Query 041834
Match_columns 189
No_of_seqs 198 out of 1150
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 11:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01486 K-box: K-box region; 99.9 4.7E-25 1E-29 164.4 11.7 95 17-111 6-100 (100)
2 KOG0014 MADS box transcription 96.9 0.00023 5E-09 57.8 0.3 74 28-101 112-190 (195)
3 PF06005 DUF904: Protein of un 95.6 0.2 4.4E-06 35.4 9.2 52 57-113 1-52 (72)
4 PRK15422 septal ring assembly 92.3 2.2 4.9E-05 30.7 9.0 46 57-107 1-46 (79)
5 COG3074 Uncharacterized protei 91.1 3.3 7.1E-05 29.4 8.6 53 57-114 1-53 (79)
6 cd07429 Cby_like Chibby, a nuc 88.4 0.83 1.8E-05 34.8 4.2 27 86-112 72-98 (108)
7 PF06698 DUF1192: Protein of u 86.9 1 2.2E-05 30.7 3.6 31 48-78 12-42 (59)
8 PF06156 DUF972: Protein of un 85.5 7.5 0.00016 29.4 8.1 51 59-114 7-57 (107)
9 COG2433 Uncharacterized conser 84.1 16 0.00035 35.6 11.3 84 28-113 420-508 (652)
10 PRK13169 DNA replication intia 84.0 8.9 0.00019 29.2 7.9 49 59-112 7-55 (110)
11 PF01166 TSC22: TSC-22/dip/bun 82.8 3.3 7.1E-05 28.2 4.5 27 82-108 17-43 (59)
12 PF07106 TBPIP: Tat binding pr 81.3 10 0.00023 30.2 7.8 54 27-80 76-132 (169)
13 PRK10884 SH3 domain-containing 78.8 38 0.00082 28.4 11.3 22 30-51 93-114 (206)
14 PF08317 Spc7: Spc7 kinetochor 78.4 48 0.001 29.4 12.4 63 52-114 201-265 (325)
15 PF07926 TPR_MLP1_2: TPR/MLP1/ 78.3 29 0.00062 26.7 10.6 30 82-111 101-130 (132)
16 smart00338 BRLZ basic region l 74.6 23 0.00049 23.7 7.0 41 71-115 15-55 (65)
17 TIGR02449 conserved hypothetic 74.5 26 0.00056 24.3 8.1 51 61-111 1-53 (65)
18 smart00787 Spc7 Spc7 kinetocho 74.2 59 0.0013 29.0 11.2 82 33-114 175-260 (312)
19 KOG0971 Microtubule-associated 72.7 91 0.002 32.2 12.9 89 24-112 326-429 (1243)
20 PF07716 bZIP_2: Basic region 72.6 23 0.0005 23.0 6.8 39 71-113 14-52 (54)
21 KOG4797 Transcriptional regula 71.0 21 0.00046 27.4 6.5 45 64-108 45-89 (123)
22 PRK11637 AmiB activator; Provi 70.3 87 0.0019 28.6 11.8 65 28-101 52-118 (428)
23 PF10211 Ax_dynein_light: Axon 69.0 54 0.0012 27.0 9.1 57 32-94 122-178 (189)
24 PF14662 CCDC155: Coiled-coil 67.7 73 0.0016 26.7 12.5 80 27-117 19-98 (193)
25 KOG0804 Cytoplasmic Zn-finger 67.6 56 0.0012 30.9 9.7 50 59-108 360-411 (493)
26 PF07888 CALCOCO1: Calcium bin 67.4 1.2E+02 0.0027 29.2 12.3 29 83-111 210-238 (546)
27 PF05529 Bap31: B-cell recepto 66.3 50 0.0011 26.7 8.4 55 59-113 124-188 (192)
28 PF00170 bZIP_1: bZIP transcri 65.4 38 0.00082 22.6 6.8 39 72-114 16-54 (64)
29 PRK10884 SH3 domain-containing 65.4 68 0.0015 26.9 9.1 21 27-47 97-117 (206)
30 PF14645 Chibby: Chibby family 64.6 12 0.00025 28.8 4.0 26 86-111 71-96 (116)
31 PF06156 DUF972: Protein of un 62.3 30 0.00064 26.2 5.8 35 80-114 16-50 (107)
32 KOG1962 B-cell receptor-associ 62.2 58 0.0012 27.8 8.1 52 59-110 157-210 (216)
33 PF10473 CENP-F_leu_zip: Leuci 62.1 78 0.0017 25.1 10.0 42 72-114 74-115 (140)
34 KOG4797 Transcriptional regula 61.0 17 0.00036 27.9 4.2 31 80-110 68-98 (123)
35 PF06005 DUF904: Protein of un 58.9 60 0.0013 22.7 6.8 37 78-114 10-46 (72)
36 TIGR02338 gimC_beta prefoldin, 57.5 76 0.0017 23.5 9.6 81 28-114 15-102 (110)
37 PF09789 DUF2353: Uncharacteri 57.5 1.5E+02 0.0032 26.8 10.4 38 73-111 74-111 (319)
38 PF15254 CCDC14: Coiled-coil d 57.3 1.2E+02 0.0026 30.7 10.3 80 25-109 389-478 (861)
39 PRK00888 ftsB cell division pr 57.2 39 0.00085 25.2 5.7 33 81-113 29-61 (105)
40 smart00340 HALZ homeobox assoc 54.8 30 0.00066 22.1 4.0 27 88-114 7-33 (44)
41 PF04849 HAP1_N: HAP1 N-termin 54.2 1.5E+02 0.0033 26.6 9.7 33 84-116 239-271 (306)
42 PF15397 DUF4618: Domain of un 53.8 1.3E+02 0.0028 26.3 9.1 36 79-114 186-221 (258)
43 COG4467 Regulator of replicati 52.9 75 0.0016 24.3 6.6 48 59-111 7-54 (114)
44 PRK09343 prefoldin subunit bet 50.3 1.1E+02 0.0024 23.2 9.6 83 27-115 18-107 (121)
45 PF04977 DivIC: Septum formati 50.3 64 0.0014 21.7 5.6 30 83-112 21-50 (80)
46 PRK13169 DNA replication intia 49.4 43 0.00093 25.5 4.8 34 81-114 17-50 (110)
47 PF04880 NUDE_C: NUDE protein, 49.3 35 0.00077 27.8 4.7 43 62-109 2-47 (166)
48 PF03980 Nnf1: Nnf1 ; InterPr 48.7 70 0.0015 23.5 5.9 37 76-112 70-106 (109)
49 PF14282 FlxA: FlxA-like prote 48.6 1.1E+02 0.0024 22.7 8.1 54 29-99 18-71 (106)
50 PRK13729 conjugal transfer pil 48.5 62 0.0013 30.7 6.7 43 64-111 80-122 (475)
51 PRK09413 IS2 repressor TnpA; R 47.3 1.2E+02 0.0026 22.7 7.1 29 83-111 75-103 (121)
52 PF10186 Atg14: UV radiation r 45.7 1.8E+02 0.0039 24.4 11.1 25 27-51 24-48 (302)
53 PF10504 DUF2452: Protein of u 45.7 1.1E+02 0.0025 24.8 7.0 42 58-99 28-72 (159)
54 KOG3119 Basic region leucine z 45.3 1.2E+02 0.0026 26.3 7.7 43 70-116 203-245 (269)
55 PF07798 DUF1640: Protein of u 45.1 1.6E+02 0.0035 23.6 8.1 52 57-108 44-95 (177)
56 PF13758 Prefoldin_3: Prefoldi 45.0 66 0.0014 24.2 5.1 17 26-42 8-24 (99)
57 PF12718 Tropomyosin_1: Tropom 44.9 1.5E+02 0.0033 23.2 9.4 12 90-101 77-88 (143)
58 KOG0709 CREB/ATF family transc 44.8 26 0.00055 33.1 3.5 68 44-113 223-299 (472)
59 KOG0963 Transcription factor/C 42.8 2.7E+02 0.0059 27.4 10.1 85 30-114 121-210 (629)
60 TIGR02209 ftsL_broad cell divi 42.5 92 0.002 21.5 5.5 33 81-113 26-58 (85)
61 PF02151 UVR: UvrB/uvrC motif; 42.4 69 0.0015 19.1 4.1 33 61-93 3-35 (36)
62 PF04849 HAP1_N: HAP1 N-termin 42.2 40 0.00086 30.2 4.2 54 59-112 96-186 (306)
63 PHA03162 hypothetical protein; 41.4 40 0.00086 26.7 3.6 22 88-109 15-36 (135)
64 PHA03155 hypothetical protein; 41.3 41 0.00089 25.9 3.6 24 88-111 10-33 (115)
65 PF07558 Shugoshin_N: Shugoshi 41.3 37 0.0008 21.7 2.9 32 79-110 14-45 (46)
66 PRK11637 AmiB activator; Provi 40.8 2.9E+02 0.0062 25.2 11.9 78 27-113 44-123 (428)
67 PF14775 NYD-SP28_assoc: Sperm 39.8 82 0.0018 21.2 4.6 23 27-49 37-59 (60)
68 KOG4603 TBP-1 interacting prot 39.3 2.3E+02 0.0049 23.7 8.3 59 20-78 76-137 (201)
69 PF04899 MbeD_MobD: MbeD/MobD 39.0 1.3E+02 0.0029 21.0 8.3 51 64-114 3-56 (70)
70 PF15070 GOLGA2L5: Putative go 38.9 3E+02 0.0065 27.0 10.0 79 27-105 84-186 (617)
71 TIGR02449 conserved hypothetic 38.7 1.3E+02 0.0029 20.8 5.6 31 83-113 4-34 (65)
72 PF06785 UPF0242: Uncharacteri 38.7 3.2E+02 0.0069 25.2 11.2 83 27-116 96-178 (401)
