHH
Confidence 4555666677999999763 67777889999888876532 5678899999999988876
Q ss_pred --HHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeec
Q 041829 193 --QIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDA 270 (486)
Q Consensus 193 --~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~ 270 (486)
+..|+ +++.+|.+ |+++|+++++++ +.+|+++.++|++|.+.|+++|+++|+++|+++|+|+
T Consensus 123 ~~~~~g~---~~~~v~~~-------d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De 186 (398)
T 2rfv_A 123 SMPKFGI---NVRFVDAA-------KPEEIRAAMRPE------TKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDN 186 (398)
T ss_dssp HHHHTTC---EEEEECTT-------SHHHHHHHCCTT------EEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHcCC---EEEEeCCC-------CHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEEC
Confidence 77888 88888763 889999888642 5688899999999999999999999999999999999
Q ss_pred cccchhccCccchhcccCCcCCCceeeecccccCCCCc--ceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCc
Q 041829 271 AYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFD--CSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQ 348 (486)
Q Consensus 271 A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~--~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 348 (486)
+|+.+....+ . . . ++|+++.++||++++|.. +|+++.++. .+...+.. +...
T Consensus 187 ~~~~~~~~~~-~-~----~-~~di~~~s~sK~~~~~g~~~~G~~~~~~~-~~~~~~~~---~~~~--------------- 240 (398)
T 2rfv_A 187 TFMSPYCQQP-L-Q----L-GADIVVHSVTKYINGHGDVIGGIIVGKQE-FIDQARFV---GLKD--------------- 240 (398)
T ss_dssp TTTCTTTCCG-G-G----G-TCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHT---HHHH---------------
T ss_pred CCcccccCCc-h-h----h-CCcEEEEeCcccccCCCCceEEEEEECHH-HHHHHHHH---HHHh---------------
Confidence 9986554321 1 1 1 589999999999988876 588877653 23211111 1100
Q ss_pred cCC-CCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEe--------------cC---CCceEEEEE
Q 041829 349 IPL-GRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVV--------------TP---RIFSLVCFR 410 (486)
Q Consensus 349 ~~~-sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~--------------~~---~~~~~v~f~ 410 (486)
. +.....+..|++++.+ +.+..++++..++++.+.+.|++.+.++-+ .+ ...++++|.
T Consensus 241 --~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~ 316 (398)
T 2rfv_A 241 --ITGGCMSPFNAWLTLRGV--KTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFE 316 (398)
T ss_dssp --TTCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE
T ss_pred --CCCCCCCHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEE
Confidence 0 1112345566666555 234556667777888888888876544322 11 246788887
Q ss_pred ecCCCCCcccchHHHHHHHHHHHccCcEEEEeee----------------------ECC--EeEEEEEecCCCCCHHHHH
Q 041829 411 LLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTV----------------------LSG--KYILRFAVGAPLTEWRHVN 466 (486)
Q Consensus 411 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----------------------~~~--~~~lRi~~~~~~~t~~di~ 466 (486)
+.. ......++.+++...| +.++... ..| .+.+|+++ ...+++++|+
T Consensus 317 ~~~-------~~~~~~~l~~~~~~~~-i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~-~~~~~~~~i~ 387 (398)
T 2rfv_A 317 IAG-------GLEAGRRMINSVELCL-LAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSV-GLEDPEDIIN 387 (398)
T ss_dssp ETT-------HHHHHHHHHTTCSSSE-ECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEEC-CSSCHHHHHH
T ss_pred EcC-------CHHHHHHHHHhCCcce-eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEe-cCCCHHHHHH
Confidence 753 1222344554443333 2222110 012 46899999 7788999999
Q ss_pred HHHHHHHHH
Q 041829 467 AAWEVMQDK 475 (486)
Q Consensus 467 ~~~~~l~~~ 475 (486)
++.++|+++
T Consensus 388 ~l~~al~~~ 396 (398)
T 2rfv_A 388 DLEHAIRKA 396 (398)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998764
No 118
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.90 E-value=1.3e-21 Score=197.93 Aligned_cols=325 Identities=15% Similarity=0.077 Sum_probs=213.5
Q ss_pred HHHHHHHHHHhcCcCcccccc-ChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHh
Q 041829 90 AGFLGEMLSAGLNIVGFSWIT-SPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRV 168 (486)
Q Consensus 90 ~~~~~~~l~~~~n~~~~~~~~-~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 168 (486)
|..+.+.+...+... .|.. ++...+++++ +++++|.+ ..++|+|||+++..++.+..
T Consensus 31 p~~~~~a~~~~~~~~--~y~~~~~~~~~l~~~----la~~~~~~---------~v~~~~ggt~al~~~l~~l~------- 88 (424)
T 2po3_A 31 RARLYERLDRALDSQ--WLSNGGPLVREFEER----VAGLAGVR---------HAVATCNATAGLQLLAHAAG------- 88 (424)
T ss_dssp HHHHHHHHHHHHHHT--CCSSSCHHHHHHHHH----HHHHHTSS---------EEEEESCHHHHHHHHHHHHT-------
T ss_pred hHHHHHHHHHHHhcC--CcccCCHHHHHHHHH----HHHHhCCC---------eEEEeCCHHHHHHHHHHHcC-------
Confidence 344455555555432 2444 5667777776 77777764 38999999999998887652
Q ss_pred CccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 169 GKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 169 ~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
+++.|+++..+|.++..+++..|+ +++.+|++++ ++.+|+++|++++++. +.+|+++ +++|.
T Consensus 89 -----~gd~Vlv~~~~~~~~~~~~~~~G~---~~~~v~~~~~-~~~~d~~~l~~~i~~~------~~~v~~~---~~tG~ 150 (424)
T 2po3_A 89 -----LTGEVIMPSMTFAATPHALRWIGL---TPVFADIDPD-TGNLDPDQVAAAVTPR------TSAVVGV---HLWGR 150 (424)
T ss_dssp -----CCSEEEEESSSCTHHHHHHHHTTC---EEEEECBCTT-TSSBCHHHHGGGCCTT------EEEEEEE---CGGGC
T ss_pred -----CCCEEEECCCccHHHHHHHHHcCC---EEEEEecCCC-cCCcCHHHHHHhhCcC------CcEEEEE---CCCCC
Confidence 346788899999999999999999 9999999863 4789999999988642 3456654 37999
Q ss_pred cCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecc--cccCCCCcceEEEEeCchHHHHHhcC
Q 041829 249 VDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAH--KWFLTNFDCSALWVKDRNTLIQSLST 326 (486)
Q Consensus 249 id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~h--K~l~~p~~~g~l~~r~~~~~~~~~~~ 326 (486)
+.++++|.++|+++|+++++|++|+.+..+.. .. +. ...|.++.++| |++.+ ..+|+++.++++.+......
T Consensus 151 ~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~--~~-~~--~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~ 224 (424)
T 2po3_A 151 PCAADQLRKVADEHGLRLYFDAAHALGCAVDG--RP-AG--SLGDAEVFSFHATKAVNA-FEGGAVVTDDADLAARIRAL 224 (424)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTCTTCEETT--EE-TT--SSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCEEEEECccccCCeECC--ee-cc--cccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999984332211 11 11 12477777766 88766 56777777655433322111
Q ss_pred CcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC---
Q 041829 327 NPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRI--- 403 (486)
Q Consensus 327 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~--- 403 (486)
. .+.... .+... ......++..+.+++++.. .+++++..++..++++++.+.|+++|++++..++.
T Consensus 225 ~-~~~~~~------~~~~~--~~g~~~~~~~~~aa~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~ 293 (424)
T 2po3_A 225 H-NFGFDL------PGGSP--AGGTNAKMSEAAAAMGLTS--LDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGL 293 (424)
T ss_dssp H-BTTTTC------TTCCT--TCCCBCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSC
T ss_pred H-hcCccc------ccccc--ccCcCCCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCc
Confidence 0 000000 00000 1112223445555555543 46678888899999999999999998999875332
Q ss_pred --ceEEEEEecCC--CCCcccchHHHHHHHHHHHccCcEEEEeeeE-C--------C------E-------eEEEEEecC
Q 041829 404 --FSLVCFRLLPP--HNDEDHGNKLNHKLLDDINSTGKIFISHTVL-S--------G------K-------YILRFAVGA 457 (486)
Q Consensus 404 --~~~v~f~~~~~--~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~--------~------~-------~~lRi~~~~ 457 (486)
+.++.+.+... + . ...++.+.|.+.| +.+.+... . + . ..+|+++ +
T Consensus 294 ~~~~~~~i~~~~~~~~-----~--~~~~l~~~L~~~g-I~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~-~ 364 (424)
T 2po3_A 294 NNHQYVIVEIDEATTG-----I--HRDLVMEVLKAEG-VHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPT-G 364 (424)
T ss_dssp CCCCCEEEEECHHHHS-----S--CHHHHHHHHHHTT-EECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECC-S
T ss_pred cccEEEEEEECCccch-----h--hHHHHHHHHHHCC-CceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeC-C
Confidence 24555665310 0 0 1245677777777 44443100 0 0 0 1277776 7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 041829 458 PLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 458 ~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
..++++|+++++++|+++.++..
T Consensus 365 ~~~t~e~i~~~~~~L~~~~~~~~ 387 (424)
T 2po3_A 365 TAIGDDDIRRVADLLRLCATRGR 387 (424)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhhH
Confidence 89999999999999999886654
No 119
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.90 E-value=3.6e-22 Score=201.80 Aligned_cols=340 Identities=11% Similarity=0.040 Sum_probs=221.7
Q ss_pred HHHHHHHHHhcCcCc--cccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHh
Q 041829 91 GFLGEMLSAGLNIVG--FSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRV 168 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~--~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 168 (486)
..+.+.+...+.... ..|....+..++++++.+|+.+.+|.+.+. ....++|+|||+++..++.+...
T Consensus 44 ~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~----~~~i~~~~g~~~a~~~~~~~~~~------ 113 (422)
T 3fvs_A 44 DFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDP----LRNVLVTVGGYGALFTAFQALVD------ 113 (422)
T ss_dssp HHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCH----HHHEEEESHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCC----CCcEEEECChHHHHHHHHHHHcC------
Confidence 344455544443322 345555567899999999999999875320 01489999999999888876533
Q ss_pred CccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCC----C------CCCccCHHHHHHHHHHHHhCCCccEEEE
Q 041829 169 GKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDS----S------TNYSLSPDSLAEAISRDLTIGLIPFFLC 238 (486)
Q Consensus 169 ~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~----~------~~~~id~~~L~~~i~~~~~~g~~p~~vv 238 (486)
+++.|+++...|.++...++..|. +++.+|+++ + .+|.+|+++|++++++. +.+|+
T Consensus 114 -----~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~------~~~v~ 179 (422)
T 3fvs_A 114 -----EGDEVIIIEPFFDCYEPMTMMAGG---RPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR------TKALV 179 (422)
T ss_dssp -----TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTT------EEEEE
T ss_pred -----CCCEEEEcCCCchhhHHHHHHcCC---EEEEEecccccccccccccccCCCCCHHHHHhhcCCC------ceEEE
Confidence 667788899999999999999999 999999886 2 25789999999988643 46788
Q ss_pred EecCCccccccC---ChHHHHHHHHHhCCEEEeeccccchhccCccchhcc--cCCcCCCceeeecccccCCC-CcceEE
Q 041829 239 ATVGTTSSTAVD---PLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYI--DGVEEADSFNMNAHKWFLTN-FDCSAL 312 (486)
Q Consensus 239 ~~~~~t~tG~id---~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~--~~~~~aDs~~~~~hK~l~~p-~~~g~l 312 (486)
++.++|++|.+- ++++|+++|+++|+++++|++|+.+........... ......+.+..+++|.++.| ..+|++
T Consensus 180 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~ 259 (422)
T 3fvs_A 180 LNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWV 259 (422)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEE
T ss_pred ECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEE
Confidence 889999999997 599999999999999999999986543211111111 11113346677899999744 567888
Q ss_pred EEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHH------hChhhHHHHHHHHHHHHHHH
Q 041829 313 WVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRL------YGLENLQGYIRNHIQLAKHF 386 (486)
Q Consensus 313 ~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~------~g~~g~~~~~~~~~~~a~~l 386 (486)
+.+++ .+.. +....... .+ ....+....+..+++. ...+.++++.++..++++++
T Consensus 260 ~~~~~-~~~~-~~~~~~~~--------------~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 320 (422)
T 3fvs_A 260 LGPDH-IMKH-LRTVHQNS--------------VF---HCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHM 320 (422)
T ss_dssp ECCHH-HHHH-HHHHHHTT--------------TC---CCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred EeCHH-HHHH-HHHHHhhc--------------cC---CCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHH
Confidence 76543 2222 11100000 00 0001111222333332 13466788889999999999
Q ss_pred HHHHhcCCCeEEecCCCceEEEEEecCCC--CC---cccchHHHHHHHHHHHc-cCcEEEEe-eeE-------CCEeEEE
Q 041829 387 EGLVAQDLRFEVVTPRIFSLVCFRLLPPH--ND---EDHGNKLNHKLLDDINS-TGKIFISH-TVL-------SGKYILR 452 (486)
Q Consensus 387 ~~~l~~~~~~~~~~~~~~~~v~f~~~~~~--~~---~~~~~~~~~~l~~~l~~-~g~~~~~~-~~~-------~~~~~lR 452 (486)
.+.|+++ ++++..+....++.+.+.... .. .........++...+.+ .| +.+.+ ..+ .+.+++|
T Consensus 321 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g-v~v~~g~~f~~~~~~~~~~~~iR 398 (422)
T 3fvs_A 321 IRSLQSV-GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKG-LVAIPVSIFYSVPHQKHFDHYIR 398 (422)
T ss_dssp HHHHHTT-TCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHC-EECEEGGGGSCHHHHTTSCSEEE
T ss_pred HHHHHHc-CCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcC-EEEeCcHHhcCCcCCCCCCCeEE
Confidence 9999998 898775555555555553200 00 00000002456666554 56 44444 333 2467999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 453 FAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 453 i~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
+++ .. ++++|++++++|+++.++
T Consensus 399 is~-~~--~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 399 FCF-VK--DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp EEC-CC--CHHHHHHHHHHHHHHHHC
T ss_pred EEe-cC--CHHHHHHHHHHHHHHHhh
Confidence 998 33 999999999999987653
No 120
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.90 E-value=7e-22 Score=196.61 Aligned_cols=322 Identities=14% Similarity=0.124 Sum_probs=215.4
Q ss_pred HHHHHHHHHhcCcC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhC
Q 041829 91 GFLGEMLSAGLNIV-GFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVG 169 (486)
Q Consensus 91 ~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 169 (486)
..+.+.+...+... ...|...++..++++++.+|+.+.+|.+.+. ....++|+|||+++..++.+..+
T Consensus 41 ~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~----~~~v~~~~g~~~a~~~~~~~l~~------- 109 (376)
T 2dou_A 41 EAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDP----RREALALIGSQEGLAHLLLALTE------- 109 (376)
T ss_dssp HHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCT----TTSEEEESSHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CccEEEcCCcHHHHHHHHHHhcC-------
Confidence 34556666655432 2334333477889999999998888986210 01489999999999888776532
Q ss_pred ccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 170 KNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 170 ~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++.|+++..+|.++...++..|. +++.+|+ ++ ++.+|+++|++++++. +.+|+++.++|+||.+
T Consensus 110 ----~gd~vl~~~p~y~~~~~~~~~~g~---~~~~~~~-~~-~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~ 174 (376)
T 2dou_A 110 ----PEDLLLLPEVAYPSYFGAARVASL---RTFLIPL-RE-DGLADLKAVPEGVWRE------AKVLLLNYPNNPTGAV 174 (376)
T ss_dssp ----TTCEEEEESSCCHHHHHHHHHTTC---EEEEECB-CT-TSSBCGGGSCHHHHHH------EEEEEECSSCTTTCCC
T ss_pred ----CCCEEEECCCCcHhHHHHHHHcCC---EEEEeeC-CC-CCCCCHHHHHHhhccC------ceEEEECCCCCCcCcc
Confidence 567888899999999999999999 9999998 33 4689999999999643 4578888899999999
Q ss_pred CC---hHHHHHHHHHhCCEEEeeccccchhccCccchhccc--CCcCCCceeeecccccCCC-CcceEEEEeCchHHHHH
Q 041829 250 DP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYID--GVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQS 323 (486)
Q Consensus 250 d~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~--~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~ 323 (486)
-| +++|+++|+++|+++++|++|+.+.... .....+. +....+.+..+++|+++.| ..+|+++.+ ++... .
T Consensus 175 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~-~ 251 (376)
T 2dou_A 175 ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGS-EEALA-R 251 (376)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEEC-HHHHH-H
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecC-HHHHH-H
Confidence 66 7889999999999999999998764321 1111111 1123457788999999744 357887764 33332 2
Q ss_pred hcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--ChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Q 041829 324 LSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--GLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTP 401 (486)
Q Consensus 324 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 401 (486)
+....... + .+ ...+...++...+ +.+.+++..++..++++++.+.|+++ +++..+
T Consensus 252 l~~~~~~~----------------~--~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~ 309 (376)
T 2dou_A 252 LERVKGVI----------------D--FN--QYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV--LSLLPP 309 (376)
T ss_dssp HHHHHHHH----------------C--CC--SCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT--SEECCC
T ss_pred HHHHHHhc----------------c--cC--CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCC
Confidence 21100000 0 00 1122333333333 35677888888899999999999887 776533
Q ss_pred CCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEee-eEC--CEeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 402 RIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHT-VLS--GKYILRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 402 ~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
....++.+++.. + .+ ..++.+.|.++| +.+.+. .+. +..++|+++ .. +++++++++++|+++
T Consensus 310 ~~~~~~~~~~~~-~-----~~--~~~~~~~l~~~g-i~v~~g~~f~~~~~~~~Ris~-~~--~~~~i~~~l~~l~~~ 374 (376)
T 2dou_A 310 RATMYLWGRLPE-G-----VD--DLEFGLRLVERG-VALAPGRGFGPGGKGFVRIAL-VR--PLEELLEAAKRIREA 374 (376)
T ss_dssp CBSSEEEEECCT-T-----CC--HHHHHHHHHHTT-EECEEGGGGCGGGTTEEEEEC-CS--CHHHHHHHHHHHHHT
T ss_pred CeeEEEEEECCC-C-----CC--HHHHHHHHHHCC-EEEcCchhhCCCCCCeEEEEe-cC--CHHHHHHHHHHHHHH
Confidence 333345566642 1 11 246778888887 444443 222 246899999 43 789999999999765
No 121
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.90 E-value=1.7e-22 Score=203.06 Aligned_cols=325 Identities=10% Similarity=0.033 Sum_probs=217.8
Q ss_pred HHHHHHHHHhcCcC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhC
Q 041829 91 GFLGEMLSAGLNIV-GFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVG 169 (486)
Q Consensus 91 ~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 169 (486)
..+.+.+...+... ...|...++..++++++.+|+.+.+|.+.+. ....++|+|||+++..++.+...
T Consensus 63 ~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~----~~~v~~t~G~~~al~~~~~~l~~------- 131 (404)
T 2o1b_A 63 QGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDK----EDEVCILYGTKNGLVAVPTCVIN------- 131 (404)
T ss_dssp HHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCT----TTSEEEESSHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----cccEEEcCCcHHHHHHHHHHhcC-------
Confidence 34555565555432 2234444577899999999999988976210 01589999999999888876532
Q ss_pred ccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 170 KNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 170 ~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++.|+++..+|.++..+++..|. +++.+|.+++ ++.+|+++|++++++. +.+|+++.++|+||.+
T Consensus 132 ----~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~ 197 (404)
T 2o1b_A 132 ----PGDYVLLPDPGYTDYLAGVLLADG---KPVPLNLEPP-HYLPDWSKVDSQIIDK------TKLIYLTYPNNPTGST 197 (404)
T ss_dssp ----TTCEEEEEESCCSSHHHHHHHTTC---EEEEEECCTT-TCCCCGGGSCHHHHHH------EEEEEECSSCTTTCCC
T ss_pred ----CCCEEEEcCCCchhHHHHHHHCCC---EEEEeccCcc-cCcCCHHHHHHhhccC------ceEEEEcCCCCCCCcc
Confidence 567788889999999999999999 9999999863 4679999999999654 4577788899999999
Q ss_pred CC---hHHHHHHHHHhCCEEEeeccccchhccCccchhccc--CCcCCCceeeecccccCCC-CcceEEEEeCchHHHHH
Q 041829 250 DP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYID--GVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQS 323 (486)
Q Consensus 250 d~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~--~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~ 323 (486)
-| +++|+++|+++|+++++|++|+.+.... ....... +....+.++.++||+++.| ..+|+++.+ ++.+. .
T Consensus 198 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~-~ 274 (404)
T 2o1b_A 198 ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGN-KDMIQ-A 274 (404)
T ss_dssp CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEEC-HHHHH-H
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchhccCchhheEeEecC-HHHHH-H
Confidence 65 7899999999999999999998754311 1111111 1113467788999999744 357887764 33332 2
Q ss_pred hcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--ChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Q 041829 324 LSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--GLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTP 401 (486)
Q Consensus 324 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 401 (486)
+.....+. .. ....+..+++...+ +.+.++++.++..++++++.+.|+++ ++++..
T Consensus 275 l~~~~~~~------------------~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~- 332 (404)
T 2o1b_A 275 LKKYQTHT------------------NA--GMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVH- 332 (404)
T ss_dssp HHHHHHHH------------------CC--CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEC-
T ss_pred HHHHHhhc------------------cC--CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCeecC-
Confidence 21100000 00 01222333333322 35677888888999999999999998 788764
Q ss_pred CCceE-EEEEecCCCCCcccchHHHHHHHHHHHc-cCcEEEEee-eEC--CEeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q 041829 402 RIFSL-VCFRLLPPHNDEDHGNKLNHKLLDDINS-TGKIFISHT-VLS--GKYILRFAVGAPLTEWRHVNAAWEVMQDKA 476 (486)
Q Consensus 402 ~~~~~-v~f~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~-~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~~ 476 (486)
+..++ +.+++.. . .+ ..++.++|.+ .| +.+.+. .+. +..++|+++ .. +++++++++++|.+++
T Consensus 333 ~~~g~~~~~~~~~-~-----~~--~~~l~~~l~~~~g-i~v~~g~~f~~~~~~~iRis~-~~--~~e~l~~~l~~l~~~l 400 (404)
T 2o1b_A 333 AKGGIYVWLETPP-G-----YD--SEQFEQFLVQEKS-ILVAPGKPFGENGNRYVRISL-AL--DDQKLDEAAIRLTELA 400 (404)
T ss_dssp CCBSSEEEEECCT-T-----CC--HHHHHHHHHHHHC-EECEESGGGCGGGTTEEEEEC-CS--CTTHHHHHHHHHHGGG
T ss_pred CCcceEEEEeCCC-C-----CC--HHHHHHHHHHHCC-EEEeCchhhCcCCCCeEEEEE-cC--CHHHHHHHHHHHHHHH
Confidence 44444 5556642 1 11 2456677664 57 444443 222 246899999 33 6789999999998765
Q ss_pred H
Q 041829 477 S 477 (486)
Q Consensus 477 ~ 477 (486)
+
T Consensus 401 ~ 401 (404)
T 2o1b_A 401 Y 401 (404)
T ss_dssp G
T ss_pred H
Confidence 4
No 122
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.9e-23 Score=208.77 Aligned_cols=337 Identities=12% Similarity=0.068 Sum_probs=223.4
Q ss_pred HHHHHHHHHHhcCc-CccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHh
Q 041829 90 AGFLGEMLSAGLNI-VGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRV 168 (486)
Q Consensus 90 ~~~~~~~l~~~~n~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 168 (486)
+..+.+.+...+.. ....|....+..++++++.+|+.+.+|.+.+ ....++|+||++|+..++.+..+
T Consensus 72 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~-----~~~v~~t~G~~~al~~~~~~l~~------ 140 (447)
T 3b46_A 72 PQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELK-----AENVTVTTGANEGILSCLMGLLN------ 140 (447)
T ss_dssp CHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCC-----GGGEEEESHHHHHHHHHHHHHCC------
T ss_pred CHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC-----hhhEEEeCCHHHHHHHHHHHHcC------
Confidence 45566666666654 2334555556789999999999888886432 12589999999999988876543
Q ss_pred CccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCC----------CCccCHHHHHHHHHHHHhCCCccEEEE
Q 041829 169 GKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSST----------NYSLSPDSLAEAISRDLTIGLIPFFLC 238 (486)
Q Consensus 169 ~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~----------~~~id~~~L~~~i~~~~~~g~~p~~vv 238 (486)
+++.|+++...|.++...++..|. +++.+|+++++ +|.+|+++|++++++. +.+|+
T Consensus 141 -----~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~ 206 (447)
T 3b46_A 141 -----AGDEVIVFEPFFDQYIPNIELCGG---KVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSK------TKAVI 206 (447)
T ss_dssp -----TTCEEEEEESCCTTHHHHHHHTTC---EEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTT------EEEEE
T ss_pred -----CCCEEEEeCCCchhHHHHHHHcCC---EEEEEeCCCccccccccccccCcccCHHHHHHhhccC------CeEEE
Confidence 677888899999999999999999 99999987542 4789999999988532 56788
Q ss_pred EecCCcccccc---CChHHHHHHHHHhCCEEEeeccccchhccCccchhcc---cCCcCCCceeeecccccCCC-CcceE
Q 041829 239 ATVGTTSSTAV---DPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYI---DGVEEADSFNMNAHKWFLTN-FDCSA 311 (486)
Q Consensus 239 ~~~~~t~tG~i---d~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~---~~~~~aDs~~~~~hK~l~~p-~~~g~ 311 (486)
++.++|+||.+ +++++|+++|++||+++++|++|+.+.... ...... .+..+.|.++.++||+++.| ..+|+
T Consensus 207 l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~ 285 (447)
T 3b46_A 207 INTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGW 285 (447)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEE
T ss_pred EeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEE
Confidence 88999999998 579999999999999999999998754321 111111 11225788899999999743 45898
Q ss_pred EEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC-hhhHHHHHHHHHHHHHHHHHHH
Q 041829 312 LWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG-LENLQGYIRNHIQLAKHFEGLV 390 (486)
Q Consensus 312 l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~l 390 (486)
++.+++..+.. +.....+.. .+.......++..+++... .+.++++.++..++++++.+.|
T Consensus 286 ~~~~~~~l~~~-l~~~~~~~~-----------------~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L 347 (447)
T 3b46_A 286 VLSLNAELLSY-AAKAHTRIC-----------------FASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIF 347 (447)
T ss_dssp EECSCHHHHHH-HHHHHHHHT-----------------SSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHH-HHHHHhhcc-----------------CCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88745443322 211000000 0000111122333343321 3457778888999999999999
Q ss_pred hcCCCeEEecCCCceEEEEEecCCCCCccc-------chHHHHHHHHHHHc-cCcEEEEee-eEC-------CEeEEEEE
Q 041829 391 AQDLRFEVVTPRIFSLVCFRLLPPHNDEDH-------GNKLNHKLLDDINS-TGKIFISHT-VLS-------GKYILRFA 454 (486)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~-------~~~~~~~l~~~l~~-~g~~~~~~~-~~~-------~~~~lRi~ 454 (486)
+++ ++++..+.....+.+.+......... ......++.+.|.+ .| +.+.+. .+. +..++|++
T Consensus 348 ~~~-g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~g-V~v~pg~~f~~~~~~~~~~~~iRls 425 (447)
T 3b46_A 348 DEL-GLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELG-VVAIPPTEFYIKEHEKAAENLLRFA 425 (447)
T ss_dssp HHH-TCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTC-EECBCGGGGSCGGGGGGGTTEEEEE
T ss_pred HHC-CCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCC-EEEECchHhCCCCccCCCCCEEEEE
Confidence 987 78876444444555666431000000 00123567777764 56 444433 221 24689999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q 041829 455 VGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 455 ~~~~~~t~~di~~~~~~l~~~ 475 (486)
+ . .++++|++++++|.++
T Consensus 426 ~-~--~~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 426 V-C--KDDAYLENAVERLKLL 443 (447)
T ss_dssp C-C--SCHHHHHHHHHHGGGG
T ss_pred E-e--CCHHHHHHHHHHHHHH
Confidence 9 3 3899999999998763
No 123
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.90 E-value=1.1e-22 Score=200.01 Aligned_cols=318 Identities=14% Similarity=0.131 Sum_probs=197.9
Q ss_pred HHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCcc
Q 041829 92 FLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKN 171 (486)
Q Consensus 92 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 171 (486)
.+.+.+...... ...|...+...++++. +++++|.+. .++++|||+++..++.+..+
T Consensus 19 ~~~~a~~~~~~~-~~~y~~~~~~~~l~~~----la~~~g~~~---------~~~~~~gt~a~~~~~~~~~~--------- 75 (347)
T 1jg8_A 19 EMRKAMAQAEVG-DDVYGEDPTINELERL----AAETFGKEA---------ALFVPSGTMGNQVSIMAHTQ--------- 75 (347)
T ss_dssp HHHHHHHTCCCC-CGGGTCCHHHHHHHHH----HHHHHTCSE---------EEEESCHHHHHHHHHHHHCC---------
T ss_pred HHHHHHhcCCCC-CcccCCChHHHHHHHH----HHHHhCCce---------EEEecCcHHHHHHHHHHhcC---------
Confidence 444545443221 2245556666677665 888888753 68889999998877765432
Q ss_pred CCCCeEEEecCCCchhHHH---HHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccc-c
Q 041829 172 SLEKLVVYASDQTHSALQK---ACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSS-T 247 (486)
Q Consensus 172 ~~~~~~v~~s~~~H~s~~~---a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~t-G 247 (486)
+++.|+++..+|.+... .+...|+ +++.+ .++ ++.+|+++|++++++....+.++.+|+++.++|++ |
T Consensus 76 --~gd~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v-~~~--~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G 147 (347)
T 1jg8_A 76 --RGDEVILEADSHIFWYEVGAMAVLSGV---MPHPV-PGK--NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGG 147 (347)
T ss_dssp --TTCEEEEETTCHHHHSSTTHHHHHTCC---EEEEE-CEE--TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTS
T ss_pred --CCCEEEEcCcchhhhccccchhhccCe---EEEEe-cCC--CCccCHHHHHHHhccccccccCceEEEEeccccccCC
Confidence 67788899999987654 5677888 88877 433 35799999999885411011235788889999999 9
Q ss_pred ccCC---hHHHHHHHHHhCCEEEeeccccchhc--cCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHH
Q 041829 248 AVDP---LLALGNIAKSNGMWFHVDAAYAGSAC--ICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQ 322 (486)
Q Consensus 248 ~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~--~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~ 322 (486)
.+-| +++|+++|+++|+++|+|+||..+.. ........ ...+|.+++++||+++.| .|.+++.+++.+.+
T Consensus 148 ~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~sK~l~~~--~G~~~~~~~~~~~~ 222 (347)
T 1jg8_A 148 RVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEY---AGYADSVMFCLSKGLCAP--VGSVVVGDRDFIER 222 (347)
T ss_dssp BCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHH---HHTCSEEEEESSSTTCCS--SCEEEEECHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHh---cccccEEEEecccccCCC--ceEEEEcCHHHHHH
Confidence 9855 57899999999999999998742111 11111111 125788899999999877 45445555543332
Q ss_pred HhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cC
Q 041829 323 SLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVV-TP 401 (486)
Q Consensus 323 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~-~~ 401 (486)
....... .. .+-+...+..+++...+. ...+.+++..++++++.+.|+++ ++++. .+
T Consensus 223 ~~~~~~~-~~------------------~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~ 280 (347)
T 1jg8_A 223 ARKARKM-LG------------------GGMRQAGVLAAAGIIALT--KMVDRLKEDHENARFLALKLKEI-GYSVNPED 280 (347)
T ss_dssp HHHHHHH-HT------------------CCCSSTHHHHHHHHHHHH--HSSTTHHHHHHHHHHHHHHHHHH-TCBCCGGG
T ss_pred HHHHHHH-cC------------------CchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc-CceeccCC
Confidence 2111111 00 000111222222222211 11112334456778888888887 77753 34
Q ss_pred CCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 402 RIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 402 ~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
+..+++++++...+ .+ ..++.++|.+.| +.+.+.. ..++|+++ +..++++|+++++++|+++.+++
T Consensus 281 ~~~~~~~~~~~~~~-----~~--~~~~~~~l~~~g-i~v~~~~---~~~iRl~~-~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 281 VKTNMVILRTDNLK-----VN--AHGFIEALRNSG-VLANAVS---DTEIRLVT-HKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp CCSSEEEEECTTSS-----SC--HHHHHHHHHHHT-EECEEEE---TTEEEEEC-CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEccccc-----CC--HHHHHHHHHHCC-CEEecCC---CCeEEEEe-CCCCCHHHHHHHHHHHHHHHHhc
Confidence 55667777764211 11 246777777777 4444321 24799998 77889999999999999887643
No 124
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.90 E-value=1.2e-21 Score=195.90 Aligned_cols=332 Identities=13% Similarity=0.079 Sum_probs=205.6
Q ss_pred HHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCcc
Q 041829 92 FLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKN 171 (486)
Q Consensus 92 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 171 (486)
.+.+.+...+... .|..++...++|++ +++++|.+. .+++++||+|+..++.+++... ...
T Consensus 16 ~~~~a~~~~~~~~--~~~~~~~~~~l~~~----la~~~~~~~---------~i~~~sGt~a~~~al~~~~~~~----~~~ 76 (390)
T 3b8x_A 16 LEYKAIQSVLDSK--MFTMGEYVKQYETQ----FAKTFGSKY---------AVMVSSGSTANLLMIAALFFTK----KPR 76 (390)
T ss_dssp HHHHHHHHHHHHT--CCSSCHHHHHHHHH----HHHHHTCSE---------EEEESCHHHHHHHHHHHTTSSS----SCS
T ss_pred HHHHHHHHHHHcC--CCCCChHHHHHHHH----HHHHHCCCc---------EEEECCHHHHHHHHHHHHHhhh----hcC
Confidence 3334444444321 24456777777777 778888763 7899999999988887652100 000
Q ss_pred CCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC
Q 041829 172 SLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP 251 (486)
Q Consensus 172 ~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~ 251 (486)
-.+++.|+++..+|.++..+++..|. +++.+|++++ +|.+|+++|+++++++ +.+|+++ +++|..+|
T Consensus 77 ~~~g~~Vi~~~~~~~~~~~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~i~~~------~~~v~~~---~~~g~~~~ 143 (390)
T 3b8x_A 77 LKKGDEIIVPAVSWSTTYYPLQQYGL---RVKFVDIDIN-TLNIDIESLKEAVTDS------TKAILTV---NLLGNPNN 143 (390)
T ss_dssp CCTTCEEEEESSSCHHHHHHHHHTTC---EEEEECBCTT-TCSBCHHHHHHHCCTT------EEEEEEE---CGGGCCCC
T ss_pred CCCcCEEEECCCCcHHHHHHHHHcCC---EEEEEecCcc-ccCcCHHHHHHHhCcC------CeEEEEE---CCccChhh
Confidence 01567899999999999999999999 9999999865 4799999999998653 3456665 36789999
Q ss_pred hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceee--ecccccCCCCcceEEEEeCchHHHHH--hcCC
Q 041829 252 LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNM--NAHKWFLTNFDCSALWVKDRNTLIQS--LSTN 327 (486)
Q Consensus 252 l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~--~~hK~l~~p~~~g~l~~r~~~~~~~~--~~~~ 327 (486)
+++|.++|+++|+++|+|+||+.+.... ... .+. ..|..++ .+.|.+++|.+ |+++.+++....+. +...
T Consensus 144 ~~~i~~l~~~~~~~li~D~a~~~g~~~~--~~~--~g~-~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~ 217 (390)
T 3b8x_A 144 FDEINKIIGGRDIILLEDNCESMGATFN--NKC--AGT-FGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAH 217 (390)
T ss_dssp HHHHHHHHTTSCCEEEEECTTCTTCEET--TEE--TTS-SSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBT
T ss_pred HHHHHHHHHHcCCEEEEECcCcccCEEC--Ccc--ccc-ccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhc
Confidence 9999999999999999999998544331 111 111 1244443 33444555544 77777764432211 1111
Q ss_pred cccccccccc-----cCCccCC-CCCc-cCCCCC--CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q 041829 328 PEFLKNKASQ-----ANMVVDY-KDWQ-IPLGRR--FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEV 398 (486)
Q Consensus 328 ~~yl~~~~~~-----~~~~~~~-~~~~-~~~sr~--~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~ 398 (486)
++....... ......+ ..+. ...|.+ ...+.+++++.. .+.+++..++..++++++.+.|+++|++++
T Consensus 218 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~--l~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 294 (390)
T 3b8x_A 218 -GWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ--LKKLPRFISVRRKNAEYFLDKFKDHPYLDV 294 (390)
T ss_dssp -TBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTCSSEEE
T ss_pred -CCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 100000000 0000000 0000 012222 345666666655 367888999999999999999999999988
Q ss_pred ecCC-CceE--EEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEe----e---e---EC--C--------------Ee
Q 041829 399 VTPR-IFSL--VCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISH----T---V---LS--G--------------KY 449 (486)
Q Consensus 399 ~~~~-~~~~--v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~----~---~---~~--~--------------~~ 449 (486)
..++ ..+. +.+.+..... .+ ..++.+.|.+.|. .+.. . . +. + ..
T Consensus 295 ~~~~~~~~~~~~~i~~~~~~~----~~--~~~l~~~L~~~gI-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (390)
T 3b8x_A 295 QQETGESSWFGFSFIIKKDSG----VI--RKQLVENLNSAGI-ECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKN 367 (390)
T ss_dssp CCCCSBCCCCEEEEEECTTSC----CC--HHHHHHHHHHTTB-CCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHH
T ss_pred CCCCCCcccEEEEEEecCcCc----cc--HHHHHHHHHHCCC-CeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcC
Confidence 6532 2333 4445542100 11 2457777777774 3332 1 0 00 0 13
Q ss_pred EEEEEecCCCCCHHHHHHHHHHH
Q 041829 450 ILRFAVGAPLTEWRHVNAAWEVM 472 (486)
Q Consensus 450 ~lRi~~~~~~~t~~di~~~~~~l 472 (486)
.+|+++ ++.+|++||++++++|
T Consensus 368 ~l~l~~-~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 368 GLFVGN-HQIELFDEIDYLREVL 389 (390)
T ss_dssp EEEEEC-CSSCCHHHHHHHHHHT
T ss_pred EEEeeC-CCCCCHHHHHHHHHhh
Confidence 799999 9999999999999876
No 125
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.89 E-value=3.3e-21 Score=190.50 Aligned_cols=289 Identities=11% Similarity=0.052 Sum_probs=202.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHH
Q 041829 112 PAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKA 191 (486)
Q Consensus 112 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a 191 (486)
+...++++. +++++|.+.+ ..++|+|||+++..++.++ +.|+++..+|.++...
T Consensus 61 ~~~~~l~~~----la~~~~~~~~-------~i~~~~g~t~al~~~~~~~---------------d~vi~~~~~~~~~~~~ 114 (361)
T 3ftb_A 61 VNYRRLNKS----IENYLKLKDI-------GIVLGNGASEIIELSISLF---------------EKILIIVPSYAEYEIN 114 (361)
T ss_dssp TTCHHHHHH----HHHHHTCCSC-------EEEEESSHHHHHHHHHTTC---------------SEEEEEESCCTHHHHH
T ss_pred ccHHHHHHH----HHHHhCCCcc-------eEEEcCCHHHHHHHHHHHc---------------CcEEEecCChHHHHHH
Confidence 444555555 7888887654 5899999999988877643 3588888899999999
Q ss_pred HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC---hHHHHHHHHHhCCEEEe
Q 041829 192 CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP---LLALGNIAKSNGMWFHV 268 (486)
Q Consensus 192 ~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~---l~~I~~ia~~~g~~lhv 268 (486)
++..|. +++.+|+++++ .+++++|++++++ +.+|+++.++|++|.+-| +++|+++|++||+++++
T Consensus 115 ~~~~g~---~~~~~~~~~~~--~~~~~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 182 (361)
T 3ftb_A 115 AKKHGV---SVVFSYLDENM--CIDYEDIISKIDD-------VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIII 182 (361)
T ss_dssp HHHTTC---EEEEEECCTTS--CCCHHHHHHHTTT-------CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHcCC---eEEEeecCccc--CCCHHHHHHhccC-------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEE
Confidence 999999 99999998654 7888999988865 247888999999999965 67788888899999999
Q ss_pred eccccchhccCccchh-cccCCcCCCceeeecccccCC-CCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCC
Q 041829 269 DAAYAGSACICPEYRQ-YIDGVEEADSFNMNAHKWFLT-NFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKD 346 (486)
Q Consensus 269 D~A~g~~~~~~~~~~~-~~~~~~~aDs~~~~~hK~l~~-p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~ 346 (486)
|++|+.+... ..... ...+......++.+++|.++. ...+|++++.++............|
T Consensus 183 De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~~---------------- 245 (361)
T 3ftb_A 183 DEAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNPW---------------- 245 (361)
T ss_dssp ECSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCTT----------------
T ss_pred ECcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCCC----------------
Confidence 9999876542 11110 001111233557789999974 3567887766665443221111110
Q ss_pred CccCCCCCCCcHHHHHHHHHhC-hhhHHHHHHHHHHHHHHHHHHHhcCCCeE-EecCCCceEEEEEecCCCCCcccchHH
Q 041829 347 WQIPLGRRFRSLKLWMVLRLYG-LENLQGYIRNHIQLAKHFEGLVAQDLRFE-VVTPRIFSLVCFRLLPPHNDEDHGNKL 424 (486)
Q Consensus 347 ~~~~~sr~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~l~~~~~~~-~~~~~~~~~v~f~~~~~~~~~~~~~~~ 424 (486)
....+..+++...+. .+.++++.++..++++++.+.|+++|+++ +. ++..+++.+++... +
T Consensus 246 -------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~-------~-- 308 (361)
T 3ftb_A 246 -------NINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVF-SPHANFVLCRLENI-------S-- 308 (361)
T ss_dssp -------CSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEE-CCSSSEEEEEESSS-------C--
T ss_pred -------CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceec-CCCCeEEEEEcCCC-------C--
Confidence 112334444444432 46678888899999999999999999998 65 55566777777531 1
Q ss_pred HHHHHHHHHccCcEEEEee-eEC--CEeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041829 425 NHKLLDDINSTGKIFISHT-VLS--GKYILRFAVGAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 425 ~~~l~~~l~~~g~~~~~~~-~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 477 (486)
..++.+.|.++| +.+.+. .+. +..++|+++ + +++++++++++|+++.+
T Consensus 309 ~~~l~~~l~~~g-i~v~~g~~~~~~~~~~iRis~-~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 309 GEKLYDSLLKED-IVIRRCCNFIGLDDSFVRFAI-K---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp HHHHHHHHHTTT-EECEECTTSTTCCTTEEEEEC-C---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-eEEeeCccCCCCCCCEEEEEc-C---CHHHHHHHHHHHHHHHh
Confidence 256778888887 555443 232 246899998 3 78899999999988764
No 126
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.89 E-value=1.2e-21 Score=193.56 Aligned_cols=330 Identities=11% Similarity=0.038 Sum_probs=207.5
Q ss_pred CCcccccCCCCCCHHHHHHHHHHHhcC-cCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHH
Q 041829 76 SPNYFAYYPSNSSVAGFLGEMLSAGLN-IVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVL 154 (486)
Q Consensus 76 ~p~~~~~~~~~~~~~~~~~~~l~~~~n-~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~ 154 (486)
+..|+|.-+. |..+..+.+++..... .....|..++...++|+. +++++|.+. .++++|||+|+.
T Consensus 11 ~~~~l~~~~~-p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~----la~~~~~~~---------~i~~~~G~~a~~ 76 (357)
T 3lws_A 11 QTTGQISGHG-KRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQK----FADVLGMDD---------AVFFPSGTMAQQ 76 (357)
T ss_dssp TCSEESSBSS-CCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHH----HHHHHTCSE---------EEEESCHHHHHH
T ss_pred hhcccccCCC-CCCHHHHHHHHHHhhcccCcccccCChHHHHHHHH----HHHHhCCCc---------EEEecCcHHHHH
Confidence 3456665433 4556666666654221 122345455666777766 888888754 577788999999
Q ss_pred HHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHH---HHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCC
Q 041829 155 VVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQK---ACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIG 231 (486)
Q Consensus 155 ~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~---a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g 231 (486)
.++.+....- ++.+|+++...|++... .+...|+ +++.+|.+ ++.+|+++|+++.+
T Consensus 77 ~al~~~~~~g---------d~~~vi~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~---~~~~d~~~l~~~~~------ 135 (357)
T 3lws_A 77 VALRIWSDET---------DNRTVAYHPLCHLEIHEQDGLKELHPI---ETILVGAA---DRLMTLDEIKALPD------ 135 (357)
T ss_dssp HHHHHHHHHH---------TCCEEEECTTCHHHHSSTTHHHHHSSC---EEEECSCT---TSCCCHHHHHTCCS------
T ss_pred HHHHHHhhcC---------CCcEEEecccceeeeeccchhhhccCc---EEEEecCC---CCCcCHHHHhcCcC------
Confidence 8887766531 22278888888887665 3555677 77777743 35899999998721
Q ss_pred CccEEEEEecCCccc-cccCC---hHHHHHHHHHhCCEEEeeccccchhc--cCccchhcccCCcCCCceeeecccccCC
Q 041829 232 LIPFFLCATVGTTSS-TAVDP---LLALGNIAKSNGMWFHVDAAYAGSAC--ICPEYRQYIDGVEEADSFNMNAHKWFLT 305 (486)
Q Consensus 232 ~~p~~vv~~~~~t~t-G~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~--~~~~~~~~~~~~~~aDs~~~~~hK~l~~ 305 (486)
+.+|+++.++|++ |.+.| +++|+++|++||+++|+|+||..... ......... ..+|+++.++||++++
T Consensus 136 --~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~ 210 (357)
T 3lws_A 136 --IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA---GLFDSIYISFYKGLGG 210 (357)
T ss_dssp --CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH---TTSSEEEEESSSTTCC
T ss_pred --cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH---hcCCEEEEeccccCCC
Confidence 3478888899887 88764 89999999999999999999862111 111111111 3578899999999988
Q ss_pred CCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHH
Q 041829 306 NFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKH 385 (486)
Q Consensus 306 p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~ 385 (486)
|.+ |+++. +++.+.........+ ... . .+....+.....+++. ..+.+++..+++++
T Consensus 211 ~~g-g~~~~-~~~~~~~~~~~~~~~-~~~--------------~-~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~ 267 (357)
T 3lws_A 211 IAG-AILAG-PAAFCQTARIWKRRY-GGD--------------L-ISLYPYIVSADYYYEL-----RKDRMGQYYEQAKQ 267 (357)
T ss_dssp SSC-EEEEE-CHHHHHHHHHHHHHT-TCC--------------C-SCCHHHHHHHHHHHHH-----HTTCHHHHHHHHHH
T ss_pred Cce-EEEEc-CHHHHHHHHHHHHHh-cCC--------------c-ccchHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 876 66554 544333221111000 000 0 0000001112223332 23344556778899
Q ss_pred HHHHHhcCCCeEEe-cCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeee-E-CCEeEEEEEecCC--CC
Q 041829 386 FEGLVAQDLRFEVV-TPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTV-L-SGKYILRFAVGAP--LT 460 (486)
Q Consensus 386 l~~~l~~~~~~~~~-~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~-~~~~~lRi~~~~~--~~ 460 (486)
+.+.|+++|++++. .++..+++.+++... ......++.+.|.++| +.+.+.. . .+..++|+++... ..
T Consensus 268 l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~G-i~v~~g~~~~~~~~~~r~~i~~~~~~~ 340 (357)
T 3lws_A 268 LAEQFNALPGVHTTPEVPVSNMFHLHFDGQ------AADISPKLEQVQEETG-LGFVGYLVDKDGYCSTEISVGDAYGEL 340 (357)
T ss_dssp HHHHHHTSTTEEEESSSCSSSEEEEEEESC------HHHHHHHHHHHHHHHC-EESCSCCEECSSEEEEEEEBCTTGGGS
T ss_pred HHHHHHhCCCCeeccCCCcceEEEEEecCC------hHHHHHHHHHHHHhcC-eEEecccccCCCceEEEEEecchhhhc
Confidence 99999999999984 567778888887531 1122456777788888 4444332 1 4667999998433 35
Q ss_pred CHHHHHHHHHHHHHH
Q 041829 461 EWRHVNAAWEVMQDK 475 (486)
Q Consensus 461 t~~di~~~~~~l~~~ 475 (486)
+++++++.++.|.++
T Consensus 341 ~~~~l~~al~~l~~a 355 (357)
T 3lws_A 341 DQQTRDAGFARLRQA 355 (357)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 788888888888764
No 127
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.89 E-value=8.1e-23 Score=202.77 Aligned_cols=319 Identities=15% Similarity=0.111 Sum_probs=210.5
Q ss_pred HHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhC
Q 041829 90 AGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVG 169 (486)
Q Consensus 90 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 169 (486)
+..+.+.+...+... .|..++...++|++ +++++|.+. +++++|||+|+..++.+++..
T Consensus 15 ~~~v~~a~~~~~~~~--~~~~~~~~~~l~~~----la~~~~~~~---------~~~~~sGt~al~~al~~~~~~------ 73 (367)
T 3nyt_A 15 KDKIDAGIQRVLRHG--QYILGPEVTELEDR----LADFVGAKY---------CISCANGTDALQIVQMALGVG------ 73 (367)
T ss_dssp HHHHHHHHHHHHHHC--CCSSCHHHHHHHHH----HHHHHTCSE---------EEEESCHHHHHHHHHHHTTCC------
T ss_pred CHHHHHHHHHHHhcC--CccCChHHHHHHHH----HHHHhCCCc---------EEEeCCHHHHHHHHHHHhCCC------
Confidence 334445454444332 34467777788877 788888763 799999999999988766321
Q ss_pred ccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 170 KNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 170 ~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++.|+++..+|.++..+++..|+ +++.+|++++ ++.+|+++|+++++++ +.+|+ +++++|..
T Consensus 74 ----~gd~Vi~~~~~~~~~~~~~~~~G~---~~~~~~~~~~-~~~~d~~~l~~~i~~~------~~~v~---~~~~~G~~ 136 (367)
T 3nyt_A 74 ----PGDEVITPGFTYVATAETVALLGA---KPVYVDIDPR-TYNLDPQLLEAAITPR------TKAII---PVSLYGQC 136 (367)
T ss_dssp ----TTCEEEEESSSCTHHHHHHHHTTC---EEEEECBCTT-TCSBCGGGTGGGCCTT------EEEEC---CBCGGGCC
T ss_pred ----CcCEEEECCCccHHHHHHHHHcCC---EEEEEecCCc-cCCcCHHHHHHhcCcC------CcEEE---eeCCccCh
Confidence 677899999999999999999999 9999999875 3799999999998543 33444 67799999
Q ss_pred CChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeee--cccccCCCCcceEEEEeCchHHHHHhcCC
Q 041829 250 DPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMN--AHKWFLTNFDCSALWVKDRNTLIQSLSTN 327 (486)
Q Consensus 250 d~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~--~hK~l~~p~~~g~l~~r~~~~~~~~~~~~ 327 (486)
.|+++|.++|+++|+++|+|++|+.+....... .+. ..|.++++ +||+++.+..+|+++.+++..........
T Consensus 137 ~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~----~~~-~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~ 211 (367)
T 3nyt_A 137 ADFDAINAIASKYGIPVIEDAAQSFGASYKGKR----SCN-LSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIA 211 (367)
T ss_dssp CCHHHHHHHHHHTTCCBEEECTTTTTCEETTEE----TTS-SSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHcCCEEEEECccccCCeECCee----ccC-CCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHH
Confidence 999999999999999999999997544322111 111 12877777 59999874457777776665433221111
Q ss_pred cccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC----
Q 041829 328 PEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRI---- 403 (486)
Q Consensus 328 ~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~---- 403 (486)
..... ..+.......+.+...+.+++.+.. .+.+++..++..++++++.+.|+++ ++.+...+.
T Consensus 212 ~~g~~---------~~~~~~~~g~~~~~~~~~aa~~~~~--l~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~ 279 (367)
T 3nyt_A 212 RHGQD---------RRYHHIRVGVNSRLDTLQAAILLPK--LEIFEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNIS 279 (367)
T ss_dssp BTTEE---------ETTEECSCCCBCCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEEC
T ss_pred hcCCC---------cCceeeccCcCCCccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccC-CeeccCCCCCCce
Confidence 00000 0000001112223444555555544 3556788888999999999999998 565432221
Q ss_pred -ceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeee--------EC------------CEeEEEEEecCCCCCH
Q 041829 404 -FSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTV--------LS------------GKYILRFAVGAPLTEW 462 (486)
Q Consensus 404 -~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--------~~------------~~~~lRi~~~~~~~t~ 462 (486)
...+.+.... ...+.+.|.++|...-.... +. ....+|+.+ ++.+|+
T Consensus 280 ~~~~~~~~~~~-----------~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~-~~~~t~ 347 (367)
T 3nyt_A 280 VYAQYTVRMDN-----------RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPM-HPYLDT 347 (367)
T ss_dssp CCSSEEEECSS-----------HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECC-CTTCCH
T ss_pred eeEEEEEEeCC-----------HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccC-CCCCCH
Confidence 2233333321 24567777777743211110 00 125899998 999999
Q ss_pred HHHHHHHHHHHHH
Q 041829 463 RHVNAAWEVMQDK 475 (486)
Q Consensus 463 ~di~~~~~~l~~~ 475 (486)
+||+++++.|++.
T Consensus 348 ~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 348 ASIKIICAALTNL 360 (367)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999764
No 128
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.89 E-value=1.2e-21 Score=195.93 Aligned_cols=285 Identities=14% Similarity=0.085 Sum_probs=198.7
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHH
Q 041829 110 TSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQ 189 (486)
Q Consensus 110 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 189 (486)
..|...++|+. +++++|.+. .++++|||+|+..++.++.. +++.|+++...|.+..
T Consensus 64 ~~~~~~~l~~~----la~~~g~~~---------~~~~~sGt~A~~~al~~~~~-----------~gd~Vi~~~~~y~~~~ 119 (392)
T 3qhx_A 64 GNPTRTALEAA----LAAVEDAAF---------GRAFSSGMAAADCALRAMLR-----------PGDHVVIPDDAYGGTF 119 (392)
T ss_dssp CCHHHHHHHHH----HHHHTTCSE---------EEEESSHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHH
T ss_pred CChHHHHHHHH----HHHHhCCCc---------EEEECCHHHHHHHHHHHHhC-----------CCCEEEEeCCCcchHH
Confidence 34555555555 899998763 78999999999988876532 5678999999998877
Q ss_pred HHH----HHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCE
Q 041829 190 KAC----QIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMW 265 (486)
Q Consensus 190 ~a~----~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~ 265 (486)
..+ +..|+ +++.+|.+ |+++|+++++++ +.+|++..++|++|.+.|+++|+++|+++|++
T Consensus 120 ~~~~~~~~~~g~---~~~~v~~~-------d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~ 183 (392)
T 3qhx_A 120 RLIDKVFTGWNV---EYTPVALA-------DLDAVRAAIRPT------TRLIWVETPTNPLLSIADIAGIAQLGADSSAK 183 (392)
T ss_dssp HHHHHTGGGGTC---EEEEECTT-------CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCE
T ss_pred HHHHHHHHhcCc---EEEEeCCC-------CHHHHHHhhCCC------CeEEEEECCCCCCcEEecHHHHHHHHHHcCCE
Confidence 766 55688 88888764 899999998653 46888999999999999999999999999999
Q ss_pred EEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCc--ceEEEEeCchHHHHHhcCCcccccccccccCCccC
Q 041829 266 FHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFD--CSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVD 343 (486)
Q Consensus 266 lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~--~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~ 343 (486)
+|+|++|+.+....+ . . .++|.++.++||+++.+.+ +|+++.+++...... .....
T Consensus 184 li~D~~~~~~~~~~~-~-~-----~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l-~~~~~-------------- 241 (392)
T 3qhx_A 184 VLVDNTFASPALQQP-L-S-----LGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSF-AFLQN-------------- 241 (392)
T ss_dssp EEEECTTTCTTTCCG-G-G-----GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHH-HHHHH--------------
T ss_pred EEEECCCcccccCCh-H-H-----hCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHH-HHHHH--------------
Confidence 999999986533222 1 1 1689999999999987743 788877765433221 11000
Q ss_pred CCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC-----------------ceE
Q 041829 344 YKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRI-----------------FSL 406 (486)
Q Consensus 344 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~-----------------~~~ 406 (486)
..+.....+..|++++.+ +.+..++++..++++++.+.|+++|.+..+..|. .++
T Consensus 242 ------~~g~~~~~~~~~~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~ 313 (392)
T 3qhx_A 242 ------GAGAVPGPFDAYLTMRGL--KTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGM 313 (392)
T ss_dssp ------HHCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSE
T ss_pred ------hcCCCCCHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceE
Confidence 112233456677776644 4567788889999999999999999886553222 457
Q ss_pred EEEEecCCCCCcccchHHHHHHHHHHHccCcE---------EEEeeeE-----------CCEeEEEEEecCCCCCHHHHH
Q 041829 407 VCFRLLPPHNDEDHGNKLNHKLLDDINSTGKI---------FISHTVL-----------SGKYILRFAVGAPLTEWRHVN 466 (486)
Q Consensus 407 v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~---------~~~~~~~-----------~~~~~lRi~~~~~~~t~~di~ 466 (486)
++|.+... .....++.+.+...+.. ...+... -....+|+|+ +..+++++|+
T Consensus 314 ~~~~l~~~-------~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSv-g~e~~~~~i~ 385 (392)
T 3qhx_A 314 VSVRMRAG-------RTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSV-GIEDVADLLD 385 (392)
T ss_dssp EEEEETTC-------HHHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEEC-CSSCHHHHHH
T ss_pred EEEEeCCc-------HHHHHHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEe-ccCCHHHHHH
Confidence 88888641 23345666666543311 1111100 1235799999 6667777777
Q ss_pred HHHHHH
Q 041829 467 AAWEVM 472 (486)
Q Consensus 467 ~~~~~l 472 (486)
.+.++|
T Consensus 386 ~l~~al 391 (392)
T 3qhx_A 386 DLKQAL 391 (392)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776665
No 129
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.89 E-value=4.9e-22 Score=196.66 Aligned_cols=307 Identities=13% Similarity=0.032 Sum_probs=198.7
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhH-
Q 041829 110 TSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSAL- 188 (486)
Q Consensus 110 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~- 188 (486)
.++...++.+++.+++++++|.+++. ...++|+|||+++..++.+... +++.|++....|++.
T Consensus 43 ~~~~~~~~~~~~~~~la~~~g~~~~~-----~~i~~t~g~t~a~~~~~~~l~~-----------~gd~vl~~~~~~~~~~ 106 (362)
T 2c0r_A 43 RGAVYEAVHNEAQARLLALLGNPTGY-----KVLFIQGGASTQFAMIPMNFLK-----------EGQTANYVMTGSWASK 106 (362)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTCCSSE-----EEEEESSHHHHHHHHHHHHHCC-----------TTCEEEEEECSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCc-----EEEEECCCchHHHHHHHHhcCC-----------CCCeEEEEecCcHhHH
Confidence 35667778889999999999997521 0146789999999887765432 556666665566653
Q ss_pred -HHHHHHhCCCCCCeEEEeCCC--CCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc-cCChHHHHHHHHHhCC
Q 041829 189 -QKACQIGGIHPQNFRVLKTDS--STNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA-VDPLLALGNIAKSNGM 264 (486)
Q Consensus 189 -~~a~~~~g~g~~~v~~v~~~~--~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~-id~l~~I~~ia~~~g~ 264 (486)
...++..| +++.+|++. +.+..+|.++++ +++ ++.+|++++++|+||. +.|+++| +|+
T Consensus 107 ~~~~~~~~g----~~~~v~~~~~~~~~~~~~~~~~~--i~~------~t~~v~~~~~~n~tG~~~~~l~~i------~~~ 168 (362)
T 2c0r_A 107 ALKEAKLIG----DTHVAASSEASNYMTLPKLQEIQ--LQD------NAAYLHLTSNETIEGAQFKAFPDT------GSV 168 (362)
T ss_dssp HHHHHHHHS----CEEEEEECGGGTTCSCCCGGGCC--CCT------TEEEEEEESEETTTTEECSSCCCC------TTS
T ss_pred HHHHHHHhC----CeEEEecccccccccCCCHHHcc--cCC------CcCEEEEeCCcCccceeccccccc------CCC
Confidence 34555554 467788763 111235666553 322 3578999999999999 4899887 899
Q ss_pred EEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCC
Q 041829 265 WFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDY 344 (486)
Q Consensus 265 ~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~ 344 (486)
++|||+||+.+....+ +...|+++.++||+++ |.|+|+++++++. + +.+....+++....... ...
T Consensus 169 ~vivD~a~~~~~~~~~--------~~~~d~~~~s~~K~~g-~~G~G~l~~~~~~-~-~~l~~~~~~~~~~~~~~--~~~- 234 (362)
T 2c0r_A 169 PLIGDMSSDILSRPFD--------LNQFGLVYAGAQKNLG-PSGVTVVIVREDL-V-AESPKHLPTMLRYDTYV--KNN- 234 (362)
T ss_dssp CEEEECTTTTTSSCCC--------GGGCSEEEEETTTTTC-CSSCEEEEEEGGG-S-SSCCTTSCGGGCHHHHH--HTT-
T ss_pred EEEEEChhhccCCccc--------hhHCcEEEEecccccc-CcCcEEEEEcHHH-H-hhccccCchHHhHHHHh--hcc-
Confidence 9999999986543211 2234999999999996 7789999987642 1 11211111211100000 000
Q ss_pred CCCccCCCCC-CCcHHHHHHHHHhChh-hHHHHHHHHHHHHHHHHHHHhcCCCe-EEecCC---CceEEEEEecCCCCCc
Q 041829 345 KDWQIPLGRR-FRSLKLWMVLRLYGLE-NLQGYIRNHIQLAKHFEGLVAQDLRF-EVVTPR---IFSLVCFRLLPPHNDE 418 (486)
Q Consensus 345 ~~~~~~~sr~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~l~~~~~~-~~~~~~---~~~~v~f~~~~~~~~~ 418 (486)
...++.. +....+..+++.+... +++++.++..++++++.+.|++++++ ++..++ ...+++|.+..
T Consensus 235 ---~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 306 (362)
T 2c0r_A 235 ---SLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS----- 306 (362)
T ss_dssp ---TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSC-----
T ss_pred ---CcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCC-----
Confidence 0011111 1224555666655444 78999999999999999999998546 875432 34567777642
Q ss_pred ccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 419 DHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 419 ~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
.....++.+.|.+.|. .+.+.. ....++|+++ +..++++|+++++++|+++.++
T Consensus 307 ---~~~~~~~~~~L~~~gi-~~~~g~-~~~~~iRis~-~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 307 ---EELEKEFVKASEQEGF-VGLKGH-RSVGGLRASI-YNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp ---HHHHHHHHHHHHHTTE-ESCBCC-TTTCSEEEEC-CTTSCHHHHHHHHHHHHHHHHH
T ss_pred ---cchHHHHHHHHHHCCC-eeccCC-CCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHh
Confidence 2234677888888885 333221 1124699999 7788999999999999988654
No 130
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.89 E-value=2.4e-22 Score=202.74 Aligned_cols=307 Identities=15% Similarity=0.075 Sum_probs=192.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHH--
Q 041829 112 PAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQ-- 189 (486)
Q Consensus 112 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~-- 189 (486)
.....+++.+.+++++++|.+.. -+++++||+++..++.+... +++.|+++...|.++.
T Consensus 72 ~~~~~~~~~~~~~la~~~~~~~~--------~v~~~sGs~a~~~a~~~~~~-----------~gd~v~~~~~~~~~~~~~ 132 (420)
T 3gbx_A 72 EYVDVVEQLAIDRAKELFGADYA--------NVQPHSGSQANFAVYTALLQ-----------PGDTVLGMNLAQGGHLTH 132 (420)
T ss_dssp --CHHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHHHHHHHHHHCC-----------TTCEEEEEEEC-------
T ss_pred HHHHHHHHHHHHHHHHHhCCCCc--------eeEecCcHHHHHHHHHHhcC-----------CCCEEEecchhhcceecc
Confidence 34457788888899999998764 35456679998888766533 6778888888898743
Q ss_pred -HHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEe
Q 041829 190 -KACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHV 268 (486)
Q Consensus 190 -~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhv 268 (486)
......|.+. ..+.++.+. ++.+|+++|++++++.. +.+|+++.+++ |...|+++|.++|++||+++|+
T Consensus 133 ~~~~~~~g~~~-~~~~~~~~~--~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~--~~~~~l~~l~~l~~~~~~~li~ 202 (420)
T 3gbx_A 133 GSPVNFSGKLY-NIVPYGIDE--SGKIDYDEMAKLAKEHK-----PKMIIGGFSAY--SGVVDWAKMREIADSIGAYLFV 202 (420)
T ss_dssp -----CHHHHS-EEEEEEECT--TCSCCHHHHHHHHHHHC-----CSEEEECCTTC--CSCCCHHHHHHHHHHTTCEEEE
T ss_pred chhhhhcccce-eEEeccCCc--cCCcCHHHHHHHHHhcC-----CeEEEEecCcc--CCccCHHHHHHHHHHcCCEEEE
Confidence 2222333311 344555553 46899999999998742 34677766554 5688999999999999999999
Q ss_pred eccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCc--hHHHHHhcCCcccccccccccCCccCCCC
Q 041829 269 DAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDR--NTLIQSLSTNPEFLKNKASQANMVVDYKD 346 (486)
Q Consensus 269 D~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~--~~~~~~~~~~~~yl~~~~~~~~~~~~~~~ 346 (486)
|++|+.+......+.. .+..+|+++.++||++++|.+ |+++.++. ... ..+. .+....
T Consensus 203 De~~~~~~~~~~~~~~---~~~~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~-~~~~---~~~~~~------------ 262 (420)
T 3gbx_A 203 DMAHVAGLIAAGVYPN---PVPHAHVVTTTTHKTLAGPRG-GLILAKGGDEELY-KKLN---SAVFPS------------ 262 (420)
T ss_dssp ECTTTHHHHHTTSSCC---STTTSSEEEEESSGGGCSCSC-EEEEESSCCHHHH-HHHH---HHHC--------------
T ss_pred ECCcchhceecccCCc---ccccCCEEEeecccCCCCCCc-eEEEEcCCcHHHH-HHhh---hhcCCC------------
Confidence 9998755443222111 123589999999999987764 77776651 322 2211 011000
Q ss_pred CccCCCCC-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCceEEEEEecCCCCCcccchHH
Q 041829 347 WQIPLGRR-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTP-RIFSLVCFRLLPPHNDEDHGNKL 424 (486)
Q Consensus 347 ~~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~ 424 (486)
+ ..+.. ....++..++.....++++++.++..++++++.+.|++. +++++.+ +..+++.+.+.+.. . .
T Consensus 263 -~-~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----~--~ 332 (420)
T 3gbx_A 263 -A-QGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLVDKN-----L--T 332 (420)
T ss_dssp ----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGT-----C--C
T ss_pred -C-CCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcCCCC-----C--C
Confidence 0 00100 112244445555556778889999999999999999984 8988753 45566776665321 1 1
Q ss_pred HHHHHHHHHccCcEEEEe-------eeECCEeEEEEEecCC---CCCHHHHHHHHHHHHHHHHH
Q 041829 425 NHKLLDDINSTGKIFISH-------TVLSGKYILRFAVGAP---LTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 425 ~~~l~~~l~~~g~~~~~~-------~~~~~~~~lRi~~~~~---~~t~~di~~~~~~l~~~~~~ 478 (486)
...+.+.|.+.| +.+.+ ....+...+|+++... ..++++++++++.|+++.++
T Consensus 333 ~~~~~~~l~~~g-i~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 333 GKEADAALGRAN-ITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp HHHHHHHHHHTT-EECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCC-cEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 234556666667 44444 1112234599988322 24689999999999887653
No 131
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.89 E-value=9.8e-22 Score=197.17 Aligned_cols=286 Identities=14% Similarity=0.109 Sum_probs=194.8
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHH
Q 041829 110 TSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQ 189 (486)
Q Consensus 110 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 189 (486)
..|...++|+. +++++|.+. .+++++||+|+..++.+... +++.|+++...|.++.
T Consensus 63 ~~~~~~~l~~~----la~~~g~~~---------~i~~~sG~~a~~~~l~~~~~-----------~gd~vl~~~~~~~~~~ 118 (398)
T 1gc0_A 63 SNPTLNLLEAR----MASLEGGEA---------GLALASGMGAITSTLWTLLR-----------PGDEVLLGNTLYGCTF 118 (398)
T ss_dssp CCHHHHHHHHH----HHHHHTCSE---------EEEESSHHHHHHHHHHHHCC-----------TTCEEEEESSCCSHHH
T ss_pred CChHHHHHHHH----HHHHhCCCc---------EEEECCHHHHHHHHHHHHhc-----------CCCEEEEeCCCchhHH
Confidence 34455555554 888898763 67777889999888876532 5678889999999988
Q ss_pred HHH----HHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCE
Q 041829 190 KAC----QIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMW 265 (486)
Q Consensus 190 ~a~----~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~ 265 (486)
..+ ...|+ +++.+|.+ |+++|+++++++ +.+|+++.++|++|.+.|+++|+++|+++|++
T Consensus 119 ~~~~~~~~~~g~---~~~~~~~~-------d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~ 182 (398)
T 1gc0_A 119 AFLHHGIGEFGV---KLRHVDMA-------DLQALEAAMTPA------TRVIYFESPANPNMHMADIAGVAKIARKHGAT 182 (398)
T ss_dssp HHHHHTGGGGTC---EEEEECTT-------CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHGGGTCE
T ss_pred HHHHHHHHHcCC---EEEEECCC-------CHHHHHHhcCCC------CeEEEEECCCCCCcccccHHHHHHHHHHcCCE
Confidence 776 55677 88877753 899999988642 56889999999999999999999999999999
Q ss_pred EEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCc--ceEEEEeCchHHHHHhcCCcccccccccccCCccC
Q 041829 266 FHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFD--CSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVD 343 (486)
Q Consensus 266 lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~--~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~ 343 (486)
+|+|++|+.+....+. . .++|.++.++||++++|.+ +|+++.+++. +...+.....++
T Consensus 183 li~D~~~~~~~~~~~~-~------~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~-~~~~~~~~~~~~------------ 242 (398)
T 1gc0_A 183 VVVDNTYCTPYLQRPL-E------LGADLVVHSATKYLSGHGDITAGIVVGSQAL-VDRIRLQGLKDM------------ 242 (398)
T ss_dssp EEEECTTTHHHHCCGG-G------GTCSEEEEETTTTTTCSSSCCCEEEEECHHH-HHHHHHTHHHHH------------
T ss_pred EEEECCCcccccCCch-h------hCceEEEECCccccCCCCCCeEEEEEEChHH-HHHHHHHHhhcc------------
Confidence 9999999876643321 1 1689999999999998876 5887776532 321221111110
Q ss_pred CCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEe--------------cC---CCceE
Q 041829 344 YKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVV--------------TP---RIFSL 406 (486)
Q Consensus 344 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~--------------~~---~~~~~ 406 (486)
.+.....+..|++++.+ +.+..+.++..++++.+.+.|+++|+++-+ .+ ...++
T Consensus 243 -------~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~ 313 (398)
T 1gc0_A 243 -------TGAVLSPHDAALLMRGI--KTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGM 313 (398)
T ss_dssp -------TCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTE
T ss_pred -------CCCCCCHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceE
Confidence 01112345566665544 456677788888899999999887665422 11 24678
Q ss_pred EEEEecCCCCCcccchHHHHHHHHHHHccCcEEEE------------eee------------ECC--EeEEEEEecCCCC
Q 041829 407 VCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFIS------------HTV------------LSG--KYILRFAVGAPLT 460 (486)
Q Consensus 407 v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~------------~~~------------~~~--~~~lRi~~~~~~~ 460 (486)
++|.+.. ..+...+++ .+.+..... +.. ..| ..++|+++ +..+
T Consensus 314 ~~~~l~~-------~~~~~~~~l---~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~-g~~~ 382 (398)
T 1gc0_A 314 IAFELKG-------GIGAGRRFM---NALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSV-GLED 382 (398)
T ss_dssp EEEEETT-------HHHHHHHHH---HHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEEC-CSSC
T ss_pred EEEEECC-------CHHHHHHHH---HhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEe-CcCC
Confidence 8888753 112222333 333322221 100 011 36899999 7788
Q ss_pred CHHHHHHHHHHHHHH
Q 041829 461 EWRHVNAAWEVMQDK 475 (486)
Q Consensus 461 t~~di~~~~~~l~~~ 475 (486)
++++|+.+.++|+++
T Consensus 383 ~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 383 IDDLLADVQQALKAS 397 (398)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998765
No 132
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.89 E-value=7.7e-22 Score=196.20 Aligned_cols=311 Identities=9% Similarity=0.045 Sum_probs=203.4
Q ss_pred cChhhHHHHHHHHHHH-HHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHH-HHHHHHHhCccCCCCeEEEecCCCchh
Q 041829 110 TSPAATELEMIVLDWL-AKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAA-RDKALKRVGKNSLEKLVVYASDQTHSA 187 (486)
Q Consensus 110 ~~~~~~~le~~~~~~l-a~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a-~~~~~~~~~~~~~~~~~v~~s~~~H~s 187 (486)
.+|...++|++ + ++++|... ..++++|||+|+..++.+. .. +++.|+++..+|.+
T Consensus 34 ~~~~~~~l~~~----~~a~~~g~~~--------~~v~~~sgt~al~~al~~l~~~-----------~Gd~Vi~~~~~~~~ 90 (377)
T 3ju7_A 34 YGPINQRFEQT----IMSGFFQNRG--------AVTTVANATLGLMAAIQLKKRK-----------KGKYALMPSFTFPA 90 (377)
T ss_dssp SCHHHHHHHHH----HHHHTSTTCS--------EEEEESCHHHHHHHHHHHHSCT-----------TCCEEEEESSSCTH
T ss_pred CCHHHHHHHHH----HHHHHhCCCC--------eEEEeCCHHHHHHHHHHHcCCC-----------CcCEEEECCCCcHH
Confidence 37888888888 7 88898322 3799999999998888764 22 67889999999999
Q ss_pred HHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHH-HHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEE
Q 041829 188 LQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAIS-RDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWF 266 (486)
Q Consensus 188 ~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~-~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~l 266 (486)
+..++...|+ +++.+|++++ +|.+|+++|++++. +.. ++.+|+ +++++|...|+++|.++|+ +|+++
T Consensus 91 ~~~~~~~~G~---~~~~v~~~~~-~~~~d~~~l~~~i~~~~~----~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~v 158 (377)
T 3ju7_A 91 TPLAAIWCGL---EPYFIDISID-DWYMDKTVLWDKIEELKE----EVAIVV---PYATFGSWMNLEEYEELEK-KGVPV 158 (377)
T ss_dssp HHHHHHHTTC---EEEEECBCTT-TCSBCHHHHHHHHHHHGG----GEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCB
T ss_pred HHHHHHHcCC---EEEEEecCCc-cCCcCHHHHHHHHhcCCC----CceEEE---EECCCCCccCHHHHHHHHh-cCCEE
Confidence 9999999999 9999999864 58999999999984 431 123454 4668999999999999999 99999
Q ss_pred EeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCC
Q 041829 267 HVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKD 346 (486)
Q Consensus 267 hvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~ 346 (486)
|+|+||+.+...... ..-.....++.+++++||++++ ...|+++++++....+.......-... .+..
T Consensus 159 i~D~a~a~g~~~~~~--~~g~~~~d~~~~S~~~~K~l~~-g~gG~~~~~~~~l~~~~~~~~~~g~~~---------~~~~ 226 (377)
T 3ju7_A 159 VVDAAPGFGLMNGGM--HYGQDFSGMIIYSFHATKPFGI-GEGGLIYSKNEEDIQRIKRMGNFGFDT---------NREC 226 (377)
T ss_dssp EEECTTCTTCEETTE--ETTTTCSSEEEEECBTTSSSCC-BSCEEEEESCHHHHHHHHHHTBTTBCT---------TSCB
T ss_pred EEECCCccCCeECCE--eccCCCCcEEEEECCCCCcCCC-CCcEEEEECCHHHHHHHHHHHhcCCCC---------CCce
Confidence 999999755432111 1101112345666678999987 456777777765433221111100000 0000
Q ss_pred CccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEE-ecCC----Cc-eEEEEEecCCCCCccc
Q 041829 347 WQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEV-VTPR----IF-SLVCFRLLPPHNDEDH 420 (486)
Q Consensus 347 ~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~-~~~~----~~-~~v~f~~~~~~~~~~~ 420 (486)
.......+...+.++..+.. .+.+.++.++..++++++.+.|++++++.+ +.++ .. ..+.+.+.. .
T Consensus 227 ~~~g~~~~~~~~~aa~~~~~--l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----- 298 (377)
T 3ju7_A 227 TMMGFNCKMSEYAAAIGIAT--MKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPE-E----- 298 (377)
T ss_dssp CSSCCBCCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCT-T-----
T ss_pred eeccccCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCC-h-----
Confidence 01111222344555554443 467788999999999999999999875422 1111 11 133444432 1
Q ss_pred chHHHHHHHHHHHccCcEEEEee--eE------C-------------CEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 421 GNKLNHKLLDDINSTGKIFISHT--VL------S-------------GKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 421 ~~~~~~~l~~~l~~~g~~~~~~~--~~------~-------------~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
....++.+.|.++|+..-... .. . ....+|+.+ ++.+|++|++++++.|+++..+
T Consensus 299 --~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~-~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 299 --VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPL-WEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp --SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECC-CTTCCHHHHHHHHHHHTC----
T ss_pred --hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCC-CCCCCHHHHHHHHHHHHHHHhc
Confidence 013568888888884321111 00 0 126899998 9999999999999999877654
No 133
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.89 E-value=3.7e-21 Score=190.53 Aligned_cols=313 Identities=12% Similarity=0.047 Sum_probs=205.7
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCc
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGK 170 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 170 (486)
..+.+.+...+.. ...|. .+...++++. +++++|.+.+ ..++|+|||+++..++.++ .
T Consensus 40 ~~v~~a~~~~~~~-~~~y~-~~~~~~l~~~----la~~~~~~~~-------~v~~~~g~~~al~~~~~~~-~-------- 97 (364)
T 1lc5_A 40 VSVKRALIDNLDC-IERYP-DADYFHLHQA----LARHHQVPAS-------WILAGNGETESIFTVASGL-K-------- 97 (364)
T ss_dssp HHHHHHHHHTGGG-GGSCC-CTTCHHHHHH----HHHHHTSCGG-------GEEEESSHHHHHHHHHHHH-C--------
T ss_pred HHHHHHHHHHHHH-hhcCC-CCCHHHHHHH----HHHHHCcCHH-------HEEECCCHHHHHHHHHHHc-C--------
Confidence 3345555555433 22332 2445666666 7777787654 5899999999998887665 1
Q ss_pred cCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC
Q 041829 171 NSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD 250 (486)
Q Consensus 171 ~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id 250 (486)
+ +.|++...+|.++...++..|. +++.+|.++++++.+ ++++.+++. ..+.+|+++.++|+||.+-
T Consensus 98 ---g-d~vl~~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~-l~~~~~~~~------~~~~~v~i~~p~nptG~~~ 163 (364)
T 1lc5_A 98 ---P-RRAMIVTPGFAEYGRALAQSGC---EIRRWSLREADGWQL-TDAILEALT------PDLDCLFLCTPNNPTGLLP 163 (364)
T ss_dssp ---C-SEEEEEESCCTHHHHHHHHTTC---EEEEEECCGGGTTCC-CTTHHHHCC------TTCCEEEEESSCTTTCCCC
T ss_pred ---C-CeEEEeCCCcHHHHHHHHHcCC---eEEEEeCCcccccch-hHHHHHhcc------CCCCEEEEeCCCCCCCCCC
Confidence 4 5677788899999999999999 999999875332333 343433332 1245678889999999998
Q ss_pred C---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcC
Q 041829 251 P---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLST 326 (486)
Q Consensus 251 ~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~ 326 (486)
| +++|+++|+++|+++++|++|+.+........... +....|.++.++||+++.| ..+|++++.+++........
T Consensus 164 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~ 242 (364)
T 1lc5_A 164 ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPAL-KDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQ 242 (364)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGC-TTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHh-ccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHh
Confidence 8 89999999999999999999987543111111111 1124577888999999755 35788873444433322111
Q ss_pred CcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC-hhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCce
Q 041829 327 NPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG-LENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFS 405 (486)
Q Consensus 327 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~ 405 (486)
...| ....+..+++...+. .+.+++..++..++++++.+.|+++|++++. ++..+
T Consensus 243 ~~~~-----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g~ 298 (364)
T 1lc5_A 243 QMPW-----------------------SVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRAN 298 (364)
T ss_dssp SCTT-----------------------CSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSS
T ss_pred CCCC-----------------------CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEEC-CCCCe
Confidence 1000 123344555555543 2467788888889999999999999999876 45566
Q ss_pred EEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEee-eEC--CEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 406 LVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHT-VLS--GKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 406 ~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
++.+.+... ..++.+.|.++| +.+.+. .+. +..++|+++ + +++|+++++++|+++.+++
T Consensus 299 ~~~~~~~~~----------~~~l~~~l~~~g-i~v~~g~~~~~~~~~~iRis~-~---~~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 299 YLLLRCERE----------DIDLQRRLLTQR-ILIRSCANYPGLDSRYYRVAI-R---SAAQNERLLAALRNVLTGI 360 (364)
T ss_dssp EEEEEESCT----------TCCHHHHHHTTT-EECEECTTSTTCCTTEEEEEC-C---CHHHHHHHHHHHHHHC---
T ss_pred EEEEECCCc----------HHHHHHHHHHCC-cEEeeCcccCCCCCCEEEEEe-C---CHHHHHHHHHHHHHHhhcc
Confidence 677776421 134667777777 444443 232 246899998 2 5889999999999887654
No 134
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.88 E-value=4.5e-21 Score=192.61 Aligned_cols=285 Identities=16% Similarity=0.162 Sum_probs=196.3
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHH-
Q 041829 112 PAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQK- 190 (486)
Q Consensus 112 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~- 190 (486)
|...++++. +++++|.+. .++++||++|+..++.+... +++.|+++...|.++..
T Consensus 62 ~~~~~l~~~----ia~~~g~~~---------~i~~~~g~~ai~~~~~~l~~-----------~gd~Vl~~~~~y~~~~~~ 117 (404)
T 1e5e_A 62 PTVSNLEGK----IAFLEKTEA---------CVATSSGMGAIAATVLTILK-----------AGDHLISDECLYGCTHAL 117 (404)
T ss_dssp HHHHHHHHH----HHHHHTCSE---------EEEESSHHHHHHHHHHHHCC-----------TTCEEEEESCCCHHHHHH
T ss_pred hHHHHHHHH----HHHHhCCCc---------EEEeCChHHHHHHHHHHHhC-----------CCCEEEEeCCCchhHHHH
Confidence 333355555 888888753 68888889998887765432 67788899999999888
Q ss_pred ---HHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHH-hCCEE
Q 041829 191 ---ACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKS-NGMWF 266 (486)
Q Consensus 191 ---a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~-~g~~l 266 (486)
.++..|+ +++.+|.+ |+++|++++++. +.+|+++.++|++|.+.|+++|+++|++ +|+++
T Consensus 118 ~~~~~~~~g~---~~~~v~~~-------d~~~l~~~i~~~------t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~l 181 (404)
T 1e5e_A 118 FEHALTKFGI---QVDFINTA-------IPGEVKKHMKPN------TKIVYFETPANPTLKIIDMERVCKDAHSQEGVLV 181 (404)
T ss_dssp HHTHHHHTTC---EEEEECTT-------STTHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEE
T ss_pred HHHHHHHcCC---EEEEECCC-------CHHHHHHhcCCC------CcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEE
Confidence 7888899 88888864 778898888643 4688999999999999999999999999 99999
Q ss_pred EeeccccchhccCccchhcccCCcCCCceeeecccccCCCCc--ceEEEEeCchHHHHHhcCCcccccccccccCCccCC
Q 041829 267 HVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFD--CSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDY 344 (486)
Q Consensus 267 hvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~--~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~ 344 (486)
++|++|+.+....+ . . .++|+++.++||++++|.. +|+++.++. .+.+.+.....++.
T Consensus 182 i~De~~~~~~~~~~-~-~-----~~~di~~~S~sK~~~~~g~ri~G~~~~~~~-~~~~~l~~~~~~~~------------ 241 (404)
T 1e5e_A 182 IADNTFCSPMITNP-V-D-----FGVDVVVHSATKYINGHTDVVAGLICGKAD-LLQQIRMVGIKDIT------------ 241 (404)
T ss_dssp EEECTTTCTTTCCG-G-G-----GTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHTCCCCCC------------
T ss_pred EEECCCchhhhCCc-c-c-----cCCEEEEEcCccccCCCCCCeEEEEEECHH-HHHHHHHHHHHhCC------------
Confidence 99999987654322 1 1 1689999999999998876 688887654 33312221111100
Q ss_pred CCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEE-ecC------------C----CceEE
Q 041829 345 KDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEV-VTP------------R----IFSLV 407 (486)
Q Consensus 345 ~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~-~~~------------~----~~~~v 407 (486)
+.....+..|++++.+. .+..++++..++++.+.+.+++.+.++- +.+ + ..+++
T Consensus 242 -------g~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~ 312 (404)
T 1e5e_A 242 -------GSVISPHDAWLITRGLS--TLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMI 312 (404)
T ss_dssp -------CCCCCHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEE
T ss_pred -------CCCCCHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEE
Confidence 11123456677666553 3566777778888888899988765542 211 1 26788
Q ss_pred EEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeE-------------------------CC--EeEEEEEecCCCC
Q 041829 408 CFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVL-------------------------SG--KYILRFAVGAPLT 460 (486)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-------------------------~~--~~~lRi~~~~~~~ 460 (486)
+|.+.. . ...+.+.+.+.|. ++.+..+ .| .+++|+++..
T Consensus 313 ~~~~~~-------~---~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--- 378 (404)
T 1e5e_A 313 TFILKS-------G---FEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--- 378 (404)
T ss_dssp EEEETT-------H---HHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS---
T ss_pred EEEeCC-------C---HHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC---
Confidence 887742 1 1223333444553 3222111 12 3689999932
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 041829 461 EWRHVNAAWEVMQDKASALLA 481 (486)
Q Consensus 461 t~~di~~~~~~l~~~~~~l~~ 481 (486)
+|++++++.|+++.+.+++
T Consensus 379 --e~~~~li~~l~~al~~~~~ 397 (404)
T 1e5e_A 379 --EDADELIADFKQGLDALLR 397 (404)
T ss_dssp --SCHHHHHHHHHHHHHHHHC
T ss_pred --CCHHHHHHHHHHHHHHHHH
Confidence 7899999999998877653
No 135
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.88 E-value=4.8e-21 Score=193.52 Aligned_cols=306 Identities=14% Similarity=0.097 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchh-HHHHHH
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSA-LQKACQ 193 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s-~~~a~~ 193 (486)
..+++.+.+++++++|.+.. .++++|||+|+..++.++.. +++.|+++..+|.+ +...+.
T Consensus 77 ~~~~~~a~~~~~~~~~~~~~--------~v~~~~Gs~a~~~al~~~~~-----------~gd~Vi~~~~~~~~~~~~~~~ 137 (425)
T 3ecd_A 77 DEVEALAIERVKRLFNAGHA--------NVQPHSGAQANGAVMLALAK-----------PGDTVLGMSLDAGGHLTHGAK 137 (425)
T ss_dssp CHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHHHHHHHHHHCC-----------TTCEEEEECC-----------
T ss_pred HHHHHHHHHHHHHHhCCCCc--------eeecCchHHHHHHHHHHccC-----------CCCEEEEcccccccceecchh
Confidence 35666666889999998763 45688999999888776532 67788889999987 323332
Q ss_pred --HhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeecc
Q 041829 194 --IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAA 271 (486)
Q Consensus 194 --~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A 271 (486)
..|.+. .++.++.+++ ++.+|+++|++++++.. +.+|+++.+++ |...++++|.++|++||+++|+|++
T Consensus 138 ~~~~g~~~-~~~~~~~~~~-~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~ 208 (425)
T 3ecd_A 138 PALSGKWF-NALQYGVSRD-TMLIDYDQVEALAQQHK-----PSLIIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMA 208 (425)
T ss_dssp -------C-EEEEECCCTT-TSSCCHHHHHHHHHHHC-----CSEEEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECG
T ss_pred hhhcccce-eeeecCCCcc-cCccCHHHHHHHHhhcC-----CcEEEEccccC--CCcCCHHHHHHHHHHcCCEEEEECc
Confidence 344411 3345555543 47999999999997532 34677665444 7889999999999999999999999
Q ss_pred ccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCC
Q 041829 272 YAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPL 351 (486)
Q Consensus 272 ~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 351 (486)
|+.+....+.... .+..+|+++.++||++.+|. +|+++.+++.... .+.. +.... ...
T Consensus 209 ~~~g~~~~~~~~~---~~~~~di~~~s~sK~l~g~~-~g~~~~~~~~~~~-~~~~---~~~~~--------------~~~ 266 (425)
T 3ecd_A 209 HIAGVIAAGRHAN---PVEHAHVVTSTTHKTLRGPR-GGFVLTNDEEIAK-KINS---AVFPG--------------LQG 266 (425)
T ss_dssp GGHHHHHTTSSCC---GGGTCSEEEEESSGGGCCCS-CEEEEESCHHHHH-HHHH---HHC-------------------
T ss_pred ChHhhhhcccccC---chhcCcEEEecCCcccCCCC-cEEEEeCCHHHHH-HHHh---hhCcc--------------ccC
Confidence 7655543322211 12347999999999997775 5777777554322 2111 11000 000
Q ss_pred CCC-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCceEEEEEecCCCCCcccchHHHHHHH
Q 041829 352 GRR-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTP-RIFSLVCFRLLPPHNDEDHGNKLNHKLL 429 (486)
Q Consensus 352 sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~~~l~ 429 (486)
+.. ....++++++.....++++++.++..++++++.+.|++. +++++.+ +..+++.+.+.+.. .+ ...+.
T Consensus 267 ~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~ 338 (425)
T 3ecd_A 267 GPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVDLRPKG-----LK--GAQVE 338 (425)
T ss_dssp CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGT-----CC--HHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEEeCCCC-----CC--HHHHH
Confidence 101 112344555555556788899999999999999999985 8988753 35567777765321 11 24556
Q ss_pred HHHHccCcEEEEeeeE-------CCEeEEEEEec---CCCCCHHHHHHHHHHHHHHHHHH
Q 041829 430 DDINSTGKIFISHTVL-------SGKYILRFAVG---APLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 430 ~~l~~~g~~~~~~~~~-------~~~~~lRi~~~---~~~~t~~di~~~~~~l~~~~~~l 479 (486)
+.|.+.| +.+..... ....++|+++. ....++++++++++.|+++.++.
T Consensus 339 ~~l~~~g-i~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 339 QALERAG-ITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp HHHHHTT-EECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC-CEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 6666677 44442211 12347999841 33446999999999999888765
No 136
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.88 E-value=5.4e-21 Score=190.09 Aligned_cols=317 Identities=9% Similarity=0.015 Sum_probs=209.9
Q ss_pred HHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhC
Q 041829 90 AGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVG 169 (486)
Q Consensus 90 ~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 169 (486)
+..+.+.+...+ .....|....+..++++++.+|+.+.+|.+.+ ....++|+|||+++..++.+...
