BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041833
(427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 321 bits (823), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 152/249 (61%), Positives = 187/249 (75%), Gaps = 5/249 (2%)
Query: 73 DRVGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSS 132
DR+ +LPGQ V+F YSGY+TV+E +GR+LFY EA ED PLVLWLNGGPGCSS
Sbjct: 9 DRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 67
Query: 133 IAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSYSNTSSDITTNGDK 192
+AYG +EE+G F +KP G L LN Y WN+VAN+LFLDSP GVGFSY+NTSSDI T+GD
Sbjct: 68 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 127
Query: 193 RTAEDSLKFLLKWLERFSQFKGRDFYISGESYGGHYVPQLSKAIIRHNQATGEKAINLKG 252
RTA DS FL KW ERF +K RDFYI+GESY GHYVP+LS+ + R + INLKG
Sbjct: 128 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR----SKNPVINLKG 183
Query: 253 YMVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLNLLCDYESFVHPSSSCDKVLEVADN 312
+MVGN L DDYHDY+G F+FWW+ G++SDDTY++L C ++SF+HPS +CD +VA
Sbjct: 184 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA 243
Query: 313 ELGNIDQYN 321
E GNID Y+
Sbjct: 244 EQGNIDMYS 252
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 321 bits (823), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 152/249 (61%), Positives = 187/249 (75%), Gaps = 5/249 (2%)
Query: 73 DRVGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSS 132
DR+ +LPGQ V+F YSGY+TV+E +GR+LFY EA ED PLVLWLNGGPGCSS
Sbjct: 9 DRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 67
Query: 133 IAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSYSNTSSDITTNGDK 192
+AYG +EE+G F +KP G L LN Y WN+VAN+LFLDSP GVGFSY+NTSSDI T+GD
Sbjct: 68 VAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 127
Query: 193 RTAEDSLKFLLKWLERFSQFKGRDFYISGESYGGHYVPQLSKAIIRHNQATGEKAINLKG 252
RTA DS FL KW ERF +K RDFYI+GESY GHYVP+LS+ + R + INLKG
Sbjct: 128 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR----SKNPVINLKG 183
Query: 253 YMVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLNLLCDYESFVHPSSSCDKVLEVADN 312
+MVGN L DDYHDY+G F+FWW+ G++SDDTY++L C ++SF+HPS +CD +VA
Sbjct: 184 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA 243
Query: 313 ELGNIDQYN 321
E GNID Y+
Sbjct: 244 EQGNIDMYS 252
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 320 bits (821), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 152/249 (61%), Positives = 187/249 (75%), Gaps = 5/249 (2%)
Query: 73 DRVGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSS 132
DR+ +LPGQ V+F YSGY+TV+E +GR+LFY EA ED PLVLWLNGGPGCSS
Sbjct: 4 DRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 62
Query: 133 IAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSYSNTSSDITTNGDK 192
+AYG +EE+G F +KP G L LN Y WN+VAN+LFLDSP GVGFSY+NTSSDI T+GD
Sbjct: 63 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 122
Query: 193 RTAEDSLKFLLKWLERFSQFKGRDFYISGESYGGHYVPQLSKAIIRHNQATGEKAINLKG 252
RTA DS FL KW ERF +K RDFYI+GESY GHYVP+LS+ + R + INLKG
Sbjct: 123 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR----SKNPVINLKG 178
Query: 253 YMVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLNLLCDYESFVHPSSSCDKVLEVADN 312
+MVGN L DDYHDY+G F+FWW+ G++SDDTY++L C ++SF+HPS +CD +VA
Sbjct: 179 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA 238
Query: 313 ELGNIDQYN 321
E GNID Y+
Sbjct: 239 EQGNIDMYS 247
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 320 bits (821), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 152/249 (61%), Positives = 187/249 (75%), Gaps = 5/249 (2%)