73 PF11365 DUF3166: Protein of u 38.2 84 0.0018 23.4 4.8 30 83-112 12-41 (96)
74 TIGR02894 DNA_bind_RsfA transc 36.9 2.3E+02 0.005 23.1 12.3 60 54-113 77-138 (161)
75 smart00030 CLb CLUSTERIN Beta 36.8 1.9E+02 0.0042 24.4 7.2 60 52-111 7-75 (206)
76 PF04999 FtsL: Cell division p 36.7 1.2E+02 0.0026 21.6 5.5 34 80-113 36-69 (97)
77 smart00338 BRLZ basic region l 35.9 1.3E+02 0.0028 19.9 5.3 28 82-109 36-63 (65)
78 PF10226 DUF2216: Uncharacteri 35.9 1.7E+02 0.0038 24.5 6.8 29 79-107 48-76 (195)
79 PF15243 ANAPC15: Anaphase-pro 35.9 44 0.00096 24.7 3.0 22 60-81 28-49 (92)
80 PF01093 Clusterin: Clusterin; 35.8 1.6E+02 0.0035 27.6 7.3 60 53-112 2-70 (436)
81 PRK09039 hypothetical protein; 35.5 3.3E+02 0.0071 24.4 9.4 47 29-96 136-182 (343)
82 PF04508 Pox_A_type_inc: Viral 35.2 51 0.0011 18.3 2.4 16 31-46 2-17 (23)
83 PRK14127 cell division protein 33.0 1.5E+02 0.0032 22.6 5.5 29 86-114 37-65 (109)
84 KOG4005 Transcription factor X 32.6 2.8E+02 0.006 24.3 7.7 35 74-108 82-119 (292)
85 PF09798 LCD1: DNA damage chec 32.4 2.9E+02 0.0063 27.4 8.7 54 61-114 5-61 (654)
86 COG4467 Regulator of replicati 31.6 75 0.0016 24.4 3.6 30 84-113 20-49 (114)
87 cd00632 Prefoldin_beta Prefold 31.0 2.1E+02 0.0046 20.8 7.8 42 69-111 61-102 (105)
88 TIGR03752 conj_TIGR03752 integ 30.8 4.8E+02 0.01 24.9 10.9 71 30-110 66-140 (472)
89 PRK13923 putative spore coat p 30.7 3E+02 0.0066 22.6 10.0 28 84-111 109-136 (170)
90 PF08995 NIP_1: Necrosis induc 30.7 18 0.00039 25.3 0.2 14 165-178 12-25 (82)
91 KOG0930 Guanine nucleotide exc 30.2 1.6E+02 0.0034 26.6 6.0 38 55-101 9-46 (395)
92 cd01109 HTH_YyaN Helix-Turn-He 30.2 2.2E+02 0.0048 20.8 6.8 53 56-109 57-109 (113)
93 PF12537 DUF3735: Protein of u 30.2 91 0.002 21.5 3.7 25 59-83 47-71 (72)
94 PF07246 Phlebovirus_NSM: Phle 29.8 3.2E+02 0.0069 24.0 7.7 14 97-110 213-226 (264)
95 KOG2391 Vacuolar sorting prote 29.5 3E+02 0.0065 25.2 7.7 60 44-111 217-278 (365)
96 PF08172 CASP_C: CASP C termin 29.5 1.7E+02 0.0037 25.2 6.0 53 28-115 84-136 (248)
97 PF05700 BCAS2: Breast carcino 29.2 3.4E+02 0.0073 22.6 9.9 74 22-100 142-217 (221)
98 KOG4603 TBP-1 interacting prot 28.9 1.7E+02 0.0038 24.3 5.6 14 31-44 80-93 (201)
99 TIGR01950 SoxR redox-sensitive 28.7 2E+02 0.0043 22.4 5.9 54 56-109 57-110 (142)
100 TIGR03545 conserved hypothetic 28.3 5.5E+02 0.012 24.8 10.5 71 25-98 177-256 (555)
101 cd04769 HTH_MerR2 Helix-Turn-H 27.9 2.5E+02 0.0054 20.7 6.1 54 56-109 56-109 (116)
102 cd04787 HTH_HMRTR_unk Helix-Tu 27.8 2.7E+02 0.0059 21.1 6.8 53 56-109 57-109 (133)
103 KOG4643 Uncharacterized coiled 27.5 3.8E+02 0.0082 28.2 8.7 26 87-112 302-327 (1195)
104 KOG4643 Uncharacterized coiled 27.2 2E+02 0.0044 30.1 6.8 78 30-109 257-338 (1195)
105 KOG0652 26S proteasome regulat 26.7 2.3E+02 0.0051 25.6 6.4 41 72-113 21-61 (424)
106 PF12718 Tropomyosin_1: Tropom 26.7 3.1E+02 0.0068 21.4 8.3 51 62-112 82-134 (143)
107 PF04740 LXG: LXG domain of WX 26.4 3.4E+02 0.0073 21.7 8.2 48 28-75 104-153 (204)
108 TIGR00606 rad50 rad50. This fa 26.1 8.1E+02 0.018 26.0 12.6 77 29-109 798-880 (1311)
109 PF12329 TMF_DNA_bd: TATA elem 25.3 2.4E+02 0.0052 19.6 6.5 32 83-114 16-47 (74)
110 COG4026 Uncharacterized protei 24.8 4.7E+02 0.01 22.8 8.3 59 50-111 96-160 (290)
111 PF06937 EURL: EURL protein; 24.7 1E+02 0.0022 27.2 3.8 38 41-78 203-240 (285)
112 KOG3759 Uncharacterized RUN do 24.5 6.5E+02 0.014 24.3 10.6 43 53-98 198-246 (621)
113 PF09744 Jnk-SapK_ap_N: JNK_SA 24.3 3.8E+02 0.0082 21.5 10.0 29 83-111 86-114 (158)
114 TIGR00012 L29 ribosomal protei 23.5 1.4E+02 0.003 19.5 3.5 28 53-80 1-28 (55)
115 KOG4673 Transcription factor T 23.5 7.5E+02 0.016 25.2 9.7 32 78-109 604-635 (961)
116 PRK09514 zntR zinc-responsive 23.3 3.3E+02 0.0071 21.0 6.1 54 56-109 58-111 (140)
117 TIGR02043 ZntR Zn(II)-responsi 23.2 3.3E+02 0.0071 20.7 6.1 53 56-109 58-111 (131)
118 KOG0964 Structural maintenance 23.1 9.1E+02 0.02 25.6 10.5 63 49-112 770-833 (1200)
119 PRK15422 septal ring assembly 23.0 3E+02 0.0064 19.9 5.5 33 79-111 11-43 (79)
120 PF09789 DUF2353: Uncharacteri 22.8 5.7E+02 0.012 23.1 11.4 73 27-113 130-209 (319)
121 cd01282 HTH_MerR-like_sg3 Heli 22.8 3.2E+02 0.0069 20.1 5.8 50 57-107 57-109 (112)
122 PTZ00108 DNA topoisomerase 2-l 22.6 1.4E+02 0.003 32.1 4.9 46 30-75 1102-1147(1388)
123 PF09006 Surfac_D-trimer: Lung 22.5 1E+02 0.0022 20.0 2.5 15 34-48 3-17 (46)
124 PF12128 DUF3584: Protein of u 22.5 7.4E+02 0.016 26.1 10.2 67 25-92 658-724 (1201)
125 PF07889 DUF1664: Protein of u 22.3 3.8E+02 0.0082 20.8 8.0 51 61-111 69-121 (126)
126 PF07888 CALCOCO1: Calcium bin 21.9 7.4E+02 0.016 24.1 11.8 24 28-51 141-164 (546)
127 cd01108 HTH_CueR Helix-Turn-He 21.8 3.5E+02 0.0076 20.3 6.8 53 56-109 57-109 (127)
128 PF08946 Osmo_CC: Osmosensory 21.8 2.4E+02 0.0051 18.3 4.1 22 80-101 20-41 (46)
129 PF11853 DUF3373: Protein of u 21.7 81 0.0017 30.1 2.8 30 85-114 30-59 (489)
130 KOG3584 cAMP response element 21.2 2E+02 0.0044 25.9 5.0 37 72-112 302-338 (348)
131 PF14193 DUF4315: Domain of un 20.8 3.3E+02 0.0072 19.6 6.0 37 80-116 2-38 (83)
132 PLN02372 violaxanthin de-epoxi 20.7 7E+02 0.015 23.6 8.5 43 32-86 363-405 (455)
133 PHA02109 hypothetical protein 20.7 2.9E+02 0.0063 23.1 5.5 47 37-98 171-219 (233)
134 PHA03155 hypothetical protein; 20.6 4E+02 0.0088 20.5 8.6 59 22-80 7-65 (115)
135 COG1422 Predicted membrane pro 20.5 4.1E+02 0.009 22.4 6.5 50 29-93 71-120 (201)
136 COG5415 Predicted integral mem 20.3 1.6E+02 0.0035 25.3 4.0 25 60-84 15-42 (251)
137 smart00787 Spc7 Spc7 kinetocho 20.3 6.2E+02 0.013 22.5 9.7 26 86-111 218-243 (312)
No 1
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.93 E-value=4.7e-25 Score=164.36 Aligned_cols=95 Identities=38% Similarity=0.611 Sum_probs=91.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041834 17 PGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREI 96 (189)
Q Consensus 17 ~~~~~~~~~q~~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~ 96 (189)
+...|..+.+.|+.|+++|+.+++.|+..+|+|+||||++||++||.+||++|+.||++||+||+++|+++|+.|++|+.