T Consensus 38 ~~~v~~a~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~-----~~~i~~t~g~~~al~~~~~~~~~------- 104 (376)
T 3ezs_A 38 PKFIQDALKNHT-HSLNIYPKSAFEESLRAAQRGFFKRRFKIELK-----ENELISTLGSREVLFNFPSFVLF------- 104 (376)
T ss_dssp CHHHHHHHHTTG-GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCC-----GGGEEEESSSHHHHHHHHHHHTT-------
T ss_pred CHHHHHHHHHhh-hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-----HHHEEECcCcHHHHHHHHHHHcC-------
Confidence 345556665555 22334444455789999999999999997321 12589999999999888876543
Q ss_pred ccCCC--CeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccc
Q 041829 170 KNSLE--KLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSST 247 (486)
Q Consensus 170 ~~~~~--~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG 247 (486)
+ ++.|+++..+|.++...++..|. +++.+|.++++ .+++ +|++++.+.+ .+|+++.++|++|
T Consensus 105 ----~~~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~--~~~~-~l~~~~~~~~------~~v~~~~p~nptG 168 (376)
T 3ezs_A 105 ----DYQNPTIAYPNPFYQIYEGAAKFIKA---KSLLMPLTKEN--DFTP-SLNEKELQEV------DLVILNSPNNPTG 168 (376)
T ss_dssp ----TCSSCEEEEEESCCTHHHHHHHHTTC---EEEEEECCGGG--TSCC-CCCHHHHHHC------SEEEECSSCTTTC
T ss_pred ----CCCCCEEEEecCCcHhHHHHHHHcCC---EEEEcccCCCC--Ccch-hHHhhhccCC------CEEEEcCCCCCcC
Confidence 5 77899999999999999999999 99999998654 3454 7777776643 4778889999999
Q ss_pred ccCC---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccC-------CcCCCceeeecccccC-CCCcceEEEEeC
Q 041829 248 AVDP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDG-------VEEADSFNMNAHKWFL-TNFDCSALWVKD 316 (486)
Q Consensus 248 ~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~-------~~~aDs~~~~~hK~l~-~p~~~g~l~~r~ 316 (486)
.+-| +++|+++|++||+++++|++|+.+.... ........ ....+.+..+++|+++ ....+|+++. +
T Consensus 169 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-~ 246 (376)
T 3ezs_A 169 RTLSLEELISWVKLALKHDFILINDECYSEIYENT-PPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAG-D 246 (376)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSS-CCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEE-C
T ss_pred CCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC-CCCCHHHccccccccccCcEEEEecchhccCCccceeEEEee-C
Confidence 9966 6778888999999999999998754322 11111110 1245677889999996 4456788765 3
Q ss_pred chHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh-ChhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 041829 317 RNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY-GLENLQGYIRNHIQLAKHFEGLVAQDLR 395 (486)
Q Consensus 317 ~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~l~~~~~ 395 (486)
++... .+.....+. +.....+..+++...+ -.+.+++..++..++.+++.+.|+ +
T Consensus 247 ~~~~~-~~~~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~---~ 302 (376)
T 3ezs_A 247 SRLLE-KYKAFRAYL--------------------GYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK---N 302 (376)
T ss_dssp HHHHH-HHHHHHTTT--------------------CCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST---T
T ss_pred HHHHH-HHHHHHhhh--------------------cCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 33322 221100000 0011222333333222 134577888888889999999887 4
Q ss_pred eEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHc-cCcEEEEeeeEC----CEeEEEEEecCCCCCHHHHHHHHH
Q 041829 396 FEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINS-TGKIFISHTVLS----GKYILRFAVGAPLTEWRHVNAAWE 470 (486)
Q Consensus 396 ~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~----~~~~lRi~~~~~~~t~~di~~~~~ 470 (486)
+. .+....++.+.+. . ..++.+.|.+ .|..+.++..+. +..++|+++ . .++++++++++
T Consensus 303 ~~--~~~~~~~~~~~~~-~----------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~-~--~~~~~i~~~l~ 366 (376)
T 3ezs_A 303 TL--IYPYSFYVYLPVQ-N----------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLAL-V--YDTPLLEKPLE 366 (376)
T ss_dssp CC--CCSBSSEEEEECS-C----------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEEC-C--SCHHHHHHHHH
T ss_pred CC--CCCcceEEEEECC-C----------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEE-c--CCHHHHHHHHH
Confidence 54 2333444555553 1 1456677776 675444333222 456999998 3 38999999999
Q ss_pred HHHHHHH
Q 041829 471 VMQDKAS 477 (486)
Q Consensus 471 ~l~~~~~ 477 (486)
+|+++.+
T Consensus 367 ~l~~~l~ 373 (376)
T 3ezs_A 367 IIETYRE 373 (376)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9988764
No 137
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.88 E-value=4.1e-21 Score=196.74 Aligned_cols=354 Identities=14% Similarity=0.108 Sum_probs=204.3
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHH
Q 041829 78 NYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVL 157 (486)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al 157 (486)
.|+.|.++.+. ..+.+.+...+......|...+...++++. +++++|.+ .+++|+|||+|+..++
T Consensus 44 ~ylD~~~~~~~--~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~----la~~~~~~---------~v~~t~ggt~A~~~al 108 (467)
T 1ax4_A 44 VYIDLLTDSGT--NAMSDHQWAAMITGDEAYAGSRNYYDLKDK----AKELFNYD---------YIIPAHQGRGAENILF 108 (467)
T ss_dssp CSEECSCSSSC--CCEEHHHHHHHHTCCCCSSSCHHHHHHHHH----HHHHHCCC---------EEEEESSHHHHHHHHH
T ss_pred eeeecccCcCC--HHHHHHHHHHHhhcccccccCccHHHHHHH----HHHHcCCC---------cEEEcCCcHHHHHHHH
Confidence 36666544332 222222323332222345556666666665 77777764 3899999999999999
Q ss_pred HHHHHHHHHHhCccCCCCeE---EEecCCCc-hhHHHHHHHhCCCCCCeEEEeCCC----C----CCCccCHHHHHHHHH
Q 041829 158 LAARDKALKRVGKNSLEKLV---VYASDQTH-SALQKACQIGGIHPQNFRVLKTDS----S----TNYSLSPDSLAEAIS 225 (486)
Q Consensus 158 ~~a~~~~~~~~~~~~~~~~~---v~~s~~~H-~s~~~a~~~~g~g~~~v~~v~~~~----~----~~~~id~~~L~~~i~ 225 (486)
.++++.... +++. |+++ ..| .+...++...|. +++.++.+. + .++.+|+++|+++|+
T Consensus 109 ~~~~~~~~~-------~Gd~~~~viv~-~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~ 177 (467)
T 1ax4_A 109 PVLLKYKQK-------EGKAKNPVFIS-NFHFDTTAAHVELNGC---KAINIVTEKAFDSETYDDWKGDFDIKKLKENIA 177 (467)
T ss_dssp HHHHHHHHH-------TTCCSSCEEEE-SSCCHHHHHHHHHTTC---EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHH
T ss_pred HHHHHhhcc-------CCCccceEEEe-ccccchhhHHHhccCC---ceecccccccccccccCCcccccCHHHHHHHHH
Confidence 887653211 2333 5556 566 455667888888 777665431 1 135799999999998
Q ss_pred HHHhCCCccEEEEEecCCccc-ccc---CChHHHHHHHHHhCCEEEeeccccc-hhccCc----cchhc-ccCC-----c
Q 041829 226 RDLTIGLIPFFLCATVGTTSS-TAV---DPLLALGNIAKSNGMWFHVDAAYAG-SACICP----EYRQY-IDGV-----E 290 (486)
Q Consensus 226 ~~~~~g~~p~~vv~~~~~t~t-G~i---d~l~~I~~ia~~~g~~lhvD~A~g~-~~~~~~----~~~~~-~~~~-----~ 290 (486)
+.. ..++.+|+++.++|++ |.+ +++++|+++|++||+|+|+|++++. +..+.. .+... +..+ .
T Consensus 178 ~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (467)
T 1ax4_A 178 QHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYK 255 (467)
T ss_dssp HHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGG
T ss_pred hcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhcc
Confidence 642 0125688888899999 765 5688999999999999999998654 111100 00000 0001 2
Q ss_pred CCCceeeecccccCCCCcceEEEEeCc-hHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcH-HHHHHHHHhC
Q 041829 291 EADSFNMNAHKWFLTNFDCSALWVKDR-NTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSL-KLWMVLRLYG 368 (486)
Q Consensus 291 ~aDs~~~~~hK~l~~p~~~g~l~~r~~-~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l-~~~~~l~~~g 368 (486)
.+|++++++||+++.|.| |+++.+++ +.+.........+ ... .. ..+.....+ ++..+++..-
T Consensus 256 ~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~--~~~---------~~---~~~~~~~~~~a~~~~l~~~~ 320 (467)
T 1ax4_A 256 YADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPM--EGF---------VT---YGGLAGRDMAAMVQGLEEGT 320 (467)
T ss_dssp GCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHH--TCS---------TT---TTTCCHHHHHHHHHHHHHTT
T ss_pred ccceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhcccc--ccc---------cc---cCCccchHHHHHHHHHHHhh
Confidence 578999999999987743 56666645 4433221111111 000 00 001111111 1112333321
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHH-HccCcEEEEe-eeE-
Q 041829 369 LENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDI-NSTGKIFISH-TVL- 445 (486)
Q Consensus 369 ~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~-~~~- 445 (486)
+ ++.+++..++++++.+.|++ ++++++.+.....+.+.................++.+.| .+.| +.+.+ ...
T Consensus 321 -~--~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-v~v~~~g~~~ 395 (467)
T 1ax4_A 321 -E--EEYLHYRIGQVKYLGDRLRE-AGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESG-VRAVEIGSFL 395 (467)
T ss_dssp -C--HHHHHHHHHHHHHHHHHHHH-TTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHC-EECEEESHHH
T ss_pred -h--hhHHHHHHHHHHHHHHHHHh-CCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcC-ceeeecCccc
Confidence 1 23445555778889999988 588776555455555552110000000111235677777 6677 44443 211
Q ss_pred ------CC------EeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 446 ------SG------KYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 446 ------~~------~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
.| ..++|+++....+|++|+++++++|+++.+++
T Consensus 396 ~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 396 LGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 441 (467)
T ss_dssp HCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred cccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhh
Confidence 01 36999999434589999999999999887764
No 138
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.88 E-value=1.8e-22 Score=199.51 Aligned_cols=330 Identities=15% Similarity=0.035 Sum_probs=210.4
Q ss_pred CCHHHHHHHHHHHhcCc----Ccccccc---ChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCch-hHHHHHHHH
Q 041829 87 SSVAGFLGEMLSAGLNI----VGFSWIT---SPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTA-SEAVLVVLL 158 (486)
Q Consensus 87 ~~~~~~~~~~l~~~~n~----~~~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~gg-t~a~~~al~ 158 (486)
+.++..+.+.+...+.. ....|.. ++...++.+++.+++++++|.+.. ...++|+|+ |+++..++.
T Consensus 12 ~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~------~~v~~~~g~gt~al~~~~~ 85 (360)
T 1w23_A 12 SALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPND------YQILFLQGGASLQFTMLPM 85 (360)
T ss_dssp CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT------EEEEEESSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC------ceEEEECCcchHHHHHHHH
Confidence 34445555556555532 1222322 677777888899999999998631 147888887 898877765
Q ss_pred HHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHH-HHHHHHhCCCccEEE
Q 041829 159 AARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAE-AISRDLTIGLIPFFL 237 (486)
Q Consensus 159 ~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~-~i~~~~~~g~~p~~v 237 (486)
..... +.++++|+++...|++... ++.+ | +++.+|++++ ++.+|+++|++ ++++ ++.+|
T Consensus 86 ~l~~~--------~~~g~~vi~~~~~~~~~~~-~~~~--g--~~~~v~~~~~-~~~~d~~~l~~~~i~~------~~k~v 145 (360)
T 1w23_A 86 NLLTK--------GTIGNYVLTGSWSEKALKE-AKLL--G--ETHIAASTKA-NSYQSIPDFSEFQLNE------NDAYL 145 (360)
T ss_dssp HHCCT--------TCEEEEEECSHHHHHHHHH-HHTT--S--EEEEEEECGG-GTSCSCCCGGGCCCCT------TEEEE
T ss_pred HhcCC--------CCcccEEEecchhHHHHHH-HHHh--C--CeEEeecccc-cCcCCccchHhhccCC------CCCEE
Confidence 43321 1145678888878877433 3433 4 5788998752 23689999988 7743 25688
Q ss_pred EEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCc
Q 041829 238 CATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDR 317 (486)
Q Consensus 238 v~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~ 317 (486)
++++++|+||.+-| +|++++|+++++|++|+.+....+ +...|+++.++||+++ |.|+|+++++++
T Consensus 146 ~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~~~~--------~~~~di~~~s~sK~~~-~~G~G~~~~~~~ 211 (360)
T 1w23_A 146 HITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSRPLK--------VNQFGMIYAGAQKNLG-PSGVTVVIVKKD 211 (360)
T ss_dssp EEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSSCCC--------GGGCSEEEEETTTTTS-CTTCEEEEEEHH
T ss_pred EEeCCCCCcceecc-----cccccCCceEEEechhhcCCCCcC--------cccCCEEEEEcccccC-CCCcEEEEEcHH
Confidence 88999999999855 333489999999999986543221 1123899999999887 668999988753
Q ss_pred hHHHHHhcC-CcccccccccccCCccCCCCCccCCCC-C-CCcHHHHHHHHHhChh-hHHHHHHHHHHHHHHHHHHHhcC
Q 041829 318 NTLIQSLST-NPEFLKNKASQANMVVDYKDWQIPLGR-R-FRSLKLWMVLRLYGLE-NLQGYIRNHIQLAKHFEGLVAQD 393 (486)
Q Consensus 318 ~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~sr-~-~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~l~~~ 393 (486)
. + +.+.. .+.++...... . . ....+. . .....+..+++.+... +++++.++..++++++.+.|+++
T Consensus 212 ~-~-~~~~~~~~~~~~~~~~~-----~-~--~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 281 (360)
T 1w23_A 212 L-L-NTKVEQVPTMLQYATHI-----K-S--DSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDES 281 (360)
T ss_dssp H-H-CSCCTTCCGGGCHHHHH-----H-T--TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred H-H-hhcccCCcchhhhhhhh-----h-c--cCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 2 21211 11111000000 0 0 001111 1 1123445556555444 78889999999999999999998
Q ss_pred CCe-EEecCC--Cce-EEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHH
Q 041829 394 LRF-EVVTPR--IFS-LVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAW 469 (486)
Q Consensus 394 ~~~-~~~~~~--~~~-~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~ 469 (486)
+++ ....++ ..+ +++|++.. .....++.+.|.+.|..+ .+... ...++|+++ +..++++|+++++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~gi~~-~~~~~-~~~~iRis~-~~~~~~~~i~~~~ 350 (360)
T 1w23_A 282 NGFYVGHAEKGSRSLMNVTFNLRN--------EELNQQFLAKAKEQGFVG-LNGHR-SVGGCRASI-YNAVPIDACIALR 350 (360)
T ss_dssp TTSSEESSCGGGBCSSEEEEECSS--------HHHHHHHHHHHHHTTEES-CBCCT-TTCSEEEEC-CTTSCHHHHHHHH
T ss_pred cCcccccCCchhccCcEEEEEcCC--------CccHHHHHHHHHHCCeee-ecCCC-CCCeEEEEe-cCCCCHHHHHHHH
Confidence 765 654222 234 77777642 123356777787788433 32211 135899999 7778999999999
Q ss_pred HHHHHHHH
Q 041829 470 EVMQDKAS 477 (486)
Q Consensus 470 ~~l~~~~~ 477 (486)
++|+++.+
T Consensus 351 ~~l~~~~~ 358 (360)
T 1w23_A 351 ELMIQFKE 358 (360)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
No 139
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.88 E-value=4.5e-20 Score=188.46 Aligned_cols=319 Identities=14% Similarity=0.109 Sum_probs=200.6
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCc-
Q 041829 107 SWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTH- 185 (486)
Q Consensus 107 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H- 185 (486)
.|..++...+++++ +++++|.+. .++|+|||+|+..++.++.. +++ +++..+|
T Consensus 70 ~y~~~~~~~~l~~~----la~~~~~~~---------~~~~~~gt~a~~~al~~l~~-----------~gd--i~~~~~~~ 123 (456)
T 2ez2_A 70 AYAGSENFYHLERT----VQELFGFKH---------IVPTHQGRGAENLLSQLAIK-----------PGQ--YVAGNMYF 123 (456)
T ss_dssp CSSSCHHHHHHHHH----HHHHHCCSE---------EEEESSHHHHHHHHHHHHCC-----------TTC--EEEESSCC
T ss_pred hcccChhHHHHHHH----HHHHhCCCc---------EEEeCCcHHHHHHHHHHhCC-----------CCC--Eecccccc
Confidence 45567777788777 777787653 89999999999988876532 455 4566677
Q ss_pred hhHHHHHHHhCCCCCCeEEEeCCCC----C----CCccCHHHHHHHHHHHHhCCCccEEEEEecCCc-cccccCC---hH
Q 041829 186 SALQKACQIGGIHPQNFRVLKTDSS----T----NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTT-SSTAVDP---LL 253 (486)
Q Consensus 186 ~s~~~a~~~~g~g~~~v~~v~~~~~----~----~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t-~tG~id~---l~ 253 (486)
.++..++...|. +++.+|++++ . ++.+|+++|+++|++.++ ..+.+|+++.++| ++|.+-| ++
T Consensus 124 ~~~~~~~~~~G~---~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~--~~~~~v~l~~p~n~ptG~~~~~~~l~ 198 (456)
T 2ez2_A 124 TTTRYHQEKNGA---VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA--ENIAYICLAVTVNLAGGQPVSMANMR 198 (456)
T ss_dssp HHHHHHHHHTTC---EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHH
T ss_pred chhHHHHHHcCC---EEEEecccccccccccccccCCCCHHHHHHHHHhccc--cceeEEEEeccCCCCCCccCCHHHHH
Confidence 888889999999 9999988732 1 268999999999987541 1245788887877 9998866 99
Q ss_pred HHHHHHHHhCCEEEeeccccch---------hccCccc-hhcc--cCCcCCCceeeecccccCCCCcceEEEEeCchHHH
Q 041829 254 ALGNIAKSNGMWFHVDAAYAGS---------ACICPEY-RQYI--DGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLI 321 (486)
Q Consensus 254 ~I~~ia~~~g~~lhvD~A~g~~---------~~~~~~~-~~~~--~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~ 321 (486)
+|+++|++||+++|+|++|+.+ ..+.... .... .+ ...|.+++++||+++.| .+|+++.++++...
T Consensus 199 ~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~ 276 (456)
T 2ez2_A 199 AVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMF-SYADGCTMSGKKDCLVN-IGGFLCMNDDEMFS 276 (456)
T ss_dssp HHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHH-TTCSEEEEETTTTTCCS-SCEEEEESCHHHHH
T ss_pred HHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhc-ccCCEEEEeCcccCCCC-ceeEEEECCHHHHH
Confidence 9999999999999999999763 1111110 0000 00 24688888899998755 46777775655433
Q ss_pred HHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhH-HHHHHHHHHHHHHHHHHHhcCCCeEEec
Q 041829 322 QSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENL-QGYIRNHIQLAKHFEGLVAQDLRFEVVT 400 (486)
Q Consensus 322 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~-~~~~~~~~~~a~~l~~~l~~~~~~~~~~ 400 (486)
........+. .. ....+.....+.+ +++... +.+ ++..++..++++++.+.|++. +++++.
T Consensus 277 ~~~~~~~~~~-~~-------------~~~~~~~~~~~~a-~a~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 338 (456)
T 2ez2_A 277 SAKELVVVYE-GM-------------PSYGGLAGRDMEA-MAIGLR--EAMQYEYIEHRVKQVRYLGDKLKAA-GVPIVE 338 (456)
T ss_dssp HHHHHHHHHT-CC-------------TTTTTCCHHHHHH-HHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCS
T ss_pred HHHHHHhhcc-Cc-------------ccccCcchhHHHH-HHHHHH--HHhHHHHHHHHHHHHHHHHHHHhcC-CCcccc
Confidence 2211111110 00 0001111111111 011111 223 466677788889999999885 787665
Q ss_pred CCCceEEEEEecC--CCCCcccchHH-HHHHHHHH-HccCcEEEEeee-------------ECCEeEEEEEecCCCCCHH
Q 041829 401 PRIFSLVCFRLLP--PHNDEDHGNKL-NHKLLDDI-NSTGKIFISHTV-------------LSGKYILRFAVGAPLTEWR 463 (486)
Q Consensus 401 ~~~~~~v~f~~~~--~~~~~~~~~~~-~~~l~~~l-~~~g~~~~~~~~-------------~~~~~~lRi~~~~~~~t~~ 463 (486)
+.....+.+.+.. .+.+ ..++ ...+.++| .+.|...+.... ..+..++|+++....++++
T Consensus 339 p~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e 415 (456)
T 2ez2_A 339 PVGGHAVFLDARRFCEHLT---QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYA 415 (456)
T ss_dssp SCCSSEEEEEHHHHTTTSC---GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHH
T ss_pred CCCceEEEEEhHHhcCCCC---hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHH
Confidence 5444555555421 1111 1222 34556666 456644333221 1123689999933237999
Q ss_pred HHHHHHHHHHHHHHHH
Q 041829 464 HVNAAWEVMQDKASAL 479 (486)
Q Consensus 464 di~~~~~~l~~~~~~l 479 (486)
|+++++++|+++.++.
T Consensus 416 ~i~~~~~~l~~~l~~~ 431 (456)
T 2ez2_A 416 HMDVVADGIIKLYQHK 431 (456)
T ss_dssp HHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999987653
No 140
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.88 E-value=2.7e-21 Score=194.54 Aligned_cols=337 Identities=11% Similarity=0.018 Sum_probs=217.5
Q ss_pred HHHHHHHHHHhcCcC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHh
Q 041829 90 AGFLGEMLSAGLNIV-GFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRV 168 (486)
Q Consensus 90 ~~~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 168 (486)
+..+.+.+...+... ...|....+..++++++.+|+.+.+|.+.+. ....++|+|||+++..++.+...
T Consensus 38 ~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~----~~~i~~~~g~~~a~~~~~~~~~~------ 107 (410)
T 3e2y_A 38 PSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDP----NEEILVAVGAYGSLFNSIQGLVD------ 107 (410)
T ss_dssp CHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCT----TTSEEEESHHHHHHHHHHHHHCC------
T ss_pred CHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCC----CCCEEEeCCcHHHHHHHHHHhcC------
Confidence 344555555555432 2344444557899999999999988875320 02589999999999888876533
Q ss_pred CccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCC---------CCCCccCHHHHHHHHHHHHhCCCccEEEEE
Q 041829 169 GKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDS---------STNYSLSPDSLAEAISRDLTIGLIPFFLCA 239 (486)
Q Consensus 169 ~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~---------~~~~~id~~~L~~~i~~~~~~g~~p~~vv~ 239 (486)
+++.|+++...|.++...++..|. +++.+|+++ ..++.+|+++|++++++. +.+|++
T Consensus 108 -----~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~------~~~v~~ 173 (410)
T 3e2y_A 108 -----PGDEVIIMVPFYDCYEPMVRMAGA---VPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSK------TKAIIL 173 (410)
T ss_dssp -----TTCEEEEEESCCTTHHHHHHHTTC---EEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTT------EEEEEE
T ss_pred -----CCCEEEEeCCCchhhHHHHHHcCC---EEEEEeccccccccccccccCCcCCHHHHHhhcCCC------ceEEEE
Confidence 567788899999999999999999 999999863 124679999999988542 567888
Q ss_pred ecCCcccccc---CChHHHHHHHHHhCCEEEeeccccchhccCccchhcc--cCCcCCCceeeecccccC-CCCcceEEE
Q 041829 240 TVGTTSSTAV---DPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYI--DGVEEADSFNMNAHKWFL-TNFDCSALW 313 (486)
Q Consensus 240 ~~~~t~tG~i---d~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~--~~~~~aDs~~~~~hK~l~-~p~~~g~l~ 313 (486)
+.++|++|.+ +++++|+++|++||+++++|++|+.+........... ......+.+..+++|.++ ....+|+++
T Consensus 174 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~ 253 (410)
T 3e2y_A 174 NTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSI 253 (410)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEE
T ss_pred eCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEE
Confidence 8999999999 6899999999999999999999986543211111111 111123466778899997 445678877
Q ss_pred EeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHH------hChhhHHHHHHHHHHHHHHHH
Q 041829 314 VKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRL------YGLENLQGYIRNHIQLAKHFE 387 (486)
Q Consensus 314 ~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~------~g~~g~~~~~~~~~~~a~~l~ 387 (486)
.++. .+.. +....... ...........+..+++. ...+.++++.++..++++++.
T Consensus 254 ~~~~-~~~~-~~~~~~~~-----------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 314 (410)
T 3e2y_A 254 GPAH-LIKH-LQTVQQNS-----------------FYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMV 314 (410)
T ss_dssp CCHH-HHHH-HHHHHHTT-----------------TCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred ECHH-HHHH-HHHHHHhh-----------------ccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 6543 2222 11100000 000001111223333332 135667888889999999999
Q ss_pred HHHhcCCCeEEecCCCceEEEEEecCCC--CCccc-chHHHHHHHHHHH-ccCcEEEEe-eeEC-------CEeEEEEEe
Q 041829 388 GLVAQDLRFEVVTPRIFSLVCFRLLPPH--NDEDH-GNKLNHKLLDDIN-STGKIFISH-TVLS-------GKYILRFAV 455 (486)
Q Consensus 388 ~~l~~~~~~~~~~~~~~~~v~f~~~~~~--~~~~~-~~~~~~~l~~~l~-~~g~~~~~~-~~~~-------~~~~lRi~~ 455 (486)
+.|+++ ++++..+....++.+.+.... .+... ......++..++. +.| +.+.+ ..+. +.+++|+++
T Consensus 315 ~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g-v~v~~g~~f~~~~~~~~~~~~iRis~ 392 (410)
T 3e2y_A 315 RLLNSV-GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKK-LTAIPVSAFCDSKSKPHFEKLVRFCF 392 (410)
T ss_dssp HHHHTT-TCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHS-EECEEGGGGSCTTTHHHHTTEEEEEC
T ss_pred HHHHHC-CCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcC-EEEeCchhhCCCCCCCCCCCEEEEEE
Confidence 999998 898775554445555554211 00000 0001134555554 456 55444 3332 246899998
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 041829 456 GAPLTEWRHVNAAWEVMQD 474 (486)
Q Consensus 456 ~~~~~t~~di~~~~~~l~~ 474 (486)
.. ++++|++++++|++
T Consensus 393 -~~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 393 -IK--KDSTLDAAEEIFRA 408 (410)
T ss_dssp -CC--CHHHHHHHHHHHHT
T ss_pred -cC--CHHHHHHHHHHHHh
Confidence 33 99999999999875
No 141
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.88 E-value=3.4e-21 Score=190.51 Aligned_cols=286 Identities=10% Similarity=0.087 Sum_probs=195.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHH
Q 041829 113 AATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKAC 192 (486)
Q Consensus 113 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~ 192 (486)
...+++++ +++++|.+.+ ..++|+|||+++..++.+... +++.|+++..+|.++...+
T Consensus 66 ~~~~lr~~----la~~~g~~~~-------~i~~t~g~~~al~~~~~~l~~-----------~gd~Vl~~~p~~~~~~~~~ 123 (360)
T 3hdo_A 66 SSQKLREV----AGELYGFDPS-------WIIMANGSDEVLNNLIRAFAA-----------EGEEIGYVHPSYSYYGTLA 123 (360)
T ss_dssp SCHHHHHH----HHHHHTCCGG-------GEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESSSCTHHHHHH
T ss_pred chHHHHHH----HHHHhCcCcc-------eEEEcCCHHHHHHHHHHHHhC-----------CCCEEEEcCCChHHHHHHH
Confidence 34555555 7888887654 589999999999888876533 5678889999999999999
Q ss_pred HHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccc
Q 041829 193 QIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAY 272 (486)
Q Consensus 193 ~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~ 272 (486)
+..|. +++.+|.+.+ +.+ +++++++ .+.+|+++.++|++|.+.|+++|.++|+++|+++++|++|
T Consensus 124 ~~~g~---~~~~v~~~~~--~~~--~~l~~~~--------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~ 188 (360)
T 3hdo_A 124 EVQGA---RVRTFGLTGD--FRI--AGFPERY--------EGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETY 188 (360)
T ss_dssp HHHTC---EEEEECBCTT--SSB--TTCCSSB--------CSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTT
T ss_pred HHCCC---EEEEeeCCCC--CCH--HHHHhhc--------CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECCh
Confidence 99999 9999998753 455 4443322 1347888999999999999999999999999999999999
Q ss_pred cchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCC
Q 041829 273 AGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPL 351 (486)
Q Consensus 273 g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 351 (486)
+.+... ....... ....+.++.+++|+++.| ..+|+++. +++...........|
T Consensus 189 ~~~~~~--~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~--------------------- 243 (360)
T 3hdo_A 189 AEFAES--NALELVR-RHENVVVTRTLSKSYSLAGMRIGLAIA-RPEVIAALDKIRDHY--------------------- 243 (360)
T ss_dssp GGGSSC--CCTHHHH-HCSSEEEEEESTTTTSCTTSCCEEEEC-CHHHHHHHHHHSCSC---------------------
T ss_pred HhhCCc--chhHHhc-cCCCEEEEecchHhhcCCccceeeEee-CHHHHHHHHHhCCCC---------------------
Confidence 864211 1111111 113346678999998644 56788776 443332211111000
Q ss_pred CCCCCcHHHHHHHHHh-ChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHH
Q 041829 352 GRRFRSLKLWMVLRLY-GLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLD 430 (486)
Q Consensus 352 sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~ 430 (486)
....+..+++...+ ..+.++++.++..++++++.+.|+++ ++++. ++..+++.+.+... + ..++.+
T Consensus 244 --~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~-------~--~~~l~~ 310 (360)
T 3hdo_A 244 --NLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI-GYDVI-PSQGNYLFATPPDR-------D--GKRVYD 310 (360)
T ss_dssp --CSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECTTC-------C--HHHHHH
T ss_pred --CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEc-CCCccEEEEECCCC-------C--HHHHHH
Confidence 01223333333332 24567888899999999999999998 88875 55556666665421 1 246777
Q ss_pred HHHccCcEEEEeee-ECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 431 DINSTGKIFISHTV-LSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 431 ~l~~~g~~~~~~~~-~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
.|.++| +.+.+.. ..+..++|+++ + +++|+++++++|+++.+.
T Consensus 311 ~l~~~g-i~v~~~~~~~~~~~iRis~-~---~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 311 GLYARK-VLVRHFSDPLLAHGMRISI-G---TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp HHHHTT-EECBCCCSTTTTTSEEEEC-C---CHHHHHHHHHHHHHHHC-
T ss_pred HHHHCC-EEEEECCCCCCCCEEEEEc-C---CHHHHHHHHHHHHHHhcc
Confidence 777777 4554432 22346899998 3 899999999999988653
No 142
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.88 E-value=1.8e-20 Score=187.08 Aligned_cols=283 Identities=14% Similarity=0.147 Sum_probs=193.5
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHH
Q 041829 111 SPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQK 190 (486)
Q Consensus 111 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 190 (486)
.+...++++. +++++|.+. .+++++||+|+..++.++.. +++.|+++...|.++..
T Consensus 51 ~~~~~~l~~~----la~~~~~~~---------~i~~~sGt~a~~~~~~~~~~-----------~g~~vl~~~~~~~~~~~ 106 (386)
T 1cs1_A 51 NPTRDVVQRA----LAELEGGAG---------AVLTNTGMSAIHLVTTVFLK-----------PGDLLVAPHDCYGGSYR 106 (386)
T ss_dssp CHHHHHHHHH----HHHHHTCSE---------EEEESSHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHHH
T ss_pred CccHHHHHHH----HHHHhCCCc---------EEEeCCHHHHHHHHHHHHhC-----------CCCEEEEecCCcHhHHH
Confidence 3555556655 788888763 45556669999888876532 56778889999988665
Q ss_pred H----HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEE
Q 041829 191 A----CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWF 266 (486)
Q Consensus 191 a----~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~l 266 (486)
. ++..|+ +++.+|.+ |+++|+++++++ +.+|+++.++|++|.+.|+++|.++|+++|+++
T Consensus 107 ~~~~~~~~~g~---~~~~~~~~-------d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~l 170 (386)
T 1cs1_A 107 LFDSLAKRGCY---RVLFVDQG-------DEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICHLAREVGAVS 170 (386)
T ss_dssp HHHHHHTTTSC---EEEEECTT-------CHHHHHHHHHTC------CSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHhcCC---EEEEeCCC-------CHHHHHHhhccC------CcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEE
Confidence 4 355677 88888753 899999999743 457888999999999999999999999999999
Q ss_pred EeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcc--eEEEEeCchHHHHHhcCCcccccccccccCCccCC
Q 041829 267 HVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDC--SALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDY 344 (486)
Q Consensus 267 hvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~--g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~ 344 (486)
|+|++|+++....+ .. .+.|.++.++||++++|.+. |+++.++++.... +.. +...
T Consensus 171 i~De~~~~~~~~~~-~~------~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~-l~~---~~~~----------- 228 (386)
T 1cs1_A 171 VVDNTFLSPALQNP-LA------LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTE-LAW---WANN----------- 228 (386)
T ss_dssp EEECTTTCTTTCCG-GG------GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHH-HHH---HHHH-----------
T ss_pred EEECCCcccccCCc-cc------cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHH-HHH---HHHh-----------
Confidence 99999987754322 11 16899999999999988763 8888876443322 111 0000
Q ss_pred CCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cC----------------CCceEE
Q 041829 345 KDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVV-TP----------------RIFSLV 407 (486)
Q Consensus 345 ~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~-~~----------------~~~~~v 407 (486)
.+.....+..|++++.+ +.+.++.++..++++++.+.|++++.++-. .+ ...+++
T Consensus 229 ------~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 300 (386)
T 1cs1_A 229 ------IGVTGGAFDSYLLLRGL--RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAML 300 (386)
T ss_dssp ------HTCBCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEE
T ss_pred ------cCCCCCHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEE
Confidence 00011233445544433 345667778888899999999988776533 11 125688
Q ss_pred EEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeEC-------------------------C--EeEEEEEecCCCC
Q 041829 408 CFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLS-------------------------G--KYILRFAVGAPLT 460 (486)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-------------------------~--~~~lRi~~~~~~~ 460 (486)
+|.+.. . ...+.+.|.+.|.+ +.+..+. | ..++|+++ ...+
T Consensus 301 ~~~~~~--------~--~~~~~~~l~~~gi~-~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~-~~~~ 368 (386)
T 1cs1_A 301 SFELDG--------D--EQTLRRFLGGLSLF-TLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRIST-GIED 368 (386)
T ss_dssp EEEESS--------C--HHHHHHHHHTCSSS-EEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEEC-CSSC
T ss_pred EEEECC--------C--HHHHHHHHHhCCcc-eEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEE-ccCC
Confidence 888753 1 23455666666743 3321110 1 36899999 6688
Q ss_pred CHHHHHHHHHHHHHH
Q 041829 461 EWRHVNAAWEVMQDK 475 (486)
Q Consensus 461 t~~di~~~~~~l~~~ 475 (486)
++++|+.+.++|+++
T Consensus 369 ~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 369 GEDLIADLENGFRAA 383 (386)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 888898888888765
No 143
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.87 E-value=8.4e-21 Score=192.33 Aligned_cols=314 Identities=11% Similarity=0.043 Sum_probs=209.9
Q ss_pred ccccChhhHHHHHHHHHHHHHHc-CCCCCCcCCCCCC---eEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecC
Q 041829 107 SWITSPAATELEMIVLDWLAKLL-KLPEDFLSSGQGG---GVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASD 182 (486)
Q Consensus 107 ~~~~~~~~~~le~~~~~~la~l~-g~~~~~~~~~~~~---~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~ 182 (486)
.|....+..++++.+.+++.+.. +.+.+ . .++|+|||+++..++.+..+ +++.|+++.
T Consensus 83 ~y~~~~g~~~lr~~ia~~~~~~~~~~~~~-------~~~~i~~t~g~~~al~~~~~~l~~-----------~gd~Vl~~~ 144 (430)
T 2x5f_A 83 PYAPPQGIEELRDLWQQKMLRDNPELSID-------NMSRPIVTNALTHGLSLVGDLFVN-----------QDDTILLPE 144 (430)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHCTTCCGG-------GBCCCEEESHHHHHHHHHHHHHCC-----------TTCEEEEES
T ss_pred ccCCCCCCHHHHHHHHHHHhccCcccCCC-------ccceEEEcCCchHHHHHHHHHHhC-----------CCCEEEEcC
Confidence 44444467889999888777664 44332 5 79999999999888876533 567888899
Q ss_pred CCchhHHHHHHH-hCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC---hHHHHHH
Q 041829 183 QTHSALQKACQI-GGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP---LLALGNI 258 (486)
Q Consensus 183 ~~H~s~~~a~~~-~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~---l~~I~~i 258 (486)
.+|.++...++. .|. +++.+|+++.+ +.+|+++|++++++. +..+.+|+++.++|+||.+-| +++|+++
T Consensus 145 p~y~~~~~~~~~~~g~---~~~~~~~~~~~-~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~ 217 (430)
T 2x5f_A 145 HNWGNYKLVFNTRNGA---NLQTYPIFDKD-GHYTTDSLVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEVTTIVEA 217 (430)
T ss_dssp SCCTHHHHHHTTTTCC---EEEEECCBCTT-SCBCSHHHHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHHHHHHHH
T ss_pred CcCccHHHHHHHhcCC---eEEEEeccCcc-CCcCHHHHHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHH
Confidence 999999999998 999 99999987643 789999999999752 223567888999999999988 8999999
Q ss_pred HHH-----hCCEEEeeccccchhccCccchh---cccCCcCC---CceeeecccccCCC-CcceEEEE--eCchHHHHHh
Q 041829 259 AKS-----NGMWFHVDAAYAGSACICPEYRQ---YIDGVEEA---DSFNMNAHKWFLTN-FDCSALWV--KDRNTLIQSL 324 (486)
Q Consensus 259 a~~-----~g~~lhvD~A~g~~~~~~~~~~~---~~~~~~~a---Ds~~~~~hK~l~~p-~~~g~l~~--r~~~~~~~~~ 324 (486)
|++ +|+++++|++|+.+......+.. .+.+.... +.+..++||+++.| ..+|++++ +++.......
T Consensus 218 ~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~ 297 (430)
T 2x5f_A 218 IKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLE 297 (430)
T ss_dssp HHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHH
T ss_pred HHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHH
Confidence 999 99999999999875432111111 11122233 46678899999755 34788888 2443332211
Q ss_pred cCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC-----hhhHHHHHHHHHHHHHHHHHHHh----cCCC
Q 041829 325 STNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG-----LENLQGYIRNHIQLAKHFEGLVA----QDLR 395 (486)
Q Consensus 325 ~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g-----~~g~~~~~~~~~~~a~~l~~~l~----~~~~ 395 (486)
......... .......+..+++...+. .+.++++.++..++++++.+.|+ +. +
T Consensus 298 ~~~~~~~~~-----------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g 359 (430)
T 2x5f_A 298 AKVKGLIRS-----------------NISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHS-H 359 (430)
T ss_dssp HHHHHHHHT-----------------TTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-T
T ss_pred HHHhhhhhc-----------------ccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-C
Confidence 111000000 000112233333333332 12233477788888999999998 55 7
Q ss_pred eEEecCCCceE-EEEEecCCCCCcccchHHHHHHHHHHHc-cCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHH
Q 041829 396 FEVVTPRIFSL-VCFRLLPPHNDEDHGNKLNHKLLDDINS-TGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQ 473 (486)
Q Consensus 396 ~~~~~~~~~~~-v~f~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~ 473 (486)
+++.. +..++ +++.+. + .+ ..++.+.|.+ .| +.+.+. +..++|+++ +. ++++++++++++|+
T Consensus 360 ~~~~~-~~~g~~~~~~~~--~-----~~--~~~~~~~l~~~~g-i~v~~g---~~~~iRis~-~~-~~~e~i~~~~~~l~ 423 (430)
T 2x5f_A 360 WQAYD-FNSGYFMAIKVH--D-----VD--PEALRKHLIDKYS-IGVIAL---NATDIRIAF-SC-VEKDDIPHVFDSIA 423 (430)
T ss_dssp EEECC-CCBSSEEEEEES--S-----SC--HHHHHHHHHHHHC-EECEEC---SSSEEEEEG-GG-SCGGGHHHHHHHHH
T ss_pred ceeeC-CCceEEEEeCCC--C-----CC--HHHHHHHHHHhCC-EEEecC---CCCeEEEEE-ec-CCHHHHHHHHHHHH
Confidence 88764 44444 566664 1 11 2457777776 67 555543 346899999 33 58999999999999
Q ss_pred HHHHHH
Q 041829 474 DKASAL 479 (486)
Q Consensus 474 ~~~~~l 479 (486)
++.+++
T Consensus 424 ~~l~~~ 429 (430)
T 2x5f_A 424 KAIDDL 429 (430)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 987654
No 144
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.87 E-value=1.1e-20 Score=189.18 Aligned_cols=321 Identities=12% Similarity=0.083 Sum_probs=210.4
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCC-CCCcCCCCC-CeEEcCchhHHHHHHHHHHHHHHHHHh
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLP-EDFLSSGQG-GGVIQGTASEAVLVVLLAARDKALKRV 168 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~~ 168 (486)
..+.+.+...+. ....|....+..++++++.+|+.+.+|.+ .+ .. ..++|+||++++..++.+...
T Consensus 46 ~~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~-----~~~~i~~t~g~~~al~~~~~~~~~------ 113 (396)
T 3jtx_A 46 KVITDALTASLH-ELEKYPLTAGLPELRQACANWLKRRYDGLTVD-----ADNEILPVLGSREALFSFVQTVLN------ 113 (396)
T ss_dssp HHHHHHHHHTGG-GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCC-----TTTSEEEESSHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCC-----CCCeEEEcCCcHHHHHHHHHHHhC------
Confidence 445555555443 23344444557899999999999999965 11 12 489999999999888876543
Q ss_pred CccCCCC-----eEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCC
Q 041829 169 GKNSLEK-----LVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGT 243 (486)
Q Consensus 169 ~~~~~~~-----~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~ 243 (486)
++ +.|+++..+|.++..+++..|. +++.+|++.+ ++.+|+++|++++++. +.+|+++.++
T Consensus 114 -----~g~~~~~d~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~-g~~~d~~~l~~~~~~~------~~~v~l~~p~ 178 (396)
T 3jtx_A 114 -----PVSDGIKPAIVSPNPFYQIYEGATLLGGG---EIHFANCPAP-SFNPDWRSISEEVWKR------TKLVFVCSPN 178 (396)
T ss_dssp -----C---CCCCEEEEEESCCHHHHHHHHHTTC---EEEEEECCTT-TCCCCGGGSCHHHHHT------EEEEEEESSC
T ss_pred -----CCCccCCCEEEEcCCCcHhHHHHHHHcCC---EEEEeecCCC-CCccCHHHHHHhhccC------cEEEEEECCC
Confidence 32 6888899999999999999999 9999999654 4789999999999763 4578888999
Q ss_pred ccccccCChH---HHHHHHHHhCCEEEeeccccchhccCccchhccc-----C-CcCCCceeeecccccCCC-CcceEEE
Q 041829 244 TSSTAVDPLL---ALGNIAKSNGMWFHVDAAYAGSACICPEYRQYID-----G-VEEADSFNMNAHKWFLTN-FDCSALW 313 (486)
Q Consensus 244 t~tG~id~l~---~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~-----~-~~~aDs~~~~~hK~l~~p-~~~g~l~ 313 (486)
|+||.+-|.+ +|+++|++||+++++|++|+.+............ + ....+.+..+++|.++.| ..+|+++
T Consensus 179 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 258 (396)
T 3jtx_A 179 NPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVA 258 (396)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEE
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEE
Confidence 9999997655 5999999999999999999875432201111100 0 024567788999975543 5578776
Q ss_pred EeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh-ChhhHHHHHHHHHHHHHHHHHHHhc
Q 041829 314 VKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY-GLENLQGYIRNHIQLAKHFEGLVAQ 392 (486)
Q Consensus 314 ~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~l~~ 392 (486)
. ++.... .+.....+. +.....+...++...+ -.+.+++..++..++.+++.+.|++
T Consensus 259 ~-~~~~~~-~~~~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 316 (396)
T 3jtx_A 259 G-DAELLK-NFLLYRTYH--------------------GSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQ 316 (396)
T ss_dssp E-CHHHHH-HHHHHHHHH--------------------TCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred e-CHHHHH-HHHHHHhhc--------------------ccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 433332 221100000 0011222222222222 2456788888888999999999987
Q ss_pred CCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHc-cCcEEEEeee-E--------CCEeEEEEEecCCCCCH
Q 041829 393 DLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINS-TGKIFISHTV-L--------SGKYILRFAVGAPLTEW 462 (486)
Q Consensus 393 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~-~--------~~~~~lRi~~~~~~~t~ 462 (486)
. +.+..+....++.+.+... + ..++.++|.+ .| +.+.+.. + .+..++|+++ .. ++
T Consensus 317 ~--~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~l~~~~g-i~v~~g~~~~~~~~~~~~~~~~iRis~-~~--~~ 381 (396)
T 3jtx_A 317 V--FDVKLPDASFYIWLKVPDG-------D--DLAFARNLWQKAA-IQVLPGRFLARDTEQGNPGEGYVRIAL-VA--DV 381 (396)
T ss_dssp T--SCCCCCSSSSEEEEECTTS-------C--HHHHHHHHHHHHC-EECEEGGGGCCCCTTCCTTTTEEEEEC-CS--CH
T ss_pred c--CCccCCCeeEEEEEECCCC-------C--HHHHHHHHHHHCC-EEEeCChHhCCcccccCCCCCeEEEEE-cC--CH
Confidence 6 3333333333455565421 1 2456666654 46 5554432 2 2346999998 43 89
Q ss_pred HHHHHHHHHHHHH
Q 041829 463 RHVNAAWEVMQDK 475 (486)
Q Consensus 463 ~di~~~~~~l~~~ 475 (486)
+++++++++|.++
T Consensus 382 ~~i~~~l~~l~~~ 394 (396)
T 3jtx_A 382 ATCVKAAEDIVSL 394 (396)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 145
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.87 E-value=1.5e-20 Score=185.73 Aligned_cols=285 Identities=9% Similarity=0.072 Sum_probs=196.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCC-eEEEecCCCchhHHHHH
Q 041829 114 ATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEK-LVVYASDQTHSALQKAC 192 (486)
Q Consensus 114 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~-~~v~~s~~~H~s~~~a~ 192 (486)
..++++. +++++|.+.+ ..++|+|+|+++..++.+... ++ +.|+++..+|.++..++
T Consensus 60 ~~~lr~~----la~~~~~~~~-------~v~~~~G~~~ai~~~~~~~~~-----------~g~d~Vl~~~p~~~~~~~~~ 117 (356)
T 1fg7_A 60 PKAVIEN----YAQYAGVKPE-------QVLVSRGADEGIELLIRAFCE-----------PGKDAILYCPPTYGMYSVSA 117 (356)
T ss_dssp CHHHHHH----HHHHHTSCGG-------GEEEESHHHHHHHHHHHHHCC-----------TTTCEEEECSSSCTHHHHHH
T ss_pred HHHHHHH----HHHHhCCChH-------HEEEcCCHHHHHHHHHHHHhC-----------CCCCEEEEeCCChHHHHHHH
Confidence 4566666 7777788754 589999999998888776533 55 78889999999999999
Q ss_pred HHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHH---HHHHHHhCCEEEee
Q 041829 193 QIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLAL---GNIAKSNGMWFHVD 269 (486)
Q Consensus 193 ~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I---~~ia~~~g~~lhvD 269 (486)
+..|. +++.+|.+. +|.+|+++|+++++ . +.+|+++.++|+||.+-|.+++ +++|+ +|+++++|
T Consensus 118 ~~~g~---~~~~v~~~~--~~~~d~~~l~~~i~-~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~D 184 (356)
T 1fg7_A 118 ETIGV---ECRTVPTLD--NWQLDLQGISDKLD-G------VKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVAD 184 (356)
T ss_dssp HHHTC---EEEECCCCT--TSCCCHHHHHTSCT-T------EEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEE
T ss_pred HHcCC---EEEEeeCCC--CCCCCHHHHHHHhc-C------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEE
Confidence 99999 999998874 47899999998875 2 4578888999999999776555 45555 89999999
Q ss_pred ccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCc
Q 041829 270 AAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQ 348 (486)
Q Consensus 270 ~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 348 (486)
++|+.+.. ......... ....+.+..+++|+++.| ..+|+++.+ ++.+.........|
T Consensus 185 e~~~~~~~-~~~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~------------------ 243 (356)
T 1fg7_A 185 EAYIEFCP-QASLAGWLA-EYPHLAILRTLSKAFALAGLRCGFTLAN-EEVINLLMKVIAPY------------------ 243 (356)
T ss_dssp CTTGGGSG-GGCSGGGTT-TCTTEEEEEESSSTTCCGGGCCEEEEEC-HHHHHHHHHHSCSS------------------
T ss_pred ccchhhcC-CCcHHHHHh-hCCCEEEEecchHhhcCchhhhEEEEeC-HHHHHHHHHhcCCC------------------
Confidence 99986541 111111111 113467788999998744 347888874 33332221111111
Q ss_pred cCCCCCCCcHHHHHHHHHhChhh---HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHH
Q 041829 349 IPLGRRFRSLKLWMVLRLYGLEN---LQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLN 425 (486)
Q Consensus 349 ~~~sr~~~~l~~~~~l~~~g~~g---~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~ 425 (486)
....+..+++...+...+ +++..++..++++++.+.|++++++..+.++..+++.+++. . .
T Consensus 244 -----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-~----------~ 307 (356)
T 1fg7_A 244 -----PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK-A----------S 307 (356)
T ss_dssp -----CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET-T----------H
T ss_pred -----CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC-C----------H
Confidence 123445556666665444 67888888999999999999987654444555666777763 1 1
Q ss_pred HHHHHHHHccCcEEEEe-eeE-CCEeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 426 HKLLDDINSTGKIFISH-TVL-SGKYILRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 426 ~~l~~~l~~~g~~~~~~-~~~-~~~~~lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
.++.+.|.+.| +.+.+ ... ...+++|+++ . +++|+++++++|+++
T Consensus 308 ~~l~~~L~~~g-I~v~~~g~~~~~~~~iRis~-~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 308 SAVFKSLWDQG-IILRDQNKQPSLSGCLRITV-G---TREESQRVIDALRAE 354 (356)
T ss_dssp HHHHHHHHHTT-EECEECTTSTTCTTEEEEEC-C---CHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCC-EEEEECCCCCCCCCeEEEEe-C---CHHHHHHHHHHHHhh
Confidence 45777777777 44444 322 2124899998 3 589999999998753
No 146
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.87 E-value=3.5e-21 Score=194.10 Aligned_cols=257 Identities=16% Similarity=0.144 Sum_probs=180.7
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHH
Q 041829 110 TSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQ 189 (486)
Q Consensus 110 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 189 (486)
..|...++|+. +++++|.+. .+++++|++|+..++.+... +++.|+++...|.+..
T Consensus 80 ~~p~~~~le~~----lA~l~g~~~---------~v~~~sG~~Ai~~al~al~~-----------~Gd~Vi~~~~~y~~~~ 135 (430)
T 3ri6_A 80 SNPTVEDLEQR----LKNLTGALG---------VLALGSGMAAISTAILTLAR-----------AGDSVVTTDRLFGHTL 135 (430)
T ss_dssp CCHHHHHHHHH----HHHHHTCSE---------EEEESCHHHHHHHHHHHHCC-----------TTCEEEEETTCCHHHH
T ss_pred CCHHHHHHHHH----HHHHHCCCc---------EEEECCHHHHHHHHHHHHhC-----------CCCEEEEcCCCchhHH
Confidence 45677777776 888998754 67788889998888776533 6788999999998877
Q ss_pred H----HHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCE
Q 041829 190 K----ACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMW 265 (486)
Q Consensus 190 ~----a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~ 265 (486)
. .+...|+ +++.+|.+ |+++|++++++. +.+|+++.++|++|.+.|+++|+++|+++|++
T Consensus 136 ~~~~~~~~~~G~---~~~~v~~~-------d~~~l~~ai~~~------t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~ 199 (430)
T 3ri6_A 136 SLFQKTLPSFGI---EVRFVDVM-------DSLAVEHACDET------TKLLFLETISNPQLQVADLEALSKVVHAKGIP 199 (430)
T ss_dssp HHHHTHHHHTTC---EEEEECTT-------CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHcCC---EEEEeCCC-------CHHHHHHhhCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCE
Confidence 7 6677898 88888764 899999988653 46888999999999999999999999999999
Q ss_pred EEeeccccchhccCccchhcccCCcCCCceeeecccccCCCC--cceEEEEeCchHH---------HHHhcCCccccccc
Q 041829 266 FHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNF--DCSALWVKDRNTL---------IQSLSTNPEFLKNK 334 (486)
Q Consensus 266 lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~--~~g~l~~r~~~~~---------~~~~~~~~~yl~~~ 334 (486)
+|+|++|+.+....+. . .++|+++.+++|++++|. .+|+++.+....+ .+.+.. ..|+...
T Consensus 200 livD~a~~~~~~~~~~--~-----~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~-~~~i~~~ 271 (430)
T 3ri6_A 200 LVVDTTMTPPYLLEAK--R-----LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGP-MAFLYKA 271 (430)
T ss_dssp EEEECTTSCTTTCCGG--G-----GTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGG-GHHHHHH
T ss_pred EEEECCCcccccCChH--H-----cCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhch-hhHHHHH
Confidence 9999999866543221 1 168999999999998762 4566665443211 000000 0111000
Q ss_pred ccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC-----------
Q 041829 335 ASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRI----------- 403 (486)
Q Consensus 335 ~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~----------- 403 (486)
. ..+....+.....+.+|..++ |.+.+..++++..++++++.+.|+++|+++.+..|.
T Consensus 272 ~---------~~~~~~~g~~~~~~~a~l~l~--~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~ 340 (430)
T 3ri6_A 272 R---------KEVFQNLGPSLSPHNAYLQSL--GLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAK 340 (430)
T ss_dssp H---------HTHHHHHCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHH
T ss_pred H---------HHHHHhcCCCCCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHH
Confidence 0 000001222345566676665 567788889999999999999999999998654443
Q ss_pred -----ce-EEEEEecCCCCCcccchHHHHHHHHHHH
Q 041829 404 -----FS-LVCFRLLPPHNDEDHGNKLNHKLLDDIN 433 (486)
Q Consensus 404 -----~~-~v~f~~~~~~~~~~~~~~~~~~l~~~l~ 433 (486)
.+ +++|.+.. .+...++.+.+.
T Consensus 341 ~~~g~Gg~~lsf~l~~--------~~~~~~~~~~l~ 368 (430)
T 3ri6_A 341 RQFRYAGSILTFELES--------KEASYRFMDALK 368 (430)
T ss_dssp HHCSSCCSEEEEECSS--------HHHHHHHHHHCS
T ss_pred HhCCCCceEEEEEECC--------HHHHHHHHHhCC
Confidence 34 88888862 334466776654
No 147
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.87 E-value=1.4e-20 Score=190.38 Aligned_cols=286 Identities=13% Similarity=0.116 Sum_probs=194.3
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHH
Q 041829 111 SPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQK 190 (486)
Q Consensus 111 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 190 (486)
.|...++|+. +++++|.+. .+++++|++|+..++.+... +++.|+++...|.++..
T Consensus 113 ~~~~~~l~~~----lA~l~g~~~---------~v~~~sG~~Ai~~al~~l~~-----------~Gd~Vi~~~~~y~~~~~ 168 (445)
T 1qgn_A 113 NPTTVVLEEK----ISALEGAES---------TLLMASGMCASTVMLLALVP-----------AGGHIVTTTDCYRKTRI 168 (445)
T ss_dssp CHHHHHHHHH----HHHHHTCSE---------EEEESCHHHHHHHHHHHHSC-----------SSCEEEEETTSCHHHHH
T ss_pred ChHHHHHHHH----HHHHhCCCc---------EEEeCCHHHHHHHHHHHHhC-----------CCCEEEEcCCCchhHHH
Confidence 4444555554 888898763 56667778998888775432 56788888889988776
Q ss_pred H----HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEE
Q 041829 191 A----CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWF 266 (486)
Q Consensus 191 a----~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~l 266 (486)
. ++..|+ +++.+|.+ |+++|+++|++++ +.+|+++.++|++|.+.|+++|+++|+++|+++
T Consensus 169 ~~~~~~~~~G~---~v~~v~~~-------d~~~l~~ai~~~t-----v~lV~le~p~NptG~v~dl~~I~~la~~~g~~l 233 (445)
T 1qgn_A 169 FIETILPKMGI---TATVIDPA-------DVGALELALNQKK-----VNLFFTESPTNPFLRCVDIELVSKLCHEKGALV 233 (445)
T ss_dssp HHHHTGGGGTC---EEEEECSS-------CHHHHHHHHHHSC-----EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCC---EEEEeCCC-------CHHHHHHHhccCC-----CCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEE
Confidence 4 445688 88888753 8999999998643 258899999999999999999999999999999
Q ss_pred EeeccccchhccCccchhcccCCcCCCceeeecccccCCCC--cceEEEEeCchHHHHHhcCCcccccccccccCCccCC
Q 041829 267 HVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNF--DCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDY 344 (486)
Q Consensus 267 hvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~--~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~ 344 (486)
|+|++|+.+....+ . . .++|.++.++||+++++. .+|+++.++ +.+.. +. .+..
T Consensus 234 ivD~a~~~~~~~~~-~-----~-~g~Div~~S~sK~~gg~gd~~~G~l~~~~-~l~~~-l~---~~~~------------ 289 (445)
T 1qgn_A 234 CIDGTFATPLNQKA-L-----A-LGADLVLHSATKFLGGHNDVLAGCISGPL-KLVSE-IR---NLHH------------ 289 (445)
T ss_dssp EEECTTTCTTTCCT-T-----T-TTCSEEEECTTTTTTCSSSCCCEEEEECH-HHHHH-HH---HHHH------------
T ss_pred EEECCCcccccCCc-c-----c-cCCEEEEECCcccccccccceEEEEEECH-HHHHH-HH---HHHH------------
Confidence 99999986543221 1 1 168999999999998653 278887764 32222 11 0100
Q ss_pred CCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCe-EEecC-----C-----------CceEE
Q 041829 345 KDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRF-EVVTP-----R-----------IFSLV 407 (486)
Q Consensus 345 ~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~-~~~~~-----~-----------~~~~v 407 (486)
..+.....+..|..++. .+.+..++++..++++++.+.|+++|++ ++..+ | ..+++
T Consensus 290 -----~~g~~~~~~~a~~~~~~--l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~iv 362 (445)
T 1qgn_A 290 -----ILGGALNPNAAYLIIRG--MKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAV 362 (445)
T ss_dssp -----HHCCCCCHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEE
T ss_pred -----HhCCCCCHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEE
Confidence 01111234455666553 4566777888888999999999999998 44433 1 35788
Q ss_pred EEEecCCCCCcccchHHHHHHHHHHHcc------CcEE---EEeee------------ECC--EeEEEEEecCCCCCHHH
Q 041829 408 CFRLLPPHNDEDHGNKLNHKLLDDINST------GKIF---ISHTV------------LSG--KYILRFAVGAPLTEWRH 464 (486)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~~~l~~~l~~~------g~~~---~~~~~------------~~~--~~~lRi~~~~~~~t~~d 464 (486)
+|.+.. ..+...++.+.|... |.++ ..+.. ..| .+.+|+++ + .||
T Consensus 363 sf~l~~-------~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSv-G----~Ed 430 (445)
T 1qgn_A 363 SFEVDG-------DLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSF-G----VED 430 (445)
T ss_dssp EEEESS-------CHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEEC-C----SSC
T ss_pred EEEECC-------CHHHHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEe-c----cCC
Confidence 999864 122345566665421 2111 11100 012 26899999 3 468
Q ss_pred HHHHHHHHHHHHHH
Q 041829 465 VNAAWEVMQDKASA 478 (486)
Q Consensus 465 i~~~~~~l~~~~~~ 478 (486)
++++++.|+++.+.
T Consensus 431 id~li~~L~~al~~ 444 (445)
T 1qgn_A 431 FDDLKADILQALDS 444 (445)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887653
No 148
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.87 E-value=6.5e-21 Score=192.39 Aligned_cols=333 Identities=9% Similarity=0.008 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHh
Q 041829 89 VAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRV 168 (486)
Q Consensus 89 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~ 168 (486)
++..+.+.+..........|....+..++++++.+|+.+..+.+.. ...++|+|||+++..++.+..+
T Consensus 57 ~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~------~~i~~t~g~~~al~~~~~~l~~------ 124 (418)
T 3rq1_A 57 FLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGH------IRSIATAGGTGGIHHLIHNYTE------ 124 (418)
T ss_dssp CCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSE------EEEEEESHHHHHHHHHHHHHSC------
T ss_pred ccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCcccc------ccEEECCchHHHHHHHHHHhcC------
Confidence 3444555565543333345555567889999988888777664311 1489999999999888775433
Q ss_pred CccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecC-Ccccc
Q 041829 169 GKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVG-TTSST 247 (486)
Q Consensus 169 ~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~-~t~tG 247 (486)
+++.|+++..+|.++...++..|. +++.+|++++ ++.+|+++|++++++..... ...+++++.+ +|+||
T Consensus 125 -----~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~~-~~~~vi~~~p~~NPtG 194 (418)
T 3rq1_A 125 -----PGDEVLTADWYWGAYRVICSDTGR---TLVTYSLFDE-HNNFNHEAFQNRVNELAAKQ-TNVVVIFNTPGNNPTG 194 (418)
T ss_dssp -----TTCEEEEESSCCTHHHHHHHHTTC---EEEEECSBCT-TSSBCHHHHHHHHHHHHHHC-SEEEEEEECSSCTTTC
T ss_pred -----CCCEEEECCCCchhHHHHHHHcCC---EEEEEeeeCC-CCCcCHHHHHHHHHHhhccC-CCEEEEEeCCCCCCCC
Confidence 677899999999999999999999 9999998654 37999999999998642111 1236777878 89999
Q ss_pred ccCChHHH---HHHHH------HhCCEEEeeccccchhccCccchhcccCCcC--CC---ceeeecccccCCC-CcceEE
Q 041829 248 AVDPLLAL---GNIAK------SNGMWFHVDAAYAGSACICPEYRQYIDGVEE--AD---SFNMNAHKWFLTN-FDCSAL 312 (486)
Q Consensus 248 ~id~l~~I---~~ia~------~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~--aD---s~~~~~hK~l~~p-~~~g~l 312 (486)
.+-|.+++ +++|+ ++|+++++|++|.++................ -| .++.+++|.++.| ...|++
T Consensus 195 ~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~ 274 (418)
T 3rq1_A 195 YSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAM 274 (418)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEE
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEE
Confidence 99876555 55555 8999999999997654321111111111111 23 5567899998754 457887
Q ss_pred EE--eCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhCh--------hhHHHHHHHHHHH
Q 041829 313 WV--KDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGL--------ENLQGYIRNHIQL 382 (486)
Q Consensus 313 ~~--r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~--------~g~~~~~~~~~~~ 382 (486)
+. ++++... .+.....+..... ......+...++...+.. +..+++.++..++
T Consensus 275 ~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 337 (418)
T 3rq1_A 275 IGISDDEEIAD-EFFEVNKSTSRAT----------------WSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDR 337 (418)
T ss_dssp EEEESSHHHHH-HHHHHHHHHHHHH----------------TSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHH-HHHHHHHHHHhhc----------------cCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 76 3444332 2221111110000 001123334444443322 1233556677888
Q ss_pred HHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCH
Q 041829 383 AKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEW 462 (486)
Q Consensus 383 a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~ 462 (486)
++++.+.|+++ ++++. ++..+++.|.-.+ + ..++.+.|.+.| +.+.+. ..++|+++ . ..++
T Consensus 338 ~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~--------~--~~~~~~~l~~~g-i~v~~g----~~~iRis~-~-~~~~ 398 (418)
T 3rq1_A 338 ADIFKQEAAQV-GLPML-PYRGGFFITIPTD--------S--ANAICEELKKEH-IYVIAL----ANGIRIAA-C-GIPK 398 (418)
T ss_dssp HHHHHHHHHHH-TCCCC-CCCSSSEEEEECT--------T--HHHHHHHHHHTT-EECEEC----SSEEEEEG-G-GSCH
T ss_pred HHHHHHHHHhc-CCCCC-CCCceEEEEcCCC--------C--HHHHHHHHHhCC-EEEecC----CCCeEEEE-e-cCCH
Confidence 88999999887 78765 4444544432111 1 145666677777 444443 35799998 3 4589
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041829 463 RHVNAAWEVMQDKASAL 479 (486)
Q Consensus 463 ~di~~~~~~l~~~~~~l 479 (486)
+++++++++|+++.+++
T Consensus 399 ~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 399 CQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp HHHTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987764
No 149
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.87 E-value=6.8e-20 Score=179.23 Aligned_cols=300 Identities=11% Similarity=0.087 Sum_probs=202.5
Q ss_pred HHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCc
Q 041829 91 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGK 170 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 170 (486)
..+.+.+...+.. ...| ..+...++++. +++++|.+.+ ..++|+|+|+++..++.+.
T Consensus 32 ~~v~~a~~~~~~~-~~~y-~~~~~~~lr~~----la~~~~~~~~-------~i~~t~G~~~~l~~~~~~~---------- 88 (337)
T 3p1t_A 32 PRVQAAIAAAAAR-INRY-PFDAEPRVMRK----LAEHFSCPED-------NLMLVRGIDECFDRISAEF---------- 88 (337)
T ss_dssp HHHHHHHHHHGGG-TTSC-CTTHHHHHHHH----HHHHHTSCGG-------GEEEESHHHHHHHHHHHHS----------
T ss_pred HHHHHHHHHhhhh-hccC-CCCchHHHHHH----HHHHhCcCHH-------HEEEeCCHHHHHHHHHHhc----------
Confidence 3344555554432 2233 24555666655 7888888764 5899999998887766543
Q ss_pred cCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC
Q 041829 171 NSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD 250 (486)
Q Consensus 171 ~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id 250 (486)
+++.|+++..+|.++...++..|+ +++.+|+++ ++.+|+++|+++. ++.+|+++.++|+||.+.
T Consensus 89 ---~gd~vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l~~~~--------~~~~v~i~~p~nptG~~~ 152 (337)
T 3p1t_A 89 ---SSMRFVTAWPGFDGYRARIAVSGL---RHFEIGLTD--DLLLDPNDLAQVS--------RDDCVVLANPSNPTGQAL 152 (337)
T ss_dssp ---TTSEEEEESSSCSHHHHHHTTSCC---EEEEECBCT--TSSBCHHHHTTCC--------TTEEEEEESSCTTTCCCC
T ss_pred ---CCCeEEEeCCCcHHHHHHHHHcCC---EEEEecCCC--CCCCCHHHHHhhc--------CCCEEEEeCCCCCCCCCC
Confidence 345688899999999999999999 999999875 3699999998751 246899999999999999
Q ss_pred ChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccC-CCCcceEEEEeCchHHHHHhcCCcc
Q 041829 251 PLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFL-TNFDCSALWVKDRNTLIQSLSTNPE 329 (486)
Q Consensus 251 ~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~-~p~~~g~l~~r~~~~~~~~~~~~~~ 329 (486)
|++++.++|+++++ +++|++|+.+....+ ........+.+..+++|+++ .+..+|+++..+ ..+. .+.....
T Consensus 153 ~~~~l~~l~~~~~~-~ivDea~~~~~~~~~----~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~-~~~~-~l~~~~~ 225 (337)
T 3p1t_A 153 SAGELDQLRQRAGK-LLIDETYVDYSSFRA----RGLAYGENELVFRSFSKSYGLAGLRLGALFGPS-ELIA-AMKRKQW 225 (337)
T ss_dssp CHHHHHHHHHHCSE-EEEECTTGGGSSCSS----SCCCCBTTEEEEEESSSTTCCTTTCCEEEECCH-HHHH-HHHTTSC
T ss_pred CHHHHHHHHHhCCc-EEEECCChhhccccc----cccccCCCEEEEeeCchhccCcchheEEEEeCH-HHHH-HHHhhcC
Confidence 99999999999997 566999986432111 11122345678889999997 445678776643 3332 2211100
Q ss_pred cccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC-hhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEE
Q 041829 330 FLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG-LENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVC 408 (486)
Q Consensus 330 yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~ 408 (486)
+ . ....+...++...+. .+.+.+.+++..++++++.+.|+++ ++++. ++..+++.
T Consensus 226 ~--------------------~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~ 281 (337)
T 3p1t_A 226 F--------------------C--NVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GYRVA-SSEANFVL 281 (337)
T ss_dssp T--------------------T--CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBC-CCSSSEEE
T ss_pred C--------------------C--CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cCEEC-CCCCeEEE
Confidence 0 0 012223333333332 2456777888888899999999998 78765 55566776
Q ss_pred EEecCCCCCcccchHHHHHHHHHHHccCcEEEEee-eECCEeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q 041829 409 FRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHT-VLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKA 476 (486)
Q Consensus 409 f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~ 476 (486)
+.... . ..+.+.|.+.| +.+.+. .+...+++|+++ + +++|+++++++|+++.
T Consensus 282 ~~~~~-------~----~~~~~~l~~~g-i~v~~g~~~~~~~~iRis~-~---~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 282 VENAA-------G----ERTLRFLRERG-IQVKDAGQFGLHHHIRISI-G---REEDNDRLLAALAEYS 334 (337)
T ss_dssp EECTT-------T----HHHHHHHHHTT-EECEEGGGGTCCSEEEEEC-C---CHHHHHHHHHHHHHHT
T ss_pred EEcCC-------H----HHHHHHHHHCC-eEEEECccCCCCCeEEEec-C---CHHHHHHHHHHHHHHh
Confidence 66532 1 34556666777 444443 333346999998 3 6999999999998764
No 150
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.87 E-value=1.7e-20 Score=192.10 Aligned_cols=353 Identities=14% Similarity=0.092 Sum_probs=201.0
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHH
Q 041829 78 NYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVL 157 (486)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al 157 (486)
.|+.|.++.+. + .+.+.+...+......|..++...+++++ +++++|.+ .+++|+|||+||..++
T Consensus 42 ~ylD~~~~~~~-~-~v~~a~~~~l~~~~~~y~~~~~~~~l~~~----la~~~~~~---------~v~~t~~gt~A~~~al 106 (467)
T 2oqx_A 42 VFIDLLTDSGT-G-AVTQSMQAAMMRGDEAYSGSRSYYALAES----VKNIFGYQ---------YTIPTHQGRGAEQIYI 106 (467)
T ss_dssp CSEECSCCSSC-S-CCCHHHHHHTTSCCCCSSSCHHHHHHHHH----HHHHHCCS---------EEEEEC--CCSHHHHH
T ss_pred eeEecccCCCc-H-HHHHHHHHHhccCcceeccCchhHHHHHH----HHHHhCcC---------cEEEcCCcHHHHHHHH
Confidence 46666544433 3 33333444444333456666776777666 77888764 3899999999999999
Q ss_pred HHHHHHHHHHhCccCCCC-eEEEecCCCchhH-HHHHHHhCCCCCCeEEE------eCCC--CCCCccCHHHHHHHHHHH
Q 041829 158 LAARDKALKRVGKNSLEK-LVVYASDQTHSAL-QKACQIGGIHPQNFRVL------KTDS--STNYSLSPDSLAEAISRD 227 (486)
Q Consensus 158 ~~a~~~~~~~~~~~~~~~-~~v~~s~~~H~s~-~~a~~~~g~g~~~v~~v------~~~~--~~~~~id~~~L~~~i~~~ 227 (486)
.++++..... .|.++ +.|+++ ..|+.. .......|. .++.. +.+. ..++.+|+++|+++|++.
T Consensus 107 ~~~~~~~~~~---~G~~~~d~Ii~~-~~h~~t~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~ 179 (467)
T 2oqx_A 107 PVLIKKREQE---KGLDRSKMVAFS-NYFFDTTQGHSQINGC---TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEV 179 (467)
T ss_dssp HHHHHHHHHH---HCCCTTTCEEEE-SSCCHHHHHHHHHTTC---EEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHH
T ss_pred HHHhcccccc---CCCCccceEEec-ccccccchhhhhccCc---ceeeccccccccCCCCCCccCCcCHHHHHHHHHhc
Confidence 8887531111 01111 445555 577543 333444454 44332 1210 023589999999999863
Q ss_pred HhCCCccEEEEEecCCccc-ccc---CChHHHHHHHHHhCCEEEeeccccc-hhc--------cCc-cchhcc-cCCcCC
Q 041829 228 LTIGLIPFFLCATVGTTSS-TAV---DPLLALGNIAKSNGMWFHVDAAYAG-SAC--------ICP-EYRQYI-DGVEEA 292 (486)
Q Consensus 228 ~~~g~~p~~vv~~~~~t~t-G~i---d~l~~I~~ia~~~g~~lhvD~A~g~-~~~--------~~~-~~~~~~-~~~~~a 292 (486)
. ..++.+|+++.+++++ |.+ +++++|+++|++||+|+|+|+|++. ... ... ...... ...+.+
T Consensus 180 ~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 257 (467)
T 2oqx_A 180 G--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYA 257 (467)
T ss_dssp C--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGC
T ss_pred C--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccC
Confidence 1 0124578888888887 665 5689999999999999999988755 221 111 011110 001357
Q ss_pred CceeeecccccCCCCcceEEEEeCc---hHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhCh
Q 041829 293 DSFNMNAHKWFLTNFDCSALWVKDR---NTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGL 369 (486)
Q Consensus 293 Ds~~~~~hK~l~~p~~~g~l~~r~~---~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~ 369 (486)
|++++++||+++.|.| |+++.++. +.+.+. . .+..... + . .+.+. ..+.. ..++...-.
T Consensus 258 d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~-~---~~~~~~~----~---~----~~~~~-~~~~~-~~al~~~l~ 319 (467)
T 2oqx_A 258 DMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTEC-R---TLCVVQE----G---F----PTYGG-LEGGA-MERLAVGLY 319 (467)
T ss_dssp SEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHH-H---HHHHHTT----S---S----CCCCC-CCHHH-HHHHHHHHH
T ss_pred CeEEEecccccCCCCc-eEEEecChhHHHHHHHH-H---HhhhccC----C---c----ccccc-hhhhH-HHHHHHhhH
Confidence 8889999999988744 66666655 222211 1 1110000 0 0 00110 11111 112221001
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecC--CCCCcccchHH-HHHHHHHH-HccCcEEEEe-e
Q 041829 370 ENL-QGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLP--PHNDEDHGNKL-NHKLLDDI-NSTGKIFISH-T 443 (486)
Q Consensus 370 ~g~-~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~--~~~~~~~~~~~-~~~l~~~l-~~~g~~~~~~-~ 443 (486)
+.+ ++.+++..++++++.+.|+++ ++++. +.....+.+.+.. ...+ ..++ ..++.+.| .+.| +.+.+ .
T Consensus 320 ~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~L~~~~g-v~~~~~~ 393 (467)
T 2oqx_A 320 DGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFVDAGKLLPHIP---ADQFPAQALACELYKVAG-IRAVEIG 393 (467)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEEEHHHHSTTSC---GGGCHHHHHHHHHHHHHC-EECEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCCceEEEEechhhcccCC---cccccHHHHHHHHHHhcC-ceecccc
Confidence 112 234566678899999999988 88777 5555566666631 1111 1122 45677777 6677 44443 2
Q ss_pred eE-----C--------CEeEEEEEecCCC-CCHHHHHHHHHHHHHHHHHH
Q 041829 444 VL-----S--------GKYILRFAVGAPL-TEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 444 ~~-----~--------~~~~lRi~~~~~~-~t~~di~~~~~~l~~~~~~l 479 (486)
.+ . +..++|+++ ... +|++||++++++|+++.+++
T Consensus 394 ~~~~~~~~~~g~~~~~~~~~iRl~~-~~~~~t~e~i~~~~~~l~~~l~~~ 442 (467)
T 2oqx_A 394 SFLLGRDPKTGKQLPCPAELLRLTI-PRATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_dssp HHHHCBCTTTCSBCCCSCCEEEECC-CTTTSCHHHHHHHHHHHHHHHHSG
T ss_pred cccccccccccccccCccCeEEEEe-cCCCCCHHHHHHHHHHHHHHHhhh
Confidence 11 0 236899999 666 89999999999999987653
No 151
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.87 E-value=1.4e-20 Score=190.12 Aligned_cols=305 Identities=14% Similarity=0.168 Sum_probs=193.8
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHH
Q 041829 110 TSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQ 189 (486)
Q Consensus 110 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 189 (486)
.+|...++|+. +++++|.+. .+++++||+|+..++.+... +++.|+++...|.+..
T Consensus 56 ~~~~~~~l~~~----la~~~g~~~---------~v~~~sGt~A~~~~l~~~~~-----------~gd~vi~~~~~~~~~~ 111 (421)
T 2ctz_A 56 MNPTVDVLEKR----LAALEGGKA---------ALATASGHAAQFLALTTLAQ-----------AGDNIVSTPNLYGGTF 111 (421)
T ss_dssp BCHHHHHHHHH----HHHHHTCSE---------EEEESSHHHHHHHHHHHHCC-----------TTCEEEECSCCCHHHH
T ss_pred CChHHHHHHHH----HHHHhCCCc---------eEEecCHHHHHHHHHHHHhC-----------CCCEEEEeCCCchHHH
Confidence 34555566665 888888763 46777789999888876522 6778999999999987
Q ss_pred HHH----HHhCCCCCCeEEE-eCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCC
Q 041829 190 KAC----QIGGIHPQNFRVL-KTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGM 264 (486)
Q Consensus 190 ~a~----~~~g~g~~~v~~v-~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~ 264 (486)
..+ +..|+ +++.+ |.+ |+++|+++|++. +.+|+++.++|++|.+.|+++|+++|+++|+
T Consensus 112 ~~~~~~~~~~g~---~~~~~~~~~-------d~~~l~~~i~~~------~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~ 175 (421)
T 2ctz_A 112 NQFKVTLKRLGI---EVRFTSREE-------RPEEFLALTDEK------TRAWWVESIGNPALNIPDLEALAQAAREKGV 175 (421)
T ss_dssp HHHHTHHHHTTC---EEEECCTTC-------CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC---EEEEECCCC-------CHHHHHHhhccC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCC
Confidence 765 67788 88877 542 899999988653 4688899999999999999999999999999
Q ss_pred EEEeeccc-cchhccCccchhcccCCcCCCceeeecccccCCCCc-ceEEEEeC--chH----HHHHhcCCccccccccc
Q 041829 265 WFHVDAAY-AGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFD-CSALWVKD--RNT----LIQSLSTNPEFLKNKAS 336 (486)
Q Consensus 265 ~lhvD~A~-g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~-~g~l~~r~--~~~----~~~~~~~~~~yl~~~~~ 336 (486)
++|+|++| +.+. ..... + .++|++++++||++++|.. .|.+++++ ... +.........|......
T Consensus 176 ~livD~~~~~~g~-~~~~~-----~-~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~ 248 (421)
T 2ctz_A 176 ALIVDNTFGMGGY-LLRPL-----A-WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLT 248 (421)
T ss_dssp EEEEECGGGGGGT-SCCGG-----G-GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHH
T ss_pred EEEEECCcccccc-cCCcc-----c-cCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhh
Confidence 99999999 6543 11111 1 1689999999999998764 67666652 111 11111111111100000
Q ss_pred -ccCC--ccCCCCC--ccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C---------
Q 041829 337 -QANM--VVDYKDW--QIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVT-P--------- 401 (486)
Q Consensus 337 -~~~~--~~~~~~~--~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~-~--------- 401 (486)
.... ......+ ....+.....+.+|+.++. .+.+..++++..++++++.+.|+++|+++.+. +
T Consensus 249 ~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~--l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~ 326 (421)
T 2ctz_A 249 EAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLG--METLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHD 326 (421)
T ss_dssp HHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHH
T ss_pred hhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcC--cchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHH
Confidence 0000 0000000 0012334455666766654 45567778888899999999999999998863 1
Q ss_pred --------CCceEEEEEecCCCCCcccchHHHHHHHHHHHccCc---------EEEEeeeE------------CC--EeE
Q 041829 402 --------RIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGK---------IFISHTVL------------SG--KYI 450 (486)
Q Consensus 402 --------~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~---------~~~~~~~~------------~~--~~~ 450 (486)
...++++|.+.. ......++.+.+...+. ....+... .| .+.
T Consensus 327 ~~~~~~~~~~g~ivsf~l~~-------~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~ 399 (421)
T 2ctz_A 327 RAQKYFKGKPGAVLTFGLKG-------GYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEM 399 (421)
T ss_dssp HHHHHHTTCCCSEEEEEETT-------HHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTE
T ss_pred HHHHhccCCCceEEEEEeCC-------CHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCe
Confidence 235688999863 11233455555432220 01111000 01 268
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 451 LRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 451 lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
+|+++ +. +|++.+++.|+++
T Consensus 400 vRlS~-g~----e~~~~li~~l~~a 419 (421)
T 2ctz_A 400 VRLSV-GL----EHVEDLKAELKEA 419 (421)
T ss_dssp EEEEC-CS----SCHHHHHHHHHHH
T ss_pred EEEEe-CC----CCHHHHHHHHHHH
Confidence 99999 43 4677777777664
No 152
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.87 E-value=4e-20 Score=187.10 Aligned_cols=325 Identities=13% Similarity=0.062 Sum_probs=206.3
Q ss_pred cccChhhHHHHHHHHHHHHHHcCCCCCC-cC-CCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCc
Q 041829 108 WITSPAATELEMIVLDWLAKLLKLPEDF-LS-SGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTH 185 (486)
Q Consensus 108 ~~~~~~~~~le~~~~~~la~l~g~~~~~-~~-~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 185 (486)
|....+..++.+++.+++++.+|.+... .. ......++|+|+++++..++.+..+ +++.|++...+|
T Consensus 74 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-----------~gd~Vlv~~p~y 142 (425)
T 2r2n_A 74 YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN-----------PGDNVLLDEPAY 142 (425)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC-----------TTCEEEEESSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC-----------CCCEEEEeCCCc
Confidence 4445566789999999999999976410 00 0001589999999998888776543 677899999999
Q ss_pred hhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHH------hCCCccEEEEE-ecCCccccccCChH---HH
Q 041829 186 SALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDL------TIGLIPFFLCA-TVGTTSSTAVDPLL---AL 255 (486)
Q Consensus 186 ~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~------~~g~~p~~vv~-~~~~t~tG~id~l~---~I 255 (486)
..+...++..|. +++.+|++.+ .+|+++|++++++.. ..+..+.+|++ ..++|+||.+-|.+ +|
T Consensus 143 ~~~~~~~~~~g~---~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l 216 (425)
T 2r2n_A 143 SGTLQSLHPLGC---NIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEI 216 (425)
T ss_dssp HHHHHHHGGGTC---EEEEECEETT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHH
T ss_pred HHHHHHHHHcCC---EEEEeCcCCC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHH
Confidence 999999999999 9999998753 599999999986311 00123445654 57899999997755 99
Q ss_pred HHHHHHhCCEEEeeccccchhccCccchhcccCC--cCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccc
Q 041829 256 GNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGV--EEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKN 333 (486)
Q Consensus 256 ~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~--~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~ 333 (486)
+++|++||+++++|++|+.+.+....... +..+ ...+.+..+++|+++....+|+++.++. .+. .+.......
T Consensus 217 ~~~a~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~-l~~-~l~~~~~~~-- 291 (425)
T 2r2n_A 217 YELARKYDFLIIEDDPYYFLQFNKFRVPT-FLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKP-LIE-RVILHIQVS-- 291 (425)
T ss_dssp HHHHHHTTCEEEEECTTGGGBSSSSCCCC-TGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHH-HHH-HHHHHHHTT--
T ss_pred HHHHHHcCCEEEEECCcccccCCCCCCCC-ccccCCCCCEEEEccchhhccCccceEEEecCHH-HHH-HHHHHHHHh--
Confidence 99999999999999999864332111111 1112 1234667889999972234798887653 222 221100000
Q ss_pred cccccCCccCCCCCccCCCCCCCcHHHHHHHHHhCh----hhHHHHHHHHHHHHHHHHHHHhc-CCCeE-EecCCCceEE
Q 041829 334 KASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGL----ENLQGYIRNHIQLAKHFEGLVAQ-DLRFE-VVTPRIFSLV 407 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~----~g~~~~~~~~~~~a~~l~~~l~~-~~~~~-~~~~~~~~~v 407 (486)
+ .+...+....+..+++..+. +.++++.++..++++++.+.|++ .|++. +..+....++
T Consensus 292 --------------~-~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~ 356 (425)
T 2r2n_A 292 --------------T-LHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFL 356 (425)
T ss_dssp --------------T-CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEE
T ss_pred --------------c-CCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEE
Confidence 0 00001111223333443322 34566667778888999999987 67874 4433344455
Q ss_pred EEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeEC-----CEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 408 CFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLS-----GKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-----~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
.+++.... + .. ..+.+.+.+.|..+..+..+. +..++|+++ + ..+++++++++++|.++.++
T Consensus 357 ~~~~~~~~-~---~~---~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~-~-~~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 357 WIKVKGIN-D---VK---ELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASF-S-SASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp EEEETTCS-C---CH---HHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEEC-S-SCCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCC-C---HH---HHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEe-C-CCCHHHHHHHHHHHHHHHHH
Confidence 66664311 0 11 124556666774443333332 246899999 4 25999999999999988764
No 153
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.87 E-value=4.3e-20 Score=182.36 Aligned_cols=300 Identities=12% Similarity=0.072 Sum_probs=189.9
Q ss_pred cccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchh
Q 041829 108 WITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSA 187 (486)
Q Consensus 108 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s 187 (486)
|...+...++++. +++++|.+. .++++|||+|+..++.+....- ++.+|+++...|++
T Consensus 44 ~~~~~~~~~l~~~----la~~~~~~~---------~i~~~~g~~a~~~a~~~~~~~g---------~~~vvi~~~~~~~~ 101 (359)
T 3pj0_A 44 YGNGAVIEDFETK----IAKILGKQS---------AVFFPSGTMAQQIALRIWADRK---------ENRRVAYHPLSHLE 101 (359)
T ss_dssp TTBSHHHHHHHHH----HHHHHTCSE---------EEEESCHHHHHHHHHHHHHHHH---------TCCEEEECTTCHHH
T ss_pred ccCCHHHHHHHHH----HHHHhCCCc---------EEEeCCHHHHHHHHHHHHHhcC---------CCcEEEEeccceee
Confidence 4445555555555 889998765 4677889999998888766531 23357777778876
Q ss_pred HHHH---HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccc-cccCChHH---HHHHHH
Q 041829 188 LQKA---CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSS-TAVDPLLA---LGNIAK 260 (486)
Q Consensus 188 ~~~a---~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~t-G~id~l~~---I~~ia~ 260 (486)
.... +...|. +++.+|.+ ++.+|+++|+++ .+ ++.+|+++.++|++ |.+.|+++ |+++|+
T Consensus 102 ~~~~~~~~~~~g~---~~~~v~~~---~~~~d~~~l~~~-~~------~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~ 168 (359)
T 3pj0_A 102 IHEQDGLKELQQI---TPLLLGTA---NQLLTIDDIKSL-RE------PVSSVLIELPQREIGGQLPAFEELEKISEYCH 168 (359)
T ss_dssp HSSTTHHHHHHCC---EEEECSCT---TSCCCHHHHHTC-SS------CCSEEEEESSBGGGTSBCCCHHHHHHHHHHHH
T ss_pred ehhcchHHHhcCc---eEEecCCc---CCCcCHHHHHhc-cC------CceEEEEEecccCCCcccCCHHHHHHHHHHHH
Confidence 6532 355688 88888763 469999999987 21 25578888887777 68866555 599999
Q ss_pred HhCCEEEeeccccchhc--cCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCccccccccccc
Q 041829 261 SNGMWFHVDAAYAGSAC--ICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQA 338 (486)
Q Consensus 261 ~~g~~lhvD~A~g~~~~--~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~ 338 (486)
+||+++|+|++|..+.. ......... ..+|++++++||++++|.+ |+ ++.+++.+.........+ ...
T Consensus 169 ~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~~g-g~-~~~~~~l~~~~~~~~~~~-~~~---- 238 (359)
T 3pj0_A 169 EQGISLHLDGARLWEITPFYQKSAEEIC---ALFDSVYVSFYKGIGGIAG-AI-LAGNDDFVQEAKIWKRRY-GGD---- 238 (359)
T ss_dssp HHTCEEEEEETTCGGGHHHHTCCHHHHH---TTCSEEEEESSSTTCCSSC-EE-EEECHHHHHHHHHHHHHT-TCC----
T ss_pred HcCCEEEEECcchhcchhhhCCCHHHhh---ccCCEEEEeccccCCCcce-EE-EECCHHHHHHHHHHHHHh-CCC----
Confidence 99999999999764331 111111111 3679999999999988855 44 445554433221100000 000
Q ss_pred CCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cCCCceEEEEEecCCCCC
Q 041829 339 NMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVV-TPRIFSLVCFRLLPPHND 417 (486)
Q Consensus 339 ~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~-~~~~~~~v~f~~~~~~~~ 417 (486)
. .+....+.....+++.. .+.+++..++++++.+.|+++|++++. .++..+.+.+++...
T Consensus 239 ----------~-~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~--- 299 (359)
T 3pj0_A 239 ----------L-ISLYPYILSADYYFEKR-----IGKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENS--- 299 (359)
T ss_dssp ----------C-SCCHHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSC---
T ss_pred ----------c-chhHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCc---
Confidence 0 00000111222233221 245566778899999999999999986 466677777777531
Q ss_pred cccchHHHHHHHHHHHccCcEEEEee---eECCEeEEEEEecCC--CCCHHHHHHHHHHHHHH
Q 041829 418 EDHGNKLNHKLLDDINSTGKIFISHT---VLSGKYILRFAVGAP--LTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 418 ~~~~~~~~~~l~~~l~~~g~~~~~~~---~~~~~~~lRi~~~~~--~~t~~di~~~~~~l~~~ 475 (486)
.......+.+.|.++| +.+.+. ...+..++|+++... ..+.+++++.+++|.+.
T Consensus 300 ---~~~~~~~l~~~l~~~G-V~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 300 ---ADEIGAILTKIQDETG-VGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp ---HHHHHHHHHHHHHHHC-EECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred ---cchhHHHHHHHHHhcC-cEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 1223467778888888 444433 235678999988432 35788888888887653
No 154
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.86 E-value=6e-20 Score=183.84 Aligned_cols=292 Identities=12% Similarity=0.057 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHh
Q 041829 116 ELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIG 195 (486)
Q Consensus 116 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 195 (486)
....++.+++++++|.+.+ ..++|+|||+|+..++.+++... + ++.+|+.+...|.+...++...
T Consensus 87 ~~~~~l~~~la~~~~~~~~-------~v~~~~gg~~a~~~al~~~~~~~-~-------~~~vi~~~~~y~~~~~~~~~~~ 151 (395)
T 1vef_A 87 PMRGEFYRTLTAILPPELN-------RVFPVNSGTEANEAALKFARAHT-G-------RKKFVAAMRGFSGRTMGSLSVT 151 (395)
T ss_dssp HHHHHHHHHHHHTSCTTEE-------EEEEESSHHHHHHHHHHHHHHHH-S-------CCEEEEETTCCCCSSHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCcC-------EEEEcCcHHHHHHHHHHHHHHHh-C-------CCeEEEEcCCcCCCchhhhhhc
Confidence 4555566668999976543 58999999999999988765311 0 3344444444566666677766
Q ss_pred CCCC---------CCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----hHHHHHHHHHh
Q 041829 196 GIHP---------QNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP----LLALGNIAKSN 262 (486)
Q Consensus 196 g~g~---------~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~----l~~I~~ia~~~ 262 (486)
|... ..+..+| ..|+++|++++++. +.+|+++..+++||.+.| +++|+++|++|
T Consensus 152 g~~~~~~~~~p~~~~~~~~~-------~~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~ 218 (395)
T 1vef_A 152 WEPKYREPFLPLVEPVEFIP-------YNDVEALKRAVDEE------TAAVILEPVQGEGGVRPATPEFLRAAREITQEK 218 (395)
T ss_dssp CCHHHHGGGCSCSSCEEEEC-------TTCHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHHH
T ss_pred CCcccccccCCCCCCeeEeC-------CCcHHHHHHHhccC------EEEEEEeCccCCCCccCCCHHHHHHHHHHHHHc
Confidence 6510 0122332 25899999988642 457777777788998877 99999999999
Q ss_pred CCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCcc
Q 041829 263 GMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVV 342 (486)
Q Consensus 263 g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~ 342 (486)
|+++|+|++|+++......+.....++ ..|.++ .||+++.+.++|+++++++ +.+.+... .+.
T Consensus 219 ~~~li~Dea~~~~~~~g~~~~~~~~~~-~~d~~s--~sK~~~~g~~~G~~~~~~~--~~~~l~~~-~~~----------- 281 (395)
T 1vef_A 219 GALLILDEIQTGMGRTGKRFAFEHFGI-VPDILT--LAKALGGGVPLGVAVMREE--VARSMPKG-GHG----------- 281 (395)
T ss_dssp TCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEE--ECGGGGTTSSCEEEEEEHH--HHHTSCTT-SSC-----------
T ss_pred CCEEEEEecccCCccCCchhHhhhcCC-CCCEEE--EcccccCCCceEEEEehHH--HHhhhccC-CcC-----------
Confidence 999999999985321111111011122 467664 5999998888999998764 32222110 000
Q ss_pred CCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCC--eEEecCCCceEEEEEecCCCCCccc
Q 041829 343 DYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLR--FEVVTPRIFSLVCFRLLPPHNDEDH 420 (486)
Q Consensus 343 ~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~--~~~~~~~~~~~v~f~~~~~~~~~~~ 420 (486)
. +. .........+..+++.+.. .++.++..++++++.+.|++++. +... ++..+++++.+...
T Consensus 282 --~--~~-~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~g~~~~~~~~~~------ 346 (395)
T 1vef_A 282 --T--TF-GGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREV-RGMGLMVGLELKEK------ 346 (395)
T ss_dssp --C--SS-TTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEE-EEETTEEEEEESSC------
T ss_pred --C--Cc-CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhcCceEEE-EEEEEEEEEEEcCh------
Confidence 0 00 0001112233344444322 34667888899999999988743 2211 23345777776431
Q ss_pred chHHHHHHHHHHH-ccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q 041829 421 GNKLNHKLLDDIN-STGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKA 476 (486)
Q Consensus 421 ~~~~~~~l~~~l~-~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~ 476 (486)
..++.+.|. +.| +.+.+. +..++|+++ +..++++|+++++++|+++.
T Consensus 347 ----~~~l~~~l~~~~g-i~v~~~---~~~~iRi~~-~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 347 ----AAPYIARLEKEHR-VLALQA---GPTVIRFLP-PLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp ----SHHHHHHHHHHHC-EECEES---STTEEEECC-CTTCCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHCC-eEEecC---CCCEEEEeC-CCCCCHHHHHHHHHHHHHHh
Confidence 145677777 677 444442 346899998 77889999999999998764
No 155
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.86 E-value=1.4e-20 Score=188.51 Aligned_cols=326 Identities=11% Similarity=0.038 Sum_probs=202.4
Q ss_pred HHHHHHHHH-hcCc-CccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCC--CeEEcCchhHHHHHHHHHHHHHHHH
Q 041829 91 GFLGEMLSA-GLNI-VGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQG--GGVIQGTASEAVLVVLLAARDKALK 166 (486)
Q Consensus 91 ~~~~~~l~~-~~n~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~--~~~~t~ggt~a~~~al~~a~~~~~~ 166 (486)
..+.+.+.. .+.. ....|...++..++.+++.+++....+.+.+ .. ..++|+|||+++..++...... .
T Consensus 47 ~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~-----~~~~~i~~t~g~~~a~~~~~~~~~~~--~ 119 (397)
T 3fsl_A 47 QAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLK-----QQRVATIQTLGGSGALKVGADFLKRY--F 119 (397)
T ss_dssp HHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH-----TTCEEEEEESHHHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCccccc-----ccceEEEEcCCcHHHHHHHHHHHHhc--C
Confidence 445555555 5554 2345555667788999977777655442100 01 3799999999998876432211 1
Q ss_pred HhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccc
Q 041829 167 RVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSS 246 (486)
Q Consensus 167 ~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~t 246 (486)
+++.|+++..+|.++...++..|. +++.+|.+.++++.+|+++|++++++. .....+++++.++|+|
T Consensus 120 -------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~npt 186 (397)
T 3fsl_A 120 -------PESGVWVSDPTWENHVAIFAGAGF---EVSTYPWYDEATNGVRFNDLLATLKTL---QAGSIVLLHPCCHNPT 186 (397)
T ss_dssp -------TTCCEEEESSCCHHHHHHHHHTTC---CEEEECCEETTTTEECHHHHHHHHTTC---CTTCEEEECSSSCTTT
T ss_pred -------CCCeEEEeCCCchhHHHHHHHcCC---ceEEEeeeeccCCcCcHHHHHHHHHhC---CCCCEEEEeCCCCCCC
Confidence 567788899999999999999999 999999843235799999999998742 1224678888999999
Q ss_pred ccc---CChHHHHHHHHHhCCEEEeeccccchhccC-ccchhc--ccCCcCCCceeeecccccCCC-CcceEEEE--eCc
Q 041829 247 TAV---DPLLALGNIAKSNGMWFHVDAAYAGSACIC-PEYRQY--IDGVEEADSFNMNAHKWFLTN-FDCSALWV--KDR 317 (486)
Q Consensus 247 G~i---d~l~~I~~ia~~~g~~lhvD~A~g~~~~~~-~~~~~~--~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~--r~~ 317 (486)
|.+ +++++|+++|+++|+++++|++|+.+.... ...... +.+...-..+..+++|.++.| ..+|++++ .++
T Consensus 187 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~ 266 (397)
T 3fsl_A 187 GADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDA 266 (397)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSSH
T ss_pred CcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEecCCH
Confidence 999 557799999999999999999998755321 011111 111123346677889999743 45788775 343
Q ss_pred hHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC--------hhhHHHHHHHHHHHHHHHHHH
Q 041829 318 NTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG--------LENLQGYIRNHIQLAKHFEGL 389 (486)
Q Consensus 318 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--------~~g~~~~~~~~~~~a~~l~~~ 389 (486)
..+.+.......+.... .+ ....+...++...+. .+.++++.++..++++++.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (397)
T 3fsl_A 267 EAAGRVLGQLKATVRRN----------------YS-SPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKV 329 (397)
T ss_dssp HHHHHHHHHHHHHHHTT----------------TS-SCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----------------cC-CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322211100110000 00 011222222222222 455778888889999999999
Q ss_pred HhcCC---CeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHH
Q 041829 390 VAQDL---RFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVN 466 (486)
Q Consensus 390 l~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~ 466 (486)
|++++ ++++.. |..+++.|.-.+ . ..+...+.+.| +++.+.. |++++ . .++++|+
T Consensus 330 L~~~~~~~~~~~~~-~~~~~~~~~~~~--------~---~~~~~~l~~~g-i~v~~g~-------Ris~~-~-~~~~~i~ 387 (397)
T 3fsl_A 330 LSTEMPERNFDYLL-NQRGMFSYTGLS--------A---AQVDRLREEFG-VYLIASG-------RMCVA-G-LNTANVQ 387 (397)
T ss_dssp HHHHCTTSCCTHHH-HCCSSEEECCCC--------H---HHHHHHHHTTC-EECCTTC-------EEEGG-G-CCTTTHH
T ss_pred HHhcCCCCCceeec-CCceEEEecCCC--------H---HHHHHHHHhCC-EEECCCC-------eEEEE-e-cCHhhHH
Confidence 98875 565543 333333332111 1 23444555566 5555431 99983 2 2557799
Q ss_pred HHHHHHHHH
Q 041829 467 AAWEVMQDK 475 (486)
Q Consensus 467 ~~~~~l~~~ 475 (486)
+++++|+++
T Consensus 388 ~~~~~l~~~ 396 (397)
T 3fsl_A 388 RVAKAFAAV 396 (397)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999865
No 156
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.86 E-value=2.1e-20 Score=187.96 Aligned_cols=252 Identities=15% Similarity=0.151 Sum_probs=176.9
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHH
Q 041829 111 SPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQK 190 (486)
Q Consensus 111 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 190 (486)
.|...++|+. +++++|.+. .++++||++|+..++.+... +++.|+++...|.+...