Query: 73 DRVGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSS 132
DR+ +LPGQ V+F YSGY+TV+E +GR+LFY EA ED PLVLWLNGGPGCSS
Sbjct: 5 DRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 63
Query: 133 IAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSYSNTSSDITTNGDK 192
+AYG +EE+G F +KP G L LN Y WN+VAN+LFLDSP GVGFSY+NTSSDI T+GD
Sbjct: 64 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 123
Query: 193 RTAEDSLKFLLKWLERFSQFKGRDFYISGESYGGHYVPQLSKAIIRHNQATGEKAINLKG 252
RTA DS FL KW ERF +K RDFYI+GESY GHYVP+LS+ + R + INLKG
Sbjct: 124 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR----SKNPVINLKG 179
Query: 253 YMVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLNLLCDYESFVHPSSSCDKVLEVADN 312
+MVGN L DDYHDY+G F+FWW+ G++SDDTY++L C ++SF+HPS +CD +VA
Sbjct: 180 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA 239
Query: 313 ELGNIDQYN 321
E GNID Y+
Sbjct: 240 EQGNIDMYS 248
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 244 bits (622), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 124/255 (48%), Positives = 171/255 (67%), Gaps = 6/255 (2%)
Query: 67 VAQQKLDRVGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKP-LVLWLN 125
+ QQ+ DR+ LPGQ V F Y GYVT+++ +GRAL+YWF EA + LVLWLN
Sbjct: 2 LQQQEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLN 61
Query: 126 GGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSYSNTSSD 185
GGPGCSSI G +E+G F + +G++L LN Y+WN+ ANILF +SP GVGFSYSNTSSD
Sbjct: 62 GGPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSD 121
Query: 186 ITTNGDKRTAEDSLKFLLKWLERFSQFKGRDFYISGESYGGHYVPQLSKAIIRHNQATGE 245
++ GD + A+D+ FL+KW ERF + R+FYI+GES GH++PQLS+ + R+ +
Sbjct: 122 LSM-GDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRNNS-- 176
Query: 246 KAINLKGYMVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLNLLCDYESFVHPSSSCDK 305
IN +G +V + LT+D+ D +G+F+ WW GLISD+T +C SF+HP+ C +
Sbjct: 177 PFINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTE 236
Query: 306 VLEVADNELGNIDQY 320
V A E GNI+ Y
Sbjct: 237 VWNKALAEQGNINPY 251
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 127/219 (57%), Gaps = 11/219 (5%)
Query: 73 DRVGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSS 132
D + +LPG +F YSGY+ + L YWFVE+ +DP++ P+VLWLNGGPGCSS
Sbjct: 5 DEIQRLPGLAKQPSFRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSS 62
Query: 133 IAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSYSNTSSDITTNGDK 192
+ G E GPF ++PDG TL NPYSWN +AN+L+L+SP GVGFSYS+ D
Sbjct: 63 LD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYATNDT 119
Query: 193 RTAEDSLKFLLKWLERFSQFKGRDFYISGESYGGHYVPQLSKAIIRHNQATGEKAINLKG 252
A+ + + L + F ++K +++GESY G Y+P L+ +++ + ++NL+G
Sbjct: 120 EVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ------DPSMNLQG 173
Query: 253 YMVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLNLLC 291
VGN L+ + L F + GL+ + + L C
Sbjct: 174 LAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC 212
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 337 SGDTDAVIPVTSTRYSIDALNLPTV---KPWRAWY-DEG-QVGGWTQEYSGLTFVTVRGA 391
+GD D + +D+LN +PW Y D G Q+ G+ +E+S + F+T++GA
Sbjct: 368 NGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHIAFLTIKGA 427
Query: 392 GHEVPLHRPKPALTLIKSFLSGR 414
GH VP +P A T+ FL+ +
Sbjct: 428 GHMVPTDKPLAAFTMFSRFLNKQ 450
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 128/219 (58%), Gaps = 11/219 (5%)