T Consensus 6 ~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~ 85 (100)
T PF01486_consen 6 GTDLWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKER 85 (100)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 041834 97 QLQNDNMYLRARISE 111 (189)
Q Consensus 97 ~L~eeN~~Lr~ki~e 111 (189)
.|.++|..|+.+|+|
T Consensus 86 ~l~~en~~L~~~~~e 100 (100)
T PF01486_consen 86 ELEEENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999864
No 2
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=96.94 E-value=0.00023 Score=57.75 Aligned_cols=74 Identities=24% Similarity=0.365 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHH---HhhchhccCCCCCCH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 041834 28 YQQEATKLRRQIREIQN---LNRHILGEALSTLNF-KELKNLEARLEKGIGRVRSKKNEMLLAEIE-FMEKREIQLQND 101 (189)
Q Consensus 28 ~~~E~~kLk~eie~Lq~---~~R~l~GEdL~~Lsl-kEL~~LE~qLE~sL~~IRsrK~qll~~eI~-~LqkKe~~L~ee 101 (189)
+..+...++..++.|+. .+|+++|++|.++++ .+|..+|.+|+.++..+|..+...+.+++. .++.++..+.+.
T Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (195)
T KOG0014|consen 112 KKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSLEAE 190 (195)
T ss_pred hhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhcccc
Confidence 44566777778887764 499999999999999 999999999999999999999999998887 555555544443
No 3
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.61 E-value=0.2 Score=35.38 Aligned_cols=52 Identities=17% Similarity=0.333 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 57 LNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 57 LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
||+.-|.+||.++..++..|.. |..+++.|+.+...|.++|..|+.......
T Consensus 1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6889999999999999999865 445678888887777777777777765544
No 4
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.29 E-value=2.2 Score=30.71 Aligned_cols=46 Identities=20% Similarity=0.397 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 57 LNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRA 107 (189)
Q Consensus 57 LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ 107 (189)
||++=|.+||.++..|+.-| .+|.-+|++|+.|-..|.+++..++.
T Consensus 1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~~~~ 46 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH 46 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888999999999999887 46667788888887777777666433
No 5
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.12 E-value=3.3 Score=29.35 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 57 LNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 57 LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
||++=|.+||.++..|+.-| .|+.-+|++|+.|...|..+-..++...++.++
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 67888999999999999887 577788999998888777776666666555443
No 6
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=88.37 E-value=0.83 Score=34.81 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 86 AEIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 86 ~eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
.++..|+||.+.|+|||++|+-||+-.
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999998643
No 7
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=86.91 E-value=1 Score=30.70 Aligned_cols=31 Identities=42% Similarity=0.549 Sum_probs=23.7
Q ss_pred chhccCCCCCCHHHHHHHHHHHHHHHhHHHH
Q 041834 48 HILGEALSTLNFKELKNLEARLEKGIGRVRS 78 (189)
Q Consensus 48 ~l~GEdL~~LslkEL~~LE~qLE~sL~~IRs 78 (189)
+..|+||+.||+.||..==..|+.=+.|+|.
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEA 42 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999998766666655555553
No 8
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=85.54 E-value=7.5 Score=29.39 Aligned_cols=51 Identities=25% Similarity=0.404 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 59 FKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 59 lkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
+..|.+||++|..-+..|..-|.+ +..|-..-..|.-||..||..+.+...
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~-----~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQ-----LQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356778888888776666665533 334444555666667777777766543
No 9
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.10 E-value=16 Score=35.56 Aligned_cols=84 Identities=24% Similarity=0.326 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 28 YQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRS-----KKNEMLLAEIEFMEKREIQLQNDN 102 (189)
Q Consensus 28 ~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRs-----rK~qll~~eI~~LqkKe~~L~eeN 102 (189)
+..++.++...++.|+..+++|..+ +..|. +++..||.+|+..-.+++. |+-+.+..+|+.|+++...-...-
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~-~ee~k-~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRE-LEELK-REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666665442 11111 8889999999998888873 445667778888888766666666
Q ss_pred HHHHHHHHHHH
Q 041834 103 MYLRARISENE 113 (189)
Q Consensus 103 ~~Lr~ki~e~~ 113 (189)
..|+.++.++.
T Consensus 498 e~L~~~l~~l~ 508 (652)
T COG2433 498 EELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHH
Confidence 67777777655
No 10
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=84.02 E-value=8.9 Score=29.24 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 59 FKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 59 lkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
++-|.+||+++..-+..|..-|.+ +..|-.....|.-||..||.++.+.
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~-----~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQ-----LAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999988877777766643 3355555667777777788888764
No 11
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=82.76 E-value=3.3 Score=28.23 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 82 EMLLAEIEFMEKREIQLQNDNMYLRAR 108 (189)
Q Consensus 82 qll~~eI~~LqkKe~~L~eeN~~Lr~k 108 (189)
+.+.++|.+|..+...|+.||..||..
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667777777777777777777644
No 12
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.29 E-value=10 Score=30.17 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhcc--C-CCCCCHHHHHHHHHHHHHHHhHHHHHH
Q 041834 27 FYQQEATKLRRQIREIQNLNRHILGE--A-LSTLNFKELKNLEARLEKGIGRVRSKK 80 (189)
Q Consensus 27 ~~~~E~~kLk~eie~Lq~~~R~l~GE--d-L~~LslkEL~~LE~qLE~sL~~IRsrK 80 (189)
.+..++..|+.++..|+...+.+..| . ...++..||...=.+|+.-+..+.+|=
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444444444322 1 234556666555444444444444433
No 13
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.79 E-value=38 Score=28.42 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhchhc
Q 041834 30 QEATKLRRQIREIQNLNRHILG 51 (189)
Q Consensus 30 ~E~~kLk~eie~Lq~~~R~l~G 51 (189)
.-+.+|.++++.++..+.++.+
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~ 114 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDN 114 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555443
No 14
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=78.44 E-value=48 Score=29.37 Aligned_cols=63 Identities=27% Similarity=0.394 Sum_probs=50.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 52 EALSTLNFKELKNLEARLEKGIGRVRSKKNEML--LAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 52 EdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll--~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
.+++.+...+|..|-..|..-=..|..+|..+- ..++..++.+...+.++-..+...|.+.++
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348889999999999999998888888877754 577777777788888888888888877664
No 15
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=78.30 E-value=29 Score=26.71 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 82 EMLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 82 qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
..|..+|..+++|...|...|..|..+|..
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788999999999999999999988864
No 16
>smart00338 BRLZ basic region leucin zipper.
Probab=74.60 E-value=23 Score=23.72 Aligned_cols=41 Identities=32% Similarity=0.439 Sum_probs=32.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 71 KGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERA 115 (189)
Q Consensus 71 ~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~~ 115 (189)
.|-.+.|.||.. .+..|..+...|..+|..|+.++......
T Consensus 15 ~aA~~~R~rKk~----~~~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 15 EAARRSRERKKA----EIEELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888765 45688999999999999999999876654
No 17
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=74.45 E-value=26 Score=24.31 Aligned_cols=51 Identities=25% Similarity=0.311 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 61 ELKNLEARLEKGIGRVRSKK--NEMLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 61 EL~~LE~qLE~sL~~IRsrK--~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
||+.||.+|+.=|.....-| +.++..++..++..-..|.+.|..=+.+|+.
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888887777665433 3345555555555545555555555555443
No 18
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=74.20 E-value=59 Score=28.96 Aligned_cols=82 Identities=22% Similarity=0.293 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhhchh--ccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 33 TKLRRQIREIQNLNRHIL--GEALSTLNFKELKNLEARLEKGIGRVRSKKNEML--LAEIEFMEKREIQLQNDNMYLRAR 108 (189)
Q Consensus 33 ~kLk~eie~Lq~~~R~l~--GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll--~~eI~~LqkKe~~L~eeN~~Lr~k 108 (189)
..|+.....|+...+++. -++++.+...||..+-..|..-...|..++.++. .+++..+..+.....+.-..+...
T Consensus 175 ~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~ 254 (312)
T smart00787 175 PKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTE 254 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555544 3568889999999999999998888888777654 566777777777777777777777
Q ss_pred HHHHHH
Q 041834 109 ISENER 114 (189)
Q Consensus 109 i~e~~~ 114 (189)
|.+.++
T Consensus 255 I~~ae~ 260 (312)
T smart00787 255 IAEAEK 260 (312)
T ss_pred HHHHHH
Confidence 777665
No 19
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.66 E-value=91 Score=32.25 Aligned_cols=89 Identities=19% Similarity=0.258 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhch------hccCCCCCCHHHHHHHHHH---HHHHHhHHHHHH------HHHHHHHH
Q 041834 24 NTQFYQQEATKLRRQIREIQNLNRHI------LGEALSTLNFKELKNLEAR---LEKGIGRVRSKK------NEMLLAEI 88 (189)
Q Consensus 24 ~~q~~~~E~~kLk~eie~Lq~~~R~l------~GEdL~~LslkEL~~LE~q---LE~sL~~IRsrK------~qll~~eI 88 (189)
..+.+|+|+..++.+++.|...+-=| .|-|....|--++.+||.| |-.+|-|.|.-- .+.+.+++
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kel 405 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKEL 405 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34578899998888887776543221 3778888888889999865 666887777321 22344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 89 EFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 89 ~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
+..+.....|...-..|.+++...
