SHP1 protein (Arabidopsis thaliana)

STRING 9.05

SHP1 protein (Arabidopsis thaliana) - STRING network view

This is the evidence view. Different line colors represent the types of evidence for the association.




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Your Input:
	SHP1	SHP1 (SHATTERPROOF 1); DNA binding / protein binding / transcription factor; One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells. ; Probable transcription factor (248 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	SEP3	SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factor; Member of the MADs box [...] (251 aa)		•	•	•	0.999
	F14F8_180	SEP1 (SEPALLATA1); DNA binding / transcription factor; Encodes a MADS box transcription factor [...] (262 aa)		•	•	•	0.969
	AG	AG (AGAMOUS); DNA binding / transcription factor; Floral homeotic gene encoding a MADS domain t [...] (252 aa)		•	•	•	0.948
	TT16	TT16 (TRANSPARENT TESTA16); transcription factor; Encodes a MADS box protein. Regulates proanth [...] (252 aa)		•	•	•	0.936
	AGL79	AGL79 (AGAMOUS-LIKE 79); DNA binding / transcription factor; AGAMOUS-LIKE 79 (AGL79); FUNCTIONS [...] (249 aa)		•		•	0.932
	SHP2	SHP2 (SHATTERPROOF 2); protein binding / transcription factor; AGAMOUS [AG]-like MADS box prote [...] (248 aa)	•	•	•	•	0.911
	STK	STK (SEEDSTICK); protein binding / transcription factor; a MADS box transcription factor expres [...] (256 aa)	•	•	•	•	0.895
	SEP4	SEP4 (SEPALLATA 4); DNA binding / transcription factor; This gene belongs to the family of SEP [...] (258 aa)		•	•	•	0.873
	VSP1	VSP1 (VEGETATIVE STORAGE PROTEIN 1); acid phosphatase/ transcription factor binding; encodes an [...] (270 aa)		•			0.847
	AT1G33610	protein binding; protein binding; FUNCTIONS IN- protein binding; INVOLVED IN- signal transducti [...] (907 aa)		•			0.847

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Info & Parameters ...

Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

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