Query: 73 DRVGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSS 132
D + +LPG +F YSGY+ + L YWFVE+ +DP++ P+VLWLNGGPGCSS
Sbjct: 7 DEIQRLPGLAKQPSFRQYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSS 64
Query: 133 IAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSYSNTSSDITTNGDK 192
+ G E GPF ++PDG TL NPYSWN +AN+L+L+SP GVGFSYS+ T D
Sbjct: 65 LD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATN--DT 121
Query: 193 RTAEDSLKFLLKWLERFSQFKGRDFYISGESYGGHYVPQLSKAIIRHNQATGEKAINLKG 252
A+ + + L + F ++K +++GESY G Y+P L+ +++ + ++NL+G
Sbjct: 122 EVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ------DPSMNLQG 175
Query: 253 YMVGNALTDDYHDYLGLFQFWWSAGLISDDTYKQLNLLC 291
VGN L+ + L F + GL+ + + L C
Sbjct: 176 LAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC 214
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 108/183 (59%), Gaps = 12/183 (6%)
Query: 86 NFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFH 145
N Y+GY+ V +E + F+W E+ DP P++LWLNGGPGCSS+ G E+GP
Sbjct: 13 NVTQYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFELGPSS 70
Query: 146 IKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSYSNTSSDITTNGDKRTAEDSLKFLLKW 205
I PD K + NPYSWN A ++FLD PV VGFSYS +S T +D FL +
Sbjct: 71 IGPDLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNT---VAAGKDVYNFLELF 126
Query: 206 LERFSQF--KGRDFYISGESYGGHYVPQLSKAIIRHNQATGEKAINLKGYMVGNALTDDY 263
++F ++ KG+DF+I+GESY GHY+P + I+ H ++ NL ++GN LTD
Sbjct: 127 FDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHK----DRNFNLTSVLIGNGLTDPL 182
Query: 264 HDY 266
Y
Sbjct: 183 TQY 185
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 361 VKPWRAWYDEGQVGGWTQEYSGLTFVTVRGAGHEVPLHRPKPALTLIKSFLSG 413
V+ W A + +V G + Y T++ V GH VP P+ AL+++ ++ G
Sbjct: 366 VRNWTASITD-EVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 106/183 (57%), Gaps = 12/183 (6%)
Query: 86 NFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFH 145
N Y+GY+ V +E + F+W E+ DP P++LWLNGGPGCSS+ G +GP
Sbjct: 13 NVTQYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFALGPSS 70
Query: 146 IKPDGKTLYLNPYSWNQVANILFLDSPVGVGFSYSNTSSDITTNGDKRTAEDSLKFLLKW 205
I PD K + NPYSWN A ++FLD PV VGFSYS +S T +D FL +
Sbjct: 71 IGPDLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNT---VAAGKDVYNFLELF 126
Query: 206 LERFSQF--KGRDFYISGESYGGHYVPQLSKAIIRHNQATGEKAINLKGYMVGNALTDDY 263
++F ++ KG+DF+I+G SY GHY+P + I+ H ++ NL ++GN LTD
Sbjct: 127 FDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHK----DRNFNLTSVLIGNGLTDPL 182
Query: 264 HDY 266
Y
Sbjct: 183 TQY 185
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 361 VKPWRAWYDEGQVGGWTQEYSGLTFVTVRGAGHEVPLHRPKPALTLIKSFLSG 413
V+ W A + +V G + Y T++ V GH VP P+ AL+++ ++ G
Sbjct: 366 VRNWTASITD-EVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 64/81 (79%)
Query: 337 SGDTDAVIPVTSTRYSIDALNLPTVKPWRAWYDEGQVGGWTQEYSGLTFVTVRGAGHEVP 396
SGDTDAV+P+T+TRYSI AL LPT W WYD+ +VGGW+Q Y GLT V+VRGAGHEVP
Sbjct: 73 SGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVSVRGAGHEVP 132
Query: 397 LHRPKPALTLIKSFLSGRSMP 417
LHRP+ AL L + FL G+ MP
Sbjct: 133 LHRPRQALVLFQYFLQGKPMP 153
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 64/81 (79%)
Query: 337 SGDTDAVIPVTSTRYSIDALNLPTVKPWRAWYDEGQVGGWTQEYSGLTFVTVRGAGHEVP 396
SGDTDAV+P+T+TRYSI AL LPT W WYD+ +VGGW+Q Y GLT V+VRGAGHEVP
Sbjct: 71 SGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVSVRGAGHEVP 130
Query: 397 LHRPKPALTLIKSFLSGRSMP 417
LHRP+ AL L + FL G+ MP