T Consensus 406 E~k~sE~~eL~r~kE~Lsr~~d~a 429 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERLSRELDQA 429 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444555554443
No 20
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=72.61 E-value=23 Score=22.95 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=29.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 71 KGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 71 ~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
.|..+-|.||-+ .+..|..+...|..+|..|+.+|....
T Consensus 14 ~AA~r~R~rkk~----~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 14 EAARRSRQRKKQ----REEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666644 356888889999999999999987754
No 21
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=71.04 E-value=21 Score=27.37 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 64 NLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRAR 108 (189)
Q Consensus 64 ~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~k 108 (189)
.+.+++|.|+.-|.+-=+=-..++++-|+.+..+|.+.|..|++.
T Consensus 45 aIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 45 AIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777766643322222356666666666666666665554
No 22
>PRK11637 AmiB activator; Provisional
Probab=70.31 E-value=87 Score=28.61 Aligned_cols=65 Identities=18% Similarity=0.318 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 041834 28 YQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNE--MLLAEIEFMEKREIQLQND 101 (189)
Q Consensus 28 ~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~q--ll~~eI~~LqkKe~~L~ee 101 (189)
.++++..+.+++..++..++.+ .++|..|+.+|...-.+|+....+ .+..+|..++++...++++
T Consensus 52 l~~qi~~~~~~i~~~~~~~~~~---------~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 52 IQQDIAAKEKSVRQQQQQRASL---------LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555443 345777777777777776655443 3345555555544444333
No 23
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=69.04 E-value=54 Score=26.96 Aligned_cols=57 Identities=26% Similarity=0.420 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041834 32 ATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKR 94 (189)
Q Consensus 32 ~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkK 94 (189)
...+..+|..|+...+.|..+ +.+|..--..+++.....|....+...++|+.|++.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~------~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQ------VQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444331 233333333333333334444444445555544443
No 24
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=67.68 E-value=73 Score=26.70 Aligned_cols=80 Identities=24% Similarity=0.302 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 27 FYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLR 106 (189)
Q Consensus 27 ~~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr 106 (189)
.+..|..+|+..|+.+.....+| |++ +..|.+++... +==..+...+.+++++|+.--..|+++|+.|-
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L-~~e--------~~~L~~q~~s~--Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~ 87 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQL-AEE--------ITDLRKQLKSL--QQALQKAKALEEELEDLKTLAKSLEEENRSLL 87 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888777777664 333 33444444322 11223455677788888888788888888777
Q ss_pred HHHHHHHHHHH
Q 041834 107 ARISENERAQQ 117 (189)
Q Consensus 107 ~ki~e~~~~~~ 117 (189)
.+-...++.++
T Consensus 88 aq~rqlEkE~q 98 (193)
T PF14662_consen 88 AQARQLEKEQQ 98 (193)
T ss_pred HHHHHHHHHHH
Confidence 77666555443
No 25
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.58 E-value=56 Score=30.88 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 59 FKELKNLEARLEK--GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRAR 108 (189)
Q Consensus 59 lkEL~~LE~qLE~--sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~k 108 (189)
++|...|++.+.. +.++|-.+|-+.+...+..+++....+.|+|+.|++-
T Consensus 360 ~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 360 ITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555544443 5667778888888999999999999999999988763
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=67.42 E-value=1.2e+02 Score=29.25 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 83 MLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 83 ll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
.|..+...+..+...|.++...|..+..+
T Consensus 210 ~L~~q~~e~~~ri~~LEedi~~l~qk~~E 238 (546)
T PF07888_consen 210 SLKEQLAEARQRIRELEEDIKTLTQKEKE 238 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666655543
No 27
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=66.33 E-value=50 Score=26.75 Aligned_cols=55 Identities=27% Similarity=0.270 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 59 FKELKNLEARLEKGIGRVRS----------KKNEMLLAEIEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 59 lkEL~~LE~qLE~sL~~IRs----------rK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
+.+|..+|..++.+-++..+ .+.....++|+.++++......+-..|+++.+...
T Consensus 124 i~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 124 IKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777776666543 24455678888888887777777778887776554
No 28
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=65.42 E-value=38 Score=22.58 Aligned_cols=39 Identities=23% Similarity=0.406 Sum_probs=28.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 72 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 72 sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
|-.+.|.||... |..|..+...|..+|..|+..+.....
T Consensus 16 AAr~~R~RKk~~----~~~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 16 AARRSRQRKKQY----IEELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777654 467888888888888888877766543
No 29
>PRK10884 SH3 domain-containing protein; Provisional
Probab=65.35 E-value=68 Score=26.88 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 041834 27 FYQQEATKLRRQIREIQNLNR 47 (189)
Q Consensus 27 ~~~~E~~kLk~eie~Lq~~~R 47 (189)
.+++|++.|+.++..+....-
T Consensus 97 ~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 466667777766666665544
No 30
>PF14645 Chibby: Chibby family
Probab=64.65 E-value=12 Score=28.75 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 86 AEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 86 ~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
.....++++.+.|.|||++|+-|++-
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~el 96 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIEL 96 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788889999999999999753
No 31
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=62.32 E-value=30 Score=26.15 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 80 KNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 80 K~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
....|.++|..|+.....|.++|..|+-.......
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999988776543
No 32
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=62.20 E-value=58 Score=27.76 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 59 FKELKNLEARLEKGIGRVR--SKKNEMLLAEIEFMEKREIQLQNDNMYLRARIS 110 (189)
Q Consensus 59 lkEL~~LE~qLE~sL~~IR--srK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~ 110 (189)
..|+..||..++.--+..- ..|..-|..+.+.+++....|-|+|..|+.+|.
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 4566666666665544433 233345566777777777777777777777763
No 33
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=62.12 E-value=78 Score=25.09 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=29.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 72 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 72 sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
-|..+|+-|..+. ..+..++.|+..|.--|..+...|...+.
T Consensus 74 EL~~l~sEk~~L~-k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 74 ELDTLRSEKENLD-KELQKKQEKVSELESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556777775543 46777888888888888888877766543
No 34
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=61.03 E-value=17 Score=27.95 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 80 KNEMLLAEIEFMEKREIQLQNDNMYLRARIS 110 (189)
Q Consensus 80 K~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~ 110 (189)
-.+.+.++|.+|..|...|+.||..|+.-+.
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3568889999999999999999999987653
No 35
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.88 E-value=60 Score=22.75 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 78 SKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 78 srK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
..|.+-..+.|..|+.+...|.++|..|.....+...
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~ 46 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEELKE 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3577888899999999999999999999977766544
No 36
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.53 E-value=76 Score=23.51 Aligned_cols=81 Identities=23% Similarity=0.343 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHH--HHHHHHHHhHH--HHHHHHH---HHHHHHHHHHHHHHHHH
Q 041834 28 YQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNL--EARLEKGIGRV--RSKKNEM---LLAEIEFMEKREIQLQN 100 (189)
Q Consensus 28 ~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~L--E~qLE~sL~~I--RsrK~ql---l~~eI~~LqkKe~~L~e 100 (189)
+++++..+..++..|+...+.. .+.+++|..| ...+=++++.| +..|..+ +.+.|+.+..+...|.+
T Consensus 15 ~q~~~~~l~~q~~~le~~~~E~------~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek 88 (110)
T TIGR02338 15 LQQQLQAVATQKQQVEAQLKEA------EKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQR 88 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555432 2445555555 23333333332 2222222 23444555555555666
Q ss_pred HHHHHHHHHHHHHH
Q 041834 101 DNMYLRARISENER 114 (189)
Q Consensus 101 eN~~Lr~ki~e~~~ 114 (189)
.-.+|+.++.+.+.
T Consensus 89 ~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 89 QEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666554
No 37
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=57.52 E-value=1.5e+02 Score=26.77 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 73 IGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 73 L~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
|...|.+ +.-+..+++.|++|..+++.+++.||.+++.
T Consensus 74 L~~sre~-Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 74 LSESREQ-NKKLKEEVEELRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence 3444433 3456778999999999999999999998754
No 38
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=57.32 E-value=1.2e+02 Score=30.73 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhch-hcc--------CCCCCCHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041834 25 TQFYQQEATKLRRQIREIQNLNRHI-LGE--------ALSTLNFKEL-KNLEARLEKGIGRVRSKKNEMLLAEIEFMEKR 94 (189)
Q Consensus 25 ~q~~~~E~~kLk~eie~Lq~~~R~l-~GE--------dL~~LslkEL-~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkK 94 (189)
.|-++.|-+-||.++..|...+|.- ..+ +++-+++.-| .-|+.||..+++..- ++...-++|-|-
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e-----~lq~kneellk~ 463 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQE-----LLQSKNEELLKV 463 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHH-----HHHHhHHHHHHH
Confidence 3457788888998888888777752 122 2333333333 235677766665432 222223333333
Q ss_pred HHHHHHHHHHHHHHH
Q 041834 95 EIQLQNDNMYLRARI 109 (189)
Q Consensus 95 e~~L~eeN~~Lr~ki 109 (189)
...+.+||+.|+..+
T Consensus 464 ~e~q~~Enk~~~~~~ 478 (861)
T PF15254_consen 464 IENQKEENKRLRKMF 478 (861)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555544443
No 39
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=57.16 E-value=39 Score=25.22 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 81 NEMLLAEIEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 81 ~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
...+..++..++++...+..+|..|+.+|....