T Consensus 80 ~p~~~~l~~~----la~~~g~~~---------~~~~~sG~~Ai~~al~~l~~-----------~Gd~Vi~~~~~y~~~~~ 135 (414)
T 3ndn_A 80 NPTVSVFEER----LRLIEGAPA---------AFATASGMAAVFTSLGALLG-----------AGDRLVAARSLFGSCFV 135 (414)
T ss_dssp CHHHHHHHHH----HHHHHTCSE---------EEEESSHHHHHHHHHHTTCC-----------TTCEEEEESCCCHHHHH
T ss_pred ChHHHHHHHH----HHHHHCCCc---------EEEECCHHHHHHHHHHHHhC-----------CCCEEEEcCCccchHHH
Confidence 4545555554 899998643 78999999998887765432 67788899999988777
Q ss_pred HHHH----hCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEE
Q 041829 191 ACQI----GGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWF 266 (486)
Q Consensus 191 a~~~----~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~l 266 (486)
.++. +|+ +++.+|.+ |+++|++++++. +.+|+++.++|++|.+.|+++|+++|+++|+++
T Consensus 136 ~~~~~~~~~g~---~~~~v~~~-------d~~~l~~ai~~~------t~~v~le~p~NptG~~~~l~~i~~la~~~g~~l 199 (414)
T 3ndn_A 136 VCSEILPRWGV---QTVFVDGD-------DLSQWERALSVP------TQAVFFETPSNPMQSLVDIAAVTELAHAAGAKV 199 (414)
T ss_dssp HHHTHHHHTTC---EEEEECTT-------CHHHHHHHTSSC------CSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCc---EEEEeCCC-------CHHHHHHhcCCC------CeEEEEECCCCCCCccccHHHHHHHHHHcCCEE
Confidence 6654 888 88888764 899999988653 347888999999999999999999999999999
Q ss_pred EeeccccchhccCccchhcccCCcCCCceeeecccccCCCCc--ceEEEEeCchHHHHHhcCCcccccccccccCCccCC
Q 041829 267 HVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFD--CSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDY 344 (486)
Q Consensus 267 hvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~--~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~ 344 (486)
++|++|+.+....+. . .++|.++.+++|+++.+.. +|+++.++.. +.+.+.. +..
T Consensus 200 ivDe~~~~~~~~~~~--~-----~g~div~~S~sK~l~~~G~~~~G~vv~~~~~-~~~~l~~---~~~------------ 256 (414)
T 3ndn_A 200 VLDNVFATPLLQQGF--P-----LGVDVVVYSGTKHIDGQGRVLGGAILGDREY-IDGPVQK---LMR------------ 256 (414)
T ss_dssp EEECTTTHHHHCCCG--G-----GTCSEEEEETTTTTTCSSCCCCEEEEECHHH-HTTHHHH---HHH------------
T ss_pred EEECCCcccccCCch--h-----cCCCeEeccCCccccCCCCceEEEEEECHHH-HHHHHHH---HHH------------
Confidence 999999865433221 1 1689999999999987542 6777765432 2211110 000
Q ss_pred CCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC-----------------ceEE
Q 041829 345 KDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRI-----------------FSLV 407 (486)
Q Consensus 345 ~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~-----------------~~~v 407 (486)
..+.....+..|++++ +.+.+..++++..++++++.+.|+++|+++.+..|. ..++
T Consensus 257 -----~~g~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l 329 (414)
T 3ndn_A 257 -----HTGPAMSAFNAWVLLK--GLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVV 329 (414)
T ss_dssp -----HHCCCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEE
T ss_pred -----HcCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEE
Confidence 0111234556676665 456778888999999999999999999987553332 3578
Q ss_pred EEEecCCCCCcccchHHHHHHHHHHHcc
Q 041829 408 CFRLLPPHNDEDHGNKLNHKLLDDINST 435 (486)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~~~l~~~l~~~ 435 (486)
+|.+.+.. ....+...++.+.+...
T Consensus 330 ~~~l~~~~---~~~~~~~~~~~~~l~~~ 354 (414)
T 3ndn_A 330 TFALDCPE---DVAKQRAFEVLDKMRLI 354 (414)
T ss_dssp EEEECSCG---GGHHHHHHHHHHHCSSS
T ss_pred EEEEcCCc---cccHHHHHHHHHhCccc
Confidence 88885310 00023446677776543
No 157
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.86 E-value=3.6e-20 Score=188.47 Aligned_cols=335 Identities=10% Similarity=0.036 Sum_probs=203.9
Q ss_pred HHHHHHHHHhcCc-------Cc-----cccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHH
Q 041829 91 GFLGEMLSAGLNI-------VG-----FSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLL 158 (486)
Q Consensus 91 ~~~~~~l~~~~n~-------~~-----~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~ 158 (486)
..+.+.+...+.+ .. ..|....+..++++++.+|+.+.+|.+.. ....++|+|||+|+..++.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~-----~~~i~~t~G~t~al~~~~~ 124 (444)
T 3if2_A 50 ELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLT-----SENIALTNGSQNAFFYLFN 124 (444)
T ss_dssp HHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCC-----GGGEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCC-----HHHEEEecCcHHHHHHHHH
Confidence 4555666665544 21 34555566789999999999988876432 1269999999999988887
Q ss_pred HHHHHHHHHhCccCCCCe--------------EEEec-CCCchhHHHHH------HHhCCCCCCeEEEeCCCC-C--CCc
Q 041829 159 AARDKALKRVGKNSLEKL--------------VVYAS-DQTHSALQKAC------QIGGIHPQNFRVLKTDSS-T--NYS 214 (486)
Q Consensus 159 ~a~~~~~~~~~~~~~~~~--------------~v~~s-~~~H~s~~~a~------~~~g~g~~~v~~v~~~~~-~--~~~ 214 (486)
+... +++ .|+++ ..+|..+..++ ...|. .++.+|++.+ + +|.
T Consensus 125 ~l~~-----------~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~ 190 (444)
T 3if2_A 125 LFGG-----------AFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLP---HIDEVTHDGEEGFFKYR 190 (444)
T ss_dssp HSSE-----------EEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCC---EEEEEEETTEEEEEEEE
T ss_pred HHhC-----------CCccccccccccccccceEEEeCCCCccchhhcccccchhhccCc---eEEecccccccCccccC
Confidence 6532 333 45554 66776665533 22345 7777887742 1 258
Q ss_pred cCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcC
Q 041829 215 LSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEE 291 (486)
Q Consensus 215 id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~ 291 (486)
+|+++|++++++.. ..+.+|+++.++|+||.+-| +++|+++|++||+++|+|++|+.+.... .+.........
T Consensus 191 ~d~~~l~~~l~~~~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~ 266 (444)
T 3if2_A 191 VDFEALENLPALKE---GRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNI-IYSDAHLNWDN 266 (444)
T ss_dssp CCHHHHHTCHHHHT---TCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC-BCSCCCCCCCT
T ss_pred CCHHHHHHHHHhcC---CCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccc-ccccccccCCC
Confidence 99999999865422 12567888899999999988 8899999999999999999997532111 11111111234
Q ss_pred CCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhh
Q 041829 292 ADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLEN 371 (486)
Q Consensus 292 aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g 371 (486)
.+.++.++||++.....+|+++.. +.... .+....... +.....+...++...+....
T Consensus 267 ~~i~~~S~sK~~~~G~r~G~~~~~-~~l~~-~~~~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~ 324 (444)
T 3if2_A 267 NTILCFSLSKIGLPGMRTGIIVAD-AKVIE-AVSAMNAVV--------------------NLAPTRFGAAIATPLVANDR 324 (444)
T ss_dssp TEEEEEESTTTTCGGGCCEEEECC-HHHHH-HHHHHHHHH--------------------HSSCCCHHHHHHHHHHHTSH
T ss_pred CEEEEechhhccCCCCceEEEEEC-HHHHH-HHHHHHHhc--------------------cCCCChHHHHHHHHHHHcCc
Confidence 567889999985555667876653 33222 221100000 00111222222222221111
Q ss_pred ----HHH-HHHHHHHHHHHHHHHHhc-CC--CeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEee
Q 041829 372 ----LQG-YIRNHIQLAKHFEGLVAQ-DL--RFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHT 443 (486)
Q Consensus 372 ----~~~-~~~~~~~~a~~l~~~l~~-~~--~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 443 (486)
..+ +.++..++.+++.+.|.+ ++ ++++..+.....+.+.+...+ .+ ..++.+.|.+.| +.+.+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~-----~~--~~~l~~~l~~~g-i~v~~g 396 (444)
T 3if2_A 325 IKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLP-----IS--TLDLYERLKAKG-TLIVPS 396 (444)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCS-----SC--HHHHHHHHHHTT-EECEEG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCC-----CC--HHHHHHHHHHCC-eEEecc
Confidence 122 344555566666666654 44 466654444455566664311 11 245677777777 444443
Q ss_pred -eE--C--------CEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041829 444 -VL--S--------GKYILRFAVGAPLTEWRHVNAAWEVMQDKASALLA 481 (486)
Q Consensus 444 -~~--~--------~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~~ 481 (486)
.+ . +..++|+++ .. ++++|++++++|.++.+++..
T Consensus 397 ~~~~~~~~~~~~~~~~~~iRis~-~~--~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 397 EYFFPGVDVSDYQHAHECIRMSI-AA--DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp GGSCTTCCCTTCSGGGSEEEEES-SS--CHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcCCCCCcccccCCCeEEEEE-eC--CHHHHHHHHHHHHHHHHHHHc
Confidence 22 1 125899999 43 899999999999999887653
No 158
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.86 E-value=1e-20 Score=192.58 Aligned_cols=308 Identities=14% Similarity=0.024 Sum_probs=193.2
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchh-HH
Q 041829 111 SPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSA-LQ 189 (486)
Q Consensus 111 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s-~~ 189 (486)
.+....+|....+++++++|.+.. .++++|||+||..++.++++ +++.|+++...|.+ +.
T Consensus 86 ~~~~~~~e~~a~~~la~~~g~~~~--------~v~~~sGs~a~~~a~~~~~~-----------~Gd~Vl~~~~~~~~~~~ 146 (447)
T 3h7f_A 86 CEHVDVVENLARDRAKALFGAEFA--------NVQPHSGAQANAAVLHALMS-----------PGERLLGLDLANGGHLT 146 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSEE--------ECCCSSHHHHHHHHHHHHCC-----------TTCEEEEECGGGTCCGG
T ss_pred cHHHHHHHHHHHHHHHHHcCCCce--------EEEeCCHHHHHHHHHHHhcC-----------CCCEEEecCcccccccc
Confidence 344445666555899999998763 44478899999888876644 67788888888765 21
Q ss_pred HH--HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEE
Q 041829 190 KA--CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFH 267 (486)
Q Consensus 190 ~a--~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lh 267 (486)
.. ....|.+. .++.+|++++ ++.+|+++|++++++.. |.+|+++.++++++. |+++|+++|+++|+++|
T Consensus 147 ~~~~~~~~g~~~-~~~~~~~~~~-~~~~d~~~l~~~i~~~~-----~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli 217 (447)
T 3h7f_A 147 HGMRLNFSGKLY-ENGFYGVDPA-THLIDMDAVRATALEFR-----PKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLL 217 (447)
T ss_dssp GTCTTSHHHHSS-EEEEECCCTT-TCSCCHHHHHHHHHHHC-----CSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEE
T ss_pred hhhhhhhcCCee-EEEEcCcCcc-cCCcCHHHHHHHHHhcC-----CeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEE
Confidence 11 11222210 4556666644 47899999999997642 346777677776665 99999999999999999
Q ss_pred eeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCC
Q 041829 268 VDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDW 347 (486)
Q Consensus 268 vD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~ 347 (486)
+|++|+.+......+... ++.+|+++.++||++++|.+ |+++.++. ..........++.
T Consensus 218 ~Dea~~~g~~~~g~~~~~---~~~~di~~~s~sK~l~G~~g-G~i~~~~~-~~~~l~~~~~~~~---------------- 276 (447)
T 3h7f_A 218 VDMAHFAGLVAAGLHPSP---VPHADVVSTTVHKTLGGGRS-GLIVGKQQ-YAKAINSAVFPGQ---------------- 276 (447)
T ss_dssp EECTTTHHHHHTTSSCCS---TTTCSEEEEESSGGGCCCSC-EEEEECGG-GHHHHHHHHTTTT----------------
T ss_pred EECCchhhhhcCCCCCCC---CCCCcEEEecCCcCCCCCCe-EEEEECHH-HHHHHhhhcCCcc----------------
Confidence 999986544332221111 24689999999999988865 77776542 2221111001110
Q ss_pred ccCCCCC-CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcC----CCeEEecC-CCceEEEEEecCCCCCcccc
Q 041829 348 QIPLGRR-FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQD----LRFEVVTP-RIFSLVCFRLLPPHNDEDHG 421 (486)
Q Consensus 348 ~~~~sr~-~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~----~~~~~~~~-~~~~~v~f~~~~~~~~~~~~ 421 (486)
..+.. ....++.+++.....+.++++.++..++++++.+.|++. ++++++.. ...+++.+.+.+.+.
T Consensus 277 --~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 349 (447)
T 3h7f_A 277 --QGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPL----- 349 (447)
T ss_dssp --CSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSC-----
T ss_pred --cCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCC-----
Confidence 01111 112344455555555578889999999999999999886 58888753 345566666654321
Q ss_pred hHHHHHHHHHHHccCcEEEE----ee---eECCEeEEEEEecC---CCCCHHHHHHHHHHHHHHHH
Q 041829 422 NKLNHKLLDDINSTGKIFIS----HT---VLSGKYILRFAVGA---PLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 422 ~~~~~~l~~~l~~~g~~~~~----~~---~~~~~~~lRi~~~~---~~~t~~di~~~~~~l~~~~~ 477 (486)
+ ...+.+.|.+.| +.+. +. ......++|+++.. ...+++|++++++.|.++..
T Consensus 350 ~--~~~~~~~l~~~G-I~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~ 412 (447)
T 3h7f_A 350 D--GQAAEDLLHEVG-ITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALA 412 (447)
T ss_dssp C--HHHHHHHHHHTT-EECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHCC-eEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 1 123344444456 4443 11 11123579998621 12579999999999988764
No 159
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.86 E-value=8.4e-20 Score=192.54 Aligned_cols=312 Identities=13% Similarity=0.098 Sum_probs=199.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHH
Q 041829 112 PAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKA 191 (486)
Q Consensus 112 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a 191 (486)
....++|+. +|+++|.+.. .++++|+|.||..++.+... +++.|+++..+|.|+..+
T Consensus 195 g~i~eaE~~----lA~~fGa~~a--------~~v~nGts~An~~ai~al~~-----------pGD~VLv~r~~H~S~~~~ 251 (715)
T 3n75_A 195 GPHKEAEQY----IARVFNADRS--------YMVTNGTSTANKIVGMYSAP-----------AGSTILIDRNCHKSLTHL 251 (715)
T ss_dssp THHHHHHHH----HHHHHTCSEE--------EEESSHHHHHHHHHHHHHCC-----------TTCEEEEESSCCHHHHHH
T ss_pred HHHHHHHHH----HHHHhCCCCc--------eEECcHHHHHHHHHHHHhCC-----------CCCEEEECCCccHHHHHH
Confidence 345566666 9999998764 45666667888887776544 788999999999999999
Q ss_pred HHHhCCCCCCeEEEeCCCCCCCc----c-----CHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh
Q 041829 192 CQIGGIHPQNFRVLKTDSSTNYS----L-----SPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN 262 (486)
Q Consensus 192 ~~~~g~g~~~v~~v~~~~~~~~~----i-----d~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~ 262 (486)
+...|. +++.++.+.+ .|. + |+++|+++|++... .+.|.+|+++.+ |++|.+.|+++|+++|+++
T Consensus 252 l~lsGa---~pv~v~~~~~-~~gi~~~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~ 325 (715)
T 3n75_A 252 MMMSDV---TPIYFRPTRN-AYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK 325 (715)
T ss_dssp HHHSCC---EEEEECCCBC-TTCCBCCCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEECHHHHHHHCCCS
T ss_pred HHHcCC---EEEEEecccc-ccccccCcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCCHHHHHHHhCcC
Confidence 999999 9999987654 344 3 89999999987432 123557888888 8999999999999999876
Q ss_pred CCEEEeeccccchhccCccchhcccCCc---CCCce---eeecccccCCCCcceEEEEeCchHHHHHhcCCccccccccc
Q 041829 263 GMWFHVDAAYAGSACICPEYRQYIDGVE---EADSF---NMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKAS 336 (486)
Q Consensus 263 g~~lhvD~A~g~~~~~~~~~~~~~~~~~---~aDs~---~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~ 336 (486)
+++||+||+++..+.+.++.. ..+. .+|.+ +.++||+++++.++|++++++.... ..+.....++.
T Consensus 326 --~livDEAH~~~~~f~~~~~~~-~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~-~~~~~~~~~~~---- 397 (715)
T 3n75_A 326 --SIHFDSAWVPYTNFSPIYEGK-CGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNE-ETFNEAYMMHT---- 397 (715)
T ss_dssp --EEEEECTTCTTGGGSGGGTTS-STTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCH-HHHHHHHHHTS----
T ss_pred --cEEEccccccccccCCccccc-cccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhH-HHHHHHHHhhc----
Confidence 389999999876555544321 1121 36876 8999999999989999999865211 11111111111
Q ss_pred ccCCccCCCCCccCCCCCCC--cHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCC------eEEecCCCce---
Q 041829 337 QANMVVDYKDWQIPLGRRFR--SLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLR------FEVVTPRIFS--- 405 (486)
Q Consensus 337 ~~~~~~~~~~~~~~~sr~~~--~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~------~~~~~~~~~~--- 405 (486)
.+.... ..++-++++.+-.+.-+++.++..+++++|++.|+++++ |+++.+....
T Consensus 398 --------------STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~ 463 (715)
T 3n75_A 398 --------------TTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTE 463 (715)
T ss_dssp --------------CSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCS
T ss_pred --------------CCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchh
Confidence 111111 113334454444322255788999999999999988764 5666533110
Q ss_pred --------------------------EEEEEecCCCCCc--ccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecC
Q 041829 406 --------------------------LVCFRLLPPHNDE--DHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGA 457 (486)
Q Consensus 406 --------------------------~v~f~~~~~~~~~--~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~ 457 (486)
-+++.....+.+. .+..--...+.+.|.+.| +.+.-+... .+-+-+ +
T Consensus 464 ~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~-I~~E~~d~~---~vl~l~-s 538 (715)
T 3n75_A 464 CWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHG-IVVEKTGPY---NLLFLF-S 538 (715)
T ss_dssp CEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTT-CCCSEEETT---EEEEEC-C
T ss_pred hhccCcccccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCC-CEEEecCCC---cEEEEe-C
Confidence 1122221110000 000000123445555555 443333222 333444 7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 041829 458 PLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 458 ~~~t~~di~~~~~~l~~~~~~l 479 (486)
+..|++++++++++|.++.+..
T Consensus 539 ~g~~~~~~~~L~~aL~~~~~~~ 560 (715)
T 3n75_A 539 IGIDKTKALSLLRALTDFKRAF 560 (715)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999876543
No 160
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.86 E-value=5.3e-21 Score=186.81 Aligned_cols=277 Identities=10% Similarity=0.083 Sum_probs=182.1
Q ss_pred HHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHH----HHhCC
Q 041829 122 LDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKAC----QIGGI 197 (486)
Q Consensus 122 ~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~----~~~g~ 197 (486)
.+.+++++|.+. .+++++||+|+..++.+... +++.|+++...|.++...+ +..|+
T Consensus 4 ~~~la~~~g~~~---------~i~~~sG~~a~~~~~~~~~~-----------~g~~v~~~~~~~~~~~~~~~~~~~~~g~ 63 (331)
T 1pff_A 4 EGKIAKLEHAEA---------CAATASGMGAIAASVWTFLK-----------AGDHLISDDCLYGCTHALFEHQLRKFGV 63 (331)
T ss_dssp HHHHHHHHTCSE---------EEEESSHHHHHHHHHHHHCC-----------TTCEEEEESCCCHHHHHHHHTHHHHTTC
T ss_pred HHHHHHHhCCCe---------EEEeCChHHHHHHHHHHhcC-----------CCCEEEEcCCCcchHHHHHHHHHHhcCC
Confidence 344899999863 56677779998888775432 5677888999999887765 45788
Q ss_pred CCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHH-hCCEEEeeccccchh
Q 041829 198 HPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKS-NGMWFHVDAAYAGSA 276 (486)
Q Consensus 198 g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~-~g~~lhvD~A~g~~~ 276 (486)
+++.+|. +|+++|+++++++ +.+|+++.++|++|.+.|+++|.++|++ +|+++|+|++|+.+.
T Consensus 64 ---~~~~~~~-------~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~ 127 (331)
T 1pff_A 64 ---EVDFIDM-------AVPGNIEKHLKPN------TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPI 127 (331)
T ss_dssp ---EEEEECT-------TSTTHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHH
T ss_pred ---EEEEeCC-------CCHHHHHHhhcCC------CeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccc
Confidence 8888864 4788888887642 4688899999999999999999999999 999999999998765
Q ss_pred ccCccchhcccCCcCCCceeeecccccCCCCc--ceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCC
Q 041829 277 CICPEYRQYIDGVEEADSFNMNAHKWFLTNFD--CSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRR 354 (486)
Q Consensus 277 ~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~--~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~ 354 (486)
...+. . .+.|.++.++||++++|.+ +|+++.++++...........| .+..
T Consensus 128 ~~~~~-~------~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~--------------------~~~~ 180 (331)
T 1pff_A 128 LTNPL-D------LGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDI--------------------TGAI 180 (331)
T ss_dssp HCCGG-G------GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCC--------------------CCCC
T ss_pred cCChh-h------cCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhh--------------------cCCC
Confidence 43221 1 1689999999999998876 7888776534333221111110 0111
Q ss_pred CCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCC--------------CeEEecC---CCceEEEEEecCCCCC
Q 041829 355 FRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDL--------------RFEVVTP---RIFSLVCFRLLPPHND 417 (486)
Q Consensus 355 ~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~--------------~~~~~~~---~~~~~v~f~~~~~~~~ 417 (486)
...+..|.+++.+ +.+..+.++..++++.+.+.+++.+ ++++..+ ...++++|.+..
T Consensus 181 ~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---- 254 (331)
T 1pff_A 181 ISPHDAWLITRGT--LTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG---- 254 (331)
T ss_dssp CCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS----
T ss_pred CCHHHHHHHHcCc--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC----
Confidence 1233444433322 2334444555556666666665443 2322211 135678887641
Q ss_pred cccchHHHHHHHHHHHccCcEEEEee--e----------------------ECC--EeEEEEEecCCCCCHHHHHHHHHH
Q 041829 418 EDHGNKLNHKLLDDINSTGKIFISHT--V----------------------LSG--KYILRFAVGAPLTEWRHVNAAWEV 471 (486)
Q Consensus 418 ~~~~~~~~~~l~~~l~~~g~~~~~~~--~----------------------~~~--~~~lRi~~~~~~~t~~di~~~~~~ 471 (486)
. ..+...+.+.|.+..... . ..| ..++|+++ +..++++++++++++
T Consensus 255 ---~----~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~-~~~~t~~~i~~l~~~ 326 (331)
T 1pff_A 255 ---L----EKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSV-GCENVQDIIDDLKQA 326 (331)
T ss_dssp ---H----HHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEEC-CSSCHHHHHHHHHHH
T ss_pred ---H----HHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEE-ecCCHHHHHHHHHHH
Confidence 1 345556666664321110 0 011 36899999 778999999999999
Q ss_pred HHHH
Q 041829 472 MQDK 475 (486)
Q Consensus 472 l~~~ 475 (486)
|+++
T Consensus 327 l~~~ 330 (331)
T 1pff_A 327 LDLV 330 (331)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 8753
No 161
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.86 E-value=1.5e-20 Score=190.89 Aligned_cols=325 Identities=11% Similarity=0.079 Sum_probs=194.4
Q ss_pred cccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchh
Q 041829 108 WITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSA 187 (486)
Q Consensus 108 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s 187 (486)
|..++...++++. +++++|.+. .+++++||+|+..++.+++...+... ...+++.|+++..+|.+
T Consensus 58 ~~~~~~~~~l~~~----la~~~g~~~---------~i~~~sGt~a~~~al~~l~~~~~~~~--~~~~gd~Vi~~~~~~~~ 122 (437)
T 3bb8_A 58 LTTGRFNDAFEKK----LGEYLGVPY---------VLTTTSGSSANLLALTALTSPKLGVR--ALKPGDEVITVAAGFPT 122 (437)
T ss_dssp CBSCHHHHHHHHH----HHHHHTCSE---------EEEESCHHHHHHHHHHHTTCGGGGGG--SCCTTCEEEECSSSCHH
T ss_pred cCCChHHHHHHHH----HHHHHCCCc---------EEEeCCHHHHHHHHHHHhhhcccccc--cCCCcCEEEECCCCcHH
Confidence 4456777777776 788888763 78999999999888876521000000 00156789999999999
Q ss_pred HHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEE
Q 041829 188 LQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFH 267 (486)
Q Consensus 188 ~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lh 267 (486)
+..+++..|+ +++.+|++++ ++.+|+++|++++++. +.+|+++. ++|...|+++|.++|+++|+++|
T Consensus 123 ~~~~~~~~g~---~~~~v~~~~~-~~~~d~~~l~~~i~~~------~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li 189 (437)
T 3bb8_A 123 TVNPTIQNGL---IPVFVDVDIP-TYNVNASLIEAAVSDK------TKAIMIAH---TLGNLFDLAEVRRVADKYNLWLI 189 (437)
T ss_dssp HHHHHHHTTC---EEEECCEETT-TTEECGGGHHHHCCTT------EEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHcCC---EEEEEeccCc-cCCcCHHHHHHhcCCC------CeEEEEeC---CCCChhcHHHHHHHHHHcCCEEE
Confidence 9999999999 9999998753 4799999999988643 34666654 56888999999999999999999
Q ss_pred eeccccchhccCccchhcccCCcCCCceeeecccccCCCCc-ceEEEEeCchHHHHHhcCCcccccc----cccc-----
Q 041829 268 VDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFD-CSALWVKDRNTLIQSLSTNPEFLKN----KASQ----- 337 (486)
Q Consensus 268 vD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~-~g~l~~r~~~~~~~~~~~~~~yl~~----~~~~----- 337 (486)
+|+||+.+... ..+.. + ...|.++++++|....|.+ +|+++.++. .+...+....++-.. ....
T Consensus 190 ~D~a~~~g~~~--~~~~~--~-~~~d~~~~s~~~~k~l~~g~gg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (437)
T 3bb8_A 190 EDCCDALGSTY--DGKMA--G-TFGDIGTVSFYPAKHITMGEGGAVFTQSA-ELKSIIESFRDWGRDCYCAPGCDNTCKK 263 (437)
T ss_dssp EECTTCTTCEE--TTEET--T-SSSSEEEEECSTTSSSCCSSCEEEEESCH-HHHHHHHHHHBTTBCC------------
T ss_pred EECccccCceE--CCeec--c-cccCEEEEECcCCcCCCCCCeEEEEeCCH-HHHHHHHHHHHhCccccccccccccccc
Confidence 99999854433 11111 1 1268766764332222333 355554433 333221110111100 0000
Q ss_pred -c-----CCccCC-CCCc---cCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----
Q 041829 338 -A-----NMVVDY-KDWQ---IPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPR----- 402 (486)
Q Consensus 338 -~-----~~~~~~-~~~~---~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~----- 402 (486)
. .....+ ..++ ....-+...+...+++..+ +.+.+.+++..++++++.+.|++++++.++...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~ 341 (437)
T 3bb8_A 264 RFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQL--ERIEEFVEKRKANFKYLKDALQSCADFIELPEATENSD 341 (437)
T ss_dssp ----CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEE
T ss_pred ccccccccccccccccccccccCcccCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCc
Confidence 0 000000 0000 0111112233333344332 444677778889999999999999887765321
Q ss_pred -CceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEee-e--------EC--C--------------EeEEEEEec
Q 041829 403 -IFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHT-V--------LS--G--------------KYILRFAVG 456 (486)
Q Consensus 403 -~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~--------~~--~--------------~~~lRi~~~ 456 (486)
....+.+.+.... .....++.+.|.++|.. +... . +. + ...+|+++
T Consensus 342 ~~~~~~~~~~~~~~------~~~~~~l~~~L~~~GI~-v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~- 413 (437)
T 3bb8_A 342 PSWFGFPITLKEDS------GVSRIDLVKFLDEAKVG-TRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGI- 413 (437)
T ss_dssp CCCSSEEEEECGGG------SSCHHHHHHHHHHTTBC-CBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECC-
T ss_pred eeeEEEEEEECCcC------cCcHHHHHHHHHHCCCc-eeccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecC-
Confidence 1112333332110 00124677778777743 3221 0 00 0 13599998
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 041829 457 APLTEWRHVNAAWEVMQDKA 476 (486)
Q Consensus 457 ~~~~t~~di~~~~~~l~~~~ 476 (486)
++.+|++||++++++|+++.
T Consensus 414 ~~~~t~~di~~i~~~l~~~~ 433 (437)
T 3bb8_A 414 YPGLTHDHLDYVVSKFEEFF 433 (437)
T ss_dssp STTCCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 162
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.86 E-value=1.2e-19 Score=181.58 Aligned_cols=293 Identities=14% Similarity=0.071 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHhC
Q 041829 117 LEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIGG 196 (486)
Q Consensus 117 le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g 196 (486)
...++.+++++++|. + ..++++|||+|+..++.+++.......+.. .+++.|++...+|++....+..++
T Consensus 79 ~~~~l~~~la~~~g~-~--------~v~~~~~gt~a~~~al~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~~~~~~~~~ 148 (392)
T 3ruy_A 79 QLGPWYEKVAKLTNK-E--------MVLPMNTGAEAVETAIKTARRWAYDVKKVE-ANRAEIIVCEDNFHGRTMGAVSMS 148 (392)
T ss_dssp THHHHHHHHHHHHTC-S--------EEEEESSHHHHHHHHHHHHHHHHHHTSCCC-TTCCEEEEETTCCCCSSHHHHHTC
T ss_pred HHHHHHHHHHHhcCC-C--------EEEEeCcHHHHHHHHHHHHHHhhhhccCCC-CCCcEEEEEcCCcCCCCHhhhhcc
Confidence 445555669999983 3 389999999999999987765311110000 135577777777755544443332
Q ss_pred CC-C---------CCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----hHHHHHHHHHh
Q 041829 197 IH-P---------QNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP----LLALGNIAKSN 262 (486)
Q Consensus 197 ~g-~---------~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~----l~~I~~ia~~~ 262 (486)
.. . ..+..++. .|+++|++++++ .+.+|+++.++|++|.+.| +++|+++|++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~ 215 (392)
T 3ruy_A 149 SNEEYKRGFGPMLPGIIVIPY-------GDLEALKAAITP------NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKE 215 (392)
T ss_dssp SCTTTTTTCCSCCSSEEEECT-------TCHHHHHHHCCT------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTT
T ss_pred CChhhccccCCCCCCCeeeCc-------ccHHHHHHHhcc------CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc
Confidence 21 0 02333332 289999999863 2568899899999999998 99999999999
Q ss_pred CCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCCcccccccccccCCc
Q 041829 263 GMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMV 341 (486)
Q Consensus 263 g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~ 341 (486)
|+++|+|++|+++......+.....++ ..|.++++ |++.+. ...|+++.++ + +.+.+.. ...
T Consensus 216 ~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~~~S--K~l~gG~~~~G~~~~~~-~-~~~~~~~---~~~--------- 278 (392)
T 3ruy_A 216 NVLFVADEIQTGLGRTGKVFACDWDNV-TPDMYILG--KALGGGVFPISCAAANR-D-ILGVFEP---GSH--------- 278 (392)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTTTSCCEEEEECH-H-HHTTCCT---TSS---------
T ss_pred CCEEEEeechhCCCccccchhhhccCC-CCCEEEEc--hhhhCChhhhEEEEECH-H-HHhhhcc---CCc---------
Confidence 999999999975432211111111122 36777775 987653 4578887754 2 2211110 000
Q ss_pred cCCCCCccCCCCCCCcHHHH---HHHHHhChhhHHHHHHHHHHHHHHHHHHHhcC--CCeEEecCCCceEEEEEecCCCC
Q 041829 342 VDYKDWQIPLGRRFRSLKLW---MVLRLYGLENLQGYIRNHIQLAKHFEGLVAQD--LRFEVVTPRIFSLVCFRLLPPHN 416 (486)
Q Consensus 342 ~~~~~~~~~~sr~~~~l~~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~v~f~~~~~~~ 416 (486)
..+.....+... .+++.+. .++..++..++++++.+.|+++ +.+... ++..+++.+.+...
T Consensus 279 --------~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~g~~~~~~~~~~-- 344 (392)
T 3ruy_A 279 --------GSTFGGNPLACAVSIAALEVLE---EEKLTERSLQLGEKLVGQLKEIDNPMITEV-RGKGLFIGIELNEP-- 344 (392)
T ss_dssp --------CCSSTTCHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTTCCCTTEEEE-EEETTEEEEEESSC--
T ss_pred --------CCCCCCCHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHhcCCCceEE-EeeeeEEEEEEcch--
Confidence 000111223333 3344332 1567788889999999999987 334443 34456677776431
Q ss_pred CcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q 041829 417 DEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKA 476 (486)
Q Consensus 417 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~ 476 (486)
..++.+.|.+.| +.+.+. +..++|+++ +..+|++|+++++++|+++.
T Consensus 345 --------~~~l~~~l~~~g-i~v~~~---~~~~iRi~~-~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 345 --------ARPYCEQLKAAG-LLCKET---HENVIRIAP-PLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp --------SHHHHHHHHTTT-EECCCB---TTTEEEECC-CTTCCHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHCC-cEEecC---CCCEEEEEC-CCCCCHHHHHHHHHHHHHHh
Confidence 146777788777 555443 246899998 77889999999999998764
No 163
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.86 E-value=8.1e-20 Score=186.16 Aligned_cols=305 Identities=12% Similarity=0.030 Sum_probs=201.7
Q ss_pred cccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCc
Q 041829 106 FSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTH 185 (486)
Q Consensus 106 ~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 185 (486)
..|...++..++++++.+|+. .|++.. ....++|+|+++++..+ .+... +++.|+++...|
T Consensus 105 ~~y~~~~g~~~lr~~ia~~~~--~g~~~~-----~~~i~~t~G~~~al~~~-~~l~~-----------~gd~Vl~~~p~~ 165 (449)
T 3qgu_A 105 SGYGAEQGQGALREAVASTFY--GHAGRA-----ADEIFISDGSKCDIARI-QMMFG-----------SKPTVAVQDPSY 165 (449)
T ss_dssp CCSTTTTCCHHHHHHHHHHHH--TTTTCC-----GGGEEEESCHHHHHHHH-HHHHC-----------SSSCEEEEESCC
T ss_pred CCCCCCCCcHHHHHHHHHHHH--cCCCCC-----HHHEEEccCHHHHHHHH-HHHhC-----------CCCEEEEcCCCC
Confidence 345444567889999777776 554322 12589999999887665 33222 667788899999
Q ss_pred hhHHHHHHHhCCCCCC----------eEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC---h
Q 041829 186 SALQKACQIGGIHPQN----------FRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP---L 252 (486)
Q Consensus 186 ~s~~~a~~~~g~g~~~----------v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~---l 252 (486)
.++...++..|. + ++.+|++.++.+..|++++ ..+.+|+++.++|+||.+-+ +
T Consensus 166 ~~~~~~~~~~g~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~l~~p~NPtG~~~~~~~l 231 (449)
T 3qgu_A 166 PVYVDTSVMMGM---TGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----------KRTDIIFFCSPNNPTGAAATRAQL 231 (449)
T ss_dssp THHHHHHHHHTC---SCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----------CCCSEEEEESSCTTTCCCCCHHHH
T ss_pred hhHHHHHHHcCC---cccccccccceeEEEecccccCCcCChhHc-----------CCCCEEEEeCCCCCCCCcCCHHHH
Confidence 999999999998 7 9999998754456665432 12457888899999999965 8
Q ss_pred HHHHHHHHHhCCEEEeeccccchhccCccchhccc---CCcCCCceeeecccccC-CCCcceEEEEeCchHH------HH
Q 041829 253 LALGNIAKSNGMWFHVDAAYAGSACICPEYRQYID---GVEEADSFNMNAHKWFL-TNFDCSALWVKDRNTL------IQ 322 (486)
Q Consensus 253 ~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~---~~~~aDs~~~~~hK~l~-~p~~~g~l~~r~~~~~------~~ 322 (486)
++|+++|++||+++++|++|+++.... .....+. +....+.++.+++|+++ ....+|+++.++...- ..
T Consensus 232 ~~l~~l~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 310 (449)
T 3qgu_A 232 TELVNFARKNGSILVYDAAYALYISNP-DCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHA 310 (449)
T ss_dssp HHHHHHHHHHTCEEEEECTTGGGCCCT-TSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHH
T ss_pred HHHHHHHHHCCcEEEEEcchHhhhcCC-CCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHH
Confidence 888999999999999999998754321 1111111 11245677889999997 4466888887653210 00
Q ss_pred HhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC---hhhHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Q 041829 323 SLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG---LENLQGYIRNHIQLAKHFEGLVAQDLRFEVV 399 (486)
Q Consensus 323 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g---~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~ 399 (486)
.+.....+ .......+...++...+. .+.++++.++..++++++.+.|+++ ++++.
T Consensus 311 ~~~~~~~~--------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 369 (449)
T 3qgu_A 311 DWNRVMTT--------------------CFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVY 369 (449)
T ss_dssp HHHHHHHH--------------------SCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEE
T ss_pred HHHHHhhc--------------------ccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeee
Confidence 00000000 000112334444444443 3567788889999999999999998 88877
Q ss_pred cCCCceEEEEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEeee-E--CCEeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 400 TPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHTV-L--SGKYILRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 400 ~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~-~--~~~~~lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
.+....++.+.+. + .+ ..++.+.|.++ | +++.+.. + .+..++|+++ ..++++|++++++|+++
T Consensus 370 ~~~~~~~~~~~~~--~-----~~--~~~~~~~l~~~~g-I~v~pg~~f~~~~~~~iRis~---~~~~e~i~~~l~~l~~~ 436 (449)
T 3qgu_A 370 GGDDAPYIWVGFP--G-----KP--SWDVFAEILERCN-IVTTPGSGYGPAGEGFVRASA---FGSRENILEAVRRFKEA 436 (449)
T ss_dssp ESSSSSEEEEECT--T-----SC--HHHHHHHHHHHHC-EECEEGGGGCGGGTTEEEEEC---CSCHHHHHHHHHHHHHH
T ss_pred CCCCeeEEEEECC--C-----CC--HHHHHHHHHHHCC-EEEecchHhCCCCCCeEEEEe---cCCHHHHHHHHHHHHHH
Confidence 5544556666654 1 11 14566677765 6 5554432 2 2346999997 23899999999999988
Q ss_pred HHH
Q 041829 476 ASA 478 (486)
Q Consensus 476 ~~~ 478 (486)
.++
T Consensus 437 ~~~ 439 (449)
T 3qgu_A 437 YGK 439 (449)
T ss_dssp HC-
T ss_pred HHh
Confidence 754
No 164
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.86 E-value=7.8e-20 Score=182.69 Aligned_cols=218 Identities=13% Similarity=0.133 Sum_probs=158.0
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHH
Q 041829 111 SPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQK 190 (486)
Q Consensus 111 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 190 (486)
.|...++|+. +++++|.+. .+++++||+|+..++.+... +++.|+++...|.+...
T Consensus 58 ~~~~~~l~~~----la~~~g~~~---------~i~~~sG~~ai~~~~~~~~~-----------~gd~vl~~~~~y~~~~~ 113 (389)
T 3acz_A 58 NPTVEQFEEM----VCSIEGAAG---------SAAFGSGMGAISSSTLAFLQ-----------KGDHLIAGDTLYGCTVS 113 (389)
T ss_dssp CHHHHHHHHH----HHHHHTCSE---------EEEESSHHHHHHHHHTTTCC-----------TTCEEEEESSCCHHHHH
T ss_pred ChHHHHHHHH----HHHHhCCCe---------EEEeCCHHHHHHHHHHHHhC-----------CCCEEEEeCCCchHHHH
Confidence 4555555555 889998763 67788899998887765422 56788889999998766
Q ss_pred H----HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEE
Q 041829 191 A----CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWF 266 (486)
Q Consensus 191 a----~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~l 266 (486)
. ++..|+ +++.+|. .|+++|+++++++ +.+|+++.++|++|.+.|+++|+++|+++|+++
T Consensus 114 ~~~~~~~~~g~---~~~~v~~-------~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~l 177 (389)
T 3acz_A 114 LFTHWLPRFGI---EVDLIDT-------SDVEKVKAAWKPN------TKMVYLESPANPTCKVSDIKGIAVVCHERGARL 177 (389)
T ss_dssp HHHHHHHHTTC---EEEEECT-------TCHHHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHcCC---EEEEECC-------CCHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEE
Confidence 6 577888 8888875 3899999888653 458888999999999999999999999999999
Q ss_pred EeeccccchhccCccchhcccCCcCCCceeeecccccCCCCc--ceEEEEeCchHHHHHhcCCcccccccccccCCccCC
Q 041829 267 HVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFD--CSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDY 344 (486)
Q Consensus 267 hvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~--~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~ 344 (486)
++|++|+.+....+ .. .++|+++.++||++++|.+ +|+++.++.+.+.+ +.....+.
T Consensus 178 ivD~~~~~~~~~~~-~~------~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~-l~~~~~~~------------- 236 (389)
T 3acz_A 178 VVDATFTSPCFLKP-LE------LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIAT-IKFYRKDA------------- 236 (389)
T ss_dssp EEECTTTCTTTCCG-GG------TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHH-HHHHHHHH-------------
T ss_pred EEECCCccccccCc-cc------cCCeEEEECChhhccCCCCceeEEEEECcHHHHHH-HHHHHHhc-------------
Confidence 99999987653221 11 1689999999999999877 68888876333322 11100000
Q ss_pred CCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q 041829 345 KDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEV 398 (486)
Q Consensus 345 ~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~ 398 (486)
+.....+..|++++.+ +.+..++++..++++.+.+.|++++.++-
T Consensus 237 -------g~~~~~~~~~~~~~~l--~~l~~r~~~~~~~~~~l~~~l~~~~~v~~ 281 (389)
T 3acz_A 237 -------GSLMAPMDAFLCARGM--KTLPIRMQIHMENGLKVAKFLEQHEKIVK 281 (389)
T ss_dssp -------CCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred -------CCCCCHHHHHHHHcCc--cHHHHHHHHHHHHHHHHHHHHHcCCCeeE
Confidence 1112334666666654 44566777888889999999988876543
No 165
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.77 E-value=2.7e-23 Score=208.08 Aligned_cols=329 Identities=11% Similarity=0.044 Sum_probs=212.5
Q ss_pred HHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccC
Q 041829 93 LGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNS 172 (486)
Q Consensus 93 ~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~ 172 (486)
+.+.+...+......|... ..++++++.+|+.+.+|.+.+ ....++|+||++++..++.+...
T Consensus 49 v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~-----~~~v~~~~g~~~a~~~~~~~~~~---------- 111 (392)
T 3b1d_A 49 VKQAIHDYAEQLVYGYTYA--SDELLQAVLDWEKSEHQYSFD-----KEDIVFVEGVVPAISIAIQAFTK---------- 111 (392)
Confidence 3444444443322333322 678999999999988884322 12589999999999888876643
Q ss_pred CCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCC-CCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC
Q 041829 173 LEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDS-STNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP 251 (486)
Q Consensus 173 ~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~-~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~ 251 (486)
+++.|++...+|.++..+++..|. +++.+|.++ +++|.+|+++|++++++.. +.+|+++.++|++|.+-|
T Consensus 112 -~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~g~~~~d~~~l~~~l~~~~-----~~~v~~~~~~nptG~~~~ 182 (392)
T 3b1d_A 112 -EGEAVLINSPVYPPFARSVRLNNR---KLVSNSLKEENGLFQIDFEQLENDIVEND-----VKLYLLCNPHNPGGRVWE 182 (392)
Confidence 566788899999999999999999 899999853 3347799999999987321 346777889999999854
Q ss_pred ---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCC----cCCCceeeecccccC-CCCcceEEEEeCchHHHHH
Q 041829 252 ---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGV----EEADSFNMNAHKWFL-TNFDCSALWVKDRNTLIQS 323 (486)
Q Consensus 252 ---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~----~~aDs~~~~~hK~l~-~p~~~g~l~~r~~~~~~~~ 323 (486)
+++|+++|+++|+++++|++|+.+.......... ..+ ...+.+..+++|+++ ....+|+++.+++......
T Consensus 183 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 261 (392)
T 3b1d_A 183 REVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSF-NTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQF 261 (392)
Confidence 9999999999999999999998765322111111 111 134467788999997 4446788887654332211
Q ss_pred hcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCC
Q 041829 324 LSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQ-DLRFEVVTPR 402 (486)
Q Consensus 324 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~-~~~~~~~~~~ 402 (486)
......+ ++.....+....+..+++. +.+.++++.++..++++++.+.|++ +|++++. ++
T Consensus 262 ~~~~~~~-----------------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~ 322 (392)
T 3b1d_A 262 KHQQLVN-----------------NHHEVSSLGYIATETAYRY-GKPWLVALKAVLEENIQFAVEYFAQEAPRLKVM-KP 322 (392)
Confidence 1111111 0000011111222233332 3456777888888899999999988 7888775 44
Q ss_pred CceEEE-EEecCCCCCcccchHHHHHHHHHHH-ccCcEEEEeeeEC--CEeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041829 403 IFSLVC-FRLLPPHNDEDHGNKLNHKLLDDIN-STGKIFISHTVLS--GKYILRFAVGAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 403 ~~~~v~-f~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 477 (486)
..+++. +++...+ ....++.+.|. +.|..+..+..+. +..++|+++. +++++|++++++|+++.+
T Consensus 323 ~~~~~~~i~~~~~~-------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 323 QGTYLIWLDFSDYG-------LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIA---APKSLVEEICKRIVCCLP 391 (392)
Confidence 445544 4553210 11245677775 5674433333332 4568999983 257899999999987654
No 166
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.85 E-value=9.8e-20 Score=183.43 Aligned_cols=347 Identities=12% Similarity=0.055 Sum_probs=211.2
Q ss_pred CCcCCCCcccccCCCCCCHHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchh
Q 041829 71 VTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTAS 150 (486)
Q Consensus 71 ~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt 150 (486)
.....+..+.+.-+. ..++..+.+.+..........|...++..++.+++.+|+.+..+.+.. ...++|+||+
T Consensus 39 ~i~l~~g~~~~~~~~-~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~------~~i~~t~g~~ 111 (413)
T 3t18_A 39 VINAALGTLLDDKGK-IIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEGY------ISAIATPGGT 111 (413)
T ss_dssp CEECCSCCCBCTTSC-BCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSE------EEEEEESHHH
T ss_pred eEeccccCccCCCCC-cCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCcccc------CcEEEcCccH
Confidence 344444444443222 223334455555533222345555667789999988888777654311 2489999999
Q ss_pred HHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhC
Q 041829 151 EAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTI 230 (486)
Q Consensus 151 ~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~ 230 (486)
+++..++.+..+ +++.|+++...|.++...++..|. +++.+|++++ +|.+|+++|++++++....
T Consensus 112 ~al~~~~~~~~~-----------~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~ 176 (413)
T 3t18_A 112 GAIRSAIFSYLD-----------EGDPLICHDYYWAPYRKICEEFGR---NFKTFEFFTD-DFAFNIDVYKEAIDEGIRD 176 (413)
T ss_dssp HHHHHHHHHHCC-----------SSCEEEEESSCCTHHHHHHHHHTC---EEEEECCBCT-TSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----------CCCEEEECCCCcccHHHHHHHhCC---eEEEeeccCC-CCCcCHHHHHHHHHHHhhc
Confidence 999888775433 677899999999999999999999 9999998544 3799999999999863211
Q ss_pred CCccEEEEEecC-CccccccCChHHHH---HHHH------HhCCEEEeeccccchhccCccchhcccCCcC--CC---ce
Q 041829 231 GLIPFFLCATVG-TTSSTAVDPLLALG---NIAK------SNGMWFHVDAAYAGSACICPEYRQYIDGVEE--AD---SF 295 (486)
Q Consensus 231 g~~p~~vv~~~~-~t~tG~id~l~~I~---~ia~------~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~--aD---s~ 295 (486)
+ ...+++++.+ +|+||.+-|.+++. ++|+ ++|+++++|++|.++................ .+ .+
T Consensus 177 ~-~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 255 (413)
T 3t18_A 177 S-DRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVV 255 (413)
T ss_dssp C-SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEE
T ss_pred C-CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEE
Confidence 1 1236777778 89999998766555 5555 8999999999997765432211221111111 23 45
Q ss_pred eeecccccCCC-CcceEEEEe--CchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhCh---
Q 041829 296 NMNAHKWFLTN-FDCSALWVK--DRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGL--- 369 (486)
Q Consensus 296 ~~~~hK~l~~p-~~~g~l~~r--~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~--- 369 (486)
+.+++|.++.| ..+|+++.. +++... .+.....+.... .......+...++...+..
T Consensus 256 ~~S~sK~~~~~G~riG~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~a~~~~l~~~~~ 318 (413)
T 3t18_A 256 AFSMSKSHTAYGLRSGAAVGISSSKEIIE-EFEASLAHSARC----------------NWSNGTHAAQNILIELERAENK 318 (413)
T ss_dssp EEEHHHHTTCGGGCCEEEEEEESCHHHHH-HHHHHHHHHHHH----------------HTSSCCHHHHHHHHHTTSHHHH
T ss_pred EEecCccCCCcCcCcEEEEEecCCHHHHH-HHHHHHHHhhhc----------------cccCCChHHHHHHHHHhcChHH
Confidence 56899999844 457888762 444332 222111111000 0001123344444444332
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEE-EecCCCCCcccchHHHHHHHHHHHccCcEEEEeee
Q 041829 370 ----ENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCF-RLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTV 444 (486)
Q Consensus 370 ----~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f-~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~ 444 (486)
+..+++.++..++++++.+.|+++ ++++. ++..+++.| ... + ..++.+.|.+.| +.+.+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~~~~~~~~~~---------~--~~~~~~~l~~~g-v~v~~g- 383 (413)
T 3t18_A 319 KIYEQELVDLRNMLKSRADVFVTAAKEN-KLTMI-PYFGGFFTFIPTD---------K--AFDIVKDLEKEN-IFTIPS- 383 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCB-CCCSSSCEEEECS---------C--HHHHHHHHHHTT-EECEEC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcc-CCCceEEEEeCCC---------C--HHHHHHHHHhCC-EEEecC-
Confidence 233456677788889999999988 88765 344444333 321 1 145666676777 555443
Q ss_pred ECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 041829 445 LSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 445 ~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
..++|+++ ... +++++ +++|.++++++.
T Consensus 384 ---~~~iRis~-~~~-~~~~~---l~~l~~~l~~~~ 411 (413)
T 3t18_A 384 ---AKGIRVAI-CGV-GEEKI---PKLVQRLAFYTN 411 (413)
T ss_dssp ---SSEEEECT-TTS-CGGGH---HHHHHHHHHHHH
T ss_pred ---CCceEEEE-eeC-CHHHH---HHHHHHHHHHHh
Confidence 45899998 332 44444 666666655543
No 167
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.85 E-value=4.6e-20 Score=185.30 Aligned_cols=288 Identities=14% Similarity=0.090 Sum_probs=195.9
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHH
Q 041829 110 TSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQ 189 (486)
Q Consensus 110 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 189 (486)
..|...++|++ +++++|.+. .++++||++|+..++.+... +++.|+++...|.+..
T Consensus 80 ~~p~~~~le~~----lA~l~g~~~---------~i~~ssGt~Ai~~al~~l~~-----------~Gd~Vi~~~~~y~~~~ 135 (415)
T 2fq6_A 80 GTLTHFSLQQA----MCELEGGAG---------CVLFPCGAAAVANSILAFIE-----------QGDHVLMTNTAYEPSQ 135 (415)
T ss_dssp CCHHHHHHHHH----HHHHHTCSE---------EEEESSHHHHHHHHHHTTCC-----------TTCEEEEETTSCHHHH
T ss_pred CCchHHHHHHH----HHHHhCCCe---------EEEeCCHHHHHHHHHHHHhC-----------CCCEEEEeCCCchHHH
Confidence 45666777776 888888753 57778999999888764322 6778888999998877
Q ss_pred HHH----HHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHH--hC
Q 041829 190 KAC----QIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKS--NG 263 (486)
Q Consensus 190 ~a~----~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~--~g 263 (486)
..+ +..|+ +++.++.+ |+++|+++|+++ +.+|++..++|++|.+.|+++|+++|++ +|
T Consensus 136 ~~~~~~l~~~G~---~v~~v~~~-------d~~~le~ai~~~------tklV~~e~~~NptG~v~dl~~I~~la~~~~~g 199 (415)
T 2fq6_A 136 DFCSKILSKLGV---TTSWFDPL-------IGADIVKHLQPN------TKIVFLESPGSITMEVHDVPAIVAAVRSVVPD 199 (415)
T ss_dssp HHHHHTGGGGTC---EEEEECTT-------CGGGGGGGCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCc---EEEEECCC-------CHHHHHHhhccC------CcEEEEECCCCCCCEeecHHHHHHHHHhhcCC
Confidence 665 34678 88888643 788899888653 4588889999999999999999999999 99
Q ss_pred CEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCc--ceEEEEeCchHHHHHhcCCcccccccccccCCc
Q 041829 264 MWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFD--CSALWVKDRNTLIQSLSTNPEFLKNKASQANMV 341 (486)
Q Consensus 264 ~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~--~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~ 341 (486)
+++|+|++|+.+....+ .. .++|.++.++||+++.+.+ .|+++.++. .+...... . .
T Consensus 200 ~~livD~a~a~~~~~~p-~~------~g~Div~~S~sK~lg~~g~~~~G~l~~~~~-~~~~l~~~----~-~-------- 258 (415)
T 2fq6_A 200 AIIMIDNTWAAGVLFKA-LD------FGIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLREN----A-Y-------- 258 (415)
T ss_dssp CEEEEECTTTTTTSSCG-GG------GTCSEEEEETTTTTTCSSSCCCEEEEECTT-THHHHHHH----H-H--------
T ss_pred CEEEEECCCcccccCCc-cc------cCCeEEEEeCccccCCCCCceEEEEEeCHH-HHHHHHHH----H-H--------
Confidence 99999999986532221 11 1689999999999998764 677777653 23221110 0 0
Q ss_pred cCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cC----------------CCc
Q 041829 342 VDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVV-TP----------------RIF 404 (486)
Q Consensus 342 ~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~-~~----------------~~~ 404 (486)
..+........|..++. .+.+..++++..++++.+.+.|++.|.++-+ .+ ...
T Consensus 259 --------~~G~~~~~~~a~~~~~~--l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g 328 (415)
T 2fq6_A 259 --------LMGQMVDADTAYITSRG--LRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSS 328 (415)
T ss_dssp --------HTTCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCC
T ss_pred --------hcCCCCCHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCc
Confidence 01111233455655543 4566778888889999999999998877543 21 135
Q ss_pred eEEEEEecCCCCCcccchHHHHHHHHHHHcc------CcE---EEE--e---ee-E----CC--EeEEEEEecCCCCCHH
Q 041829 405 SLVCFRLLPPHNDEDHGNKLNHKLLDDINST------GKI---FIS--H---TV-L----SG--KYILRFAVGAPLTEWR 463 (486)
Q Consensus 405 ~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~------g~~---~~~--~---~~-~----~~--~~~lRi~~~~~~~t~~ 463 (486)
++++|.+.... ......++++.+... |.. ... + +. . .| .+.+|+|+ +..++++
T Consensus 329 ~i~sf~l~g~~-----~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~-G~e~~~d 402 (415)
T 2fq6_A 329 GLFSFVLKKKL-----NNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHI-GLEDVDD 402 (415)
T ss_dssp SEEEEEESSCC-----CHHHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEEC-CSSCHHH
T ss_pred eEEEEEECCCC-----CHHHHHHHHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEe-cCCCHHH
Confidence 68889886310 012334555554321 211 111 1 00 0 12 36899999 7888999
Q ss_pred HHHHHHHHHHH
Q 041829 464 HVNAAWEVMQD 474 (486)
Q Consensus 464 di~~~~~~l~~ 474 (486)
+|+.+.++|++
T Consensus 403 ~i~~l~~al~~ 413 (415)
T 2fq6_A 403 LIADLDAGFAR 413 (415)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 168
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.85 E-value=2.1e-20 Score=188.79 Aligned_cols=327 Identities=10% Similarity=0.033 Sum_probs=203.4
Q ss_pred HHHHHHHHHhcCc-CccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCC--CeEEcCchhHHHHHHHHHHHHHHHHH
Q 041829 91 GFLGEMLSAGLNI-VGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQG--GGVIQGTASEAVLVVLLAARDKALKR 167 (486)
Q Consensus 91 ~~~~~~l~~~~n~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~--~~~~t~ggt~a~~~al~~a~~~~~~~ 167 (486)
..+.+.+...+.. ....|....+..++.+++.+++....+.+.+ .. ..++|+|||+|+..++...... .
T Consensus 70 ~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-----~~~~~i~~t~G~t~al~~~~~~~~~~--~- 141 (420)
T 4f4e_A 70 RAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIA-----AGRVVTAQALGGTGALKIGADFLRTL--N- 141 (420)
T ss_dssp HHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH-----TTCEEEEEEEHHHHHHHHHHHHHHHH--C-
T ss_pred HHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccc-----cCceEEEECCccHHHHHHHHHHHHHh--C-
Confidence 4445555554443 2345655667788999977777655442101 01 3799999999998885432111 0
Q ss_pred hCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccc
Q 041829 168 VGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSST 247 (486)
Q Consensus 168 ~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG 247 (486)
+++.|+++..+|.++...++..|. +++.+|+..+.++.+|+++|++++++. .....+++++.++|+||
T Consensus 142 ------~gd~Vlv~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG 209 (420)
T 4f4e_A 142 ------PKAKVAISDPSWENHRALFDMAGF---EVVAYPYYDAKTNGVNFDGMLAALNGY---EPGTIVVLHACCHNPTG 209 (420)
T ss_dssp ------TTCCEEEEESCCHHHHHHHHHTTC---CEEEEECEETTTTEECHHHHHHHHTTC---CTTCEEEEECSSCTTTC
T ss_pred ------CCCEEEEeCCCcHhHHHHHHHcCC---eEEEeeeeccccCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCC
Confidence 667788899999999999999999 999999832234799999999999642 12346888899999999
Q ss_pred cc---CChHHHHHHHHHhCCEEEeeccccchhccCc-cchh--cccCCcCCCceeeecccccCC-CCcceEEEE--eCch
Q 041829 248 AV---DPLLALGNIAKSNGMWFHVDAAYAGSACICP-EYRQ--YIDGVEEADSFNMNAHKWFLT-NFDCSALWV--KDRN 318 (486)
Q Consensus 248 ~i---d~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~-~~~~--~~~~~~~aDs~~~~~hK~l~~-p~~~g~l~~--r~~~ 318 (486)
.+ +++++|+++|+++|+++++|++|+++....+ .... .+.+...-+.++.+++|.++. ...+|++++ .++.
T Consensus 210 ~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~ 289 (420)
T 4f4e_A 210 VDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKD 289 (420)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSSHH
T ss_pred CCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHH
Confidence 99 4577999999999999999999977654211 1111 111122345777889999984 345788764 3333
Q ss_pred HHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC--------hhhHHHHHHHHHHHHHHHHHHH
Q 041829 319 TLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG--------LENLQGYIRNHIQLAKHFEGLV 390 (486)
Q Consensus 319 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--------~~g~~~~~~~~~~~a~~l~~~l 390 (486)
.+.........+.... ..+ ...+..+++...+. .+.++++.++..++++++.+.|
T Consensus 290 ~~~~~~~~~~~~~~~~--------------~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 352 (420)
T 4f4e_A 290 EAARVLSQLKRVIRTN--------------YSN---PPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERL 352 (420)
T ss_dssp HHHHHHHHHHHHHHTT--------------TSS---CCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--------------cCC---CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111000000000 000 11222222222211 3456788888899999999999
Q ss_pred hcC---CCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHH
Q 041829 391 AQD---LRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNA 467 (486)
Q Consensus 391 ~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ 467 (486)
+++ +++++.. |..++++|.-.+ . ..+...+.+.| +++.+. .|+++. ..++++|++
T Consensus 353 ~~~~~~~~~~~~~-~~~g~~~~~~~~--------~---~~~~~~l~~~g-I~v~~~-------~Ris~~--~~~~~~i~~ 410 (420)
T 4f4e_A 353 KAAGIERDFSFIN-AQRGMFSYSGLT--------S---AQVDRLREEFG-IYAVST-------GRICVA--ALNTRNLDV 410 (420)
T ss_dssp HHTTCSSCCTHHH-HSCSSEEECCCC--------H---HHHHHHHHHHC-EECCTT-------SEEEGG--GCCTTTHHH
T ss_pred HhcCCCCCceeEC-CCccEEEEeCCC--------H---HHHHHHHHhCC-EEecCC-------CeEEEe--cCCHHHHHH
Confidence 987 4665543 334444432111 1 23444455566 555542 399983 236677999
Q ss_pred HHHHHHHHH
Q 041829 468 AWEVMQDKA 476 (486)
Q Consensus 468 ~~~~l~~~~ 476 (486)
++++|+++.
T Consensus 411 ~~~~l~~~l 419 (420)
T 4f4e_A 411 VANAIAAVL 419 (420)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 169
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.85 E-value=3.7e-20 Score=187.69 Aligned_cols=305 Identities=13% Similarity=0.067 Sum_probs=199.1
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCch
Q 041829 107 SWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHS 186 (486)
Q Consensus 107 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~ 186 (486)
.|....+..++++++.+|+.+.++.+.+ ..++|+|+++++.. +..... +++.|+++...|.
T Consensus 93 ~y~~~~g~~~l~~~ia~~~~~~~~~~~~-------~i~~t~G~~~al~~-l~~l~~-----------~gd~Vl~~~p~y~ 153 (432)
T 3ei9_A 93 GYGAEQGAKPLRAAIAKTFYGGLGIGDD-------DVFVSDGAKCDISR-LQVMFG-----------SNVTIAVQDPSYP 153 (432)
T ss_dssp CCCCTTCCHHHHHHHHHHHHTTTTCCGG-------GEEEESCHHHHHHH-HHHHHC-----------TTCCEEEEESCCT
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCcc-------eEEECCChHHHHHH-HHHHcC-----------CCCEEEEeCCCCH
Confidence 4544557789999988888765565544 58999998887654 332221 6778889999999
Q ss_pred hHHHHHHHhCCCC---------CCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC---hHH
Q 041829 187 ALQKACQIGGIHP---------QNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP---LLA 254 (486)
Q Consensus 187 s~~~a~~~~g~g~---------~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~---l~~ 254 (486)
++..+++..|... .+++.+|++.++++..|++. ...+.+|+++.++|+||.+-+ +++
T Consensus 154 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~v~l~~p~NPtG~~~~~~~l~~ 222 (432)
T 3ei9_A 154 AYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----------VGRTDIIFFCSPNNPTGAAATREQLTQ 222 (432)
T ss_dssp HHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----------CCCCSEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----------CCCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 9999999888411 26888998865445556432 112457888899999999854 677
Q ss_pred HHHHHHHhCCEEEeeccccchhccCccchhc--ccCCcCCCceeeecccccC-CCCcceEEEEeCchH------HHHHhc
Q 041829 255 LGNIAKSNGMWFHVDAAYAGSACICPEYRQY--IDGVEEADSFNMNAHKWFL-TNFDCSALWVKDRNT------LIQSLS 325 (486)
Q Consensus 255 I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~--~~~~~~aDs~~~~~hK~l~-~p~~~g~l~~r~~~~------~~~~~~ 325 (486)
|+++|++||+++++|++|+.+... +..... +.+....+.++.+++|+++ ....+|+++.++... +...+.
T Consensus 223 l~~la~~~~~~li~Dea~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~ 301 (432)
T 3ei9_A 223 LVEFAKKNGSIIVYDSAYAMYMSD-DNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFN 301 (432)
T ss_dssp HHHHHHHHTCEEEEECTTGGGCCS-SCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHH
T ss_pred HHHHHHHcCcEEEEccchHhhccC-CCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHH
Confidence 888899999999999999875432 111111 1112244577889999997 445688888765430 011111
Q ss_pred CCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh---ChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Q 041829 326 TNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY---GLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPR 402 (486)
Q Consensus 326 ~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~---g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~ 402 (486)
....+. ......+...++...+ +.+.++++.++..++++++.+.|+++ ++++..+.
T Consensus 302 ~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 360 (432)
T 3ei9_A 302 RIICTC--------------------FNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGGK 360 (432)
T ss_dssp HHHHHS--------------------CCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEECS
T ss_pred HHhccc--------------------cCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-CceecCCC
Confidence 000000 0011233444444443 33557788889999999999999998 88887555
Q ss_pred CceEEEEEecCCCCCcccchHHHHHHHHHHHcc-CcEEEEee-eE--CCEeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q 041829 403 IFSLVCFRLLPPHNDEDHGNKLNHKLLDDINST-GKIFISHT-VL--SGKYILRFAVGAPLTEWRHVNAAWEVMQDKA 476 (486)
Q Consensus 403 ~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~~--~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~ 476 (486)
...++.+.+... + ..++...+.++ | +++.+. .+ .+..++|+++ .+++++|++++++|++..
T Consensus 361 ~~~~~~~~~~~~-------~--~~~~~~~ll~~~g-v~v~~g~~f~~~~~~~iRis~---~~~~e~l~~~l~rl~~~~ 425 (432)
T 3ei9_A 361 NAPYVWVHFPNQ-------S--SWDVFAEILEKTH-VVTTPGSGFGPGGEGFVRVSA---FGHRENILEACRRFKQLY 425 (432)
T ss_dssp SSSEEEEECTTS-------C--HHHHHHHHHHHHC-EECEEGGGGCGGGTTEEEEEC---CSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCC-------C--HHHHHHHHHHHCC-EEEeCchHhCCCCCCEEEEEe---cCCHHHHHHHHHHHHHHh
Confidence 555666666421 1 14556666655 6 555443 22 2357899998 448999999999998654
No 170
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.84 E-value=4.7e-20 Score=184.38 Aligned_cols=285 Identities=14% Similarity=0.160 Sum_probs=189.9
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHH
Q 041829 111 SPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQK 190 (486)
Q Consensus 111 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~ 190 (486)
.+...+++++ +++++|.+. .+++++||+|+..++. ... +++.|+++...|.+...
T Consensus 54 ~~~~~~lr~~----la~~~g~~~---------~i~~~sGt~a~~~al~-~~~-----------~gd~Vi~~~~~y~~~~~ 108 (393)
T 1n8p_A 54 NPNRENLERA----VAALENAQY---------GLAFSSGSATTATILQ-SLP-----------QGSHAVSIGDVYGGTHR 108 (393)
T ss_dssp CHHHHHHHHH----HHHHTTCSE---------EEEESCHHHHHHHHHH-TSC-----------SSCEEEEESSCCHHHHH
T ss_pred ChhHHHHHHH----HHHHhCCCc---------EEEECChHHHHHHHHH-HcC-----------CCCEEEEeCCCchHHHH
Confidence 3444555555 899998763 5666777999988876 322 56778888888886655
Q ss_pred H----HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh----
Q 041829 191 A----CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---- 262 (486)
Q Consensus 191 a----~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---- 262 (486)
. ++..|+ +++.+|++ | ++|++++++. +.+|+++.++|++|.+.|+++|+++|+++
T Consensus 109 ~~~~~~~~~G~---~v~~v~~~-------d-~~l~~~i~~~------t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~ 171 (393)
T 1n8p_A 109 YFTKVANAHGV---ETSFTNDL-------L-NDLPQLIKEN------TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQ 171 (393)
T ss_dssp HHHHTSTTTCS---CCEEESSH-------H-HHHHHHSCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHcCc---EEEEeCCC-------h-HHHHHhcccC------ceEEEEECCCCCcceecCHHHHHHHHHHhCCCC
Confidence 3 445677 88888864 6 7888877532 56888899999999999999999999999
Q ss_pred CCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCC-cc-eEEEEeCchHHHHHhcCCcccccccccccCC
Q 041829 263 GMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNF-DC-SALWVKDRNTLIQSLSTNPEFLKNKASQANM 340 (486)
Q Consensus 263 g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~-~~-g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~ 340 (486)
|+++|+|++|+.+... .... + ++|.++.++||+++.+. .. |+++.+++..+....... .
T Consensus 172 ~~~livD~a~~~~~~~--~~~~----~-~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~-~----------- 232 (393)
T 1n8p_A 172 DVILVVDNTFLSPYIS--NPLN----F-GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQ-N----------- 232 (393)
T ss_dssp TCEEEEECTTTHHHHC--CGGG----G-TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH-H-----------
T ss_pred CCEEEEeCCccccccC--CHHH----c-CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHH-H-----------
Confidence 9999999999877642 1111 1 58999999999988553 14 777776554333221100 0
Q ss_pred ccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCC-eEEe-cC-----C-----------
Q 041829 341 VVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLR-FEVV-TP-----R----------- 402 (486)
Q Consensus 341 ~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~-~~~~-~~-----~----------- 402 (486)
..+........|+.++.+ +.+...+++..++++.+.+.|++.|. +.-+ .+ +
T Consensus 233 ---------~~g~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~ 301 (393)
T 1n8p_A 233 ---------AIGAIPSPFDAWLTHRGL--KTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRD 301 (393)
T ss_dssp ---------HHCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGG
T ss_pred ---------hcCCCCCHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCC
Confidence 011122334555554443 44667777888889999999988876 6532 11 1
Q ss_pred -C-ceEEEEEecCCCCCcccchHHHHHHHHHHHccC------cE---EEEee-eE-----------CC--EeEEEEEecC
Q 041829 403 -I-FSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTG------KI---FISHT-VL-----------SG--KYILRFAVGA 457 (486)
Q Consensus 403 -~-~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g------~~---~~~~~-~~-----------~~--~~~lRi~~~~ 457 (486)
. .++++|.+.+ .......+.+.+...+ .. ...+. .. .| .+.+|+|+ +
T Consensus 302 ~~~~~i~~~~l~~-------~~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~-g 373 (393)
T 1n8p_A 302 ALGGGMISFRIKG-------GAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISV-G 373 (393)
T ss_dssp GCCCSEEEEEESS-------CHHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEEC-C
T ss_pred CCCccEEEEEeCC-------cHHHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEE-c
Confidence 2 5688888853 1233455666654322 11 01110 00 12 36899999 8
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 041829 458 PLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 458 ~~~t~~di~~~~~~l~~~ 475 (486)
..+++++|+.+.++|+++
T Consensus 374 ~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 374 IEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp SSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 889999999999999865
No 171
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.84 E-value=5.2e-20 Score=185.36 Aligned_cols=326 Identities=11% Similarity=0.045 Sum_probs=203.4
Q ss_pred HHHHHHHHHhc-C-cCccccccChhhHHHHHHHHHHHHHHcCC--CCCCcCCCCCCeEE--cCchhHHHHHHHHHHHHHH
Q 041829 91 GFLGEMLSAGL-N-IVGFSWITSPAATELEMIVLDWLAKLLKL--PEDFLSSGQGGGVI--QGTASEAVLVVLLAARDKA 164 (486)
Q Consensus 91 ~~~~~~l~~~~-n-~~~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~~~--t~ggt~a~~~al~~a~~~~ 164 (486)
..+.+.+...+ + .....|...++..++++.+.+|+....|. +.+ ..++ |+|||+|+..++..++..
T Consensus 51 ~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~-------~v~~~~t~gg~~a~~~~~~~~~~~- 122 (412)
T 1ajs_A 51 PVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEK-------RVGGVQSLGGTGALRIGAEFLARW- 122 (412)
T ss_dssp HHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTT-------CEEEEEEEHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCC-------cEEEEECCCcHHHHHHHHHHHHHh-
Confidence 44555555555 2 12334545566788888876666544442 222 5888 999999998886543321
Q ss_pred HHHhCccCCCC-----eEEEecCCCchhHHHHHHHhCCCCCC-eEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEE
Q 041829 165 LKRVGKNSLEK-----LVVYASDQTHSALQKACQIGGIHPQN-FRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLC 238 (486)
Q Consensus 165 ~~~~~~~~~~~-----~~v~~s~~~H~s~~~a~~~~g~g~~~-v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv 238 (486)
. ++ +.|+++..+|.++...++..|. + ++.+|.++++++.+|+++|++++++. +.+..+|+
T Consensus 123 -~-------~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~ 188 (412)
T 1ajs_A 123 -Y-------NGTNNKDTPVYVSSPTWENHNGVFTTAGF---KDIRSYRYWDTEKRGLDLQGFLSDLENA---PEFSIFVL 188 (412)
T ss_dssp -S-------SSSSCCCSCEEEEESCCTHHHHHHHHTTC---SCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEE
T ss_pred -C-------cCcCCCCCeEEEcCCCcHHHHHHHHHcCC---ceeEEEeeecCCCCccCHHHHHHHHHhC---CCCcEEEE
Confidence 1 44 6788888999999999999999 9 99999853235789999999999752 11245777
Q ss_pred EecCCccccccC---ChHHHHHHHHHhCCEEEeeccccchhccC--ccchhcccCC-cCCC--ceeeecccccCCC-Ccc
Q 041829 239 ATVGTTSSTAVD---PLLALGNIAKSNGMWFHVDAAYAGSACIC--PEYRQYIDGV-EEAD--SFNMNAHKWFLTN-FDC 309 (486)
Q Consensus 239 ~~~~~t~tG~id---~l~~I~~ia~~~g~~lhvD~A~g~~~~~~--~~~~~~~~~~-~~aD--s~~~~~hK~l~~p-~~~ 309 (486)
++.++|+||.+- ++++|+++|+++|+++++|++|.++.... ...... ..+ ...| .+..+++|.++.+ ..+
T Consensus 189 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~ri 267 (412)
T 1ajs_A 189 HACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAI-RYFVSEGFELFCAQSFSKNFGLYNERV 267 (412)
T ss_dssp ESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHH-HHHHHTTCCEEEEEECTTTSCCGGGCE
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHH-HHHhccCCcEEEEEecccccCCCCcce
Confidence 899999999994 56789999999999999999987654321 011011 101 1223 6688999988753 347
Q ss_pred eEEEEe--CchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC--------hhhHHHHHHHH
Q 041829 310 SALWVK--DRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG--------LENLQGYIRNH 379 (486)
Q Consensus 310 g~l~~r--~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--------~~g~~~~~~~~ 379 (486)
|++++. +++.+......-..+... +..+ ...+..+++...+. .+.++++.++.
T Consensus 268 G~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (412)
T 1ajs_A 268 GNLTVVAKEPDSILRVLSQMQKIVRV--------------TWSN---PPAQGARIVARTLSDPELFHEWTGNVKTMADRI 330 (412)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHT--------------TTSS---CCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHhc--------------ccCC---CChHHHHHHHHHHcCcchhHHHHHHHHHHHHHH
Confidence 888882 443221111000000000 0000 12223333333221 23677888888
Q ss_pred HHHHHHHHHHHhcCC---CeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEec
Q 041829 380 IQLAKHFEGLVAQDL---RFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVG 456 (486)
Q Consensus 380 ~~~a~~l~~~l~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~ 456 (486)
.++++++.+.|++++ ++++.. +..+++.|.-. . ...+...+.+.| +.+.+ .+|++++
T Consensus 331 ~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~---------~--~~~~~~~l~~~g-v~v~~-------~~Ris~~ 390 (412)
T 1ajs_A 331 LSMRSELRARLEALKTPGTWNHIT-DQIGMFSFTGL---------N--PKQVEYLINQKH-IYLLP-------SGRINMC 390 (412)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHH-HCCSSEEECCC---------C--HHHHHHHHHTTC-EECCT-------TSEEEGG
T ss_pred HHHHHHHHHHHHhhCCCCCeeEEc-CCCceEEEeCC---------C--HHHHHHHHHhCC-EEecC-------CcEEEee
Confidence 999999999999874 366543 33344443211 1 123333344556 55554 2699994
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 041829 457 APLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 457 ~~~~t~~di~~~~~~l~~~~~~ 478 (486)
..+++++++++++|+++.++
T Consensus 391 --~~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 391 --GLTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp --GCCTTTHHHHHHHHHHHHHH
T ss_pred --eCCHHHHHHHHHHHHHHHHh
Confidence 24899999999999988764
No 172
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.84 E-value=1.6e-19 Score=180.86 Aligned_cols=297 Identities=13% Similarity=0.070 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHh
Q 041829 116 ELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIG 195 (486)
Q Consensus 116 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 195 (486)
....++.+++++++|.+ ..++|+|||+|+..++.+++..... +..+ ++.+|+.+...|.+...+++..
T Consensus 82 ~~~~~l~~~la~~~g~~---------~v~~~~gg~~a~~~al~~~~~~~~~--~~~~-~~~vi~~~~~yh~~~~~~~~~~ 149 (397)
T 2ord_A 82 RPQMELAELLSKNTFGG---------KVFFANTGTEANEAAIKIARKYGKK--KSEK-KYRILSAHNSFHGRTLGSLTAT 149 (397)
T ss_dssp HHHHHHHHHHHHTTTSC---------EEEEESSHHHHHHHHHHHHHHHHHH--HCTT-CCEEEEEBTCCCCSSHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCC---------eEEEeCCHHHHHHHHHHHHHHHhhc--CCCC-CceEEEEcCCcCCCchhhhhcc
Confidence 45555666688988842 3899999999999998876542110 0000 2345555556677777777777
Q ss_pred CCC---------CCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc----cCChHHHHHHHHHh
Q 041829 196 GIH---------PQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA----VDPLLALGNIAKSN 262 (486)
Q Consensus 196 g~g---------~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~----id~l~~I~~ia~~~ 262 (486)
|.. ...++.+|. .|+++|++++++ ++.+|+++.++|++|. .+++++|+++|+++
T Consensus 150 g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~ 216 (397)
T 2ord_A 150 GQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRKMSE------DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEY 216 (397)
T ss_dssp BCHHHHGGGCSCCTTEEEECT-------TCHHHHHHHCCT------TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHH
T ss_pred CChhhccccCCCCCCeeEecC-------CCHHHHHHHhhc------CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHc
Confidence 761 001666664 289999998864 2568899999999999 37899999999999
Q ss_pred CCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCcc
Q 041829 263 GMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVV 342 (486)
Q Consensus 263 g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~ 342 (486)
|+++++|++|+++............+. ..|.+++ +|+++.+..+|+++++++- . .+.. . ..
T Consensus 217 ~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~s~--sK~~~~G~r~G~~~~~~~~-~--~l~~--~---~~-------- 277 (397)
T 2ord_A 217 DALLVFDEVQCGMGRTGKLFAYQKYGV-VPDVLTT--AKGLGGGVPIGAVIVNERA-N--VLEP--G---DH-------- 277 (397)
T ss_dssp TCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEEEECSTT-C--CCCT--T---SS--------
T ss_pred CCEEEEEecccCCccCccchhhhhhCC-CCCeeee--ccccCCCcCeEEEEEchHh-c--ccCC--C---Cc--------
Confidence 999999999975422111111001111 3676655 7999976779999887642 1 1110 0 00
Q ss_pred CCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCCceEEEEEecCCCCCc
Q 041829 343 DYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQD----LRFEVVTPRIFSLVCFRLLPPHNDE 418 (486)
Q Consensus 343 ~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~v~f~~~~~~~~~ 418 (486)
.. +. .........+..+++.+.. +++.++..++++++.+.|+++ +.+... ++..+++++.+....
T Consensus 278 -~~--~~-~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~--- 346 (397)
T 2ord_A 278 -GT--TF-GGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADV-RGMGLMIGIQFREEV--- 346 (397)
T ss_dssp -CC--SS-TTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEECTTS---
T ss_pred -CC--CC-CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEE-EEEeEEEEEEECChH---
Confidence 00 00 0111122233444554433 356677778888888888764 333222 334466777764311
Q ss_pred ccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041829 419 DHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 419 ~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 477 (486)
...++.+.|.+.| +.+.+. +..++|+++ +..++++|+++++++|+++.+
T Consensus 347 -----~~~~l~~~l~~~g-i~v~~~---~~~~iRis~-~~~~~~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 347 -----SNREVATKCFENK-LLVVPA---GNNTIRFLP-PLTVEYGEIDLAVETLKKVLQ 395 (397)
T ss_dssp -----CHHHHHHHHHHTT-EECEEE---TTTEEEECC-CTTCCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHCC-CEEccC---CCCEEEEEC-CcCCCHHHHHHHHHHHHHHHh
Confidence 1246777787777 444443 245899998 668899999999999998765
No 173
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.84 E-value=9.7e-20 Score=182.71 Aligned_cols=325 Identities=11% Similarity=0.056 Sum_probs=201.0
Q ss_pred HHHHHHHHhcC-cCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEE--cCchhHHHHHHHHHHHHHHHHHh
Q 041829 92 FLGEMLSAGLN-IVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVI--QGTASEAVLVVLLAARDKALKRV 168 (486)
Q Consensus 92 ~~~~~l~~~~n-~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~~~ 168 (486)
.+.+.+..... .....|....+..++.+++.+|+.+.+|.+.+ ..+.++ |+|||+++..++.+.+... +
T Consensus 50 ~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-----~~~i~~v~t~G~~~al~~~~~~l~~~~-~-- 121 (401)
T 7aat_A 50 CVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFK-----SGRYVTVQGISGTGSLRVGANFLQRFF-K-- 121 (401)
T ss_dssp HHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH-----TTCEEEEEEEHHHHHHHHHHHHHHHHC-T--
T ss_pred HHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccc-----cCceEEEecCcchHHHHHHHHHHHHhc-c--
Confidence 34444433332 23345555567788999988888776664211 014666 9999999998876654211 1
Q ss_pred CccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 169 GKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 169 ~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
+++.|+++..+|..+...++..|. +++.+|++..+++.+|++.+++.+++. ...+.+|+++.++|+||.
T Consensus 122 -----~gd~Vlv~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~ 190 (401)
T 7aat_A 122 -----FSRDVYLPKPSWGNHTPIFRDAGL---QLQAYRYYDPKTCSLDFTGAMEDISKI---PEKSIILLHACAHNPTGV 190 (401)
T ss_dssp -----TCCEEEEEESCCTTHHHHHHHTTC---EEEEEECEETTTTEECHHHHHHHHTTS---CTTCEEEEESSSCTTTCC
T ss_pred -----CCCEEEEcCCCchhHHHHHHHcCC---eeEeeeeeccccCccCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCC
Confidence 577899999999999999999999 999999864445799999999888652 223578899999999997
Q ss_pred c---CChHHHHHHHHHhCCEEEeeccccchhccCcc-----chhcccCCcCCCceeeecccccCCC-CcceEEEEe--Cc
Q 041829 249 V---DPLLALGNIAKSNGMWFHVDAAYAGSACICPE-----YRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVK--DR 317 (486)
Q Consensus 249 i---d~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~-----~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r--~~ 317 (486)
+ +++++|+++|++||+++++|.+|+.+...... .... .....-..++.+++|.++.| ..+|++++. ++
T Consensus 191 ~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~ 269 (401)
T 7aat_A 191 DPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHF-IEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDA 269 (401)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHH-HHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSH
T ss_pred CCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHH-HhcCCcEEEEecCCcccccccCceEEEEEEeCCH
Confidence 6 55889999999999999999999876542110 1111 11123346778999999755 237887762 33
Q ss_pred hHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--C------hhhHHHHHHHHHHHHHHHHHH
Q 041829 318 NTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--G------LENLQGYIRNHIQLAKHFEGL 389 (486)
Q Consensus 318 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g------~~g~~~~~~~~~~~a~~l~~~ 389 (486)
............+..... . ...+....++...+ + .+.+++..++..++++++.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~---------------~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 332 (401)
T 7aat_A 270 EEAKRVESQLKILIRPMY---------------S--NPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSN 332 (401)
T ss_dssp HHHHHHHHHHHHHHHHHH---------------S--SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc---------------C--CCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 311111100000000000 0 01122222222222 1 344667778888999999999
Q ss_pred HhcCC---CeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHH-HccCcEEEEeeeECCEeEEEEEecCCCCCHHHH
Q 041829 390 VAQDL---RFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDI-NSTGKIFISHTVLSGKYILRFAVGAPLTEWRHV 465 (486)
Q Consensus 390 l~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di 465 (486)
|+++. ++++. +|..+++.|.-.+ .+....+ .+.| +++.+ .+|+++ +..++ ++|
T Consensus 333 L~~~~~~~~~~~~-~~~~~~~~~~~~~------------~~~~~~ll~~~g-i~v~~-------~~Ris~-~~~~~-~~i 389 (401)
T 7aat_A 333 LKKEGSSHNWQHI-TDQIGMFCFTGLK------------PEQVERLTKEFS-IYMTK-------DGRISV-AGVAS-SNV 389 (401)
T ss_dssp HHHTTCCSCCHHH-HHCCSSEEECCCC------------HHHHHHHHHHHC-EECCT-------TCEEEG-GGCCT-TTH
T ss_pred HHhcCCCCCCcee-cCCcceEEecCCC------------HHHHHHHHHhCC-EeccC-------CCeEEe-ccCCh-hhH
Confidence 98872 35443 3444444442111 1223344 3456 55443 379999 44444 559
Q ss_pred HHHHHHHHHHH
Q 041829 466 NAAWEVMQDKA 476 (486)
Q Consensus 466 ~~~~~~l~~~~ 476 (486)
++++++|+++.
T Consensus 390 ~~~~~~l~~~~ 400 (401)
T 7aat_A 390 GYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 174
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.84 E-value=6.1e-20 Score=185.07 Aligned_cols=332 Identities=12% Similarity=0.112 Sum_probs=197.8
Q ss_pred HHHHHHHHHhcCcCc-----cccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHH
Q 041829 91 GFLGEMLSAGLNIVG-----FSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKAL 165 (486)
Q Consensus 91 ~~~~~~l~~~~n~~~-----~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~ 165 (486)
..+.+.+...+.++. ..|....+..++++++.+|+.+.+|.+.+ ....++|+|||+|+..++.+...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~-----~~~i~~t~G~t~al~~~~~~l~~--- 120 (417)
T 3g7q_A 49 DYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIE-----PQNIALTNGSQSAFFYLFNLFAG--- 120 (417)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCC-----GGGEEEESCHHHHHHHHHHHHSB---
T ss_pred HHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCC-----cccEEEeCCcHHHHHHHHHHHcC---
Confidence 455565555543321 24656667789999999999888876532 12699999999999888876543
Q ss_pred HHhCccCCCCe-----EEEec-CCCchhHHHHHHHh----CCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccE
Q 041829 166 KRVGKNSLEKL-----VVYAS-DQTHSALQKACQIG----GIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPF 235 (486)
Q Consensus 166 ~~~~~~~~~~~-----~v~~s-~~~H~s~~~a~~~~----g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~ 235 (486)
+++ .|+++ ...|..+...+... +.+. .+..++.+.. ++.+|+++|+ +.+ .+.
T Consensus 121 --------~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~d~~~l~--~~~------~~~ 182 (417)
T 3g7q_A 121 --------RRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARP-NIELLPEGQF-KYHVDFEHLH--IGE------ETG 182 (417)
T ss_dssp --------C----CCBEEEESSCCCHHHHHC-----CCEEECCC-EEEEEGGGEE-EEECCGGGCC--CCT------TEE
T ss_pred --------CCccCCcceEEEeCCCccccchhhccchhhhccccC-cccccCCccc-ccccCHHHhc--ccc------Cce
Confidence 322 67776 77777776655432 2211 3333443211 3678999987 322 256
Q ss_pred EEEEecCCccccccCC---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEE
Q 041829 236 FLCATVGTTSSTAVDP---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSAL 312 (486)
Q Consensus 236 ~vv~~~~~t~tG~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l 312 (486)
+|+++.++|+||.+-| +++|+++|++||+++|+|++|+.+.... .+..........+.++.+++|++.....+|++
T Consensus 183 ~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~ 261 (417)
T 3g7q_A 183 MICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGI-IFSEARPLWNPNIILCMSLSKLGLPGSRCGII 261 (417)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC-BCSCCCCCCCTTEEEEEESGGGTCTTSCCEEE
T ss_pred EEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccc-cccccccCCCCCEEEEEechhccCCCcceEEE
Confidence 8888999999999987 8999999999999999999997532111 11111111224567788999975555568877
Q ss_pred EEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhH----HH-HHHHHHHHHHHHH
Q 041829 313 WVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENL----QG-YIRNHIQLAKHFE 387 (486)
Q Consensus 313 ~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~----~~-~~~~~~~~a~~l~ 387 (486)
+.. +.... .+....... +.....+...++...+....+ .+ +.++..++.+++.
T Consensus 262 ~~~-~~~~~-~~~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (417)
T 3g7q_A 262 IAN-DKTIT-AIANMNGII--------------------SLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTI 319 (417)
T ss_dssp ECC-HHHHH-HHHHHHHHH--------------------CCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHH
T ss_pred EeC-HHHHH-HHHHhhcce--------------------eeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 653 33222 221100000 001122223333222211111 22 4455566777777
Q ss_pred HHHhc-CC--CeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeEC-C--------EeEEEEEe
Q 041829 388 GLVAQ-DL--RFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLS-G--------KYILRFAV 455 (486)
Q Consensus 388 ~~l~~-~~--~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-~--------~~~lRi~~ 455 (486)
+.|++ ++ ++++..+.....+.+.+...+ .+ ..++.+.|.+.|..+..+..+. + ..++|+++
T Consensus 320 ~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~-----~~--~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~ 392 (417)
T 3g7q_A 320 AIIRRYLSEERCLIHKPEGAIFLWLWFKDLP-----IT--TELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNY 392 (417)
T ss_dssp HHHHHHCCTTTCEEECCCBSSEEEEECTTCS-----SC--HHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEES
T ss_pred HHHHHhcccCCceeeCCCcceEEEEEcCCCC-----CC--HHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEe
Confidence 77765 55 477765444445556664311 11 2457777777774433332221 1 46999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041829 456 GAPLTEWRHVNAAWEVMQDKASALLA 481 (486)
Q Consensus 456 ~~~~~t~~di~~~~~~l~~~~~~l~~ 481 (486)
.. ++++|++++++|.++.+++.+
T Consensus 393 -~~--~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 393 -VP--EPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp -CS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred -cC--CHHHHHHHHHHHHHHHHHHHh
Confidence 43 899999999999999887764
No 175
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.84 E-value=4e-19 Score=174.81 Aligned_cols=278 Identities=9% Similarity=0.006 Sum_probs=187.3
Q ss_pred HHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHhCCCCC
Q 041829 121 VLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQ 200 (486)
Q Consensus 121 ~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~ 200 (486)
+.+++++++|.+++ ..++|+|||+++..++.+.. ++.|+++..+|.++...++..|.
T Consensus 55 lr~~la~~~~~~~~-------~i~~t~g~~~al~~~~~~l~-------------gd~Vi~~~p~~~~~~~~~~~~g~--- 111 (350)
T 3fkd_A 55 LRQMLAKRNSVDNN-------AILVTNGPTAAFYQIAQAFR-------------GSRSLIAIPSFAEYEDACRMYEH--- 111 (350)
T ss_dssp HHHHHHHHTTCCGG-------GEEEESHHHHHHHHHHHHTT-------------TCEEEEEESCCHHHHHHHHHTTC---
T ss_pred HHHHHHHHhCcCHH-------HEEEcCCHHHHHHHHHHHHC-------------CCEEEEeCCCcHHHHHHHHHcCC---
Confidence 44558999998764 58999999999888776532 34688888999999999999999
Q ss_pred CeEEEeC-CCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhC-CEEEeeccccchhcc
Q 041829 201 NFRVLKT-DSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNG-MWFHVDAAYAGSACI 278 (486)
Q Consensus 201 ~v~~v~~-~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g-~~lhvD~A~g~~~~~ 278 (486)
+++.+|+ ++.+ .+++ + .+.+|+++.++|+||.+-|++++.++++.++ .++++|++|+.+...
T Consensus 112 ~~~~v~~~~~~~--~~~~--------~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~ 175 (350)
T 3fkd_A 112 EVCFYPSNEDIG--EADF--------S------NMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTE 175 (350)
T ss_dssp EEEEEETTSCGG--GSCC--------T------TCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSS
T ss_pred eEEEEecCCccc--cCcc--------C------CCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccC
Confidence 9999999 6533 4444 1 2457888999999999999999999999876 799999999764432
Q ss_pred CccchhcccCCcCCCceeeecccccCC-CCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCc
Q 041829 279 CPEYRQYIDGVEEADSFNMNAHKWFLT-NFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRS 357 (486)
Q Consensus 279 ~~~~~~~~~~~~~aDs~~~~~hK~l~~-p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~ 357 (486)
.......+ .....+.++.+++|+++. ...+|+++. +++...........+ ....