Sbjct: 131 LHRPRQALVLFQYFLQGKPMP 151
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 64/81 (79%)
Query: 337 SGDTDAVIPVTSTRYSIDALNLPTVKPWRAWYDEGQVGGWTQEYSGLTFVTVRGAGHEVP 396
SGDTDAV+P+T+TRYSI AL LPT W WYD+ +VGGW+Q Y GLT V+VRGAGHEVP
Sbjct: 71 SGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVSVRGAGHEVP 130
Query: 397 LHRPKPALTLIKSFLSGRSMP 417
LHRP+ AL L + FL G+ MP
Sbjct: 131 LHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 64/81 (79%)
Query: 337 SGDTDAVIPVTSTRYSIDALNLPTVKPWRAWYDEGQVGGWTQEYSGLTFVTVRGAGHEVP 396
SGDTDAV+P+T+TRYSI AL LPT W WYD+ +VGGW+Q Y GLT V+VRGAGHEVP
Sbjct: 71 SGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVSVRGAGHEVP 130
Query: 397 LHRPKPALTLIKSFLSGRSMP 417
LHRP+ AL L + FL G+ MP
Sbjct: 131 LHRPRQALVLFQYFLQGKPMP 151
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 100/210 (47%), Gaps = 12/210 (5%)
Query: 118 KPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPVGVGF 177
+PL++WLNGGPGCSS+ G E GPF + DGK LYLN SW ++LF+D P G GF
Sbjct: 67 RPLIIWLNGGPGCSSMD-GALVESGPFRVNSDGK-LYLNEGSWISKGDLLFIDQPTGTGF 124
Query: 178 SYSNTSSD--ITTNGDKRTAEDSLKFLLKWLER----FSQFKGRDFYISGESYGGHYVPQ 231
S + I N ED K + +LE F + R +SGESY G Y+P
Sbjct: 125 SVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPF 184
Query: 232 LSKAIIRHNQ--ATGEKAINLKGYMVGNALTDDYHDYLGLFQFWWSAGLI--SDDTYKQL 287
+ AI+ HN+ +LK ++GN D L F LI S+ +K L
Sbjct: 185 FANAILNHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHL 244
Query: 288 NLLCDYESFVHPSSSCDKVLEVADNELGNI 317
+ + S+S D+ + E NI
Sbjct: 245 TNAHENCQNLINSASTDEAAHFSYQECENI 274
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 351 YSIDALNLPTVKPWRAWYDEGQVGGWTQEYSGLTFVTVRGAGHEVPLHR 399
+S DA++ + ++ D + G+ + LTFV+V A H VP +
Sbjct: 406 FSDDAVSFDWIHKSKSTDDSEEFSGYVKYDRNLTFVSVYNASHMVPFDK 454
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 58/85 (68%), Gaps = 3/85 (3%)
Query: 337 SGDTDAVIPVTSTRYSIDALNLPTVKPWRAWY---DEGQVGGWTQEYSGLTFVTVRGAGH 393
SGDTD+V+PV+STR S+ AL LP W WY E +VGGW+ +Y GLT+VTVRGAGH
Sbjct: 73 SGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEGLTYVTVRGAGH 132
Query: 394 EVPLHRPKPALTLIKSFLSGRSMPC 418
VP+HRP A L K FL G MP
Sbjct: 133 LVPVHRPAQAFLLFKQFLKGEPMPA 157
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 337 SGDTDAVIPVTSTRYSIDALNLPT---VKPWRAWY-DEG-QVGGWTQEYSGLTFVTVRGA 391
+GD D + +D+LN +PW Y D G Q+ G+ +E+S + F+T++GA
Sbjct: 70 NGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHIAFLTIKGA 129
Query: 392 GHEVPLHRPKPALTLIKSFLSGR 414
GH VP +P A T+ FL+ +
Sbjct: 130 GHMVPTDKPLAAFTMFSRFLNKQ 152
>pdb|1RDS|A Chain A, Crystal Structure Of Ribonuclease Ms (As Ribonuclease T1
Homologue) Complexed With A Guanylyl-3',5'-Cytidine
Analogue
pdb|1RMS|A Chain A, Crystal Structures Of Ribonuclease Ms Complexed With 3'-
Guanylic Acid A GpC Analogue,
2'-Deoxy-2'-Fluoroguanylyl- 3',5'-Cytidine
Length = 105
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 240 NQATGEKAINLKGYMVGNALTD---DYHDYLGLFQFWWSAGLISDDTYKQLNLLCDYESF 296
+ + KA Y G+ + D +YHDY G F F S TY + ++ DY+ +
Sbjct: 15 SDVSAAKAKGYSLYESGDTIDDYPHEYHDYEG-FDFPVSG------TYYEYPIMSDYDVY 67
Query: 297 VHPSSSCDKVLEVADNELGNI 317
S D+V+ D+EL +
Sbjct: 68 TGGSPGADRVIFNGDDELAGV 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,142,386
Number of Sequences: 62578
Number of extensions: 629667
Number of successful extensions: 1401
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1354
Number of HSP's gapped (non-prelim): 29
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)