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566788888888888889999988887654
No 40
>smart00340 HALZ homeobox associated leucin zipper.
Probab=54.85 E-value=30 Score=22.11 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 88 IEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 88 I~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
-+.|++=-..|.++|+.|++.+++...
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357788888999999999999998743
No 41
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=54.16 E-value=1.5e+02 Score=26.56 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 84 LLAEIEFMEKREIQLQNDNMYLRARISENERAQ 116 (189)
Q Consensus 84 l~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~~~ 116 (189)
+..+|-.+++|.+.+.-+|..|...+.+....+
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q 271 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQQHLQASKESQ 271 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 456777888999999999999999887765443
No 42
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=53.81 E-value=1.3e+02 Score=26.28 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 79 KKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 79 rK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
+.++.|..+|..-++-+..+.++...|+..|.....
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777776543
No 43
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=52.93 E-value=75 Score=24.34 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 59 FKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 59 lkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
++.+.+||.+|-.-+..|-.-|.+ +..|-.....|+-||..||.++.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~-----l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQH-----LGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhHHHHhhHHHHHHHhCC
Confidence 455678888887665554444432 222333333444455555555544
No 44
>PRK09343 prefoldin subunit beta; Provisional
Probab=50.32 E-value=1.1e+02 Score=23.24 Aligned_cols=83 Identities=27% Similarity=0.341 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHH--HHHHHHHhH--HHHHHHHH---HHHHHHHHHHHHHHHH
Q 041834 27 FYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLE--ARLEKGIGR--VRSKKNEM---LLAEIEFMEKREIQLQ 99 (189)
Q Consensus 27 ~~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE--~qLE~sL~~--IRsrK~ql---l~~eI~~LqkKe~~L~ 99 (189)
.+++++..+..+...|+...|.. .+.++||..|+ ..+=+++.+ |+.-|.++ +.+.++.+..+...|.
T Consensus 18 ~lq~~l~~~~~q~~~le~q~~e~------~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~le 91 (121)
T PRK09343 18 QLQQQLERLLQQKSQIDLELREI------NKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLE 91 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666555543 35677777776 345555655 44444444 3456666666677777
Q ss_pred HHHHHHHHHHHHHHHH
Q 041834 100 NDNMYLRARISENERA 115 (189)
Q Consensus 100 eeN~~Lr~ki~e~~~~ 115 (189)
..-.+|+.++.+.+..
T Consensus 92 kq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 92 KQEKKLREKLKELQAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777776553
No 45
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=50.26 E-value=64 Score=21.73 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 83 MLLAEIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 83 ll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
-+..+|..++++...+..+|..|..++...
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445678899999999999999999999876
No 46
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=49.43 E-value=43 Score=25.51 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 81 NEMLLAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 81 ~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
...|..++..|+.....|.++|..|+-.-.....
T Consensus 17 l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 17 LGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999887655433
No 47
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=49.26 E-value=35 Score=27.82 Aligned_cols=43 Identities=26% Similarity=0.485 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 041834 62 LKNLEARLEKGIGRVRSKKNEMLLAEI---EFMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 62 L~~LE~qLE~sL~~IRsrK~qll~~eI---~~LqkKe~~L~eeN~~Lr~ki 109 (189)
|..+|.+|..+|.+ +-+|..|| +.|+-+.+.|.+|=+.|+..+
T Consensus 2 LeD~EsklN~AIER-----nalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIER-----NALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999998875 34444444 444444555555555555554
No 48
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=48.73 E-value=70 Score=23.49 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 76 VRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 76 IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
||+.=......+++.|..+...+..+|..|...|.+.
T Consensus 70 i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 70 IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555667788999999999999999999999765
No 49
>PF14282 FlxA: FlxA-like protein
Probab=48.65 E-value=1.1e+02 Score=22.72 Aligned_cols=54 Identities=22% Similarity=0.412 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 29 QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQ 99 (189)
Q Consensus 29 ~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~ 99 (189)
-..+..|+++|..|+..+..+... .+|+.++ +..|.++|..+|..|+.....++
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~---------------k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQD--SDLDAEQ---------------KQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc--cCCCHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999887763 3345443 34566777778877777655443
No 50
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=48.47 E-value=62 Score=30.72 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 64 NLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 64 ~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
+||++|+.- | +-.++|..+...+++|...+..+|..|+.++..
T Consensus 80 ELEKqLaaL----r-qElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 80 QMQKQYEEI----R-RELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHH----H-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 445555543 2 222466677788899999999999999999843
No 51
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=47.26 E-value=1.2e+02 Score=22.74 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 83 MLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 83 ll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
-+.++|..|+++...|..||..|++.+.-
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999877654
No 52
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=45.71 E-value=1.8e+02 Score=24.38 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhc
Q 041834 27 FYQQEATKLRRQIREIQNLNRHILG 51 (189)
Q Consensus 27 ~~~~E~~kLk~eie~Lq~~~R~l~G 51 (189)
..+.++..++...+.|+...-..+.
T Consensus 24 ~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 24 ELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777776666655
No 53
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=45.70 E-value=1.1e+02 Score=24.79 Aligned_cols=42 Identities=19% Similarity=0.379 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 041834 58 NFKELKNLEARLEKGIGRVRSK---KNEMLLAEIEFMEKREIQLQ 99 (189)
Q Consensus 58 slkEL~~LE~qLE~sL~~IRsr---K~qll~~eI~~LqkKe~~L~ 99 (189)
+..||..|=+++++|..-||.+ |-.+|.+||..|+..-+.+.
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~il 72 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKIL 72 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999864 66678888888877654433
No 54
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=45.35 E-value=1.2e+02 Score=26.32 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=31.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 70 EKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQ 116 (189)
Q Consensus 70 E~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~~~ 116 (189)
..|+++=|.+..+.. .+++.|...|..+|..||.+|.+.....
T Consensus 203 N~A~~kSR~~~k~~~----~e~~~r~~~leken~~lr~~v~~l~~el 245 (269)
T KOG3119|consen 203 NEAVRKSRDKRKQKE----DEMAHRVAELEKENEALRTQVEQLKKEL 245 (269)
T ss_pred hHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554443333 7889999999999999999999876543
No 55
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=45.14 E-value=1.6e+02 Score=23.62 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 57 LNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRAR 108 (189)
Q Consensus 57 LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~k 108 (189)
.+-.|+.+++..+..++..+|+--.-+-..++..++.....|..+-..|+.+
T Consensus 44 vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~ 95 (177)
T PF07798_consen 44 VTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQE 95 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888886554444444444444444444443333333
No 56
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=45.05 E-value=66 Score=24.16 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041834 26 QFYQQEATKLRRQIREI 42 (189)
Q Consensus 26 q~~~~E~~kLk~eie~L 42 (189)
+.|..||.-||.+|+.|
T Consensus 8 q~w~aEYe~LKEEi~~l 24 (99)
T PF13758_consen 8 QTWEAEYEGLKEEIEAL 24 (99)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 35778888899988888
No 57
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=44.89 E-value=1.5e+02 Score=23.23 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 041834 90 FMEKREIQLQND 101 (189)
Q Consensus 90 ~LqkKe~~L~ee 101 (189)
.|.+|...|.++
T Consensus 77 ~l~rriq~LEee 88 (143)
T PF12718_consen 77 QLNRRIQLLEEE 88 (143)
T ss_pred HHHhhHHHHHHH
Confidence 444444444333
No 58
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=44.78 E-value=26 Score=33.10 Aligned_cols=68 Identities=21% Similarity=0.219 Sum_probs=34.6
Q ss_pred HHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 44 NLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLL---------AEIEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 44 ~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~---------~eI~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
..-+.+++. ++.++-+.--|=+.=|..|++||.+=..... +-|+.|..|+..-..+|+.|.+|+.+.+
T Consensus 223 eeEkrLL~k--EG~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le 299 (472)
T KOG0709|consen 223 EEEKRLLTK--EGYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELE 299 (472)
T ss_pred HHHHHHHHh--ccCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHh
Confidence 333444442 3456666666667777888888743222221 2233333333344445555555555544
No 59
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=42.79 E-value=2.7e+02 Score=27.39 Aligned_cols=85 Identities=21% Similarity=0.245 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHhhchhccCCCCCCH-HHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 30 QEATKLRRQIREIQNLNRHILGEALSTLNF-KELKNLEARLEKGIGR----VRSKKNEMLLAEIEFMEKREIQLQNDNMY 104 (189)
Q Consensus 30 ~E~~kLk~eie~Lq~~~R~l~GEdL~~Lsl-kEL~~LE~qLE~sL~~----IRsrK~qll~~eI~~LqkKe~~L~eeN~~ 104 (189)
.|..+|+.+++.+....-.+.+-++.-..+ +.|..+|..++..+.. +-....+=..+....|+..+..+.+.|..