T Consensus 176 ~~~~~~~~-~~~~~~i~~~S~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~-----------------------~~~~ 230 (350)
T 3fkd_A 176 EVIRPADI-KGRKNLVMVYSFSHAYGIPGLRIGYIVA-NKDFMKRVAAFSTPW-----------------------AVNA 230 (350)
T ss_dssp CCCCGGGG-TTCSSEEEEEESHHHHSCGGGCCEEEEC-CHHHHHHHHTTCCTT-----------------------CSCH
T ss_pred cchhhHHh-hcCCCEEEEecCchhccCcchheEeEEe-CHHHHHHHHHhCCCC-----------------------CCCH
Confidence 11111111 111344778899999984 456788877 444333221111110 1123
Q ss_pred HHHHHHHHHhChhh-HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHc-c
Q 041829 358 LKLWMVLRLYGLEN-LQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINS-T 435 (486)
Q Consensus 358 l~~~~~l~~~g~~g-~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~-~ 435 (486)
+..+++...+.... +.+.+++..++++++.+.|+++|++++. ++..+++.+++... ...++.+.|.+ .
T Consensus 231 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~l~~~L~~~~ 300 (350)
T 3fkd_A 231 LAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVH-PSGTTFFLLRLKKG---------TAAELKKYMLEEY 300 (350)
T ss_dssp HHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEEC-CCSSSEEEEEESSS---------CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEC-CCCCcEEEEECCCC---------CHHHHHHHHHHHC
Confidence 34444433332111 3333444458899999999999999875 55566666777531 12567788887 6
Q ss_pred CcEEEEee-eEC--CEeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041829 436 GKIFISHT-VLS--GKYILRFAVGAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 436 g~~~~~~~-~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 477 (486)
| +.+.+. .+. +..++|+++ + +++++++++++|+++.+
T Consensus 301 g-i~v~~g~~f~~~~~~~iRis~-~---~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 301 N-MLIRDASNFRGLDESYVRITT-Q---RPAQNQLFIKALETFLE 340 (350)
T ss_dssp C-EECEECTTSTTCCTTEEEEEC-C---CHHHHHHHHHHHHHHHT
T ss_pred C-EEEEeCccCCCCCCCEEEEEc-C---CHHHHHHHHHHHHHHHH
Confidence 7 555443 232 246899998 3 78999999999988764
No 176
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.84 E-value=3.6e-19 Score=176.80 Aligned_cols=286 Identities=13% Similarity=0.093 Sum_probs=178.7
Q ss_pred HHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCC-eEEEecCCC-chhHHHHHHHhCC
Q 041829 120 IVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEK-LVVYASDQT-HSALQKACQIGGI 197 (486)
Q Consensus 120 ~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~-~~v~~s~~~-H~s~~~a~~~~g~ 197 (486)
++.+++++++|.+ + ..++|+|||+++..++.+++..... +.++ +.|+++..+ |.+...+....+.
T Consensus 74 ~l~~~la~~~g~~-~-------~v~~~~g~t~a~~~~~~~~~~~~~~-----~~~g~~~vl~~~~~y~~~~~~~~~~~~~ 140 (375)
T 2eh6_A 74 ELAHKLVKHFWTE-G-------KVFFANSGTESVEAAIKLARKYWRD-----KGKNKWKFISFENSFHGRTYGSLSATGQ 140 (375)
T ss_dssp HHHHHHHHTSSSC-E-------EEEEESSHHHHHHHHHHHHHHHHHH-----TTCCCCEEEEEBTCCCCSSHHHHHHCBC
T ss_pred HHHHHHHhhcCCC-C-------eEEEeCchHHHHHHHHHHHHHHhcc-----CCCCCCEEEEECCCcCCCchhhhhhcCC
Confidence 3445689999984 3 4899999999999988765422100 0034 667666666 5444444443322
Q ss_pred C-----CC----CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----hHHHHHHHHHhCC
Q 041829 198 H-----PQ----NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP----LLALGNIAKSNGM 264 (486)
Q Consensus 198 g-----~~----~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~----l~~I~~ia~~~g~ 264 (486)
. .. .+..+|. +|+++|+++++++ +.+|+++.+++++|.+.| +++|.++|+++|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~------~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~ 207 (375)
T 2eh6_A 141 PKFHKGFEPLVPGFSYAKL-------NDIDSVYKLLDEE------TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDV 207 (375)
T ss_dssp GGGTTTTCSCCSSEEEECT-------TCHHHHHTTCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTC
T ss_pred ccccCCCCCCCCCceeCCC-------chHHHHHHHhcCC------eEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCC
Confidence 0 00 1333331 5899999888642 567888889999999977 9999999999999
Q ss_pred EEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCC
Q 041829 265 WFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDY 344 (486)
Q Consensus 265 ~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~ 344 (486)
++|+|++|+++............+. ..|.++++ |+++.+.++|+++++++ +.+.+... .+.
T Consensus 208 ~li~De~~~~~~~~~~~~~~~~~~~-~~d~~s~S--K~~~~g~~~G~~~~~~~--~~~~~~~~-~~~------------- 268 (375)
T 2eh6_A 208 LLIIDEVQTGIGRTGEFYAYQHFNL-KPDVIALA--KGLGGGVPIGAILAREE--VAQSFTPG-SHG------------- 268 (375)
T ss_dssp EEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTTSCCEEEEEEHH--HHTTCCTT-SCC-------------
T ss_pred EEEEeccccCCCCCCcchhhhhcCC-CCCEEEEc--ccccCCCCeEEEEEcHH--HHhhhcCC-CCC-------------
Confidence 9999999986322111110001111 37888776 88888888999998752 22222110 000
Q ss_pred CCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHH
Q 041829 345 KDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKL 424 (486)
Q Consensus 345 ~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~ 424 (486)
. + . ....+...++...+. .+.+..++..++++++.+.|++++...+ ++..+++.+.+...
T Consensus 269 ~--~--~--~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~g~~~~~~~~~~---------- 328 (375)
T 2eh6_A 269 S--T--F--GGNPLACRAGTVVVD--EVEKLLPHVREVGNYFKEKLKELGKGKV--KGRGLMLGLELERE---------- 328 (375)
T ss_dssp C--S--S--TTCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSSEE--EEETTEEEEECSSC----------
T ss_pred C--C--C--CCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCc--eEEEEEEEEEEcCc----------
Confidence 0 0 0 112333333333221 1126778888899999999998754222 23445667766421
Q ss_pred HHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 425 NHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 425 ~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
..++.+.|.++| +.+.+. +..++|+++ +..++++|+++++++|+++
T Consensus 329 ~~~~~~~l~~~g-i~~~~~---~~~~iRi~~-~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 329 CKDYVLKALEKG-LLINCT---AGKVLRFLP-PLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp CHHHHHHHHHTT-EECEEE---TTTEEEECC-CTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CEEecC---CCCEEEEEC-CCCCCHHHHHHHHHHHHHh
Confidence 145667777777 444432 345899998 6788999999999999865
No 177
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.84 E-value=3.8e-18 Score=172.41 Aligned_cols=317 Identities=12% Similarity=0.085 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHc-CCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHhC
Q 041829 118 EMIVLDWLAKLL-KLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIGG 196 (486)
Q Consensus 118 e~~~~~~la~l~-g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g 196 (486)
..++.+.+++++ | +.. ...++|+||++|+..++..++... + ++.+|+.+...|.+...++...|
T Consensus 86 ~~~l~~~la~~~~~-~~~------~~v~~~~g~~~a~~~~~~~a~~~~-~-------~~~vi~~~p~y~~~~~~~~~~~g 150 (426)
T 1sff_A 86 YLELCEIMNQKVPG-DFA------KKTLLVTTGSEAVENAVKIARAAT-K-------RSGTIAFSGAYHGRTHYTLALTG 150 (426)
T ss_dssp HHHHHHHHHHHSSC-SSC------EEEEEESSHHHHHHHHHHHHHHHH-T-------CCEEEEETTCCCCSSHHHHHHSS
T ss_pred HHHHHHHHHHhCCc-ccc------cEEEEeCchHHHHHHHHHHHHHhh-C-------CCeEEEECCCcCCCchHhhhhcC
Confidence 334444588888 4 220 148999999999999988654321 1 44455545556666767777766
Q ss_pred CC--------C--CCeEEEeCCC---CCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----hHHHHHHH
Q 041829 197 IH--------P--QNFRVLKTDS---STNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP----LLALGNIA 259 (486)
Q Consensus 197 ~g--------~--~~v~~v~~~~---~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~----l~~I~~ia 259 (486)
.. . ..++.+|++. +..+.+|+++|++++++.. .+..+.+|+++...+++|.+.+ +++|.++|
T Consensus 151 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~ 229 (426)
T 1sff_A 151 KVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA-APEDIAAIVIEPVQGEGGFYASSPAFMQRLRALC 229 (426)
T ss_dssp CCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC-CGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHH
T ss_pred CccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc-CCCceEEEEEecccCCCCcccCCHHHHHHHHHHH
Confidence 51 0 1277788763 1124689999999997420 1112456666554444997777 99999999
Q ss_pred HHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccC
Q 041829 260 KSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQAN 339 (486)
Q Consensus 260 ~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~ 339 (486)
++||+++++|++|+++....+.......++ ..|.+ +++|+++....+|+++.++. +.+.+... .+.
T Consensus 230 ~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~di~--s~sK~~~~GlriG~~~~~~~--~~~~l~~~-~~~-------- 295 (426)
T 1sff_A 230 DEHGIMLIADEVQSGAGRTGTLFAMEQMGV-APDLT--TFAKSIAGGFPLAGVTGRAE--VMDAVAPG-GLG-------- 295 (426)
T ss_dssp HHHTCEEEEECTTTTTTTTSSSSGGGGTTS-CCSEE--EECGGGGTSSCCEEEEEEHH--HHTTSCTT-SBC--------
T ss_pred HHcCCEEEEechhhccCcccchhhhhhcCC-CCCEE--EEcccccCCCceEEEEEcHH--HHhhhccC-CcC--------
Confidence 999999999999986432111110001111 35655 55699986445799988752 22222110 000
Q ss_pred CccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhc----CCCeEEecCCCceEEEEEecCCC
Q 041829 340 MVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQ----DLRFEVVTPRIFSLVCFRLLPPH 415 (486)
Q Consensus 340 ~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~v~f~~~~~~ 415 (486)
. + ..........+.++++.+..+ ++.++..++++++++.|++ ++.+..+ ++..+++.+.+....
T Consensus 296 -----~--~-~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~ 363 (426)
T 1sff_A 296 -----G--T-YAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEKHPEIGDV-RGLGAMIAIELFEDG 363 (426)
T ss_dssp -----C--S-SSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTCTTEEEE-EEETTEEEEEEBGGG
T ss_pred -----c--C-CCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCc
Confidence 0 0 001111223344444544332 3456677778888877765 4444333 234567777774210
Q ss_pred CCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 416 NDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 416 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
...........++.+.|.++| +.+.+... ...++|+++ +..++++|+++++++|+++.+++
T Consensus 364 ~~~~~~~~~~~~l~~~l~~~g-i~v~~~~~-~~~~iRi~~-~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 364 DHNKPDAKLTAEIVARARDKG-LILLSCGP-YYNVLRILV-PLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp CTTSBCHHHHHHHHHHHHHTT-EECEEEST-TSCEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHCC-cEEecCCC-CCCEEEEEC-CccCCHHHHHHHHHHHHHHHHHH
Confidence 000001233467888888887 44444322 235899998 77889999999999999987654
No 178
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.83 E-value=8.1e-19 Score=177.28 Aligned_cols=312 Identities=9% Similarity=0.019 Sum_probs=195.3
Q ss_pred cc-ccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHH--HHHHHHHHHHHHHhCccCCC--------C
Q 041829 107 SW-ITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVL--VVLLAARDKALKRVGKNSLE--------K 175 (486)
Q Consensus 107 ~~-~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~--~al~~a~~~~~~~~~~~~~~--------~ 175 (486)
.| ...++..++++. ++++++.+++ ..++|+|+++++. .++.+..... + + +
T Consensus 64 ~Yp~~~~g~~~lr~~----ia~~~~~~~~-------~i~~t~G~~~al~~~~~~~~l~~~~-~-------g~~~~~~~~g 124 (423)
T 3ez1_A 64 NYPGGVAGLPSARAL----FAGYLDVKAE-------NVLVWNNSSLELQGLVLTFALLHGV-R-------GSTGPWLSQT 124 (423)
T ss_dssp SSCSCTTCCHHHHHH----HHHHTTSCGG-------GEEECSSCHHHHHHHHHHHHHHTCC-T-------TCSSCGGGGC
T ss_pred CCCCCCCChHHHHHH----HHHHhCCChh-------hEEEeCCcHHHHHHHHHHHHHhccC-C-------CccccccCCC
Confidence 44 444556777777 7777787764 5899999999886 5555433200 0 2 4
Q ss_pred eEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEe-cCCccccccCChH-
Q 041829 176 LVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCAT-VGTTSSTAVDPLL- 253 (486)
Q Consensus 176 ~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~-~~~t~tG~id~l~- 253 (486)
+.|+++..+|..+...++..|. +++.+|++.+ .+|+++|++++++. ..+.+|+++ .++|+||.+-|.+
T Consensus 125 d~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~---g~d~~~l~~~l~~~----~~~~~v~~~~~~~NPtG~~~~~~~ 194 (423)
T 3ez1_A 125 PKMIVTVPGYDRHFLLLQTLGF---ELLTVDMQSD---GPDVDAVERLAGTD----PSVKGILFVPTYSNPGGETISLEK 194 (423)
T ss_dssp CEEEEEESCCHHHHHHHHHHTC---EEEEEEEETT---EECHHHHHHHHHSC----TTEEEEEECSSSCTTTCCCCCHHH
T ss_pred CEEEEcCCCcHHHHHHHHHcCC---EEEeccCCCC---CCCHHHHHHHHhhC----CCceEEEECCCCCCCCCcCCCHHH
Confidence 7888999999999999999999 9999999854 49999999999521 124566544 7899999998876
Q ss_pred --HHHHHH-HHhCCEEEeeccccchhccC-c--cchhccc-----CCcCCCceeeecccccCCCCcceEEEEeCchHHHH
Q 041829 254 --ALGNIA-KSNGMWFHVDAAYAGSACIC-P--EYRQYID-----GVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQ 322 (486)
Q Consensus 254 --~I~~ia-~~~g~~lhvD~A~g~~~~~~-~--~~~~~~~-----~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~ 322 (486)
+|+++| +++|+++++|++|+...+.. . ....... +....+.+..+++|++.....+|+++.++ ....
T Consensus 195 l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~-~~~~- 272 (423)
T 3ez1_A 195 ARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSE-DNIR- 272 (423)
T ss_dssp HHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECH-HHHH-
T ss_pred HHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCH-HHHH-
Confidence 888888 99999999999998432221 0 1101110 11234577889999876667788877754 2222
Q ss_pred HhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhCh------hhHHHHHHHHHHHHH----HHHHHHhc
Q 041829 323 SLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGL------ENLQGYIRNHIQLAK----HFEGLVAQ 392 (486)
Q Consensus 323 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~------~g~~~~~~~~~~~a~----~l~~~l~~ 392 (486)
.+.....+ .+.....+..+++...+.. +.+++..+...+..+ .|.+.+.+
T Consensus 273 ~~~~~~~~--------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 332 (423)
T 3ez1_A 273 WLSKYLGA--------------------QSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGE 332 (423)
T ss_dssp HHHHHHHH--------------------SCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhh--------------------hccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 22110000 0001122233333332222 233333333333444 44444545
Q ss_pred CC-CeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEe-ee-E-----CCEeEEEEEecCCCCCHHH
Q 041829 393 DL-RFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISH-TV-L-----SGKYILRFAVGAPLTEWRH 464 (486)
Q Consensus 393 ~~-~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~-~-----~~~~~lRi~~~~~~~t~~d 464 (486)
++ ++++..+.....+.+.+... ....+.+.+.+.| +.+.+ .. + .+..++|+++ ... ++++
T Consensus 333 ~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~g-v~v~~~g~~~~~~~~~~~~~iRis~-~~~-~~~~ 400 (423)
T 3ez1_A 333 GGEYATWTLPKGGYFISLDTAEP---------VADRVVKLAEAAG-VSLTPAGATYPAGQDPHNRNLRLAP-TRP-PVEE 400 (423)
T ss_dssp TTSSEEECCCSBSSCEEEEESSS---------CHHHHHHHHHHTT-EECCCTTTTSSTTCCSSSCEEEECC-SSS-CHHH
T ss_pred CCCceEEeCCCccEEEEEECCCC---------cHHHHHHHHHHCC-cEEecCcccccCCCCCCCCeEEEEc-CCC-CHHH
Confidence 54 47766554555666776531 1245666677777 55544 21 1 2357999999 433 9999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041829 465 VNAAWEVMQDKASALLA 481 (486)
Q Consensus 465 i~~~~~~l~~~~~~l~~ 481 (486)
+++++++|.++.+++..
T Consensus 401 i~~~~~~l~~~l~~~~~ 417 (423)
T 3ez1_A 401 VRTAMQVVAACIRLATE 417 (423)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887654
No 179
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.83 E-value=1.4e-19 Score=182.27 Aligned_cols=323 Identities=9% Similarity=0.010 Sum_probs=201.3
Q ss_pred HHHHHHHHHH-hcCcC-ccccccChhhHHHHHHHHHHHHHHcCC--CCCCcCCCCCCeEE--cCchhHHHHHHHHHHHHH
Q 041829 90 AGFLGEMLSA-GLNIV-GFSWITSPAATELEMIVLDWLAKLLKL--PEDFLSSGQGGGVI--QGTASEAVLVVLLAARDK 163 (486)
Q Consensus 90 ~~~~~~~l~~-~~n~~-~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~~~--t~ggt~a~~~al~~a~~~ 163 (486)
+..+.+.+.. .+... ...|...++..++++.+.+|+.+..|. +++ ..++ |+|||+|+..++...+..
T Consensus 49 ~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~-------~i~~~~t~g~~~a~~~~~~~~~~~ 121 (412)
T 1yaa_A 49 LPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQED-------RVISVQSLSGTGALHISAKFFSKF 121 (412)
T ss_dssp CHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTT-------CEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcc-------eEEEEeccchHhHHHHHHHHHHHh
Confidence 3445555655 55432 234545566788999977777655553 222 4788 999999988775433221
Q ss_pred HHHHhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeC-CCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecC
Q 041829 164 ALKRVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKT-DSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVG 242 (486)
Q Consensus 164 ~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~-~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~ 242 (486)
. +++.|+++..+|.++...++..|+ +++.+|. +++ ++.+|+++|++++++.. ....+++.+.+
T Consensus 122 --~-------~gd~Vl~~~p~~~~~~~~~~~~g~---~~~~v~~~~~~-~~~~d~~~l~~~l~~~~---~~~~~~~~~~p 185 (412)
T 1yaa_A 122 --F-------PDKLVYLSKPTWANHMAIFENQGL---KTATYPYWANE-TKSLDLNGFLNAIQKAP---EGSIFVLHSCA 185 (412)
T ss_dssp --C-------TTCCEEEEESCCTTHHHHHHTTTC---CEEEEECEETT-TTEECHHHHHHHHHHSC---TTCEEEEECSS
T ss_pred --C-------CCCEEEEeCCCCccHHHHHHHcCc---eEEEEeeecCC-CCccCHHHHHHHHHhCC---CCCEEEEeCCC
Confidence 1 566788888999999999999999 9999998 533 46899999999997531 11245566999
Q ss_pred CccccccCC---hHHHHHHHHHhCCEEEeeccccchhccC---c--cchhcccCCcC---CCceeeecccccCCC-Ccce
Q 041829 243 TTSSTAVDP---LLALGNIAKSNGMWFHVDAAYAGSACIC---P--EYRQYIDGVEE---ADSFNMNAHKWFLTN-FDCS 310 (486)
Q Consensus 243 ~t~tG~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~---~--~~~~~~~~~~~---aDs~~~~~hK~l~~p-~~~g 310 (486)
+|+||.+-+ +++|+++|+++|+++++|++|+++.... + ..... ..... -+.++.+++|.++.+ ..+|
T Consensus 186 ~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~GlriG 264 (412)
T 1yaa_A 186 HNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLG-VEKLSTVSPVFVCQSFAKNAGMYGERVG 264 (412)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHH-HHHTTTTCCEEEEEECTTTSCCGGGCEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHH-HhcCCCCcceEEEeccCCCCCCcCCcce
Confidence 999999954 6788999999999999999997653321 0 11111 11111 235677889998742 3368
Q ss_pred EEE--E----eCchH---HHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--C------hhhHH
Q 041829 311 ALW--V----KDRNT---LIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--G------LENLQ 373 (486)
Q Consensus 311 ~l~--~----r~~~~---~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g------~~g~~ 373 (486)
+++ . +++.. +...+.. .... ..+ ....+..+++.+.+ + .+.++
T Consensus 265 ~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~----------------~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 324 (412)
T 1yaa_A 265 CFHLALTKQAQNKTIKPAVTSQLAK---IIRS----------------EVS-NPPAYGAKIVAKLLETPELTEQWHKDMV 324 (412)
T ss_dssp EEEEECCSCTTHHHHHHHHHHHHHH---HHHT----------------TTS-SCCHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHH---HHhh----------------ccC-CCChHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 887 4 24331 2211111 0000 000 01222333333222 1 24677
Q ss_pred HHHHHHHHHHHHHHHHHhcCC---CeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeE
Q 041829 374 GYIRNHIQLAKHFEGLVAQDL---RFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYI 450 (486)
Q Consensus 374 ~~~~~~~~~a~~l~~~l~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~ 450 (486)
++.++..++++++.+.|++++ ++++. ++..+++.|. .. +. ..+...+.+.| +.+.+ +
T Consensus 325 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~--~~-------~~--~~~~~~l~~~g-i~v~~-------~ 384 (412)
T 1yaa_A 325 TMSSRITKMRHALRDHLVKLGTPGNWDHI-VNQCGMFSFT--GL-------TP--QMVKRLEETHA-VYLVA-------S 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCTHH-HHCCSSEEEC--CC-------CH--HHHHHHHHHHC-EECCT-------T
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCeeee-ccCceEEEee--CC-------CH--HHHHHHHHhCC-EEecc-------C
Confidence 888888899999999998874 36654 3344444442 11 11 23433333456 55554 5
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 451 LRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 451 lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
+|+++. ..+++++++++++|+++.+.
T Consensus 385 ~Ris~~--~~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 385 GRASIA--GLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp SEEEGG--GCCTTTHHHHHHHHHHHHHH
T ss_pred cEEEEc--cCCHhHHHHHHHHHHHHHHh
Confidence 899993 24899999999999988753
No 180
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.83 E-value=3.5e-19 Score=178.66 Aligned_cols=285 Identities=14% Similarity=0.123 Sum_probs=187.0
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHH
Q 041829 110 TSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQ 189 (486)
Q Consensus 110 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 189 (486)
..|...++|+. +++++|.+. .+++++|++|+..++. ... +++.|+++...|.+..
T Consensus 65 ~~p~~~~l~~~----la~~~g~~~---------~i~~~sG~~ai~~~~~-l~~-----------~gd~Vl~~~~~y~~~~ 119 (403)
T 3cog_A 65 GNPTRNCLEKA----VAALDGAKY---------CLAFASGLAATVTITH-LLK-----------AGDQIICMDDVYGGTN 119 (403)
T ss_dssp -CHHHHHHHHH----HHHHHTCSE---------EEEESCHHHHHHHHHT-TSC-----------TTCEEEEESSCCHHHH
T ss_pred CCchHHHHHHH----HHHHhCCCc---------EEEECCHHHHHHHHHH-HhC-----------CCCEEEEeCCCcchHH
Confidence 34666777777 788888763 4666667888777665 321 5678888999998865
Q ss_pred HH----HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhC-C
Q 041829 190 KA----CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNG-M 264 (486)
Q Consensus 190 ~a----~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g-~ 264 (486)
.. ++..|+ +++.+|.+ |+++|++++++. +.+|+++.++|++|.+.|+++|+++|+++| +
T Consensus 120 ~~~~~~~~~~G~---~v~~v~~~-------d~~~l~~~i~~~------t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~ 183 (403)
T 3cog_A 120 RYFRQVASEFGL---KISFVDCS-------KIKLLEAAITPE------TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDI 183 (403)
T ss_dssp HHHHHTGGGGTC---EEEEECTT-------SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHcCC---EEEEECCC-------CHHHHHHhcCcC------CeEEEEECCCCCCCeeeCHHHHHHHHHHcCCC
Confidence 54 346788 88888764 889999888643 468889999999999999999999999999 9
Q ss_pred EEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCc--ceEEEEeCchHHHHHhcCCcccccccccccCCcc
Q 041829 265 WFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFD--CSALWVKDRNTLIQSLSTNPEFLKNKASQANMVV 342 (486)
Q Consensus 265 ~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~--~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~ 342 (486)
++++|++|+.+....+ .. .++|.++.++||++++|.+ +|+++.+++..... +.. +...
T Consensus 184 ~livD~~~~~~~~~~~-~~------~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~-l~~---~~~~--------- 243 (403)
T 3cog_A 184 ILVVDNTFMSPYFQRP-LA------LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNR-LRF---LQNS--------- 243 (403)
T ss_dssp EEEEECTTTCTTTCCT-TT------TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHH-HHH---HHHH---------
T ss_pred EEEEECCCcccccCCc-cc------cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHH-HHH---HHHh---------
Confidence 9999999987653221 11 1689999999999998876 58888876553322 111 0000
Q ss_pred CCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEe--------------cC---CCce
Q 041829 343 DYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVV--------------TP---RIFS 405 (486)
Q Consensus 343 ~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~--------------~~---~~~~ 405 (486)
.+.....+..|++++.+ +.+..++++..+++..+.+.+++.+.++-+ .+ ...+
T Consensus 244 --------~g~~~~~~~~~~~~~~l--~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~ 313 (403)
T 3cog_A 244 --------LGAVPSPIDCYLCNRGL--KTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTG 313 (403)
T ss_dssp --------HCCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCS
T ss_pred --------cCCCCCHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCce
Confidence 01112345666666544 345566677777777788887776544321 11 1256
Q ss_pred EEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEE------------eee-----E-------CC--EeEEEEEecCCC
Q 041829 406 LVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFIS------------HTV-----L-------SG--KYILRFAVGAPL 459 (486)
Q Consensus 406 ~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~------------~~~-----~-------~~--~~~lRi~~~~~~ 459 (486)
+++|.+.. ..+...++++ +.+.+... +.. . .| ...+|+++ +..
T Consensus 314 ~~~~~l~~-------~~~~~~~~l~---~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSv-g~e 382 (403)
T 3cog_A 314 MVTFYIKG-------TLQHAEIFLK---NLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSV-GLE 382 (403)
T ss_dssp EEEEEESS-------CHHHHHHHHH---HCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEEC-CSS
T ss_pred EEEEEecC-------CHHHHHHHHH---hCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEe-CCC
Confidence 88888753 1122233333 33432111 100 0 02 36899999 667
Q ss_pred CCHHHHHHHHHHHHHHH
Q 041829 460 TEWRHVNAAWEVMQDKA 476 (486)
Q Consensus 460 ~t~~di~~~~~~l~~~~ 476 (486)
+++++|+.+.++|+++.
T Consensus 383 ~~~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 383 DEEDLLEDLDQALKAAH 399 (403)
T ss_dssp CHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 77888888888776543
No 181
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.83 E-value=3.1e-18 Score=173.91 Aligned_cols=318 Identities=10% Similarity=-0.018 Sum_probs=187.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCC-CCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHH
Q 041829 113 AATELEMIVLDWLAKLLKLPE-DFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKA 191 (486)
Q Consensus 113 ~~~~le~~~~~~la~l~g~~~-~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a 191 (486)
...+...++.++++++++... + ..++|+|||+|+..++.+++... + ++.+|+.....|.+...+
T Consensus 83 ~~~~~~~~l~~~la~~~~~~~~~-------~v~~~~ggsea~~~al~~~~~~~-~-------~~~vi~~~~~yhg~~~~~ 147 (439)
T 3dxv_A 83 ASNAPAVTLAERLLASFPGEGTH-------KIWFGHSGSDANEAAYRAIVKAT-G-------RSGVIAFAGAYHGCTVGS 147 (439)
T ss_dssp SEEHHHHHHHHHHHHTTTCTTTE-------EEEEESSHHHHHHHHHHHHHHHH-S-------CCEEEEETTCCCCSSHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCCC-------EEEEeCCHHHHHHHHHHHHHHHh-C-------CCEEEEECCCCCCCcHHH
Confidence 345677778888999985433 2 48999999999999998876532 0 345566666667766665
Q ss_pred HHHhCCCC--C---------CeEEEeCCCCCCCcc-----CHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----
Q 041829 192 CQIGGIHP--Q---------NFRVLKTDSSTNYSL-----SPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP---- 251 (486)
Q Consensus 192 ~~~~g~g~--~---------~v~~v~~~~~~~~~i-----d~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~---- 251 (486)
+...|... - .+..+|.+.. +.- |+++|+++|++. ....+.+|+++...+++|.+.|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~ 223 (439)
T 3dxv_A 148 MAFSGHSVQADAAKADGLILLPYPDPYRPY--RNDPTGDAILTLLTEKLAAV--PAGSIGAAFIEPIQSDGGLIVPPDGF 223 (439)
T ss_dssp HCC-------------CEEEECCCCSSSCB--TTBTTSHHHHHHHHHHHHTS--CTTCEEEEEECSSBSTTTSBCCCTTH
T ss_pred HhhcCCCchhhccccCCCCCCcEEcCCCcc--cccccHHHHHHHHHHHHHhc--CCCCEEEEEEccccCCCCCccCCHHH
Confidence 55444310 0 0123443321 122 799999998521 1234567888888888999988
Q ss_pred hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccc
Q 041829 252 LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFL 331 (486)
Q Consensus 252 l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl 331 (486)
+++|.++|++||+++++|++|+++......+.....++ ..|.++ +.|.+++....|+++.+. + +.+.+... .
T Consensus 224 l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~-~~di~s--~sK~~~~G~riG~~~~~~-~-~~~~~~~~---~ 295 (439)
T 3dxv_A 224 LRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGF-VPDILV--LGKGLGGGLPLSAVIAPA-E-ILDCASAF---A 295 (439)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTC-CCSEEE--ECGGGGTTSCCEEEEEEH-H-HHTSCSSS---S
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCC-CCCEEE--EcchhcCCcceEEEEECH-H-HHhhhcCC---C
Confidence 99999999999999999999986422111011111111 356664 459988656688887754 2 22211110 0
Q ss_pred cccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhc----CCCeEEecCCCceEE
Q 041829 332 KNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQ----DLRFEVVTPRIFSLV 407 (486)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~v 407 (486)
...+. ...+...+++..+..-.-++++++..++.+++++.|++ ++.+..+ ++...++
T Consensus 296 -----------------~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~ 356 (439)
T 3dxv_A 296 -----------------MQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDI-RGRGLAC 356 (439)
T ss_dssp -----------------CCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEE
T ss_pred -----------------cCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEE
Confidence 00111 22333333333321100134455666666666666654 5555443 3344566
Q ss_pred EEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 408 CFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
.+.+...............++.+.+.++| +.+.+... ...++|+++ +...|++++++++++|+++.+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~~~-~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 357 GMELVCDRQSREPARAETAKLIYRAYQLG-LVVYYVGM-NGNVLEFTP-PLTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp EEEEEEETTTTEECHHHHHHHHHHHHHHT-EECEEEST-TSCEEEECC-CTTCCHHHHHHHHHHHHHHHHTG
T ss_pred EEEEecCccccCCCHHHHHHHHHHHHHCC-cEEeecCC-CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 66653211000012334567788888888 44444321 235899998 77889999999999999988765
No 182
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.83 E-value=2.8e-18 Score=174.65 Aligned_cols=359 Identities=10% Similarity=0.010 Sum_probs=213.6
Q ss_pred CHHHHHhhHHHHHHhhcCCCCcCCCCcccccCCCCCCHHHHHHHHHHHhc---CcCccccccChhhHHHHHHHHHHHHHH
Q 041829 52 SLQNVLDGYIDIQEKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGL---NIVGFSWITSPAATELEMIVLDWLAKL 128 (486)
Q Consensus 52 ~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~---n~~~~~~~~~~~~~~le~~~~~~la~l 128 (486)
....+.+ .++..-.+...+.....|+.+-.. +.....+.+.+.... ......|....+..++.+++.+|+
T Consensus 35 ~i~~~~~---~~~~~~~~~~i~l~~g~~~d~~~~-~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l--- 107 (448)
T 3meb_A 35 AILNLTV---LYNADTNPKKVNLGVGAYRDESGK-PWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLM--- 107 (448)
T ss_dssp TTHHHHH---HHHHCCCTTCEEESSCCCCCTTSC-CCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHH---
T ss_pred hHHHHHH---HHHhCCCCCeEEeecccccCCCCC-EechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHh---
Confidence 3455555 555544444444444445444323 223344444433332 122344555567778888866555
Q ss_pred cCCCCCCcCCCCCCeEE--cCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHH----HhCCCCCCe
Q 041829 129 LKLPEDFLSSGQGGGVI--QGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQ----IGGIHPQNF 202 (486)
Q Consensus 129 ~g~~~~~~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~----~~g~g~~~v 202 (486)
+|.+.... .....++ |+|||+|+..++...... . +++.|+++..+|.++...++ ..|+ ++
T Consensus 108 ~g~~~~~~--~~~~i~~~~t~ggt~al~l~~~~~~~~--~-------~gd~Vlv~~p~~~~~~~~~~~~~~~~G~---~v 173 (448)
T 3meb_A 108 FGKDSKAA--QEGRIASCQSLSGTGSLHIGFEFLHLW--M-------PKAEFYMPSTTWPNHYGIYDKVFNKLKV---PY 173 (448)
T ss_dssp HCTTCHHH--HTTCEEEEEESHHHHHHHHHHHHHHHH--C-------TTCCEEEESSCCTHHHHHHHHHHCTTTS---CC
T ss_pred cCCCcccc--CcCcEEEEECCcHHHHHHHHHHHHHHh--C-------CCCEEEECCCCCHhHHHHHHhhHHhCCC---eE
Confidence 36651000 0015788 999999987644322111 1 56778899999999999999 8999 99
Q ss_pred EEEeC-CCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC---hHHHHHHHHHhCCEEEeeccccchhcc
Q 041829 203 RVLKT-DSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP---LLALGNIAKSNGMWFHVDAAYAGSACI 278 (486)
Q Consensus 203 ~~v~~-~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~ 278 (486)
+.+|+ ++++++.+|+++|++++++.. ....+++.+.++|+||.+-+ +++|+++|+++|+++++|.+|+++...
T Consensus 174 ~~~~~~~~~~~~~~d~e~l~~~l~~~~---~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~ 250 (448)
T 3meb_A 174 KEYTYLRKDGELEIDFSNTKKDIQSAP---EKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATG 250 (448)
T ss_dssp EEECCBCTTSCSSBCHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSS
T ss_pred EEEeccccccCCCcCHHHHHHHHHhCC---CCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCC
Confidence 99998 543147999999999997621 12467888899999999966 556999999999999999999875532
Q ss_pred Cc-----cchhcccCCcCCC-ceeeecccccCCC-CcceEE--EE--------eCch---HHHHHhcCCccccccccccc
Q 041829 279 CP-----EYRQYIDGVEEAD-SFNMNAHKWFLTN-FDCSAL--WV--------KDRN---TLIQSLSTNPEFLKNKASQA 338 (486)
Q Consensus 279 ~~-----~~~~~~~~~~~aD-s~~~~~hK~l~~p-~~~g~l--~~--------r~~~---~~~~~~~~~~~yl~~~~~~~ 338 (486)
.. ...... .. ..+ .++.+++|.++.| ..+|++ +. .++. .+...+.....+
T Consensus 251 ~~~~~~~~~~~~~-~~-~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------- 320 (448)
T 3meb_A 251 SFEADAFAVRMFV-DA-GVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRK-------- 320 (448)
T ss_dssp CHHHHTHHHHHHH-HT-TCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred CcccCchhHHHHh-hc-CCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhc--------
Confidence 10 011110 11 223 5588899998754 347777 44 3331 111111100000
Q ss_pred CCccCCCCCccCCCCCCCcHHHHHHHHHhCh--------hhHHHHHHHHHHHHHHHHHHHhcC--CC------eEEecCC
Q 041829 339 NMVVDYKDWQIPLGRRFRSLKLWMVLRLYGL--------ENLQGYIRNHIQLAKHFEGLVAQD--LR------FEVVTPR 402 (486)
Q Consensus 339 ~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~--------~g~~~~~~~~~~~a~~l~~~l~~~--~~------~~~~~~~ 402 (486)
.......+..+++...+.. +.++++.++..++++++.+.|+++ |+ ++.. .|
T Consensus 321 ------------~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~-~~ 387 (448)
T 3meb_A 321 ------------TWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHI-LT 387 (448)
T ss_dssp ------------TTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHH-HH
T ss_pred ------------ccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCccccccee-CC
Confidence 0001122334444433322 346778888899999999999887 44 4433 23
Q ss_pred CceEEEEEecCCCCCcccchHHHHHHHHHHHc-cCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 403 IFSLVCFRLLPPHNDEDHGNKLNHKLLDDINS-TGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 403 ~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
..++++|.-.+ .++...+.+ .| +++.+.. .|++++ . .++++|++++++|.++.++
T Consensus 388 ~~g~~~~~~~~------------~~~~~~ll~~~g-V~v~~G~------gRis~a-~-~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 388 AIGMFTFTGLT------------PEHVDYLKEKWS-IYLVKAG------GRMSMC-G-LTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp CCSSEEECCCC------------HHHHHHHHHHHC-EEECSGG------GEEEGG-G-CCTTTHHHHHHHHHHHHHH
T ss_pred CceEEEecCCC------------HHHHHHHHHhCC-EEEeCCC------cEEEEe-c-CCHHHHHHHHHHHHHHHHh
Confidence 34444442111 234444543 45 5555532 299983 2 2556799999999988763
No 183
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.82 E-value=2.9e-19 Score=178.70 Aligned_cols=320 Identities=12% Similarity=0.044 Sum_probs=197.7
Q ss_pred HHHHHHHHHhcCc-CccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEE--cCchhHHHHHHHHHHHHHHHHH
Q 041829 91 GFLGEMLSAGLNI-VGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVI--QGTASEAVLVVLLAARDKALKR 167 (486)
Q Consensus 91 ~~~~~~l~~~~n~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~~ 167 (486)
..+.+.+...+.. ....|....+..++++++.+++... +.+.+ ..++ |+|||+|+..++.+++...
T Consensus 47 ~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~-------~v~~~~~~g~~~a~~~~~~~~~~~~--- 115 (394)
T 2ay1_A 47 RAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD-GLKSE-------TTATLATVGGTGALRQALELARMAN--- 115 (394)
T ss_dssp HHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG-GCCGG-------GEEEEEEEHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCC-CCCcc-------cEEEEecCCchhHHHHHHHHHHhcC---
Confidence 4445555444322 2334544556788888866665322 22333 4777 9999999998887665421
Q ss_pred hCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccc
Q 041829 168 VGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSST 247 (486)
Q Consensus 168 ~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG 247 (486)
+++.|+++..+|.++...++..|. +++.+|.+..+++.+|+++|++++++. .....+++++.++|+||
T Consensus 116 ------~gd~vl~~~p~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~~~~~~nptG 183 (394)
T 2ay1_A 116 ------PDLRVFVSDPTWPNHVSIMNFMGL---PVQTYRYFDAETRGVDFEGMKADLAAA---KKGDMVLLHGCCHNPTG 183 (394)
T ss_dssp ------TTCCEEEEESCCHHHHHHHHHHTC---CEEEEECEETTTTEECHHHHHHHHHTC---CTTCEEEEESSSCTTTC
T ss_pred ------CCCEEEEcCCCChhHHHHHHHcCC---ceEEEecccccCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCC
Confidence 455688888899999999999999 999999863234789999999998653 11235677799999999
Q ss_pred ccCC---hHHHHHHHHHhCCEEEeeccccchhccC--c--cchhcccCCcCCC-ceeeecccccCCC-CcceEEEE--eC
Q 041829 248 AVDP---LLALGNIAKSNGMWFHVDAAYAGSACIC--P--EYRQYIDGVEEAD-SFNMNAHKWFLTN-FDCSALWV--KD 316 (486)
Q Consensus 248 ~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~--~--~~~~~~~~~~~aD-s~~~~~hK~l~~p-~~~g~l~~--r~ 316 (486)
.+-| +++|+++|+++|+++++|++|+++.... + ..... ... ..+ .+..+++|+++.| ..+|++++ .+
T Consensus 184 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~-~~~~i~~~s~sK~~~~~G~riG~~~~~~~~ 261 (394)
T 2ay1_A 184 ANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLI-ASR-IPEVLIAASCSKNFGIYRERTGCLLALCAD 261 (394)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHH-HHH-CSSEEEEEECTTTTTCGGGCEEEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHH-hhc-CCCEEEEEeccCCCcCcCCccceEEEEeCC
Confidence 9965 6688999999999999999998654310 0 01111 111 223 4566889999743 34688887 34
Q ss_pred chHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC--------hhhHHHHHHHHHHHHHHHHH
Q 041829 317 RNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG--------LENLQGYIRNHIQLAKHFEG 388 (486)
Q Consensus 317 ~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--------~~g~~~~~~~~~~~a~~l~~ 388 (486)
++.+..... .+..... . +..+ ...+..+++.+.+. .+.++++.++..++++++.+
T Consensus 262 ~~~~~~l~~----~~~~~~~--------~--~~~~---~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 324 (394)
T 2ay1_A 262 AATRELAQG----AMAFLNR--------Q--TYSF---PPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAG 324 (394)
T ss_dssp HHHHHHHHH----HHHHHHH--------T--TTSS---CCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHh--------h--hcCC---CChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432211110 0000000 0 0001 12233333333321 24677788888889999999
Q ss_pred HHhcCC---CeEEecCCCceEEEE-EecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHH
Q 041829 389 LVAQDL---RFEVVTPRIFSLVCF-RLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRH 464 (486)
Q Consensus 389 ~l~~~~---~~~~~~~~~~~~v~f-~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~d 464 (486)
.|+++. ++++.. +..+++.+ .+ + . ..+...+.+.| +.+.+ .+|+++ + .+++++
T Consensus 325 ~L~~~~~~~~~~~~~-~~~g~~~~~~~-~--------~---~~~~~~l~~~g-i~v~~-------~~Ris~-~-~~~~~~ 381 (394)
T 2ay1_A 325 ELRDLSGSDRFGFVA-EHRGMFSRLGA-T--------P---EQVKRIKEEFG-IYMVG-------DSRINI-A-GLNDNT 381 (394)
T ss_dssp HHHHHHTSSTTTHHH-HCCSSEEECCC-C--------H---HHHHHHHHHHC-EECCT-------TCEEEG-G-GCCTTT
T ss_pred HHHhcCCCCCeeEEc-CCceEEEeeCC-C--------H---HHHHHHHHhCC-EEecC-------CCeEEe-e-cCCHhh
Confidence 998763 365543 33233332 22 1 1 23444455566 55543 379998 4 478999
Q ss_pred HHHHHHHHHHH
Q 041829 465 VNAAWEVMQDK 475 (486)
Q Consensus 465 i~~~~~~l~~~ 475 (486)
+++++++|+++
T Consensus 382 i~~~~~~l~~~ 392 (394)
T 2ay1_A 382 IPILARAIIEV 392 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999999875
No 184
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.82 E-value=8e-19 Score=177.59 Aligned_cols=318 Identities=10% Similarity=0.005 Sum_probs=197.1
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHH--HHHHHHHHHHHHH--hCccCCCCeEEEecC
Q 041829 107 SWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVL--VVLLAARDKALKR--VGKNSLEKLVVYASD 182 (486)
Q Consensus 107 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~--~al~~a~~~~~~~--~~~~~~~~~~v~~s~ 182 (486)
.|....+..++++. ++++++.+++ ..++|+|+++++. .++.+..+.. +. ......+++.|+++.
T Consensus 73 ~Y~~~~g~~~lr~~----ia~~~~~~~~-------~i~~t~G~~~al~~~~~~~~l~~~~-~g~~~~~~~~~gd~V~v~~ 140 (427)
T 3ppl_A 73 NYGGLDGIVDIRQI----WADLLGVPVE-------QVLAGDASSLNIMFDVISWSYIFGN-NDSVQPWSKEETVKWICPV 140 (427)
T ss_dssp SSCCSSCCHHHHHH----HHHHHTSCGG-------GEEECSSCHHHHHHHHHHHHHHHCC-TTCSSCGGGSSCCEEEEEE
T ss_pred CCCCCCCcHHHHHH----HHHHhCCCcc-------eEEEeCCcHHHHHHHHHHHHHhccC-CcccccccCCCCCEEEEcC
Confidence 44444566777777 5666687664 5899999999884 4444433200 00 000000167888999
Q ss_pred CCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEe-cCCccccccCChH---HHHHH
Q 041829 183 QTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCAT-VGTTSSTAVDPLL---ALGNI 258 (486)
Q Consensus 183 ~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~-~~~t~tG~id~l~---~I~~i 258 (486)
.+|.++...++..|. +++.+|++++ .+|+++|+++++.. ++.+|+++ .++|+||.+-|.+ +|+++
T Consensus 141 p~y~~~~~~~~~~g~---~~~~v~~~~~---g~d~~~l~~~l~~~-----~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~ 209 (427)
T 3ppl_A 141 PGYDRHFSITERFGF---EMISVPMNED---GPDMDAVEELVKNP-----QVKGMWVVPVFSNPTGFTVTEDVAKRLSAM 209 (427)
T ss_dssp SCCHHHHHHHHHTTC---EEEEEEEETT---EECHHHHHHHTTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHHC
T ss_pred CCcHHHHHHHHHcCC---EEEEeCCCCC---CCCHHHHHHHHhcC-----CCeEEEECCCCCCCCCccCCHHHHHHHHHH
Confidence 999999999999999 9999999864 49999999988421 24566655 7899999998876 88888
Q ss_pred H-HHhCCEEEeeccccchhccCccch--hccc-----CCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCccc
Q 041829 259 A-KSNGMWFHVDAAYAGSACICPEYR--QYID-----GVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEF 330 (486)
Q Consensus 259 a-~~~g~~lhvD~A~g~~~~~~~~~~--~~~~-----~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~y 330 (486)
| +++|+++|+|++|+.+.+...... .... +....+.+..+++|++.....+|+++... .... .+.....+
T Consensus 210 a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~-~l~~-~~~~~~~~ 287 (427)
T 3ppl_A 210 ETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSA-ENRK-WYTGHAGI 287 (427)
T ss_dssp CCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCH-HHHH-HHHHHHHH
T ss_pred HhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCH-HHHH-HHHHHhhc
Confidence 8 999999999999986433211100 0110 12245577889999966667788776653 3222 22110000
Q ss_pred ccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhCh-----hhHHHHHHHHHHHHHHHHHHHh----cCCCeEEecC
Q 041829 331 LKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGL-----ENLQGYIRNHIQLAKHFEGLVA----QDLRFEVVTP 401 (486)
Q Consensus 331 l~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~-----~g~~~~~~~~~~~a~~l~~~l~----~~~~~~~~~~ 401 (486)
. +.....+..+++...+.. +.+++..++..++.+.+.+.|. .++++++..+
T Consensus 288 ~--------------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p 347 (427)
T 3ppl_A 288 R--------------------GIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVP 347 (427)
T ss_dssp H--------------------CSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCC
T ss_pred c--------------------cCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCC
Confidence 0 001123333444443332 2344444445555555555553 3445776555
Q ss_pred CCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEe-ee-E-----CCEeEEEEEecCCCCCHHHHHHHHHHHHH
Q 041829 402 RIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISH-TV-L-----SGKYILRFAVGAPLTEWRHVNAAWEVMQD 474 (486)
Q Consensus 402 ~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~-~-----~~~~~lRi~~~~~~~t~~di~~~~~~l~~ 474 (486)
.....+.+++... ...++.+.|.+.| +.+.+ .. + .+..++|+++ ... ++++|++++++|.+
T Consensus 348 ~~g~~~~~~~~~~---------~~~~~~~~l~~~g-v~v~~~g~~~~~~~~~~~~~~Ris~-~~~-~~~~i~~~~~~l~~ 415 (427)
T 3ppl_A 348 AGGYFISLDVVPG---------TASRVAELAKEAG-IALTGAGSSYPLRQDPENKNLRLAP-SLP-PVEELEVAMDGVAT 415 (427)
T ss_dssp SBSSCEEEECSTT---------CHHHHHHHHHHTT-EECCCTTTTSGGGCCTTSCEEEECC-SSS-CHHHHHHHHHHHHH
T ss_pred CccEEEEEECCcc---------hHHHHHHHHHHCC-CEEecCcCcCCCCCCCCCCeEEEEC-CCC-CHHHHHHHHHHHHH
Confidence 4555666666431 1245667777777 45544 21 1 2457999999 333 89999999999999
Q ss_pred HHHHHHH
Q 041829 475 KASALLA 481 (486)
Q Consensus 475 ~~~~l~~ 481 (486)
+.+++..
T Consensus 416 ~l~~~~~ 422 (427)
T 3ppl_A 416 CVLLAAA 422 (427)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887754
No 185
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.82 E-value=9.4e-19 Score=175.72 Aligned_cols=303 Identities=16% Similarity=0.093 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCC-CeEEEecCCCchhHHHHHHH
Q 041829 116 ELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLE-KLVVYASDQTHSALQKACQI 194 (486)
Q Consensus 116 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~-~~~v~~s~~~H~s~~~a~~~ 194 (486)
....++.+++++++|.+ ..++|+|||+|+..++.+++...... +. .+ +.+|+.+...|.+...+...
T Consensus 81 ~~~~~l~~~la~~~~~~---------~v~~~~gg~~a~~~al~~~~~~~~~~-~~--~g~~~vi~~~~~y~~~~~~~~~~ 148 (406)
T 4adb_A 81 EPVLRLAKKLIDATFAD---------RVFFCNSGAEANEAALKLARKFAHDR-YG--SHKSGIVAFKNAFHGRTLFTVSA 148 (406)
T ss_dssp HHHHHHHHHHHHHSSCS---------EEEEESSHHHHHHHHHHHHHHHHHHH-TC--TTCCEEEEETTCCCCSSHHHHHH
T ss_pred HHHHHHHHHHHhhCCCC---------eEEEeCcHHHHHHHHHHHHHHHHHhc-CC--CCCcEEEEECCCcCCCcHHHhhc
Confidence 34555667799999865 28999999999999998776532111 00 03 34455555556655555554
Q ss_pred hCCCC---------CCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc-----CChHHHHHHHH
Q 041829 195 GGIHP---------QNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV-----DPLLALGNIAK 260 (486)
Q Consensus 195 ~g~g~---------~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i-----d~l~~I~~ia~ 260 (486)
.+... ..+..+|. .|+++|++++++. +.+|+++ +.+++|.+ +++++|.++|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~------~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~ 214 (406)
T 4adb_A 149 GGQPAYSQDFAPLPADIRHAAY-------NDINSASALIDDS------TCAVIVE-PIQGEGGVVPASNAFLQGLRELCN 214 (406)
T ss_dssp SSCGGGTGGGCSCCSSEEEECT-------TCHHHHHTTCSTT------EEEEEEC-SEETTTTSEECCHHHHHHHHHHHH
T ss_pred cCCccccccCCCCCCCceEeCC-------CcHHHHHHHhcCC------eEEEEEe-CCcCCCCCccCCHHHHHHHHHHHH
Confidence 44210 13444442 4899999888632 4577777 78888854 57999999999
Q ss_pred HhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCC
Q 041829 261 SNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANM 340 (486)
Q Consensus 261 ~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~ 340 (486)
+||+++|+|++|+++......+.....++ ..|.+++ +|+++....+|+++.++ +.. +.+... ...
T Consensus 215 ~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~t~--sK~~~~G~r~G~~~~~~-~~~-~~~~~~---~~~------- 279 (406)
T 4adb_A 215 RHNALLIFDEVQTGVGRTGELYAYMHYGV-TPDLLTT--AKALGGGFPVGALLATE-ECA-RVMTVG---THG------- 279 (406)
T ss_dssp HTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEEEECH-HHH-HTCCTT---SSC-------
T ss_pred HcCCEEEEeccccCCCccchhHHHHhcCC-CCCEEEe--chhhcCCCCeEEEEEcH-HHH-hhhccC---CcC-------
Confidence 99999999999985432211111111122 3577765 99998555688877654 322 222110 000
Q ss_pred ccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCCceEEEEEecCCCC
Q 041829 341 VVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQD----LRFEVVTPRIFSLVCFRLLPPHN 416 (486)
Q Consensus 341 ~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~v~f~~~~~~~ 416 (486)
. + ..........+..+++.+.. +++.++..++++++.+.|+++ +.+.-. +....++.+.+....
T Consensus 280 ----~--~-~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~- 347 (406)
T 4adb_A 280 ----T--T-YGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSEV-RGLGLLIGCVLNADY- 347 (406)
T ss_dssp ----C--S-STTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEETTEEEEEECTTT-
T ss_pred ----C--C-CCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEE-EEEEEEEEEEEeCCc-
Confidence 0 0 01111112233334444332 567777888888888888764 112111 123346666664311
Q ss_pred CcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041829 417 DEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALLA 481 (486)
Q Consensus 417 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~~ 481 (486)
.....++.+.|.++| +.+.+. +..++|+++ +..++++|+++++++|+++.+++.+
T Consensus 348 -----~~~~~~~~~~l~~~g-i~v~~~---~~~~iRi~~-~~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 348 -----AGQAKQISQEAAKAG-VMVLIA---GGNVVRFAP-ALNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp -----TTCHHHHHHHHHHTT-EECEES---STTEEEECC-CTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHCC-cEEeec---CCCeEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 012356778888887 444432 346899988 7788999999999999999987764
No 186
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.82 E-value=2.9e-19 Score=179.29 Aligned_cols=305 Identities=14% Similarity=0.010 Sum_probs=186.5
Q ss_pred ccccChhhHHHHHHHHHHHHHHcC-CCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCc
Q 041829 107 SWITSPAATELEMIVLDWLAKLLK-LPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTH 185 (486)
Q Consensus 107 ~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H 185 (486)
.|...++..++++++.+++. +| .+++ ..++|+|+++++..++. ... +++.|+++..+|
T Consensus 70 ~y~~~~g~~~lr~~la~~l~--~g~~~~~-------~v~~~~G~~~al~~~~~-~~~-----------~gd~Vl~~~p~y 128 (400)
T 3asa_A 70 GYGPDFGLPALRQKLSEDFY--RGFVDAK-------EIFISDGAKVDLFRLLS-FFG-----------PNQTVAIQDPSY 128 (400)
T ss_dssp CCCCTTCCHHHHHHHHHTTS--TTSSCGG-------GEEEESCHHHHHHHHHH-HHC-----------SSCEEEEEESCC
T ss_pred CCCCCCCCHHHHHHHHHHHH--cCCCCHH-------HEEEccChHHHHHHHHH-HcC-----------CCCEEEECCCCc
Confidence 34434566778887444332 56 4443 58999999988766432 211 567788888999
Q ss_pred hhHHHHHHHhCCCCCC-eEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC---hHHHHHHHHH
Q 041829 186 SALQKACQIGGIHPQN-FRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP---LLALGNIAKS 261 (486)
Q Consensus 186 ~s~~~a~~~~g~g~~~-v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~---l~~I~~ia~~ 261 (486)
.++..+++..|. + ++.+|.++++.+..|++.+ ..+.+|+++.++|+||.+-| +++|+++|++
T Consensus 129 ~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~l~~~-----------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~ 194 (400)
T 3asa_A 129 PAYLDIARLTGA---KEIIALPCLQENAFFPEFPED-----------THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIE 194 (400)
T ss_dssp HHHHHHHHHTTC---SEEEEEECCGGGTTCCCCCTT-----------CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---cceEecccchhcCcccChhhc-----------cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 999999999998 8 9999987544344453211 12457788889999999976 6678999999
Q ss_pred hCCEEEeeccccchhccCccchhcccCCc---CCCceeeecccccCCC-CcceEEEEeCchH------HHHHhcCCcccc
Q 041829 262 NGMWFHVDAAYAGSACICPEYRQYIDGVE---EADSFNMNAHKWFLTN-FDCSALWVKDRNT------LIQSLSTNPEFL 331 (486)
Q Consensus 262 ~g~~lhvD~A~g~~~~~~~~~~~~~~~~~---~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~------~~~~~~~~~~yl 331 (486)
+|+++++|++|+.+... +.....+..+. ..+.+..+++|+++.| ..+|+++.++... +...........
T Consensus 195 ~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (400)
T 3asa_A 195 HEILILFDAAYSTFISD-PSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTT 273 (400)
T ss_dssp TTCEEEEECTTGGGCCC-TTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHH
T ss_pred cCCEEEEEchhhhhhcC-CCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhccC
Confidence 99999999999864321 11111111222 2346688999999744 4578888765431 111110000000
Q ss_pred cccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEEE-
Q 041829 332 KNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCFR- 410 (486)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f~- 410 (486)
.+ ....+...++...+....++++.++..++++++.+.|++. ++++..+...+++.++
T Consensus 274 -------------------~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 332 (400)
T 3asa_A 274 -------------------FN-GASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWVKP 332 (400)
T ss_dssp -------------------CC-CCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT-TCEEEECSSSSEEEEEC
T ss_pred -------------------cc-CCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCceEEEEec
Confidence 00 0112222222222211146677788888999999999987 8888754445566666
Q ss_pred ecCCCCCcccchHHHHHHHHHHHcc-CcEEEEee-eE--CCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 041829 411 LLPPHNDEDHGNKLNHKLLDDINST-GKIFISHT-VL--SGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 411 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-~~--~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
+.. +.+ . .++.+.|.++ | +.+.+. .+ .+..++|+++ .++++++++++++|+++.++..
T Consensus 333 ~~~-~~~---~----~~~~~~l~~~~g-v~v~~g~~f~~~~~~~iRis~---~~~~e~i~~~l~~l~~~~~~~~ 394 (400)
T 3asa_A 333 TQA-NIS---D----RDLFDFFLREYH-IAITPGIGFGRSGSGFVRFSS---LGKREDILAACERLQMAPALQS 394 (400)
T ss_dssp CCT-TCC---T----TTHHHHHHHHHS-EECEEGGGGCGGGTTCEEEEC---CSCHHHHHHHHHHHHC------
T ss_pred cCC-CCC---H----HHHHHHHHHhCC-EEEeChhHhCCCCCCEEEEEe---eCCHHHHHHHHHHHHHHHHhhh
Confidence 432 110 1 2355666544 6 555443 22 1346899995 4689999999999998876544
No 187
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.82 E-value=7.6e-19 Score=177.36 Aligned_cols=304 Identities=12% Similarity=0.086 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCC-eEEEecCCCchhHHHHHH
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEK-LVVYASDQTHSALQKACQ 193 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~-~~v~~s~~~H~s~~~a~~ 193 (486)
.+...++.+++++++|.+ ..++++|||+|+..++.+++.....+ +.. ++ .+|+.+...|.+...++.
T Consensus 98 ~~~~~~l~~~la~~~g~~---------~v~~~~ggteA~~~al~~~~~~~~~~-~~~--g~~~vi~~~~~yh~~~~~~~~ 165 (420)
T 2pb2_A 98 NEPALRLGRKLIDATFAE---------RVLFMNSGTEANETAFKLARHYACVR-HSP--FKTKIIAFHNAFHGRSLFTVS 165 (420)
T ss_dssp CHHHHHHHHHHHHHSSCS---------EEEEESSHHHHHHHHHHHHHHHHHHH-TCT--TCCEEEEETTCCCCSSHHHHH
T ss_pred CHHHHHHHHHHHhhCCCC---------eEEEeCCHHHHHHHHHHHHHHHhhhc-cCC--CCCEEEEEeCCcCCcCHHHHH
Confidence 345555666688888843 38999999999999999887532111 101 23 344445555666666666
Q ss_pred HhCCC-------C--CCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc----cCChHHHHHHHH
Q 041829 194 IGGIH-------P--QNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA----VDPLLALGNIAK 260 (486)
Q Consensus 194 ~~g~g-------~--~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~----id~l~~I~~ia~ 260 (486)
..|.. . ..++.+|. .|+++|+++++++ +.+|+++.+++++|. .+++++|.++|+
T Consensus 166 ~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~~i~~~------~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~ 232 (420)
T 2pb2_A 166 VGGQPKYSDGFGPKPADIIHVPF-------NDLHAVKAVMDDH------TCAVVVEPIQGEGGVQAATPEFLKGLRDLCD 232 (420)
T ss_dssp HSSCHHHHTTSSSCCSCEEEECT-------TCHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHHHHHHHH
T ss_pred hcCCccccccCCCCCCCeEEecC-------CCHHHHHHHhccC------ceEEEEeCCcCCCCeecCCHHHHHHHHHHHH
Confidence 65541 0 12455553 2899999988642 457777777666675 378999999999
Q ss_pred HhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCC
Q 041829 261 SNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANM 340 (486)
Q Consensus 261 ~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~ 340 (486)
+||+++++|++|.++......+.....++ ..|.+++ +|+++.+..+|+++++++ +.+.+.. .. ..
T Consensus 233 ~~gi~lI~Dev~~g~~~~g~~~~~~~~~~-~~diit~--sK~l~~G~~iG~~~~~~~--l~~~l~~--~~--~~------ 297 (420)
T 2pb2_A 233 EHQALLVFDEVQCGMGRTGDLFAYMHYGV-TPDILTS--AKALGGGFPVSAMLTTQE--IASAFHV--GS--HG------ 297 (420)
T ss_dssp HTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEEEECHH--HHTTCC--------C------
T ss_pred HcCCEEEEEcCCcCcccCCcHHHHHhcCC-CCCeEEe--cccccCCCceEEEEEhHH--HHHhhcC--CC--cC------
Confidence 99999999999976432111111011122 3687754 799987677999988753 3222211 00 00
Q ss_pred ccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCCceEEEEEecCCCC
Q 041829 341 VVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQD----LRFEVVTPRIFSLVCFRLLPPHN 416 (486)
Q Consensus 341 ~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~v~f~~~~~~~ 416 (486)
.+. .+.......+..+++.+.. +++.++..++++++.+.|+++ |.+..+ ++...++.+.+...
T Consensus 298 ------~t~-~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~v~~~~~-- 364 (420)
T 2pb2_A 298 ------STY-GGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDI-RGMGLLIGAELKPK-- 364 (420)
T ss_dssp ------CEE-CCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEETTEEEEEECGG--
T ss_pred ------ccc-CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecceEEEEEECCC--
Confidence 000 1111222344445555443 356777888888888888764 433333 33455677776421
Q ss_pred CcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 041829 417 DEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 417 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
......++.+.|.+.| +.+.+. +..++|+++ ...++++|+++++++|+++.+++.
T Consensus 365 ----~~~~~~~l~~~l~~~G-i~v~~~---~~~~iRl~~-~~~~t~eei~~~~~~l~~~l~~~~ 419 (420)
T 2pb2_A 365 ----YKGRARDFLYAGAEAG-VMVLNA---GADVMRFAP-SLVVEEADIHEGMQRFAQAVGKVV 419 (420)
T ss_dssp ----GTTCHHHHHHHHHHTT-EECEES---STTEEEECC-CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHHCC-CEEEeC---CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHh
Confidence 0001356778888877 444432 245899998 668899999999999999887654
No 188
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.82 E-value=4.4e-18 Score=172.23 Aligned_cols=309 Identities=10% Similarity=-0.003 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecC-CCchhHHHHHHHhC
Q 041829 118 EMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASD-QTHSALQKACQIGG 196 (486)
Q Consensus 118 e~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~-~~H~s~~~a~~~~g 196 (486)
..++.+.++++++.+.+ ..++|+|||+|+..++.+++..... .|.++..|++.. ..|.+...++...|
T Consensus 88 ~~~l~~~la~~~~~~~~-------~v~~~~ggtea~~~ai~~~~~~~~~----~g~~~~~vi~~~~~yh~~~~~~~~~~~ 156 (429)
T 1s0a_A 88 AIELCRKLVAMTPQPLE-------CVFLADSGSVAVEVAMKMALQYWQA----KGEARQRFLTFRNGYHGDTFGAMSVCD 156 (429)
T ss_dssp HHHHHHHHHHHSCTTCC-------EEEEESSHHHHHHHHHHHHHHHHHH----HTCCCCEEEEETTCCCCSSHHHHTTSC
T ss_pred HHHHHHHHHHhCCCCCC-------EEEEeCCHHHHHHHHHHHHHHHhcc----cCCCCCeEEEECCCCCCCchhhhhhcC
Confidence 34444568899986544 5899999999999999876642110 011244555555 45655554444332
Q ss_pred CC----------CCCeEEEeCCCC---CCC-ccCHHHHHHHHHHHHhCCCccEEEEEecC-CccccccCC----hHHHHH
Q 041829 197 IH----------PQNFRVLKTDSS---TNY-SLSPDSLAEAISRDLTIGLIPFFLCATVG-TTSSTAVDP----LLALGN 257 (486)
Q Consensus 197 ~g----------~~~v~~v~~~~~---~~~-~id~~~L~~~i~~~~~~g~~p~~vv~~~~-~t~tG~id~----l~~I~~ 257 (486)
.. ...++.+|++.. +.+ .+|+++|++++++.. ..+.+|+++.. ++++|.+.| +++|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~ 233 (429)
T 1s0a_A 157 PDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR---HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRK 233 (429)
T ss_dssp TTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHT---TTEEEEEECSSEECTTTCEEBCTHHHHHHHH
T ss_pred CchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCC---CCEEEEEEeecccCCCCcccCCHHHHHHHHH
Confidence 10 114566776421 123 689999999997521 12456666655 688998776 999999
Q ss_pred HHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCCc-ccccccc
Q 041829 258 IAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTNP-EFLKNKA 335 (486)
Q Consensus 258 ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~~-~yl~~~~ 335 (486)
+|++||+++|+|++|.++......+.....++ ..|.++++ |+++.+ .++|+++.++ +.+ +.+.... ..+
T Consensus 234 l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~-~~d~~t~s--K~l~~G~~~iG~~~~~~-~~~-~~l~~~~~~~~---- 304 (429)
T 1s0a_A 234 ICDREGILLIADEIATGFGRTGKLFACEHAEI-APDILCLG--KALTGGTMTLSATLTTR-EVA-ETISNGEAGCF---- 304 (429)
T ss_dssp HHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTSSSCCEEEEECH-HHH-HHHHTSTTSSC----
T ss_pred HHHHcCCEEEEeehhhCCcccchHHHhhhcCC-CCCEEEec--ccccCCCccceEEEeCH-HHH-HHhhcCCCccc----
Confidence 99999999999999976432111110001122 46777655 988877 7899988765 333 2222110 000
Q ss_pred cccCCccCCCCCccCCCCCCCcH---HHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCCCceEEEE
Q 041829 336 SQANMVVDYKDWQIPLGRRFRSL---KLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQD---LRFEVVTPRIFSLVCF 409 (486)
Q Consensus 336 ~~~~~~~~~~~~~~~~sr~~~~l---~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~---~~~~~~~~~~~~~v~f 409 (486)
....+-....+ ++.++++.+..+ +..++..++++++.+.|+++ |++..+ ++..+++.+
T Consensus 305 ------------~~~~t~~~n~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~~ 368 (429)
T 1s0a_A 305 ------------MHGPTFMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQLAPARDAEMVADV-RVLGAIGVV 368 (429)
T ss_dssp ------------SCCCTTTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTEEEE-EEETTEEEE
T ss_pred ------------ccCCCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEEE-EEeeEEEEE
Confidence 00001111223 333444433222 45667778899999999875 566533 233446667
Q ss_pred EecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 410 RLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
.+... .+ ..++.+.|.++| +.+.+. + .++|+++ +..+|++|+++++++|+++.+++
T Consensus 369 ~~~~~------~~--~~~l~~~l~~~G-i~v~~~---~-~~iRis~-~~~~t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 369 ETTHP------VN--MAALQKFFVEQG-VWIRPF---G-KLIYLMP-PYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp EESSC------BC--HHHHHHHHHHTT-EECCCB---T-TEEEECC-CTTCCHHHHHHHHHHHHHHTSSG
T ss_pred EECCc------cc--HHHHHHHHHHCC-CEEecc---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHhh
Confidence 66421 11 245777777777 555442 2 5899998 77889999999999999876543
No 189
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.82 E-value=1.3e-18 Score=173.95 Aligned_cols=246 Identities=17% Similarity=0.154 Sum_probs=172.8
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHH
Q 041829 110 TSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQ 189 (486)
Q Consensus 110 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 189 (486)
..|...++|+. +++++|.+. .+++++|++|+.. +..... +++.|+++...|.+..
T Consensus 65 ~~p~~~~l~~~----la~l~g~~~---------~~~~~sG~~Ai~~-~~~l~~-----------~gd~Vi~~~~~y~~~~ 119 (400)
T 3nmy_A 65 HNPTRFAYERC----VAALEGGTR---------AFAFASGMAATST-VMELLD-----------AGSHVVAMDDLYGGTF 119 (400)
T ss_dssp CCHHHHHHHHH----HHHHHTCSE---------EEEESSHHHHHHH-HHTTSC-----------TTCEEEEESSCCHHHH
T ss_pred CCHHHHHHHHH----HHHHhCCCC---------EEEecCHHHHHHH-HHHHcC-----------CCCEEEEeCCCchHHH
Confidence 45666777777 888888753 6788888888765 322111 5678888999998666
Q ss_pred HHHH-----HhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCC
Q 041829 190 KACQ-----IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGM 264 (486)
Q Consensus 190 ~a~~-----~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~ 264 (486)
..+. ..|+ +++.++.+ |+++|+++|++. +.+|+++.++|++|.+.|+++|+++|+++|+
T Consensus 120 ~~~~~~~~~~~g~---~~~~v~~~-------d~~~l~~~i~~~------~~~v~~e~~~np~G~~~~l~~i~~la~~~g~ 183 (400)
T 3nmy_A 120 RLFERVRRRTAGL---DFSFVDLT-------DPAAFKAAIRAD------TKMVWIETPTNPMLKLVDIAAIAVIARKHGL 183 (400)
T ss_dssp HHHHHTHHHHHCC---EEEEECTT-------SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHTTC
T ss_pred HHHHHhhHhhcCe---EEEEECCC-------CHHHHHHHhccC------CCEEEEECCCCCCCeeecHHHHHHHHHHcCC
Confidence 5543 3588 88888754 899999988653 4688899999999999999999999999999
Q ss_pred EEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCC--cce-EEEEeCchHHHHHhcCCcccccccccccCCc
Q 041829 265 WFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNF--DCS-ALWVKDRNTLIQSLSTNPEFLKNKASQANMV 341 (486)
Q Consensus 265 ~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~--~~g-~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~ 341 (486)
++++|++|+.+....+. . .++|.++.+++|++++|. -.| +++++++..... +.....+
T Consensus 184 ~livDe~~~~~~~~~~~-~------~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~-l~~~~~~----------- 244 (400)
T 3nmy_A 184 LTVVDNTFASPMLQRPL-S------LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQ-MAFLQNS----------- 244 (400)
T ss_dssp EEEEECTTTHHHHCCGG-G------GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHH-HHHHHHH-----------
T ss_pred EEEEECCCcccccCChh-h------cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHH-HHHHHHh-----------
Confidence 99999999865543221 1 168999999999999873 245 455556543322 2110000
Q ss_pred cCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC-----------------c
Q 041829 342 VDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRI-----------------F 404 (486)
Q Consensus 342 ~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~-----------------~ 404 (486)
.+.....+..|++++. .+.+..++++..++++++.+.|+++|.++-+..|. .
T Consensus 245 ---------~g~~~~~~~a~~~l~~--l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G 313 (400)
T 3nmy_A 245 ---------IGGVQGPFDSFLALRG--LKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFG 313 (400)
T ss_dssp ---------HCCBCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCC
T ss_pred ---------cCCCCCHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCC
Confidence 1112345677777764 45678888999999999999999999987653332 3
Q ss_pred eEEEEEecCCCCCcccchHHHHHHHHHHH
Q 041829 405 SLVCFRLLPPHNDEDHGNKLNHKLLDDIN 433 (486)
Q Consensus 405 ~~v~f~~~~~~~~~~~~~~~~~~l~~~l~ 433 (486)
.+++|.+.+ ..+...++.+.+.
T Consensus 314 ~~~~~~l~~-------~~~~~~~~~~~l~ 335 (400)
T 3nmy_A 314 GIVSIVLKG-------GFDAAKRFCEKTE 335 (400)
T ss_dssp SEEEEEETT-------HHHHHHHHHHHCS
T ss_pred ceEEEEeCC-------cHHHHHHHHHcCC
Confidence 588888863 1233455666554
No 190
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.82 E-value=2.3e-18 Score=172.27 Aligned_cols=299 Identities=12% Similarity=0.052 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCC-chhHHHHHH
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQT-HSALQKACQ 193 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~-H~s~~~a~~ 193 (486)
.....++.+++++++|. + ..++++|||+|+..++.+++...... |.++..|++.... |.+...+..
T Consensus 77 ~~~~~~l~~~la~~~~~-~--------~v~~~~gg~ea~~~al~~~~~~~~~~----g~~~~~vi~~~~~yhg~~~~~~~ 143 (395)
T 3nx3_A 77 NENIAAAAKNLAKASAL-E--------RVFFTNSGTESIEGAMKTARKYAFNK----GVKGGQFIAFKHSFHGRTLGALS 143 (395)
T ss_dssp CHHHHHHHHHHHHHHTC-S--------EEEEESSHHHHHHHHHHHHHHHHHHT----TCTTCEEEEETTCCCCSSHHHHT
T ss_pred CHHHHHHHHHHHHhcCC-C--------eEEEeCCHHHHHHHHHHHHHHHhhcc----CCCCCEEEEEcCCcCCCCHHHHh
Confidence 45666677779999883 2 38999999999999998877542211 1134445554444 544433332
Q ss_pred HhCC---------CCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----hHHHHHHHH
Q 041829 194 IGGI---------HPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP----LLALGNIAK 260 (486)
Q Consensus 194 ~~g~---------g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~----l~~I~~ia~ 260 (486)
..+- -..++..+|.+ |+++|++++++. +.+|++...++++|.+.| +++|+++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~l~~~l~~~------~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~ 210 (395)
T 3nx3_A 144 LTANEKYQKPFKPLISGVKFAKYN-------DISSVEKLVNEK------TCAIILESVQGEGGINPANKDFYKALRKLCD 210 (395)
T ss_dssp TCCCHHHHGGGCSCCSCEEEECTT-------CHHHHHTTCCTT------EEEEEEESEECTTSCEECCHHHHHHHHHHHH
T ss_pred hcCCcccccccCCCCCCcEEeCCC-------CHHHHHHhccCC------eEEEEEeCccCCCCcccCCHHHHHHHHHHHH
Confidence 2220 00145555532 799999988633 457777888888999977 999999999
Q ss_pred HhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCC
Q 041829 261 SNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANM 340 (486)
Q Consensus 261 ~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~ 340 (486)
+||+++|+|++|.++......+.....++ ..|.++++ |.++.+.++|+++.++. .+.+.+... ..
T Consensus 211 ~~~~~li~Dev~~~~g~~g~~~~~~~~~~-~~d~~t~s--K~~~~G~~~G~~~~~~~-~~~~~~~~~---~~-------- 275 (395)
T 3nx3_A 211 EKDILLIADEIQCGMGRSGKFFAYEHAQI-LPDIMTSA--KALGCGLSVGAFVINQK-VASNSLEAG---DH-------- 275 (395)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGTTTSCCEEEEECHH-HHHHHSCTT---CC--------
T ss_pred HcCCEEEEEecccCCCcCCcchhHHhcCC-CCCEEEec--ccccCCCceEEEEEchh-hhhhhcCCc---cc--------
Confidence 99999999999986532211111111112 35776655 88877778898877653 212222110 00
Q ss_pred ccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHh----cCCCeEEecCCCceEEEEEecCCCC
Q 041829 341 VVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVA----QDLRFEVVTPRIFSLVCFRLLPPHN 416 (486)
Q Consensus 341 ~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~----~~~~~~~~~~~~~~~v~f~~~~~~~ 416 (486)
..+.....+...+++..+..-.-+++.++..++.+++++.|+ ++|.+..+ ++..+++.+.+....
T Consensus 276 ---------~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~- 344 (395)
T 3nx3_A 276 ---------GSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKR-KGLGFMQGLSLDKSV- 344 (395)
T ss_dssp ---------SSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEECTTS-
T ss_pred ---------CCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeEEEEEEEEeCCcc-
Confidence 001111233333333332100012344455555555555554 45655443 334456677765311
Q ss_pred CcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041829 417 DEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 417 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 477 (486)
...++.+.|.++|. .+.+. +..++|+++ +..+|++|+++++++|+++.+
T Consensus 345 -------~~~~~~~~l~~~Gi-~v~~~---~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 345 -------KVAKVIQKCQENAL-LLISC---GENDLRFLP-PLILQKEHIDEMSEKLRKALK 393 (395)
T ss_dssp -------CHHHHHHHHHHTTE-ECEEE---TTTEEEECC-CTTCCHHHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHCCC-EEecC---CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHH
Confidence 12567777888884 44432 246899998 788899999999999998765
No 191
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.82 E-value=2.5e-19 Score=182.39 Aligned_cols=281 Identities=16% Similarity=0.139 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHH----
Q 041829 116 ELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKA---- 191 (486)
Q Consensus 116 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a---- 191 (486)
...+++.+++++++|.+. .+++++|++|+..++. ... +++.|+++...|.++...
T Consensus 133 ~~~~~l~~~la~~~g~~~---------~i~~~sGt~al~~~l~-~~~-----------~Gd~Vi~~~~~y~~~~~~~~~~ 191 (464)
T 1ibj_A 133 PTRDALESLLAKLDKADR---------AFCFTSGMAALSAVTH-LIK-----------NGEEIVAGDDVYGGSDRLLSQV 191 (464)
T ss_dssp HHHHHHHHHHHHHHTCSE---------EEEESSHHHHHHHHHT-TSC-----------TTCEEEEESSCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCe---------EEEECCHHHHHHHHHH-HhC-----------CCCEEEEECCCchhHHHHHHHH
Confidence 366778888999999753 6888888988765543 111 667888899999888764
Q ss_pred HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeecc
Q 041829 192 CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAA 271 (486)
Q Consensus 192 ~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A 271 (486)
++..|. +++.+|.+ |+++|++++++. +.+|+++.++|++|.+.|+++|+++|+++|+++|+|++
T Consensus 192 ~~~~G~---~v~~v~~~-------d~~~l~~~i~~~------tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea 255 (464)
T 1ibj_A 192 VPRSGV---VVKRVNTT-------KLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNS 255 (464)
T ss_dssp SGGGTC---EEEEECTT-------SHHHHHHHCCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECT
T ss_pred HHHcCC---EEEEeCCC-------CHHHHHHHhccC------ceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECC
Confidence 456688 88888753 889999888632 56899999999999999999999999999999999999
Q ss_pred ccchhccCccchhcccCCcCCCceeeecccccCCCCcc--eEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCcc
Q 041829 272 YAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDC--SALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQI 349 (486)
Q Consensus 272 ~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~--g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 349 (486)
|+.+....+ .. .++|+++.++||++++|.|+ |+++++++..... +.....+
T Consensus 256 ~~~g~~~~~-~~------~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~-l~~~~~~------------------- 308 (464)
T 1ibj_A 256 IMSPVLSRP-LE------LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKE-VYFLQNS------------------- 308 (464)
T ss_dssp TTCTTTCCG-GG------TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHH-HHHHHHH-------------------
T ss_pred CcccccCCh-hh------cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHH-HHHHHHh-------------------
Confidence 976443211 11 16899999999999988765 8888876543322 2110000
Q ss_pred CCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhc--------------CCCeEEecCC---CceEEEEEec
Q 041829 350 PLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQ--------------DLRFEVVTPR---IFSLVCFRLL 412 (486)
Q Consensus 350 ~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~--------------~~~~~~~~~~---~~~~v~f~~~ 412 (486)
.+.....+..|++++.+. .+..++++..+.+..+.+.+++ +|++++..+. ..++++|.+.
T Consensus 309 -~g~~~~~~~~~a~~~al~--~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~ 385 (464)
T 1ibj_A 309 -EGSGLAPFDCWLCLRGIK--TMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG 385 (464)
T ss_dssp -TTCBCCHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS
T ss_pred -cCCCCCHHHHHHHHhchh--hHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC
Confidence 011113445666655442 2233334444444444444443 3445444322 2468888873
Q ss_pred CCCCCcccchHHHHHHHHHHHccCcEEEEeee----------------------ECC--EeEEEEEecCCCCCHHHHHHH
Q 041829 413 PPHNDEDHGNKLNHKLLDDINSTGKIFISHTV----------------------LSG--KYILRFAVGAPLTEWRHVNAA 468 (486)
Q Consensus 413 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----------------------~~~--~~~lRi~~~~~~~t~~di~~~ 468 (486)
. .+...++.+.|...| +.+.... ..| .+++|+++ .. +|++++
T Consensus 386 ~--------~~~~~~~~~~L~~~g-i~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsv-g~----edi~~l 451 (464)
T 1ibj_A 386 S--------VALSKHLVETTKYFS-IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISA-GI----EDVDDL 451 (464)
T ss_dssp C--------HHHHHHHHHHCSSSE-ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEEC-CS----SCHHHH
T ss_pred C--------HHHHHHHHHhcCcce-EeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEe-CC----CCHHHH
Confidence 1 122245666664433 2222110 011 35899999 32 789999
Q ss_pred HHHHHHHHH
Q 041829 469 WEVMQDKAS 477 (486)
Q Consensus 469 ~~~l~~~~~ 477 (486)
++.|+++.+
T Consensus 452 i~~L~~al~ 460 (464)
T 1ibj_A 452 ISDLDIAFK 460 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988765
No 192
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.82 E-value=5.1e-19 Score=183.72 Aligned_cols=363 Identities=7% Similarity=0.015 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHc-C-CCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHH
Q 041829 89 VAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLL-K-LPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALK 166 (486)
Q Consensus 89 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~-g-~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~ 166 (486)
++..+.++....... ..+....+..++++++.+++.+.+ + .+.. .....++|+|||+++..++.+.....+-
T Consensus 117 ~~~~v~a~~~~~~~~--~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~----~~~~i~~t~G~t~al~~~~~~l~~~~l~ 190 (533)
T 3f6t_A 117 RDKVVAEWVNGAVAN--NYPVPDRCLVNTEKIINYFLQELSYKDANLA----EQTDLFPTEGGTAAIVYAFHSLAENHLL 190 (533)
T ss_dssp HHHHHHHHHHHHHTC--SCCSSSSCCHHHHHHHHHHHHHHHTTTCCCG----GGEEEEEEEHHHHHHHHHHHHHHHTTSS
T ss_pred CcHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHHHHHHhcCCCCCCC----CcceEEEECCHHHHHHHHHHHhhhhhcc
Confidence 566666666555432 122244567899999999997773 3 2221 0015899999999998877653211000
Q ss_pred HhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCC--CCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCc
Q 041829 167 RVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDS--STNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTT 244 (486)
Q Consensus 167 ~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~--~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t 244 (486)
.+++.|+++..+|.++..+++..|. +++.+|++. +.++.+|+++|++++++. +.+|+++.++|
T Consensus 191 ------~~gd~Viv~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~d~~~l~~~l~~~------~k~v~l~~p~N 255 (533)
T 3f6t_A 191 ------KKGDKIAINEPIFTPYLRIPELKDY---ELVEVDLHSYEKNDWEIEPNEIEKLKDPS------IKALIVVNPTN 255 (533)
T ss_dssp ------CTTCEEEEESSCCHHHHTSGGGGGS---EEEEECCCEETTTTSEECHHHHHHHSCTT------EEEEEEESSCT
T ss_pred ------CCcCEEEEcCCCcHHHHHHHHHcCC---eEEEEEecCCcccCCCCCHHHHHHHhCCC------CeEEEEeCCCC
Confidence 1677899999999999999999999 999999874 345899999999988543 46788889999
Q ss_pred cccccCChH---HHHHHHH-HhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchH
Q 041829 245 SSTAVDPLL---ALGNIAK-SNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNT 319 (486)
Q Consensus 245 ~tG~id~l~---~I~~ia~-~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~ 319 (486)
++|.+-|.+ +|+++|+ +||+++++|.+|+.+.......... ....+.++.+++|.++.| ..+|+++.++...
T Consensus 256 PtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~---~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~ 332 (533)
T 3f6t_A 256 PTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSV---VPYNTMLVYSYSKLFGCTGWRLGVIALNEKNV 332 (533)
T ss_dssp TTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHH---SGGGEEEEEESHHHHTCGGGCEEEEEEESSCH
T ss_pred CCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhc---CCCCEEEEecCcccCCCcccceEEEEECcHHH
Confidence 999997765 8888888 6899999999998654322111111 123457888999998744 3389988887643
Q ss_pred HHHHhcCCcc---------cc--cccccccC-------CccCCCCCccCCCCCCCcHHHHH----HHHHh--------Ch
Q 041829 320 LIQSLSTNPE---------FL--KNKASQAN-------MVVDYKDWQIPLGRRFRSLKLWM----VLRLY--------GL 369 (486)
Q Consensus 320 ~~~~~~~~~~---------yl--~~~~~~~~-------~~~~~~~~~~~~sr~~~~l~~~~----~l~~~--------g~ 369 (486)
+.+....-++ |- ........ ......... +.........+ ++..+ ..
T Consensus 333 ~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~---~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~ 409 (533)
T 3f6t_A 333 FDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYH---TAGLSTPQQIMEALFSMTHLLTSTNGGSDD 409 (533)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGG---GCSCCHHHHHHHHHHHHHHHTTCBGGGTBC
T ss_pred HHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhc---ccCCChHHHHHHHHHHHHHHhhhccccchH
Confidence 3333221111 00 00000000 000000000 00111111111 23333 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceEEEE-EecCCCCCcccch---------HHHHHHHHHHH-ccCcE
Q 041829 370 ENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFSLVCF-RLLPPHNDEDHGN---------KLNHKLLDDIN-STGKI 438 (486)
Q Consensus 370 ~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~v~f-~~~~~~~~~~~~~---------~~~~~l~~~l~-~~g~~ 438 (486)
+.++++.++..+++++|.+.|. + ++.+. ++..+++++ .+..... ..... ....++..++. +.|..
T Consensus 410 ~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~-~~~~g~~~~~~l~~~~~-~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~ 485 (533)
T 3f6t_A 410 PYIDIARKLVSERYDQLHDAMQ-A-PKDET-DTNTHYYSLIDIYRLAE-KIYGKEFRDYLTNNFEQVDFLLKLAEKNGVV 485 (533)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-C-CCCCS-TTBCCSEEEEEHHHHHH-HHHCHHHHHHHHHHCCHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-C-Ccccc-CCCceEEEEEehHhhhh-hccchHHHHHhhccCCHHHHHHHHHHhCCEE
Confidence 5677788888889999999997 5 45543 444444433 3321000 00000 01124444554 45644
Q ss_pred EEEeeeEC-CEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 041829 439 FISHTVLS-GKYILRFAVGAPLTEWRHVNAAWEVMQDKASALLARLS 484 (486)
Q Consensus 439 ~~~~~~~~-~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~~~~~ 484 (486)
+..+..+. +.+++|+++.+ .+++++++++++|.++.+++.+++.
T Consensus 486 v~pg~~f~~~~~~iRls~a~--~~~e~i~~~i~~L~~~l~~~~~~~~ 530 (533)
T 3f6t_A 486 LVDGVGFGAKPGELRVSQAN--LPTEDYALIGKQVLELLKEYYEEFK 530 (533)
T ss_dssp SCTTEEECSSTTEEEEESSS--SCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EeCCcccCCCCCEEEEEEee--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 24689999933 4789999999999999998887664
No 193
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.81 E-value=1.3e-17 Score=168.93 Aligned_cols=305 Identities=11% Similarity=0.019 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecC-CCchhHHHHHHH
Q 041829 116 ELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASD-QTHSALQKACQI 194 (486)
Q Consensus 116 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~-~~H~s~~~a~~~ 194 (486)
+...++.+.+++++|.+ ..++++|||+|+..++.+++.......+.. .++..|++.+ ..|.+...++..
T Consensus 107 ~~~~~l~~~la~~~g~~---------~v~~~~sGseA~~~al~~a~~~~~~~~g~~-~gr~~vi~~~~~yhg~~~~~~~~ 176 (433)
T 1z7d_A 107 VPLGICERYLTNLLGYD---------KVLMMNTGAEANETAYKLCRKWGYEVKKIP-ENMAKIVVCKNNFSGRTLGCISA 176 (433)
T ss_dssp HHHHHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHHHHHHHHTSCCC-TTCCEEEEETTC-----------
T ss_pred HHHHHHHHHHHhhcCCC---------eEEEeCCHHHHHHHHHHHHHHHhhhccCCC-CCCCeEEEEeCCcCCcchhhhcc
Confidence 34445555688888743 389999999999999998875321110000 0224455554 456555555554
Q ss_pred hCC-------CC--CCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC----ChHHHHHHHHH
Q 041829 195 GGI-------HP--QNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD----PLLALGNIAKS 261 (486)
Q Consensus 195 ~g~-------g~--~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id----~l~~I~~ia~~ 261 (486)
.|. +. ..++.+|. .|+++|+++++. ..+.+|+++...+++|.+. ++++|.++|++
T Consensus 177 ~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~ 244 (433)
T 1z7d_A 177 STTKKCTSNFGPFAPQFSKVPY-------DDLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKK 244 (433)
T ss_dssp ---------------CEEEECT-------TCHHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH
T ss_pred cCCccccccCCCCCCCeEEeCC-------CCHHHHHHHhCC-----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHH
Confidence 441 00 14455553 289999999851 1245677776666789864 79999999999
Q ss_pred hCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCCcccccccccccCC
Q 041829 262 NGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTNPEFLKNKASQANM 340 (486)
Q Consensus 262 ~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~ 340 (486)
||+++++|++|.++......+.....++ ..|.++ ..|++++. ...|+++.++ + +.+.+.. .. .
T Consensus 245 ~g~llI~DEv~~g~g~~g~~~~~~~~~~-~~di~t--~sK~l~~G~~~~G~v~~~~-~-~~~~l~~--~~--~------- 308 (433)
T 1z7d_A 245 YNVLFVADEVQTGLGRTGKLLCVHHYNV-KPDVIL--LGKALSGGHYPISAVLAND-D-IMLVIKP--GE--H------- 308 (433)
T ss_dssp TTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEE--ECGGGGTTSSCCEEEEECH-H-HHTTCCT--TC--C-------
T ss_pred cCCEEEEecCccCCCcCCcchhhHhcCC-CCCEEE--ECccccCCCCCeEEEEECH-H-HHhhhcc--cc--c-------
Confidence 9999999999976422111111011122 467765 46999865 4689888865 2 2222211 00 0
Q ss_pred ccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCCceEEEEEecCCCC
Q 041829 341 VVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQD----LRFEVVTPRIFSLVCFRLLPPHN 416 (486)
Q Consensus 341 ~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~v~f~~~~~~~ 416 (486)
..+. .+.......+.++++.+..+ ++.++..++++++.+.|+++ |.+..+ ++..+++.+.+....
T Consensus 309 -----~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~~g~~~~i~~~~~~- 377 (433)
T 1z7d_A 309 -----GSTY-GGNPLAASICVEALNVLINE---KLCENAEKLGGPFLENLKRELKDSKIVRDV-RGKGLLCAIEFKNEL- 377 (433)
T ss_dssp -----CCTT-TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEEE-EEETTEEEEEECTTT-
T ss_pred -----cccC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeeeeEEEEEEccCh-
Confidence 0011 11111222334445444222 45667777888888888753 333322 234456777765310
Q ss_pred CcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 041829 417 DEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 417 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
....++.+.|.++| +.+.+. +..++|+++ +..+|++|+++++++|+++.+++.
T Consensus 378 ------~~~~~~~~~l~~~G-v~v~~~---~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~~ 430 (433)
T 1z7d_A 378 ------VNVLDICLKLKENG-LITRDV---HDKTIRLTP-PLCITKEQLDECTEIIVKTVKFFD 430 (433)
T ss_dssp ------CCHHHHHHHHHHTT-EECCEE---TTTEEEECC-CTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred ------hHHHHHHHHHHHCC-eEEecC---CCCEEEEEC-CcCCCHHHHHHHHHHHHHHHHHHH
Confidence 01246778888887 444442 345899998 778899999999999999887654
No 194
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.81 E-value=2.2e-18 Score=174.04 Aligned_cols=315 Identities=11% Similarity=0.018 Sum_probs=193.9
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHH-HHHHHHHHHHHHHhCccCC------CCeEEE
Q 041829 107 SWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVL-VVLLAARDKALKRVGKNSL------EKLVVY 179 (486)
Q Consensus 107 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~-~al~~a~~~~~~~~~~~~~------~~~~v~ 179 (486)
.|....+..++++. +++++|.+++ ..++|+|++++++ ..+..+... + ...|. .++.|+
T Consensus 71 ~Y~~~~G~~~lr~~----ia~~~~~~~~-------~i~~t~G~~~al~l~~~~~~l~~--~--~~~g~~~~~~~d~~~Vl 135 (422)
T 3d6k_A 71 NYGGLLGIADIREL----WAEALGLPAD-------LVVAQDGSSLNIMFDLISWSYTW--G--NNDSSRPWSAEEKVKWL 135 (422)
T ss_dssp SSCCSSCCHHHHHH----HHHHHTCCGG-------GEEECSSCHHHHHHHHHHHHHHH--C--CTTCSSCGGGSSCCEEE
T ss_pred CCCCCCCCHHHHHH----HHHHhCCChh-------HEEEecchHHHHHHHHHHHHhcC--c--ccccccccccCCCCEEE
Confidence 45555557778887 5555677654 5899999998873 333222211 0 00000 033688
Q ss_pred ecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEE-EecCCccccccCChH---HH
Q 041829 180 ASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLC-ATVGTTSSTAVDPLL---AL 255 (486)
Q Consensus 180 ~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv-~~~~~t~tG~id~l~---~I 255 (486)
+...+|..+...++..|. +++.+|++++ .+|+++|++++++. ++.+|+ .+.++|+||.+-|.+ +|
T Consensus 136 ~~~p~y~~~~~~~~~~g~---~~~~v~~~~~---g~d~~~l~~~l~~~-----~~~~v~~~~~~~NPtG~~~~~~~l~~l 204 (422)
T 3d6k_A 136 CPVPGYDRHFTITEHFGF---EMINVPMTDE---GPDMGVVRELVKDP-----QVKGMWTVPVFGNPTGVTFSEQTCREL 204 (422)
T ss_dssp EEESCCHHHHHHHHHHTC---EEEEEEEETT---EECHHHHHHHHTST-----TEEEEEECCSSCTTTCCCCCHHHHHHH
T ss_pred EeCCccHHHHHHHHHcCC---EEEecCCCCC---CCCHHHHHHHHhcC-----CCeEEEEcCCCCCCCCCCCCHHHHHHH
Confidence 889999999999999999 9999999753 39999999988541 244556 678899999998876 78
Q ss_pred HHHHH-HhCCEEEeeccccch-hccCc-cchhcc-----cCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCC
Q 041829 256 GNIAK-SNGMWFHVDAAYAGS-ACICP-EYRQYI-----DGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTN 327 (486)
Q Consensus 256 ~~ia~-~~g~~lhvD~A~g~~-~~~~~-~~~~~~-----~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~ 327 (486)
+++|+ ++|+++++|++|+.. +.... .+.... .+....+.+..+++|++.....+|+++.+. +.+. .+...
T Consensus 205 ~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~-~l~~-~l~~~ 282 (422)
T 3d6k_A 205 AEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSK-ENIE-WYASH 282 (422)
T ss_dssp HHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCH-HHHH-HHHHH
T ss_pred HHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCH-HHHH-HHHHH
Confidence 88888 999999999999741 11111 111110 011234577888999944334589888763 3222 22210
Q ss_pred cccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhCh-----hhHHHHHHHHHHHHHHHHHHHhc----CCCeEE
Q 041829 328 PEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGL-----ENLQGYIRNHIQLAKHFEGLVAQ----DLRFEV 398 (486)
Q Consensus 328 ~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~-----~g~~~~~~~~~~~a~~l~~~l~~----~~~~~~ 398 (486)
..+. +.....+...++...+.. +.+++..++..+..+++.+.|.+ ++++++
T Consensus 283 ~~~~--------------------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~ 342 (422)
T 3d6k_A 283 ANVR--------------------GIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKW 342 (422)
T ss_dssp HHHH--------------------CSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred HHhh--------------------cCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEE
Confidence 0000 001123344444444433 23444455555556666666543 444676
Q ss_pred ecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEe-ee-E-----CCEeEEEEEecCCCCCHHHHHHHHHH
Q 041829 399 VTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISH-TV-L-----SGKYILRFAVGAPLTEWRHVNAAWEV 471 (486)
Q Consensus 399 ~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~-~-----~~~~~lRi~~~~~~~t~~di~~~~~~ 471 (486)
..+.....+.+++... + ...+.+.+.+.| +.+.+ .. + .+..++|+++ .. ++++++++++++
T Consensus 343 ~~p~~g~~~~~~~~~~-------~--~~~~~~~l~~~g-V~v~~~g~~f~~~~~~~~~~iRis~-~~-~~~e~i~~~~~~ 410 (422)
T 3d6k_A 343 TSPTGGYFISVDVVPG-------T--ASRVVELAKEAG-IALTGAGSSFPLHNDPNNENIRLAP-SL-PPVAELEVAMDG 410 (422)
T ss_dssp CCCSBSSCEEEEESTT-------C--HHHHHHHHHHTT-EECCCTTTTSGGGCCTTSCEEEECC-SS-SCHHHHHHHHHH
T ss_pred eCCCcceEEEEECCCC-------C--HHHHHHHHHHCC-eEEEcCccccCCCCCCCCCeEEEec-CC-CCHHHHHHHHHH
Confidence 5444455566676431 1 245666666777 55544 22 2 1346899999 44 799999999999
Q ss_pred HHHHHHHHHH
Q 041829 472 MQDKASALLA 481 (486)
Q Consensus 472 l~~~~~~l~~ 481 (486)
|+++.+++.+
T Consensus 411 l~~~l~~~~~ 420 (422)
T 3d6k_A 411 FATCVLMAAL 420 (422)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 195
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.81 E-value=5.4e-18 Score=165.77 Aligned_cols=294 Identities=11% Similarity=0.065 Sum_probs=194.5
Q ss_pred HHHHHHHHHhcCc-CccccccChhhHHHHHHHHHHHHHHcC---CCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHH
Q 041829 91 GFLGEMLSAGLNI-VGFSWITSPAATELEMIVLDWLAKLLK---LPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALK 166 (486)
Q Consensus 91 ~~~~~~l~~~~n~-~~~~~~~~~~~~~le~~~~~~la~l~g---~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~ 166 (486)
..+.+.+...+.. ....|. .+...++++. ++++++ .+.+ ..++|+|||+++..++.+.
T Consensus 35 ~~v~~a~~~~~~~~~~~~y~-~~~~~~lr~~----la~~~~~~~~~~~-------~v~~~~G~~~al~~~~~~~------ 96 (335)
T 1uu1_A 35 EDLVDEVFRRLNSDALRIYY-DSPDEELIEK----ILSYLDTDFLSKN-------NVSVGNGADEIIYVMMLMF------ 96 (335)
T ss_dssp HHHHHHHHHTCCGGGGGSCC-CSSCHHHHHH----HHHHHTCSSCCGG-------GEEEESSHHHHHHHHHHHS------
T ss_pred HHHHHHHHHHhhhhhhhcCC-CCchHHHHHH----HHHHcCCCCCCHH-------HEEEcCChHHHHHHHHHHh------
Confidence 3445555555522 222332 2345666666 667776 5543 5899999999988777643
Q ss_pred HhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccc
Q 041829 167 RVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSS 246 (486)
Q Consensus 167 ~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~t 246 (486)
++.|+++ .+|.++...++..|. +++.+|.++ +|.+|+++| + ++.+|+++.++|+|
T Consensus 97 --------gd~Vl~~-p~y~~~~~~~~~~g~---~~~~v~~~~--~~~~d~~~l-----~------~~~~v~l~~p~npt 151 (335)
T 1uu1_A 97 --------DRSVFFP-PTYSCYRIFAKAVGA---KFLEVPLTK--DLRIPEVNV-----G------EGDVVFIPNPNNPT 151 (335)
T ss_dssp --------SEEEECS-SSCHHHHHHHHHHTC---EEEECCCCT--TSCCCCCCC-----C------TTEEEEEESSCTTT
T ss_pred --------CCcEEEC-CCcHHHHHHHHHcCC---eEEEeccCC--CCCCCHHHc-----C------CCCEEEEeCCCCCC
Confidence 3468888 999999999999999 999998864 368898887 1 24678878999999
Q ss_pred cccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhc
Q 041829 247 TAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLS 325 (486)
Q Consensus 247 G~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~ 325 (486)
|.+.|.+++.++++..| ++++|++|+.+... .....+. ....+.+..+++|+++.| ..+|+++.+ ++.......
T Consensus 152 G~~~~~~~l~~l~~~~~-~li~De~~~~~~~~--~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~ 226 (335)
T 1uu1_A 152 GHVFEREEIERILKTGA-FVALDEAYYEFHGE--SYVDFLK-KYENLAVIRTFSKAFSLAAQRVGYVVAS-EKFIDAYNR 226 (335)
T ss_dssp CCCCCHHHHHHHHHTTC-EEEEECTTHHHHCC--CCGGGGG-TCSSEEEEEESTTTTTCGGGCCEEEEEC-HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCC-EEEEECcchhhcch--hHHHHhh-hCCCEEEEecchhhcCCcccCeEEEEeC-HHHHHHHHH
Confidence 99999999999999999 99999999864321 1111111 123567788999999744 347888884 333322111
Q ss_pred CCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC-hhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCc
Q 041829 326 TNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG-LENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIF 404 (486)
Q Consensus 326 ~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~ 404 (486)
....| ....+..+++.+.+. .+.++++.++..++++++.+.|+++ ++++. ++..
T Consensus 227 ~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~ 281 (335)
T 1uu1_A 227 VRLPF-----------------------NVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYRIT-DSRG 281 (335)
T ss_dssp HSCTT-----------------------CSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCS
T ss_pred hcCCC-----------------------CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEc-CCCC
Confidence 11111 112233333333322 3467788888999999999999887 77654 4455
Q ss_pred eEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 405 SLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 405 ~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
+.+.+.+.. ....++.+.|.++| +.+.+ +..++|+++ + +++|+++++++|+++
T Consensus 282 ~~~~~~~~~---------~~~~~~~~~l~~~g-i~v~~----~~~~iRis~-~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 282 NFVFVFMEK---------EEKERLLEHLRTKN-VAVRS----FREGVRITI-G---KREENDMILRELEVF 334 (335)
T ss_dssp SEEEEECCT---------HHHHHHHHHHHHHT-EEEEE----ETTEEEEEC-C---CHHHHHHHHHHHHCC
T ss_pred eEEEEECCC---------CCHHHHHHHHHHCC-EEEEE----CCCeEEEEe-C---CHHHHHHHHHHHHhh
Confidence 566666531 12356777777777 55554 235899998 3 468899999998753
No 196
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.81 E-value=8.8e-18 Score=170.07 Aligned_cols=326 Identities=13% Similarity=0.063 Sum_probs=177.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHH
Q 041829 114 ATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQ 193 (486)
Q Consensus 114 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 193 (486)
..+...++.+|++++++.+.+ ..++|+|||+|+..++.+++...... +.. ++..|++.+..++.....+.
T Consensus 70 ~~~~~~~l~~~la~~~~~~~~-------~v~~~~gg~ea~~~al~~~~~~~~~~-g~~--~~~~vi~~~~~yhg~~~~~~ 139 (430)
T 3i4j_A 70 SSDVLEEYAGRLARFVGLPTF-------RFWAVSGGSEATESAVKLARQYHVER-GEP--GRFKVITRVPSYHGASLGSL 139 (430)
T ss_dssp EEHHHHHHHHHHHHHTTCTTC-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCT--TCCEEEEETTC---------
T ss_pred CCHHHHHHHHHHHHhCCCCCC-------EEEEeCcHHHHHHHHHHHHHHHHHhc-CCC--CCcEEEEEeCCcCCCCcccc
Confidence 345666777889999987654 58999999999999998887642211 111 34455555555443332222
Q ss_pred Hh-CCCC---------C--CeEEEeCCCC-CCCccCHHHHHHHHHHHHhCCCccEEEEEecCCc-cccccCC----hHHH
Q 041829 194 IG-GIHP---------Q--NFRVLKTDSS-TNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTT-SSTAVDP----LLAL 255 (486)
Q Consensus 194 ~~-g~g~---------~--~v~~v~~~~~-~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t-~tG~id~----l~~I 255 (486)
.+ +... . .+..+|.+.. ..+..|+++|+++|++.. ...+.+|+++..++ ++|.+.+ +++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l 217 (430)
T 3i4j_A 140 AASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREG--PETVAAFMAEPVVGASDAALAPAPGYYERV 217 (430)
T ss_dssp ----------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHC--GGGEEEEEECSSCCGGGTTCCCCTTHHHHH
T ss_pred cccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcC--CCCEEEEEEcCcccCcCCcccCCHHHHHHH
Confidence 22 2100 0 2334444321 002457899999997531 01245677777777 8888877 9999
Q ss_pred HHHHHHhCCEEEeeccccchhccCccchhccc-CCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCC-ccccc
Q 041829 256 GNIAKSNGMWFHVDAAYAGSACICPEYRQYID-GVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTN-PEFLK 332 (486)
Q Consensus 256 ~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~-~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~-~~yl~ 332 (486)
.++|++||+++|+|++|.++......+..... ++ ..|.++++ |.++.. ...|+++.++ +.. +.+... ..+..
T Consensus 218 ~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~-~~di~t~s--K~l~~G~~r~G~~~~~~-~i~-~~~~~~~~~~~~ 292 (430)
T 3i4j_A 218 RDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGV-TPDIAVLG--KGLAAGYAPLAGLLAAP-QVY-ETVMGGSGAFMH 292 (430)
T ss_dssp HHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTC-CCSEEEEC--GGGTTTSSCCEEEEECH-HHH-HHHHHTTCBCCC
T ss_pred HHHHHHcCCEEEEechhhCCCcccchhhhhhhcCC-CCcEEEEc--ccccCCccccEEEEECH-HHH-HHHhccCCcccc
Confidence 99999999999999999865322111110111 22 35666654 998765 5578887743 333 222211 11110
Q ss_pred ccccccCCccCCCCCccCCCCCCCcHHHH---HHHHHhChhhHHHHHHHHHHHHHHHHHHH----hcCCCeEEecCCCce
Q 041829 333 NKASQANMVVDYKDWQIPLGRRFRSLKLW---MVLRLYGLENLQGYIRNHIQLAKHFEGLV----AQDLRFEVVTPRIFS 405 (486)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~sr~~~~l~~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~l----~~~~~~~~~~~~~~~ 405 (486)
. .+-....+... ++++.+..+ ++.++..++.+++++.| +++|.+..+ ++..+
T Consensus 293 ~-----------------~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~ 351 (430)
T 3i4j_A 293 G-----------------FTYAGHPVSVAAGLSVLDIVERE---DLTGAAKERGAQLLAGLQALQARFPQMMQV-RGTGL 351 (430)
T ss_dssp C-----------------CTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETT
T ss_pred c-----------------CCCCCCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEE
Confidence 0 01111233333 334433222 33444444445554444 456767654 34445
Q ss_pred EEEEEecCCCCCcccc-hHHHHHHHHHHHccCcEEEEee--eE--CCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 406 LVCFRLLPPHNDEDHG-NKLNHKLLDDINSTGKIFISHT--VL--SGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 406 ~v~f~~~~~~~~~~~~-~~~~~~l~~~l~~~g~~~~~~~--~~--~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
++.+.+.......... .....++.+.+.++|. .+.+. .. .+..++|+++ +...|++++++++++|+++.+++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv-~v~~~~~~~~~~~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 352 LLGVVLGDLATGQAFETPGIASRIGAAALKRGL-ITYPGSGAEPNGRGDHLLLGP-PLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp EEEEEEC------------CHHHHHHHHHHTTE-ECC-----------CEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccccccCCCccHHHHHHHHHHHHhCCC-EEEecccccCCCCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 6666654211000000 1112567888888884 44333 11 1346899998 66789999999999999988764
No 197
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.81 E-value=1.7e-18 Score=173.66 Aligned_cols=254 Identities=11% Similarity=0.084 Sum_probs=173.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEE---cCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecC-CCchh
Q 041829 112 PAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVI---QGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASD-QTHSA 187 (486)
Q Consensus 112 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~---t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~-~~H~s 187 (486)
++..++|+. +++++|.+. .++ ++|||+||..++.+... +++.|+++. ..|..
T Consensus 73 ~~~~~Le~~----lA~l~g~e~---------alv~p~~~sGt~Ai~~al~all~-----------pGD~Vl~~~~~~y~~ 128 (427)
T 3i16_A 73 IGRDSLDAV----YARVFNTES---------ALVRPHFVNGTHALGAALFGNLR-----------PGNTMLSVCGEPYDT 128 (427)
T ss_dssp HHHHHHHHH----HHHHHTCSE---------EEEETTCCSHHHHHHHHHHHHCC-----------TTCEEEESSSSCCGG
T ss_pred HHHHHHHHH----HHHHhCCcc---------eEEeCCCccHHHHHHHHHHHHhC-----------CCCEEEEeCCCccHH
Confidence 345667765 999999865 355 88999999887765433 678888887 77876
Q ss_pred HHH-----------HHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEec----CCccccccCCh
Q 041829 188 LQK-----------ACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATV----GTTSSTAVDPL 252 (486)
Q Consensus 188 ~~~-----------a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~----~~t~tG~id~l 252 (486)
... .++..|+ +++.+|.+++ +.+|+++|++++++. .++.+|+++. ++|++|.+.|+
T Consensus 129 ~~~~~g~~~~~~~~~l~~~G~---~~~~v~~~~~--g~~D~e~l~~~l~~~----~~tklV~i~~s~~~p~nptg~i~dl 199 (427)
T 3i16_A 129 LHDVIGITENSNMGSLKEFGI---NYKQVDLKED--GKPNLEEIEKVLKED----ESITLVHIQRSTGYGWRRALLIEDI 199 (427)
T ss_dssp GHHHHTCSCCCSSCCTGGGTC---EEEECCCCTT--SSCCHHHHHHHHHTC----TTEEEEEEECSCCSSSSCCCCHHHH
T ss_pred HHHHHhccccchHHHHHHcCC---EEEEecCccC--CCcCHHHHHHHhhCC----CCCEEEEEEcCCCCCCCCcccHHHH
Confidence 653 3455688 8888888754 589999999999731 1256888888 89999999999
Q ss_pred HHHHHHHHH--hCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCC--cceEEEEeCchHHHHHhcC-C
Q 041829 253 LALGNIAKS--NGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNF--DCSALWVKDRNTLIQSLST-N 327 (486)
Q Consensus 253 ~~I~~ia~~--~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~--~~g~l~~r~~~~~~~~~~~-~ 327 (486)
++|+++|++ +|+++|||++|+.+........ .++|.++.++||+++++. ..|+++.+ ++.+.+.... .
T Consensus 200 ~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~------~gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li~~l~~~~~ 272 (427)
T 3i16_A 200 KSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTD------VGADLIAGSLIKNIGGGIAPTGGYLAGT-KDCIEKTSYRLT 272 (427)
T ss_dssp HHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGG------GTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCEEEEECCCccccccCCccc------cCCeEEEecCcccCCCCCCceEEEEEEC-HHHHHHHHHhcc
Confidence 999999999 9999999999986552221111 168999999999998732 24666654 4433322110 1
Q ss_pred cccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCce--
Q 041829 328 PEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFS-- 405 (486)
Q Consensus 328 ~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~-- 405 (486)
...+. ...+..+. ..|.+++ |...+..++++..+++.++++.|+++ ++++. |....
T Consensus 273 ~~~~g----------------~~~~~~~~--~a~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~V~-p~~~~~~ 330 (427)
T 3i16_A 273 VPGIG----------------GECGSTFG--VVRSMYQ--GLFLAPHISMEALKGAILCSRIMELA-GFEVM-PKYDEKR 330 (427)
T ss_dssp CTTTG----------------GGCCCCTT--CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEE-SCTTSCC
T ss_pred cCccC----------------ccCCccHH--HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhC-CCeec-CCCCCCC
Confidence 11110 01111111 1455554 33555788899999999999999998 57775 32333
Q ss_pred ---EEEEEecCCCCCcccchHHHHHHHHHHHcc
Q 041829 406 ---LVCFRLLPPHNDEDHGNKLNHKLLDDINST 435 (486)
Q Consensus 406 ---~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~ 435 (486)
+++|.+.. .+...++++.|...
T Consensus 331 ~~~i~~i~l~~--------~~~~~~f~~~l~~~ 355 (427)
T 3i16_A 331 SDIIQSIKFND--------KDKLIEFCKGIQTG 355 (427)
T ss_dssp SSSCEEEECSS--------HHHHHHHHHHHHHT
T ss_pred ccEEEEEEECC--------HHHHHHHHHHHhhc
Confidence 77888752 34456777777654
No 198
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.81 E-value=7.1e-19 Score=176.00 Aligned_cols=319 Identities=12% Similarity=0.060 Sum_probs=198.7
Q ss_pred HHHHHHHHhcCc-CccccccChhhHHHHHHHHHHHHHHcCC--CCCCcCCCCCCeEE--cCchhHHHHHHHHHHHHHHHH
Q 041829 92 FLGEMLSAGLNI-VGFSWITSPAATELEMIVLDWLAKLLKL--PEDFLSSGQGGGVI--QGTASEAVLVVLLAARDKALK 166 (486)
Q Consensus 92 ~~~~~l~~~~n~-~~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~ 166 (486)
.+.+.+...+.. ....|...++..++++++.+|+.+..+. +++ ..++ |+|||+|+..++.+++...
T Consensus 48 ~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~-------~v~~~~~~g~~~a~~~~~~~~~~~~-- 118 (396)
T 2q7w_A 48 SVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDK-------RARTAQTPGGTGALRVAADFLAKNT-- 118 (396)
T ss_dssp HHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTT-------CEEEEEESHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccc-------cEEEEecccchhhHHHHHHHHHHhC--
Confidence 344445444322 2234545566788888877666443221 122 4676 9999999988876654311
Q ss_pred HhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccc
Q 041829 167 RVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSS 246 (486)
Q Consensus 167 ~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~t 246 (486)
+++.|+++..+|.++...++..|. +++.+|.++.+++.+|+++|++++++.. ....+++++.++|+|
T Consensus 119 -------~gd~Vl~~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~~~~p~npt 185 (396)
T 2q7w_A 119 -------SVKRVWVSNPSWPNHKSVFNSAGL---EVREYAYYDAENHTLDFDALINSLNEAQ---AGDVVLFHGCCHNPT 185 (396)
T ss_dssp -------CCCEEEEEESCCTHHHHHHHHTTC---EEEEEECEETTTTEECHHHHHHHHTTCC---TTCEEEEECSSCTTT
T ss_pred -------CCCEEEEcCCCchhHHHHHHHcCC---ceEEEecccCCCCCcCHHHHHHHHHhCC---CCCEEEEeCCCCCCC
Confidence 567788899999999999999999 9999998532247899999999986421 124577889999999
Q ss_pred cccCC---hHHHHHHHHHhCCEEEeeccccchhccC--c--cchhcccCCcCCCceeeecccccCCC-CcceEEEE--eC
Q 041829 247 TAVDP---LLALGNIAKSNGMWFHVDAAYAGSACIC--P--EYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWV--KD 316 (486)
Q Consensus 247 G~id~---l~~I~~ia~~~g~~lhvD~A~g~~~~~~--~--~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~--r~ 316 (486)
|.+-+ +++|+++|+++|+++++|++|+++.... + ..... .....-+.++.+++|.++.| ..+|++++ .+
T Consensus 186 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~ 264 (396)
T 2q7w_A 186 GIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAF-AAMHKELIVASSYSXNFGLYNERVGACTLVAAD 264 (396)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHH-HHHCSCEEEEEECTTTTTCGGGCCEEEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHH-HhcCCcEEEEEeccccccccccccceEEEEcCC
Confidence 99854 6689999999999999999998754310 0 11111 10112346678899998743 34788886 34
Q ss_pred chH---HHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC--------hhhHHHHHHHHHHHHHH
Q 041829 317 RNT---LIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG--------LENLQGYIRNHIQLAKH 385 (486)
Q Consensus 317 ~~~---~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--------~~g~~~~~~~~~~~a~~ 385 (486)
+.. +...+.. +... ..+ ....+..+++.+.+. .+.++++.++..+++++
T Consensus 265 ~~~~~~~~~~~~~---~~~~----------------~~~-~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 324 (396)
T 2q7w_A 265 SETVDRAFSQMKA---AIRA----------------NYS-NPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQL 324 (396)
T ss_dssp HHHHHHHHHHHHH---HHHT----------------TTS-SCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHhh----------------ccC-CCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 421 2211110 0000 000 012333444444432 24667777888889999
Q ss_pred HHHHHhcCC---CeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCH
Q 041829 386 FEGLVAQDL---RFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEW 462 (486)
Q Consensus 386 l~~~l~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~ 462 (486)
+.+.|+++. ++++. +|..+++.|.-.+ . ..+...+.+.| +.+.+ .+|+++. . .++
T Consensus 325 l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~--------~---~~~~~~l~~~g-v~v~~-------~~Ris~~-~-~~~ 382 (396)
T 2q7w_A 325 FVNTLQEKGANRDFSFI-IKQNGMFSFSGLT--------K---EQVLRLREEFG-VYAVA-------SGRVNVA-G-MTP 382 (396)
T ss_dssp HHHHHHHTTCCSCCTHH-HHCCSSEEECCCC--------H---HHHHHHHHHHC-EECCT-------TCEEEGG-G-CCT
T ss_pred HHHHHHhcCCCCCccee-cCCCceEEEecCC--------H---HHHHHHHHhcC-eeecC-------CceEEEe-e-cCH
Confidence 999999874 36554 3343444332111 1 23444444566 55544 3799994 2 389
Q ss_pred HHHHHHHHHHHHH
Q 041829 463 RHVNAAWEVMQDK 475 (486)
Q Consensus 463 ~di~~~~~~l~~~ 475 (486)
+++++++++|+++
T Consensus 383 e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 383 DNMAPLCEAIVAV 395 (396)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999865
No 199
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.81 E-value=3e-17 Score=165.58 Aligned_cols=297 Identities=8% Similarity=-0.023 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHcCCC-CCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEec-CCCchhHHHHHHH
Q 041829 117 LEMIVLDWLAKLLKLP-EDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYAS-DQTHSALQKACQI 194 (486)
Q Consensus 117 le~~~~~~la~l~g~~-~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s-~~~H~s~~~a~~~ 194 (486)
...++.+.+++++|.+ .+ ..++|+||++|+..++.+++.. .+..|++. ...|.+...++..
T Consensus 87 ~~~~l~~~la~~~~~~~~~-------~v~~~~gg~ea~~~ai~~~~~~----------~~~~vi~~~p~yh~~~~~~~~~ 149 (419)
T 2eo5_A 87 PQLELAKKLVTYSPGNFQK-------KVFFSNSGTEAIEASIKVVKNT----------GRKYIIAFLGGFHGRTFGSISL 149 (419)
T ss_dssp HHHHHHHHHHHHSSCSSCE-------EEEEESSHHHHHHHHHHHHHTT----------SCCEEEEETTCCCCSSHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCC-------EEEEeCchHHHHHHHHHHHHHh----------hCCcEEEECCCcCCCCHhhHhh
Confidence 3445556699999976 33 4899999999999999876642 13344444 4556666655544
Q ss_pred hCC--------C--CCCeEEEeCCCCCCCc----------------cCHHHHH-HHHHHHHhCCCccEEEEEecCCcccc
Q 041829 195 GGI--------H--PQNFRVLKTDSSTNYS----------------LSPDSLA-EAISRDLTIGLIPFFLCATVGTTSST 247 (486)
Q Consensus 195 ~g~--------g--~~~v~~v~~~~~~~~~----------------id~~~L~-~~i~~~~~~g~~p~~vv~~~~~t~tG 247 (486)
.|. + ...++.+|.+. .++ +|+++|+ +++++.. ....+.+|+++..++++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~-~~~~~~~vi~~p~~~~tG 226 (419)
T 2eo5_A 150 TASKAVQRSIVGPFMPGVIHVPYPN--PYRNPWHINGYENPSELVNRVIEFIEDYIFVNLV-PPEEVAGIFFEPIQGEGG 226 (419)
T ss_dssp CCSCGGGGCSSCCCCTTEEEECCCC--SSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTC-CGGGEEEEEECSSBTTTT
T ss_pred cCCccccccccCCCCCCCEEECCCc--cccccccccccccchhhHHHHHHHHHHHHHhhcc-CCCCEEEEEEeCccCCCC
Confidence 331 1 12678888753 233 4789999 8887420 001244666665556789
Q ss_pred ccCC----hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHH
Q 041829 248 AVDP----LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQ 322 (486)
Q Consensus 248 ~id~----l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~ 322 (486)
.+.| +++|.++|++||+++|+|++|.++......+.....++ ..|.+++ .|.++.+ ..+|+++.++.- .
T Consensus 227 ~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~-~~d~~t~--sK~~~~G~~riG~~~~~~~~-~-- 300 (419)
T 2eo5_A 227 YVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNT-VPDVITL--AKALGGGIMPIGATIFRKDL-D-- 300 (419)
T ss_dssp SBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEE--CGGGGTTTSCCEEEEEEGGG-C--
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCC-CCCEEEe--cccccCCccceEEEEEchHh-h--
Confidence 8766 99999999999999999999986532211111011112 3566654 4988876 788998887532 1
Q ss_pred HhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Q 041829 323 SLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPR 402 (486)
Q Consensus 323 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~ 402 (486)
.+. ... ..+-....+...++...+. .+++..++..+++++|.+.|+++ +..+ ++
T Consensus 301 ~~~---~~~------------------~~t~~~n~~~~~aa~aal~--~~~~~~~~~~~~~~~l~~~L~~~--~~~~-~~ 354 (419)
T 2eo5_A 301 FKP---GMH------------------SNTFGGNALACAIGSKVID--IVKDLLPHVNEIGKIFAEELQGL--ADDV-RG 354 (419)
T ss_dssp CC---------------------------CCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTS--SSEE-EE
T ss_pred cCC---ccc------------------CCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh--hhhe-Ee
Confidence 110 000 0000112333333333321 12236778888999999999876 2222 34
Q ss_pred CceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 403 IFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 403 ~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
..+++.+.+.+ ...... +.+.|.+.| +.+.+.. ..++|+++ +..+|++|+++++++|+++.++
T Consensus 355 ~g~~~~i~~~~-------~~~~~~-~~~~l~~~G-v~v~~~~---~~~lRis~-~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 355 IGLAWGLEYNE-------KKVRDR-IIGESFKRG-LLLLPAG---RSAIRVIP-PLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp ETTEEEEECSC-------HHHHHH-HHHHHHHTT-EECEEET---TTEEEECC-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEEec-------CccHHH-HHHHHHHCC-CEEecCC---CCEEEEEC-CCCCCHHHHHHHHHHHHHHHHh
Confidence 45566676632 112245 778888777 4444431 35899998 7788999999999999988764
No 200
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.80 E-value=2.1e-18 Score=172.50 Aligned_cols=251 Identities=11% Similarity=0.025 Sum_probs=172.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEE---cCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecC-CCchhH
Q 041829 113 AATELEMIVLDWLAKLLKLPEDFLSSGQGGGVI---QGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASD-QTHSAL 188 (486)
Q Consensus 113 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~---t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~-~~H~s~ 188 (486)
+..++|+. +++++|.+. .++ ++|||+||..++.+... +++.|+++. ..|...
T Consensus 60 ~~~~Le~~----lA~l~g~e~---------alv~p~~~sGt~Ai~~al~all~-----------~GD~Vl~~~~~~y~~~ 115 (409)
T 3jzl_A 60 GRDTLERV----YATVFKTEA---------ALVRPQIISGTHAISTVLFGILR-----------PDDELLYITGQPYDTL 115 (409)
T ss_dssp HHHHHHHH----HHHHHTCSE---------EEEETTSCSHHHHHHHHHHHHCC-----------TTCEEEECSSSCCTTH
T ss_pred HHHHHHHH----HHHHhCCCc---------EEEECCCccHHHHHHHHHHHhcC-----------CCCEEEEeCCCCcHhH
Confidence 45566665 899999865 455 88999999888765433 677888887 788877
Q ss_pred HHH----------HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEec----CCccccccCChHH
Q 041829 189 QKA----------CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATV----GTTSSTAVDPLLA 254 (486)
Q Consensus 189 ~~a----------~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~----~~t~tG~id~l~~ 254 (486)
... ++..|+ +++.+|++++ +.+|+++|++++++. +.+|+++. ++|++|.+.|+++
T Consensus 116 ~~~~~~~g~~~~~l~~~G~---~~~~v~~~~~--g~~d~e~l~~ai~~~------tklV~i~~s~g~p~nptg~v~~l~~ 184 (409)
T 3jzl_A 116 EEIVGIRKQGQGSLKDFHI---GYSSVPLLEN--GDVDFPRIAKKMTPK------TKMIGIQRSRGYADRPSFTIEKIKE 184 (409)
T ss_dssp HHHHTSSSSSSSCTGGGTC---EEEECCCCTT--SCCCHHHHHHHCCTT------EEEEEEECSCTTSSSCCCCHHHHHH
T ss_pred HHHHhcccchhhHHHHcCC---EEEEeCCCCC--CCcCHHHHHHhccCC------CeEEEEECCCCCCCCCcCccccHHH
Confidence 754 355678 8888888754 699999999998653 46888888 9999999999999
Q ss_pred HHHHHHH--hCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCC--cceEEEEeCchHHHHHhcC-Ccc
Q 041829 255 LGNIAKS--NGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNF--DCSALWVKDRNTLIQSLST-NPE 329 (486)
Q Consensus 255 I~~ia~~--~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~--~~g~l~~r~~~~~~~~~~~-~~~ 329 (486)
|+++|++ +|+++|||++|+.+....... . .++|.++.++||+++++. ..|+++.+ ++.+.+.... ..+
T Consensus 185 I~~la~~~~~~~~livD~a~~~~~~~~~p~-~-----~g~Div~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~ 257 (409)
T 3jzl_A 185 MIVFVKNINPEVIVFVDNCYGEFVEYQEPP-E-----VGADIIAGSLIKNPGGGLAKTGGYIAGK-EALVDLCGYRLTTP 257 (409)
T ss_dssp HHHHHHHHCTTCEEEEECTTCTTTSSCCSG-G-----GTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCT
T ss_pred HHHHHHhhCCCCEEEEeCCcccccccCCcc-c-----cCCeEEEECccccCCccCCceEEEEEeC-HHHHHHHHHHhccc
Confidence 9999999 999999999998654221111 1 168999999999998753 24666554 4443332211 112
Q ss_pred cccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCce----
Q 041829 330 FLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFS---- 405 (486)
Q Consensus 330 yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~---- 405 (486)
++.. ..+.... ..|++++ |......++++..++++++++.|+++ ++++... ...
T Consensus 258 ~~g~----------------~~g~~~~--~~~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~v~p~-~~~~~~~ 315 (409)
T 3jzl_A 258 GIGR----------------EAGASLY--SLLEMYQ--GFFLAPHVTAQAIKGARFTAAMLAEF-GVEADPV-WDAPRTD 315 (409)
T ss_dssp TTGG----------------GCCCCTT--CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSS
T ss_pred cccc----------------cccccHH--HHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHhC-CCcccCC-CCCCCcc
Confidence 2211 1111111 1233433 33455678889999999999999998 6787432 223
Q ss_pred -EEEEEecCCCCCcccchHHHHHHHHHHHcc
Q 041829 406 -LVCFRLLPPHNDEDHGNKLNHKLLDDINST 435 (486)
Q Consensus 406 -~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~ 435 (486)
+++|.+.. .+...++++.|...
T Consensus 316 ~i~~i~l~~--------~~~~~~~~~~L~~~ 338 (409)
T 3jzl_A 316 LIQSVSFHN--------KEKMVAFAQAIQAA 338 (409)
T ss_dssp SCCEEECSC--------HHHHHHHHHHHHHT
T ss_pred EEEEEEeCC--------HHHHHHHHHHHHhc
Confidence 67777742 34445677777654
No 201
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.80 E-value=1.8e-17 Score=168.25 Aligned_cols=301 Identities=14% Similarity=0.076 Sum_probs=181.7
Q ss_pred HHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCC-CeEEEecCCCchhHHHHHHHhC-
Q 041829 119 MIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLE-KLVVYASDQTHSALQKACQIGG- 196 (486)
Q Consensus 119 ~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~-~~~v~~s~~~H~s~~~a~~~~g- 196 (486)
.++.+++++++|.+ ..++++|||+|+..++.+++.......+.. .+ +.+|+.....|.+...++...|
T Consensus 121 ~~l~~~la~~~g~~---------~v~~~~sGseA~~~al~~~~~~~~~~~g~~-~g~~~vi~~~~~yhg~~~~~~~~~g~ 190 (439)
T 2oat_A 121 GEYEEYITKLFNYH---------KVLPMNTGVEAGETACKLARKWGYTVKGIQ-KYKAKIVFAAGNFWGRTLSAISSSTD 190 (439)
T ss_dssp HHHHHHHHHHHTCS---------EEEEESSHHHHHHHHHHHHHHHHHHTTCCC-TTCCEEEEETTCCCCSSHHHHTTCCC
T ss_pred HHHHHHHHHhcCCC---------EEEEeCCHHHHHHHHHHHHHHHhhhccCCC-CCCCeEEEEcCCCCCCCHhHhhcCCC
Confidence 33444577777743 389999999999999998875321110000 02 3344445555766666665544
Q ss_pred ------CCC--CCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC----ChHHHHHHHHHhCC
Q 041829 197 ------IHP--QNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD----PLLALGNIAKSNGM 264 (486)
Q Consensus 197 ------~g~--~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id----~l~~I~~ia~~~g~ 264 (486)
.+. ..++.+|. .|+++|+++|+. ..+.+|+++...+++|.+. ++++|.++|++||+
T Consensus 191 ~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gi 258 (439)
T 2oat_A 191 PTSYDGFGPFMPGFDIIPY-------NDLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQV 258 (439)
T ss_dssp HHHHTTSCSCCTTEEEECS-------SCHHHHHHHTTS-----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTC
T ss_pred hhcccCCCCCCCCeEEeCC-------CCHHHHHHHhCC-----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 110 25666664 289999998852 1245677766666789765 79999999999999
Q ss_pred EEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCCcccccccccccCCccC
Q 041829 265 WFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVD 343 (486)
Q Consensus 265 ~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~ 343 (486)
++++|++|.++......+.....++ ..|.+ +..|++++. ...|+++.++ + +.+.+.. ..
T Consensus 259 llI~DEv~~g~g~~g~~~~~~~~~~-~~Di~--t~sK~l~~G~~~~G~v~~~~-~-~~~~l~~---~~------------ 318 (439)
T 2oat_A 259 LFIADEIQTGLARTGRWLAVDYENV-RPDIV--LLGKALSGGLYPVSAVLCDD-D-IMLTIKP---GE------------ 318 (439)
T ss_dssp EEEEECTTTTTTTTSSSSGGGGGTC-CCSEE--EECGGGGTTSSCCEEEEECH-H-HHTTSCT---TS------------
T ss_pred EEEEeccccCCccCCcchhHHHhCC-CCcEE--EecccccCCCCCeEEEEECH-H-HHhccCC---CC------------
Confidence 9999999976422111111011122 46766 456999865 5689988875 2 2222211 00
Q ss_pred CCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEe--cCCCceEEEEEecCCCCCcccc
Q 041829 344 YKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVV--TPRIFSLVCFRLLPPHNDEDHG 421 (486)
Q Consensus 344 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~--~~~~~~~v~f~~~~~~~~~~~~ 421 (486)
...+. .+.......+.++++.+..+ ++.++..++++++++.|+++ ++.++ .++...++.+.+....
T Consensus 319 -~~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~------ 386 (439)
T 2oat_A 319 -HGSTY-GGNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETK------ 386 (439)
T ss_dssp -SCCSS-TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEECCCS------
T ss_pred -cccCC-CcCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEecCc------
Confidence 00011 11111222344455544332 45677888999999999886 33221 1234456667664321
Q ss_pred hHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 422 NKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 422 ~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
.....++.+.|.++| +.+.+ .+..++|+++ +..+|++|+++++++|+++.++
T Consensus 387 ~~~~~~l~~~l~~~G-v~v~~---~~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 387 DWDAWKVCLRLRDNG-LLAKP---THGDIIRFAP-PLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp SCCHHHHHHHHHHTT-EECCB---SSSSEEEECC-CTTCCHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHCC-eEEec---CCCCEEEEEC-ccCCCHHHHHHHHHHHHHHHHh
Confidence 001246778888887 55544 2346899998 7788999999999999987653
No 202
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.79 E-value=6.3e-17 Score=165.18 Aligned_cols=327 Identities=12% Similarity=0.066 Sum_probs=187.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEe-cCCCchhHHHHH
Q 041829 114 ATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYA-SDQTHSALQKAC 192 (486)
Q Consensus 114 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~-s~~~H~s~~~a~ 192 (486)
..+...++.++++++++.+.+ ..++++|||+|+..|+.+++...... +.. ++..|++ ....|.....+.
T Consensus 92 ~~~~~~~la~~l~~~~~~~~~-------~v~~~~ggseA~~~al~~~~~~~~~~-g~~--~~~~vi~~~~~yhg~~~~~~ 161 (459)
T 4a6r_A 92 THPAVVELSSLLAEVTPAGFD-------RVFYTNSGSESVDTMIRMVRRYWDVQ-GKP--EKKTLIGRWNGYHGSTIGGA 161 (459)
T ss_dssp CCHHHHHHHHHHHHHSCTTCC-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCT--TCCEEEEETTCCCCSSHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCC-------EEEEeCchHHHHHHHHHHHHHHHHhc-CCC--CCCEEEEECCCcCCccHHHH
Confidence 355667778889999876543 48999999999999999988643211 111 2344544 444454443333
Q ss_pred HHhCCC---------CCCeEEEeCCC--C-CCCccC--------HHHHHHHHHHHHhCCCccEEEEEecCCccccccCC-
Q 041829 193 QIGGIH---------PQNFRVLKTDS--S-TNYSLS--------PDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP- 251 (486)
Q Consensus 193 ~~~g~g---------~~~v~~v~~~~--~-~~~~id--------~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~- 251 (486)
...|.. ...+..++... . +++ +| +++|++++++... ..+.+|+++...+++|.+.|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~--~~~~~vi~ep~~~~~G~~~~~ 238 (459)
T 4a6r_A 162 SLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGA--DKVAAFVGEPIQGAGGVIVPP 238 (459)
T ss_dssp HHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCG--GGEEEEEECSSBTTTTCBCCC
T ss_pred hhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCC--CCEEEEEECCccCCCCcccCC
Confidence 332221 11445565432 0 112 45 7889988875211 12467777777777888877
Q ss_pred ---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCC
Q 041829 252 ---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTN 327 (486)
Q Consensus 252 ---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~ 327 (486)
+++|.++|++||+++++|++|.++......+.....++ ..|.++++ |.++.. ...|+++.++ +.. +.+...
T Consensus 239 ~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~-~pdi~t~s--K~l~gg~~~lg~v~~~~-~i~-~~~~~~ 313 (459)
T 4a6r_A 239 ATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGF-QPDLFTAA--KGLSSGYLPIGAVFVGK-RVA-EGLIAG 313 (459)
T ss_dssp TTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEEC--GGGGTTSSCCEEEEECH-HHH-HHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCC-CCCeeehh--hhhcCCCCCccceeeCH-HHH-HHhhcC
Confidence 99999999999999999999987532221111111122 46777765 988765 4678887754 322 222210
Q ss_pred cccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHH-HHHHHHHHH----HhcCCCeEEecCC
Q 041829 328 PEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHI-QLAKHFEGL----VAQDLRFEVVTPR 402 (486)
Q Consensus 328 ~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~-~~a~~l~~~----l~~~~~~~~~~~~ 402 (486)
..+.... +. .+.++...++.++++.+..+. ++++.. ++.+++++. |.++|.+..+ .+
T Consensus 314 ~~~~~~~-------------t~-~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~ 375 (459)
T 4a6r_A 314 GDFNHGF-------------TY-SGHPVCAAVAHANVAALRDEG---IVQRVKDDIGPYMQKRWRETFSRFEHVDDV-RG 375 (459)
T ss_dssp CTTHHHH-------------HH-CSCHHHHHHHHHHHHHHHHTC---HHHHHHHTHHHHHHHHHHHHHTTCTTEEEE-EE
T ss_pred CCcccCC-------------CC-CCCHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EE
Confidence 0000000 00 111111223333344332233 334444 444444444 4556655544 34
Q ss_pred CceEEEEEecCCCCCc---ccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 403 IFSLVCFRLLPPHNDE---DHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 403 ~~~~v~f~~~~~~~~~---~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
...++.+.+....... ........++.+.+.++| +.+.+. + .++|+++ +...|++++++++++|+++.+++
T Consensus 376 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~---g-~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 376 VGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNN-LIMRAC---G-DHIVSAP-PLVMTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp ETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTT-EECEEE---T-TEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEecCccccccccchHHHHHHHHHHHHHCC-eEEecC---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 4456666664321100 001233567888888888 444443 2 6899998 77889999999999999998876
Q ss_pred HHh
Q 041829 480 LAR 482 (486)
Q Consensus 480 ~~~ 482 (486)
...
T Consensus 450 ~~~ 452 (459)
T 4a6r_A 450 EQT 452 (459)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 203
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.79 E-value=3.1e-18 Score=170.06 Aligned_cols=296 Identities=13% Similarity=0.060 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCC---CchhHHHH
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQ---THSALQKA 191 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~---~H~s~~~a 191 (486)
..+|+++.+++++++|.++. ...++++|||+++..++.+. +++.|+++.. .|+++...
T Consensus 57 ~~~~~~~~~~~a~~~g~~~~------~~~~~~~ggt~a~~~~~~~~-------------~gd~Vl~~~~~y~~~~~~~~~ 117 (374)
T 2aeu_A 57 SYFAEKVNEYGLKHLGGDEN------DKCVGFNRTSSAILATILAL-------------KPKKVIHYLPELPGHPSIERS 117 (374)
T ss_dssp HHHHHHHHHHHHHHHTCCTT------EEEEEESSHHHHHHHHHHHH-------------CCSEEEEECSSSSCCTHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCc------ceEEEEcChHHHHHHHHHhC-------------CCCEEEEecCCCCccHHHHHH
Confidence 45677788888999998421 14799999999998888754 2445667776 46666667
Q ss_pred HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEE-EEEecCCcccc-ccCChHHHHHHHHHhCCEEEee
Q 041829 192 CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFF-LCATVGTTSST-AVDPLLALGNIAKSNGMWFHVD 269 (486)
Q Consensus 192 ~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~-vv~~~~~t~tG-~id~l~~I~~ia~~~g~~lhvD 269 (486)
++..|+ +++.+ +|+++|+++ ++ ++.+ |+++.++|++| ...|+++|.++|+++|+++|+|
T Consensus 118 ~~~~g~---~~~~v---------~d~~~l~~~-~~------~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~D 178 (374)
T 2aeu_A 118 CKIVNA---KYFES---------DKVGEILNK-ID------KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVD 178 (374)
T ss_dssp HHHTTC---EEEEE---------SCHHHHHTT-CC------TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHcCc---EEEEe---------CCHHHHHhc-CC------CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEE
Confidence 888888 87776 278888776 22 2567 88889999999 8999999999999999999999
Q ss_pred ccccchhccCccchh-cccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCc
Q 041829 270 AAYAGSACICPEYRQ-YIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQ 348 (486)
Q Consensus 270 ~A~g~~~~~~~~~~~-~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 348 (486)
++|+.+.. .+.... ... .+.|.++.++||++++| .+|+++.++ +.+. .+.....+
T Consensus 179 e~~~~~~~-~~~~~~~~~~--~~~di~~~S~sK~l~g~-~~G~~~~~~-~~~~-~l~~~~~~------------------ 234 (374)
T 2aeu_A 179 DASGARVR-LLFNQPPALK--LGADLVVTSTDKLMEGP-RGGLLAGKK-ELVD-KIYIEGTK------------------ 234 (374)
T ss_dssp CTTHHHHH-HHTTCCCHHH--HTCSEEEEETTSSSSSC-SCEEEEEEH-HHHH-HHHHHHHT------------------
T ss_pred CCcccccc-cccccCCccc--cCCcEEEecCcccccCc-ceEEEEECH-HHHH-HHHHhhcc------------------
Confidence 99976541 011000 010 15799999999998765 788877764 3222 22110000
Q ss_pred cCCCCCCCcHH---HHHHHHHhChhhHHHHHHHHHHH----HHHHHHHHhcC---CCeEEecCCCceEEEEEecCCCCCc
Q 041829 349 IPLGRRFRSLK---LWMVLRLYGLENLQGYIRNHIQL----AKHFEGLVAQD---LRFEVVTPRIFSLVCFRLLPPHNDE 418 (486)
Q Consensus 349 ~~~sr~~~~l~---~~~~l~~~g~~g~~~~~~~~~~~----a~~l~~~l~~~---~~~~~~~~~~~~~v~f~~~~~~~~~ 418 (486)
.+.....+. +..+++.+..+.+++..++...+ .+.+.+.|..+ +++.+...+.. .+.+......
T Consensus 235 --~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g-~~~~~~~~~~--- 308 (374)
T 2aeu_A 235 --FGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTG-FVIKRVYKDD--- 308 (374)
T ss_dssp --TTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSE-EEEEEEESSH---
T ss_pred --ccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCce-EEEEeecccc---
Confidence 000112223 33344443332344444444444 35556666554 35666444443 3333322110
Q ss_pred ccch-HHHHHHHHHHH-ccCcEEEEee-eE-CCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 041829 419 DHGN-KLNHKLLDDIN-STGKIFISHT-VL-SGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 419 ~~~~-~~~~~l~~~l~-~~g~~~~~~~-~~-~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
..+ ....++...+. +.| +.+.+. .+ .+..++|++++....++.+++++.++|+++.+++.
T Consensus 309 -~~~~~~~~~~~~~ll~~~g-V~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 309 -TINIKKLIEIGFNLLKNYG-IITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp -HHHHHHHHHHHHHHHHHHC-EECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred -cccccchHHHHHHHHHhCC-EEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 000 01122444444 456 444433 22 23458999995555566669999999988877664
No 204
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.79 E-value=1.8e-16 Score=161.31 Aligned_cols=324 Identities=14% Similarity=0.104 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEe-cCCCchhHHHHHHH
Q 041829 116 ELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYA-SDQTHSALQKACQI 194 (486)
Q Consensus 116 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~-s~~~H~s~~~a~~~ 194 (486)
+...++.+.++++++.+.+ ..++|+|||+|+..++.+++.... ..+.. +++.|++ +...|.+...++..
T Consensus 93 ~~~~~l~~~la~~~~~~~~-------~v~~~~ggsea~~~al~~~~~~~~-~~g~~--~~~~vi~~~~~yhg~~~~~~~~ 162 (449)
T 3a8u_X 93 PLSFQLAEKITDLTPGNLN-------HVFFTDSGSECALTAVKMVRAYWR-LKGQA--TKTKMIGRARGYHGVNIAGTSL 162 (449)
T ss_dssp HHHHHHHHHHHTTSSTTEE-------EEEEESSHHHHHHHHHHHHHHHHH-HTTCT--TCCEEEEETTCCCCSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCC-------EEEEcCcHHHHHHHHHHHHHHHHH-hcCCC--CCCEEEEECCCcCCCChhhhhc
Confidence 3445556668888875443 589999999999999988775321 10100 2344444 55566666666665
Q ss_pred hCC-------C--CCCeEEEeCCCC--CCC-ccC--------HHHHHHHHHHHHhCCCccEEEEEecCCccccccCC---
Q 041829 195 GGI-------H--PQNFRVLKTDSS--TNY-SLS--------PDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP--- 251 (486)
Q Consensus 195 ~g~-------g--~~~v~~v~~~~~--~~~-~id--------~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~--- 251 (486)
.|. + ...+..++++.. .++ .+| +++|+++|++.. ...+.+|+++...+++|.+.|
T Consensus 163 ~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~tG~~~~~~~ 240 (449)
T 3a8u_X 163 GGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD--ASNIAAVFVEPLAGSAGVLVPPEG 240 (449)
T ss_dssp CCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTT
T ss_pred cCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCCccCCHH
Confidence 542 1 114566665421 000 256 999999997531 012456666666667998888
Q ss_pred -hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCCcc
Q 041829 252 -LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTNPE 329 (486)
Q Consensus 252 -l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~~~ 329 (486)
+++|.++|++||+++++|++|.++......+.....++ ..|.+++ .|+++.. ...|++++++ +.. +.+.....
T Consensus 241 ~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~-~~di~s~--sK~l~~G~~~~G~~~~~~-~~~-~~l~~~~~ 315 (449)
T 3a8u_X 241 YLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGV-TPDLMCI--AKQVTNGAIPMGAVIAST-EIY-QTFMNQPT 315 (449)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSSCCEEEEEEH-HHH-HHHHTCSS
T ss_pred HHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCC-CCCEEEE--cccccCCCCceEEEEECH-HHH-HHhhccCc
Confidence 99999999999999999999965432111111011122 3576654 5998753 3488888764 333 33322100
Q ss_pred cccccccccCCccCCCCCccCCCCCCCcHH---HHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEe--cCCCc
Q 041829 330 FLKNKASQANMVVDYKDWQIPLGRRFRSLK---LWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVV--TPRIF 404 (486)
Q Consensus 330 yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~---~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~--~~~~~ 404 (486)
.. . ...+....+-....+. +.++++.+..+ ++.++..++.+++++.|++++++.++ .++..
T Consensus 316 ---~~--~------~~~~~~~~t~~~~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g 381 (449)
T 3a8u_X 316 ---PE--Y------AVEFPHGYTYSAHPVACAAGLAALCLLQKE---NLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFG 381 (449)
T ss_dssp ---CT--T------SCSSCCCCTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEET
T ss_pred ---cc--c------cccccccCCCcccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeE
Confidence 00 0 0000000111112233 33344433222 46677888889999999875333211 12344
Q ss_pred eEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 405 SLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 405 ~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
+++.+.+..... . ......++.+.|.++| +.+.+. + .++|+++ ...+|++|+++++++|+++.+++
T Consensus 382 ~~~~i~~~~~~~-~--~~~~~~~~~~~l~~~G-v~v~~~---g-~~iRis~-~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 382 LAGAIQIAPRDG-D--AIVRPFEAGMALWKAG-FYVRFG---G-DTLQFGP-TFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp TEEEEEECCBTT-B--SSHHHHHHHHHHHHHT-EECEEE---T-TEEEECC-CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEecCcc-c--ccccHHHHHHHHHHCC-cEEecC---C-CEEEEEC-CCcCCHHHHHHHHHHHHHHHHHH
Confidence 567777653210 0 0001124777777777 555543 3 6899998 66889999999999999887653
No 205
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.79 E-value=2.9e-17 Score=167.38 Aligned_cols=314 Identities=11% Similarity=-0.020 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEe-cCCCchhHHHHHH
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYA-SDQTHSALQKACQ 193 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~-s~~~H~s~~~a~~ 193 (486)
.+...++.++++++++.+.+ ..+|++|||+||..|+.+++...... +.. ++..|++ ....|.....+..
T Consensus 117 ~~~~~~L~e~la~~~~~~~~-------~v~~~~sGseA~~~Alk~a~~~~~~~-g~~--g~~~ii~~~~~yhg~~~~~~~ 186 (457)
T 3tfu_A 117 HEPAARLAKLLVDITPAGLD-------TVFFSDSGSVSVEVAAKMALQYWRGR-GLP--GKRRLMTWRGGYHGDTFLAMS 186 (457)
T ss_dssp CHHHHHHHHHHHHHSSTTEE-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCT--TCCEEEEETTCCCCSSHHHHT
T ss_pred CHHHHHHHHHHHHhCCCCcC-------EEEEeCcHHHHHHHHHHHHHHHHHhc-CCC--CCceEEEEcCCcCCccHHhhc
Confidence 34445666669999975543 48999999999999999888643221 111 3334444 4444554433332
Q ss_pred HhC-C---------CCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEec-CCccccccCC----hHHHHHH
Q 041829 194 IGG-I---------HPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATV-GTTSSTAVDP----LLALGNI 258 (486)
Q Consensus 194 ~~g-~---------g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~-~~t~tG~id~----l~~I~~i 258 (486)
..+ . ....+..+|....+....|+++|+++|++... .+.+|++.. .++++|.+-| +++|.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~---~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l 263 (457)
T 3tfu_A 187 ICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAG---ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDI 263 (457)
T ss_dssp TSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGG---GEEEEEECSSEECTTTCEECCTHHHHHHHHH
T ss_pred ccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCC---CEEEEEEeCCCcCCCCcccCCHHHHHHHHHH
Confidence 211 0 01134555554332224689999999975321 356777777 7788998866 9999999
Q ss_pred HHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCC-cceEEEEeCchHHHHHhcCC-ccccccccc
Q 041829 259 AKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNF-DCSALWVKDRNTLIQSLSTN-PEFLKNKAS 336 (486)
Q Consensus 259 a~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~-~~g~l~~r~~~~~~~~~~~~-~~yl~~~~~ 336 (486)
|++||+++++|++|.++......+.....++ ..|.+++ .|.+++.+ ..|+++.+++ +.+.+... +.-+..
T Consensus 264 ~~~~gillI~DEv~~g~gr~G~~~a~~~~~~-~pdiit~--sK~l~gG~~~lG~v~~~~~--i~~~~~~~~~~~~~~--- 335 (457)
T 3tfu_A 264 CRRYEVLLIFDEIATGFGRTGALFAADHAGV-SPDIMCV--GKALTGGYLSLAATLCTAD--VAHTISAGAAGALMH--- 335 (457)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEE--CGGGGTTSSCCEEEEEEHH--HHHHHHHSSSCSCCC---
T ss_pred HHHcCCEEEEEcCccCCccccchhHhHhcCC-CceEEEE--ChhhhCCCcceEEEEEcHH--HHHHhhccCCCceeE---
Confidence 9999999999999986532211111011122 4677765 49887753 6888887653 22233210 110000
Q ss_pred ccCCccCCCCCccCCCCCCCcHHHH---HHHHHhChhhHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCCCceEEEEE
Q 041829 337 QANMVVDYKDWQIPLGRRFRSLKLW---MVLRLYGLENLQGYIRNHIQLAKHFEGLVAQD---LRFEVVTPRIFSLVCFR 410 (486)
Q Consensus 337 ~~~~~~~~~~~~~~~sr~~~~l~~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~---~~~~~~~~~~~~~v~f~ 410 (486)
..+-....+... ++++.+..+ ++.++..++.+++++.|+++ |++..+ .+...++.+.
T Consensus 336 -------------~~t~~~n~~a~aaa~aaL~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~ 398 (457)
T 3tfu_A 336 -------------GPTFMANPLACAVSVASVELLLGQ---DWRTRITELAAGLTAGLDTARALPAVTDV-RVCGAIGVIE 398 (457)
T ss_dssp -------------CCTTTTCHHHHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHGGGGGSTTEEEE-EECSSCEEEE
T ss_pred -------------ecCCCcCHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHhcCCCeeee-ecCCeEEEEE
Confidence 011112333333 334433222 45566777888888888764 455433 2334566676
Q ss_pred ecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 041829 411 LLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 411 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
+.... + ..++.+.|.++| +++.+. + .++|+++ ....|++|+++++++|+++.+++.
T Consensus 399 l~~~~------~--~~~~~~~l~~~G-v~v~~~---~-~~lRi~p-~~~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 399 CDRPV------D--LAVATPAALDRG-VWLRPF---R-NLVYAMP-PYICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp ESSCC------C--HHHHHHHHHHTT-EECCCB---T-TEEEECC-CTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred ECCcc------c--HHHHHHHHHHCC-eEEEec---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 64311 1 256778888888 444432 2 4899987 667799999999999999887643
No 206
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.79 E-value=2.2e-17 Score=167.24 Aligned_cols=320 Identities=12% Similarity=0.058 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEe-cCCCchhHHHHHHH
Q 041829 116 ELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYA-SDQTHSALQKACQI 194 (486)
Q Consensus 116 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~-s~~~H~s~~~a~~~ 194 (486)
....++.+.++++++.+.+ ..++|+||++|+..++.+++... ++..|++ ....|.+...+...
T Consensus 85 ~~~~~l~~~la~~~~~~~~-------~v~~~~gg~ea~~~a~~~~~~~~---------~~~~vi~~~~~yhg~~~~~~~~ 148 (433)
T 1zod_A 85 RPVVDLATRLANITPPGLD-------RALLLSTGAESNEAAIRMAKLVT---------GKYEIVGFAQSWHGMTGAAASA 148 (433)
T ss_dssp HHHHHHHHHHHHHSCTTCC-------EEEEESCHHHHHHHHHHHHHHHH---------TCCEEEEETTCCCCSSHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCcC-------EEEEeCchHHHHHHHHHHHHHhh---------CCCeEEEECCCcCCCChhHHhh
Confidence 3445556668999986543 58999999999999998776421 3334444 44456555544443
Q ss_pred hCC--------CCCCeEEEeCCCC--CC--------CccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----h
Q 041829 195 GGI--------HPQNFRVLKTDSS--TN--------YSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP----L 252 (486)
Q Consensus 195 ~g~--------g~~~v~~v~~~~~--~~--------~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~----l 252 (486)
.+. -...++.++++.. .. +.+|+++|++++++. ....+.+|+++..++++|.+-| +
T Consensus 149 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l 226 (433)
T 1zod_A 149 TYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYM 226 (433)
T ss_dssp CCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHH--CCSCEEEEEECSEETTTTCEECCTTHH
T ss_pred cCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhc--CCCCeEEEEEccccCCCCcccCCHHHH
Confidence 221 0124566665321 00 135799999999753 1123456666655577897655 9
Q ss_pred HHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCccccc
Q 041829 253 LALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLK 332 (486)
Q Consensus 253 ~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~ 332 (486)
++|+++|++||+++++|++|+++......+.....++ ..|.+++ .|+++.+..+|+++.++ +.. +.+... .+..
T Consensus 227 ~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~-~~di~s~--sK~~~~G~~ig~~~~~~-~~~-~~~~~~-~~~~ 300 (433)
T 1zod_A 227 AALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGV-TPDILTL--SKTLGAGLPLAAIVTSA-AIE-ERAHEL-GYLF 300 (433)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEE--CHHHHTTSSCEEEEECH-HHH-HHHHHT-TCCC
T ss_pred HHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCC-CCCEEEe--cccccCCCCeeEEEEhH-HHH-HhhccC-CCCC
Confidence 9999999999999999999986532211111001122 3566554 49988777789988865 322 222211 0100
Q ss_pred ccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhc----CCCeEEecCCCceEEE
Q 041829 333 NKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQ----DLRFEVVTPRIFSLVC 408 (486)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~v~ 408 (486)
.. +. .+..+...++.++++.+..+ ++.++..++++++++.|++ .|.+..+ ++..+++.
T Consensus 301 ~~-------------t~-~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~ 362 (433)
T 1zod_A 301 YT-------------TH-VSDPLPAAVGLRVLDVVQRD---GLVARANVMGDRLRRGLLDLMERFDCIGDV-RGRGLLLG 362 (433)
T ss_dssp CC-------------TT-TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEE
T ss_pred CC-------------CC-CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEE
Confidence 00 00 11111122233444433222 3456667777788777765 3544433 33445666
Q ss_pred EEecCCCCCcccchHHHHHHHHHHHccCcEEEEeee-ECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 409 FRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTV-LSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 409 f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
+.+...............++.+.|.+.| +.+.+.. +.+..++|+++ +..++++++++++++|+++.+++
T Consensus 363 i~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~~~~~~~~~lRi~~-~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 363 VEIVKDRRTKEPADGLGAKITRECMNLG-LSMNIVQLPGMGGVFRIAP-PLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp EEEEEETTTTEECTTHHHHHHHHHHHTT-EECCEECCTTSCCEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCccccCCChHHHHHHHHHHHHCC-CeEeccCCCCCCCEEEEEC-CcCCCHHHHHHHHHHHHHHHHHh
Confidence 6654210000000123456778888777 4444433 22236899988 77889999999999999887654
No 207
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.79 E-value=1.2e-16 Score=162.93 Aligned_cols=324 Identities=12% Similarity=0.052 Sum_probs=182.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHH
Q 041829 113 AATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKAC 192 (486)
Q Consensus 113 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~ 192 (486)
...+...++.++++++++.+.+ .+||+|||+|+..|+.+++...... +.. .++.+|......|.....+.
T Consensus 88 ~~~~~~~~la~~l~~~~~~~~~--------v~~~~ggseA~~~al~~~~~~~~~~-g~~-~~~~vi~~~~~yhg~~~~~~ 157 (452)
T 3n5m_A 88 QSHEPAIKLAEKLNEWLGGEYV--------IFFSNSGSEANETAFKIARQYYAQK-GEP-HRYKFMSRYRGYHGNTMATM 157 (452)
T ss_dssp SEEHHHHHHHHHHHHHHTSCEE--------EEEESSHHHHHHHHHHHHHHHHHTT-TCT-TCCEEEEETTCCCCSSHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCce--------EEEeCchHHHHHHHHHHHHHHHHhc-CCC-CCCEEEEECCCcCCCCHHHH
Confidence 3456777788889999986542 8999999999999999887532110 000 02334444444454444343
Q ss_pred HHhCCC---------CCCeEEEeCCCCCCC----------ccCHHHHHHHHHHHHhCCCccEEEEEecC-CccccccCC-
Q 041829 193 QIGGIH---------PQNFRVLKTDSSTNY----------SLSPDSLAEAISRDLTIGLIPFFLCATVG-TTSSTAVDP- 251 (486)
Q Consensus 193 ~~~g~g---------~~~v~~v~~~~~~~~----------~id~~~L~~~i~~~~~~g~~p~~vv~~~~-~t~tG~id~- 251 (486)
...|.. ...+..+|....-.+ ..++++|++++++. ....+.+|+++.. .+ +|.+-|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~~~vi~ep~~~n-~G~~~~~ 234 (452)
T 3n5m_A 158 AATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWE--LSETIAAFIMEPIITG-GGILMAP 234 (452)
T ss_dssp HSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHH--CGGGEEEEEECSSBTT-TTCBCCC
T ss_pred hcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhc--CCCCEEEEEEccccCC-CCeeeCC
Confidence 332221 113455554211000 11289999999732 1123456777776 68 998876
Q ss_pred ---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcC-
Q 041829 252 ---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLST- 326 (486)
Q Consensus 252 ---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~- 326 (486)
+++|.++|++||+++|+|++|.++......+.....++ ..|.++++ |.++.. ...|+++.++. +.+.+..
T Consensus 235 ~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~-~~di~t~s--K~l~~G~~~ig~~~~~~~--i~~~~~~~ 309 (452)
T 3n5m_A 235 QDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDV-KPDIITMA--KGITSAYLPLSATAVKRE--IYEAFKGK 309 (452)
T ss_dssp TTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC-CCSEEEEC--GGGGTTSSCCEEEEEEHH--HHGGGCSS
T ss_pred HHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCC-CCCEEeec--ccccCCCcceEEEEECHH--HHHHHhhc
Confidence 99999999999999999999987532211111111122 35777654 888766 67888877542 3333322
Q ss_pred --CcccccccccccCCccCCCCCccCCCCCCCcHHHHHH---HHHhChhhHHHHHHHHHHHHHHHHHHHh----cCCCeE
Q 041829 327 --NPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMV---LRLYGLENLQGYIRNHIQLAKHFEGLVA----QDLRFE 397 (486)
Q Consensus 327 --~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~---l~~~g~~g~~~~~~~~~~~a~~l~~~l~----~~~~~~ 397 (486)
...++. ..+-....+...++ ++.+..+ +++++..++.+++++.|+ ++|.+.
T Consensus 310 ~~~~~~~~-----------------~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 369 (452)
T 3n5m_A 310 GEYEFFRH-----------------INTFGGNPAACALALKNLEIIENE---NLIERSAQMGSLLLEQLKEEIGEHPLVG 369 (452)
T ss_dssp STTCSCCC-----------------CCSSTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred cCCCCccc-----------------cCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 011110 01111233333333 3333222 344555555566655554 456554
Q ss_pred EecCCCceEEEEEecCCCCCccc-chHHHHHHHHHHHccCcEEEEeeeE---CCEeEEEEEecCCCCCHHHHHHHHHHHH
Q 041829 398 VVTPRIFSLVCFRLLPPHNDEDH-GNKLNHKLLDDINSTGKIFISHTVL---SGKYILRFAVGAPLTEWRHVNAAWEVMQ 473 (486)
Q Consensus 398 ~~~~~~~~~v~f~~~~~~~~~~~-~~~~~~~l~~~l~~~g~~~~~~~~~---~~~~~lRi~~~~~~~t~~di~~~~~~l~ 473 (486)
.+ ++...++.+.+......... ......++.+.+.++|. .+.+... .+..++|+++ +...|+++|++++++|+
T Consensus 370 ~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv-~~~~~~~~~~~~~~~iRi~~-~~~~t~e~i~~~l~~l~ 446 (452)
T 3n5m_A 370 DI-RGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGL-IIGRNGMTTAGYNNILTLAP-PLVISSEEIAFVIGTLK 446 (452)
T ss_dssp EE-EESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTE-ECEECTTSSTTCCCEEEECC-CTTCCHHHHHHHHHHHH
T ss_pred EE-EEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCc-EEeecCcccCCCCCEEEEEC-CCCCCHHHHHHHHHHHH
Confidence 44 23334455544221100000 02234567788888884 4443321 1246899998 77889999999999999
Q ss_pred HHHH
Q 041829 474 DKAS 477 (486)
Q Consensus 474 ~~~~ 477 (486)
++.+
T Consensus 447 ~~l~ 450 (452)
T 3n5m_A 447 TAME 450 (452)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8764
No 208
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.78 E-value=1.7e-17 Score=166.79 Aligned_cols=310 Identities=10% Similarity=0.041 Sum_probs=190.7
Q ss_pred cCcCccccccChhhHHHHHHHHHHHHHHcCCC-----CCCcCCCCCCe--EEcCchhHHHHHHHHHHHHHHHHHhCccCC
Q 041829 101 LNIVGFSWITSPAATELEMIVLDWLAKLLKLP-----EDFLSSGQGGG--VIQGTASEAVLVVLLAARDKALKRVGKNSL 173 (486)
Q Consensus 101 ~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~-----~~~~~~~~~~~--~~t~ggt~a~~~al~~a~~~~~~~~~~~~~ 173 (486)
.......|...++..++++++.+|+. |.. ++ .. ..|.+|+.++..+...++.. ..
T Consensus 68 ~~~~~~~y~~~~g~~~lr~~ia~~~~---~~~~~~~~~~-------~i~~~~~~~g~ga~~~~~~~~~~~--------~~ 129 (409)
T 4eu1_A 68 TLGTNMDYAPVTGIASFVEEAQKLCF---GPTCAALRDG-------RIASCQTLGGTGALRIGGDLLNRF--------VA 129 (409)
T ss_dssp CCCSCCCCCCTTCCHHHHHHHHHHHH---CSSCHHHHTT-------CEEEEEESHHHHHHHHHHHHGGGT--------SS
T ss_pred CccccccCCCCCCcHHHHHHHHHHHc---CCCchhhccC-------ceeeeecccchHHHHHHHHHHHHh--------cC
Confidence 33334456556677889998776662 443 21 23 34888888876654433211 01
Q ss_pred CCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC--
Q 041829 174 EKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP-- 251 (486)
Q Consensus 174 ~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~-- 251 (486)
+++.|+++..+|.++...++..|. +++.+|++.++++.+|+++|++++++.. ..+.+++++.++|+||.+-+
T Consensus 130 ~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~i~~~~p~NPtG~~~~~~ 203 (409)
T 4eu1_A 130 NCNRIYGPDVGYPNHESIFAKAGM---ELTPYSYYDPATKGLNLAGMLECLDKAP---EGSVILVHACAHNPTGVDPTHD 203 (409)
T ss_dssp SCCEEEEESSCCTHHHHHHHHTTC---EEEEECCEETTTTEECHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHH
T ss_pred CCCEEEEeCCCcHhHHHHHHHcCC---eEEEEEeecCcCCcCcHHHHHHHHHhCC---CCcEEEEECCCCCCCCCCCCHH
Confidence 567899999999999999999999 9999998533457999999999997521 12456777899999999976
Q ss_pred -hHHHHHHHHHhCCEEEeeccccchhccCc-----cchhcccCCcCCC-ceeeecccccCCC-CcceEE--EEeCchHHH
Q 041829 252 -LLALGNIAKSNGMWFHVDAAYAGSACICP-----EYRQYIDGVEEAD-SFNMNAHKWFLTN-FDCSAL--WVKDRNTLI 321 (486)
Q Consensus 252 -l~~I~~ia~~~g~~lhvD~A~g~~~~~~~-----~~~~~~~~~~~aD-s~~~~~hK~l~~p-~~~g~l--~~r~~~~~~ 321 (486)
+++|+++|++||+++++|.+|+++..... ..... .+. ..+ .++.++.|.++.| ..+|++ ++.++....
T Consensus 204 ~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~-~~~-~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~ 281 (409)
T 4eu1_A 204 DWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHL-VDM-VPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAK 281 (409)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHH-HTT-SSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHH
T ss_pred HHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHH-Hhh-CCcEEEEecCcccccCccCCceEEEEEeCCHHHHH
Confidence 55699999999999999999987553221 01111 111 223 4456788998754 457887 666654211
Q ss_pred HHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC--------hhhHHHHHHHHHHHHHHHHHHHhcC
Q 041829 322 QSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG--------LENLQGYIRNHIQLAKHFEGLVAQD 393 (486)
Q Consensus 322 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--------~~g~~~~~~~~~~~a~~l~~~l~~~ 393 (486)
.....-..+.... .. ....+..+++...+. .+.++++.++..++++++.+.|+++
T Consensus 282 ~l~~~~~~~~~~~--------------~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 344 (409)
T 4eu1_A 282 RLVSQLALLIRPM--------------YN---NPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKAC 344 (409)
T ss_dssp HHHHHHHHHHHHH--------------HS---SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhh--------------cC---CCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1110000000000 00 011233333333321 3446778888899999999999987
Q ss_pred CC---eEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHc-cCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHH
Q 041829 394 LR---FEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINS-TGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAW 469 (486)
Q Consensus 394 ~~---~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~ 469 (486)
+. +++. +|..+++.|. .. . .++..++.+ .| +++.+. .|++++ . .++++|++++
T Consensus 345 g~~~~~~~~-~~~~~~~~~~--~~-------~---~~~~~~ll~~~g-v~v~p~-------~Ri~~~-~-~~~~~i~~~~ 401 (409)
T 4eu1_A 345 GSVHDWSHI-ERQVGMMAYT--GL-------T---REQVELLRSEYH-IYMTLN-------GRAAVS-G-LNSTNVEYVS 401 (409)
T ss_dssp TCCSCCHHH-HHSCSSEEEC--CC-------C---HHHHHHHHHHHC-EECCTT-------CEEEGG-G-CCTTTHHHHH
T ss_pred CCCCCccee-cCCceEEEEe--CC-------C---HHHHHHHHHcCC-EEEcCC-------CEEEEE-e-cCHhhHHHHH
Confidence 21 5543 3444555442 11 1 123444543 46 555542 488883 3 3567799999
Q ss_pred HHHHHHH
Q 041829 470 EVMQDKA 476 (486)
Q Consensus 470 ~~l~~~~ 476 (486)
++|+++.
T Consensus 402 ~~l~~~l 408 (409)
T 4eu1_A 402 QAIHNVT 408 (409)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 209
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.78 E-value=1.7e-16 Score=162.07 Aligned_cols=329 Identities=14% Similarity=0.064 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEe-cCCCchhHHHHHH
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYA-SDQTHSALQKACQ 193 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~-s~~~H~s~~~a~~ 193 (486)
.+...++.++++++++.+.+ ..++++|||+||..|+.+++..... .+.. ++..|++ ....|.....+..
T Consensus 94 ~~~~~~la~~l~~~~~~~~~-------~v~~~~gGseA~~~al~~~~~~~~~-~g~~--~~~~vi~~~~~yhg~~~~~~~ 163 (460)
T 3gju_A 94 TEASITLAKMIIDRAPKGMS-------RVYFGLSGSDANETNIKLIWYYNNV-LGRP--EKKKIISRWRGYHGSGVMTGS 163 (460)
T ss_dssp CHHHHHHHHHHHHHSCTTEE-------EEEEESSHHHHHHHHHHHHHHHHHH-TTCT--TCCEEEEETTCCCCSSHHHHH
T ss_pred CHHHHHHHHHHHhhCCCCcC-------EEEEeCchHHHHHHHHHHHHHHHHh-cCCC--CCCEEEEECCCcCCCCHHHhh
Confidence 45666677779998865543 5899999999999999988864211 1111 3344544 4444655444444
Q ss_pred HhCC---------CCCCeEEEeCCCC---CCCccC--------HHHHHHHHHHHHhCCCccEEEEEecCCccccccCC--
Q 041829 194 IGGI---------HPQNFRVLKTDSS---TNYSLS--------PDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP-- 251 (486)
Q Consensus 194 ~~g~---------g~~~v~~v~~~~~---~~~~id--------~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~-- 251 (486)
..|. ....+..+|.... ++..++ +++|+++|++.. ...+.+|+++..++++|.+-+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~--~~~~aaii~ep~~~~~G~~~~~~ 241 (460)
T 3gju_A 164 LTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEG--PETIAAFIGEPILGTGGIVPPPA 241 (460)
T ss_dssp HCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCT
T ss_pred ccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCCccCCH
Confidence 3221 1124666764320 111233 688998887521 123567787777778888765
Q ss_pred --hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCC-
Q 041829 252 --LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTN- 327 (486)
Q Consensus 252 --l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~- 327 (486)
+++|.++|++||+++++|++|.++......+.....++ ..|.++++ |.++.. ...|+++.+++ +.+.+...
T Consensus 242 ~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~s--K~l~gG~~~lg~v~~~~~--i~~~~~~~~ 316 (460)
T 3gju_A 242 GYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGI-KPDLITIA--KGLTSAYAPLSGVIVADR--VWQVLVQGS 316 (460)
T ss_dssp THHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTC-CCSEEEEC--GGGTTTSSCCEEEEEEHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCC-CCCeeeee--hhhcCCCCCeEEEEECHH--HHHHHhccc
Confidence 99999999999999999999987532211111111122 35777765 998775 46788877653 22222110
Q ss_pred --cccccccccccCCccCCCCCccCCCCCCCcHHHH---HHHHHhChhh-HHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Q 041829 328 --PEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLW---MVLRLYGLEN-LQGYIRNHIQLAKHFEGLVAQDLRFEVVTP 401 (486)
Q Consensus 328 --~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~---~~l~~~g~~g-~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 401 (486)
...+.. ..+-....+... ++++.+..+. +++..+....+.+.|.+.++++|.+..+ .
T Consensus 317 ~~~~~~~~----------------~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~ 379 (460)
T 3gju_A 317 DKLGSLGH----------------GWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEV-R 379 (460)
T ss_dssp HHHCSCSC----------------CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEE-E
T ss_pred cccccccc----------------CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-e
Confidence 000000 011112233333 3444332232 2333333333444555555666666544 3
Q ss_pred CCceEEEEEecCCCCCc---ccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 402 RIFSLVCFRLLPPHNDE---DHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 402 ~~~~~v~f~~~~~~~~~---~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
+...++.+.+....... ........++.+.+.++|. .+.+.. +..++|+++ ....|++++++++++|+++.++
T Consensus 380 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv-~v~~~~--~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~ 455 (460)
T 3gju_A 380 GDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGV-IGRAMP--QGDILGFAP-PLCLTREQADIVVSKTADAVKS 455 (460)
T ss_dssp EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTE-ECEECS--SSCEEEECC-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCe-EEecCC--CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHH
Confidence 34456666664321100 0012234577888888884 444432 336899997 6678999999999999999887
Q ss_pred HHH
Q 041829 479 LLA 481 (486)
Q Consensus 479 l~~ 481 (486)
+.+
T Consensus 456 ~~~ 458 (460)
T 3gju_A 456 VFA 458 (460)
T ss_dssp HHC
T ss_pred HHh
Confidence 653
No 210
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.78 E-value=4.6e-16 Score=158.31 Aligned_cols=325 Identities=12% Similarity=0.078 Sum_probs=179.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCC-chhHHHHH
Q 041829 114 ATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQT-HSALQKAC 192 (486)
Q Consensus 114 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~-H~s~~~a~ 192 (486)
..+...++.++++++++.+.+ ..++++|||+|+..|+.+++...... +. ..++.|++.+.+ |.+...+.
T Consensus 85 ~~~~~~~la~~l~~~~~~~~~-------~v~~~~sGseA~~~al~~~~~~~~~~-G~--~~~~~vi~~~~~yhg~~~~~~ 154 (448)
T 3dod_A 85 TNVPATQLAETLIDISPKKLT-------RVFYSDSGAEAMEIALKMAFQYWKNI-GK--PEKQKFIAMKNGYHGDTIGAV 154 (448)
T ss_dssp EEHHHHHHHHHHHHHSCTTEE-------EEEEESSHHHHHHHHHHHHHHHHHHT-TC--TTCCEEEEEC-----------
T ss_pred CCHHHHHHHHHHHHhCCCCCC-------EEEEeCchHHHHHHHHHHHHHHHHhh-CC--CCCCEEEEECCCCCCccHHHH
Confidence 345666777889999865433 48999999999999999988742211 00 014556655555 44333333
Q ss_pred HHhCCC---------CCCeEEEeCCCCCCCcc-----------CHHHHHHHHHHHHhCCCccEEEEEecCC-ccccccCC
Q 041829 193 QIGGIH---------PQNFRVLKTDSSTNYSL-----------SPDSLAEAISRDLTIGLIPFFLCATVGT-TSSTAVDP 251 (486)
Q Consensus 193 ~~~g~g---------~~~v~~v~~~~~~~~~i-----------d~~~L~~~i~~~~~~g~~p~~vv~~~~~-t~tG~id~ 251 (486)
...|.. ...+..+|.+. .|+. |+++|+++|+... ..+.+|++.... +++|.+-+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~a~vi~ep~~~~~~G~~~~ 229 (448)
T 3dod_A 155 SVGSIELFHHVYGPLMFESYKAPIPY--VYRSESGDPDECRDQCLRELAQLLEEHH---EEIAALSIESMVQGASGMIVM 229 (448)
T ss_dssp ------------------CEEECCCC--CTTSSSCCHHHHHHHHHHHHHHHHHHHG---GGEEEEEEESSEESTTTCEEC
T ss_pred HhcCCccccccccCCCCCceEeCCCc--cccCCccchhhhhHHHHHHHHHHHHhCC---CCEEEEEEeCcccCCCCeecC
Confidence 222211 01345555542 2333 5899999997321 124566666666 78887765
Q ss_pred ----hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCC-cceEEEEeCchHHHHHhcC
Q 041829 252 ----LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNF-DCSALWVKDRNTLIQSLST 326 (486)
Q Consensus 252 ----l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~-~~g~l~~r~~~~~~~~~~~ 326 (486)
+++|.++|++||+++++|++|.++......+.....++ ..|.++++ |.++..+ ..|+++.+++ +.+.+..
T Consensus 230 ~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~-~~di~t~s--K~l~~G~~~ig~v~~~~~--~~~~~~~ 304 (448)
T 3dod_A 230 PEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENV-QPDLMAAG--KGITGGYLPIAVTFATED--IYKAFYD 304 (448)
T ss_dssp CTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTTSSCCEEEEEEHH--HHHTTCS
T ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCC-CCCEEEec--ccccCCcCceEEEEECHH--HHHHhhh
Confidence 99999999999999999999986532211111111122 35777665 9987763 7888887643 3333322
Q ss_pred CcccccccccccCCccCCCCCccCCCCCCCcHHHHH---HHHHhChhhHHHHHHHHHHHHHHHHHHHh---cCCCeEEec
Q 041829 327 NPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWM---VLRLYGLENLQGYIRNHIQLAKHFEGLVA---QDLRFEVVT 400 (486)
Q Consensus 327 ~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~l~---~~~~~~~~~ 400 (486)
. +-... .+....+-....+...+ +++.+.. ++++++..++.+++++.|+ .+|.+..+
T Consensus 305 ~--~~~~~-----------~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~- 367 (448)
T 3dod_A 305 D--YENLK-----------TFFHGHSYTGNQLGCAVALENLALFES---ENIVEQVAEKSKKLHFLLQDLHALPHVGDI- 367 (448)
T ss_dssp C--GGGCC-----------CCCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHTTSTTEEEE-
T ss_pred c--cccCC-----------cccccCCCCcCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHhcCCCeEEE-
Confidence 0 00000 00000111123333333 3433222 2344555555666665554 44444332
Q ss_pred CCCceEEEEEecCCCCCcc---cchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041829 401 PRIFSLVCFRLLPPHNDED---HGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 401 ~~~~~~v~f~~~~~~~~~~---~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 477 (486)
.+...++.+.+........ .......++.+.+.++| +.+.+. + .++|+++ +...|+++|++++++|+++.+
T Consensus 368 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~~~~~---~-~~iRi~~-~~~~t~e~i~~~l~~l~~~l~ 441 (448)
T 3dod_A 368 RQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELG-MLTRPL---G-DVIAFLP-PLASTAEELSEMVAIMKQAIH 441 (448)
T ss_dssp EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTT-EECCEE---T-TEEEECC-CTTCCHHHHHHHHHHHHHHHH
T ss_pred EeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCC-cEEecc---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHH
Confidence 2334466666643211000 00111356778888888 444443 2 5899988 778899999999999999988
Q ss_pred HHHH
Q 041829 478 ALLA 481 (486)
Q Consensus 478 ~l~~ 481 (486)
++..
T Consensus 442 ~~~~ 445 (448)
T 3dod_A 442 EVTS 445 (448)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 7754
No 211
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.77 E-value=4e-16 Score=159.75 Aligned_cols=330 Identities=12% Similarity=0.068 Sum_probs=194.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHH
Q 041829 114 ATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQ 193 (486)
Q Consensus 114 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 193 (486)
..+...++.+|++++++.+.+ ..+|++|||+||..|+.+++...... +..+ +..+|......|.....+..
T Consensus 95 ~~~~~~~la~~l~~~~~~~~~-------~v~~~~sGseA~~~Aik~a~~~~~~~-g~~~-~~~vi~~~~~yHg~~~~~~~ 165 (476)
T 3i5t_A 95 ATSPAARLAEKIATLTPGDLN-------RIFFTTGGSTAVDSALRFSEFYNNVL-GRPQ-KKRIIVRYDGYHGSTALTAA 165 (476)
T ss_dssp BCHHHHHHHHHHHTTSSTTCC-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCTT-CCEEEEETTCCCCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcC-------EEEEeCchHHHHHHHHHHHHHHHHhc-CCCC-CCEEEEEcCCcCcCChhhcc
Confidence 456777788889999965443 48999999999999999988753221 1110 22344445555655544444
Q ss_pred HhCCC---------CCCeEEEeCCCC-CCCccC--------HHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----
Q 041829 194 IGGIH---------PQNFRVLKTDSS-TNYSLS--------PDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP---- 251 (486)
Q Consensus 194 ~~g~g---------~~~v~~v~~~~~-~~~~id--------~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~---- 251 (486)
..|.. ...+..++.... ..+..| +++|++++++.. ...+.+|++....+++|.+-+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~ 243 (476)
T 3i5t_A 166 CTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGY 243 (476)
T ss_dssp TCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTH
T ss_pred ccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHH
Confidence 33321 123455553321 001223 789999887521 123567888888888887655
Q ss_pred hHHHHHHHHHhCCEEEeeccccchhccCccchhc-ccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCCcc
Q 041829 252 LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQY-IDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTNPE 329 (486)
Q Consensus 252 l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~-~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~~~ 329 (486)
+++|.++|++||+++++|++|.++......+... ..++ ..|.++++ |.+++. ...|+++.++ + +.+.+.....
T Consensus 244 L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v-~pdi~t~s--K~l~~G~~plg~v~~~~-~-i~~~~~~~~~ 318 (476)
T 3i5t_A 244 HARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGV-VPDIITFA--KGVTSGYVPLGGLAISE-A-VLARISGENA 318 (476)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCC-CCSEEEEC--GGGGTTSSCCEEEEECH-H-HHHTTSGGGC
T ss_pred HHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCC-Ccchhhhh--hhhcCCCcCeEEEEECH-H-HHHHHhcCCc
Confidence 9999999999999999999998753322111111 1122 36777765 988876 5678887754 3 3333321100
Q ss_pred cccccccccCCccCCCCCccCCCCCCCcHHHHH---HHHHhChhhHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCCC
Q 041829 330 FLKNKASQANMVVDYKDWQIPLGRRFRSLKLWM---VLRLYGLENLQGYIRNHIQLAKHFEGLVAQD---LRFEVVTPRI 403 (486)
Q Consensus 330 yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~---~~~~~~~~~~ 403 (486)
.. ..+....+-....+...+ +++.+.. ++++++..++.+++++.|+++ |.+..+ .+.
T Consensus 319 ~~-------------~~~~~~~t~~~np~a~aAa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-~~~ 381 (476)
T 3i5t_A 319 KG-------------SWFTNGYTYSNQPVACAAALANIELMER---EGIVDQAREMADYFAAALASLRDLPGVAET-RSV 381 (476)
T ss_dssp TT-------------CEECCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEE-EEE
T ss_pred cc-------------ccccccCCCCcCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-Eec
Confidence 00 000000111123333333 3443322 345667777888888888764 334433 334
Q ss_pred ceEEEEEecCCCCCccc---chHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 041829 404 FSLVCFRLLPPHNDEDH---GNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 404 ~~~v~f~~~~~~~~~~~---~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
..++.+.+......... ......++.+.+.++| +++.+. | .++|++. ....|++++++++++|+++++++.
T Consensus 382 G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~---g-~~iRi~p-~l~~t~e~i~~~l~~l~~~l~~~~ 455 (476)
T 3i5t_A 382 GLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELG-LIVRPL---G-DLCVISP-PLIISRAQIDEMVAIMRQAITEVS 455 (476)
T ss_dssp TTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTT-EECEEE---T-TEEEECC-CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEecCccccccccchhHHHHHHHHHHHHCC-CEEEec---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44666666432110000 1113567788888888 444442 3 6899997 667899999999999999998876
Q ss_pred Hh
Q 041829 481 AR 482 (486)
Q Consensus 481 ~~ 482 (486)
++
T Consensus 456 ~~ 457 (476)
T 3i5t_A 456 AA 457 (476)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 212
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.77 E-value=2.2e-16 Score=161.48 Aligned_cols=322 Identities=11% Similarity=0.054 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHH
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQI 194 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 194 (486)
.+...++.+.++++++.+.+ ..+|++|||+||..|+.+++...... +..+ ++.+|......|.....+...
T Consensus 98 ~~~~~~lae~l~~~~~~~~~-------~v~~~~sGseA~~~aik~a~~~~~~~-g~~~-~~~ii~~~~~yHg~t~~~~~~ 168 (472)
T 3hmu_A 98 HVPAIALAQKLAELAPGDLN-------HVFFAGGGSEANDTNIRMVRTYWQNK-GQPE-KTVIISRKNAYHGSTVASSAL 168 (472)
T ss_dssp CHHHHHHHHHHHHHSCTTEE-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCTT-CCEEEEETTCCCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCC-------EEEEeCCHHHHHHHHHHHHHHHHHhc-CCCC-CCEEEEEcCcCCCccHHhhhc
Confidence 34555566668898875443 48999999999999999998743211 1110 233444455556544433333
Q ss_pred hCC--------CCCCeEEEeCCC--C-CCCccC--------HHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----
Q 041829 195 GGI--------HPQNFRVLKTDS--S-TNYSLS--------PDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP---- 251 (486)
Q Consensus 195 ~g~--------g~~~v~~v~~~~--~-~~~~id--------~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~---- 251 (486)
.|. ....+..+|... . +++ +| +++|+++|++.. ...+.+|++....+++|.+-|
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~epv~~~gG~~~~~~~~ 245 (472)
T 3hmu_A 169 GGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELG--ENRVAAFIAEPVQGAGGVIVAPDSY 245 (472)
T ss_dssp SCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTCBCCCTTH
T ss_pred cCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCcccCCHHH
Confidence 221 112456666432 0 112 34 788998887431 123567777777888888877
Q ss_pred hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCCccc
Q 041829 252 LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTNPEF 330 (486)
Q Consensus 252 l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~~~y 330 (486)
+++|.++|++||+++++|++|.++......+.....++ ..|.++++ |.++.. ...|+++.+++ +.+.+.. ..+
T Consensus 246 l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v-~pdi~t~s--K~l~gg~~plG~v~~~~~--i~~~~~~-~~~ 319 (472)
T 3hmu_A 246 WPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGI-RPHIMTIA--KGLSSGYAPIGGSIVCDE--VAHVIGK-DEF 319 (472)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTC-CCSEEEEC--GGGTTTSSCCEEEEEEHH--HHHHHTT-SCB
T ss_pred HHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCC-CCceeeec--hhhhcCCcceEEEEECHH--HHHhccc-CCc
Confidence 99999999999999999999987533221111111122 46887765 988765 46788887543 3333311 111
Q ss_pred ccccccccCCccCCCCCccCCCCCCCcHHHH---HHHHHhChhhHHHHHHHHH-HHHHHHHHHHhcC---CCeEEecCCC
Q 041829 331 LKNKASQANMVVDYKDWQIPLGRRFRSLKLW---MVLRLYGLENLQGYIRNHI-QLAKHFEGLVAQD---LRFEVVTPRI 403 (486)
Q Consensus 331 l~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~---~~l~~~g~~g~~~~~~~~~-~~a~~l~~~l~~~---~~~~~~~~~~ 403 (486)
. . ..+-....+... ++++.+.. ++++++.. ++.+++++.|+++ |.+..+ .+.
T Consensus 320 ~-~----------------~~t~~~np~a~aAa~aaL~~~~~---~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~ 378 (472)
T 3hmu_A 320 N-H----------------GYTYSGHPVAAAVALENLRILEE---ENILDHVRNVAAPYLKEKWEALTDHPLVGEA-KIV 378 (472)
T ss_dssp C-C----------------CCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEE-EEE
T ss_pred c-c----------------cCCCCCCHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-Eec
Confidence 0 0 011112233333 34443322 24555666 6777777777654 445443 334
Q ss_pred ceEEEEEecCCCCCccc---c-hHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 404 FSLVCFRLLPPHNDEDH---G-NKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 404 ~~~v~f~~~~~~~~~~~---~-~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
..++.+.+......... . .....++.+.|.++|.++ .+. + .++|++. ....|++|+++++++|+++.+++
T Consensus 379 G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v-~~~---g-~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 379 GMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIM-RHV---G-DRMIISP-PLVITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp TTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCC-EEE---T-TEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEE-Eec---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 45666766432100000 0 234567888888888543 332 2 6899997 67889999999999999988766
Q ss_pred HH
Q 041829 480 LA 481 (486)
Q Consensus 480 ~~ 481 (486)
.+
T Consensus 453 ~~ 454 (472)
T 3hmu_A 453 QA 454 (472)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 213
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.77 E-value=3e-17 Score=164.60 Aligned_cols=251 Identities=11% Similarity=0.083 Sum_probs=169.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEE---cCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecC-CCchhH
Q 041829 113 AATELEMIVLDWLAKLLKLPEDFLSSGQGGGVI---QGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASD-QTHSAL 188 (486)
Q Consensus 113 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~---t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~-~~H~s~ 188 (486)
+..++|+. +++++|.+. .++ ++|||+||..++.+... +++.|++++ ..|...
T Consensus 75 g~~~Le~~----lA~l~g~e~---------alv~p~~~sGt~A~~~al~all~-----------pGD~Vl~~~~~~y~~~ 130 (427)
T 3hvy_A 75 GRDSLDRV----YANIFNTES---------AFVRPHFVNGTHAIGAALFGNLR-----------PNDTMMSICGMPYDTL 130 (427)
T ss_dssp HHHHHHHH----HHHHHTCSE---------EEEETTCCSHHHHHHHHHHHTCC-----------TTCEEEECSSSCCGGG
T ss_pred hHHHHHHH----HHHHhCCCc---------eEEeCCCCcHHHHHHHHHHHhcC-----------CCCEEEEeCCCCchhH
Confidence 45666665 899999865 466 78999999887765433 778888887 777655
Q ss_pred H-----------HHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEec----CCccccccCChH
Q 041829 189 Q-----------KACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATV----GTTSSTAVDPLL 253 (486)
Q Consensus 189 ~-----------~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~----~~t~tG~id~l~ 253 (486)
. ..++..|+ +++.+|. + ++.+|+++|++++++. .++.+|+++. +++++|.+.|++
T Consensus 131 ~~~~g~~~~~~~~~l~~~G~---~~~~v~~-~--~~~~d~e~l~~~i~~~----~~tklV~i~~s~gyp~nptg~v~dl~ 200 (427)
T 3hvy_A 131 HDIIGMDDSKKVGSLREYGV---KYKMVDL-K--DGKVDINTVKEELKKD----DSIKLIHIQRSTGYGWRKSLRIAEIA 200 (427)
T ss_dssp HHHHTCCTTCCSCCTGGGTC---EEEECCC-B--TTBCCHHHHHHHHHHC----TTEEEEEEESSCCSSSSCCCCHHHHH
T ss_pred HHHhccccchhhhHHHHcCC---EEEEecC-C--CCCcCHHHHHHHhhCC----CCCEEEEEECCCCCCCCccccHHHHH
Confidence 5 33455688 8888887 3 3699999999999741 1256888888 999999999999
Q ss_pred HHHHHHHH--hCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCC--cceEEEEeCchHHHHHhcC-Cc
Q 041829 254 ALGNIAKS--NGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNF--DCSALWVKDRNTLIQSLST-NP 328 (486)
Q Consensus 254 ~I~~ia~~--~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~--~~g~l~~r~~~~~~~~~~~-~~ 328 (486)
+|+++|++ +|++++||+||+.+....... . .++|.++.++||+++++. ..|+++.+ ++.+.+.... ..