T Consensus 121 ~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~ 200 (629)
T KOG0963|consen 121 EENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEE 200 (629)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888777777776666544443 3456666666666553 33333444445555666666667777777
Q ss_pred HHHHHHHHHH
Q 041834 105 LRARISENER 114 (189)
Q Consensus 105 Lr~ki~e~~~ 114 (189)
+..+|..++.
T Consensus 201 le~ki~~lq~ 210 (629)
T KOG0963|consen 201 LEKKISSLQS 210 (629)
T ss_pred HHHHHHHHHH
Confidence 7777665543
No 60
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=42.48 E-value=92 Score=21.49 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 81 NEMLLAEIEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 81 ~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
...+..++..++++...++.+|..|+.++....
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 446778899999999999999999999998754
No 61
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=42.40 E-value=69 Score=19.08 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 041834 61 ELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEK 93 (189)
Q Consensus 61 EL~~LE~qLE~sL~~IRsrK~qll~~eI~~Lqk 93 (189)
.+..|+..++.+...-+--+.-.+.++|..|++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 467788888888888888888888888877765
No 62
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=42.19 E-value=40 Score=30.19 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhHHH------HHHHHHHH-------------------------------HHHHHHHHHHHHHHHH
Q 041834 59 FKELKNLEARLEKGIGRVR------SKKNEMLL-------------------------------AEIEFMEKREIQLQND 101 (189)
Q Consensus 59 lkEL~~LE~qLE~sL~~IR------srK~qll~-------------------------------~eI~~LqkKe~~L~ee 101 (189)
......||.+|..+...|. +.|++|+. -.++.|++|.+.|+++
T Consensus 96 ~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeE 175 (306)
T PF04849_consen 96 SERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEE 175 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHH
Confidence 3677789999999888887 45555532 1258899999999999
Q ss_pred HHHHHHHHHHH
Q 041834 102 NMYLRARISEN 112 (189)
Q Consensus 102 N~~Lr~ki~e~ 112 (189)
|..||......
T Consensus 176 N~~LR~Ea~~L 186 (306)
T PF04849_consen 176 NEQLRSEASQL 186 (306)
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 63
>PHA03162 hypothetical protein; Provisional
Probab=41.38 E-value=40 Score=26.66 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041834 88 IEFMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 88 I~~LqkKe~~L~eeN~~Lr~ki 109 (189)
+++|..+...|+-||+.|+++|
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 64
>PHA03155 hypothetical protein; Provisional
Probab=41.30 E-value=41 Score=25.90 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 88 IEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 88 I~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
.++|..+...|+-||+.|++++..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 577888888999999999999854
No 65
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=41.27 E-value=37 Score=21.70 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 79 KKNEMLLAEIEFMEKREIQLQNDNMYLRARIS 110 (189)
Q Consensus 79 rK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~ 110 (189)
|.+..+...|..|.++...|..+|..||.++.
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ----------------HHHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 44566777888999999999999999998764
No 66
>PRK11637 AmiB activator; Provisional
Probab=40.78 E-value=2.9e+02 Score=25.24 Aligned_cols=78 Identities=13% Similarity=0.117 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 041834 27 FYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNE--MLLAEIEFMEKREIQLQNDNMY 104 (189)
Q Consensus 27 ~~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~q--ll~~eI~~LqkKe~~L~eeN~~ 104 (189)
..+.+...+++++..++..+..+ -+++..++.+|+..-.+|.....+ -+..+|..++++...++.+=..
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~---------~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQ---------QQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777666543 246666777766666666555443 3556666666666666666666
Q ss_pred HHHHHHHHH
Q 041834 105 LRARISENE 113 (189)
Q Consensus 105 Lr~ki~e~~ 113 (189)
++.+|....
T Consensus 115 ~q~~l~~~~ 123 (428)
T PRK11637 115 LEQQQAAQE 123 (428)
T ss_pred HHHHHHHHH
Confidence 666665544
No 67
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=39.83 E-value=82 Score=21.22 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhch
Q 041834 27 FYQQEATKLRRQIREIQNLNRHI 49 (189)
Q Consensus 27 ~~~~E~~kLk~eie~Lq~~~R~l 49 (189)
.+.+|...|++++..|+.-+.+.
T Consensus 37 ~l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 37 ALIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46678889999999998877765
No 68
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=39.32 E-value=2.3e+02 Score=23.66 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=42.1
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHhhchhcc--CCC-CCCHHHHHHHHHHHHHHHhHHHH
Q 041834 20 ITEANTQFYQQEATKLRRQIREIQNLNRHILGE--ALS-TLNFKELKNLEARLEKGIGRVRS 78 (189)
Q Consensus 20 ~~~~~~q~~~~E~~kLk~eie~Lq~~~R~l~GE--dL~-~LslkEL~~LE~qLE~sL~~IRs 78 (189)
+++.+.+.+..++.+|..++..|+.+.|.+-.| .|+ .|++.|++.=-+.|..-+.--|.
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~e 137 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRE 137 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 344556677888899999999999988887665 343 48888888777777665544443
No 69
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=38.99 E-value=1.3e+02 Score=20.96 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 64 NLEARLEKGIGRVR---SKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 64 ~LE~qLE~sL~~IR---srK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
.||.+|..|+..+- ++.-+-.......|+..-..-..+|..|+.++.....
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~ 56 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQ 56 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 68999998887665 5666677788888888877777788888888777654
No 70
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=38.86 E-value=3e+02 Score=26.99 Aligned_cols=79 Identities=28% Similarity=0.376 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhc--cCCCCCC---HHHHHHHHHHHHHHHhHHHHH-------------------HHH
Q 041834 27 FYQQEATKLRRQIREIQNLNRHILG--EALSTLN---FKELKNLEARLEKGIGRVRSK-------------------KNE 82 (189)
Q Consensus 27 ~~~~E~~kLk~eie~Lq~~~R~l~G--EdL~~Ls---lkEL~~LE~qLE~sL~~IRsr-------------------K~q 82 (189)
.++.|+..|+++++.|...+.-..- +.|+-|. -.-|..||..|+..-...+.+ -++
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~ 163 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR 163 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH
Confidence 5788888899999888765443221 1222221 112444555554443333322 145
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041834 83 MLLAEIEFMEKREIQLQNDNMYL 105 (189)
Q Consensus 83 ll~~eI~~LqkKe~~L~eeN~~L 105 (189)
-|.+++.+|+.+-..|.++|..|
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~el 186 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMEL 186 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHh
Confidence 56778888888777777777433
No 71
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=38.70 E-value=1.3e+02 Score=20.78 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 83 MLLAEIEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 83 ll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
-+.+.|+.|=..-..|..+|..|+.++....
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~ 34 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWR 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888889999888876543
No 72
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=38.68 E-value=3.2e+02 Score=25.16 Aligned_cols=83 Identities=20% Similarity=0.223 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 27 FYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLR 106 (189)
Q Consensus 27 ~~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr 106 (189)
.-+.|...|+.+.+.|-+.+=|.-| + +-.-..=-++||..+.+.+.++. .+.-+++.+++.-.+-.|++..|-
T Consensus 96 e~q~e~~qL~~qnqkL~nqL~~~~~--v----f~k~k~~~q~LE~li~~~~EEn~-~lqlqL~~l~~e~~Ekeeesq~Ln 168 (401)
T PF06785_consen 96 ERQQESEQLQSQNQKLKNQLFHVRE--V----FMKTKGDIQHLEGLIRHLREENQ-CLQLQLDALQQECGEKEEESQTLN 168 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH--H----HHHhcchHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHhHhHHHHHHHH
Confidence 3456777777777777666655433 1 00111112445556666666654 445577888887777888888888
Q ss_pred HHHHHHHHHH
Q 041834 107 ARISENERAQ 116 (189)
Q Consensus 107 ~ki~e~~~~~ 116 (189)
+.++|.-+.+
T Consensus 169 rELaE~layq 178 (401)
T PF06785_consen 169 RELAEALAYQ 178 (401)
T ss_pred HHHHHHHHHH
Confidence 8877755443
No 73
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=38.24 E-value=84 Score=23.41 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 83 MLLAEIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 83 ll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
+..++-+-|+|+...+.++|..|...+...
T Consensus 12 FvEEEa~LlRRkl~ele~eN~~l~~EL~ky 41 (96)
T PF11365_consen 12 FVEEEAELLRRKLSELEDENKQLTEELNKY 41 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888888888888777554
No 74
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.87 E-value=2.3e+02 Score=23.07 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 54 LSTLNFKELKNLEARLEKGIGRVRSK--KNEMLLAEIEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 54 L~~LslkEL~~LE~qLE~sL~~IRsr--K~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
...|++.+....=+++.........- -++-+..++..|+.+...|..+|..|..++...+
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799998877777777654433322 2346677888899999999999998888876554
No 75
>smart00030 CLb CLUSTERIN Beta chain.
Probab=36.84 E-value=1.9e+02 Score=24.45 Aligned_cols=60 Identities=17% Similarity=0.271 Sum_probs=32.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 52 EALSTLNFKELKNLEARLEKGIGRVRSKK---------NEMLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 52 EdL~~LslkEL~~LE~qLE~sL~~IRsrK---------~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
++|..||..-=.-+.+++++||.-|..-| .+-|+..++.-+++-....+.-+....|++|
T Consensus 7 ~~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E 75 (206)
T smart00030 7 NELQEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKE 75 (206)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555667788888887776555 3345555555554322222222333444544
No 76
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=36.73 E-value=1.2e+02 Score=21.62 Aligned_cols=34 Identities=32% Similarity=0.371 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 80 KNEMLLAEIEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 80 K~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
....+..+++.+++....|.++|..|+-+++...