T Consensus 201 ~i~~ia~~~~~g~~livD~a~~~~~~~~~p~-~-----~gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~li~~l~~~~~~ 273 (427)
T 3hvy_A 201 EIIKSIREVNENVIVFVDNCYGEFVEEKEPT-D-----VGADIIAGSLIKNIGGGIATTGGYIAGK-EEYVTQATFRVTV 273 (427)
T ss_dssp HHHHHHHHHCSSSEEEEECTTCTTTSSSCGG-G-----GTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCCCEEEEECCccccccCCCCc-c-----cCCeEEEECCcccccccccceEEEEEEC-HHHHHHHHHHhhc
Confidence 99999999 899999999998765221111 1 168999999999998732 23666654 4433322110 11
Q ss_pred ccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCce---
Q 041829 329 EFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFS--- 405 (486)
Q Consensus 329 ~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~--- 405 (486)
..+. ...+-.+. ..|.+++ |......++++..+++.++++.|+++ ++++... ...
T Consensus 274 ~~~g----------------~~~~~~~~--~a~~~~~--gl~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~-~~~~~~ 331 (427)
T 3hvy_A 274 PGIG----------------GECGSTFG--VMRSLYE--GLFMAPHVTIEAVKGAVFCARIMELA-GFDVLPK-YNDKRT 331 (427)
T ss_dssp TTTG----------------GGCCCCTT--CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCS
T ss_pred CCcc----------------cccCCCHH--HHHHHHH--hHhHHHHHHHHHHHHHHHHHHHHHhC-CCeecCC-CCCCCc
Confidence 1110 01111111 1344443 33445678889999999999999998 6787532 333
Q ss_pred --EEEEEecCCCCCcccchHHHHHHHHHHHc
Q 041829 406 --LVCFRLLPPHNDEDHGNKLNHKLLDDINS 434 (486)
Q Consensus 406 --~v~f~~~~~~~~~~~~~~~~~~l~~~l~~ 434 (486)
+++|.+.. .+...++++.|..
T Consensus 332 ~li~~~~l~~--------~~~~~~f~~~l~~ 354 (427)
T 3hvy_A 332 DIIQAIKFND--------EKKLIDFIKGIQT 354 (427)
T ss_dssp SSEEEEECSS--------HHHHHHHHHHHHH
T ss_pred eEEEEEeCCC--------HHHHHHHHHHhcc
Confidence 77777742 3444567777664
No 214
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.77 E-value=2.9e-16 Score=159.88 Aligned_cols=320 Identities=13% Similarity=0.067 Sum_probs=178.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEe-cCCCchhHHHH
Q 041829 113 AATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYA-SDQTHSALQKA 191 (486)
Q Consensus 113 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~-s~~~H~s~~~a 191 (486)
...+...++.++++++++.+.. ...+||+|||+||..|+..++... ++..|++ ....|-....+
T Consensus 104 ~~~~~~~~la~~l~~~~~~~~~------~~v~~~~sGseA~~~alk~a~~~~---------g~~~ii~~~~~yhg~~~~~ 168 (453)
T 4ffc_A 104 TPYEQYVQVAELLNALTPGDHD------KRTALFNSGAEAVENAIKVARLAT---------GRPAVVAFDNAYHGRTNLT 168 (453)
T ss_dssp SCCHHHHHHHHHHHHHSSCSSC------EEEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEETTCCCCSSHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCC------cEEEEeCcHHHHHHHHHHHHHHhc---------CCCEEEEEcCccCCcchHH
Confidence 3456666777889999974321 148999999999999998887532 3444444 44446554444
Q ss_pred HHHhCCC----------CCCeEEEeCCCC--CCCccC-HHHHHHH---HHHHHhCCCccEEEEEecCCccccccCC----
Q 041829 192 CQIGGIH----------PQNFRVLKTDSS--TNYSLS-PDSLAEA---ISRDLTIGLIPFFLCATVGTTSSTAVDP---- 251 (486)
Q Consensus 192 ~~~~g~g----------~~~v~~v~~~~~--~~~~id-~~~L~~~---i~~~~~~g~~p~~vv~~~~~t~tG~id~---- 251 (486)
....+.. ...+..+|.... +.+.++ .+.++.. +++.. ....+.+|++...+++.|.+-|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i-~~~~~aavi~ep~~~~gG~~~~~~~~ 247 (453)
T 4ffc_A 169 MALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQI-GAQSLAAIIIEPIQGEGGFIVPAPGF 247 (453)
T ss_dssp HHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHT-CGGGEEEEEECSSBTTTTSBCCCTTH
T ss_pred HhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhc-CCCCEEEEEEcCCCCCCCcccCCHHH
Confidence 4432221 114666776421 111233 2333322 22211 1123455666555555667755
Q ss_pred hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccc
Q 041829 252 LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFL 331 (486)
Q Consensus 252 l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl 331 (486)
+++|.++|++||+++++|++|.++......+.....++ ..|.++++ |.++.....|+++.++ + +.+.+.. ..
T Consensus 248 l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~-~pdi~t~s--K~~~~G~~~G~~~~~~-~-i~~~~~~---~~ 319 (453)
T 4ffc_A 248 LATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGI-VPDIVTMA--KGIAGGMPLSAVTGRA-E-LMDAVYA---GG 319 (453)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEEC--GGGGTTSSCEEEEEEH-H-HHTTSCT---TS
T ss_pred HHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCC-CcchHhhh--hhhcCCcCeEEEEECH-H-HHhhhcc---cC
Confidence 99999999999999999999986532211111111122 35776665 9987767788887754 2 2222110 00
Q ss_pred cccccccCCccCCCCCccCCCCCCCcHHHHH---HHHHhChhhHHHHHHHHHHHHHHHHHHH----hcCCCeEEecCCCc
Q 041829 332 KNKASQANMVVDYKDWQIPLGRRFRSLKLWM---VLRLYGLENLQGYIRNHIQLAKHFEGLV----AQDLRFEVVTPRIF 404 (486)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~l----~~~~~~~~~~~~~~ 404 (486)
...+-....+...+ +++.+..+ ++.++..++.+++++.| +++|.+..+ .+..
T Consensus 320 -----------------~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g 378 (453)
T 4ffc_A 320 -----------------LGGTYGGNPVTCAAAVAALGVMREL---DLPARARAIEASVTSRLSALAEEVDIIGEV-RGRG 378 (453)
T ss_dssp -----------------SCCSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCSSEEEE-EEET
T ss_pred -----------------cCCCCCcCHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-Eeec
Confidence 00111122333333 34333222 33444455555555554 455655543 2334
Q ss_pred eEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041829 405 SLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALLA 481 (486)
Q Consensus 405 ~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~~ 481 (486)
.++.+.+..... .........++.+.+.++| +.+.+.... ..++|+++ +...|++++++++++|+++++++..
T Consensus 379 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~G-v~v~~~~~~-~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (453)
T 4ffc_A 379 AMLAIEIVKPGT-LEPDAALTKSIAAEALSQG-VLILTCGTF-GNVIRLLP-PLVIGDDLLDEGITALSDIIRAKAS 451 (453)
T ss_dssp TEEEEEEBCTTS-CCBCHHHHHHHHHHHHHTT-EECCEECTT-SCEEEECC-CTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEecCcc-cCCCHHHHHHHHHHHHhCC-CEEecCCCC-CCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 466666642110 0012344567888888888 444443222 24899998 7788999999999999999887653
No 215
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.77 E-value=3e-16 Score=159.71 Aligned_cols=336 Identities=14% Similarity=0.080 Sum_probs=187.6
Q ss_pred HHHHHHHHhcCcCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCcc
Q 041829 92 FLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKN 171 (486)
Q Consensus 92 ~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 171 (486)
.+.+.+...+.... .+.......+...++.++++++++.+.. ...+||+|||+||..|+..++...
T Consensus 81 ~v~~A~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~~~~------~~v~~~~sGseA~~~Alk~a~~~~------- 146 (451)
T 3oks_A 81 KVVEAVRSQVGDFT-HTCFMVTPYEGYVAVCEQLNRLTPVRGD------KRSALFNSGSEAVENAVKIARSHT------- 146 (451)
T ss_dssp HHHHHHHHHHTTCS-CCTTTTSCCHHHHHHHHHHHHHSSCCSS------EEEEEESSHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhcc-cccCCccCCHHHHHHHHHHHHhCCcCCC------CEEEEeCcHHHHHHHHHHHHHHhc-------
Confidence 34444544444332 2222223355666777889999874321 148999999999999999888642
Q ss_pred CCCCeEEEe-cCCCchhHHHHHHHhCCC----------CCCeEEEeCCCC--------CC---CccCHHHHHHHHHHHHh
Q 041829 172 SLEKLVVYA-SDQTHSALQKACQIGGIH----------PQNFRVLKTDSS--------TN---YSLSPDSLAEAISRDLT 229 (486)
Q Consensus 172 ~~~~~~v~~-s~~~H~s~~~a~~~~g~g----------~~~v~~v~~~~~--------~~---~~id~~~L~~~i~~~~~ 229 (486)
++..|++ ....|-....+....|-. ...+..+|.... +. ..-+++.++++|++..
T Consensus 147 --g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~- 223 (451)
T 3oks_A 147 --HKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQI- 223 (451)
T ss_dssp --CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHT-
T ss_pred --CCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhc-
Confidence 4444544 444454444433332210 114667776410 00 0123555556665422
Q ss_pred CCCccEEEEEecCCccccccCC----hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCC
Q 041829 230 IGLIPFFLCATVGTTSSTAVDP----LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLT 305 (486)
Q Consensus 230 ~g~~p~~vv~~~~~t~tG~id~----l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~ 305 (486)
....+.+|++....++.|.+.| +++|.++|++||+++++|++|.++......+.....++ ..|.++++ |.++.
T Consensus 224 ~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~-~pdi~t~s--K~l~~ 300 (451)
T 3oks_A 224 GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGI-DPDLIVTA--KGIAG 300 (451)
T ss_dssp CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGT
T ss_pred CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCC-CCCeeeeh--hhhhC
Confidence 1223556666666666677766 99999999999999999999986532211111111122 35777654 99987
Q ss_pred CCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHH---HHHhChhhHHHHHHHHHHH
Q 041829 306 NFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMV---LRLYGLENLQGYIRNHIQL 382 (486)
Q Consensus 306 p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~---l~~~g~~g~~~~~~~~~~~ 382 (486)
....|+++.++ + +.+.+... . ...+-....+...++ ++.+..+ +++++..++
T Consensus 301 G~~iG~v~~~~-~-~~~~~~~~---~-----------------~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~ 355 (451)
T 3oks_A 301 GLPLSAVTGRA-E-IMDSPHVS---G-----------------LGGTYGGNPIACAAALATIETIESE---GLVARAQQI 355 (451)
T ss_dssp TSSCEEEEEEH-H-HHTCSCTT---S-----------------BCCSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHH
T ss_pred CcceEEEEECH-H-HHhhhcCC---C-----------------cCCCCCCCHHHHHHHHHHHHHHhhh---hHHHHHHHH
Confidence 77788887754 2 22221100 0 001111233444333 3332222 344555555
Q ss_pred HHHHHHHHh----cCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCC
Q 041829 383 AKHFEGLVA----QDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAP 458 (486)
Q Consensus 383 a~~l~~~l~----~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~ 458 (486)
.+++++.|+ ++|.+..+ .+...++.+.+..... .........++.+.+.++|.+ +.+.... ..++|+++ +.
T Consensus 356 ~~~l~~~L~~~~~~~~~~~~~-~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Gv~-v~~~~~~-~~~iRi~~-~~ 430 (451)
T 3oks_A 356 EKIMKDRLGRLQAEDDRIGDV-RGRGAMIAMELVKAGT-TEPDADLTKALCAGAHAAGVI-VLSCGTY-GNVVRFLP-PL 430 (451)
T ss_dssp HHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEBSTTS-CCBCHHHHHHHHHHHHHTTEE-CEEECTT-SCEEEECC-CT
T ss_pred HHHHHHHHHHHHhhCCCeEEE-EEeeEEEEEEEecCcc-CCCCHHHHHHHHHHHHhCCcE-EecCCCC-CCEEEEEC-CC
Confidence 555555554 45655443 2334466666642110 001234456788888888844 4433222 24899998 77
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 041829 459 LTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 459 ~~t~~di~~~~~~l~~~~~ 477 (486)
..|++++++++++|+++++
T Consensus 431 ~~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 431 SIGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 8899999999999998765
No 216
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.76 E-value=1.8e-16 Score=161.37 Aligned_cols=316 Identities=10% Similarity=-0.009 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHcC-CCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHH---hCccCCCCeEEEecCCC-chhHHH
Q 041829 116 ELEMIVLDWLAKLLK-LPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKR---VGKNSLEKLVVYASDQT-HSALQK 190 (486)
Q Consensus 116 ~le~~~~~~la~l~g-~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~---~~~~~~~~~~v~~s~~~-H~s~~~ 190 (486)
+...++.+.++++++ .+.+ ..+|++|||+||..|+.+++...... .+..+.+++.|++...+ |.....
T Consensus 101 ~~~~~la~~la~~~~~~~~~-------~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~ 173 (449)
T 2cjg_A 101 VAMARFVETFARVLGDPALP-------HLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGY 173 (449)
T ss_dssp HHHHHHHHHHHHHHCCTTCC-------EEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTT
T ss_pred HHHHHHHHHHHHhcCCCCCC-------EEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccc
Confidence 344455556888876 2222 58999999999999998876432100 00001125556666554 533222
Q ss_pred HHHH--------hCCCC--CCeEEEeCCC--CCC------CccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC-
Q 041829 191 ACQI--------GGIHP--QNFRVLKTDS--STN------YSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP- 251 (486)
Q Consensus 191 a~~~--------~g~g~--~~v~~v~~~~--~~~------~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~- 251 (486)
+... .+.+. ..++.+|.+. ... ...++++|+++|++. +..+.+|+++..++++|.+-+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~~vi~ep~~~~~G~~~~~ 250 (449)
T 2cjg_A 174 TLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR---PHDIACFVAEPIQGEGGDRHFR 250 (449)
T ss_dssp GGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS---TTTEEEEEECSEETTTTCEECC
T ss_pred hhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc---CCceEEEEEeCcCCCCCCccCC
Confidence 2111 12211 2566677653 110 025677798888642 123567777766788998766
Q ss_pred ---hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCc
Q 041829 252 ---LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNP 328 (486)
Q Consensus 252 ---l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~ 328 (486)
+++|.++|++||+++|+|++|.++......+.....++ ..|.++++ |++ | +|+++.++ +.. +.+. +
T Consensus 251 ~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~-~~di~t~s--K~l--~--iG~~~~~~-~~~-~~l~--~ 319 (449)
T 2cjg_A 251 PEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDV-APDIVAFG--KKT--Q--VCGVMAGR-RVD-EVAD--N 319 (449)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEEC--GGG--S--SEEEEECG-GGG-GSTT--C
T ss_pred HHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCC-CceEEEec--Ccc--c--EEEEEECH-HHh-hhhh--h
Confidence 99999999999999999999986432211111111122 45777654 988 4 78888765 221 1100 0
Q ss_pred ccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhc----CCC-eEEecCCC
Q 041829 329 EFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQ----DLR-FEVVTPRI 403 (486)
Q Consensus 329 ~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~----~~~-~~~~~~~~ 403 (486)
.++.... ...+. .+..+...++.++++.+.. +++.++..++++++++.|++ .|. +..+ ++.
T Consensus 320 ~~~~~~~---------~~~t~-~~n~~~~~aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~~~ 385 (449)
T 2cjg_A 320 VFAVPSR---------LNSTW-GGNLTDMVRARRILEVIEA---EGLFERAVQHGKYLRARLDELAADFPAVVLDP-RGR 385 (449)
T ss_dssp TTTSTTS---------SCCSS-SSCHHHHHHHHHHHHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEE-EEE
T ss_pred cccCCcc---------cccCC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeE-eec
Confidence 0110000 00000 1111122233344443322 34567777888888888875 455 5443 344
Q ss_pred ceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 404 FSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 404 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
.+++.+.+.. .....++.+.|.++| +.+.+. +..++|+++ +..+|++||++++++|+++.+++
T Consensus 386 g~~~~~~~~~--------~~~~~~~~~~l~~~G-v~v~~~---g~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 386 GLMCAFSLPT--------TADRDELIRQLWQRA-VIVLPA---GADTVRFRP-PLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp TTEEEEECSS--------HHHHHHHHHHHHHTT-EECEEE---TTTEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEECC--------hHHHHHHHHHHHHCC-eEEecC---CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 5566666642 123456888888877 444443 346899998 77889999999999999987654
No 217
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.76 E-value=1.2e-16 Score=161.96 Aligned_cols=304 Identities=13% Similarity=0.062 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCC-chhHHHHHHHh
Q 041829 117 LEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQT-HSALQKACQIG 195 (486)
Q Consensus 117 le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~-H~s~~~a~~~~ 195 (486)
...++.+++++.++ +.+ ..+|++|||+|+..|+.+++... ++..|++...+ |.....+....
T Consensus 96 ~~~~l~~~la~~~~-~~~-------~v~~~~sGsea~~~ai~~a~~~~---------~~~~vi~~~~~yhg~~~~~~~~~ 158 (434)
T 3l44_A 96 LEVKFAKMLKEAMP-ALD-------KVRFVNSGTEAVMTTIRVARAYT---------GRTKIMKFAGCYHGHSDLVLVAA 158 (434)
T ss_dssp HHHHHHHHHHHHCT-TCS-------EEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEETTCCCCSSGGGGBC-
T ss_pred HHHHHHHHHHHhCC-CCC-------EEEEeCchHHHHHHHHHHHHHhh---------CCCEEEEEcCccCCCcHHHHhhc
Confidence 34444555888886 332 48999999999999999887642 44455554444 44333222222
Q ss_pred CCCC----------------CCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----hHHH
Q 041829 196 GIHP----------------QNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP----LLAL 255 (486)
Q Consensus 196 g~g~----------------~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~----l~~I 255 (486)
|.+. ..++.+|. -|+++|++++++... .+.+|+++..++++|.+.| +++|
T Consensus 159 g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~~l~~l 228 (434)
T 3l44_A 159 GSGPSTLGTPDSAGVPQSIAQEVITVPF-------NNVETLKEALDKWGH---EVAAILVEPIVGNFGIVEPKPGFLEKV 228 (434)
T ss_dssp ------CCCBSSTTCCHHHHTTEEEECT-------TCHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCCTTHHHHH
T ss_pred CCcccccCCCCcCCCCCcCCCceEecCc-------ccHHHHHHHHHhCCC---CEEEEEEcCCCCCCCCccCCHHHHHHH
Confidence 2210 02222221 189999999976321 2456777777778888887 9999
Q ss_pred HHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccc
Q 041829 256 GNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKA 335 (486)
Q Consensus 256 ~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~ 335 (486)
.++|++||+++|+|++|.++ .....+.....++ ..|.++++ |.++++..+|+++.++ +.+ +.+.......
T Consensus 229 ~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~-~~di~t~s--K~~~~G~~iG~~~~~~-~i~-~~~~~~~~~~---- 298 (434)
T 3l44_A 229 NELVHEAGALVIYDEVITAF-RFMYGGAQDLLGV-TPDLTALG--KVIGGGLPIGAYGGKK-EIM-EQVAPLGPAY---- 298 (434)
T ss_dssp HHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTC-CCSEEEEE--GGGGTTSSCEEEEECH-HHH-TTBTTTSSBC----
T ss_pred HHHHHHcCCEEEEeccccce-eccccHHHHHcCC-CCCeeehh--hhhcCCcCeeeEEEcH-HHH-HhhccCCCcc----
Confidence 99999999999999999876 2211111111122 35666654 9888778899986643 322 2221100000
Q ss_pred cccCCccCCCCCccCCCCCCCcHHH---HHHHHHhChhhHHHHHHHHHHHHHHHHHHHhc----CCCeEEecCCCceEEE
Q 041829 336 SQANMVVDYKDWQIPLGRRFRSLKL---WMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQ----DLRFEVVTPRIFSLVC 408 (486)
Q Consensus 336 ~~~~~~~~~~~~~~~~sr~~~~l~~---~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~v~ 408 (486)
...+.....+.. .++++.+.. ++++++..++.+++++.|++ .+.+..+ ++..+++.
T Consensus 299 -------------~~~t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~ 361 (434)
T 3l44_A 299 -------------QAGTMAGNPASMASGIACLEVLQQ---EGLYEKLDELGATLEKGILEQAAKHNIDITL-NRLKGALT 361 (434)
T ss_dssp -------------CCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-EEETTEEE
T ss_pred -------------cCCCCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEE-EeeccEEE
Confidence 001111233333 334443322 34455666666666666655 3332222 33445666
Q ss_pred EEecCCCCCc-----ccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041829 409 FRLLPPHNDE-----DHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALLA 481 (486)
Q Consensus 409 f~~~~~~~~~-----~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~~ 481 (486)
+.+....... ........++.+.|.++| +.+.+. +...+|++ ...|++|+++++++|+++.+++.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~---~~~~~rl~---~~~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 362 VYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEG-VNLAPS---KYEAWFLT---TEHTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp EEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTT-EECCSS---TTCCEECC---TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCcccchhhccccCHHHHHHHHHHHHHCC-eEEeec---CCCcEEEe---cccCHHHHHHHHHHHHHHHHHHHh
Confidence 7664221100 001223456778888888 444432 22357774 467999999999999999887654
No 218
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.75 E-value=9.1e-17 Score=162.58 Aligned_cols=306 Identities=12% Similarity=0.013 Sum_probs=175.0
Q ss_pred HHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCe-EEEecCCCchhHHHHHHHhCC
Q 041829 119 MIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKL-VVYASDQTHSALQKACQIGGI 197 (486)
Q Consensus 119 ~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~-~v~~s~~~H~s~~~a~~~~g~ 197 (486)
.++.+.++++++ +.+ ..+|++|||+|+..|+.+++... ++. +|..+...|.....++...|.
T Consensus 96 ~~l~~~la~~~~-~~~-------~v~~~~~Gsea~~~ai~~a~~~~---------~~~~vi~~~~~yhg~~~~~~~~~g~ 158 (429)
T 3k28_A 96 NKLAKLVIERVP-SIE-------IVRMVNSGTEATMSALRLARGYT---------GRNKILKFIGCYHGHGDSLLIKAGS 158 (429)
T ss_dssp HHHHHHHHHHST-TCS-------EEEEESSHHHHHHHHHHHHHHHH---------TCCEEEEEETCCCCSCGGGCSSCCT
T ss_pred HHHHHHHHHhCC-CCC-------EEEEeCChHHHHHHHHHHHHHhh---------CCCEEEEECCCcCCCcHHHHHhcCC
Confidence 334455888885 222 48999999999999999887632 333 444445556444333332332
Q ss_pred CCCCeEEEeCCCCCCCc------------cCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----hHHHHHHHHH
Q 041829 198 HPQNFRVLKTDSSTNYS------------LSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP----LLALGNIAKS 261 (486)
Q Consensus 198 g~~~v~~v~~~~~~~~~------------id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~----l~~I~~ia~~ 261 (486)
.+..++......+. -|+++|++++++... .+.+|+++..++++|.+.| +++|.++|++
T Consensus 159 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~ 232 (429)
T 3k28_A 159 ---GVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGD---DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQ 232 (429)
T ss_dssp ---TC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHH
T ss_pred ---cccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCC---CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 22222211111000 189999999976321 2467777777778888888 9999999999
Q ss_pred hCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCc
Q 041829 262 NGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMV 341 (486)
Q Consensus 262 ~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~ 341 (486)
||+++|+|++|.++ ...........++ ..|.+++ .|.++++..+|+++.++ + +.+.+.......
T Consensus 233 ~~~~li~DEv~~g~-~~g~~~~~~~~~~-~~di~t~--sK~~~~G~~iG~~~~~~-~-~~~~~~~~~~~~---------- 296 (429)
T 3k28_A 233 NGALLIFDEVMTGF-RVAYNCGQGYYGV-TPDLTCL--GKVIGGGLPVGAYGGKA-E-IMRQVAPSGPIY---------- 296 (429)
T ss_dssp HTCEEEEECTTTTT-TSSTTHHHHHHTC-CCSEEEE--CGGGGTTSCCEEEEECH-H-HHTTBTTTSSBC----------
T ss_pred cCCEEEEecccccc-ccCcchHHHHhCC-CCceehh--hhhhcCCCCeEEEEEcH-H-HHhhhccCCCcc----------
Confidence 99999999999765 2211111111122 3566665 49988777789887754 3 222221110000
Q ss_pred cCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCCceEEEEEecCCCCC
Q 041829 342 VDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQD----LRFEVVTPRIFSLVCFRLLPPHND 417 (486)
Q Consensus 342 ~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~v~f~~~~~~~~ 417 (486)
...+.....+...+++..+.... +++.++..++++++++.|+++ +.+..+ ++...++.+.+......
T Consensus 297 -------~~~t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 367 (429)
T 3k28_A 297 -------QAGTLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHI-NRAGSMIGIFFTDEPVI 367 (429)
T ss_dssp -------CCCTTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEETTEEEEESSSSCCC
T ss_pred -------ccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEE-EeeccEEEEEEecCCcc
Confidence 01111223344444444332111 567777778888888877653 333222 23344566665321100
Q ss_pred c-----ccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 418 E-----DHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 418 ~-----~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
. ........++.+.|.++| +.+.+. +...+|+++ .+|++|+++++++|+++.+++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~---~~~~~r~~~---~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 368 NYDAAKSSNLQFFAAYYREMVEQG-VFLPPS---QFEGLFLST---VHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp SHHHHTTSCHHHHHHHHHHHHHTT-EECCSS---TTSCBCCCT---TCCHHHHHHHHHHHHHHHHTC
T ss_pred cccccccccHHHHHHHHHHHHHCC-eEEecC---CCCCEEEEC---CCCHHHHHHHHHHHHHHHHHH
Confidence 0 001233467788888888 444442 224577754 679999999999999887643
No 219
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.74 E-value=7.6e-16 Score=157.53 Aligned_cols=313 Identities=12% Similarity=0.072 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHH-hC----------------ccCC-CC
Q 041829 114 ATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKR-VG----------------KNSL-EK 175 (486)
Q Consensus 114 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~-~~----------------~~~~-~~ 175 (486)
..++++++.+.++++++.+.+ ..+|++|||+||..|+.+++.....+ .+ ..|. +.
T Consensus 108 ~~~l~~~la~~l~~~~~~~~~-------~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~ 180 (472)
T 1ohv_A 108 PENFVEKLRESLLSVAPKGMS-------QLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDY 180 (472)
T ss_dssp BTTHHHHHHHTGGGGCCTTCC-------EEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCC
T ss_pred HHHHHHHHHHHHHHhCCCCcC-------EEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCC
Confidence 467788876667777643322 48999999999999999987542100 00 0111 13
Q ss_pred eEEEecCCCchhHHHHHHHhCC--------CCCCeEEEeCCCCCCC-------------ccCHHHHHHHHHHHHhCCCcc
Q 041829 176 LVVYASDQTHSALQKACQIGGI--------HPQNFRVLKTDSSTNY-------------SLSPDSLAEAISRDLTIGLIP 234 (486)
Q Consensus 176 ~~v~~s~~~H~s~~~a~~~~g~--------g~~~v~~v~~~~~~~~-------------~id~~~L~~~i~~~~~~g~~p 234 (486)
.+|......|-+...+....|. +...+..+++... .+ ..|+++|+++|++....+.++
T Consensus 181 ~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 259 (472)
T 1ohv_A 181 SILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRL-KYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTV 259 (472)
T ss_dssp EEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCC-CSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred eEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcc-cCccccccccchhHHHHHHHHHHHHHHhcCCCCCCE
Confidence 3444455557665555544432 1111122333210 01 237899999997643222235
Q ss_pred EEEEEecCCccccccCC----hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCc-CCCceeeeccccc-CCCCc
Q 041829 235 FFLCATVGTTSSTAVDP----LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVE-EADSFNMNAHKWF-LTNFD 308 (486)
Q Consensus 235 ~~vv~~~~~t~tG~id~----l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~-~aDs~~~~~hK~l-~~p~~ 308 (486)
.+|++....+++|.+.| +++|.++|++||+++|+|++|.++.....-+.....++. ..|.++++ |++ +
T Consensus 260 ~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~s--K~~l~---- 333 (472)
T 1ohv_A 260 AGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMMT---- 333 (472)
T ss_dssp EEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEEC--GGGSS----
T ss_pred EEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEc--ccccc----
Confidence 67888777788999877 999999999999999999999863321110111111221 27887766 984 3
Q ss_pred ceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHH
Q 041829 309 CSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEG 388 (486)
Q Consensus 309 ~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~ 388 (486)
.|+++ + +. +. .....+. .+..++......++.++++.+..+ ++.++..+++++|++
T Consensus 334 GG~~~-~-~~-~~---~~~~~~~---------------~~T~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~ 389 (472)
T 1ohv_A 334 GGFFH-K-EE-FR---PNAPYRI---------------FNTWLGDPSKNLLLAEVINIIKRE---DLLSNAAHAGKVLLT 389 (472)
T ss_dssp EEEEE-C-GG-GS---CSSSSSS---------------CCSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHH
T ss_pred CCccC-c-hh-hc---ccccccc---------------cCccCccHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHH
Confidence 25543 2 22 10 0000000 000111111222333444443222 356677778888888
Q ss_pred HHhcC----CC-eEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHH
Q 041829 389 LVAQD----LR-FEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWR 463 (486)
Q Consensus 389 ~l~~~----~~-~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~ 463 (486)
.|+++ |+ +.-+ .+...++.|.+.. .....++.+.|.++| +.+.+. +..++|+++ +..+|++
T Consensus 390 ~L~~l~~~~~~~v~~~-~~~g~~~~~~~~~--------~~~~~~~~~~l~~~G-v~~~~~---g~~~iRi~~-~~~~t~e 455 (472)
T 1ohv_A 390 GLLDLQARYPQFISRV-RGRGTFCSFDTPD--------ESIRNKLISIARNKG-VMLGGC---GDKSIRFRP-TLVFRDH 455 (472)
T ss_dssp HHHHHHHHCTTTCEEE-EEETTEEEEECSS--------HHHHHHHHHHHHHTT-EECEEE---TTTEEEECC-CTTCCHH
T ss_pred HHHHHHhhCCCcEEee-cCCceEEEEEeCC--------hhHHHHHHHHHHHCC-eEEecC---CCCEEEEEC-CCCCCHH
Confidence 88654 43 4322 2334466665431 223467888888888 444432 345899998 8889999
Q ss_pred HHHHHHHHHHHHHHH
Q 041829 464 HVNAAWEVMQDKASA 478 (486)
Q Consensus 464 di~~~~~~l~~~~~~ 478 (486)
||++++++|++++++
T Consensus 456 ~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 456 HAHLFLNIFSDILAD 470 (472)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988764
No 220
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.74 E-value=3e-16 Score=158.66 Aligned_cols=306 Identities=12% Similarity=0.033 Sum_probs=175.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHH
Q 041829 114 ATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQ 193 (486)
Q Consensus 114 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 193 (486)
..+...++.++++++++ +.+ ..++++|||+|+..|+..++... . ++.+|......|.....+..
T Consensus 90 ~~~~~~~la~~l~~~~~-~~~-------~v~~~~ggsea~~~al~~a~~~~--~------~~~vi~~~~~yhg~~~~~~~ 153 (427)
T 3fq8_A 90 PCALENVLAEMVNDAVP-SIE-------MVRFVNSGTEACMAVLRIMRAYT--G------RDKIIKFEGCYHGHADMFLV 153 (427)
T ss_dssp CCHHHHHHHHHHHHHST-TCS-------EEEEESSHHHHHHHHHHHHHHHH--C------CCEEEEEETCCCCSCGGGCS
T ss_pred CCHHHHHHHHHHHHhCC-CCC-------EEEEeCCHHHHHHHHHHHHHHhh--C------CCEEEEECCCcCCCCHHHHH
Confidence 35567777788999997 332 58999999999999998777532 0 23344444444543222211
Q ss_pred HhCCC-------C---------CCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----hH
Q 041829 194 IGGIH-------P---------QNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP----LL 253 (486)
Q Consensus 194 ~~g~g-------~---------~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~----l~ 253 (486)
..|.+ . ..++.+|.+ |+++|++++++.. ..+.+|+++..++++|.+.| ++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~~---~~~~~vi~~p~~~~~G~~~~~~~~l~ 223 (427)
T 3fq8_A 154 KAGSGVATLGLPSSPGVPKKTTANTLTTPYN-------DLEAVKALFAENP---GEIAGVILEPIVGNSGFIVPDAGFLE 223 (427)
T ss_dssp SCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-------CHHHHHHHHHHST---TTEEEEEECSSBCTTSCBCCCTTHHH
T ss_pred hcCCcccccCCCCCCCCCCcccCceeecCCC-------CHHHHHHHHHhCC---CCEEEEEEcCCcCCCCCcCCCHHHHH
Confidence 11110 0 023334321 8999999997631 23567888888888999988 99
Q ss_pred HHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccc
Q 041829 254 ALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKN 333 (486)
Q Consensus 254 ~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~ 333 (486)
+|.++|++||+++++|++|+++ .....+.....++ ..|.++++ |.+++....|+++.++ + +.+.+.....+..
T Consensus 224 ~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~-~~di~t~s--K~~~~G~~~G~~~~~~-~-~~~~~~~~~~~~~- 296 (427)
T 3fq8_A 224 GLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGV-TPDLTTLG--KIIGGGLPVGAYGGKR-E-IMQLVAPAGPMYQ- 296 (427)
T ss_dssp HHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTC-CCSEEEEC--GGGGTTSSCEEEEECH-H-HHTTBTTTSSBCC-
T ss_pred HHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCC-CCChhhhh--hhhhCCcceEEEEEcH-H-HHHhhccCCCccc-
Confidence 9999999999999999999865 2211111111122 35766665 9998656688886643 3 2222221100000
Q ss_pred cccccCCccCCCCCccCCCCCCCcHHHH---HHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCCceEE
Q 041829 334 KASQANMVVDYKDWQIPLGRRFRSLKLW---MVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDL---RFEVVTPRIFSLV 407 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~sr~~~~l~~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~---~~~~~~~~~~~~v 407 (486)
..+-....+... ++++.+..+ ++.++..++.+++++.|+++. ++....+....++
T Consensus 297 ----------------~~t~~~~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~ 357 (427)
T 3fq8_A 297 ----------------AGTLSGNPLAMTAGIKTLELLRQP---GTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMF 357 (427)
T ss_dssp ----------------CCTTTTCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEE
T ss_pred ----------------cCCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEE
Confidence 011112333333 334433333 345566666666666665421 1211112233456
Q ss_pred EEEecCCCCC-----cccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 408 CFRLLPPHND-----EDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 408 ~f~~~~~~~~-----~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
.+.+...... .........++.+.|.++| +.+.+.. . .|+++ +..+|++|+++++++|+++.++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G-i~v~~~~---~--~r~~~-~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 358 GFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG-IYLAPSQ---F--EAGFT-SLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp EEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTT-EECCSST---T--SCEEC-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCccccccccccccHHHHHHHHHHHHHCC-cEEecCC---C--CCEEe-eCcCCHHHHHHHHHHHHHHHHh
Confidence 6665432110 0001223456788888888 4444321 1 24555 5678999999999999988754
No 221
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.74 E-value=6.8e-17 Score=162.80 Aligned_cols=252 Identities=10% Similarity=-0.004 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecC-CCchhHHHHHH---
Q 041829 118 EMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASD-QTHSALQKACQ--- 193 (486)
Q Consensus 118 e~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~-~~H~s~~~a~~--- 193 (486)
.+++.+++++++|.+... .-++++|||+||..++.+... +++.|+++. ..|.++...+.
T Consensus 67 ~~~l~~~la~~~g~~~~~------~~i~~~sGt~Ai~~al~al~~-----------~Gd~Vl~~~~~~y~~~~~~~~l~g 129 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGL------VRPQIISGTHAISTALFGILR-----------PGDELLYITGKPYDTLEEIVGVRG 129 (431)
T ss_dssp HHHHHHHHHHHTTCSEEC------CBTTSCSHHHHHHHHHHTTCC-----------TTCEEEECSSSCCTTHHHHTTSSS
T ss_pred HHHHHHHHHHHhCCCccc------ccceeeCHHHHHHHHHHHhCC-----------CCCEEEEeCCCCchhHHHHHhhcc
Confidence 455556699999987641 112245789999888765432 677788887 88988887664
Q ss_pred -------HhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEec----CCccccccCChHHHHHHHHH-
Q 041829 194 -------IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATV----GTTSSTAVDPLLALGNIAKS- 261 (486)
Q Consensus 194 -------~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~----~~t~tG~id~l~~I~~ia~~- 261 (486)
..|+ +++.+|.+++ +.+|+++|+++++++ +.+|+++. +++++|.++|+++|+++|++
T Consensus 130 ~~~~~~~~~G~---~~~~v~~~~~--~~~d~e~l~~~l~~~------tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~ 198 (431)
T 3ht4_A 130 KGVGSFKEYNI---GYNAVPLTEG--GLVDFEAVAAAIHSN------TKMIGIQRSKGYATRPSFTISQIKEMIAFVKEI 198 (431)
T ss_dssp CSSSCSGGGTC---EEEECCBCTT--SSBCHHHHHHHCCTT------EEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHH
T ss_pred cccchHHHcCC---EEEEeCCCCC--CCcCHHHHHhhcCCC------CeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhh
Confidence 3677 8899998764 699999999998643 46788886 77888888999999999999
Q ss_pred -hCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCC---CCcceEEEEeCchHHHHHhcC-Cccccccccc
Q 041829 262 -NGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLT---NFDCSALWVKDRNTLIQSLST-NPEFLKNKAS 336 (486)
Q Consensus 262 -~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~---p~~~g~l~~r~~~~~~~~~~~-~~~yl~~~~~ 336 (486)
+|++++||++|+.+....... . . ++|.++.++||++++ |.| |+++.+ ++.+...... ....+.
T Consensus 199 ~~~~~livDea~~~~~~~~~~~-~----~-g~Di~~~S~sK~lgg~~~~~G-G~v~~~-~~li~~l~~~~~~~~~g---- 266 (431)
T 3ht4_A 199 KPDVVVFVDNCYGEFIEEQEPC-H----V-GADLMAGSLIKNPGGGIVKTG-GYIVGK-EQYVEACAYRLTSPGIG---- 266 (431)
T ss_dssp CTTCEEEEECTTCTTSSSCCGG-G----T-TCSEEEEETTSGGGTTTCSSC-EEEEEC-HHHHHHHHHHHSCTTTT----
T ss_pred CCCCEEEEeCCChhhccCCCcc-c----c-CCeEEEcCccccCCCCCCCce-EEEEec-HHHHHHHHHHhccCCcc----
Confidence 999999999998765322211 1 1 589999999999765 544 777665 3333222110 111110
Q ss_pred ccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCce-----EEEEEe
Q 041829 337 QANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIFS-----LVCFRL 411 (486)
Q Consensus 337 ~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~-----~v~f~~ 411 (486)
...+..+.. .|.+++ +...+..++++..++++++++.|+++ ++++... ... ++.+.+
T Consensus 267 ------------~~~~~~~~~--~~~~~~--~l~~~~~~~~~~~~~a~~l~~~L~~~-g~~v~p~-~~~~~~~li~~i~l 328 (431)
T 3ht4_A 267 ------------AEAGASLYS--LQEMYQ--GFFLAPHVAGQALKGAIFTAAFLEKL-GMNTSPA-WNAPRTDLIQSVQF 328 (431)
T ss_dssp ------------TSCSCCCSC--SHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEESC-TTSCCSSSCCEEEC
T ss_pred ------------cccCccHHH--HHHHHh--HhhhHHHHHHHHHHHHHHHHHHHHhC-cCEecCC-CCCCCccEEEEEEe
Confidence 011111111 122222 23445678888999999999999998 6776432 222 666776
Q ss_pred cCCCCCcccchHHHHHHHHHHHcc
Q 041829 412 LPPHNDEDHGNKLNHKLLDDINST 435 (486)
Q Consensus 412 ~~~~~~~~~~~~~~~~l~~~l~~~ 435 (486)
.. .+...++++.|.+.
T Consensus 329 ~~--------~~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 329 DD--------KDRMIAFCQAIQYA 344 (431)
T ss_dssp CC--------HHHHHHHHHHHHHT
T ss_pred CC--------HHHHHHHHHHHHhc
Confidence 42 23445677777654
No 222
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.73 E-value=7.5e-16 Score=156.05 Aligned_cols=307 Identities=14% Similarity=0.088 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHH
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQI 194 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 194 (486)
.+...++.++++++++ ..+ ..++++|||+|+..++.++|... + ++.+|+.....|.....+...
T Consensus 95 ~~~~~~l~~~la~~~~-~~~-------~v~~~~sgseA~~~al~~ar~~~-~-------~~~vi~~~~~yhg~~~~~~~~ 158 (434)
T 2epj_A 95 GEAEVLLAEKILGYVK-RGG-------MIRFVNSGTEATMTAIRLARGYT-G-------RDLILKFDGCYHGSHDAVLVA 158 (434)
T ss_dssp CHHHHHHHHHHHHHHC-TTC-------EEEEESSHHHHHHHHHHHHHHHH-C-------CCEEEEEETCCCCSSGGGSEE
T ss_pred CHHHHHHHHHHHHhCC-CCC-------EEEEeCCHHHHHHHHHHHHHHhh-C-------CCeEEEEcCCcCCCCHHHHHh
Confidence 4455666677888884 222 48999999999999999876432 0 334444444445322211111
Q ss_pred -------------hCCCC---CCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----hHH
Q 041829 195 -------------GGIHP---QNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP----LLA 254 (486)
Q Consensus 195 -------------~g~g~---~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~----l~~ 254 (486)
.|+.. ..++.+|. .|+++|++++++.. ..+.+|+++...+++|.+.| +++
T Consensus 159 ~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~ 228 (434)
T 2epj_A 159 AGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALERVFAEYG---DRIAGVIVEPVIANAGVIPPRREFLAA 228 (434)
T ss_dssp CC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHHHHHHHG---GGEEEEEECSSBCSSSCBCCCHHHHHH
T ss_pred cCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHHHHHhCC---CCEEEEEEeCCcCCCCccCCCHHHHHH
Confidence 12200 13555553 38999999997631 12556777766677999887 999
Q ss_pred HHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCccccccc
Q 041829 255 LGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNK 334 (486)
Q Consensus 255 I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~ 334 (486)
|.++|++||+++++|++|+++ ...+.+.....++ ..|.+++ +|+++.....|+++.++ + +.+.+.......
T Consensus 229 l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~s~--sK~l~~G~~~G~v~~~~-~-~~~~l~~~~~~~--- 299 (434)
T 2epj_A 229 LQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNI-EGDIIVL--GKIIGGGFPVGAVAGSR-E-VMSLLTPQGKVF--- 299 (434)
T ss_dssp HHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTC-CCSEEEE--EGGGGTTSSCEEEEECH-H-HHTTBTTTSSBC---
T ss_pred HHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCC-CCCeeee--cchhcCCcceeeeeecH-H-HHHhhccCCCcc---
Confidence 999999999999999999865 2211111111122 3676654 59998756688888764 3 222221100000
Q ss_pred ccccCCccCCCCCccCCCCCCCcHH---HHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCCceEEE
Q 041829 335 ASQANMVVDYKDWQIPLGRRFRSLK---LWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDL---RFEVVTPRIFSLVC 408 (486)
Q Consensus 335 ~~~~~~~~~~~~~~~~~sr~~~~l~---~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~---~~~~~~~~~~~~v~ 408 (486)
...+-....+. +.++++.+.. +++.++..++++++++.|+++. ++....++..+++.
T Consensus 300 --------------~~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~ 362 (434)
T 2epj_A 300 --------------NAGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQ 362 (434)
T ss_dssp --------------CCCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEE
T ss_pred --------------cCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEE
Confidence 00011122233 3334443322 3456677778888888887641 33211133445677
Q ss_pred EEecCCCCCc-c----cchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 041829 409 FRLLPPHNDE-D----HGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 409 f~~~~~~~~~-~----~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
+.+....... . .......++.+.|.++| +.+.+.. ...+|+ +..+|++|+++++++|+++.+++.
T Consensus 363 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~~---~~~~~~---~~~~t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 363 LFIGVEEVSNAAQARKADKKFYVKLHEEMLRRG-VFIAPSN---LEAVFT---GLPHQGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp EEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTT-EECCSST---TSCEEC---CTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcccchhccccCHHHHHHHHHHHHHCC-eEEeccC---CCcEEE---eccCCHHHHHHHHHHHHHHHHHHh
Confidence 7765311000 0 00123467888888887 5554432 123444 457799999999999999887663
No 223
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.73 E-value=1.3e-15 Score=155.07 Aligned_cols=306 Identities=12% Similarity=0.026 Sum_probs=175.0
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHH
Q 041829 114 ATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQ 193 (486)
Q Consensus 114 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~ 193 (486)
..+++.++.+|++++++ +.+ ..++++|||+|+..++.++|... + ++.+|+.....|.....+..
T Consensus 95 ~~~~~~~la~~l~~~~~-~~~-------~v~~~~gg~eA~~~al~~ar~~~-~-------~~~vi~~~~~yhg~~~~~~~ 158 (453)
T 2cy8_A 95 SHPLEVRWAERIVAAFP-SIR-------KLRFTGSGTETTLLALRVARAFT-G-------RRMILRFEGHYHGWHDFSAS 158 (453)
T ss_dssp SCHHHHHHHHHHHHHCT-TCS-------EEEEESCHHHHHHHHHHHHHHHH-C-------CCEEEEECC-----------
T ss_pred CCHHHHHHHHHHHhhCC-CCC-------EEEEeCCHHHHHHHHHHHHHHhh-C-------CCEEEEEcCCcCCCchhhHh
Confidence 56789999999999986 332 48999999999999999876421 1 33444444334432222211
Q ss_pred H----------hCCCC---CCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----hHHHH
Q 041829 194 I----------GGIHP---QNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP----LLALG 256 (486)
Q Consensus 194 ~----------~g~g~---~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~----l~~I~ 256 (486)
. .|+.. ..++.+|. .|+++|+++|++.. ..+.+|+++...+++|.+-| +++|.
T Consensus 159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~---~~~~~vi~ep~~~~tG~~~~~~~~l~~l~ 228 (453)
T 2cy8_A 159 GYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFANHG---SDIAAFIAEPVGSHFGVTPVSDSFLREGA 228 (453)
T ss_dssp -----------------CGGGEEEECT-------TCHHHHHHHHHHHG---GGEEEEEECSSEHHHHTEECCHHHHHHHH
T ss_pred hcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHhcC---CCEEEEEECCCCCCCCCcCCCHHHHHHHH
Confidence 1 13210 02333332 38999999997531 12456766666677898877 99999
Q ss_pred HHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCC-cccccccc
Q 041829 257 NIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTN-PEFLKNKA 335 (486)
Q Consensus 257 ~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~-~~yl~~~~ 335 (486)
++|++||+++++|++|+++ .....+.....++ ..|.++ +.|+++.+..+|+++.++ + +.+.+... ....
T Consensus 229 ~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~s--~sK~l~~G~~~G~v~~~~-~-~~~~l~~~~~~~~---- 298 (453)
T 2cy8_A 229 ELARQYGALFILDEVISGF-RVGNHGMQALLDV-QPDLTC--LAKASAGGLPGGILGGRE-D-VMGVLSRGSDRKV---- 298 (453)
T ss_dssp HHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTC-CCSEEE--EEGGGGTTSSCEEEEECH-H-HHTTSSSCC--------
T ss_pred HHHHHcCCEEEEecCcccc-ccCchhhhHHhCC-CCcEEE--EChhhhCCcceEEEechH-H-HHHHhccccCCCc----
Confidence 9999999999999999865 3221111101122 357654 459998767789988864 2 22222110 0000
Q ss_pred cccCCccCCCCCccCCCCCCCcHH---HHHHHHH-hChhhHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCCceEE
Q 041829 336 SQANMVVDYKDWQIPLGRRFRSLK---LWMVLRL-YGLENLQGYIRNHIQLAKHFEGLVAQD----LRFEVVTPRIFSLV 407 (486)
Q Consensus 336 ~~~~~~~~~~~~~~~~sr~~~~l~---~~~~l~~-~g~~g~~~~~~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~v 407 (486)
....+-....+. +.++++. + . +++.++..++++++++.|+++ +-...+ ++...++
T Consensus 299 ------------~~~~t~~~n~~~~aa~~aal~~~~-~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~ 361 (453)
T 2cy8_A 299 ------------LHQGTFTGNPITAAAAIAAIDTIL-E---DDVCAKINDLGQFAREAMNHLFARKGLNWLA-YGRFSGF 361 (453)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHH-H---TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-ECCTTEE
T ss_pred ------------eeCCCCCCCHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEE-EEeeeEE
Confidence 000011112233 3334444 3 2 345567777888888887653 322222 3445577
Q ss_pred EEEecC-----C----CC-Cccc-chHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q 041829 408 CFRLLP-----P----HN-DEDH-GNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKA 476 (486)
Q Consensus 408 ~f~~~~-----~----~~-~~~~-~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~ 476 (486)
.+.+.. . .. +... ......++.+.|.++| +.+.+. + .+|+ +...+++|+++++++|+++.
T Consensus 362 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G-v~v~~~---~--~~~l---~~~~t~~~i~~~l~~l~~~l 432 (453)
T 2cy8_A 362 HLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEG-VDIGGR---G--SVFL---SAQHEREHVEHLVTTFDRVL 432 (453)
T ss_dssp EEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTT-EECBTT---T--EEEC---CTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEeccccccccccccccccccccHHHHHHHHHHHHHCC-eEEeCC---C--CEEe---eccCCHHHHHHHHHHHHHHH
Confidence 777753 1 00 0000 1123456788888887 444321 2 2554 46779999999999999998
Q ss_pred HHHHH
Q 041829 477 SALLA 481 (486)
Q Consensus 477 ~~l~~ 481 (486)
+++.+
T Consensus 433 ~~~~~ 437 (453)
T 2cy8_A 433 DRLAD 437 (453)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87754
No 224
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.72 E-value=2e-15 Score=152.66 Aligned_cols=302 Identities=10% Similarity=0.038 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHh
Q 041829 116 ELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQIG 195 (486)
Q Consensus 116 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~ 195 (486)
+...++.++++++++ ..+ ..+|++|||+|+..|+..++... . ++.+|......|.....++...
T Consensus 93 ~~~~~la~~l~~~~~-~~~-------~v~~~~sGsea~~~al~~a~~~~--~------~~~ii~~~~~yhg~~~~~~~~~ 156 (429)
T 4e77_A 93 EMEVKMAQLVTDLVP-TMD-------MVRMVNSGTEATMSAIRLARGYT--G------RDKIIKFEGCYHGHADCLLVKA 156 (429)
T ss_dssp HHHHHHHHHHHHHST-TCS-------EEEEESSHHHHHHHHHHHHHHHH--C------CCEEEEETTCCCC---------
T ss_pred HHHHHHHHHHHhhCC-CCC-------EEEEeCcHHHHHHHHHHHHHHhh--C------CCEEEEEcCccCCCChhhhhhc
Confidence 445556666889886 232 48999999999999999877532 0 2334444555565544333222
Q ss_pred CCCCC----------------CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----hHHH
Q 041829 196 GIHPQ----------------NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP----LLAL 255 (486)
Q Consensus 196 g~g~~----------------~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~----l~~I 255 (486)
|.+.. .+..+|. -|+++|++++++. +..+.+|+++..++++|.+.| +++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~---~~~~~~vi~ep~~~~~g~~~~~~~~l~~l 226 (429)
T 4e77_A 157 GSGALTLGQPNSPGVPTDFAKHTLTCTY-------NDLASVRQAFEQY---PQEVACIIVEPVAGNMNCIPPLPEFLPGL 226 (429)
T ss_dssp ---------CCCTTSCGGGGTTEEEECT-------TCHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHH
T ss_pred CCcccccCCCCcCCCCCccCCceeecCC-------CCHHHHHHHHHhc---CCCEEEEEECCccCCCCCcCCCHHHHHHH
Confidence 22110 1122221 2899999999752 123456676666677788887 9999
Q ss_pred HHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccc
Q 041829 256 GNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKA 335 (486)
Q Consensus 256 ~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~ 335 (486)
.++|++||+++|+|++|+++ .....+.....++ ..|.++++ |.+++....|+++.++ + +.+.+.......
T Consensus 227 ~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~-~pdi~t~s--K~~~~G~~~G~~~~~~-~-~~~~l~~~~~~~---- 296 (429)
T 4e77_A 227 RALCDEFGALLIIDEVMTGF-RVALAGAQDYYHV-IPDLTCLG--KIIGGGMPVGAFGGRR-E-VMNALAPTGPVY---- 296 (429)
T ss_dssp HHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTC-CCSEEEEE--GGGGTTSCCEEEEECH-H-HHTTBTTTSSBC----
T ss_pred HHHHHHcCCEEEEeccccCc-ccCcchHHHhcCC-CCCeeeec--ccccCCCCeEEEEECH-H-HHHHhccCCCcc----
Confidence 99999999999999999865 2211111111122 34766554 9988767788877643 3 222221110000
Q ss_pred cccCCccCCCCCccCCCCCCCcHH---HHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhc----CCCeEEecCCCceEEE
Q 041829 336 SQANMVVDYKDWQIPLGRRFRSLK---LWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQ----DLRFEVVTPRIFSLVC 408 (486)
Q Consensus 336 ~~~~~~~~~~~~~~~~sr~~~~l~---~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~v~ 408 (486)
...+-....+. +.++++.+.. ++++++..++.+++++.|++ .+ +....+....++.
T Consensus 297 -------------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~ 359 (429)
T 4e77_A 297 -------------QAGTLSGNPIAMAAGFACLTEISQ---VGVYETLTELTDSLATGLRHAAKEEN-IPLVVNHVGGMFG 359 (429)
T ss_dssp -------------C--CCCCCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEE
T ss_pred -------------ccCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEEeeeEEE
Confidence 00011122333 3344444422 34455566666666666654 33 2211123345666
Q ss_pred EEecCCCCCc------ccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 041829 409 FRLLPPHNDE------DHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 409 f~~~~~~~~~------~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~ 477 (486)
+.+....... ........++.+.|.++| +.+.+.. ...+|+ +..+|++|+++++++|+++.+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-i~v~~~~---~~~~~~---~~~~t~e~i~~~l~~l~~~l~ 427 (429)
T 4e77_A 360 LFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEG-VYLAPSA---FEAGFM---SLAHSNEDIQKTVNAARRCFA 427 (429)
T ss_dssp EECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTT-EECCSST---TSCEEC---CTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEccCcccccccccccccHHHHHHHHHHHHHCC-eEEeecC---CCCEEE---eccCCHHHHHHHHHHHHHHHH
Confidence 6664321000 001133467888888888 4444331 123444 457799999999999998764
No 225
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.70 E-value=3.3e-15 Score=146.08 Aligned_cols=329 Identities=12% Similarity=0.049 Sum_probs=196.6
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCC--
Q 041829 107 SWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQT-- 184 (486)
Q Consensus 107 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~-- 184 (486)
.|.......++|.-+.+..+++||++...+ +..+=.-||+.||+.+..+..+ |++.|+.-+..
T Consensus 91 yYgGce~vD~iE~la~~rak~lF~a~~A~w----~VNVQP~SGs~AN~avy~All~-----------PGD~ilg~~l~~G 155 (490)
T 3ou5_A 91 YYGGAEVVDEIELLCQRRALEAFDLDPAQW----GVNVQPYSGSPANLAVYTALLQ-----------PHDRIMGLDLPDG 155 (490)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCTTTE----EEECCCSSHHHHHHHHHHHHCC------------CCCEECBC----
T ss_pred ccCCChHHHHHHHHHHHHHHHHhCCCcccc----CCCCCcCCHHHHHHHHHHHHcC-----------CCCEEEecccCCC
Confidence 344556788999999999999999987421 0135556899999988877655 67777765444
Q ss_pred -chhHHH-----HHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHH
Q 041829 185 -HSALQK-----ACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNI 258 (486)
Q Consensus 185 -H~s~~~-----a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~i 258 (486)
|.+.-. .....|.-- +++..++|++ ++.||.|.+++..++.+ |.+|++- .+..-..-|.+++.+|
T Consensus 156 GHltHg~~~~~~~v~~sg~~~-~~~~Y~vd~~-t~~IDyd~~~~~A~~~k-----PklIi~G--~SaY~r~id~~~~reI 226 (490)
T 3ou5_A 156 GHLTHGYMSDVKRISATSIFF-ESMPYKLNPK-TGLIDYNQLALTARLFR-----PRLIIAG--TSAYARLIDYARMREV 226 (490)
T ss_dssp -------------------------CBCEETT-TTEECHHHHHHHHHHHC-----CSEEEEC--CSSCCSCCCHHHHHHH
T ss_pred CcccccccCCCcccccccccc-cccccccCCC-CCcccHHHHHHHHhhcC-----CCeEEEC--CccCccccCHHHHHHH
Confidence 544432 222233310 3444556654 47999999999987763 7777654 4455566799999999
Q ss_pred HHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHH-HHhcCCcccccccccc
Q 041829 259 AKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLI-QSLSTNPEFLKNKASQ 337 (486)
Q Consensus 259 a~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~-~~~~~~~~yl~~~~~~ 337 (486)
|++.|+++++|.||-.+.+....+..- ++.||+++.+.||.|.+|. .|++++++...-. ........|-....-+
T Consensus 227 Ad~vGA~Lm~DmAHiaGLVA~g~~psP---~~~ADvVTtTTHKTLrGPr-GG~Il~~~~~~~~~~k~~~~~~~~~~kkin 302 (490)
T 3ou5_A 227 CDEVKAHLLADMAHISGLVAAKVIPSP---FKHADIVTTTTHKTLRGAR-SGLIFYRKGVKAVDPKTGREIPYTFEDRIN 302 (490)
T ss_dssp HHHHTCEEEEECGGGHHHHHTTSSCCG---GGTCSEEEEESSSTTCSCS-CEEEEEECSEEEECC--CCEEECCCHHHHH
T ss_pred HhhcccEEEechhhhhhhhcccccCCc---cccceEEeccccccccCCC-ceEEEeccccccccccccchhHHHHHHHHH
Confidence 999999999999998877655444433 3479999999999999996 6888888631000 0000000000000000
Q ss_pred cCCccCCCCCccCCCCCCCcH-HHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CCCceEEEEEecCCC
Q 041829 338 ANMVVDYKDWQIPLGRRFRSL-KLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDLRFEVVT-PRIFSLVCFRLLPPH 415 (486)
Q Consensus 338 ~~~~~~~~~~~~~~sr~~~~l-~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~-~~~~~~v~f~~~~~~ 415 (486)
.. . -.+++++.....+ +...+++..-...+++..++..++|+.|.+.|.+. |+.++. ..+.+++.+.+.+.+
T Consensus 303 ~a-V----FPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGgTdnHlvLvDl~~~g 376 (490)
T 3ou5_A 303 FA-V----FPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKG 376 (490)
T ss_dssp HH-H----TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGT
T ss_pred hh-c----CccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCceEEEEeccccC
Confidence 00 0 0022344332222 23334554334567888899999999999999997 999985 456678888876543
Q ss_pred CCcccchHHHHHHHHHHHccCcEEEEeeeE--C----CEeEEEEEe---cCCCCCHHHHHHHHHHHHHHHH
Q 041829 416 NDEDHGNKLNHKLLDDINSTGKIFISHTVL--S----GKYILRFAV---GAPLTEWRHVNAAWEVMQDKAS 477 (486)
Q Consensus 416 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~----~~~~lRi~~---~~~~~t~~di~~~~~~l~~~~~ 477 (486)
.+ . .+..+.|.+.| +.+.-..+ + ....|||.. +.....++|++++.+.|.+++.
T Consensus 377 ~t----G---~~ae~~Le~ag-ItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 377 LD----G---ARAERVLELVS-ITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CC----H---HHHHHHHHHTT-EECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CC----H---HHHHHHHHHcC-cEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 21 1 23333444455 33322111 1 124799976 3335578999999888877654
No 226
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.69 E-value=1.4e-15 Score=157.98 Aligned_cols=351 Identities=10% Similarity=0.032 Sum_probs=199.4
Q ss_pred ccccChhhHHHHHH-HHHHHHHHcCC--CC-CCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecC
Q 041829 107 SWITSPAATELEMI-VLDWLAKLLKL--PE-DFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASD 182 (486)
Q Consensus 107 ~~~~~~~~~~le~~-~~~~la~l~g~--~~-~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~ 182 (486)
.|...++...+.++ +..|+.+.++. +. + ....++|+|+++++..++.+...+.+ ..+++.|+++.
T Consensus 133 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~-----~~~I~~t~G~~eal~~~~~~l~~~~l------~~~Gd~Vlv~~ 201 (546)
T 2zy4_A 133 NYPVPPRMLNISEKIVRQYIIREMGADAIPSE-----SVNLFAVEGGTAAMAYIFESLKLNGL------LKAGDKVAIGM 201 (546)
T ss_dssp SCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGG-----GEEEEEEEHHHHHHHHHHHHHHHTTS------SCTTCEEEEEE
T ss_pred CCCCCcCCHHHHHHHHHHHHHHhccCCCCCCC-----cceEEEECCHHHHHHHHHHHhhhhhc------CCCCCEEEEeC
Confidence 45444445555555 45566666543 11 1 12589999999988777665321100 01577888899
Q ss_pred CCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC---hHHHHHHH
Q 041829 183 QTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP---LLALGNIA 259 (486)
Q Consensus 183 ~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~---l~~I~~ia 259 (486)
.+|+.+..++...+.|. +++.+|++++++|.+|+++|++++.. ++.+|+++.++|+||.+-+ +++|+++|
T Consensus 202 P~y~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a 274 (546)
T 2zy4_A 202 PVFTPYIEIPELAQYAL-EEVAINADPSLNWQYPDSELDKLKDP------AIKIFFCVNPSNPPSVKMDQRSLERVRNIV 274 (546)
T ss_dssp SCCHHHHHHHHSTTSCC-EEEEEECBGGGTTBCCHHHHGGGGST------TEEEEEEESSCSSSCBCCCHHHHHHHHHHH
T ss_pred CCCccHHHHHHHcCCCc-EEEEEecCcccCCCCCHHHHHHhhCC------CCeEEEEECCCCCCCccCCHHHHHHHHHHH
Confidence 99999998877665322 78889988766688999999887632 2567888899999999965 66788888
Q ss_pred --HHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCCc--------
Q 041829 260 --KSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTNP-------- 328 (486)
Q Consensus 260 --~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~~-------- 328 (486)
+++|+++++|++|+.+.......... ....+.++.+++|+++.| .-+|+++..+...+.......+
T Consensus 275 ~~~~~~~~ii~De~y~~~~~~~~s~~~~---~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~ 351 (546)
T 2zy4_A 275 AEHRPDLMILTDDVYGTFADDFQSLFAI---CPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALD 351 (546)
T ss_dssp HHTCTTCEEEEECTTGGGSTTCCCHHHH---CGGGEEEEEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHH
T ss_pred HhccCCcEEEEeCcchhhcccCcCHHHh---CCCCEEEEEeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHH
Confidence 78999999999998754211111111 113457788999999755 3489988876533322211110
Q ss_pred -ccccc--cccccCC----ccCCCCCccCCCCCCCcHHHHH-----HHHHh--ChhhHHHHHHHHHHHHHHHHHHHhcCC
Q 041829 329 -EFLKN--KASQANM----VVDYKDWQIPLGRRFRSLKLWM-----VLRLY--GLENLQGYIRNHIQLAKHFEGLVAQDL 394 (486)
Q Consensus 329 -~yl~~--~~~~~~~----~~~~~~~~~~~sr~~~~l~~~~-----~l~~~--g~~g~~~~~~~~~~~a~~l~~~l~~~~ 394 (486)
.|-.- ......- ..+........+.....+...+ ....+ +....+++.+...++.+.+.+.|. .
T Consensus 352 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~- 429 (546)
T 2zy4_A 352 HRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG-M- 429 (546)
T ss_dssp HHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-S-
T ss_pred HHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-C-
Confidence 00000 0000000 0000000000000111111111 11112 334456666667777777877775 3
Q ss_pred CeEEecCCCceEE-EEEecCCC---CCcc-------cchHHHHHHHHHHHccCcEEEEeeeEC-CEeEEEEEecCCCCCH
Q 041829 395 RFEVVTPRIFSLV-CFRLLPPH---NDED-------HGNKLNHKLLDDINSTGKIFISHTVLS-GKYILRFAVGAPLTEW 462 (486)
Q Consensus 395 ~~~~~~~~~~~~v-~f~~~~~~---~~~~-------~~~~~~~~l~~~l~~~g~~~~~~~~~~-~~~~lRi~~~~~~~t~ 462 (486)
++.. .++..+++ .+++.... .... ..+ ....+.+.+.+.|..+..+..+. +..++|+++. ..++
T Consensus 430 ~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~-~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~--~~~~ 505 (546)
T 2zy4_A 430 PPLR-DENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSS-TGDMLFRIADETGIVLLPGRGFGSNRPSGRASLA--NLNE 505 (546)
T ss_dssp SCCC-CTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCC-HHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESS--SSCH
T ss_pred Cccc-CCCCeeEEEEEEHHHhhcccccHHHHHHhhccCC-HHHHHHHHHHHCCEEEeCccccCCCCCeEEEEec--cCCH
Confidence 3332 34555544 44442100 0000 000 11234555666775555544332 3468999993 3479
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 041829 463 RHVNAAWEVMQDKASALLARLS 484 (486)
Q Consensus 463 ~di~~~~~~l~~~~~~l~~~~~ 484 (486)
+++++++++|+++.+++.+++.
T Consensus 506 e~i~~~~~~l~~~l~~~~~~~~ 527 (546)
T 2zy4_A 506 YEYAAIGRALRKMADELYAEYS 527 (546)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887665
No 227
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.68 E-value=3.1e-15 Score=149.33 Aligned_cols=295 Identities=11% Similarity=-0.008 Sum_probs=182.9
Q ss_pred cccccChhh-----HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCe----
Q 041829 106 FSWITSPAA-----TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKL---- 176 (486)
Q Consensus 106 ~~~~~~~~~-----~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~---- 176 (486)
..|....+. .++++++.+|+. ..|.+... ..+.++|+|+++++..++.+..+ +++
T Consensus 57 ~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~----~~~i~~t~G~~~al~~~~~~l~~-----------~Gd~~~~ 120 (391)
T 3bwn_A 57 SYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATE----DRYIVVGTGSTQLCQAAVHALSS-----------LARSQPV 120 (391)
T ss_dssp SSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCS----SSEEEEEEHHHHHHHHHHHHHHH-----------TSSSSSE
T ss_pred hcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCC----CCeEEEeCChHHHHHHHHHHhcC-----------CCCCCcc
Confidence 345555555 889999888876 44553210 02589999999998887776544 566
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHH
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALG 256 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~ 256 (486)
.|+++...|.++...++..|. +++.+++|.++ ++ . .++.+|+++.++|+||.+-+ +|+
T Consensus 121 ~Vlv~~P~y~~~~~~~~~~g~---~~~~~~~d~~~---l~--------~------~~~k~v~l~~p~NPtG~~~~--~l~ 178 (391)
T 3bwn_A 121 SVVAAAPFYSTYVEETTYVRS---GMYKWEGDAWG---FD--------K------KGPYIELVTSPNNPDGTIRE--TVV 178 (391)
T ss_dssp EEEECSSCCTHHHHHHHTTCB---TTEEEEEESTT---CC--------C------CSCEEEEEESSCTTTCCCCC--CCC
T ss_pred eEEEcCCCchhHHHHHHHcCC---eEEEecCCHHH---cC--------C------CCCEEEEECCCCCCCchhHH--HHH
Confidence 899999999999999999999 89999987542 22 0 13567888999999999975 454
Q ss_pred HHHHHhC--CEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCCcccccc
Q 041829 257 NIAKSNG--MWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTNPEFLKN 333 (486)
Q Consensus 257 ~ia~~~g--~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~~~yl~~ 333 (486)
+ ++++ +++++|++|+.. .... +......+.+..+++|.++.| ..+|++++.++..+.. +.....+...
T Consensus 179 ~--~~~~~~~~ii~De~y~~~-----~~~~-l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~-l~~~~~~~~~ 249 (391)
T 3bwn_A 179 N--RPDDDEAKVIHDFAYYWP-----HYTP-ITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKK-MVEYIIVNSI 249 (391)
T ss_dssp -------CCCEEEEECTTCST-----TTSC-CCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHH-HHHHHHHHHS
T ss_pred H--HhhcCCCEEEEeCCCCCC-----CCCc-cccCCCCeEEEEechhhcCCCccceEEEEecCHHHHHH-HHHHhccccc
Confidence 4 2255 999999999731 1111 111224578888999998755 3368888755543332 2111111000
Q ss_pred cccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC---------hhhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCc
Q 041829 334 KASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG---------LENLQGYIRNHIQLAKHFEGLVAQDLRFEVVTPRIF 404 (486)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g---------~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~ 404 (486)
+...+....+..+++... .+.++++.++..++++++.+.|+++|++++..+...
T Consensus 250 -----------------~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~ 312 (391)
T 3bwn_A 250 -----------------GVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEA 312 (391)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCE
T ss_pred -----------------CCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCcc
Confidence 000011112223333210 346778888889999999999999888876532211
Q ss_pred ------------e-EEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeEC-CEeEEEEEecCCCCCHHHHHHHHH
Q 041829 405 ------------S-LVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLS-GKYILRFAVGAPLTEWRHVNAAWE 470 (486)
Q Consensus 405 ------------~-~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-~~~~lRi~~~~~~~t~~di~~~~~ 470 (486)
+ .+.+.+.. . ..+...+.+.|..+..+..+. +.+++|+++ . +++++++++++
T Consensus 313 ~~~f~~~~~~~~g~~~~~~~~~-~----------~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~-~--~~~e~i~~~~~ 378 (391)
T 3bwn_A 313 FCNYFGKSLESYPAFAWLGTKE-E----------TDLVSELRRHKVMSRAGERCGSDKKHVRVSM-L--SREDVFNVFLE 378 (391)
T ss_dssp EETTTTEEECCCCSEEEEEESS-S----------CCHHHHHHHTTEECEEGGGGTCCTTEEEEES-C--SCHHHHHHHHH
T ss_pred ccccccccCCCcceEEEecCCc-H----------HHHHHHHHHCCEEEccCCCCCCCCCEEEEEe-c--CCHHHHHHHHH
Confidence 1 34455532 1 123444555674443333332 246899999 3 38999999999
Q ss_pred HHHHHHHH
Q 041829 471 VMQDKASA 478 (486)
Q Consensus 471 ~l~~~~~~ 478 (486)
+|+++.++
T Consensus 379 ~L~~~~~~ 386 (391)
T 3bwn_A 379 RLANMKLI 386 (391)
T ss_dssp HHHSCC--
T ss_pred HHHHHHHh
Confidence 99877643
No 228
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.67 E-value=6.9e-16 Score=154.33 Aligned_cols=327 Identities=11% Similarity=0.028 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHhc-C-cCccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHH
Q 041829 89 VAGFLGEMLSAGL-N-IVGFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALK 166 (486)
Q Consensus 89 ~~~~~~~~l~~~~-n-~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~ 166 (486)
++..+.+... .+ + .....|....+..++.+++.+|+.+..+.+... +.-+.++|.||++|+..++.+..+..
T Consensus 48 ~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~---~~i~i~~t~G~~~al~~~~~~l~~~~-- 121 (405)
T 3k7y_A 48 IFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIED---KKICTIQCIGGTGAIFVLLEFLKMLN-- 121 (405)
T ss_dssp CCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTT---TCEEEEEEEHHHHHHHHHHHHHHTTT--
T ss_pred ccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccc---cceEEEEcCchHHHHHHHHHHHHhcC--
Confidence 3455555544 32 2 234567777788999999999986554432110 00025889999988877766543310
Q ss_pred HhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecC-Ccc
Q 041829 167 RVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVG-TTS 245 (486)
Q Consensus 167 ~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~-~t~ 245 (486)
+ +.|++++.++..+..+++..|. +++.+|+..++++.+|+++|++++++..+ ..+++++.+ +||
T Consensus 122 -------~-d~Vlv~~P~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~~~----~~~i~l~~~~~NP 186 (405)
T 3k7y_A 122 -------V-ETLYVTNPPYINHVNMIESRGF---NLKYINFFDYNLIDINYDLFLNDLRNIPN----GSSVILQISCYNP 186 (405)
T ss_dssp -------C-CEEEEESSCCHHHHHHHHTTTC---EEEEECCEETTTTEECHHHHHHHHHHSCS----SCEEEECCSSCTT
T ss_pred -------C-CEEEEeCCCCHhHHHHHHHcCC---eEEEEeccccccCCcCHHHHHHHHHhCCC----CeEEEEeCCCCCC
Confidence 5 7899999999999999999999 99999984333489999999999975311 235666665 799
Q ss_pred ccccC---ChHHHHHHHHHhCCEEEeeccccchhccC-c----cchhcccCCcCCC-ceeeecccccCC-CCcceEEEE-
Q 041829 246 STAVD---PLLALGNIAKSNGMWFHVDAAYAGSACIC-P----EYRQYIDGVEEAD-SFNMNAHKWFLT-NFDCSALWV- 314 (486)
Q Consensus 246 tG~id---~l~~I~~ia~~~g~~lhvD~A~g~~~~~~-~----~~~~~~~~~~~aD-s~~~~~hK~l~~-p~~~g~l~~- 314 (486)
||.+- .+++|+++|++|++++++|.+|..+.... + ..+... .. .-. .++.++.|.++. ..-+|++++
T Consensus 187 TG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~-~~-~~~~i~~~S~SK~~~l~GlRiG~~~~~ 264 (405)
T 3k7y_A 187 CSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFE-EK-NIAFSVCQSFSKNMSLYGERAGALHIV 264 (405)
T ss_dssp TCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHH-TT-TCCEEEEEECTTTSCCTTTTEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHH-hc-CCcEEEEeeCCccCCCccccceEEEEE
Confidence 99994 47788899999999999999998754311 0 011111 11 112 446678999984 456888764
Q ss_pred -eCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhC--------hhhHHHHHHHHHHHHHH
Q 041829 315 -KDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYG--------LENLQGYIRNHIQLAKH 385 (486)
Q Consensus 315 -r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g--------~~g~~~~~~~~~~~a~~ 385 (486)
.+++...+.... ...+... ..+ ....+...++...+. .+.++++.++..+++++
T Consensus 265 ~~~~~~~~~~~~~-l~~~~~~---------------~~~-~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~ 327 (405)
T 3k7y_A 265 CKNQEEKKIVFNN-LCFIVRK---------------FYS-SPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRIL 327 (405)
T ss_dssp CSSHHHHHHHHHH-HHHHHHT---------------TTS-SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHH-HHHHHhc---------------ccC-CCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444432211100 0000000 000 011222222222221 23345566678888999
Q ss_pred HHHHHh----cCC---CeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCC
Q 041829 386 FEGLVA----QDL---RFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAP 458 (486)
Q Consensus 386 l~~~l~----~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~ 458 (486)
+.+.|+ ++. ++++. +|..++++|.-.+ . ++.++| ++.++++.+. + |++++
T Consensus 328 l~~~L~~~~~~~g~~~~~~~~-~p~gg~f~~~~l~--------~----~~~~~L-~~~gV~v~p~---~----Ris~a-- 384 (405)
T 3k7y_A 328 FFNKLETYQKKYNLNYDWNVY-KKQRGLFSFVPLL--------A----KIAEHL-KTHHIYIINN---G----RINVS-- 384 (405)
T ss_dssp HHHHHHHHGGGGTCCCCGGGG-SSCCSSEEECGGG--------G----GGTTTT-TTTTEECCTT---S----EEEGG--
T ss_pred HHHHHHhhhhhcCCCCCCccc-cCCceEEEecCCC--------H----HHHHHH-HHCCEeecCC---C----eEEEe--
Confidence 999998 762 14543 5666666553111 1 234556 4444666552 1 99983
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 041829 459 LTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 459 ~~t~~di~~~~~~l~~~~~~ 478 (486)
..++++|+.++++|.++.++
T Consensus 385 ~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 385 GITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp GCCTTHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHHhh
Confidence 34778999999999988753
No 229
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.65 E-value=1.8e-14 Score=145.33 Aligned_cols=302 Identities=14% Similarity=0.098 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEecCCCchhHHHHHHH
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYASDQTHSALQKACQI 194 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~ 194 (486)
.+++.++.++++++++ +.+ ..++++|||+|+..++.+||... + ++.+|+.+...|.....+...
T Consensus 91 ~~~~~~l~~~l~~~~~-~~~-------~v~~~~~g~ea~~~al~~ar~~~-~-------~~~vi~~~~~yhg~~~~~~~~ 154 (424)
T 2e7u_A 91 SPLEVALAKKVKRAYP-FVD-------LVRFVNSGTEATMSALRLARGYT-G-------RPYIVKFRGNYHGHADGLLVE 154 (424)
T ss_dssp CHHHHHHHHHHHHHCT-TCC-------EEEEESSHHHHHHHHHHHHHHHH-C-------CCEEEEETTCCCCCCGGGSEE
T ss_pred CHHHHHHHHHHHHhCC-CCC-------EEEEeCCHHHHHHHHHHHHHHhh-C-------CCEEEEECCCcCCCcHHHHHh
Confidence 4566667777888885 332 48999999999999998876432 0 344454444445422222211
Q ss_pred h-------------CCCC---CCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----hHH
Q 041829 195 G-------------GIHP---QNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP----LLA 254 (486)
Q Consensus 195 ~-------------g~g~---~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~----l~~ 254 (486)
. |+.. .+++.+|. .|+++|++++++.. ..+.+|+++...+++|.+-| +++
T Consensus 155 ~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~ 224 (424)
T 2e7u_A 155 AGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREVLKRRG---EEIAAIIFEPVVGNAGVLVPTEDFLKA 224 (424)
T ss_dssp CCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCCHHHHHH
T ss_pred cCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHHHHhCC---CCEEEEEEeCCCCCCCCcCCCHHHHHH
Confidence 1 2100 13444442 38999999997531 12456666655556898877 999
Q ss_pred HHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCccccccc
Q 041829 255 LGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNK 334 (486)
Q Consensus 255 I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~ 334 (486)
|.++ ++||+++++|++|+++ .....+.....++ ..|.+ ++.|+++....+|+++.++ + +.+.+.......
T Consensus 225 l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~--s~sK~l~~G~~~G~~~~~~-~-~~~~~~~~~~~~--- 294 (424)
T 2e7u_A 225 LHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGL-KPDLV--TLGKILGGGLPAAAYAGRR-E-IMEKVAPLGPVY--- 294 (424)
T ss_dssp HHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTC-CCSEE--EECGGGGTTSSCEEEEECH-H-HHTTBTTTSSBC---
T ss_pred HHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCC-Ccchh--hhhhhhhCCcceEEEEEcH-H-HHhhhcccCCcc---
Confidence 9999 9999999999999865 3221111111122 35765 5569998766789888765 3 322222100000
Q ss_pred ccccCCccCCCCCccCCCCCCCcHHH---HHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCCCceEEE
Q 041829 335 ASQANMVVDYKDWQIPLGRRFRSLKL---WMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQD---LRFEVVTPRIFSLVC 408 (486)
Q Consensus 335 ~~~~~~~~~~~~~~~~~sr~~~~l~~---~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~---~~~~~~~~~~~~~v~ 408 (486)
...+-....+.. .++++.+.. .+++.++..++++++++.|+++ .++....++..+++.
T Consensus 295 --------------~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~ 358 (424)
T 2e7u_A 295 --------------QAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMIT 358 (424)
T ss_dssp --------------CCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEE
T ss_pred --------------cCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEE
Confidence 000111222333 334443322 1456777788888888888764 133211133445667
Q ss_pred EEecCCCCCc-c----cchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 409 FRLLPPHNDE-D----HGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 409 f~~~~~~~~~-~----~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
+.+....... . .......++.+.|.++| +.+.+... ..+|+ +...|++++++++++|+++
T Consensus 359 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~~~---~~~~~---~~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 359 VFFTEGPVVTFQDARRTDTELFKRFFHGLLDRG-IYWPPSNF---EAAFL---SVAHREEDVEKTLEALRKA 423 (424)
T ss_dssp EESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTT-EECCSSSS---SCEEC---CTTCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcchhhhcccCHHHHHHHHHHHHHCC-eEEeccCC---CceEe---eccCCHHHHHHHHHHHHHh
Confidence 7664311000 0 01233467888888877 55544321 23444 4577999999999999865
No 230
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.61 E-value=1.6e-13 Score=138.13 Aligned_cols=303 Identities=13% Similarity=0.049 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCe-EEEecCCCchhHHHHHHHh
Q 041829 117 LEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKL-VVYASDQTHSALQKACQIG 195 (486)
Q Consensus 117 le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~-~v~~s~~~H~s~~~a~~~~ 195 (486)
+|.++.+.+++++..-+ ...|++||||||..|+..||... ++. +|......|-.........
T Consensus 128 ~~~~lae~l~~~~p~~~--------~v~f~~SGsEA~e~AiklAr~~t---------gr~~ii~~~~~yHG~t~~~~~~~ 190 (454)
T 4ao9_A 128 LEGRLARLICERFPQIE--------QLRFTNSGTEANLMALTAALHFT---------GRRKIVVFSGGYHGGVLGFGARP 190 (454)
T ss_dssp SHHHHHHHHHHHSTTCS--------EEEEESSHHHHHHHHHHHHHHHH---------TCCEEEEETTCBCSTTCBBSSSB
T ss_pred HHHHHHHHHHHhCCCCC--------EEEEeCchHHHHHHHHHHHHhcc---------cCCeEEEEeCCcCCccccccccc
Confidence 44455566888885322 38999999999999999998753 333 3334444454322111000
Q ss_pred CCC--CCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----hHHHHHHHHHhCCEEEee
Q 041829 196 GIH--PQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP----LLALGNIAKSNGMWFHVD 269 (486)
Q Consensus 196 g~g--~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~----l~~I~~ia~~~g~~lhvD 269 (486)
+-. ......+|. -|.+++++.+++... .+.+|++.......|.+-| +++|.++|++||++|++|
T Consensus 191 ~~~~~~~~~~~~p~-------nd~~~l~~~l~~~~~---~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~D 260 (454)
T 4ao9_A 191 SPTTVPFDFLVLPY-------NDAQTARAQIERHGP---EIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFD 260 (454)
T ss_dssp CTTSCCSEEEEECT-------TCHHHHHHHHHHTGG---GEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEE
T ss_pred cCccCCCCcccCCC-------chHHHHHHHHhhcCC---ceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEE
Confidence 100 002223332 389999999976432 3567777776777888877 999999999999999999
Q ss_pred ccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCcc
Q 041829 270 AAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQI 349 (486)
Q Consensus 270 ~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 349 (486)
+.+.|- ....+.....|+ ..|.+++. |.++..++.|++..+.+ +.+.+......+... .|+
T Consensus 261 EV~tGR--~G~~~a~e~~gv-~PDi~t~g--K~lggG~Piga~~~~~e--i~~~~~~~~~~~~h~------------~T~ 321 (454)
T 4ao9_A 261 EVMTSR--LAPHGLANKLGI-RSDLTTLG--KYIGGGMSFGAFGGRAD--VMALFDPRTGPLAHS------------GTF 321 (454)
T ss_dssp CTTGGG--GSTTCHHHHHTC-CCSEEEEE--GGGGTTSSCEEEEECHH--HHGGGCTTTCSCCCC------------CTT
T ss_pred CCCcCC--CccccchhccCC-CCcEEEec--cccCCCCcceeeeeHHH--HHHHHhhccCCcccc------------CCC
Confidence 988651 111111111233 46888765 88877677888887753 223332211111000 011
Q ss_pred CCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcC----CC-eEEecCCCceEEEEEecCCCC-Cc---c-
Q 041829 350 PLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQD----LR-FEVVTPRIFSLVCFRLLPPHN-DE---D- 419 (486)
Q Consensus 350 ~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~----~~-~~~~~~~~~~~v~f~~~~~~~-~~---~- 419 (486)
.+.+....+..++|+.+-.+ +..++..++.++|++.|+++ +- .++-. ...++.+.+..... +. .
T Consensus 322 -~gnPla~AAala~L~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg--~G~m~gi~f~~~~~~~~~~~~~ 395 (454)
T 4ao9_A 322 -NNNVMTMAAGYAGLTKLFTP---EAAGALAERGEALRARLNALCANEGVAMQFTG--IGSLMNAHFVQGDVRSSEDLAA 395 (454)
T ss_dssp -TTCHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEE--ETTEEEEESCCSCCCSGGGGTT
T ss_pred -CCCHHHHHHHHHHHHHHhcc---ChhHHHHHHHHHHHHHHHHHHhhCCCCEEEee--eceEEEEEEecCCCCCHHHHHh
Confidence 11112223344555555433 34556666777777776542 21 12211 12344554432111 00 0
Q ss_pred cchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 041829 420 HGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 420 ~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
........+...|.++| +++.+. + .+ .+ +...|++|||+++++|++++.+..
T Consensus 396 ~d~~~~~~~~~~ll~~G-v~~~p~---~--~~--~~-s~~~T~~dId~~l~al~~~l~~~~ 447 (454)
T 4ao9_A 396 VDGRLRQLLFFHLLNED-IYSSPR---G--FV--VL-SLPLTDADIDRYVAAIGSFIGGHG 447 (454)
T ss_dssp CCHHHHHHHHHHHHHTT-EECCTT---C--EE--EC-CTTCCHHHHHHHHHHHHHHHHHSG
T ss_pred hhHHHHHHHHHHHHHCC-EEEcCC---C--CE--EE-eCCCCHHHHHHHHHHHHHHHHhcc
Confidence 11345566777888888 555442 1 22 23 445799999999999999887643
No 231
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.58 E-value=1.4e-14 Score=146.31 Aligned_cols=304 Identities=10% Similarity=-0.014 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhcC-cC--ccccccCh-h---hHHHHHHHHHHHHHHcCC--CCCCcCCCCCCeEEcCchhHHHHHHHHHH
Q 041829 90 AGFLGEMLSAGLN-IV--GFSWITSP-A---ATELEMIVLDWLAKLLKL--PEDFLSSGQGGGVIQGTASEAVLVVLLAA 160 (486)
Q Consensus 90 ~~~~~~~l~~~~n-~~--~~~~~~~~-~---~~~le~~~~~~la~l~g~--~~~~~~~~~~~~~~t~ggt~a~~~al~~a 160 (486)
+..+.+.+...+. .. ...|.... + ..++++.+.+|+.+..+. +++ ..++|+|+++++..++.+.
T Consensus 71 ~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~-------~iv~t~G~~~al~~~~~~l 143 (427)
T 2hox_A 71 EYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDR-------YIVFGVGVTQLIHGLVISL 143 (427)
T ss_dssp HHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTC-------EEEEESHHHHHHHHHHHHH
T ss_pred CHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCC-------EEEEeCCHHHHHHHHHHHH
Confidence 3444555554442 21 12254444 4 688999988888876543 332 5899999999988877654
Q ss_pred --------HHHHHHHhCccCCCCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCC
Q 041829 161 --------RDKALKRVGKNSLEKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGL 232 (486)
Q Consensus 161 --------~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~ 232 (486)
.+ +++.|+++...|..+...++..|. +++. +.+|+++|++++++.
T Consensus 144 ~~~~~~~~~~-----------~Gd~Vlv~~P~y~~~~~~~~~~g~---~~~~--------~~~d~~~l~~~~~~~----- 196 (427)
T 2hox_A 144 SPNMTATPDA-----------PESKVVAHAPFYPVFREQTKYFDK---KGYV--------WAGNAANYVNVSNPE----- 196 (427)
T ss_dssp SCCTTTCTTS-----------CCEEEEECSSCCHHHHHHHHHSCB---TTEE--------EEEEGGGGTTCSCGG-----
T ss_pred hhccccccCC-----------CCCEEEEeCCCcccHHHHHHHcCC---eeee--------ecCCHHHHHHhhcCC-----
Confidence 22 678899999999999999999998 7653 357788888777543
Q ss_pred ccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceE
Q 041829 233 IPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSA 311 (486)
Q Consensus 233 ~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~ 311 (486)
+.+|+++.++|+||.+-+ + +++ +++.+.|.++.... ...... ....+.+..+++|.++.| .-+|+
T Consensus 197 -~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~---~s~~~~---~~~~~i~~~S~SK~~g~~G~RiG~ 262 (427)
T 2hox_A 197 -QYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPH---YTPIKY---KADEDILLFTMSKFTGHSGSRFGW 262 (427)
T ss_dssp -GEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTT---TSCCCS---CBCCSEEEEEHHHHTSCGGGCCEE
T ss_pred -ceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCC---CCcccc---CCCceEEEEeChhcCCCCCceEEE
Confidence 457888899999999988 4 333 56788887663210 011111 135688999999998755 34799
Q ss_pred EEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--C-----------hhhHHHHHHH
Q 041829 312 LWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--G-----------LENLQGYIRN 378 (486)
Q Consensus 312 l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--g-----------~~g~~~~~~~ 378 (486)
++++++..+....... .+.. . ....+..+++...+ + .+.+++..++
T Consensus 263 ~~~~~~~l~~~l~~~~-~~~~------------------~--~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~ 321 (427)
T 2hox_A 263 ALIKDESVYNNLLNYM-TKNT------------------E--GTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKK 321 (427)
T ss_dssp EEECCHHHHHHHHHHH-HHHT------------------S--SCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHH
T ss_pred EEECCHHHHHHHHHHH-HhcC------------------C--CCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHH
Confidence 8887655443221111 1100 0 01122222222222 1 2344566778
Q ss_pred HHHHHHHHHHHHhcCCCeEE--ec-----------CCC-ceEEEEEecCCCCCcccchHHHHHHHHHHH-ccCcEEEEe-
Q 041829 379 HIQLAKHFEGLVAQDLRFEV--VT-----------PRI-FSLVCFRLLPPHNDEDHGNKLNHKLLDDIN-STGKIFISH- 442 (486)
Q Consensus 379 ~~~~a~~l~~~l~~~~~~~~--~~-----------~~~-~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~- 442 (486)
..++.+++.+.|++++++++ +. .|. ...+.+++... . .++...+. +.| +.+.+
T Consensus 322 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~------~----~~~~~~ll~~~g-I~v~pg 390 (427)
T 2hox_A 322 LRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE------E----DKDCYQTFQNGR-INTQNG 390 (427)
T ss_dssp HHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG------G----GCSHHHHHHHTT-EECEEG
T ss_pred HHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc------H----HHHHHHHHHHCC-EEEcCC
Confidence 88899999999999888876 21 122 23344555321 1 23455554 456 44444
Q ss_pred eeEC-CEeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q 041829 443 TVLS-GKYILRFAVGAPLTEWRHVNAAWEVMQDKA 476 (486)
Q Consensus 443 ~~~~-~~~~lRi~~~~~~~t~~di~~~~~~l~~~~ 476 (486)
..+. +..++|+++. ++++++++++++|.++.
T Consensus 391 ~~f~~~~~~~Ris~~---~~~e~l~~~l~~l~~~~ 422 (427)
T 2hox_A 391 VGFEASSRYVRLSLI---KTQDDFDQLMYYLKDMV 422 (427)
T ss_dssp GGGTSCTTEEEEECS---SCHHHHHHHHHHHHHHH
T ss_pred CccCCCCCEEEEEec---CCHHHHHHHHHHHHHHH
Confidence 3332 3568999993 38899999999998775
No 232
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.53 E-value=4.8e-11 Score=120.46 Aligned_cols=318 Identities=16% Similarity=0.075 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEe-cCCCchhHHHHHHHh
Q 041829 117 LEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYA-SDQTHSALQKACQIG 195 (486)
Q Consensus 117 le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~-s~~~H~s~~~a~~~~ 195 (486)
.+.++.+.|++++..+.. ...+|++||||||..|+..||... ++..|+. ....|-...-+....
T Consensus 108 ~~~~lae~L~~~~p~~~~------~~v~f~~sGsEA~e~AlklAr~~t---------~r~~ii~~~~~yHG~t~~als~t 172 (456)
T 4atq_A 108 GYVAVTEQLNRLTPGDHA------KRTVLFNSGAEAVENAVKVARLAT---------GRDAVVAFDHAYHGRTNLTMALT 172 (456)
T ss_dssp HHHHHHHHHHHHSSCSSC------EEEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEETTCCCCSSHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCC------cEEEEeCChHHHHHHHHHHHhhhh---------cCCeEEEEecccCCccccccccc
Confidence 344455668888853321 136889999999999999998753 3344444 444565544444333
Q ss_pred CCC----------CCCeEEEeCCCC----CCCccCHHHHHHHHHHHH--hCCCccEEEEEecCCccccccCC----hHHH
Q 041829 196 GIH----------PQNFRVLKTDSS----TNYSLSPDSLAEAISRDL--TIGLIPFFLCATVGTTSSTAVDP----LLAL 255 (486)
Q Consensus 196 g~g----------~~~v~~v~~~~~----~~~~id~~~L~~~i~~~~--~~g~~p~~vv~~~~~t~tG~id~----l~~I 255 (486)
+-. ...+..+|.... .....+.+.+++.++... ..+..+.+|++.-.....|.+.| +++|
T Consensus 173 ~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~l 252 (456)
T 4atq_A 173 AKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPAL 252 (456)
T ss_dssp CCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred cCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHH
Confidence 221 124666765321 001234556655554322 12345677777766666787754 8999
Q ss_pred HHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCCcccccccc
Q 041829 256 GNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTNPEFLKNKA 335 (486)
Q Consensus 256 ~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~~~yl~~~~ 335 (486)
.++|++||+.+++|+.+.|+.-...-+....-++ ..|.+++. |.++..++.|.++.+++- ...+. +....
T Consensus 253 r~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv-~PDivt~g--K~lggg~P~~av~~~~~i--~~~~~--~~~~~--- 322 (456)
T 4atq_A 253 SEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGV-VPDIITMA--KGIAGGLPLSAITGRADL--LDAVH--PGGLG--- 322 (456)
T ss_dssp HHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC-CCSEEEEC--GGGGTTSSCEEEEEEHHH--HTTSC--TTSSC---
T ss_pred HHHHhhcCCceEecccccccCCccccccccccCC-CCchhhhh--hcccCcCCceeeEecHHH--Hhccc--ccCCC---
Confidence 9999999999999999887543322222222234 47998886 777776778888887642 11111 10000
Q ss_pred cccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhc----CCC--eEEecCC--CceEE
Q 041829 336 SQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQ----DLR--FEVVTPR--IFSLV 407 (486)
Q Consensus 336 ~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~----~~~--~~~~~~~--~~~~v 407 (486)
.| -.+.+....++.++++.+-.+++ .++..++.++|.+.|++ .+. -.++.+. ...++
T Consensus 323 -----------~T-f~gnpla~aaala~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~ 387 (456)
T 4atq_A 323 -----------GT-YGGNPVACAAALAAIDTMEQHDL---NGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAML 387 (456)
T ss_dssp -----------CS-SSSCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEE
T ss_pred -----------CC-CCCChHHHHhhHHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEE
Confidence 01 11212222344455555544443 44555666666666654 221 1112111 12245
Q ss_pred EEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 041829 408 CFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASA 478 (486)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 478 (486)
.+.+..+.. .....+...++...+.++|.+ +.+....+ .++|+.. ....|+++||++++.|+++++.