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455667799999999999999999999887654
No 77
>smart00338 BRLZ basic region leucin zipper.
Probab=35.94 E-value=1.3e+02 Score=19.91 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 82 EMLLAEIEFMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 82 qll~~eI~~LqkKe~~L~eeN~~Lr~ki 109 (189)
+.|..+...|+.+...|..++..|+..+
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455567777777777777777776654
No 78
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=35.88 E-value=1.7e+02 Score=24.49 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 79 KKNEMLLAEIEFMEKREIQLQNDNMYLRA 107 (189)
Q Consensus 79 rK~qll~~eI~~LqkKe~~L~eeN~~Lr~ 107 (189)
|+-|....+|..|+.-.+.|+++|..||.
T Consensus 48 rrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 48 RRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666667777777665
No 79
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=35.88 E-value=44 Score=24.70 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 041834 60 KELKNLEARLEKGIGRVRSKKN 81 (189)
Q Consensus 60 kEL~~LE~qLE~sL~~IRsrK~ 81 (189)
.||.++|++-+.+|..|+.+=+
T Consensus 28 ~EL~~~Eq~~q~Wl~sI~ekd~ 49 (92)
T PF15243_consen 28 TELQQQEQQHQAWLQSIAEKDN 49 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4788999999999888886643
No 80
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=35.82 E-value=1.6e+02 Score=27.65 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 53 ALSTLNFKELKNLEARLEKGIGRVRSKK---------NEMLLAEIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 53 dL~~LslkEL~~LE~qLE~sL~~IRsrK---------~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
+|..||..--+-+.+++++||.-|..-| .+-|+..++..+++-......=+....+++|.
T Consensus 2 ~Lk~lS~~GekyvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~ 70 (436)
T PF01093_consen 2 NLKELSEQGEKYVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEE 70 (436)
T ss_pred chHHHhHhCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555667777777777765444 44555666666554333333333444555543
No 81
>PRK09039 hypothetical protein; Validated
Probab=35.49 E-value=3.3e+02 Score=24.42 Aligned_cols=47 Identities=28% Similarity=0.310 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041834 29 QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREI 96 (189)
Q Consensus 29 ~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~ 96 (189)
+.++..|+.+|+.|+.. |..||..|+.+=.+.+..+ .+|+.|+++..
T Consensus 136 ~~~V~~L~~qI~aLr~Q----------------la~le~~L~~ae~~~~~~~-----~~i~~L~~~L~ 182 (343)
T PRK09039 136 LAQVELLNQQIAALRRQ----------------LAALEAALDASEKRDRESQ-----AKIADLGRRLN 182 (343)
T ss_pred hHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 34566677777777655 8888888888777775554 34555555543
No 82
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=35.18 E-value=51 Score=18.31 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 041834 31 EATKLRRQIREIQNLN 46 (189)
Q Consensus 31 E~~kLk~eie~Lq~~~ 46 (189)
|+.+||.+|..|++.+
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6677888888777654
No 83
>PRK14127 cell division protein GpsB; Provisional
Probab=32.96 E-value=1.5e+02 Score=22.57 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 86 AEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 86 ~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
+.++.+.+....|.++|..|+.++.+.+.
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888899999999888765
No 84
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=32.61 E-value=2.8e+02 Score=24.32 Aligned_cols=35 Identities=31% Similarity=0.312 Sum_probs=18.7
Q ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 74 GRVRSKKNEM---LLAEIEFMEKREIQLQNDNMYLRAR 108 (189)
Q Consensus 74 ~~IRsrK~ql---l~~eI~~LqkKe~~L~eeN~~Lr~k 108 (189)
-.-|.||... |..+|.+|-..-..|..+|..||.+
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666443 3455555555555555555555554
No 85
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=32.38 E-value=2.9e+02 Score=27.38 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 61 ELKNLEARLEKGIGRVRSKKNEM---LLAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 61 EL~~LE~qLE~sL~~IRsrK~ql---l~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
.|..|+++-+.=+...+.+++++ ..++++.||.-.+.|++|.++|.........
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~ 61 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSS 61 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47788888888788888777664 3688899999999999999999888766543
No 86
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=31.57 E-value=75 Score=24.35 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 84 LLAEIEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 84 l~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
+..+|..|++....+.+||..|+-.....-
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 457899999999999999999998766543
No 87
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=30.97 E-value=2.1e+02 Score=20.82 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=21.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 69 LEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 69 LE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
.+.++..+-.++ +.+...|..+.++...+..+=..|+.+|.+
T Consensus 61 ~~ea~~~Le~~~-e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 61 KEEARTELKERL-ETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334443333 334445555666666565555556555554
No 88
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.85 E-value=4.8e+02 Score=24.88 Aligned_cols=71 Identities=21% Similarity=0.351 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 30 QEATKLRRQIREIQNLNRHILGEALSTLNFKELKN----LEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 105 (189)
Q Consensus 30 ~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~----LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~L 105 (189)
-++..+++++..|...++.+.-|+ +.|++ +..+++.++...| +-+..+++.|+.....++..-..|
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN------~~L~~r~~~id~~i~~av~~~~----~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAEN------ERLQKREQSIDQQIQQAVQSET----QELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhhhHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544433 23333 5555666655544 334445556655555555555555
Q ss_pred HHHHH
Q 041834 106 RARIS 110 (189)
Q Consensus 106 r~ki~ 110 (189)
..++.
T Consensus 136 ~~~l~ 140 (472)
T TIGR03752 136 QRRLA 140 (472)
T ss_pred HHHHh
Confidence 55553
No 89
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=30.69 E-value=3e+02 Score=22.55 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 84 LLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 84 l~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
+.++|..++.+...|..+|..|+.+..-
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~ 136 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAI 136 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777654
No 90
>PF08995 NIP_1: Necrosis inducing protein-1; InterPro: IPR015087 Necrosis inducing protein-1, a fungal avirulence protein produced by plants, consists of two parts containing beta-sheets of two and three anti-parallel strands, respectively. Five intramolecular disulphide bonds, stabilise these parts and their position with respect to each other, providing a high level of stability []. ; PDB: 1KG1_A.
Probab=30.68 E-value=18 Score=25.26 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=0.0
Q ss_pred CccccccCCchhhh
Q 041834 165 PLQLVIAASTSEIC 178 (189)
Q Consensus 165 ~Lqlg~~~~~~~~~ 178 (189)
.||+|+..|+-..|
T Consensus 12 flqiglvfstpdrc 25 (82)
T PF08995_consen 12 FLQIGLVFSTPDRC 25 (82)
T ss_dssp --------------
T ss_pred hhhheeEecCCCce
Confidence 45666666666555
No 91
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.25 E-value=1.6e+02 Score=26.57 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 55 STLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQND 101 (189)
Q Consensus 55 ~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~ee 101 (189)
.+||..|-..| -+||.||.+|+ ++|+.|+....+..++
T Consensus 9 ~~Ls~~E~~eL--------~~ir~rk~qL~-deIq~Lk~Ei~ev~~e 46 (395)
T KOG0930|consen 9 NDLSEEERMEL--------ENIRRRKQELL-DEIQRLKDEIAEVMEE 46 (395)
T ss_pred CCCCHHHHHhH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 45777765554 46999998876 5888888877766554
No 92
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.21 E-value=2.2e+02 Score=20.83 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 56 TLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 56 ~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki 109 (189)
++|++|...+=.....+-..+. .-..++.+++..+.++...|...-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIP-ERLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999998876433222111121 1234556666666666655555555555444
No 93
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=30.20 E-value=91 Score=21.53 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 041834 59 FKELKNLEARLEKGIGRVRSKKNEM 83 (189)
Q Consensus 59 lkEL~~LE~qLE~sL~~IRsrK~ql 83 (189)
-.|+..+|++|......+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999998764
No 94
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=29.84 E-value=3.2e+02 Score=24.04 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 041834 97 QLQNDNMYLRARIS 110 (189)
Q Consensus 97 ~L~eeN~~Lr~ki~ 110 (189)
.+.++++.|+.++.
T Consensus 213 ~lr~~~~~l~~el~ 226 (264)
T PF07246_consen 213 GLRNESKWLEHELS 226 (264)
T ss_pred hhHHHHHHHHHHHH
Confidence 34444444444444
No 95
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.46 E-value=3e+02 Score=25.22 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=31.4
Q ss_pred HHhhchhccCCCCCC--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 44 NLNRHILGEALSTLN--FKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 44 ~~~R~l~GEdL~~Ls--lkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
...|..+-|.++.++ ..+|..-|..|-.+..+++. .++.|.+....|...-..|..|++|
T Consensus 217 eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~--------~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVA--------MKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHH--------HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334444444444433 34455555555555444443 3355556666666666667777766
No 96
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.45 E-value=1.7e+02 Score=25.21 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 28 YQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRA 107 (189)
Q Consensus 28 ~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ 107 (189)
....=+++|.++..|+...|+. ..+|..|+.....|+..|..|-.
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~-----------------------------------~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQ-----------------------------------QQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777777666553 23678889999999999999999
Q ss_pred HHHHHHHH
Q 041834 108 RISENERA 115 (189)
Q Consensus 108 ki~e~~~~ 115 (189)
||.-....