T Consensus 388 giel~~~~~-~~~~~~~~~~v~~~~~~~Gvl-~~~~g~~~-~~irl~P-pL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 388 AIELVQPGS-KEPNAELTKAVAAACLKEGVI-ILTCGTYG-NVIRLLP-PLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp EEEEBCTTS-CCBCHHHHHHHHHHHHHTTEE-CEEECTTS-CEEEECC-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCC-CCcCHHHHHHHHHHHHHCCCE-EEecCCCC-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHh
Confidence 555542211 111345667888899999944 33322222 4799987 5677999999999999988753
No 233
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.52 E-value=3.4e-13 Score=134.91 Aligned_cols=331 Identities=10% Similarity=0.018 Sum_probs=192.2
Q ss_pred HHHHHHHHhcCcC-ccccccChhhHHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCc
Q 041829 92 FLGEMLSAGLNIV-GFSWITSPAATELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGK 170 (486)
Q Consensus 92 ~~~~~l~~~~n~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 170 (486)
.+.+........+ ...|....+..+|.+.+.+++ +|-.... +....+-|.|||.|...++........
T Consensus 66 ~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~---~g~~~~~---~~~~~~qt~ggtga~~~a~~~l~~~~~----- 134 (420)
T 4h51_A 66 VVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKII---YGNTVEL---ENLVAVQTLSGTGAVSLGAKLLTRVFD----- 134 (420)
T ss_dssp HHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHH---HC---CG---GGEEEEEEEHHHHHHHHHHHHHTTTSC-----
T ss_pred HHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHh---cCCCccc---cccceeeecCchHHHHHHHHHHHHhcC-----
Confidence 3444443333333 235777778899999876554 3422110 011345688899887777654332111
Q ss_pred cCCCCeEEEecCCCchhHHHHHHHhCCCCCCeE-EEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 171 NSLEKLVVYASDQTHSALQKACQIGGIHPQNFR-VLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 171 ~~~~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~-~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
.+++.|++++.+..+....++..|. +.+ ..+....+++.+|.+.+.+.++...+ ..++++.+.++||||..
T Consensus 135 --~pgd~V~ip~P~w~~y~~i~~~aG~---~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~~vll~~~p~NPtG~~ 206 (420)
T 4h51_A 135 --AETTPIYLSDPTWPNHYGVVKAAGW---KNICTYAYYDPKTVSLNFEGMKKDILAAPD---GSVFILHQCAHNPTGVD 206 (420)
T ss_dssp --TTTSCEEEEESCCTHHHHHHHHTTC---CCEEEEECEEGGGTEECHHHHHHHHHHSCS---SCEEEEESSSCTTTCCC
T ss_pred --CCCCEEEEecCCchhHHHHHHHcCC---eEEEeeccccccccCCCHHHHHHHHhccCC---CcEEEEeCCCCCCCCCC
Confidence 1677899999999999999999998 744 44443334578999999998876432 34677778899999999
Q ss_pred ---CChHHHHHHHHHhCCEEEeeccccchhccCccchh-ccc-CCcCC--CceeeecccccCCC-CcceEEEEeCchH--
Q 041829 250 ---DPLLALGNIAKSNGMWFHVDAAYAGSACICPEYRQ-YID-GVEEA--DSFNMNAHKWFLTN-FDCSALWVKDRNT-- 319 (486)
Q Consensus 250 ---d~l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~-~~~-~~~~a--Ds~~~~~hK~l~~p-~~~g~l~~r~~~~-- 319 (486)
+.+++|+++|++++++++.|.+|.++......... ... ..+.. -.++.++.|.++.+ .-+|++.+..+..
T Consensus 207 ~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~ 286 (420)
T 4h51_A 207 PSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTK 286 (420)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHH
T ss_pred CCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHH
Confidence 55789999999999999999999876532111110 000 00111 23456788977654 3488877654421
Q ss_pred HHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHh--------ChhhHHHHHHHHHHHHHHHHHHHh
Q 041829 320 LIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLY--------GLENLQGYIRNHIQLAKHFEGLVA 391 (486)
Q Consensus 320 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~--------g~~g~~~~~~~~~~~a~~l~~~l~ 391 (486)
..+.... ...+... + .+ .........+...+ -.+-++.+.++..++++.|.+.|+
T Consensus 287 ~~~~~~~-l~~~~r~-------------~--~s-~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~ 349 (420)
T 4h51_A 287 RADVKSV-MDSLIRE-------------E--YT-CPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELL 349 (420)
T ss_dssp HHHHHHH-HHHHHHT-------------T--TS-SCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhhhc-------------c--cC-cchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111100 0000000 0 00 01112222222222 133456677788888999999998
Q ss_pred cCC--C-eEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHH
Q 041829 392 QDL--R-FEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAA 468 (486)
Q Consensus 392 ~~~--~-~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~ 468 (486)
+.. + |..+ .++.++++| .+-+ .+..+.|.+.| +++.+. | ||++++ .+++.|+++
T Consensus 350 ~~g~~~~~~~i-~~q~GmF~~--~gls----------~e~v~~L~e~~-Vy~~~~---g----Ris~Ag--l~~~ni~~~ 406 (420)
T 4h51_A 350 RLQTPGSWEHV-INQIGMFSF--LGLS----------KAQCEYCQNHN-IFITVS---G----RANMAG--LTHETALML 406 (420)
T ss_dssp HTTCSSCCTHH-HHCCSSEEE--CCCC----------HHHHHHHHHTT-EECCTT---C----EEEGGG--CCHHHHHHH
T ss_pred HhCCCCCCCee-cCCCceEEe--cCcC----------HHHHHHHHhCC-EEEcCC---C----EEEecc--CCHHHHHHH
Confidence 762 1 2222 233355554 2211 12234555566 554432 2 999843 488999999
Q ss_pred HHHHHHHHHHHHH
Q 041829 469 WEVMQDKASALLA 481 (486)
Q Consensus 469 ~~~l~~~~~~l~~ 481 (486)
+++|.++.+++.+
T Consensus 407 a~aI~~vvr~i~r 419 (420)
T 4h51_A 407 AQTINDAVRNVNR 419 (420)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988765
No 234
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.48 E-value=8.4e-12 Score=126.51 Aligned_cols=331 Identities=12% Similarity=0.074 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEe-cCCCchhHHHHHH
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYA-SDQTHSALQKACQ 193 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~-s~~~H~s~~~a~~ 193 (486)
++.+.++.+.|+++...+.+ ..+|++||||||..|+..||.....+ +.. ++..|+. ....|-...-++.
T Consensus 110 ~~~~~~lAe~L~~~~p~~~~-------~v~f~~sGsEA~e~AiKlAr~~~~~~-g~~--~r~~ii~~~~~yHG~t~~a~s 179 (473)
T 4e3q_A 110 SDQTVMLSEKLVEVSPFDSG-------RVFYTNSGSEANDTMVKMLWFLHAAE-GKP--QKRKILTRWNAYHGVTAVSAS 179 (473)
T ss_dssp EHHHHHHHHHHHHHSSCSSC-------EEEEESSHHHHHHHHHHHHHHHHHHT-TCT--TCCEEEEETTCCCCSSHHHHH
T ss_pred CHHHHHHHHHHHhhCCCCcc-------EEEEeCchHHHHHHHHHHHHHHHHhc-CCC--CcceEEEeeceECCCcccccc
Confidence 34445566668888865432 48999999999999999998653322 111 2333443 4445655444444
Q ss_pred Hh--------CCCCCCeEEEeCCCC----CCCcc-------CHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC---
Q 041829 194 IG--------GIHPQNFRVLKTDSS----TNYSL-------SPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP--- 251 (486)
Q Consensus 194 ~~--------g~g~~~v~~v~~~~~----~~~~i-------d~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~--- 251 (486)
.. +.....+..++.... ..... ..++|++.|.+. ....+.+|++.-.....|.+-|
T Consensus 180 ~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAavi~EPiqg~gG~~~p~~~ 257 (473)
T 4e3q_A 180 MTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQRE--GADTIAGFFAEPVMGAGGVIPPAKG 257 (473)
T ss_dssp HSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHH--CGGGEEEEEECSSBSTTTSBCCCTT
T ss_pred ccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhh--CCCceEEEEeCCccCCCCceeCCHH
Confidence 33 222234555554310 00011 123455555432 1233566777766666777744
Q ss_pred -hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCceeeecccccCCC-CcceEEEEeCchHHHHHhcCCcc
Q 041829 252 -LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTN-FDCSALWVKDRNTLIQSLSTNPE 329 (486)
Q Consensus 252 -l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~~~ 329 (486)
+++|.++|++||+.|++|+.+.|+.-...-+.....++ ..|.+++. |.++.. ++.|+++++++- .+.+.....
T Consensus 258 fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv-~PDi~t~~--K~l~gG~~Pl~av~~~~~i--~~~~~~~~~ 332 (473)
T 4e3q_A 258 YFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDF-TPDAIISS--KNLTAGFFPMGAVILGPEL--SKRLETAIE 332 (473)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTC-CCSEEEEC--GGGGTTSSCCEEEEECHHH--HHHHHHHHH
T ss_pred HHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCC-CCChHHhc--ccccCCCCCcccccccHHH--HHHhccccc
Confidence 89999999999999999999887643222222212233 47888875 877655 678888887642 222211100
Q ss_pred cccccccccCCccCCCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCCCceE
Q 041829 330 FLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQD---LRFEVVTPRIFSL 406 (486)
Q Consensus 330 yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~---~~~~~~~~~~~~~ 406 (486)
..... ....|. .+.+.....+.++++.+-.++ ++++..++.++|.+.|+++ |.+.-+. ....+
T Consensus 333 ~~~~~---------~hg~T~-~Gnpla~Aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~v~~vR-G~Gl~ 398 (473)
T 4e3q_A 333 AIEEF---------PHGFTA-SGHPVGCAIALKAIDVVMNEG---LAENVRRLAPRFEERLKHIAERPNIGEYR-GIGFM 398 (473)
T ss_dssp HHSCC---------CCCCTT-TTCHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHTTSTTEEEEE-EETTE
T ss_pred ccccc---------ccCCCC-CCCcchhhhhhhhhhhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCeeEEe-ecceE
Confidence 00000 000000 111112223344455554444 4455666778888777653 4432111 11124
Q ss_pred EEEEecCCCCC---cccchHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 041829 407 VCFRLLPPHND---EDHGNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALLAR 482 (486)
Q Consensus 407 v~f~~~~~~~~---~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~~~ 482 (486)
+.+.+...... .........++...+.++|. ++.+. | ..+|++. ....|++|||+++++|+++++++.++
T Consensus 399 ~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gl-l~~~~---g-~~i~l~P-PL~it~~eid~~~~~l~~al~~v~ae 471 (473)
T 4e3q_A 399 WALEAVKDKASKTPFDGNLSVSERIANTCTDLGL-ICRPL---G-QSVVLCP-PFILTEAQMDEMFDKLEKALDKVFAE 471 (473)
T ss_dssp EEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTE-ECEEE---T-TEEEECC-CTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCccccccccccHHHHHHHHHHHHHCCc-EEEec---C-CEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45554321110 01122345678888888884 44332 2 3788876 56789999999999999999988764
No 235
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.21 E-value=3.8e-15 Score=150.87 Aligned_cols=304 Identities=13% Similarity=0.025 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEEEec-CCCchhHHHHH-
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVVYAS-DQTHSALQKAC- 192 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v~~s-~~~H~s~~~a~- 192 (486)
.+.+.++.+.|+++++ ..+ ..++++|||+||..|+..+|... ++..|++. ...|-+...+.
T Consensus 139 ~~~~~~Lae~L~~~~p-~~~-------~v~~~nSGseA~~~Aik~ar~~t---------gr~~ii~~~~~yHG~~~~~~s 201 (465)
T 2yky_A 139 TENEALFAEAVCDRFP-SID-------LVRFTNSGTEANLMALATATAIT---------GRKTVLAFDGGYHGGLLNFAS 201 (465)
Confidence 3444555555888884 222 37999999999999999887531 33344444 44454444333
Q ss_pred --HHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC----hHHHHHHHHHhCCEE
Q 041829 193 --QIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP----LLALGNIAKSNGMWF 266 (486)
Q Consensus 193 --~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~----l~~I~~ia~~~g~~l 266 (486)
...|+.. .++.+| .-|+++|++++++. +..+.+|++....+++|.+-| +++|.++|++||+++
T Consensus 202 g~~~~g~~~-~~~~~~-------~~d~~~l~~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~ll 270 (465)
T 2yky_A 202 GHAPTNAPY-HVVLGV-------YNDVEGTADLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALL 270 (465)
Confidence 1122211 122222 13889999999742 112456776665667898766 999999999999999
Q ss_pred EeeccccchhccCccchhcccCCcCCCceeeecccccCCCCcceEEEEeCchHHHHHhcCC--cc-cccccccccCCccC
Q 041829 267 HVDAAYAGSACICPEYRQYIDGVEEADSFNMNAHKWFLTNFDCSALWVKDRNTLIQSLSTN--PE-FLKNKASQANMVVD 343 (486)
Q Consensus 267 hvD~A~g~~~~~~~~~~~~~~~~~~aDs~~~~~hK~l~~p~~~g~l~~r~~~~~~~~~~~~--~~-yl~~~~~~~~~~~~ 343 (486)
++|++|. + ...+.+.....++ ..|.++ ..|+++.....|+++.++. +.+.+... .+ +...
T Consensus 271 I~DEv~~-~-r~g~~~a~~~~gv-~pDi~t--~sK~lg~G~piG~v~~~~~--i~~~l~~~~~g~~~~~~---------- 333 (465)
T 2yky_A 271 IFDEVMT-S-RLSGGGAQEMLGI-SADLTT--LGKYIGGGMSFGAFGGRRD--LMERFDPARDGAFAHAG---------- 333 (465)
Confidence 9999998 4 2111110000112 357665 4599987667888776653 22222110 00 1100
Q ss_pred CCCCccCCCCCCCcHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCC-CeEEe--cCCCceEEEEEecCCCC-C--
Q 041829 344 YKDWQIPLGRRFRSLKLWMVLRLYGLENLQGYIRNHIQLAKHFEGLVAQDL-RFEVV--TPRIFSLVCFRLLPPHN-D-- 417 (486)
Q Consensus 344 ~~~~~~~~sr~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~l~~~~-~~~~~--~~~~~~~v~f~~~~~~~-~-- 417 (486)
++ .+.+....++.++++.+..+ .+.++..++.+++++.|+++. +..+. ......++.+.+..... +
T Consensus 334 ----T~-~~npla~aAa~aaL~~l~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~ 405 (465)
T 2yky_A 334 ----TF-NNNILTMSAGHAALTQIYTR---QAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAG 405 (465)
Confidence 00 11122223344455544332 456677778888888887641 12221 13344566665542000 0
Q ss_pred c-cc-chHHHHHHHHHHHccCcEEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 041829 418 E-DH-GNKLNHKLLDDINSTGKIFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 418 ~-~~-~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
. .. ..+...++.+.|.++| +++.+..+. . + +...|++||++++++|+++++++.
T Consensus 406 ~~~~~d~~~~~~~~~~ll~~G-V~v~p~~~~---~--~---s~~~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 406 DVRAADQQLKELFFFHMLRKG-IYLAPRGMY---A--L---SLEIADAGRDAFAEALADFIGEQR 461 (465)
Confidence 0 00 0123456778888888 444443322 1 3 446799999999999999887664
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.33 E-value=5e-11 Score=128.87 Aligned_cols=327 Identities=12% Similarity=0.039 Sum_probs=169.2
Q ss_pred HHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccC------CCCe-EEEecCCCchhHHHHHH
Q 041829 121 VLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNS------LEKL-VVYASDQTHSALQKACQ 193 (486)
Q Consensus 121 ~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~------~~~~-~v~~s~~~H~s~~~a~~ 193 (486)
+.+.|+++++-+.- ...+|++|||+||..|+.+|+..+....+..+ .++. +|......|-+..-++.
T Consensus 429 Lae~L~~~~p~~~l------~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals 502 (831)
T 4a0g_A 429 CAELLLDGVGKGWA------SRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAME 502 (831)
T ss_dssp HHHHHHHTTTTTTC------CEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHH
T ss_pred HHHHHHHhCCCCCC------CEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeee
Confidence 34448888863210 13899999999999999999543322222110 0133 44445556877777777
Q ss_pred HhCCCC-------------------------CCeEEEeCCCC------CC-CccC------------------HHHHHHH
Q 041829 194 IGGIHP-------------------------QNFRVLKTDSS------TN-YSLS------------------PDSLAEA 223 (486)
Q Consensus 194 ~~g~g~-------------------------~~v~~v~~~~~------~~-~~id------------------~~~L~~~ 223 (486)
..|... ..+..++.... +. -.-| .++|++.
T Consensus 503 ~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 582 (831)
T 4a0g_A 503 AQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKH 582 (831)
T ss_dssp TSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHH
T ss_pred ccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHH
Confidence 665310 01112232210 00 0001 2567776
Q ss_pred HHHHH--hCCCccEEEEEecC-CccccccCC----hHHHHHHHHHhCCEEEeeccccchhccCccchhcccCCcCCCcee
Q 041829 224 ISRDL--TIGLIPFFLCATVG-TTSSTAVDP----LLALGNIAKSNGMWFHVDAAYAGSACICPEYRQYIDGVEEADSFN 296 (486)
Q Consensus 224 i~~~~--~~g~~p~~vv~~~~-~t~tG~id~----l~~I~~ia~~~g~~lhvD~A~g~~~~~~~~~~~~~~~~~~aDs~~ 296 (486)
|++.. .....+.+|++.-. ....|.+-+ +++|.++|++||+++++|+++.|+......+.....++ ..|.+|
T Consensus 583 l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv-~PDiit 661 (831)
T 4a0g_A 583 LQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGC-KPDIAC 661 (831)
T ss_dssp C---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSS-CCSEEE
T ss_pred HHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCC-CCcEEE
Confidence 65421 12334556666553 456677654 99999999999999999999877543222221111233 468877
Q ss_pred eecccccCCC-CcceEEEEeCchHHHHHhcCCcccccccccccCCccCCCCCccCCCCCCCcHH---HHHHHHHhChhhH
Q 041829 297 MNAHKWFLTN-FDCSALWVKDRNTLIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLK---LWMVLRLYGLENL 372 (486)
Q Consensus 297 ~~~hK~l~~p-~~~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~sr~~~~l~---~~~~l~~~g~~g~ 372 (486)
++ |.+++. .+.|+++++++ +.+.+...... ..+....+.....+. +.++++.+-.+.+
T Consensus 662 ls--K~L~gG~~Plgav~~~~~--i~~~~~~~~~~--------------~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l 723 (831)
T 4a0g_A 662 FA--KLLTGGMVPLAVTLATDA--VFDSFSGDSKL--------------KALLHGHSYSAHAMGCATAAKAIQWFKDPET 723 (831)
T ss_dssp EC--GGGGTTSSCCEEEEECHH--HHHTTCSSCGG--------------GSCCCCCTTTTCHHHHHHHHHHHHHHHCTTT
T ss_pred Ee--cccccCccCcEEEEECHH--HHHHHhccccc--------------ccceeecCCcccHHHHHHHHHHHHHHHhhHH
Confidence 54 888654 35788887653 33333221100 000001111223333 3344444322222
Q ss_pred HHHHHHH-HHH----HHHHHHHHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECC
Q 041829 373 QGYIRNH-IQL----AKHFEGLVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSG 447 (486)
Q Consensus 373 ~~~~~~~-~~~----a~~l~~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~ 447 (486)
.+.+.+. ..+ .+.+.+.++++|.+.-+. ....++.+.+...............++.+.+.++| +++.+. +
T Consensus 724 ~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~G-v~v~p~---g 798 (831)
T 4a0g_A 724 NHNITSQGKTLRELWDEELVQQISSHSAVQRVV-VIGTLFALELKADASNSGYASLYAKSLLIMLREDG-IFTRPL---G 798 (831)
T ss_dssp CTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEE-EETTEEEEEEC---------CHHHHHHHHHHHHTT-EECCCB---T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEe-ecccEEEEEEecCccccccchHHHHHHHHHHHHCC-cEEEec---C
Confidence 2111110 111 223455666777664432 22335555553211000001234567888888888 444432 2
Q ss_pred EeEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 041829 448 KYILRFAVGAPLTEWRHVNAAWEVMQDKASAL 479 (486)
Q Consensus 448 ~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l 479 (486)
..+|++. ...+|++||++++++|.++.+++
T Consensus 799 -~~lrl~p-p~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 799 -NVIYLMC-GPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp -TEEEEEC-CTTCCHHHHHHHHHHHHHHHTTT
T ss_pred -CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 5899998 77889999999999999886543
No 237
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=78.52 E-value=13 Score=33.64 Aligned_cols=68 Identities=15% Similarity=0.074 Sum_probs=43.1
Q ss_pred CeEEEecCCCchhHHHHHH---HhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC
Q 041829 175 KLVVYASDQTHSALQKACQ---IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD 250 (486)
Q Consensus 175 ~~~v~~s~~~H~s~~~a~~---~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id 250 (486)
+..|++.........+.++ ..|. ++..+.+| .-|.+++++.+++..++..++-++|-++|....+.+.
T Consensus 33 Ga~Vvi~~~~~~~~~~~~~~l~~~g~---~~~~~~~D-----v~~~~~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~ 103 (255)
T 4g81_D 33 GARVILNDIRATLLAESVDTLTRKGY---DAHGVAFD-----VTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMV 103 (255)
T ss_dssp TCEEEECCSCHHHHHHHHHHHHHTTC---CEEECCCC-----TTCHHHHHHHHHHHHHTTCCCCEEEECCCCCCCCCGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCC---cEEEEEee-----CCCHHHHHHHHHHHHHHCCCCcEEEECCCCCCCCChh
Confidence 4444444333333333333 3455 78888877 4588999999988776655566778888876666554
No 238
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=69.90 E-value=38 Score=29.81 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=48.9
Q ss_pred CCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChH
Q 041829 174 EKLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLL 253 (486)
Q Consensus 174 ~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~ 253 (486)
++..++.....-+.+...+.++|+ ++.....+ +.+++++.+++..++|.. +|+...
T Consensus 107 ~kIavVg~~~~~~~~~~i~~ll~~---~i~~~~~~-------~~ee~~~~i~~l~~~G~~--vVVG~~------------ 162 (225)
T 2pju_A 107 SSIGVVTYQETIPALVAFQKTFNL---RLDQRSYI-------TEEDARGQINELKANGTE--AVVGAG------------ 162 (225)
T ss_dssp SCEEEEEESSCCHHHHHHHHHHTC---CEEEEEES-------SHHHHHHHHHHHHHTTCC--EEEESH------------
T ss_pred CcEEEEeCchhhhHHHHHHHHhCC---ceEEEEeC-------CHHHHHHHHHHHHHCCCC--EEECCH------------
Confidence 455666666667778888999999 88877754 677888889888888854 333321
Q ss_pred HHHHHHHHhCCE
Q 041829 254 ALGNIAKSNGMW 265 (486)
Q Consensus 254 ~I~~ia~~~g~~ 265 (486)
-..++|+++|+.
T Consensus 163 ~~~~~A~~~Gl~ 174 (225)
T 2pju_A 163 LITDLAEEAGMT 174 (225)
T ss_dssp HHHHHHHHTTSE
T ss_pred HHHHHHHHcCCc
Confidence 137889999987
No 239
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=69.85 E-value=19 Score=32.87 Aligned_cols=66 Identities=15% Similarity=0.008 Sum_probs=43.5
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP 251 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~ 251 (486)
+++++. .-....+.++-+|- ++..+.+| .-|.+++++.+++..++-.++-++|-++|....+.+.+
T Consensus 56 V~i~~r-~~~~l~~~~~~~g~---~~~~~~~D-----v~~~~~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~ 121 (273)
T 4fgs_A 56 VFITGR-RKDVLDAAIAEIGG---GAVGIQAD-----SANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGE 121 (273)
T ss_dssp EEEEES-CHHHHHHHHHHHCT---TCEEEECC-----TTCHHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCTTS
T ss_pred EEEEEC-CHHHHHHHHHHcCC---CeEEEEec-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhh
Confidence 444443 33456667777776 78888887 45888888888776544334556777888766666644
No 240
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=66.45 E-value=29 Score=29.77 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=42.8
Q ss_pred CeEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHH
Q 041829 175 KLVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLA 254 (486)
Q Consensus 175 ~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~ 254 (486)
+..++.....-..+...+.++|+ ++.....+ +.+++++.+++..++|.. +|+... -
T Consensus 96 kIavvg~~~~~~~~~~~~~ll~~---~i~~~~~~-------~~~e~~~~i~~l~~~G~~--vvVG~~------------~ 151 (196)
T 2q5c_A 96 ELALIAYKHSIVDKHEIEAMLGV---KIKEFLFS-------SEDEITTLISKVKTENIK--IVVSGK------------T 151 (196)
T ss_dssp EEEEEEESSCSSCHHHHHHHHTC---EEEEEEEC-------SGGGHHHHHHHHHHTTCC--EEEECH------------H
T ss_pred cEEEEeCcchhhHHHHHHHHhCC---ceEEEEeC-------CHHHHHHHHHHHHHCCCe--EEECCH------------H
Confidence 44555555556677788888888 77777665 344566777777777744 233211 1
Q ss_pred HHHHHHHhCCE
Q 041829 255 LGNIAKSNGMW 265 (486)
Q Consensus 255 I~~ia~~~g~~ 265 (486)
..++|+++|+.
T Consensus 152 ~~~~A~~~Gl~ 162 (196)
T 2q5c_A 152 VTDEAIKQGLY 162 (196)
T ss_dssp HHHHHHHTTCE
T ss_pred HHHHHHHcCCc
Confidence 37788888876
No 241
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=62.15 E-value=15 Score=31.66 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEE
Q 041829 216 SPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFH 267 (486)
Q Consensus 216 d~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lh 267 (486)
...+=|+.++=.+-.|..|..|++..-.+..|..-..+++.++|++||+.++
T Consensus 142 R~GHTEAavdLarLAGl~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~ii 193 (204)
T 1tks_A 142 RRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKII 193 (204)
T ss_dssp CCCHHHHHHHHHHHTTSCSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEE
T ss_pred CCCcHHHHHHHHHHcCCCceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEE
Confidence 3444566666666689999999888775778999999999999999999875
No 242
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=59.41 E-value=47 Score=29.78 Aligned_cols=65 Identities=12% Similarity=-0.031 Sum_probs=37.3
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD 250 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id 250 (486)
++++.. ......+.++.+|. ++..+.+| .-|.+.+++.+++..+....+-+++-++|....+.+.
T Consensus 54 V~~~~r-~~~~~~~~~~~~~~---~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~ 118 (266)
T 3grp_A 54 VGLHGT-REDKLKEIAADLGK---DVFVFSAN-----LSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFV 118 (266)
T ss_dssp EEEEES-CHHHHHHHHHHHCS---SEEEEECC-----TTSHHHHHHHHHHHHHHHTSCCEEEECCCCC-----C
T ss_pred EEEEeC-CHHHHHHHHHHhCC---ceEEEEee-----cCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcc
Confidence 344433 33445555666676 88888887 4478888888776544322355677777766555443
No 243
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=59.33 E-value=28 Score=30.47 Aligned_cols=71 Identities=7% Similarity=0.019 Sum_probs=52.0
Q ss_pred hhHHHHHHHh-CCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc--CChHHHHHHHHHh
Q 041829 186 SALQKACQIG-GIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV--DPLLALGNIAKSN 262 (486)
Q Consensus 186 ~s~~~a~~~~-g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i--d~l~~I~~ia~~~ 262 (486)
.++..++.++ .+|...+.+.|.. +.-..|+|++.-+.+.++|. .+ -|||-| |++++|.++|.+.
T Consensus 145 V~vetAiaml~dmG~~SvKffPm~----Gl~~l~E~~avAka~a~~g~-----~l----EPTGGIdl~N~~~I~~i~l~a 211 (249)
T 3m0z_A 145 VPLETAIALLKDMGGSSIKYFPMG----GLKHRAEFEAVAKACAAHDF-----WL----EPTGGIDLENYSEILKIALDA 211 (249)
T ss_dssp EEHHHHHHHHHHTTCCEEEECCCT----TTTTHHHHHHHHHHHHHTTC-----EE----EEBSSCCTTTHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHcCCCeeeEeecC----CcccHHHHHHHHHHHHHcCc-----eE----CCCCCccHhhHHHHHHHHHHc
Confidence 4566666654 4565678888875 36688999988888888773 22 277887 6899999999999
Q ss_pred CCEEEee
Q 041829 263 GMWFHVD 269 (486)
Q Consensus 263 g~~lhvD 269 (486)
|+..++=
T Consensus 212 Gv~~viP 218 (249)
T 3m0z_A 212 GVSKIIP 218 (249)
T ss_dssp TCSCBCC
T ss_pred CCCeecc
Confidence 8776543
No 244
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=53.53 E-value=32 Score=29.74 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhCCCccEEEEEecC-CccccccCChHHHHHHHHHhCCEEE
Q 041829 216 SPDSLAEAISRDLTIGLIPFFLCATVG-TTSSTAVDPLLALGNIAKSNGMWFH 267 (486)
Q Consensus 216 d~~~L~~~i~~~~~~g~~p~~vv~~~~-~t~tG~id~l~~I~~ia~~~g~~lh 267 (486)
...+=|.+++=.+-.|..|..|++... .+..|..-..+++.++|++||+.++
T Consensus 141 R~GhTEaavdLarlAGl~Pa~vicEiv~~~~dG~mar~~~l~~fA~~h~l~~i 193 (206)
T 3mio_A 141 RPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALI 193 (206)
T ss_dssp CCCHHHHHHHHHHHTTSCSBEEEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEE
T ss_pred CCChHHHHHHHHHHcCCCceEEEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEE
Confidence 345567777767778999998888772 5577999999999999999999875
No 245
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=53.20 E-value=59 Score=29.32 Aligned_cols=64 Identities=16% Similarity=0.039 Sum_probs=39.5
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++++. ......+.+..++. ++..+++| .-|.+.+++.+++..+.-..+-+++-++|....+.+
T Consensus 54 V~~~~r-~~~~~~~~~~~~~~---~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~ 117 (277)
T 4dqx_A 54 VVVADV-NEDAAVRVANEIGS---KAFGVRVD-----VSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNV 117 (277)
T ss_dssp EEEEES-SHHHHHHHHHHHCT---TEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCT
T ss_pred EEEEeC-CHHHHHHHHHHhCC---ceEEEEec-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCc
Confidence 444443 33445555555666 78888887 458888888887654432235577778876655554
No 246
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=52.77 E-value=50 Score=29.13 Aligned_cols=65 Identities=17% Similarity=0.067 Sum_probs=39.3
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
.|++.........+.+..+|. ++..+.+| .-|.+.+++.+++..+.-..+-+++-++|....+.+
T Consensus 32 ~V~~~~r~~~~~~~~~~~~~~---~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 96 (247)
T 3rwb_A 32 TVIVSDINAEGAKAAAASIGK---KARAIAAD-----ISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAW 96 (247)
T ss_dssp EEEEECSCHHHHHHHHHHHCT---TEEECCCC-----TTCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCG
T ss_pred EEEEEeCCHHHHHHHHHHhCC---ceEEEEcC-----CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCc
Confidence 344333333445555566666 78888877 447888888877654332234567777776655544
No 247
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=52.58 E-value=16 Score=33.96 Aligned_cols=63 Identities=13% Similarity=-0.021 Sum_probs=44.5
Q ss_pred EeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEee
Q 041829 205 LKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHVD 269 (486)
Q Consensus 205 v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhvD 269 (486)
-|.+++ +.+|.+.+++.++...++|-.-+++..+.|...+=..+.-.++.+.+.+. .+.+++=
T Consensus 18 TPf~~d--g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaG 83 (309)
T 3fkr_A 18 TTFADT--GDLDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVT 83 (309)
T ss_dssp CCBCTT--SSBCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEE
T ss_pred CCCCcC--CCcCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEe
Confidence 355543 59999999999999888887666666666666666667777788777664 3555443
No 248
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=52.37 E-value=18 Score=33.53 Aligned_cols=57 Identities=14% Similarity=0.073 Sum_probs=38.7
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
++.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 30 dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpvia 89 (304)
T 3l21_A 30 DGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIA 89 (304)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 458999999999998888876555555555555555556666777776654 456655
No 249
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=52.13 E-value=12 Score=34.90 Aligned_cols=57 Identities=11% Similarity=0.157 Sum_probs=38.9
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
++.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 26 dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpVia 85 (303)
T 2wkj_A 26 QQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIA 85 (303)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 469999999999998888886555555555555544555666777766653 366655
No 250
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=52.05 E-value=66 Score=28.54 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=29.6
Q ss_pred CCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 200 QNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 200 ~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
.++..+++| --|.+.+++.+++..++...+-+++-+++....+.+
T Consensus 73 ~~~~~~~~D-----l~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~ 117 (266)
T 3o38_A 73 GRVEAVVCD-----VTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPV 117 (266)
T ss_dssp SCEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred CceEEEEeC-----CCCHHHHHHHHHHHHHHhCCCcEEEECCCcCCCCCc
Confidence 378888887 347888888877654432235577777776555544
No 251
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=51.98 E-value=75 Score=24.06 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=46.9
Q ss_pred CCeEEEecCCCchh--HHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC
Q 041829 174 EKLVVYASDQTHSA--LQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP 251 (486)
Q Consensus 174 ~~~~v~~s~~~H~s--~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~ 251 (486)
++.+||....+.+| +......+|+ ....++++.. -|.+.+++.+.+.......|.+.+ +....|..|+
T Consensus 17 ~~v~vy~~~~Cp~C~~ak~~L~~~~i---~~~~~dvd~~----~~~~~~~~~l~~~~g~~tvP~vfi---~g~~igG~d~ 86 (114)
T 3h8q_A 17 SRVVIFSKSYCPHSTRVKELFSSLGV---ECNVLELDQV----DDGARVQEVLSEITNQKTVPNIFV---NKVHVGGCDQ 86 (114)
T ss_dssp CSEEEEECTTCHHHHHHHHHHHHTTC---CCEEEETTTS----TTHHHHHHHHHHHHSCCSSCEEEE---TTEEEESHHH
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHcCC---CcEEEEecCC----CChHHHHHHHHHHhCCCccCEEEE---CCEEEeCHHH
Confidence 67788877777666 4455666788 8888888742 266777777766555555675443 3345666666
Q ss_pred hHHHH
Q 041829 252 LLALG 256 (486)
Q Consensus 252 l~~I~ 256 (486)
+.++.
T Consensus 87 l~~l~ 91 (114)
T 3h8q_A 87 TFQAY 91 (114)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 252
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=50.95 E-value=59 Score=29.35 Aligned_cols=64 Identities=14% Similarity=0.011 Sum_probs=38.9
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++++. ........+..++. ++..+.+| .-|.+.+++.+++..+.-..+-+++-++|....+.+
T Consensus 56 V~~~~r-~~~~~~~~~~~~~~---~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~ 119 (277)
T 3gvc_A 56 VLCADI-DGDAADAAATKIGC---GAAACRVD-----VSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASL 119 (277)
T ss_dssp EEEEES-SHHHHHHHHHHHCS---SCEEEECC-----TTCHHHHHHHHHHHHHHHSSCCEEEECCCCCCCBCT
T ss_pred EEEEeC-CHHHHHHHHHHcCC---cceEEEec-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCh
Confidence 444443 33445555556666 77888887 448888888877654432235567777776655544
No 253
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=50.37 E-value=71 Score=28.28 Aligned_cols=64 Identities=16% Similarity=0.035 Sum_probs=39.8
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++++. ......+.+..++- ++..+.+| .-|.+.+++.+++..++-..+-+++-++|....+.+
T Consensus 35 V~~~~r-~~~~~~~~~~~~~~---~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~ 98 (259)
T 4e6p_A 35 VAIADI-DIERARQAAAEIGP---AAYAVQMD-----VTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPI 98 (259)
T ss_dssp EEEEES-CHHHHHHHHHHHCT---TEEEEECC-----TTCHHHHHHHHHHHHHHSSSCCEEEECCCCCCCBCG
T ss_pred EEEEeC-CHHHHHHHHHHhCC---CceEEEee-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCc
Confidence 444443 33445555555665 77888887 458888888887665443345677777776555443
No 254
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=50.21 E-value=20 Score=33.48 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=41.7
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh--CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN--GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~--g~~lhv 268 (486)
++.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 23 dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpVia 81 (313)
T 3dz1_A 23 DGKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIV 81 (313)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCcCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 469999999999999888886655555555655555556667777777665 466665
No 255
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=49.47 E-value=22 Score=32.70 Aligned_cols=57 Identities=11% Similarity=0.186 Sum_probs=39.3
Q ss_pred CCccCHHHHHHHHHHHHh-CCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLT-IGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~-~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
++.+|.+.+++.++...+ .|-.-+++..|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 18 dg~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 78 (293)
T 1f6k_A 18 DGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIA 78 (293)
T ss_dssp TSCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 469999999999998888 786655555555555555556666777776653 355553
No 256
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=49.23 E-value=1.1e+02 Score=26.63 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=33.6
Q ss_pred HhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 194 IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 194 ~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
..|. ++..+.+| --|.+.+++.+++..+....+-+++-+++....+.+
T Consensus 51 ~~~~---~~~~~~~D-----~~~~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~ 98 (247)
T 3lyl_A 51 EKGF---KARGLVLN-----ISDIESIQNFFAEIKAENLAIDILVNNAGITRDNLM 98 (247)
T ss_dssp HTTC---CEEEEECC-----TTCHHHHHHHHHHHHHTTCCCSEEEECCCCCCCCCG
T ss_pred hcCC---ceEEEEec-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCch
Confidence 3455 78888887 448888998888766554456678888876655544
No 257
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=48.82 E-value=21 Score=31.51 Aligned_cols=70 Identities=6% Similarity=0.053 Sum_probs=50.2
Q ss_pred hHHHHHHHh-CCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc--CChHHHHHHHHHhC
Q 041829 187 ALQKACQIG-GIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV--DPLLALGNIAKSNG 263 (486)
Q Consensus 187 s~~~a~~~~-g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i--d~l~~I~~ia~~~g 263 (486)
++..++.++ .+|...+.+.|.. +.-..|+|++.-+.+.++|. .+ -|||-| |++++|.++|.+.|
T Consensus 169 ~vetAiaml~dmG~~SvKffPM~----Gl~~leEl~avAkAca~~g~-----~l----EPTGGIdl~Nf~~I~~i~l~aG 235 (275)
T 3m6y_A 169 PIKTAIALVRDMGGNSLKYFPMK----GLAHEEEYRAVAKACAEEGF-----AL----EPTGGIDKENFETIVRIALEAN 235 (275)
T ss_dssp EHHHHHHHHHHHTCCEEEECCCT----TTTTHHHHHHHHHHHHHHTC-----EE----EEBSSCCTTTHHHHHHHHHHTT
T ss_pred eHHHHHHHHHHcCCCeeeEeecC----CcccHHHHHHHHHHHHHcCc-----eE----CCCCCccHhHHHHHHHHHHHcC
Confidence 466666554 3455577888875 36688999888888877773 22 277887 68999999999998
Q ss_pred CEEEee
Q 041829 264 MWFHVD 269 (486)
Q Consensus 264 ~~lhvD 269 (486)
+..++=
T Consensus 236 v~~viP 241 (275)
T 3m6y_A 236 VEQVIP 241 (275)
T ss_dssp CSCBCC
T ss_pred CCeecc
Confidence 765443
No 258
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=48.53 E-value=24 Score=32.76 Aligned_cols=57 Identities=16% Similarity=0.125 Sum_probs=37.4
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
++.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 31 dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 90 (304)
T 3cpr_A 31 SGDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIA 90 (304)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEe
Confidence 469999999999998888875544444454554444445566677766653 355553
No 259
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=48.52 E-value=1.1e+02 Score=27.31 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=30.1
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 76 ~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~ 119 (271)
T 4ibo_A 76 DAEAVAFD-----VTSESEIIEAFARLDEQGIDVDILVNNAGIQFRKPM 119 (271)
T ss_dssp CEEECCCC-----TTCHHHHHHHHHHHHHHTCCCCEEEECCCCCCCCCG
T ss_pred ceEEEEcC-----CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCc
Confidence 77788776 458888888887765544445677777776554443
No 260
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=47.10 E-value=23 Score=32.95 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=42.0
Q ss_pred eCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 206 KTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 206 ~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
|.++ ++.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 25 Pf~~--dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pvia 88 (307)
T 3s5o_A 25 PFTA--TAEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLA 88 (307)
T ss_dssp CBCT--TSCBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEE
T ss_pred cCCC--CCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEE
Confidence 4444 358999999999998888776555555555555555556677788777765 355554
No 261
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=46.52 E-value=1.3e+02 Score=26.66 Aligned_cols=97 Identities=13% Similarity=0.059 Sum_probs=54.6
Q ss_pred eEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCeEE-E---ecC---------CCchhHHHHHHHhCCCCCCeEEEeCCC
Q 041829 143 GVIQGTASEAVLVVLLAARDKALKRVGKNSLEKLVV-Y---ASD---------QTHSALQKACQIGGIHPQNFRVLKTDS 209 (486)
Q Consensus 143 ~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~~v-~---~s~---------~~H~s~~~a~~~~g~g~~~v~~v~~~~ 209 (486)
.+..|||-.+.+.+..+..+ +-.++ + .+. ..+..+.+.|+.+|+ .+..+++..
T Consensus 8 vvl~SGGkDSs~al~~l~~~-----------G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGI---pl~~v~~~g 73 (237)
T 3rjz_A 8 AVLYSGGKDSNYALYWAIKN-----------RFSVKFLVTMVSENEESYMYHTINANLTDLQARALGI---PLVKGFTQG 73 (237)
T ss_dssp EEECCSSHHHHHHHHHHHHT-----------TCEEEEEEEEECC--------CCSSSHHHHHHHHHTC---CEEEEEC--
T ss_pred EEEecCcHHHHHHHHHHHHc-----------CCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCC---CEEEEECCC
Confidence 67889999888766554322 11121 1 111 223457788999999 888888763
Q ss_pred CCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC---ChHHHHHHHHHhCCEEE
Q 041829 210 STNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD---PLLALGNIAKSNGMWFH 267 (486)
Q Consensus 210 ~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id---~l~~I~~ia~~~g~~lh 267 (486)
.. .--.++|.+++++. | .-.| .+|.++ --..+-.+|.+.|+...
T Consensus 74 ~~--~~e~e~l~~~l~~~---~--i~~v-------v~Gdi~s~yqr~r~e~vc~~~gl~~~ 120 (237)
T 3rjz_A 74 EK--EKEVEDLKRVLSGL---K--IQGI-------VAGALASKYQRKRIEKVAKELGLEVY 120 (237)
T ss_dssp ------CHHHHHHHHTTS---C--CSEE-------ECC---CCSHHHHHHHHHHHTTCEEE
T ss_pred Cc--hHHHHHHHHHHHhc---C--CcEE-------EECCcchHHHHHHHHHHHHHcCCEEE
Confidence 21 23467777777542 1 1122 356663 24677888999988764
No 262
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=46.14 E-value=59 Score=28.82 Aligned_cols=64 Identities=13% Similarity=0.041 Sum_probs=38.5
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++++. ......+..+.+|. ++..+++| .-|.+.+++.+++..+.-..+-+++-++|....+.+
T Consensus 35 V~~~~r-~~~~~~~~~~~~~~---~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 98 (255)
T 4eso_A 35 VLLTGR-NESNIARIREEFGP---RVHALRSD-----IADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPF 98 (255)
T ss_dssp EEEEES-CHHHHHHHHHHHGG---GEEEEECC-----TTCHHHHHHHHHHHHHHHSSEEEEEECCCCCCCBCG
T ss_pred EEEEeC-CHHHHHHHHHHhCC---cceEEEcc-----CCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCh
Confidence 444443 33445555555665 78888887 447888887776654332235567777776555444
No 263
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=45.72 E-value=10 Score=35.20 Aligned_cols=57 Identities=12% Similarity=0.055 Sum_probs=36.6
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
++.+|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 27 dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpVia 86 (301)
T 1xky_A 27 NGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIA 86 (301)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEe
Confidence 469999999999998888875544444444444444445566666666553 345543
No 264
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=45.60 E-value=45 Score=29.05 Aligned_cols=51 Identities=10% Similarity=0.007 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEE
Q 041829 216 SPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFH 267 (486)
Q Consensus 216 d~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lh 267 (486)
...+=|.+++=.+-.|..|..|++..- +..|..-..+++.++|++||+.++
T Consensus 150 R~GhTEAavdLarLAGl~Pa~vicEi~-~~dG~mar~~~l~~fA~~h~l~~i 200 (217)
T 1g57_A 150 RGGHTEATIDLMTLAGFKPAGVLCELT-NDDGTMARAPECIEFANKHNMALV 200 (217)
T ss_dssp CCSHHHHHHHHHHHTTSCSCEEEEEBB-CTTSSBCCHHHHHHHHHHTTCEEE
T ss_pred CCCcHHHHHHHHHHcCCCceEEEEEEe-CCCCCccCHHHHHHHHHHcCCCEE
Confidence 344456667666678889988887765 566888999999999999999874
No 265
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=45.15 E-value=28 Score=33.16 Aligned_cols=57 Identities=9% Similarity=0.039 Sum_probs=38.4
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
++.+|.+.+++.++...++|-.-+++..+.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 74 dg~ID~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpVia 133 (360)
T 4dpp_A 74 DGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIG 133 (360)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 469999999999998888886655555555555555555666666666553 356655
No 266
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=44.86 E-value=23 Score=33.27 Aligned_cols=57 Identities=7% Similarity=-0.095 Sum_probs=36.4
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
++.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 49 dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpVia 108 (332)
T 2r8w_A 49 AGRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMA 108 (332)
T ss_dssp TCCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 358999999999888777775544444444444444445566666666553 355554
No 267
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=44.51 E-value=20 Score=33.17 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=38.0
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
++.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 22 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 81 (297)
T 3flu_A 22 DGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIA 81 (297)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 458999999999988888876555555555555555556666777766553 355554
No 268
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=43.68 E-value=91 Score=27.83 Aligned_cols=44 Identities=11% Similarity=-0.057 Sum_probs=28.8
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 54 ~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~ 97 (264)
T 3tfo_A 54 TALAQVLD-----VTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPL 97 (264)
T ss_dssp EEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred cEEEEEcC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 77778877 447888888877654432235567777776655544
No 269
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=43.62 E-value=1.7e+02 Score=25.89 Aligned_cols=64 Identities=14% Similarity=0.005 Sum_probs=38.6
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++++.. ......+....++- ++..+.+| --|.+.+++.+++..+....+-+|+-++|....+.+
T Consensus 32 V~~~~r-~~~~~~~~~~~~~~---~~~~~~~D-----v~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~ 95 (281)
T 3m1a_A 32 VIGTAR-RTEALDDLVAAYPD---RAEAISLD-----VTDGERIDVVAADVLARYGRVDVLVNNAGRTQVGAF 95 (281)
T ss_dssp EEEEES-SGGGGHHHHHHCTT---TEEEEECC-----TTCHHHHHHHHHHHHHHHSCCSEEEECCCCEEECCT
T ss_pred EEEEeC-CHHHHHHHHHhccC---CceEEEee-----CCCHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCCh
Confidence 444443 33344455555555 78888877 447888888877654332235577888876665554
No 270
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=43.50 E-value=21 Score=32.88 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=36.0
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN 262 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~ 262 (486)
++.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+.+.
T Consensus 18 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 68 (294)
T 3b4u_A 18 DGTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAA 68 (294)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 469999999999998888886555555555555544556666777777664
No 271
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=43.50 E-value=17 Score=33.90 Aligned_cols=57 Identities=12% Similarity=0.031 Sum_probs=40.3
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
++.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 39 dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVia 98 (315)
T 3na8_A 39 DGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIV 98 (315)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 469999999999999888886655555555555555556667777777664 355554
No 272
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=43.33 E-value=1.3e+02 Score=26.89 Aligned_cols=69 Identities=10% Similarity=0.029 Sum_probs=39.0
Q ss_pred eEEEecCCCchhHHHHHHHh-CCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 176 LVVYASDQTHSALQKACQIG-GIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 176 ~~v~~s~~~H~s~~~a~~~~-g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
.++++....-....+.+..+ .....++..+++| .-|.+.+++.+++..+.-..+-+++-++|....+.+
T Consensus 51 ~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~ 120 (281)
T 3v2h_A 51 NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPAD-----MTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKI 120 (281)
T ss_dssp EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCC-----TTCHHHHHHHHHHHHHHTSSCSEEEECCCCCCCCCG
T ss_pred EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCC-----CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCc
Confidence 34555543333333333322 2222278888877 448888888887655443345567777776655544
No 273
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=43.31 E-value=55 Score=28.60 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=35.7
Q ss_pred eEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 176 LVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 176 ~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
.+++++.. -....+....++- ++..+.+| --|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 29 ~V~~~~r~-~~~~~~~~~~~~~---~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~ 93 (235)
T 3l6e_A 29 QVSMMGRR-YQRLQQQELLLGN---AVIGIVAD-----LAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPV 93 (235)
T ss_dssp EEEEEESC-HHHHHHHHHHHGG---GEEEEECC-----TTSHHHHHHHHHHHHHHHCSCSEEEEECCCC-----
T ss_pred EEEEEECC-HHHHHHHHHHhcC---CceEEECC-----CCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCCCCh
Confidence 34444443 2344455555554 67788877 347888888877654432235567777776555443
No 274
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=42.95 E-value=1e+02 Score=27.15 Aligned_cols=43 Identities=9% Similarity=0.005 Sum_probs=30.0
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+++| --|.+.+++.+++..+. ..+-+++-++|....+.+
T Consensus 57 ~~~~~~~D-----v~~~~~v~~~~~~~~~~-g~id~lv~nAg~~~~~~~ 99 (252)
T 3h7a_A 57 RIVARSLD-----ARNEDEVTAFLNAADAH-APLEVTIFNVGANVNFPI 99 (252)
T ss_dssp EEEEEECC-----TTCHHHHHHHHHHHHHH-SCEEEEEECCCCCCCCCG
T ss_pred eEEEEECc-----CCCHHHHHHHHHHHHhh-CCceEEEECCCcCCCCCc
Confidence 78888887 44888888888776554 346677777776555544
No 275
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=42.77 E-value=18 Score=33.80 Aligned_cols=57 Identities=9% Similarity=0.094 Sum_probs=39.2
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
++.+|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 37 dg~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVia 96 (315)
T 3si9_A 37 NGAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVA 96 (315)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 469999999999998888886655555555555555556666777776654 355554
No 276
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=42.47 E-value=1.3e+02 Score=26.44 Aligned_cols=67 Identities=13% Similarity=-0.009 Sum_probs=36.4
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++++.. .....+....+.-...++..+.+| .-|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 33 V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 99 (257)
T 3imf_A 33 VVITGRT-KEKLEEAKLEIEQFPGQILTVQMD-----VRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPA 99 (257)
T ss_dssp EEEEESC-HHHHHHHHHHHCCSTTCEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred EEEEeCC-HHHHHHHHHHHHhcCCcEEEEEcc-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCh
Confidence 4444433 233444444332211278888887 447888888877654432234567777775544443
No 277
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=42.43 E-value=28 Score=24.85 Aligned_cols=48 Identities=8% Similarity=0.111 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHccCc-EEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 423 KLNHKLLDDINSTGK-IFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 423 ~~~~~l~~~l~~~g~-~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
+...++.++|...|. ..+. .+..+.|+-+ .++.++++.+.+.+.|++.
T Consensus 21 ~~A~~l~~~L~~~G~~a~i~----~~~~~yRV~v-Gpf~s~~~A~~~~~~L~~~ 69 (81)
T 1uta_A 21 EQAETVRAQLAFEGFDSKIT----TNNGWNRVVI-GPVKGKENADSTLNRLKMA 69 (81)
T ss_dssp HHHHHHHHHHHHHTCCEEEE----ECSSSEEEEE-SSCBTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCeEEE----eCCcEEEEEE-CCcCCHHHHHHHHHHHHHc
Confidence 344677788877773 2222 3445788888 8899999999999998763
No 278
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=42.26 E-value=51 Score=28.87 Aligned_cols=51 Identities=6% Similarity=0.010 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEE
Q 041829 216 SPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFH 267 (486)
Q Consensus 216 d~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lh 267 (486)
..-+=|..++=..-.|..|..|++..-+ ..|..-..+++.++|++||+.++
T Consensus 161 R~GHTEaaVdLarlAGl~Pa~VicEi~~-ddG~mar~~~l~~fA~~h~l~~i 211 (227)
T 1snn_A 161 RQGHTEMTVALAELANLVPITTICEMMG-DDGNAMSKNETKRYAEKHNLIYL 211 (227)
T ss_dssp CCSHHHHHHHHHHHTTSCSEEEEEEEBC-TTSSBCCHHHHHHHHHHHTCCEE
T ss_pred CCCchHHHHHHHHHcCCCceEEEEEEeC-CCCCcCCHHHHHHHHHHcCCcEE
Confidence 4445666676666789999888887764 56999999999999999999875
No 279
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=42.09 E-value=1.5e+02 Score=25.93 Aligned_cols=64 Identities=13% Similarity=-0.017 Sum_probs=36.5
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+++++.. -....+....+|. ++..+..| --|.+.+++.+++..+.-..+-+++-++|....+.+
T Consensus 33 V~~~~r~-~~~~~~~~~~~~~---~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~ 96 (253)
T 1hxh_A 33 VAFSDIN-EAAGQQLAAELGE---RSMFVRHD-----VSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDM 96 (253)
T ss_dssp EEEECSC-HHHHHHHHHHHCT---TEEEECCC-----TTCHHHHHHHHHHHHHHHCSCCEEEECCCCCCCBCT
T ss_pred EEEEeCC-HHHHHHHHHHcCC---ceEEEEcc-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 4444433 2334444444555 77888876 448888888877654332234567777776544433
No 280
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=41.93 E-value=1.7e+02 Score=26.51 Aligned_cols=69 Identities=19% Similarity=0.126 Sum_probs=38.8
Q ss_pred eEEEecCCCchhHHHHHHHh-CCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC
Q 041829 176 LVVYASDQTHSALQKACQIG-GIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD 250 (486)
Q Consensus 176 ~~v~~s~~~H~s~~~a~~~~-g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id 250 (486)
.+++++... ....+.+..+ ..+..++..+.+| --|.+.+++.+++..++-..+-+++-++|....+.++
T Consensus 67 ~V~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~ 136 (293)
T 3rih_A 67 NVAVAARSP-RELSSVTAELGELGAGNVIGVRLD-----VSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLD 136 (293)
T ss_dssp EEEEEESSG-GGGHHHHHHHTTSSSSCEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTT
T ss_pred EEEEEECCH-HHHHHHHHHHHhhCCCcEEEEEEe-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcc
Confidence 345554433 2333433333 2232378888887 4588888888776544322345677777766555543
No 281
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=41.91 E-value=84 Score=24.56 Aligned_cols=72 Identities=15% Similarity=0.068 Sum_probs=40.6
Q ss_pred CCeEEEecCCCchhHH---HHHHHhC---CCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccc
Q 041829 174 EKLVVYASDQTHSALQ---KACQIGG---IHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSST 247 (486)
Q Consensus 174 ~~~~v~~s~~~H~s~~---~a~~~~g---~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG 247 (486)
.+.++|....+.+|.. ......| + .+..++++.+. +-..+.+.+.+.......|.++ .-| ...|
T Consensus 37 ~~Vvvy~~~~Cp~C~~a~k~~L~~~~~~~i---~~~~vdvd~~~----~~~~~~~~L~~~~g~~tVP~vf--i~g-~~ig 106 (129)
T 3ctg_A 37 KEVFVAAKTYCPYCKATLSTLFQELNVPKS---KALVLELDEMS----NGSEIQDALEEISGQKTVPNVY--ING-KHIG 106 (129)
T ss_dssp SSEEEEECTTCHHHHHHHHHHHTTSCCCGG---GEEEEEGGGST----THHHHHHHHHHHHSCCSSCEEE--ETT-EEEE
T ss_pred CCEEEEECCCCCchHHHHHHHHHhcCccCC---CcEEEEccccC----CHHHHHHHHHHHhCCCCCCEEE--ECC-EEEc
Confidence 5678887777776643 3333445 5 77888887432 3345556666655444567532 223 3455
Q ss_pred ccCChHHH
Q 041829 248 AVDPLLAL 255 (486)
Q Consensus 248 ~id~l~~I 255 (486)
..|++.++
T Consensus 107 G~d~l~~l 114 (129)
T 3ctg_A 107 GNSDLETL 114 (129)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHH
Confidence 55665543
No 282
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=41.57 E-value=19 Score=33.13 Aligned_cols=57 Identities=11% Similarity=0.048 Sum_probs=38.0
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
++.+|.+.+++.++...+.|-.-+++..+.|..++=..+.-.++.+.+.+. .+.+++
T Consensus 16 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvia 75 (291)
T 3tak_A 16 DGGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIA 75 (291)
T ss_dssp TSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CCCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 459999999999988887776555555555555554556666777776654 355554
No 283
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=41.29 E-value=18 Score=33.19 Aligned_cols=51 Identities=18% Similarity=0.098 Sum_probs=35.2
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN 262 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~ 262 (486)
++.+|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+.
T Consensus 14 dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~ 64 (288)
T 2nuw_A 14 QGKVNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDV 64 (288)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTT
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 459999999999998888886554444444544444445566777776664
No 284
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=40.85 E-value=20 Score=33.02 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=33.4
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN 262 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~ 262 (486)
++.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+.+.
T Consensus 16 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 66 (292)
T 2ojp_A 16 KGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDL 66 (292)
T ss_dssp TSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHH
Confidence 458999999999988777775544444444444444445566666666553
No 285
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=40.74 E-value=20 Score=33.43 Aligned_cols=57 Identities=18% Similarity=0.129 Sum_probs=38.5
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
++.+|.+.+++.++...+.|-.-+++..+.|..++=..+.-.++.+.+.+. .+.+++
T Consensus 38 dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVia 97 (314)
T 3qze_A 38 QGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIA 97 (314)
T ss_dssp TSCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 459999999999988877776555555555555555556666777766554 355554
No 286
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=40.74 E-value=22 Score=32.71 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=35.4
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN 262 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~ 262 (486)
++.+|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+.
T Consensus 14 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~ 64 (293)
T 1w3i_A 14 DNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDV 64 (293)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 459999999999998888875544444444444444445666777777664
No 287
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=40.60 E-value=83 Score=27.63 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=37.3
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++++.. ......+..+.++- +...+.+| .-|.+.+++.+++..++-..+-+++-++|....+.+
T Consensus 36 V~~~~r-~~~~~~~~~~~~~~---~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~ 99 (248)
T 3op4_A 36 VIGTAT-SESGAQAISDYLGD---NGKGMALN-----VTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLL 99 (248)
T ss_dssp EEEEES-SHHHHHHHHHHHGG---GEEEEECC-----TTCHHHHHHHHHHHHHHHCCCSEEEECCCCCCCCCG
T ss_pred EEEEeC-CHHHHHHHHHHhcc---cceEEEEe-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCh
Confidence 444433 33344555555555 66777776 448888888887654432234567777776555544
No 288
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=40.60 E-value=1.9e+02 Score=25.32 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=36.5
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcc
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTS 245 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~ 245 (486)
+++++. ......+.+..++. ++..+.+| .-|.+.+++.+++..+....+-+++-+++...
T Consensus 36 V~~~~r-~~~~~~~~~~~~~~---~~~~~~~D-----~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~ 95 (261)
T 3n74_A 36 VVIVDR-DKAGAERVAGEIGD---AALAVAAD-----ISKEADVDAAVEAALSKFGKVDILVNNAGIGH 95 (261)
T ss_dssp EEEEES-CHHHHHHHHHHHCT---TEEEEECC-----TTSHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred EEEEcC-CHHHHHHHHHHhCC---ceEEEEec-----CCCHHHHHHHHHHHHHhcCCCCEEEECCccCC
Confidence 444443 33445555666666 78888887 34788888877765433223556777776543
No 289
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=40.53 E-value=1.4e+02 Score=26.59 Aligned_cols=44 Identities=11% Similarity=0.002 Sum_probs=29.4
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 78 ~~~~~~~D-----l~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~ 121 (267)
T 3u5t_A 78 KALTAQAD-----VSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTI 121 (267)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCG
T ss_pred eEEEEEcC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCh
Confidence 78888887 447888888887654432345677777776555544
No 290
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=40.25 E-value=73 Score=24.79 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=34.1
Q ss_pred ccCHHHHHHHHHHHHhCC-----CccEEEEEecCCccccccCChHHHHHHHHHhCCEEE
Q 041829 214 SLSPDSLAEAISRDLTIG-----LIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFH 267 (486)
Q Consensus 214 ~id~~~L~~~i~~~~~~g-----~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lh 267 (486)
..|++.+.+.|++..++. ..|+++-+..-. ...++.+|.++++++|+.++
T Consensus 24 ~~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~----~~~dl~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 24 EAEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLE----SPVNWPELHKIVTSTGLRII 78 (120)
T ss_dssp SCCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECC----SSCCHHHHHHHHHTTTCEEE
T ss_pred CCCHHHHHHHHHHHHHhChHhhCCCcEEEEccccC----ChHHHHHHHHHHHHcCCEEE
Confidence 348888888887765442 346554443322 23579999999999999874
No 291
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=40.14 E-value=1.1e+02 Score=27.38 Aligned_cols=59 Identities=24% Similarity=0.142 Sum_probs=35.8
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCc
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTT 244 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t 244 (486)
+++++. ......+.+..++. ++..+.+| .-|.+.+++.+++..+....+-+++-++|..
T Consensus 55 V~~~~r-~~~~~~~~~~~~~~---~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~ 113 (272)
T 4dyv_A 55 VALAGR-RLDALQETAAEIGD---DALCVPTD-----VTDPDSVRALFTATVEKFGRVDVLFNNAGTG 113 (272)
T ss_dssp EEEEES-CHHHHHHHHHHHTS---CCEEEECC-----TTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred EEEEEC-CHHHHHHHHHHhCC---CeEEEEec-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 444443 33445556666665 77888887 4478888888776543322345677777654
No 292
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=39.78 E-value=26 Score=33.10 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=36.3
Q ss_pred eCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh
Q 041829 206 KTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN 262 (486)
Q Consensus 206 ~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~ 262 (486)
|.++ ++.+|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+.
T Consensus 42 PF~~--dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~ 96 (343)
T 2v9d_A 42 IFTA--DGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDH 96 (343)
T ss_dssp CBCT--TSSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred CCCC--CCCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHH
Confidence 4444 358999999999988888776555555555555555555566666666553
No 293
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=39.23 E-value=99 Score=27.75 Aligned_cols=44 Identities=14% Similarity=0.038 Sum_probs=29.3
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.+++.+++..+.-..+-+++-++|....+.+
T Consensus 74 ~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 117 (279)
T 3sju_A 74 DVDGSSCD-----VTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGET 117 (279)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHCSCCEEEECCCCCCCSCG
T ss_pred cEEEEECC-----CCCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCCh
Confidence 78888887 448888888887654432235567777776655544
No 294
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=39.11 E-value=22 Score=33.16 Aligned_cols=50 Identities=10% Similarity=0.045 Sum_probs=29.1
Q ss_pred CccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh
Q 041829 213 YSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN 262 (486)
Q Consensus 213 ~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~ 262 (486)
+.+|.+.+++.++...+.|-.-+++..|.|..++=..+.-.++.+.+.+.
T Consensus 28 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~ 77 (316)
T 3e96_A 28 GSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEY 77 (316)
T ss_dssp CCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHH
Confidence 47888888888877777665443333344443444445555566655543
No 295
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=39.03 E-value=1.4e+02 Score=26.85 Aligned_cols=62 Identities=10% Similarity=-0.091 Sum_probs=34.4
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCc
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTT 244 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t 244 (486)
++++... .....+.+..+.-...++..+.+| .-|.+.+++.+++..+....+-++|-++|..
T Consensus 55 V~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~ 116 (283)
T 3v8b_A 55 VGALGRT-RTEVEEVADEIVGAGGQAIALEAD-----VSDELQMRNAVRDLVLKFGHLDIVVANAGIN 116 (283)
T ss_dssp EEEEESS-HHHHHHHHHHHTTTTCCEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred EEEEeCC-HHHHHHHHHHHHhcCCcEEEEEcc-----CCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 4444433 233444444332111278888887 4488888888876544322355677777653
No 296
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=38.49 E-value=20 Score=33.35 Aligned_cols=51 Identities=18% Similarity=0.115 Sum_probs=34.7
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN 262 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~ 262 (486)
++.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+.+.
T Consensus 22 dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~ 72 (311)
T 3h5d_A 22 DGSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKV 72 (311)
T ss_dssp TSSBCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 458888888888888777776555555555555555556666777776664
No 297
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=38.45 E-value=36 Score=32.13 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=34.0
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEE
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFH 267 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lh 267 (486)
++.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+-.-.+.++
T Consensus 41 dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~~grvpVi 96 (344)
T 2hmc_A 41 DRTPDFDALVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVERLVKAGIPVI 96 (344)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHHHhCCCCcEE
Confidence 45899999999998888777655555555454444444445555555222234444
No 298
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=38.40 E-value=1.6e+02 Score=25.87 Aligned_cols=63 Identities=5% Similarity=-0.048 Sum_probs=33.1
Q ss_pred eEEEecCCCchhHHHHHHHh-CCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCc
Q 041829 176 LVVYASDQTHSALQKACQIG-GIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTT 244 (486)
Q Consensus 176 ~~v~~s~~~H~s~~~a~~~~-g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t 244 (486)
.++++.... ....+..+.+ ..+..++..+++| .-|.+++++.+++..++-.++-.++-+++..
T Consensus 34 ~Vvi~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~G~iD~lvnnAg~~ 97 (256)
T 4fs3_A 34 KLVFTYRKE-RSRKELEKLLEQLNQPEAHLYQID-----VQSDEEVINGFEQIGKDVGNIDGVYHSIAFA 97 (256)
T ss_dssp EEEEEESSG-GGHHHHHHHHGGGTCSSCEEEECC-----TTCHHHHHHHHHHHHHHHCCCSEEEECCCCC
T ss_pred EEEEEECCH-HHHHHHHHHHHhcCCCcEEEEEcc-----CCCHHHHHHHHHHHHHHhCCCCEEEeccccc
Confidence 355555433 2333333332 2233367788887 4478888888776544322233455555543
No 299
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=37.12 E-value=2.1e+02 Score=25.01 Aligned_cols=48 Identities=17% Similarity=0.047 Sum_probs=32.1
Q ss_pred HhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 194 IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 194 ~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
..|. ++..+++| --|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 70 ~~~~---~~~~~~~D-----l~~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~ 117 (267)
T 3gdg_A 70 TYGI---KAKAYKCQ-----VDSYESCEKLVKDVVADFGQIDAFIANAGATADSGI 117 (267)
T ss_dssp HHCC---CEECCBCC-----TTCHHHHHHHHHHHHHHTSCCSEEEECCCCCCCSCT
T ss_pred hcCC---ceeEEecC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCc
Confidence 3466 88888887 448888888887765443345577777776555544
No 300
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=36.60 E-value=1.2e+02 Score=27.46 Aligned_cols=44 Identities=7% Similarity=-0.016 Sum_probs=29.2
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 81 ~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~ 124 (301)
T 3tjr_A 81 DAHGVVCD-----VRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPL 124 (301)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSSCSEEEECCCCCCCBCG
T ss_pred ceEEEEcc-----CCCHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCCc
Confidence 78888887 447888888877654332235567777776655544
No 301
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=36.02 E-value=1.5e+02 Score=25.88 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=31.2
Q ss_pred HhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 194 IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 194 ~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
..|. ++..++.| .-|.+.+++.+++..++-..+-+++-++|....+.+
T Consensus 51 ~~~~---~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 98 (246)
T 3osu_A 51 AKGV---DSFAIQAN-----VADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLL 98 (246)
T ss_dssp HTTS---CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCT
T ss_pred hcCC---cEEEEEcc-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 3455 78888887 448888888887654432235567777776655544
No 302
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=35.95 E-value=1.6e+02 Score=25.91 Aligned_cols=44 Identities=11% Similarity=-0.024 Sum_probs=29.2
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 55 ~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 98 (258)
T 3oid_A 55 KVLVVKAN-----VGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPV 98 (258)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCG
T ss_pred cEEEEEcC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCh
Confidence 78888887 448888888887654432235567777775554443
No 303
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=35.86 E-value=31 Score=31.61 Aligned_cols=56 Identities=13% Similarity=0.054 Sum_probs=34.6
Q ss_pred CccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 213 YSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 213 ~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
+.+|.+.+++.++...+.|-.-+++..|.|..++=..+.-.++.+.+.+. .+.+++
T Consensus 16 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvia 74 (289)
T 2yxg_A 16 KEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIA 74 (289)
T ss_dssp TEECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 48888888888888777775544444444444444445556666666553 355543
No 304
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=35.44 E-value=1.1e+02 Score=26.99 Aligned_cols=62 Identities=15% Similarity=-0.010 Sum_probs=29.8
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccc
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSST 247 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG 247 (486)
+++++... ....+.+..++. ++..+.+| --|.+.+++.+++..+.-..+-+++-++|....+
T Consensus 34 V~~~~r~~-~~~~~~~~~~~~---~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~ 95 (257)
T 3tpc_A 34 VLGLDLKP-PAGEEPAAELGA---AVRFRNAD-----VTNEADATAALAFAKQEFGHVHGLVNCAGTAPGE 95 (257)
T ss_dssp EEEEESSC-C---------------CEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCC
T ss_pred EEEEeCCh-HHHHHHHHHhCC---ceEEEEcc-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCC
Confidence 44444332 233344444454 67778877 4478888888876544322345677777765433
No 305
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=35.34 E-value=18 Score=35.82 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=27.9
Q ss_pred CCccccccCChHHHHHHHHHhCCEEEeeccc
Q 041829 242 GTTSSTAVDPLLALGNIAKSNGMWFHVDAAY 272 (486)
Q Consensus 242 ~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~ 272 (486)
..+..|..++++++++-||++|+.+++|..+
T Consensus 69 i~~~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 99 (496)
T 4gqr_A 69 LCTRSGNEDEFRNMVTRCNNVGVRIYVDAVI 99 (496)
T ss_dssp SCBTTBCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred eCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 4678899999999999999999999999753
No 306
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=35.23 E-value=28 Score=32.39 Aligned_cols=57 Identities=7% Similarity=0.001 Sum_probs=34.4
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
++.+|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 27 dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpVia 86 (314)
T 3d0c_A 27 TREIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVA 86 (314)
T ss_dssp TCCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEe
Confidence 358999999998888877775443333344444444445555666665543 355554
No 307
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=35.22 E-value=1.5e+02 Score=26.31 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=28.1
Q ss_pred HhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCC
Q 041829 194 IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGT 243 (486)
Q Consensus 194 ~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~ 243 (486)
..|. ++..+++| .-|.+++++.+++..++-.++-++|-++|.
T Consensus 53 ~~g~---~~~~~~~D-----vt~~~~v~~~~~~~~~~~G~iDiLVNNAGi 94 (254)
T 4fn4_A 53 GMGK---EVLGVKAD-----VSKKKDVEEFVRRTFETYSRIDVLCNNAGI 94 (254)
T ss_dssp HTTC---CEEEEECC-----TTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred hcCC---cEEEEEcc-----CCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 3455 88888887 458888888887765442234556666664
No 308
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=34.76 E-value=19 Score=33.38 Aligned_cols=57 Identities=7% Similarity=-0.031 Sum_probs=38.4
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
++.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 19 dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 78 (300)
T 3eb2_A 19 EGRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVA 78 (300)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 459999999999999888876555555555555555556666777776664 344444
No 309
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=34.50 E-value=1.4e+02 Score=26.64 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=27.5
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+++| .-|.+.+++++++..+.-..+-+++-++|....+.+
T Consensus 78 ~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~ 121 (276)
T 2b4q_A 78 DCQAIPAD-----LSSEAGARRLAQALGELSARLDILVNNAGTSWGAAL 121 (276)
T ss_dssp CEEECCCC-----TTSHHHHHHHHHHHHHHCSCCSEEEECCCCCCCCCT
T ss_pred ceEEEEee-----CCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCc
Confidence 56667766 448888888887654432234567777776554443
No 310
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=34.30 E-value=39 Score=23.79 Aligned_cols=47 Identities=4% Similarity=0.073 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHccCc-EEEEeeeECCEeEEEEEecCCCCCHHHHHHHHHHHHH
Q 041829 423 KLNHKLLDDINSTGK-IFISHTVLSGKYILRFAVGAPLTEWRHVNAAWEVMQD 474 (486)
Q Consensus 423 ~~~~~l~~~l~~~g~-~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~ 474 (486)
+...++..+|...|. ..+. .+..+.|+-+ .++.++++.+.+++.|++
T Consensus 21 ~~A~~~~~~L~~~g~~~~i~----~~~~~yRV~v-Gpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 21 ANADSLASNAEAKGFDSIVL----LKDGLYKVQI-GAFSSKDNADTLAARAKN 68 (79)
T ss_dssp HHHHHHHHHHHHHTCCEEEE----EETTEEEEEE-EEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCeEEe----cCCcEEEEEE-CCcCCHHHHHHHHHHHHH
Confidence 344667777777762 2222 2234678777 788899999999999876
No 311
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=33.67 E-value=35 Score=31.40 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=35.2
Q ss_pred CccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 213 YSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 213 ~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
+.+|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 16 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 74 (294)
T 2ehh_A 16 GEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIA 74 (294)
T ss_dssp TEECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 58999999999888877775544444444444444445556666666553 355543
No 312
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=33.55 E-value=2.1e+02 Score=25.10 Aligned_cols=43 Identities=7% Similarity=-0.052 Sum_probs=26.6
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
++..++.| .-|.+.+++.+++..+.-..+-+++-++|....+.
T Consensus 56 ~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~ 98 (260)
T 1x1t_A 56 KVLYDGAD-----LSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTAL 98 (260)
T ss_dssp CEEEECCC-----TTSHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCC
T ss_pred cEEEEECC-----CCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC
Confidence 77778776 44788888887764432223446777776544443
No 313
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=33.08 E-value=26 Score=32.76 Aligned_cols=57 Identities=12% Similarity=-0.021 Sum_probs=40.2
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
++.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 26 dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 85 (318)
T 3qfe_A 26 TDTLDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMA 85 (318)
T ss_dssp TTEECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 458999999999998888886655666666665555566667777777664 355554
No 314
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=32.99 E-value=46 Score=30.52 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=33.5
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN 262 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~ 262 (486)
++ +|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+.
T Consensus 17 dg-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 66 (291)
T 3a5f_A 17 TG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDK 66 (291)
T ss_dssp SS-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHH
T ss_pred CC-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 57 999999999988888776555555555555544555566666666553
No 315
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=32.57 E-value=2e+02 Score=24.97 Aligned_cols=65 Identities=12% Similarity=-0.031 Sum_probs=36.1
Q ss_pred eEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 176 LVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 176 ~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
.+++++........+.++..|. ++..+++| .-|.+.+++.+++..+.-..+-+++-++|....+.
T Consensus 33 ~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~ 97 (249)
T 2ew8_A 33 DIAIADLVPAPEAEAAIRNLGR---RVLTVKCD-----VSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIP 97 (249)
T ss_dssp EEEEEESSCCHHHHHHHHHTTC---CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCC
T ss_pred EEEEEcCCchhHHHHHHHhcCC---cEEEEEee-----cCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 3455554332333333334454 78888877 34788888877664432223456777777554443
No 316
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=32.40 E-value=1.4e+02 Score=26.62 Aligned_cols=44 Identities=14% Similarity=-0.010 Sum_probs=28.4
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.+++.+++..++...+-+++-++|....+.+
T Consensus 78 ~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 121 (277)
T 4fc7_A 78 RCLPLSMD-----VRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPA 121 (277)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred cEEEEEcC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCcCCCCCCc
Confidence 78888887 447888888877654432234567777775444433
No 317
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=32.38 E-value=31 Score=31.84 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=38.4
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh----CCEEEe
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN----GMWFHV 268 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~----g~~lhv 268 (486)
++.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 22 dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpvia 82 (301)
T 3m5v_A 22 NGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLA 82 (301)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 459999999999998888886555544444544444556666777766654 366665
No 318
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=32.27 E-value=1.8e+02 Score=25.31 Aligned_cols=44 Identities=16% Similarity=0.078 Sum_probs=28.0
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| --|.+.+++.+++..+.-..+-+++-++|....+.+
T Consensus 57 ~~~~~~~D-----v~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 100 (247)
T 2jah_A 57 KVHVLELD-----VADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPV 100 (247)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCS
T ss_pred cEEEEECC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCch
Confidence 77888877 447888888877654322234467777776555544
No 319
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=32.19 E-value=2.4e+02 Score=24.64 Aligned_cols=44 Identities=16% Similarity=0.030 Sum_probs=27.8
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCc-ccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTT-SSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t-~tG~i 249 (486)
++..+.+| --|.+.+++.+++..+.-..+-+++-++|.. ..+.+
T Consensus 59 ~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~ 103 (259)
T 3edm_A 59 SALAIKAD-----LTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTI 103 (259)
T ss_dssp CCEEEECC-----TTCHHHHHHHHHHHHHHHCSEEEEEECCCCCCCCCCT
T ss_pred ceEEEEcC-----CCCHHHHHHHHHHHHHHhCCCCEEEECCCccCCCCCh
Confidence 77788887 4488888888876544322355667677644 33444
No 320
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2
Probab=32.13 E-value=1.5e+02 Score=26.29 Aligned_cols=64 Identities=13% Similarity=0.025 Sum_probs=36.3
Q ss_pred eEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 176 LVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 176 ~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
.+++++.. .....+..+.++. ++..+++| .-|.+.+++.+++..+.-..+-+++-++|....+.
T Consensus 32 ~V~~~~r~-~~~~~~~~~~~~~---~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~ 95 (263)
T 2a4k_A 32 SLVAVDRE-ERLLAEAVAALEA---EAIAVVAD-----VSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSAL 95 (263)
T ss_dssp EEEEEESC-HHHHHHHHHTCCS---SEEEEECC-----TTSHHHHHHHHHHHHHHHSCCCEEEEGGGGTTTTC
T ss_pred EEEEEeCC-HHHHHHHHHHhcC---ceEEEEcC-----CCCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCC
Confidence 34444432 2334444444443 67788877 44788888887765433223456777777554443
No 321
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=31.73 E-value=2e+02 Score=25.51 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=29.0
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.+++.+++..+.-..+-+++-++|....+.+
T Consensus 82 ~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~ 125 (271)
T 3v2g_A 82 RAVAIRAD-----NRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPL 125 (271)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred cEEEEECC-----CCCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCCh
Confidence 78888887 458888888887654432235567777776554443
No 322
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=31.72 E-value=2.1e+02 Score=25.13 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=28.4
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| --|.+.+++.+++..++-..+-+++-++|....+.+
T Consensus 61 ~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~ 104 (262)
T 3pk0_A 61 KVIGVQTD-----VSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPL 104 (262)
T ss_dssp CEEEEECC-----TTSHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCT
T ss_pred cEEEEEcC-----CCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCh
Confidence 78888887 447888888777654332235567777776554444
No 323
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=31.52 E-value=2e+02 Score=25.14 Aligned_cols=44 Identities=16% Similarity=0.071 Sum_probs=28.3
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+++| .-|.+.+++++++..+.-..+-+++-++|....+.+
T Consensus 52 ~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 95 (256)
T 1geg_A 52 HAVAVKVD-----VSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPI 95 (256)
T ss_dssp CEEEEECC-----TTSHHHHHHHHHHHHHHTTCCCEEEECCCCCCCBCG
T ss_pred cEEEEEec-----CCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCh
Confidence 77888877 447888888887654432235567777775544433
No 324
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=31.45 E-value=23 Score=34.82 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=27.2
Q ss_pred CCccccccCChHHHHHHHHHhCCEEEeecccc
Q 041829 242 GTTSSTAVDPLLALGNIAKSNGMWFHVDAAYA 273 (486)
Q Consensus 242 ~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g 273 (486)
..+..|..++++++++-||++|+.+++|..+.
T Consensus 57 idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~N 88 (448)
T 1g94_A 57 LQSRGGNRAQFIDMVNRCSAAGVDIYVDTLIN 88 (448)
T ss_dssp SCBTTBCHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 35677889999999999999999999997643
No 325
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=31.23 E-value=1.8e+02 Score=22.39 Aligned_cols=86 Identities=10% Similarity=0.089 Sum_probs=50.0
Q ss_pred HHhcCCCeEEecCCCceEEEEEecCCCCCcccchHHHHHHHHHHHccCcE-EEEeee---ECCEeEEEEEecCCCCCHHH
Q 041829 389 LVAQDLRFEVVTPRIFSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKI-FISHTV---LSGKYILRFAVGAPLTEWRH 464 (486)
Q Consensus 389 ~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~~~~~~---~~~~~~lRi~~~~~~~t~~d 464 (486)
+.+++ .+++... .-+...|.+...+ ..+-..|...|.+.-.+ ++++.. ......||+-. ....-.+-
T Consensus 7 ~~~km-eiki~~k-~~n~~~f~i~~ED------HTLgNlLr~~Llkdp~V~fAgY~vpHPle~~~~lrIqT-~~~~p~ea 77 (115)
T 1xpp_A 7 RTAES-SLRVISK-EKNSITVEMINYD------NTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRV-KSGKPQSA 77 (115)
T ss_dssp --CCC-EEEEEEE-CSSEEEEEEESCC------HHHHHHHHHHHTTCTTEEEEEEECSSTTTSCCEEEEEE-SSSCHHHH
T ss_pred cccce-EEEEEcC-CCCEEEEEEeCCC------chhHHHHHHHHhcCCCeEEEEeecCCCCCCccEEEEEe-CCCChHHH
Confidence 33444 4566542 2345566665532 45666778888876544 444443 23567899988 44444555
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 041829 465 VNAAWEVMQDKASALLARL 483 (486)
Q Consensus 465 i~~~~~~l~~~~~~l~~~~ 483 (486)
+...++.|.+.++.+.+..
T Consensus 78 L~~al~~L~~~~~~l~~~f 96 (115)
T 1xpp_A 78 IKRAVRKLSKLYEDLGTQF 96 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777766665543
No 326
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=31.18 E-value=2.8e+02 Score=24.58 Aligned_cols=62 Identities=11% Similarity=-0.005 Sum_probs=35.9
Q ss_pred eEEEecCCCc-hhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcc
Q 041829 176 LVVYASDQTH-SALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTS 245 (486)
Q Consensus 176 ~~v~~s~~~H-~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~ 245 (486)
.++++..... ....+.....|. ++..+++| .-|.+++++.+++..++-.++-++|-++|.+.
T Consensus 33 ~Vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~D-----v~~~~~v~~~v~~~~~~~G~iDiLVNnAGi~~ 95 (258)
T 4gkb_A 33 IPVVFARHAPDGAFLDALAQRQP---RATYLPVE-----LQDDAQCRDAVAQTIATFGRLDGLVNNAGVND 95 (258)
T ss_dssp EEEEEESSCCCHHHHHHHHHHCT---TCEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred EEEEEECCcccHHHHHHHHhcCC---CEEEEEee-----cCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 3455554332 233333444565 77888887 44888888888776544223446666776543
No 327
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=31.00 E-value=1.9e+02 Score=25.54 Aligned_cols=44 Identities=5% Similarity=-0.089 Sum_probs=27.2
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.+++++++..+.-..+-+++-++|....+.+
T Consensus 72 ~~~~~~~D-----l~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~ 115 (267)
T 1vl8_A 72 ETMAFRCD-----VSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPA 115 (267)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred eEEEEEcC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCh
Confidence 77888877 347888888877644321234467777775544433
No 328
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=30.71 E-value=1.5e+02 Score=26.17 Aligned_cols=48 Identities=10% Similarity=-0.026 Sum_probs=31.4
Q ss_pred HhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 194 IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 194 ~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
..|. ++..+.+| .-|.+.+++.+++..++-..+-+++-++|....+.+
T Consensus 65 ~~~~---~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~ 112 (270)
T 3is3_A 65 ALGS---DAIAIKAD-----IRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHL 112 (270)
T ss_dssp HTTC---CEEEEECC-----TTSHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCG
T ss_pred hcCC---cEEEEEcC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 3455 78888887 448888888887654432235567777776655554
No 329
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=30.64 E-value=84 Score=27.58 Aligned_cols=52 Identities=8% Similarity=-0.043 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhCCCccEEEEEecCCcc----------ccccCChHHHHHHHHHhCCEEE
Q 041829 216 SPDSLAEAISRDLTIGLIPFFLCATVGTTS----------STAVDPLLALGNIAKSNGMWFH 267 (486)
Q Consensus 216 d~~~L~~~i~~~~~~g~~p~~vv~~~~~t~----------tG~id~l~~I~~ia~~~g~~lh 267 (486)
..-+=|++++=.+-.|..|..|++..-+-. .|..-..+++.++|++||+.++
T Consensus 150 R~GHTEAaVDLarLAGl~PagVicEi~~~~~~~~~~~~~~dG~mar~~~l~~fA~~h~L~ii 211 (233)
T 1k4i_A 150 RRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVC 211 (233)
T ss_dssp CCSHHHHHHHHHHHTTCCSBEEEEEBEECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEE
T ss_pred cCChHHHHHHHHHHcCCCceEEEEEeCCCcccccccccCCCCCcCCHHHHHHHHHHcCCcEE
Confidence 344456667666677888988887665321 5888999999999999999875
No 330
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=30.58 E-value=2.6e+02 Score=24.87 Aligned_cols=39 Identities=8% Similarity=-0.206 Sum_probs=24.7
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTT 244 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t 244 (486)
++..+.+| .-|.+.+++.+++..++-..+-+++-++|..
T Consensus 58 ~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~ 96 (280)
T 3tox_A 58 EAAALAGD-----VGDEALHEALVELAVRRFGGLDTAFNNAGAL 96 (280)
T ss_dssp CEEECCCC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred cEEEEECC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 77777776 4478888887776543322345677777643
No 331
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=30.55 E-value=1.4e+02 Score=26.59 Aligned_cols=44 Identities=14% Similarity=0.012 Sum_probs=29.0
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 79 ~~~~~~~D-----~~d~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 122 (269)
T 4dmm_A 79 EAFAVKAD-----VSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLL 122 (269)
T ss_dssp CEEEEECC-----TTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred cEEEEECC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 78888887 448888888887654432235567777776655543
No 332
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=30.48 E-value=2.2e+02 Score=25.26 Aligned_cols=48 Identities=13% Similarity=0.020 Sum_probs=30.5
Q ss_pred HhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 194 IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 194 ~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
..|. ++..+.+| .-|.+.+++.+++..++-..+-+++-++|....+.+
T Consensus 74 ~~~~---~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~ 121 (270)
T 3ftp_A 74 QAGL---EGRGAVLN-----VNDATAVDALVESTLKEFGALNVLVNNAGITQDQLA 121 (270)
T ss_dssp HHTC---CCEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCT
T ss_pred hcCC---cEEEEEEe-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 3465 77778776 447888888877654332234567777776655544
No 333
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=30.30 E-value=60 Score=25.33 Aligned_cols=47 Identities=17% Similarity=0.080 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEEeeccc
Q 041829 216 SPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAAY 272 (486)
Q Consensus 216 d~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~ 272 (486)
.++.+.+.+++..+.|-+ .|+++.|. .+ +++.++|+++|+.++ ..|.
T Consensus 67 p~~~v~~~v~e~~~~g~k--~v~~~~G~-----~~--~e~~~~a~~~Girvv-~nC~ 113 (122)
T 3ff4_A 67 NPQNQLSEYNYILSLKPK--RVIFNPGT-----EN--EELEEILSENGIEPV-IGCT 113 (122)
T ss_dssp CHHHHGGGHHHHHHHCCS--EEEECTTC-----CC--HHHHHHHHHTTCEEE-ESCH
T ss_pred CHHHHHHHHHHHHhcCCC--EEEECCCC-----Ch--HHHHHHHHHcCCeEE-CCcC
Confidence 455566666666555543 46666553 22 799999999999987 4443
No 334
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=30.23 E-value=2e+02 Score=27.48 Aligned_cols=82 Identities=18% Similarity=0.103 Sum_probs=52.0
Q ss_pred chhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCc-ccc---ccCChHHHHHHHH
Q 041829 185 HSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTT-SST---AVDPLLALGNIAK 260 (486)
Q Consensus 185 H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t-~tG---~id~l~~I~~ia~ 260 (486)
+..+.+.+...|. ++.+... ...+++++..+++.-...|...++++ -.|++ ... ..-++..|..+.+
T Consensus 238 n~~LL~~~a~~gk----PVilk~G----~~~t~~e~~~Ave~i~~~Gn~~i~L~-~rG~s~yp~~~~~~ldl~~i~~lk~ 308 (385)
T 3nvt_A 238 NFELLKAAGRVDK----PILLKRG----LSATIEEFIGAAEYIMSQGNGKIILC-ERGIRTYEKATRNTLDISAVPILKK 308 (385)
T ss_dssp CHHHHHHHHTSSS----CEEEECC----TTCCHHHHHHHHHHHHTTTCCCEEEE-ECCBCCSCCSSSSBCCTTHHHHHHH
T ss_pred CHHHHHHHHccCC----cEEEecC----CCCCHHHHHHHHHHHHHcCCCeEEEE-ECCCCCCCCCCccccCHHHHHHHHH
Confidence 3444454444444 4455532 12799999999988777775544333 33332 211 1247888999888
Q ss_pred HhCCEEEeeccccch
Q 041829 261 SNGMWFHVDAAYAGS 275 (486)
Q Consensus 261 ~~g~~lhvD~A~g~~ 275 (486)
..++.+++|.+|+++
T Consensus 309 ~~~lpV~~D~th~~G 323 (385)
T 3nvt_A 309 ETHLPVMVDVTHSTG 323 (385)
T ss_dssp HBSSCEEEEHHHHHC
T ss_pred hcCCCEEEcCCCCCC
Confidence 899999999999764
No 335
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=30.15 E-value=1.7e+02 Score=25.77 Aligned_cols=47 Identities=21% Similarity=0.131 Sum_probs=27.2
Q ss_pred hCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 195 GGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 195 ~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
.|. ++..+.+|- -|.+.+++.+++..+.-..+-+++-++|....+.+
T Consensus 68 ~~~---~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 114 (266)
T 4egf_A 68 FGT---DVHTVAIDL-----AEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPV 114 (266)
T ss_dssp HCC---CEEEEECCT-----TSTTHHHHHHHHHHHHHTSCSEEEEECCCCCCCCG
T ss_pred cCC---cEEEEEecC-----CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCh
Confidence 455 788888874 35566666665443322234567777776554443
No 336
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=30.09 E-value=2.2e+02 Score=25.22 Aligned_cols=43 Identities=12% Similarity=-0.066 Sum_probs=27.6
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
++..+++| .-|.+.+++.+++..+.-..+-+++-++|....+.
T Consensus 72 ~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~ 114 (277)
T 2rhc_B 72 EADGRTCD-----VRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGA 114 (277)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHTCSCSEEEECCCCCCCSC
T ss_pred ceEEEECC-----CCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 77788877 44788888888765433223456777777554443
No 337
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=29.89 E-value=29 Score=31.79 Aligned_cols=50 Identities=20% Similarity=0.289 Sum_probs=34.2
Q ss_pred CccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh
Q 041829 213 YSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN 262 (486)
Q Consensus 213 ~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~ 262 (486)
+.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+.+.
T Consensus 14 g~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~ 63 (286)
T 2r91_A 14 GRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSA 63 (286)
T ss_dssp TEECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 58999999999988888775544444444544444445566777776664
No 338
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=29.73 E-value=1.7e+02 Score=21.50 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=46.7
Q ss_pred eEEEEEecCCCCCcccchHHHHHHHHHHHccCcE-EEEeee---ECCEeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 041829 405 SLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKI-FISHTV---LSGKYILRFAVGAPLTEWRHVNAAWEVMQDKASALL 480 (486)
Q Consensus 405 ~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~~~~~~---~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~l~ 480 (486)
+...|.+...+ ..+...|...|.+.-.+ +.++.. ......+|+-.....+-.+-+.+.++.|.+.++.+.
T Consensus 11 n~~~f~i~~ED------HTLgN~Lr~~L~~~p~V~fagY~vpHPl~~~~~lrIqT~~~~~p~~al~~a~~~l~~~~~~~~ 84 (92)
T 2pa8_L 11 NYLELEIEGED------HTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMTSHYI 84 (92)
T ss_dssp TEEEEEEETCC------HHHHHHHHHHHHTSTTEEEEEEECSSTTSCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEecCc------hhHHHHHHHHHhcCCCeeEEEeecCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34556665432 45566777888776544 444443 235678999883333444668888888888887777
Q ss_pred Hhhh
Q 041829 481 ARLS 484 (486)
Q Consensus 481 ~~~~ 484 (486)
+..+
T Consensus 85 ~~f~ 88 (92)
T 2pa8_L 85 DEIK 88 (92)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 339
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=29.72 E-value=1.5e+02 Score=26.29 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=31.1
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP 251 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~ 251 (486)
++..+.+| .-|.+++++.+++..++-.++-++|-++|.+..+.+.+
T Consensus 48 ~~~~~~~D-----v~~~~~v~~~v~~~~~~~g~iDiLVNNAG~~~~~~~~~ 93 (247)
T 3ged_A 48 NLFYFHGD-----VADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSS 93 (247)
T ss_dssp TEEEEECC-----TTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCGGGT
T ss_pred CEEEEEec-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCccc
Confidence 67788877 45888888888776554223456777777766666543
No 340
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...
Probab=29.64 E-value=1.8e+02 Score=25.66 Aligned_cols=62 Identities=15% Similarity=0.047 Sum_probs=34.6
Q ss_pred eEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhC-C--CccEEEEEecCCcc
Q 041829 176 LVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTI-G--LIPFFLCATVGTTS 245 (486)
Q Consensus 176 ~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~-g--~~p~~vv~~~~~t~ 245 (486)
.+++++........+....++. ++..+++| .-|.+.+++.+++..+. | ..+-+++-++|...
T Consensus 35 ~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~~~~iD~lv~nAg~~~ 99 (269)
T 2h7i_A 35 QLVLTGFDRLRLIQRITDRLPA---KAPLLELD-----VQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMP 99 (269)
T ss_dssp EEEEEECSCHHHHHHHHTTSSS---CCCEEECC-----TTCHHHHHHHHHHHHHHHCTTCCEEEEEECCCCCC
T ss_pred EEEEEecChHHHHHHHHHhcCC---CceEEEcc-----CCCHHHHHHHHHHHHHHhCCCCCceEEEECCccCc
Confidence 3555554433323444444443 56677776 34788888887765432 2 14566777776543
No 341
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=29.37 E-value=1.8e+02 Score=22.59 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=43.3
Q ss_pred CCeEEEecCCCchhHH--HHHHHh---CCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 174 EKLVVYASDQTHSALQ--KACQIG---GIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 174 ~~~~v~~s~~~H~s~~--~a~~~~---g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
.+.+||+...+.+|.. +..... |+ ....+.++.+ -|.+.+++.+.+.......|.+.+ .| ...|.
T Consensus 14 ~~Vvvysk~~Cp~C~~ak~lL~~~~~~~v---~~~~idid~~----~d~~~~~~~l~~~~G~~tVP~IfI--~G-~~IGG 83 (127)
T 3l4n_A 14 SPIIIFSKSTCSYSKGMKELLENEYQFIP---NYYIIELDKH----GHGEELQEYIKLVTGRGTVPNLLV--NG-VSRGG 83 (127)
T ss_dssp CSEEEEECTTCHHHHHHHHHHHHHEEEES---CCEEEEGGGS----TTHHHHHHHHHHHHSCCSSCEEEE--TT-EECCC
T ss_pred CCEEEEEcCCCccHHHHHHHHHHhcccCC---CcEEEEecCC----CCHHHHHHHHHHHcCCCCcceEEE--CC-EEEcC
Confidence 5677787766666632 333332 45 6777787642 377788888877655555675433 33 35566
Q ss_pred cCChHHH
Q 041829 249 VDPLLAL 255 (486)
Q Consensus 249 id~l~~I 255 (486)
.|++.++
T Consensus 84 ~ddl~~l 90 (127)
T 3l4n_A 84 NEEIKKL 90 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 342
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=29.26 E-value=2.4e+02 Score=25.22 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=27.9
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSST 247 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG 247 (486)
++..+..| --|.+.+++++++..+....+-+|+-+++....+
T Consensus 77 ~~~~~~~D-----l~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~ 118 (302)
T 1w6u_A 77 KVHAIQCD-----VRDPDMVQNTVSELIKVAGHPNIVINNAAGNFIS 118 (302)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHTCSCSEEEECCCCCCCS
T ss_pred ceEEEEeC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCC
Confidence 78888877 4488888888877544333455677777754443
No 343
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=29.21 E-value=1.5e+02 Score=25.98 Aligned_cols=63 Identities=13% Similarity=-0.072 Sum_probs=34.6
Q ss_pred eEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccc
Q 041829 176 LVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSST 247 (486)
Q Consensus 176 ~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG 247 (486)
.+++++.. .....+.++.+|. ++..+++| .-|.+.+++.+++..+.-..+-+++-++|....+
T Consensus 31 ~V~~~~r~-~~~~~~~~~~~~~---~~~~~~~D-----~~~~~~~~~~~~~~~~~~g~iD~lv~nAg~~~~~ 93 (254)
T 1hdc_A 31 RVVLADVL-DEEGAATARELGD---AARYQHLD-----VTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGM 93 (254)
T ss_dssp EEEEEESC-HHHHHHHHHTTGG---GEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCS
T ss_pred EEEEEeCC-HHHHHHHHHHhCC---ceeEEEec-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCC
Confidence 34454443 2233444444444 67777776 3478888887776443222345677777655444
No 344
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=28.87 E-value=1.6e+02 Score=26.45 Aligned_cols=87 Identities=14% Similarity=0.027 Sum_probs=52.4
Q ss_pred CCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecC---CccccccCChHHHHHH
Q 041829 182 DQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVG---TTSSTAVDPLLALGNI 258 (486)
Q Consensus 182 ~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~---~t~tG~id~l~~I~~i 258 (486)
...+..+.+.+...|. .+.+... ...+++++..+++.....|..-+.++--.+ ++..=..-+|..|..+
T Consensus 116 ~~~n~~ll~~~a~~~k----PV~lk~G----~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~l 187 (262)
T 1zco_A 116 NSQNFELLKEVGKVEN----PVLLKRG----MGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVV 187 (262)
T ss_dssp GTTCHHHHHHHTTSSS----CEEEECC----TTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHH
T ss_pred cccCHHHHHHHHhcCC----cEEEecC----CCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHH
Confidence 3334444444433454 4455532 134899999999877776754444444211 1222122367888888
Q ss_pred HHHhCCEEEeeccccchh
Q 041829 259 AKSNGMWFHVDAAYAGSA 276 (486)
Q Consensus 259 a~~~g~~lhvD~A~g~~~ 276 (486)
.+.+++.+|+|..|+.+.
T Consensus 188 k~~~~~pVi~d~sH~~g~ 205 (262)
T 1zco_A 188 KELSHLPIIVDPSHPAGR 205 (262)
T ss_dssp HHHBSSCEEECSSTTTCS
T ss_pred HhhhCCCEEEEcCCCCCc
Confidence 888899999999998653
No 345
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=28.83 E-value=33 Score=31.81 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=35.2
Q ss_pred CCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh
Q 041829 212 NYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN 262 (486)
Q Consensus 212 ~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~ 262 (486)
++.+|.+.+++.++...+.|-.-+++..|.|..++=..+.-.++.+.+.+.
T Consensus 27 dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~ 77 (306)
T 1o5k_A 27 NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEI 77 (306)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHH
Confidence 359999999999998888876555555555555555555666777776653
No 346
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=28.60 E-value=3e+02 Score=24.17 Aligned_cols=44 Identities=7% Similarity=0.015 Sum_probs=28.5
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+..| .-|.+.+++.+++..+....+-+|+-++|....+.+
T Consensus 81 ~~~~~~~D-----l~~~~~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~ 124 (272)
T 1yb1_A 81 KVHTFVVD-----CSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDL 124 (272)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHTCCCSEEEECCCCCCCCCC
T ss_pred eEEEEEee-----CCCHHHHHHHHHHHHHHCCCCcEEEECCCcCCCcch
Confidence 77888877 447888888887654332235567777776554443
No 347
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=28.59 E-value=29 Score=33.94 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=24.0
Q ss_pred CccccccCChHHHHHHHHHhCCEEEeeccc
Q 041829 243 TTSSTAVDPLLALGNIAKSNGMWFHVDAAY 272 (486)
Q Consensus 243 ~t~tG~id~l~~I~~ia~~~g~~lhvD~A~ 272 (486)
.+..|..++++++++-||++|+.+++|...
T Consensus 80 d~~~Gt~~df~~lv~~~H~~Gi~VilD~V~ 109 (435)
T 1mxg_A 80 ETRFGSKEELVRLIQTAHAYGIKVIADVVI 109 (435)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 455677888888888888888888888754
No 348
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=28.57 E-value=28 Score=34.52 Aligned_cols=32 Identities=13% Similarity=-0.097 Sum_probs=27.2
Q ss_pred CCccccccCChHHHHHHHHHhCCEEEeecccc
Q 041829 242 GTTSSTAVDPLLALGNIAKSNGMWFHVDAAYA 273 (486)
Q Consensus 242 ~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g 273 (486)
..+..|..++++++++-||++|+.+++|....
T Consensus 71 id~~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 102 (483)
T 3bh4_A 71 VRTKYGTKSELQDAIGSLHSRNVQVYGDVVLN 102 (483)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 34567888999999999999999999998643
No 349
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=28.55 E-value=2.2e+02 Score=24.96 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=27.3
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+++| .-|.+.+++++++..+.-..+-+++-++|....+.+
T Consensus 58 ~~~~~~~D-----~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~ 101 (263)
T 3ai3_A 58 RVLEVAVD-----VATPEGVDAVVESVRSSFGGADILVNNAGTGSNETI 101 (263)
T ss_dssp CEEEEECC-----TTSHHHHHHHHHHHHHHHSSCSEEEECCCCCCCCCT
T ss_pred ceEEEEcC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 77888877 347888888877643321224467777765544433
No 350
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=28.47 E-value=20 Score=32.87 Aligned_cols=58 Identities=9% Similarity=-0.017 Sum_probs=35.2
Q ss_pred eCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhCCEEE
Q 041829 206 KTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFH 267 (486)
Q Consensus 206 ~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lh 267 (486)
|.++ ++.+|.+.+++.++...+. -.-+++..+.|...+=..+.-.++.+.+.+ .+.++
T Consensus 9 Pf~~--dg~iD~~~l~~lv~~li~~-v~gl~v~GttGE~~~Ls~~Er~~v~~~~~~-rvpvi 66 (283)
T 2pcq_A 9 PFDR--EGRLDEEAFRELAQALEPL-VDGLLVYGSNGEGVHLTPEERARGLRALRP-RKPFL 66 (283)
T ss_dssp CBCT--TCCBCHHHHHHHHHHHGGG-SSCCEETCTTTTGGGSCHHHHHHHHHTCCC-SSCCE
T ss_pred CCCC--CCCcCHHHHHHHHHHHHhh-CCEEEECCcCcCchhcCHHHHHHHHHHHHh-CCcEE
Confidence 4444 3599999999999877655 333444444444444444555666666665 55554
No 351
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Probab=28.43 E-value=1.8e+02 Score=25.95 Aligned_cols=60 Identities=18% Similarity=-0.053 Sum_probs=35.7
Q ss_pred eEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCc
Q 041829 176 LVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTT 244 (486)
Q Consensus 176 ~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t 244 (486)
.+++++. ......+....++. ++..+.+| .-|.+.+++.+++..+....+-+++-++|..
T Consensus 31 ~V~~~~r-~~~~~~~~~~~~~~---~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~ 90 (281)
T 3zv4_A 31 RVAVLDK-SAERLRELEVAHGG---NAVGVVGD-----VRSLQDQKRAAERCLAAFGKIDTLIPNAGIW 90 (281)
T ss_dssp EEEEEES-CHHHHHHHHHHTBT---TEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEECCCCCC
T ss_pred EEEEEeC-CHHHHHHHHHHcCC---cEEEEEcC-----CCCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 3444443 33344555555665 78888887 4478888888776544322345667666643
No 352
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=28.30 E-value=2.5e+02 Score=24.40 Aligned_cols=63 Identities=13% Similarity=-0.057 Sum_probs=36.0
Q ss_pred eEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccc
Q 041829 176 LVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSST 247 (486)
Q Consensus 176 ~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG 247 (486)
.++++.... ....+..+.++. ++..+++| .-|.+.+++++++..+....+-+|+-+++....+
T Consensus 38 ~V~~~~r~~-~~~~~~~~~~~~---~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~ 100 (265)
T 2o23_A 38 SAVLLDLPN-SGGEAQAKKLGN---NCVFAPAD-----VTSEKDVQTALALAKGKFGRVDVAVNCAGIAVAS 100 (265)
T ss_dssp EEEEEECTT-SSHHHHHHHHCT---TEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCC
T ss_pred EEEEEeCCc-HhHHHHHHHhCC---ceEEEEcC-----CCCHHHHHHHHHHHHHHCCCCCEEEECCccCCCC
Confidence 344444432 334445555565 78888887 3478888887775443222345677777654433
No 353
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=28.30 E-value=1.6e+02 Score=25.80 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=25.4
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSST 247 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG 247 (486)
++..+++| .-|.+.+++++++..+....+-+|+-++|....+
T Consensus 59 ~~~~~~~D-----~~d~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~ 100 (263)
T 3ak4_A 59 GGFAVEVD-----VTKRASVDAAMQKAIDALGGFDLLCANAGVSTMR 100 (263)
T ss_dssp CCEEEECC-----TTCHHHHHHHHHHHHHHHTCCCEEEECCCCCCCC
T ss_pred CCeEEEEe-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCC
Confidence 55667776 3478888887776443222345677777655444
No 354
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=28.13 E-value=29 Score=34.45 Aligned_cols=32 Identities=19% Similarity=-0.060 Sum_probs=27.1
Q ss_pred CCccccccCChHHHHHHHHHhCCEEEeecccc
Q 041829 242 GTTSSTAVDPLLALGNIAKSNGMWFHVDAAYA 273 (486)
Q Consensus 242 ~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g 273 (486)
..+..|..++++++++-||++|+.+++|....
T Consensus 73 idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 104 (480)
T 1ud2_A 73 VRTKYGTKAQLERAIGSLKSNDINVYGDVVMN 104 (480)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 34567888999999999999999999998643
No 355
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=27.97 E-value=1.4e+02 Score=27.48 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=23.4
Q ss_pred CeEEEecCCC-chhHHHHHHHhCCCCCCeEEEeCC
Q 041829 175 KLVVYASDQT-HSALQKACQIGGIHPQNFRVLKTD 208 (486)
Q Consensus 175 ~~~v~~s~~~-H~s~~~a~~~~g~g~~~v~~v~~~ 208 (486)
+.+|+++... -..-.+.++.+|. +|+.++.+
T Consensus 97 ~~~iv~p~~~~~~~k~~~~~~~GA---~v~~~~~~ 128 (325)
T 1j0a_A 97 DAILVLRGKEELKGNYLLDKIMGI---ETRVYDAK 128 (325)
T ss_dssp EEEEEEESCCCSCHHHHHHHHTTC---EEEEESCC
T ss_pred cEEEEECCCCCCCchHHHHHHCCC---EEEEeCcc
Confidence 5577788776 5566678888999 99888754
No 356
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=27.95 E-value=2e+02 Score=25.25 Aligned_cols=44 Identities=9% Similarity=-0.074 Sum_probs=28.8
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 60 ~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~ 103 (265)
T 3lf2_A 60 RLFASVCD-----VLDALQVRAFAEACERTLGCASILVNNAGQGRVSTF 103 (265)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHCSCSEEEECCCCCCCBCT
T ss_pred eEEEEeCC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 57888887 447888888777654432234567777776655554
No 357
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}
Probab=27.79 E-value=2.5e+02 Score=24.49 Aligned_cols=60 Identities=20% Similarity=0.132 Sum_probs=35.7
Q ss_pred eEEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCC
Q 041829 176 LVVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGT 243 (486)
Q Consensus 176 ~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~ 243 (486)
..|+..........+..+.+|. ++..+.+| .-|.+.+++.+++..+....+-+++-++|.
T Consensus 29 ~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lvnnAg~ 88 (254)
T 3kzv_A 29 TVVYGVARSEAPLKKLKEKYGD---RFFYVVGD-----ITEDSVLKQLVNAAVKGHGKIDSLVANAGV 88 (254)
T ss_dssp CEEEEEESCHHHHHHHHHHHGG---GEEEEESC-----TTSHHHHHHHHHHHHHHHSCCCEEEEECCC
T ss_pred eEEEEecCCHHHHHHHHHHhCC---ceEEEECC-----CCCHHHHHHHHHHHHHhcCCccEEEECCcc
Confidence 3444332233344555555565 78888887 447888888887654432235567777775
No 358
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=27.69 E-value=2.6e+02 Score=24.33 Aligned_cols=44 Identities=11% Similarity=-0.132 Sum_probs=29.8
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+++| --|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 60 ~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~ 103 (250)
T 3nyw_A 60 EPIVLPLD-----ITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSL 103 (250)
T ss_dssp CCEEEECC-----TTCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCC
T ss_pred cceEEecc-----CCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCC
Confidence 67788887 448888888887654433345677778876655554
No 359
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Probab=27.68 E-value=2.8e+02 Score=24.07 Aligned_cols=42 Identities=7% Similarity=-0.175 Sum_probs=26.2
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSST 247 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG 247 (486)
++..++.| --|.+.+++++++..+.-..+-+++-++|....+
T Consensus 52 ~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~ 93 (255)
T 2q2v_A 52 KAVHHPAD-----LSDVAQIEALFALAEREFGGVDILVNNAGIQHVA 93 (255)
T ss_dssp CEEEECCC-----TTSHHHHHHHHHHHHHHHSSCSEEEECCCCCCCB
T ss_pred ceEEEeCC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCC
Confidence 67777776 4478888888775443212244677777655444
No 360
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=27.56 E-value=1.4e+02 Score=25.66 Aligned_cols=48 Identities=15% Similarity=0.010 Sum_probs=30.3
Q ss_pred hCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC
Q 041829 195 GGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD 250 (486)
Q Consensus 195 ~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id 250 (486)
.|. ++..+++| --|.+.+++.+++..+....+-+++-++|....+.+.
T Consensus 50 ~~~---~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~ 97 (235)
T 3l77_A 50 QGV---EVFYHHLD-----VSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLE 97 (235)
T ss_dssp HCC---CEEEEECC-----TTCHHHHHHHCC-HHHHHSSCSEEEECCCCCCCCCTT
T ss_pred cCC---eEEEEEec-----cCCHHHHHHHHHHHHHhcCCCCEEEECCccccccCcc
Confidence 455 88888887 4478888877765443322355777788766555543
No 361
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=27.50 E-value=3e+02 Score=23.78 Aligned_cols=51 Identities=16% Similarity=0.011 Sum_probs=33.8
Q ss_pred HHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 191 ACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 191 a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
.....+. ++..+..| .-|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 57 ~~~~~~~---~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~ 107 (256)
T 3ezl_A 57 DQKALGF---DFYASEGN-----VGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVF 107 (256)
T ss_dssp HHHHTTC---CCEEEECC-----TTCHHHHHHHHHHHHHHTCCEEEEEECCCCCCCCCT
T ss_pred HHHhcCC---eeEEEecC-----CCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCch
Confidence 3344455 77888877 458888888887765443446677778776655544
No 362
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=27.40 E-value=31 Score=34.24 Aligned_cols=32 Identities=22% Similarity=0.066 Sum_probs=27.4
Q ss_pred CCccccccCChHHHHHHHHHhCCEEEeecccc
Q 041829 242 GTTSSTAVDPLLALGNIAKSNGMWFHVDAAYA 273 (486)
Q Consensus 242 ~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g 273 (486)
..+..|..++++++++-||++|+.+++|....
T Consensus 75 idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~N 106 (485)
T 1wpc_A 75 VRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMN 106 (485)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 34567888999999999999999999998643
No 363
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=27.34 E-value=76 Score=30.35 Aligned_cols=60 Identities=23% Similarity=0.180 Sum_probs=39.2
Q ss_pred ccCHHHHHHHHHHHHhCCCccEEEEEecCCc-cccccCChHHHHHHHHHhCCEEEeecccc
Q 041829 214 SLSPDSLAEAISRDLTIGLIPFFLCATVGTT-SSTAVDPLLALGNIAKSNGMWFHVDAAYA 273 (486)
Q Consensus 214 ~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t-~tG~id~l~~I~~ia~~~g~~lhvD~A~g 273 (486)
.-+.+..++-|+...+.|..-++-.+-.+.. ..-....+++|.++|+++|+-+++|-+-.
T Consensus 37 ~~~~~~~~~Yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DVsp~ 97 (385)
T 1x7f_A 37 HSTKEKDMAYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPA 97 (385)
T ss_dssp GSCHHHHHHHHHHHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 3466777788888878886544444433322 23344678999999999999999997543
No 364
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=27.34 E-value=2.5e+02 Score=25.17 Aligned_cols=43 Identities=14% Similarity=0.031 Sum_probs=27.7
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
++..+++| .-|.+.+++++++..+.-..+-+++-++|....+.
T Consensus 84 ~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~ 126 (291)
T 3cxt_A 84 NAHGYVCD-----VTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVP 126 (291)
T ss_dssp CCEEEECC-----TTCHHHHHHHHHHHHHHTCCCCEEEECCCCCCCCC
T ss_pred eEEEEEec-----CCCHHHHHHHHHHHHHHcCCCcEEEECCCcCCCCC
Confidence 67778876 44888888888765443223556777777554443
No 365
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=27.33 E-value=30 Score=34.71 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=26.4
Q ss_pred CccccccCChHHHHHHHHHhCCEEEeeccc
Q 041829 243 TTSSTAVDPLLALGNIAKSNGMWFHVDAAY 272 (486)
Q Consensus 243 ~t~tG~id~l~~I~~ia~~~g~~lhvD~A~ 272 (486)
.+..|..++++++++-||++|+.+++|...
T Consensus 75 dp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 104 (515)
T 1hvx_A 75 RTKYGTKAQYLQAIQAAHAAGMQVYADVVF 104 (515)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 456788899999999999999999999864
No 366
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=27.23 E-value=2.2e+02 Score=25.18 Aligned_cols=59 Identities=15% Similarity=-0.057 Sum_probs=34.9
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCc
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTT 244 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t 244 (486)
+++++.. .....+.+..+|. ++..+.+| .-|.+.+++.+++..+.-..+-+++-+++..
T Consensus 38 V~~~~r~-~~~~~~~~~~~~~---~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 96 (271)
T 3tzq_B 38 VVLADLP-ETDLAGAAASVGR---GAVHHVVD-----LTNEVSVRALIDFTIDTFGRLDIVDNNAAHS 96 (271)
T ss_dssp EEEEECT-TSCHHHHHHHHCT---TCEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred EEEEcCC-HHHHHHHHHHhCC---CeEEEECC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4444433 3345555555666 77778877 4478888888776543322345666666654
No 367
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=27.22 E-value=1.5e+02 Score=26.54 Aligned_cols=44 Identities=14% Similarity=0.023 Sum_probs=28.5
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| --|.+.+++.+++..++-..+-+++-++|....+.+
T Consensus 82 ~~~~~~~D-----l~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~ 125 (276)
T 3r1i_A 82 KALPIRCD-----VTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAM 125 (276)
T ss_dssp CCEEEECC-----TTCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCG
T ss_pred eEEEEEcC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 77788877 448888888887654332234567777776555544
No 368
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=27.07 E-value=29 Score=33.97 Aligned_cols=29 Identities=7% Similarity=0.044 Sum_probs=19.4
Q ss_pred CccccccCChHHHHHHHHHhCCEEEeecc
Q 041829 243 TTSSTAVDPLLALGNIAKSNGMWFHVDAA 271 (486)
Q Consensus 243 ~t~tG~id~l~~I~~ia~~~g~~lhvD~A 271 (486)
....|..++++++++-||++|+.+++|..
T Consensus 63 dp~~Gt~~df~~lv~~aH~~Gi~VilD~V 91 (441)
T 1lwj_A 63 KAEYGSEREFKEMIEAFHDSGIKVVLDLP 91 (441)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 34556666777777777777777777764
No 369
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}
Probab=27.02 E-value=3.3e+02 Score=27.07 Aligned_cols=59 Identities=14% Similarity=-0.027 Sum_probs=38.6
Q ss_pred HHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC--hHHHHHH
Q 041829 191 ACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP--LLALGNI 258 (486)
Q Consensus 191 a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~--l~~I~~i 258 (486)
.++..|. ++..+.+| .-|.+++++.+++.. +...+-.|+-++|....+.+.+ .+++.++
T Consensus 309 ~l~~~g~---~v~~~~~D-----vtd~~~v~~~~~~i~-~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v 369 (525)
T 3qp9_A 309 ELADLGA---TATVVTCD-----LTDAEAAARLLAGVS-DAHPLSAVLHLPPTVDSEPLAATDADALARV 369 (525)
T ss_dssp HHHHHTC---EEEEEECC-----TTSHHHHHHHHHTSC-TTSCEEEEEECCCCCCCCCTTTCCHHHHHHH
T ss_pred HHHhcCC---EEEEEECC-----CCCHHHHHHHHHHHH-hcCCCcEEEECCcCCCCCchhhCCHHHHHHH
Confidence 3444577 88889887 458999999987754 3334567777777766666643 3444443
No 370
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=27.01 E-value=1.5e+02 Score=26.36 Aligned_cols=44 Identities=16% Similarity=-0.029 Sum_probs=28.3
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.+++.+++..++-..+-+++-++|....+.+
T Consensus 78 ~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~ 121 (280)
T 3pgx_A 78 KALTRVLD-----VRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRV 121 (280)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCG
T ss_pred eEEEEEcC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 77888877 447888888877654332234567777776555544
No 371
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=26.94 E-value=2.4e+02 Score=24.82 Aligned_cols=44 Identities=16% Similarity=0.082 Sum_probs=28.7
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| --|.+.+++.+++..+.-..+-+++-++|....+.+
T Consensus 76 ~~~~~~~D-----l~~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~ 119 (269)
T 3gk3_A 76 DFKAYAVD-----VADFESCERCAEKVLADFGKVDVLINNAGITRDATF 119 (269)
T ss_dssp CCEEEECC-----TTCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCBCT
T ss_pred ceEEEEec-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCcch
Confidence 77888887 347888888777654332234567777776655544
No 372
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=26.64 E-value=30 Score=33.89 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=21.0
Q ss_pred CccccccCChHHHHHHHHHhCCEEEeecc
Q 041829 243 TTSSTAVDPLLALGNIAKSNGMWFHVDAA 271 (486)
Q Consensus 243 ~t~tG~id~l~~I~~ia~~~g~~lhvD~A 271 (486)
.+..|..++++++++-|+++|+.+++|..
T Consensus 77 ~~~~Gt~~~~~~lv~~~h~~Gi~vi~D~V 105 (449)
T 3dhu_A 77 NPEYGTLADFKALTDRAHELGMKVMLDIV 105 (449)
T ss_dssp CGGGCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 34556677777777778888888887764
No 373
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=26.29 E-value=1.2e+02 Score=28.91 Aligned_cols=59 Identities=22% Similarity=0.180 Sum_probs=39.9
Q ss_pred cCHHHHHHHHHHHHhCCCccEEEEEecCCcc-ccccCChHHHHHHHHHhCCEEEeecccc
Q 041829 215 LSPDSLAEAISRDLTIGLIPFFLCATVGTTS-STAVDPLLALGNIAKSNGMWFHVDAAYA 273 (486)
Q Consensus 215 id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~-tG~id~l~~I~~ia~~~g~~lhvD~A~g 273 (486)
-+.+..++-|+...+.|..-++-.+-.+... .-....+++|.++|+++|+.+++|-+-.
T Consensus 14 ~~~~~~~~yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~ 73 (372)
T 2p0o_A 14 EITNDTIIYIKKMKALGFDGIFTSLHIPEDDTSLYRQRLTDLGAIAKAEKMKIMVDISGE 73 (372)
T ss_dssp CCCHHHHHHHHHHHHTTCCEEEEEECCC-----CHHHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 3555566778888888877555444444322 2334678999999999999999996543
No 374
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=26.18 E-value=29 Score=34.36 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=25.3
Q ss_pred CCccccccCChHHHHHHHHHhCCEEEeeccc
Q 041829 242 GTTSSTAVDPLLALGNIAKSNGMWFHVDAAY 272 (486)
Q Consensus 242 ~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~ 272 (486)
..+..|..++++++++-||++|+.+++|...
T Consensus 90 idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~ 120 (478)
T 2guy_A 90 LNENYGTADDLKALSSALHERGMYLMVDVVA 120 (478)
T ss_dssp ECTTSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCccCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 4566788888899999999999999999754
No 375
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=26.16 E-value=2.5e+02 Score=24.68 Aligned_cols=40 Identities=5% Similarity=-0.154 Sum_probs=25.1
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTS 245 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~ 245 (486)
++..+++| .-|.+.+++.+++..+.-..+-+++-++|...
T Consensus 65 ~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~ 104 (267)
T 1iy8_A 65 EVLTTVAD-----VSDEAQVEAYVTATTERFGRIDGFFNNAGIEG 104 (267)
T ss_dssp CEEEEECC-----TTSHHHHHHHHHHHHHHHSCCSEEEECCCCCC
T ss_pred eEEEEEcc-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC
Confidence 77888877 34788888887764432222446666666543
No 376
>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A
Probab=26.12 E-value=4.4e+02 Score=25.21 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCC
Q 041829 188 LQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGT 243 (486)
Q Consensus 188 ~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~ 243 (486)
+.+.++..|. ....+++| ..|.+..++.+++-.+.....-++|-+.+.
T Consensus 103 ~~~~i~~~G~---~a~~i~~D-----v~d~e~i~~vi~~i~~~~G~IDiLVhS~A~ 150 (401)
T 4ggo_A 103 FDEAAKREGL---YSVTIDGD-----AFSDEIKAQVIEEAKKKGIKFDLIVYSLAS 150 (401)
T ss_dssp HHHHHHHHTC---CEEEEESC-----TTSHHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred HHHHHHHcCC---CceeEeCC-----CCCHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 5567778899 99999998 568899999888776654445556655544
No 377
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=26.08 E-value=1.7e+02 Score=20.52 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=41.9
Q ss_pred CCeEEEecCCCchh--HHHHHHHhCCCCCCeEEEeCCCCCCCccCHHH---HHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 174 EKLVVYASDQTHSA--LQKACQIGGIHPQNFRVLKTDSSTNYSLSPDS---LAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 174 ~~~~v~~s~~~H~s--~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~---L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
.+.++|....+.++ +...+..+|+ ....++++. .+.+. +...+.+.......|.+++ -+....|
T Consensus 12 ~~v~ly~~~~Cp~C~~~~~~L~~~gi---~~~~~~v~~-----~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~i~G- 80 (92)
T 3ic4_A 12 AEVLMYGLSTCPHCKRTLEFLKREGV---DFEVIWIDK-----LEGEERKKVIEKVHSISGSYSVPVVVK--GDKHVLG- 80 (92)
T ss_dssp SSSEEEECTTCHHHHHHHHHHHHHTC---CCEEEEGGG-----CCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEEEES-
T ss_pred ceEEEEECCCChHHHHHHHHHHHcCC---CcEEEEeee-----CCccchHHHHHHHHHhcCCCCcCEEEE--CCEEEeC-
Confidence 45678877777766 4456666788 888888863 23322 2233433334456787655 3443333
Q ss_pred cCChHHHHHHH
Q 041829 249 VDPLLALGNIA 259 (486)
Q Consensus 249 id~l~~I~~ia 259 (486)
+ +-++|.++.
T Consensus 81 ~-~~~~l~~~l 90 (92)
T 3ic4_A 81 Y-NEEKLKELI 90 (92)
T ss_dssp C-CHHHHHHHH
T ss_pred C-CHHHHHHHh
Confidence 3 456665543
No 378
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=26.08 E-value=2.3e+02 Score=26.31 Aligned_cols=50 Identities=12% Similarity=-0.053 Sum_probs=32.0
Q ss_pred HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 192 CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 192 ~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
.+..|. ++..+.+| .-|.+.+++++++..+.-..+-++|-++|....+.+
T Consensus 96 ~~~~g~---~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~ 145 (346)
T 3kvo_A 96 IEAVGG---KALPCIVD-----VRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNT 145 (346)
T ss_dssp HHHTTC---EEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCT
T ss_pred HHhcCC---eEEEEEcc-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 344455 78888877 448888888887655432235567777776554444
No 379
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=26.07 E-value=2.9e+02 Score=23.80 Aligned_cols=43 Identities=9% Similarity=0.144 Sum_probs=27.2
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
++..+++| --|.+.+++.+++..+....+-+++-++|....+.
T Consensus 55 ~~~~~~~D-----~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~ 97 (246)
T 2uvd_A 55 DAIAVRAD-----VANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNL 97 (246)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBC
T ss_pred cEEEEEcC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 77788877 44788888887765433223456777777654443
No 380
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=26.01 E-value=2e+02 Score=23.96 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=37.5
Q ss_pred hhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhC-CCccEEEEEecCCccccccCChHHHH
Q 041829 186 SALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTI-GLIPFFLCATVGTTSSTAVDPLLALG 256 (486)
Q Consensus 186 ~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~-g~~p~~vv~~~~~t~tG~id~l~~I~ 256 (486)
+.+...++.+|. +++...+-+| |++.++++|++..++ +. -+|+.| |-+..|.-|-..+..
T Consensus 43 ~~L~~~l~~~G~---~v~~~~iv~D-----d~~~I~~al~~a~~~~~~--DlVitt-GG~s~g~~D~t~eal 103 (178)
T 2pjk_A 43 DIIKQLLIENGH---KIIGYSLVPD-----DKIKILKAFTDALSIDEV--DVIIST-GGTGYSPTDITVETI 103 (178)
T ss_dssp HHHHHHHHHTTC---EEEEEEEECS-----CHHHHHHHHHHHHTCTTC--CEEEEE-SCCSSSTTCCHHHHH
T ss_pred HHHHHHHHHCCC---EEEEEEEeCC-----CHHHHHHHHHHHHhcCCC--CEEEEC-CCCCCCCCcchHHHH
Confidence 446666777888 7777665444 788999999876543 21 245544 444556666655443
No 381
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=25.95 E-value=3.4e+02 Score=23.87 Aligned_cols=44 Identities=14% Similarity=-0.024 Sum_probs=28.0
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCC-CccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIG-LIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g-~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.+++++++..+.- ..+-+++-++|....+.+
T Consensus 71 ~~~~~~~D-----~~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 115 (273)
T 1ae1_A 71 NVEGSVCD-----LLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEA 115 (273)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHTTSCCCEEEECCCCCCCCCT
T ss_pred ceEEEECC-----CCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCCCCh
Confidence 77788877 447888888877654432 234567777776554443
No 382
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=25.84 E-value=2.4e+02 Score=24.25 Aligned_cols=69 Identities=7% Similarity=-0.025 Sum_probs=42.9
Q ss_pred HHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhC----
Q 041829 188 LQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNG---- 263 (486)
Q Consensus 188 ~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g---- 263 (486)
+....+..|. +++.+.. .+.++.+.+++.+.. |-+|.++.....+...+.+.++.+.+++.|
T Consensus 112 v~~~l~~~G~---~Vi~LG~------~vp~e~iv~~~~~~~-----~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~ 177 (215)
T 3ezx_A 112 VTTMLGANGF---QIVDLGV------DVLNENVVEEAAKHK-----GEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDS 177 (215)
T ss_dssp HHHHHHHTSC---EEEECCS------SCCHHHHHHHHHHTT-----TSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHCCC---eEEEcCC------CCCHHHHHHHHHHcC-----CCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCC
Confidence 3345556688 7765543 467888877776643 345665222333456677899999888875
Q ss_pred CEEEeec
Q 041829 264 MWFHVDA 270 (486)
Q Consensus 264 ~~lhvD~ 270 (486)
+.+.+=|
T Consensus 178 v~v~vGG 184 (215)
T 3ezx_A 178 VKCMFGG 184 (215)
T ss_dssp SEEEEES
T ss_pred CEEEEEC
Confidence 4565544
No 383
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=25.81 E-value=2.6e+02 Score=23.17 Aligned_cols=59 Identities=14% Similarity=-0.003 Sum_probs=35.3
Q ss_pred hhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHH
Q 041829 186 SALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALG 256 (486)
Q Consensus 186 ~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~ 256 (486)
+.+.+.+..+|+ ++..+.+-+| |.+.+++++++..++ .-+|+.|.|+ ..|.-|=..+..
T Consensus 26 ~~l~~~L~~~G~---~v~~~~iv~D-----d~~~I~~~l~~a~~~---~DlVittGG~-g~~~~D~T~ea~ 84 (172)
T 3kbq_A 26 AFIGNFLTYHGY---QVRRGFVVMD-----DLDEIGWAFRVALEV---SDLVVSSGGL-GPTFDDMTVEGF 84 (172)
T ss_dssp HHHHHHHHHTTC---EEEEEEEECS-----CHHHHHHHHHHHHHH---CSEEEEESCC-SSSTTCCHHHHH
T ss_pred HHHHHHHHHCCC---EEEEEEEeCC-----CHHHHHHHHHHHHhc---CCEEEEcCCC-cCCcccchHHHH
Confidence 345566677788 7777665444 788888888765432 1255555554 445555555444
No 384
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=25.80 E-value=3.5e+02 Score=23.98 Aligned_cols=79 Identities=13% Similarity=0.142 Sum_probs=53.4
Q ss_pred CchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccc--cccCChHHHHHHHHH
Q 041829 184 THSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSS--TAVDPLLALGNIAKS 261 (486)
Q Consensus 184 ~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~t--G~id~l~~I~~ia~~ 261 (486)
....+.+.|+-+|+ ..+.|.. +...|+.+...+.|+...+.|.+ |....|.-.. ....+..++.+.+++
T Consensus 86 ~~~~yl~~~k~lGf---~~iEiS~---G~i~l~~~~~~~~I~~~~~~G~~---v~~EvG~k~~~~~~~~~~~~~I~~~~~ 156 (251)
T 1qwg_A 86 KFDEFLNECEKLGF---EAVEISD---GSSDISLEERNNAIKRAKDNGFM---VLTEVGKKMPDKDKQLTIDDRIKLINF 156 (251)
T ss_dssp CHHHHHHHHHHHTC---CEEEECC---SSSCCCHHHHHHHHHHHHHTTCE---EEEEECCSSHHHHTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCC---CEEEECC---CcccCCHHHHHHHHHHHHHCCCE---EeeeccccCCcccCCCCHHHHHHHHHH
Confidence 33456788999999 8888864 34578999999999998888854 3444444333 445566777777665
Q ss_pred ---hCCEEEeecc
Q 041829 262 ---NGMWFHVDAA 271 (486)
Q Consensus 262 ---~g~~lhvD~A 271 (486)
.|+|.++=.|
T Consensus 157 ~LeAGA~~ViiEa 169 (251)
T 1qwg_A 157 DLDAGADYVIIEG 169 (251)
T ss_dssp HHHHTCSEEEECC
T ss_pred HHHCCCcEEEEee
Confidence 4887544433
No 385
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=25.80 E-value=63 Score=28.68 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=27.7
Q ss_pred cEEEEEecCCccccccCChHHHHHHHHHhCCEEEeecc
Q 041829 234 PFFLCATVGTTSSTAVDPLLALGNIAKSNGMWFHVDAA 271 (486)
Q Consensus 234 p~~vv~~~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A 271 (486)
-.+|++|-|.+..|. +|+ +.+++++++|+.+|+=|.
T Consensus 11 k~iillTDG~~~~g~-~p~-~aa~~a~~~gi~v~tIGi 46 (242)
T 3rag_A 11 RQILVITDGCSNIGP-DPV-EAARRAHRHGIVVNVIGI 46 (242)
T ss_dssp EEEEEEESSCCCSSS-CHH-HHHHHHHHTTCEEEEEEE
T ss_pred cEEEEEccCCCCCCC-CHH-HHHHHHHHCCCEEEEEEe
Confidence 467888889888886 776 556789999999876543
No 386
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=25.72 E-value=32 Score=34.65 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=18.2
Q ss_pred ccccccCChHHHHHHHHHhCCEEEeec
Q 041829 244 TSSTAVDPLLALGNIAKSNGMWFHVDA 270 (486)
Q Consensus 244 t~tG~id~l~~I~~ia~~~g~~lhvD~ 270 (486)
...|..++++++++-||++|+.+++|.
T Consensus 87 p~~Gt~~dfk~Lv~~aH~~GI~VilD~ 113 (527)
T 1gcy_A 87 GRYGSDAQLRQAASALGGAGVKVLYDV 113 (527)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 455666667777777777777777774
No 387
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=25.70 E-value=3e+02 Score=23.75 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=25.3
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTS 245 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~ 245 (486)
++..+..| .-|.+.+++++++..+....+-+|+-+++...
T Consensus 63 ~~~~~~~D-----~~~~~~~~~~~~~~~~~~~~id~vi~~Ag~~~ 102 (260)
T 3awd_A 63 DVSSVVMD-----VTNTESVQNAVRSVHEQEGRVDILVACAGICI 102 (260)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred ceEEEEec-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 77888877 44788888887764332223456777776543
No 388
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=25.70 E-value=1.8e+02 Score=25.52 Aligned_cols=38 Identities=16% Similarity=0.006 Sum_probs=24.7
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCC
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGT 243 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~ 243 (486)
++..+.+| .-|.+.+++.+++..+....+-+|+-++|.
T Consensus 79 ~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 79 EAESHACD-----LSHSDAIAAFATGVLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp EEEEEECC-----TTCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred ceeEEEec-----CCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 77778877 347888888777654332234567777765
No 389
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=25.33 E-value=32 Score=33.26 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=23.4
Q ss_pred ccccccCChHHHHHHHHHhCCEEEeeccc
Q 041829 244 TSSTAVDPLLALGNIAKSNGMWFHVDAAY 272 (486)
Q Consensus 244 t~tG~id~l~~I~~ia~~~g~~lhvD~A~ 272 (486)
+..|..++++++++-||++|+.+++|..+
T Consensus 63 ~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~ 91 (405)
T 1ht6_A 63 SKYGNAAELKSLIGALHGKGVQAIADIVI 91 (405)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 45677888888888888888888888754
No 390
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=25.17 E-value=2.7e+02 Score=24.33 Aligned_cols=44 Identities=11% Similarity=-0.036 Sum_probs=28.7
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 62 ~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 105 (256)
T 3gaf_A 62 KAIGLECN-----VTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPF 105 (256)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCT
T ss_pred cEEEEECC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCC
Confidence 78888887 447888888877654432235567777776554443
No 391
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=25.10 E-value=2.9e+02 Score=24.45 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=25.4
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+..|- -|.+.+++.++...+.| .+-+++-++|....+.+
T Consensus 83 ~~~~~~~Dv-----~~~~~~~~~~~~~~~~g-~iD~lvnnAg~~~~~~~ 125 (275)
T 4imr_A 83 TAQELAGDL-----SEAGAGTDLIERAEAIA-PVDILVINASAQINATL 125 (275)
T ss_dssp CEEEEECCT-----TSTTHHHHHHHHHHHHS-CCCEEEECCCCCCCBCG
T ss_pred eEEEEEecC-----CCHHHHHHHHHHHHHhC-CCCEEEECCCCCCCCCc
Confidence 788888774 35556666655443333 34567777776554444
No 392
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=25.10 E-value=1.8e+02 Score=25.75 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=28.2
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.+++.+++..+.-..+-+++-++|....+.+
T Consensus 74 ~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~ 117 (277)
T 3tsc_A 74 RIVAAVVD-----TRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAW 117 (277)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred eEEEEECC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCh
Confidence 77888877 447888888877654432234567777776555443
No 393
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=24.99 E-value=80 Score=28.63 Aligned_cols=39 Identities=15% Similarity=0.053 Sum_probs=23.1
Q ss_pred HHHHHhCCCCCCeEEEeCCCCCCCc-cCHHHHHHHHHHHHhCC
Q 041829 190 KACQIGGIHPQNFRVLKTDSSTNYS-LSPDSLAEAISRDLTIG 231 (486)
Q Consensus 190 ~a~~~~g~g~~~v~~v~~~~~~~~~-id~~~L~~~i~~~~~~g 231 (486)
+.++-+|+ +++++|+.....|. -..+.|++.++...+.|
T Consensus 38 ~~i~~~G~---N~VRi~~~~~~~~~~~~~~~ld~~v~~a~~~G 77 (294)
T 2whl_A 38 PAIAEQGA---NTIRIVLSDGGQWEKDDIDTIREVIELAEQNK 77 (294)
T ss_dssp HHHHHTTC---SEEEEEECCSSSSCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHcCC---CEEEEEecCCCccCccHHHHHHHHHHHHHHCC
Confidence 44556788 99999986321121 23556666666666555
No 394
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=24.99 E-value=2.1e+02 Score=25.13 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=28.8
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| --|.+.+++.+++..+....+-.++-++|....+.+
T Consensus 77 ~~~~~~~D-----l~~~~~~~~~~~~~~~~~g~id~li~nAg~~~~~~~ 120 (267)
T 4iiu_A 77 NGRLLSFD-----VANREQCREVLEHEIAQHGAWYGVVSNAGIARDAAF 120 (267)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHCCCSEEEECCCCCCCCCG
T ss_pred ceEEEEec-----CCCHHHHHHHHHHHHHHhCCccEEEECCCCCCCCcc
Confidence 78888887 447888888887654432234567777776555544
No 395
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=24.88 E-value=2.3e+02 Score=25.82 Aligned_cols=45 Identities=18% Similarity=0.070 Sum_probs=29.9
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD 250 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id 250 (486)
++..+.+| .-|.+.+++.+++..+.-..+-++|-++|....+.+.
T Consensus 108 ~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~ 152 (317)
T 3oec_A 108 RIIARQAD-----VRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVV 152 (317)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTT
T ss_pred eEEEEECC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcc
Confidence 78888887 4478888888776544322355677777766655543
No 396
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=24.82 E-value=3.3e+02 Score=24.30 Aligned_cols=87 Identities=8% Similarity=-0.018 Sum_probs=54.4
Q ss_pred EEecCCCch-hHHHHHHHhCCCCCCe-EEEeCCCCC-------C----CccCHHHHHHHHHHHHhCCCccEEEEEecCCc
Q 041829 178 VYASDQTHS-ALQKACQIGGIHPQNF-RVLKTDSST-------N----YSLSPDSLAEAISRDLTIGLIPFFLCATVGTT 244 (486)
Q Consensus 178 v~~s~~~H~-s~~~a~~~~g~g~~~v-~~v~~~~~~-------~----~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t 244 (486)
.+.+...|. .+.+.++..|- ++ +-+|..+.+ . -.++.+++++.|+...+.-..-+.|.=-.|+-
T Consensus 60 Ai~P~~p~~~~~a~~A~~~G~---EvllHlPMep~~~p~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a~GvnNHmGS~ 136 (261)
T 2qv5_A 60 GFAASGNSLQRWMQDARREGH---EILLQIPLEPFGYPGTNPGPDTLLAGDPAKVNIDRLHRSMAKITNYTGVMNYLGGR 136 (261)
T ss_dssp EEETTCSSHHHHHHHHHHHTC---CEEEEEEECCTTTTTSCCCTTCBCTTSCHHHHHHHHHHHHTTCCCCSEEEEEECTT
T ss_pred EECCCCCCHHHHHHHHHHCCC---EEEEECCCCCCCCCCCCCCcCcCcCCCCHHHHHHHHHHHHHHCCCcEEEecccccc
Confidence 344544443 35566666776 54 445655432 0 13789999999998776532222333233666
Q ss_pred cccccCChHHHHHHHHHhCCEEE
Q 041829 245 SSTAVDPLLALGNIAKSNGMWFH 267 (486)
Q Consensus 245 ~tG~id~l~~I~~ia~~~g~~lh 267 (486)
.|..-..++.+.++++++|++|+
T Consensus 137 ~T~~~~~M~~vm~~L~~~gL~Fl 159 (261)
T 2qv5_A 137 FLAEQSALEPVMRDIGKRGLLFL 159 (261)
T ss_dssp GGGCHHHHHHHHHHHHHTTCEEE
T ss_pred hhcCHHHHHHHHHHHHHCCCEEE
Confidence 66666778999999999998875
No 397
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=24.79 E-value=2.4e+02 Score=24.83 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=31.5
Q ss_pred HHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 193 QIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 193 ~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
+..|. ++..+++| .-|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 75 ~~~~~---~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~ 123 (271)
T 4iin_A 75 EEKGY---KAAVIKFD-----AASESDFIEAIQTIVQSDGGLSYLVNNAGVVRDKLA 123 (271)
T ss_dssp HHTTC---CEEEEECC-----TTCHHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCG
T ss_pred HhcCC---ceEEEECC-----CCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCccc
Confidence 33455 78888887 447888888777654432235577777776655544
No 398
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=24.68 E-value=2.8e+02 Score=24.19 Aligned_cols=39 Identities=15% Similarity=0.032 Sum_probs=24.9
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTT 244 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t 244 (486)
++..+++| .-|.+.+++.+++..+.-..+-+++-++|..
T Consensus 57 ~~~~~~~D-----~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~ 95 (262)
T 1zem_A 57 EARSYVCD-----VTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQ 95 (262)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred cEEEEEec-----CCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 77888877 3478888887776543212345677777654
No 399
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=24.44 E-value=2.6e+02 Score=24.03 Aligned_cols=54 Identities=9% Similarity=0.199 Sum_probs=32.5
Q ss_pred eEEcCchhHHHHHHHHHHHHHHHHHhCccCC-CCeEEEecCCCchhHHHHHHHhCCCCCCeEEEeC
Q 041829 143 GVIQGTASEAVLVVLLAARDKALKRVGKNSL-EKLVVYASDQTHSALQKACQIGGIHPQNFRVLKT 207 (486)
Q Consensus 143 ~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~-~~~~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~ 207 (486)
+++.| |+-+|+.+|.-+... ... .+.+.++++..-..+.+.|+..|+ .+..++.
T Consensus 6 avl~S-g~Gsnl~ali~~~~~-------~~l~~eI~~Visn~~~a~v~~~A~~~gI---p~~~~~~ 60 (211)
T 3p9x_A 6 AIFAS-GSGTNAEAIIQSQKA-------GQLPCEVALLITDKPGAKVVERVKVHEI---PVCALDP 60 (211)
T ss_dssp EEECC-TTCHHHHHHHHHHHT-------TCCSSEEEEEEESCSSSHHHHHHHTTTC---CEEECCG
T ss_pred EEEEe-CCchHHHHHHHHHHc-------CCCCcEEEEEEECCCCcHHHHHHHHcCC---CEEEeCh
Confidence 34444 345788888765431 011 234556665555567788889999 7776653
No 400
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=24.34 E-value=34 Score=34.38 Aligned_cols=31 Identities=13% Similarity=-0.010 Sum_probs=23.7
Q ss_pred CCccccccCChHHHHHHHHHhCCEEEeeccc
Q 041829 242 GTTSSTAVDPLLALGNIAKSNGMWFHVDAAY 272 (486)
Q Consensus 242 ~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~ 272 (486)
.....|..++++++++-||++|+.|++|..+
T Consensus 72 vdp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 102 (549)
T 4aie_A 72 IDPQYGTMADMDELISKAKEHHIKIVMDLVV 102 (549)
T ss_dssp ECTTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 3456677788888888888888888888654
No 401
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=24.26 E-value=3.3e+02 Score=24.36 Aligned_cols=39 Identities=10% Similarity=0.001 Sum_probs=25.4
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTT 244 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t 244 (486)
++..+.+| .-|.+.+++.+++..++...+-+++-+++..
T Consensus 98 ~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~ 136 (291)
T 3ijr_A 98 KCVLLPGD-----LSDEQHCKDIVQETVRQLGSLNILVNNVAQQ 136 (291)
T ss_dssp CEEEEESC-----TTSHHHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred cEEEEECC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCc
Confidence 88888887 4488888888776544322344666666543
No 402
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=24.17 E-value=2.6e+02 Score=21.95 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=38.4
Q ss_pred CCeEEEec-----CCCchh--HHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccc
Q 041829 174 EKLVVYAS-----DQTHSA--LQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSS 246 (486)
Q Consensus 174 ~~~~v~~s-----~~~H~s--~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~t 246 (486)
.+.+||.. ..+.+| +.+.+...|+ ....++++. |+ .+.+.+.+.......|.++ .-| ...
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv---~y~~vdI~~------d~-~~~~~L~~~~G~~tvP~Vf--I~G-~~i 101 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGE---RFAYVDILQ------NP-DIRAELPKYANWPTFPQLW--VDG-ELV 101 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCS---CCEEEEGGG------CH-HHHHHHHHHHTCCSSCEEE--ETT-EEE
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCC---ceEEEECCC------CH-HHHHHHHHHHCCCCcCEEE--ECC-EEE
Confidence 56777776 455554 3445556677 788888763 33 3455555544444456432 233 345
Q ss_pred cccCChHH
Q 041829 247 TAVDPLLA 254 (486)
Q Consensus 247 G~id~l~~ 254 (486)
|..|++.+
T Consensus 102 GG~d~l~~ 109 (135)
T 2wci_A 102 GGCDIVIE 109 (135)
T ss_dssp ESHHHHHH
T ss_pred EChHHHHH
Confidence 66676653
No 403
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=24.05 E-value=1.7e+02 Score=26.78 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=30.3
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.++++++...+....+-+++-++|....+.+
T Consensus 60 ~~~~~~~D-----l~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 103 (319)
T 3ioy_A 60 EVMGVQLD-----VASREGFKMAADEVEARFGPVSILCNNAGVNLFQPI 103 (319)
T ss_dssp GEEEEECC-----TTCHHHHHHHHHHHHHHTCCEEEEEECCCCCCCCCG
T ss_pred eEEEEECC-----CCCHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCCc
Confidence 67778877 458888888887765543346678888876555544
No 404
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}
Probab=23.95 E-value=2.2e+02 Score=24.82 Aligned_cols=43 Identities=12% Similarity=-0.055 Sum_probs=26.8
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
++..+++| .-|.+.+++.+++..+.-..+-+++-++|....+.
T Consensus 54 ~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~ 96 (258)
T 3a28_C 54 KAVFVGLD-----VTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKP 96 (258)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCC
T ss_pred cEEEEEcc-----CCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 78888877 44788888877664432223456777776554443
No 405
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=23.88 E-value=2.2e+02 Score=21.03 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=41.6
Q ss_pred CCeEEEecCCCchh--HHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCC
Q 041829 174 EKLVVYASDQTHSA--LQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDP 251 (486)
Q Consensus 174 ~~~~v~~s~~~H~s--~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~ 251 (486)
.+.++|....+.+| +......+|+ ....++++.. .-+-+.+.+.+.+.......|.+.+ .| ...|..|+
T Consensus 19 ~~v~vy~~~~Cp~C~~~~~~L~~~~i---~~~~~di~~~---~~~~~~~~~~l~~~~g~~tvP~ifi--~g-~~igG~~~ 89 (113)
T 3rhb_A 19 NTVVIYSKTWCSYCTEVKTLFKRLGV---QPLVVELDQL---GPQGPQLQKVLERLTGQHTVPNVFV--CG-KHIGGCTD 89 (113)
T ss_dssp SSEEEEECTTCHHHHHHHHHHHHTTC---CCEEEEGGGS---TTHHHHHHHHHHHHHSCCSSCEEEE--TT-EEEESHHH
T ss_pred CCEEEEECCCChhHHHHHHHHHHcCC---CCeEEEeecC---CCChHHHHHHHHHHhCCCCcCEEEE--CC-EEEcCcHH
Confidence 56777777766665 3445566788 7788887632 1134556666766544455675432 23 34455555
Q ss_pred hHH
Q 041829 252 LLA 254 (486)
Q Consensus 252 l~~ 254 (486)
+.+
T Consensus 90 ~~~ 92 (113)
T 3rhb_A 90 TVK 92 (113)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 406
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A*
Probab=23.87 E-value=1.6e+02 Score=27.39 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCCCCeEEEeCCCCC------CCccCH---HHHHHHHHHHHhCC
Q 041829 188 LQKACQIGGIHPQNFRVLKTDSST------NYSLSP---DSLAEAISRDLTIG 231 (486)
Q Consensus 188 ~~~a~~~~g~g~~~v~~v~~~~~~------~~~id~---~~L~~~i~~~~~~g 231 (486)
-.+.++-.|+ +.++||+.... .+.+|. +.|++.|+...+.|
T Consensus 47 di~~i~~~G~---n~vRipi~w~~~~~~~~~~~~~~~~l~~l~~~v~~a~~~G 96 (345)
T 3ndz_A 47 MINKIKEAGF---NTLRLPVTWDGHMGAAPEYTIDQTWMKRVEEIANYAFDND 96 (345)
T ss_dssp HHHHHHHHTC---CEEEECCCCTTSBCCTTTCCBCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCCC---CEEEEeeehHHhCCCCCCCccCHHHHHHHHHHHHHHHHCC
Confidence 3445567799 99999986431 234442 44445555555555
No 407
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=23.75 E-value=1.8e+02 Score=25.48 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=25.0
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecC
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVG 242 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~ 242 (486)
++..+.+| --|.+.+++.+++..+....+-+++-++|
T Consensus 58 ~~~~~~~D-----l~~~~~v~~~~~~~~~~~g~id~lv~~Ag 94 (264)
T 3i4f_A 58 RLQFVQAD-----VTKKEDLHKIVEEAMSHFGKIDFLINNAG 94 (264)
T ss_dssp GEEEEECC-----TTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred ceEEEEec-----CCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 78888887 44788888888765443223556777776
No 408
>2llz_A Uncharacterized protein YJDK; RNAse, biofilm, unknown function; NMR {Escherichia coli}
Probab=23.70 E-value=93 Score=23.11 Aligned_cols=64 Identities=9% Similarity=-0.054 Sum_probs=37.5
Q ss_pred ceEEEEEecCCCCCcccchHHHHHHHHHHHccCcEEEEeeeECCE----eEEEEEecCCCCCHHHHHHHHHHHHHH
Q 041829 404 FSLVCFRLLPPHNDEDHGNKLNHKLLDDINSTGKIFISHTVLSGK----YILRFAVGAPLTEWRHVNAAWEVMQDK 475 (486)
Q Consensus 404 ~~~v~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~----~~lRi~~~~~~~t~~di~~~~~~l~~~ 475 (486)
..+|.|+|.+.+ .....+|...|.+.| +..+-+.-.|. +.-.+++ ....+++||++++..+.+.
T Consensus 11 ~YVVTf~y~e~~------Lt~~~eL~~~lt~aG-F~ttl~D~~G~pHeLgtNsFgl-iS~l~~~ev~~La~~L~e~ 78 (100)
T 2llz_A 11 TYVVSFDYPSSY------SSVFLRLRSLMYDMN-FSSIVADEYGIPRQLNENSFAI-TTSLAASEIEDLIRLKCLD 78 (100)
T ss_dssp CEEEEEECCGGG------HHHHHHHHHHHHHTT-EESEEECSSSCEEECTTTEEEE-CCCSCHHHHHHHHHHGGGT
T ss_pred EEEEEEEecccc------hHHHHHHHHHHHhCC-ceeEeecCCCCceeccccceee-eccCCHHHHHHHHHHHHHh
Confidence 458889986533 333356777777777 33333322221 1223444 3345899999999887543
No 409
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=23.68 E-value=99 Score=28.10 Aligned_cols=19 Identities=11% Similarity=-0.062 Sum_probs=13.9
Q ss_pred HHHHHHHhCCCCCCeEEEeCCC
Q 041829 188 LQKACQIGGIHPQNFRVLKTDS 209 (486)
Q Consensus 188 ~~~a~~~~g~g~~~v~~v~~~~ 209 (486)
..+.++-+|+ +++++|+..
T Consensus 37 ~~~~lk~~G~---N~VRi~~~~ 55 (302)
T 1bqc_A 37 AFADIKSHGA---NTVRVVLSN 55 (302)
T ss_dssp HHHHHHHTTC---SEEEEEECC
T ss_pred HHHHHHHcCC---CEEEEEccC
Confidence 3445566899 999999864
No 410
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=23.56 E-value=34 Score=33.97 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=18.8
Q ss_pred CccccccCChHHHHHHHHHhCCEEEeecc
Q 041829 243 TTSSTAVDPLLALGNIAKSNGMWFHVDAA 271 (486)
Q Consensus 243 ~t~tG~id~l~~I~~ia~~~g~~lhvD~A 271 (486)
....|..++++++++-||++|+.+++|..
T Consensus 75 dp~~Gt~~d~~~Lv~~aH~~Gi~VilD~V 103 (488)
T 1wza_A 75 NPDYGTLEDFHKLVEAAHQRGIKVIIDLP 103 (488)
T ss_dssp CGGGCCHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 34456666666677777777777777754
No 411
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=23.52 E-value=86 Score=28.48 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=19.2
Q ss_pred ccCChHHHHHHHHHhCCEEEeec
Q 041829 248 AVDPLLALGNIAKSNGMWFHVDA 270 (486)
Q Consensus 248 ~id~l~~I~~ia~~~g~~lhvD~ 270 (486)
..+.++++.++|+++|+.+++|-
T Consensus 88 ~~~~~d~~~~~a~~~Gi~vil~~ 110 (351)
T 3vup_A 88 MLDDMKDLLDTAKKYNILVFPCL 110 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEe
Confidence 34568999999999999998774
No 412
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=23.49 E-value=2.6e+02 Score=24.44 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=26.5
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| --|.+.+++.+++..++-..+-+++-++|....+.+
T Consensus 54 ~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~ 97 (260)
T 1nff_A 54 AARYVHLD-----VTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTI 97 (260)
T ss_dssp GEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCT
T ss_pred CceEEEec-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCh
Confidence 46667776 347888888877544321234567777775554433
No 413
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=23.36 E-value=1.6e+02 Score=29.31 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCCCCeEEEeCCCCC------CCccCH---HHHHHHHHHHHhCC
Q 041829 188 LQKACQIGGIHPQNFRVLKTDSST------NYSLSP---DSLAEAISRDLTIG 231 (486)
Q Consensus 188 ~~~a~~~~g~g~~~v~~v~~~~~~------~~~id~---~~L~~~i~~~~~~g 231 (486)
..+.++-+|+ +.++||+.... .+.+|. +.+++.|+...+.|
T Consensus 50 di~~i~~~G~---N~vRipi~w~~~~~~~~~~~~~~~~l~~~d~vv~~a~~~G 99 (515)
T 3icg_A 50 MINKIKEAGF---NTLRLPVTWDGHMGAAPEYTIDQTWMKRVEEIANYAFDND 99 (515)
T ss_dssp HHHHHHHHTC---CEEEECCCCTTSBCCTTTCCBCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCCC---CEEEEccchHHhCCCCCCCccCHHHHHHHHHHHHHHHHCC
Confidence 3445567799 99999987431 234443 34445555555555
No 414
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2
Probab=23.32 E-value=3.6e+02 Score=23.26 Aligned_cols=43 Identities=14% Similarity=-0.019 Sum_probs=28.5
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
++..+.+| --|.+.+++.+++..+....+-+|+-+++....+.
T Consensus 65 ~~~~~~~D-----l~~~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~ 107 (265)
T 1h5q_A 65 KTKAYQCD-----VSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKP 107 (265)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHSCSEEEEEECCCCCCCSC
T ss_pred eeEEEEee-----CCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCc
Confidence 77888877 44788888888765443334566777777654443
No 415
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*
Probab=23.28 E-value=2.8e+02 Score=24.38 Aligned_cols=44 Identities=16% Similarity=-0.012 Sum_probs=25.8
Q ss_pred CeEEEeCCCCCCCccCH----HHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSP----DSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~----~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+..|-. |. +.+++.+++..+....+-+++-++|....+.+
T Consensus 63 ~~~~~~~Dl~-----~~~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 110 (276)
T 1mxh_A 63 SAVLCKGDLS-----LSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPL 110 (276)
T ss_dssp CEEEEECCCS-----SSTTHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCS
T ss_pred ceEEEeccCC-----CccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCc
Confidence 7778887742 45 77777766543322234567777775544444
No 416
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=23.27 E-value=34 Score=33.78 Aligned_cols=15 Identities=13% Similarity=0.209 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhCC
Q 041829 217 PDSLAEAISRDLTIG 231 (486)
Q Consensus 217 ~~~L~~~i~~~~~~g 231 (486)
.++|++.+++..++|
T Consensus 96 ~~df~~lv~~~h~~G 110 (475)
T 2z1k_A 96 NEALRHLLEVAHAHG 110 (475)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 455555555555554
No 417
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=23.22 E-value=40 Score=31.06 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=29.8
Q ss_pred CccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHH
Q 041829 213 YSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKS 261 (486)
Q Consensus 213 ~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~ 261 (486)
+.+|.+.+++.++...+.|-.-+++..|.|...+=..+.-.++.+.+.+
T Consensus 16 g~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~ 64 (297)
T 2rfg_A 16 GQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAE 64 (297)
T ss_dssp TEECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHH
Confidence 4888888888888777777554444444444444444555566665554
No 418
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=23.18 E-value=36 Score=33.20 Aligned_cols=30 Identities=13% Similarity=0.054 Sum_probs=18.9
Q ss_pred CccccccCChHHHHHHHHHhCCEEEeeccc
Q 041829 243 TTSSTAVDPLLALGNIAKSNGMWFHVDAAY 272 (486)
Q Consensus 243 ~t~tG~id~l~~I~~ia~~~g~~lhvD~A~ 272 (486)
....|..++++++++-||++|+.+++|..+
T Consensus 75 dp~~Gt~~d~~~lv~~ah~~Gi~vilD~V~ 104 (424)
T 2dh2_A 75 DPNFGSKEDFDSLLQSAKKKSIRVILDLTP 104 (424)
T ss_dssp CGGGCCHHHHHHHHHHHHHTTCEEEEECCT
T ss_pred CccCCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 445566666666666666666666666543
No 419
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=23.14 E-value=3.5e+02 Score=23.05 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=27.5
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
++..+..| --|.+.+++++++..+.-..+-+|+-+++....+.
T Consensus 58 ~~~~~~~D-----~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~ 100 (248)
T 2pnf_A 58 KAHGVEMN-----LLSEESINKAFEEIYNLVDGIDILVNNAGITRDKL 100 (248)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHSSCCSEEEECCCCCCCCC
T ss_pred ceEEEEcc-----CCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCc
Confidence 77788876 34888888888765433223456777776554443
No 420
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=23.05 E-value=3.4e+02 Score=23.91 Aligned_cols=44 Identities=9% Similarity=-0.067 Sum_probs=28.9
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| --|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 72 ~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~ 115 (281)
T 3s55_A 72 RCISAKVD-----VKDRAALESFVAEAEDTLGGIDIAITNAGISTIALL 115 (281)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCT
T ss_pred eEEEEeCC-----CCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCc
Confidence 78888887 447888888877654332235567777776655544
No 421
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=22.87 E-value=3e+02 Score=25.24 Aligned_cols=48 Identities=19% Similarity=0.084 Sum_probs=32.0
Q ss_pred HhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 194 IGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 194 ~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
..|. ++..+.+| .-|.+.+++++++..++...+-+++-++|....|.+
T Consensus 56 ~~~~---~~~~~~~D-----vtd~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~ 103 (324)
T 3u9l_A 56 DNDV---DLRTLELD-----VQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPA 103 (324)
T ss_dssp HHTC---CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCSEEEECCCCCBCSCG
T ss_pred hcCC---cEEEEEee-----cCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCh
Confidence 3455 78888887 458888888887654432235577778876655544
No 422
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=22.83 E-value=37 Score=29.05 Aligned_cols=47 Identities=26% Similarity=0.396 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHhC--CEEEeecccc
Q 041829 216 SPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSNG--MWFHVDAAYA 273 (486)
Q Consensus 216 d~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~g--~~lhvD~A~g 273 (486)
|.+.|+++++...+ .|++ .+|.+..|+++.+.++++| +.+|+|-..|
T Consensus 18 ~~~~l~~al~s~~~------~ifl-----l~g~i~~l~~~v~~lk~~~K~v~Vh~Dli~G 66 (192)
T 3kts_A 18 NQKDMEKILELDLT------YMVM-----LETHVAQLKALVKYAQAGGKKVLLHADLVNG 66 (192)
T ss_dssp SSHHHHHHTTSSCC------EEEE-----CSEETTTHHHHHHHHHHTTCEEEEEGGGEET
T ss_pred CHHHHHHHHcCCCC------EEEE-----ecCcHHHHHHHHHHHHHcCCeEEEecCchhc
Confidence 77889988865422 2333 2467899999999999997 5578886544
No 423
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=22.79 E-value=2.8e+02 Score=24.41 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcCCCCCCeEEcCchhHHHHHHHHHHHHHHHHHhCccCCCCe-EEEecCCC---chhHHH
Q 041829 115 TELEMIVLDWLAKLLKLPEDFLSSGQGGGVIQGTASEAVLVVLLAARDKALKRVGKNSLEKL-VVYASDQT---HSALQK 190 (486)
Q Consensus 115 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~~~~~~-~v~~s~~~---H~s~~~ 190 (486)
..+++++.+|+.+. |.+. -++..|||-.+.+.+..+.+.. .. .+. .+.++... -....+
T Consensus 7 ~~~~~~l~~~i~~~-~~~~--------vvv~lSGGiDSs~~~~l~~~~~--g~------~~v~av~~~~~~~~~~~~a~~ 69 (257)
T 2e18_A 7 DKVIERILEFIREK-GNNG--------VVIGISGGVDSATVAYLATKAL--GK------EKVLGLIMPYFENKDVEDAKL 69 (257)
T ss_dssp HHHHHHHHHHHHHH-CTTC--------EEEECCSSHHHHHHHHHHHHHH--CG------GGEEEEECCSSCSTHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCc--------EEEEecCCHHHHHHHHHHHHhc--CC------CcEEEEEeCCCCchHHHHHHH
Confidence 56788889999988 5433 3788899998877665554331 00 112 22222111 112445
Q ss_pred HHHHhCCCCCCeEEEeCC
Q 041829 191 ACQIGGIHPQNFRVLKTD 208 (486)
Q Consensus 191 a~~~~g~g~~~v~~v~~~ 208 (486)
.|+.+|+ +...++++
T Consensus 70 ~a~~lgi---~~~~i~i~ 84 (257)
T 2e18_A 70 VAEKLGI---GYKVINIK 84 (257)
T ss_dssp HHHHHTC---EEEECCCH
T ss_pred HHHHhCC---CEEEEECh
Confidence 6777898 77776653
No 424
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=22.76 E-value=2e+02 Score=21.43 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=42.3
Q ss_pred CCeEEEecCCCchhHH--HHHHHhCCCCCC---eEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 174 EKLVVYASDQTHSALQ--KACQIGGIHPQN---FRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 174 ~~~~v~~s~~~H~s~~--~a~~~~g~g~~~---v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
...++|....+.++-. ......|+ . +..++++.+. +.+...+.+.+.......|.+++ -| ...|.
T Consensus 19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~---~~~~~~~vdi~~~~----~~~~~~~~l~~~~g~~~vP~v~i--~g-~~igg 88 (114)
T 2hze_A 19 NKVTIFVKYTCPFCRNALDILNKFSF---KRGAYEIVDIKEFK----PENELRDYFEQITGGKTVPRIFF--GK-TSIGG 88 (114)
T ss_dssp TCEEEEECTTCHHHHHHHHHHTTSCB---CTTSEEEEEGGGSS----SHHHHHHHHHHHHSCCSSCEEEE--TT-EEEES
T ss_pred CCEEEEEeCCChhHHHHHHHHHHcCC---CcCceEEEEccCCC----ChHHHHHHHHHHhCCCCcCEEEE--CC-EEEeC
Confidence 4566776666666533 33334455 5 8888887432 33455555555444445675433 33 34444
Q ss_pred cCChH------HHHHHHHHhCC
Q 041829 249 VDPLL------ALGNIAKSNGM 264 (486)
Q Consensus 249 id~l~------~I~~ia~~~g~ 264 (486)
.+++. +|.++.++.|+
T Consensus 89 ~~~~~~~~~~~~L~~~L~~~g~ 110 (114)
T 2hze_A 89 YSDLLEIDNMDALGDILSSIGV 110 (114)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTC
T ss_pred cHHHHHHHHCChHHHHHHHcCC
Confidence 44433 34444555443
No 425
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=22.61 E-value=3e+02 Score=24.44 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=27.1
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSST 247 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG 247 (486)
++..+.+| .-|.+.+++.+++..+....+-+++-++|....+
T Consensus 77 ~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~ 118 (286)
T 3uve_A 77 RIVTAEVD-----VRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGG 118 (286)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCC
T ss_pred ceEEEEcC-----CCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCC
Confidence 78888887 4478888888776544322345677777754444
No 426
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=22.58 E-value=3.5e+02 Score=23.82 Aligned_cols=49 Identities=14% Similarity=-0.027 Sum_probs=30.9
Q ss_pred HHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 193 QIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 193 ~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
...|. ++..+++| .-|.+.+++.+++..++...+-+++-++|....+.+
T Consensus 58 ~~~~~---~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~ 106 (274)
T 3e03_A 58 NAAGG---QGLALKCD-----IREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGT 106 (274)
T ss_dssp HHHTS---EEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred HhcCC---eEEEEeCC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCcccCCCc
Confidence 33465 78888887 447888888777654432234567777776544443
No 427
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=22.57 E-value=2.4e+02 Score=25.16 Aligned_cols=51 Identities=10% Similarity=-0.016 Sum_probs=32.8
Q ss_pred HHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccC
Q 041829 192 CQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVD 250 (486)
Q Consensus 192 ~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id 250 (486)
....|. ++..+.+| .-|.+.+++.+++..+....+-+++-++|....+.+.
T Consensus 60 ~~~~~~---~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~ 110 (285)
T 3sc4_A 60 IEEAGG---QALPIVGD-----IRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIE 110 (285)
T ss_dssp HHHHTS---EEEEEECC-----TTSHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTT
T ss_pred HHhcCC---cEEEEECC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcc
Confidence 344466 78888887 4478888888776544322355677777766555543
No 428
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=22.57 E-value=2.3e+02 Score=24.55 Aligned_cols=38 Identities=16% Similarity=0.028 Sum_probs=24.4
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCC
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGT 243 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~ 243 (486)
++..+++| --|.+.+++.+++..+....+-+++-+++.
T Consensus 59 ~~~~~~~D-----~~~~~~~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 59 TAISVAVD-----VSDPESAKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp EEEEEECC-----TTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred cEEEEEcc-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 77788877 447888888777654332234567767664
No 429
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=22.51 E-value=2.7e+02 Score=26.11 Aligned_cols=82 Identities=16% Similarity=0.082 Sum_probs=51.2
Q ss_pred chhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCC-c---cccccCChHHHHHHHH
Q 041829 185 HSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGT-T---SSTAVDPLLALGNIAK 260 (486)
Q Consensus 185 H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~-t---~tG~id~l~~I~~ia~ 260 (486)
+..+.+.+...|. .+.+... ...+++++..+++.-...|..-+++ +-.|+ + ++=..-++..|..+.+
T Consensus 202 n~~LL~~va~~~k----PVilk~G----~~~tl~ei~~Ave~i~~~GN~~viL-ceRG~~typ~~~~~~vdl~ai~~lk~ 272 (350)
T 1vr6_A 202 NFRLLSKAGSYNK----PVLLKRG----FMNTIEEFLLSAEYIANSGNTKIIL-CERGIRTFEKATRNTLDISAVPIIRK 272 (350)
T ss_dssp CHHHHHHHHTTCS----CEEEECC----TTCCHHHHHHHHHHHHHTTCCCEEE-EECCBCCSCCSSSSBCCTTHHHHHHH
T ss_pred CHHHHHHHHccCC----cEEEcCC----CCCCHHHHHHHHHHHHHCCCCeEEE-EeCCCCCCCCcChhhhhHHHHHHHHH
Confidence 4544554443343 4555532 1348999999998877777544333 32332 2 2222346788888888
Q ss_pred HhCCEEEeeccccch
Q 041829 261 SNGMWFHVDAAYAGS 275 (486)
Q Consensus 261 ~~g~~lhvD~A~g~~ 275 (486)
.+++.+++|..|+.+
T Consensus 273 ~~~lpVi~dssHs~G 287 (350)
T 1vr6_A 273 ESHLPILVDPSHSGG 287 (350)
T ss_dssp HBSSCEEECHHHHHC
T ss_pred hhCCCEEEeCCCCCc
Confidence 889999999999865
No 430
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=22.49 E-value=34 Score=33.93 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=25.5
Q ss_pred cCCccccccCChHHHHHHHHHhCCEEEeecccc
Q 041829 241 VGTTSSTAVDPLLALGNIAKSNGMWFHVDAAYA 273 (486)
Q Consensus 241 ~~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~g 273 (486)
...+..|..++++++++-||++|+.+++|..+.
T Consensus 89 ~id~~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 121 (484)
T 2aaa_A 89 DVNSNFGTADNLKSLSDALHARGMYLMVDVVPD 121 (484)
T ss_dssp EECTTTCCHHHHHHHHHHHHTTTCEEEEEECCS
T ss_pred ccCcccCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 345667778888888888888888888887543
No 431
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*
Probab=22.36 E-value=2.1e+02 Score=26.07 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCCCeEEEeCCC------CCCCccC---HHHHHHHHHHHHhCCCc
Q 041829 188 LQKACQIGGIHPQNFRVLKTDS------STNYSLS---PDSLAEAISRDLTIGLI 233 (486)
Q Consensus 188 ~~~a~~~~g~g~~~v~~v~~~~------~~~~~id---~~~L~~~i~~~~~~g~~ 233 (486)
-.+.++.+|+ +.+++|+.. .+.|.+| ++.+.+.|+...+.|..
T Consensus 46 d~~~l~~~G~---n~vRi~i~w~~~~~~~~~~~~~~~~~~~~d~~v~~a~~~Gi~ 97 (320)
T 3nco_A 46 YFKIIKERGF---DSVRIPIRWSAHISEKYPYEIDKFFLDRVKHVVDVALKNDLV 97 (320)
T ss_dssp HHHHHHHHTC---CEEEECCCGGGSBCSSTTCCBCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHCCC---CEEEEeeehHHhcCCCCCCccCHHHHHHHHHHHHHHHHCCCE
Confidence 4455667899 999998732 1235667 45566777777777743
No 432
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=22.36 E-value=2.6e+02 Score=23.51 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=36.4
Q ss_pred hhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHH
Q 041829 186 SALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALG 256 (486)
Q Consensus 186 ~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~ 256 (486)
+.+...++..|. +++...+-+| |++.++++|++....+ .-+|+.|.| +..|..|=..+..
T Consensus 52 ~~L~~~L~~~G~---~v~~~~iv~D-----d~~~I~~al~~a~~~~--~DlVIttGG-ts~g~~D~t~eal 111 (185)
T 3rfq_A 52 PLVTELLTEAGF---VVDGVVAVEA-----DEVDIRNALNTAVIGG--VDLVVSVGG-TGVTPRDVTPEST 111 (185)
T ss_dssp HHHHHHHHHTTE---EEEEEEEECS-----CHHHHHHHHHHHHHTT--CSEEEEESC-CSSSTTCCHHHHH
T ss_pred HHHHHHHHHCCC---EEEEEEEeCC-----CHHHHHHHHHHHHhCC--CCEEEECCC-CCCCCcccHHHHH
Confidence 445566777788 7776665544 7888888887754222 124555544 4557666655433
No 433
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=22.27 E-value=38 Score=34.65 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=19.1
Q ss_pred CccccccCChHHHHHHHHHhCCEEEeeccc
Q 041829 243 TTSSTAVDPLLALGNIAKSNGMWFHVDAAY 272 (486)
Q Consensus 243 ~t~tG~id~l~~I~~ia~~~g~~lhvD~A~ 272 (486)
....|..++++++++-||++|+.+++|..+
T Consensus 216 dp~~Gt~~df~~lv~~~H~~Gi~VilD~V~ 245 (588)
T 1j0h_A 216 DPHFGDKETLKTLIDRCHEKGIRVMLDAVF 245 (588)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CccCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 344566666666666677777777776543
No 434
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=22.26 E-value=2.5e+02 Score=25.56 Aligned_cols=44 Identities=11% Similarity=-0.077 Sum_probs=28.6
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+.+| .-|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 87 ~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~ 130 (322)
T 3qlj_A 87 EAVADGSN-----VADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMI 130 (322)
T ss_dssp EEEEECCC-----TTSHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCG
T ss_pred cEEEEECC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 77777776 458888888877654432235567777776655544
No 435
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=22.15 E-value=32 Score=34.00 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=26.0
Q ss_pred CCccccccCChHHHHHHHHHhCCEEEeeccc
Q 041829 242 GTTSSTAVDPLLALGNIAKSNGMWFHVDAAY 272 (486)
Q Consensus 242 ~~t~tG~id~l~~I~~ia~~~g~~lhvD~A~ 272 (486)
..+..|..++++++++-||++|+.+++|..+
T Consensus 67 idp~~Gt~~d~~~lv~~~h~~Gi~VilD~V~ 97 (471)
T 1jae_A 67 INTRSGDESAFTDMTRRCNDAGVRIYVDAVI 97 (471)
T ss_dssp SEETTEEHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3456788899999999999999999999754
No 436
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=21.89 E-value=3.7e+02 Score=22.88 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=23.2
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTS 245 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~ 245 (486)
++..+..| --|.+.+++.+++..+....+-+|+-+++...
T Consensus 56 ~~~~~~~D-----~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~ 95 (247)
T 2hq1_A 56 NVVVAKGD-----VKNPEDVENMVKTAMDAFGRIDILVNNAGITR 95 (247)
T ss_dssp CEEEEESC-----TTSHHHHHHHHHHHHHHHSCCCEEEECC----
T ss_pred cEEEEECC-----CCCHHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 78888877 34788888887764332223456666666543
No 437
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=21.79 E-value=1e+02 Score=29.03 Aligned_cols=39 Identities=15% Similarity=0.044 Sum_probs=23.2
Q ss_pred HHHHHhCCCCCCeEEEeCCCCCCCc-cCHHHHHHHHHHHHhCC
Q 041829 190 KACQIGGIHPQNFRVLKTDSSTNYS-LSPDSLAEAISRDLTIG 231 (486)
Q Consensus 190 ~a~~~~g~g~~~v~~v~~~~~~~~~-id~~~L~~~i~~~~~~g 231 (486)
+.++-.|+ +++++|+...+.+. -..+.|++.++...+.|
T Consensus 61 ~~lk~~G~---N~VRip~~~~~~~~~~~l~~ld~~v~~a~~~G 100 (345)
T 3jug_A 61 PAIAEQGA---NTIRIVLSDGGQWEKDDIDTVREVIELAEQNK 100 (345)
T ss_dssp HHHHHTTC---SEEEEEECCSSSSCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHcCC---CEEEEEecCCCccCHHHHHHHHHHHHHHHHCC
Confidence 34556788 88999886432221 13555666666666555
No 438
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=21.67 E-value=1.4e+02 Score=25.75 Aligned_cols=76 Identities=3% Similarity=-0.003 Sum_probs=41.9
Q ss_pred CchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCc---cc----cccCChHHHH
Q 041829 184 THSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTT---SS----TAVDPLLALG 256 (486)
Q Consensus 184 ~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t---~t----G~id~l~~I~ 256 (486)
.-.....+++. .+ .++.-|-+..-.+.+|...++.+.+. | +++=++..+- +. |.+.+..++.
T Consensus 85 ~~~~n~~a~~~-~v---DII~Hp~~~~~~~~~~~~~a~~A~e~----g---v~lEIn~s~~~~~~~~~R~~~~~~~~~il 153 (212)
T 1v77_A 85 DLRVIRYSIEK-GV---DAIISPWVNRKDPGIDHVLAKLMVKK----N---VALGFSLRPLLYSNPYERANLLRFMMKAW 153 (212)
T ss_dssp CHHHHHHHHHT-TC---SEEECTTTTSSSCSCCHHHHHHHHHH----T---CEEEEESHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhC-CC---CEEecccccccCCCCCHHHHHHHHHC----C---eEEEEECcHHhcCCcchHHHHHHHHHHHH
Confidence 33455667777 88 88776654311122333333333322 2 1233332221 11 2367778999
Q ss_pred HHHHHhCCEEEeec
Q 041829 257 NIAKSNGMWFHVDA 270 (486)
Q Consensus 257 ~ia~~~g~~lhvD~ 270 (486)
++|+++|+++++..
T Consensus 154 ~l~k~~g~~ivisS 167 (212)
T 1v77_A 154 KLVEKYKVRRFLTS 167 (212)
T ss_dssp HHHHHHTCCEEEEC
T ss_pred HHHHhcCCCEEEeC
Confidence 99999999988763
No 439
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=21.37 E-value=4.2e+02 Score=23.27 Aligned_cols=59 Identities=19% Similarity=0.010 Sum_probs=34.8
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEe-cCCcc
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCAT-VGTTS 245 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~-~~~t~ 245 (486)
+++++. ......+.+..++. ++..+.+| .-|.+.+++.++.. ++-..+-+++.+ ++...
T Consensus 57 Vi~~~r-~~~~~~~~~~~~~~---~~~~~~~D-----l~~~~~v~~~~~~~-~~~~~id~lv~~aag~~~ 116 (281)
T 3ppi_A 57 VVIADL-AAEKGKALADELGN---RAEFVSTN-----VTSEDSVLAAIEAA-NQLGRLRYAVVAHGGFGV 116 (281)
T ss_dssp EEEEES-CHHHHHHHHHHHCT---TEEEEECC-----TTCHHHHHHHHHHH-TTSSEEEEEEECCCCCCC
T ss_pred EEEEeC-ChHHHHHHHHHhCC---ceEEEEcC-----CCCHHHHHHHHHHH-HHhCCCCeEEEccCcccc
Confidence 444443 33345556666666 88888887 45888898888765 332234455555 44333
No 440
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Probab=21.29 E-value=2.5e+02 Score=24.44 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=34.6
Q ss_pred EEEecCCCchhHHHHHHHhCCCCCCeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCc
Q 041829 177 VVYASDQTHSALQKACQIGGIHPQNFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTT 244 (486)
Q Consensus 177 ~v~~s~~~H~s~~~a~~~~g~g~~~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t 244 (486)
+++++.. -....+....++- ++..+++| .-|.+.+++.+++..+.-..+-+++-++|..
T Consensus 27 V~~~~r~-~~~~~~~~~~~~~---~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~ 85 (248)
T 3asu_A 27 VIATGRR-QERLQELKDELGD---NLYIAQLD-----VRNRAAIEEMLASLPAEWCNIDILVNNAGLA 85 (248)
T ss_dssp EEEEESC-HHHHHHHHHHHCT---TEEEEECC-----TTCHHHHHHHHHTSCTTTCCCCEEEECCCCC
T ss_pred EEEEeCC-HHHHHHHHHHhcC---ceEEEEcC-----CCCHHHHHHHHHHHHHhCCCCCEEEECCCcC
Confidence 4444433 2334444455554 77888877 4488889888876543322355677677643
No 441
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=21.24 E-value=67 Score=29.39 Aligned_cols=55 Identities=7% Similarity=-0.019 Sum_probs=35.9
Q ss_pred ccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh---CCEEEe
Q 041829 214 SLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN---GMWFHV 268 (486)
Q Consensus 214 ~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~---g~~lhv 268 (486)
.+|.+.+++.++...+.|-.-+++..+.|...+=..+.-.++.+.+.+. .+.+++
T Consensus 19 ~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpvia 76 (292)
T 3daq_A 19 KVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIA 76 (292)
T ss_dssp EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 8889998888888877775555555555555554556666677766554 345544
No 442
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=21.20 E-value=4.3e+02 Score=23.30 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=27.1
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+++| .-|.+.+++.+++..+.-..+-+++-++|....+.+
T Consensus 80 ~~~~~~~D-----~~~~~~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~ 123 (283)
T 1g0o_A 80 DAACVKAN-----VGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHV 123 (283)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred CeEEEEcC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCc
Confidence 78888877 347888887776643321234467777776544433
No 443
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=20.96 E-value=3.7e+02 Score=23.44 Aligned_cols=38 Identities=8% Similarity=-0.108 Sum_probs=25.3
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCC
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGT 243 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~ 243 (486)
++..+.+| --|.+.+++.+++..+.-..+-+++-+++.
T Consensus 61 ~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 98 (264)
T 3ucx_A 61 RALSVGTD-----ITDDAQVAHLVDETMKAYGRVDVVINNAFR 98 (264)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHTSCCSEEEECCCS
T ss_pred cEEEEEcC-----CCCHHHHHHHHHHHHHHcCCCcEEEECCCC
Confidence 78888887 448888888887654432234566666654
No 444
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=20.85 E-value=4.3e+02 Score=23.20 Aligned_cols=42 Identities=7% Similarity=-0.040 Sum_probs=28.4
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSST 247 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG 247 (486)
++..+.+| .-|.+.+++.+++..+....+-+++-++|....+
T Consensus 72 ~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~ 113 (287)
T 3pxx_A 72 KAYTAEVD-----VRDRAAVSRELANAVAEFGKLDVVVANAGICPLG 113 (287)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCC
T ss_pred ceEEEEcc-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCccc
Confidence 78888887 4488888888776544322355677777765544
No 445
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=20.81 E-value=31 Score=33.54 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=16.3
Q ss_pred cccccCChHHHHHHHHHhCCEEEeecc
Q 041829 245 SSTAVDPLLALGNIAKSNGMWFHVDAA 271 (486)
Q Consensus 245 ~tG~id~l~~I~~ia~~~g~~lhvD~A 271 (486)
..|..++++++++-||++|+.+++|..
T Consensus 70 ~~G~~~d~~~lv~~~h~~Gi~VilD~V 96 (422)
T 1ua7_A 70 YLGTEQEFKEMCAAAEEYGIKVIVDAV 96 (422)
T ss_dssp TTEEHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 345566666666666666666666654
No 446
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=20.74 E-value=3e+02 Score=24.72 Aligned_cols=42 Identities=14% Similarity=0.007 Sum_probs=27.7
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSST 247 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG 247 (486)
++..+++| .-|.+.+++.+++..+....+-+++-++|....+
T Consensus 90 ~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~ 131 (299)
T 3t7c_A 90 RIIASQVD-----VRDFDAMQAAVDDGVTQLGRLDIVLANAALASEG 131 (299)
T ss_dssp CEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCC
T ss_pred ceEEEECC-----CCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 78888887 4488888888876544322345677777755444
No 447
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=20.71 E-value=37 Score=33.67 Aligned_cols=15 Identities=7% Similarity=0.122 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhCC
Q 041829 217 PDSLAEAISRDLTIG 231 (486)
Q Consensus 217 ~~~L~~~i~~~~~~g 231 (486)
.++|++.+++..++|
T Consensus 102 ~~df~~Lv~~aH~~G 116 (488)
T 2wc7_A 102 NEAFKELLDAAHQRN 116 (488)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 455555555555554
No 448
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=20.50 E-value=41 Score=30.89 Aligned_cols=50 Identities=12% Similarity=0.196 Sum_probs=31.8
Q ss_pred CccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHHHHHHHHh
Q 041829 213 YSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLALGNIAKSN 262 (486)
Q Consensus 213 ~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I~~ia~~~ 262 (486)
+.+|.+.+++.++...+.|-.-+++..|.|..++=..+.-.++.+.+.+.
T Consensus 16 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 65 (292)
T 2vc6_A 16 DRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKT 65 (292)
T ss_dssp TEECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 58999999999888877775544444444444444445556666666553
No 449
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=20.49 E-value=4.4e+02 Score=23.20 Aligned_cols=78 Identities=12% Similarity=0.153 Sum_probs=49.3
Q ss_pred HHHHHHHhCCCCCC-eEEEeCCCCCC-----------CccCHHHHHHHHHHHHhCCCccEEEEEecCCccccccCChHHH
Q 041829 188 LQKACQIGGIHPQN-FRVLKTDSSTN-----------YSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAVDPLLAL 255 (486)
Q Consensus 188 ~~~a~~~~g~g~~~-v~~v~~~~~~~-----------~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~id~l~~I 255 (486)
+.+.++..|. + ++-+|..+.+. -.++.+++++.|+...+.-..-+.|.=-.|+-.|..-..++.+
T Consensus 44 ~a~~A~~~G~---EvllHlPMep~~~~~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a~GvnNHmGS~~T~~~~~m~~v 120 (245)
T 2nly_A 44 QAEIAQAAGL---EVIVHMPLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRAI 120 (245)
T ss_dssp HHHHHHHTTC---EEEEEEEECCC--------CCCBCTTCCHHHHHHHHHHHHHHSTTCCEEEEEECTTGGGCHHHHHHH
T ss_pred HHHHHHHCCC---EEEEEcCCCCCCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHCCCcEEEecccccchhcCHHHHHHH
Confidence 4455556665 5 44566543210 1578899999998876543222333333466667767788999
Q ss_pred HHHHHHhCCEEEee
Q 041829 256 GNIAKSNGMWFHVD 269 (486)
Q Consensus 256 ~~ia~~~g~~lhvD 269 (486)
.++++++|++| +|
T Consensus 121 m~~l~~~gL~f-vD 133 (245)
T 2nly_A 121 LEVVKEKNAFI-ID 133 (245)
T ss_dssp HHHHHHTTCEE-EE
T ss_pred HHHHHHCCCEE-Ec
Confidence 99999999776 45
No 450
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=20.45 E-value=42 Score=34.15 Aligned_cols=30 Identities=7% Similarity=0.067 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHhCCCccEEEEEecCCccccc
Q 041829 216 SPDSLAEAISRDLTIGLIPFFLCATVGTTSSTA 248 (486)
Q Consensus 216 d~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~ 248 (486)
+.++|++.+++..++|.+ |++-...|-++.
T Consensus 91 t~~df~~lv~~aH~~Gi~---VilD~V~NH~s~ 120 (570)
T 1m53_A 91 TMEDFDSLVAEMKKRNMR---LMIDVVINHTSD 120 (570)
T ss_dssp CHHHHHHHHHHHHHTTCE---EEEEECCSBCCT
T ss_pred CHHHHHHHHHHHHHCCCE---EEEEEecccccc
Confidence 455666666665555532 444444444443
No 451
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=20.45 E-value=3.9e+02 Score=23.17 Aligned_cols=43 Identities=12% Similarity=-0.093 Sum_probs=27.4
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCC-CccEEEEEecCCccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIG-LIPFFLCATVGTTSSTA 248 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g-~~p~~vv~~~~~t~tG~ 248 (486)
++..+.+| .-|.+.+++.+++..+.- ..+-+++-++|....+.
T Consensus 59 ~~~~~~~D-----~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~ 102 (260)
T 2ae2_A 59 KVEASVCD-----LSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKE 102 (260)
T ss_dssp EEEEEECC-----TTCHHHHHHHHHHHHHHTTTCCCEEEECCCCCCCCC
T ss_pred cEEEEEcC-----CCCHHHHHHHHHHHHHHcCCCCCEEEECCCCCCCCC
Confidence 67777776 447888888887654432 23556777777554443
No 452
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=20.24 E-value=2.2e+02 Score=25.07 Aligned_cols=44 Identities=11% Similarity=0.004 Sum_probs=29.6
Q ss_pred CeEEEeCCCCCCCccCHHHHHHHHHHHHhCCCccEEEEEecCCcccccc
Q 041829 201 NFRVLKTDSSTNYSLSPDSLAEAISRDLTIGLIPFFLCATVGTTSSTAV 249 (486)
Q Consensus 201 ~v~~v~~~~~~~~~id~~~L~~~i~~~~~~g~~p~~vv~~~~~t~tG~i 249 (486)
++..+++| --|.+.+++.+++..+....+-+++-++|....+.+
T Consensus 64 ~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~ 107 (262)
T 3ksu_A 64 KVALYQSD-----LSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPI 107 (262)
T ss_dssp EEEEEECC-----CCSHHHHHHHHHHHHHHHCSEEEEEECCCCCCSSCG
T ss_pred cEEEEECC-----CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 78888887 448888888887654432345677777776555544
No 453
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=20.05 E-value=41 Score=34.38 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=16.1
Q ss_pred ccccccCChHHHHHHHHHhCCEEEeecc
Q 041829 244 TSSTAVDPLLALGNIAKSNGMWFHVDAA 271 (486)
Q Consensus 244 t~tG~id~l~~I~~ia~~~g~~lhvD~A 271 (486)
...|..++++++++-||++|+.+++|..
T Consensus 214 ~~~Gt~~dfk~lv~~~H~~Gi~VilD~V 241 (585)
T 1wzl_A 214 PQFGDLPTFRRLVDEAHRRGIKIILDAV 241 (585)
T ss_dssp TTTCCHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 3445555566666666666666666654
No 454
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=20.04 E-value=42 Score=34.26 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=19.9
Q ss_pred CccccccCChHHHHHHHHHhCCEEEeeccc
Q 041829 243 TTSSTAVDPLLALGNIAKSNGMWFHVDAAY 272 (486)
Q Consensus 243 ~t~tG~id~l~~I~~ia~~~g~~lhvD~A~ 272 (486)
....|..++++++++-||++|+.+++|..+
T Consensus 212 dp~~Gt~~df~~lv~~~H~~Gi~VilD~V~ 241 (583)
T 1ea9_C 212 DPQFGDKDTLKKLVDLCHERGIRVLLDAVF 241 (583)
T ss_dssp CTTTCCHHHHHHHHHHHTTTTCEEEEECCC
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 344566666777777777777777777654
Done!