T Consensus 129 KiRylqSY 136 (248)
T PF08172_consen 129 KIRYLQSY 136 (248)
T ss_pred HHHHHhhC
Confidence 99776543
No 97
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=29.25 E-value=3.4e+02 Score=22.64 Aligned_cols=74 Identities=24% Similarity=0.318 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 041834 22 EANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNE--MLLAEIEFMEKREIQLQ 99 (189)
Q Consensus 22 ~~~~q~~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~q--ll~~eI~~LqkKe~~L~ 99 (189)
+.....++.++.+++++|+.+...-+..=-+ .-.+|..||.+-..+++++-..... -|..+|..++++...+.
T Consensus 142 e~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~-----~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 142 EAMLKRLEKELAKLKKEIEEVNRERKRRQEE-----AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred H
Q 041834 100 N 100 (189)
Q Consensus 100 e 100 (189)
+
T Consensus 217 ~ 217 (221)
T PF05700_consen 217 E 217 (221)
T ss_pred c
No 98
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.93 E-value=1.7e+02 Score=24.33 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 041834 31 EATKLRRQIREIQN 44 (189)
Q Consensus 31 E~~kLk~eie~Lq~ 44 (189)
|...|..+|..|+.
T Consensus 80 el~~ld~~i~~l~e 93 (201)
T KOG4603|consen 80 ELQVLDGKIVALTE 93 (201)
T ss_pred HHHHHhHHHHHHHH
Confidence 33344444444433
No 99
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=28.69 E-value=2e+02 Score=22.41 Aligned_cols=54 Identities=17% Similarity=0.041 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 56 TLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 56 ~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki 109 (189)
++|++|+..+=..+...-...-..-..++.+++..+..+...|...-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 399999888766543221111112223555566666666666665555555554
No 100
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=28.32 E-value=5.5e+02 Score=24.80 Aligned_cols=71 Identities=14% Similarity=0.267 Sum_probs=42.0
Q ss_pred hHHHHHHHHHH--HHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHH
Q 041834 25 TQFYQQEATKL--RRQIREIQNLNRHILGEALSTLNFKELKNLEARLE-------KGIGRVRSKKNEMLLAEIEFMEKRE 95 (189)
Q Consensus 25 ~q~~~~E~~kL--k~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE-------~sL~~IRsrK~qll~~eI~~LqkKe 95 (189)
.+.|.+.+..| +.+++..+.....+...++.+ +.++.+.-..++ .-...|++-|+++-. ..+.+++..
T Consensus 177 ~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~--p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~-~~~~~~~~~ 253 (555)
T TIGR03545 177 QQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKN--PLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQN-DKKQLKADL 253 (555)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHH
Confidence 34677777777 777888888888877766553 445555555555 555555555544432 334444444
Q ss_pred HHH
Q 041834 96 IQL 98 (189)
Q Consensus 96 ~~L 98 (189)
..|
T Consensus 254 ~~l 256 (555)
T TIGR03545 254 AEL 256 (555)
T ss_pred HHH
Confidence 444
No 101
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.86 E-value=2.5e+02 Score=20.73 Aligned_cols=54 Identities=19% Similarity=0.019 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 56 TLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 56 ~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki 109 (189)
+++++|+..+=...+.+-..+-..-..++.+++..+.++...+...-..|..++
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFE 109 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888887744433221011111123444444555555444444444444443
No 102
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=27.76 E-value=2.7e+02 Score=21.09 Aligned_cols=53 Identities=11% Similarity=0.211 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 56 TLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 56 ~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki 109 (189)
++|++|+..+=...+.+-... ..-.+++..++..+.++...|...-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAV 109 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 399999888744332221111 11235666777777777766666555555555
No 103
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=27.53 E-value=3.8e+02 Score=28.23 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 87 EIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 87 eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
+|-.+++|...+..++...+.|+++.
T Consensus 302 eiiqlkqkl~dm~~erdtdr~kteeL 327 (1195)
T KOG4643|consen 302 EIIQLKQKLDDMRSERDTDRHKTEEL 327 (1195)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33334444444444444444444443
No 104
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=27.16 E-value=2e+02 Score=30.07 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHH-HH-hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 30 QEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEK-GI-GRVR--SKKNEMLLAEIEFMEKREIQLQNDNMYL 105 (189)
Q Consensus 30 ~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~-sL-~~IR--srK~qll~~eI~~LqkKe~~L~eeN~~L 105 (189)
.+...++.+++.|...+|-|+.+- .|==.+|+.|+.+=|. .+ +.|- ..|-.-|..+.+..+.|-..|++||..|
T Consensus 257 mDs~fykdRveelkedN~vLleek--eMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstL 334 (1195)
T KOG4643|consen 257 MDSDFYKDRVEELKEDNRVLLEEK--EMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTL 334 (1195)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 455666777777777766654321 0101122223222211 00 0111 2344466777888899999999999988
Q ss_pred HHHH
Q 041834 106 RARI 109 (189)
Q Consensus 106 r~ki 109 (189)
.-.-
T Consensus 335 q~q~ 338 (1195)
T KOG4643|consen 335 QVQK 338 (1195)
T ss_pred HHHH
Confidence 6554
No 105
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=26.72 E-value=2.3e+02 Score=25.57 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=31.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 72 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 72 sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
+...|++ ++.+|..+|.-|+.....+.-++..+..+|.++.
T Consensus 21 ste~i~~-rtrlldnEirI~~sev~ri~he~~~~~ekIkeN~ 61 (424)
T KOG0652|consen 21 STEEIIS-RTRLLDNEIRIMKSEVQRINHELQAMKEKIKENT 61 (424)
T ss_pred cHHHHHH-HHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 4444443 4678888888888888888888888888888765
No 106
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=26.70 E-value=3.1e+02 Score=21.42 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 62 LKNLEARLEKGIGRVRSKKNEML--LAEIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 62 L~~LE~qLE~sL~~IRsrK~qll--~~eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
++.||..|+.+=.+++..-..+= ....+.+-|++..|..+...+..|+.+.
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44455555555444443333222 2333455555555555555555555544
No 107
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.36 E-value=3.4e+02 Score=21.69 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhcc--CCCCCCHHHHHHHHHHHHHHHhH
Q 041834 28 YQQEATKLRRQIREIQNLNRHILGE--ALSTLNFKELKNLEARLEKGIGR 75 (189)
Q Consensus 28 ~~~E~~kLk~eie~Lq~~~R~l~GE--dL~~LslkEL~~LE~qLE~sL~~ 75 (189)
+...+.+++..++.+.......+++ |+-+++.-....+...++.+.++
T Consensus 104 l~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~ 153 (204)
T PF04740_consen 104 LKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKK 153 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHH
Confidence 3455666777777777777666664 56555555555555555444433
No 108
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.08 E-value=8.1e+02 Score=26.00 Aligned_cols=77 Identities=12% Similarity=0.145 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 041834 29 QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKK------NEMLLAEIEFMEKREIQLQNDN 102 (189)
Q Consensus 29 ~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK------~qll~~eI~~LqkKe~~L~eeN 102 (189)
..++..++.+++.|.....-..+ ..++++|+.-=..++.-+..++..- .+-+..+|..|+.++..+....
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~----~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~k 873 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDL----DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEK 873 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655553222 2366665544444444444443211 2233456666666655555555
Q ss_pred HHHHHHH
Q 041834 103 MYLRARI 109 (189)
Q Consensus 103 ~~Lr~ki 109 (189)
..+..++
T Consensus 874 lkl~~~l 880 (1311)
T TIGR00606 874 LQIGTNL 880 (1311)
T ss_pred HHHHHHH
Confidence 4444443
No 109
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=25.27 E-value=2.4e+02 Score=19.61 Aligned_cols=32 Identities=41% Similarity=0.511 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 83 MLLAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 83 ll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
.|+++.+.|-+++..+.+..+.||.++.+.+.
T Consensus 16 ~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~ 47 (74)
T PF12329_consen 16 QLMEEGEKLSKKELKLNNTIKKLRAKIKELEK 47 (74)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666655543
No 110
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.79 E-value=4.7e+02 Score=22.80 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=28.2
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 50 LGEALSTLNFKELKNLEARLEKGIGRVRSKKNE------MLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 50 ~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~q------ll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
.|-|+..+.++ -.++.|.+||-|---+--+ =|.+..++++.|...++.+|..|...+.+
T Consensus 96 iGHDvEhiD~e---lvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~elee 160 (290)
T COG4026 96 IGHDVEHIDVE---LVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEE 160 (290)
T ss_pred CCCCccccCHH---HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677776653 3444555444322111111 23334455555555555555555555443
No 111
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=24.68 E-value=1e+02 Score=27.24 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=30.7
Q ss_pred HHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHH
Q 041834 41 EIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRS 78 (189)
Q Consensus 41 ~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRs 78 (189)
.+++.+++..=|+|.+|++.||++|=.+|-.-+..|-.
T Consensus 203 ~~~~r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfe 240 (285)
T PF06937_consen 203 SLQRRHPHYSREELNSMTLDELKQLNEKLLQQIQDVFE 240 (285)
T ss_pred cccccccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 45777888899999999999999998888766555543
No 112
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=24.46 E-value=6.5e+02 Score=24.31 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhHHH---HHHHHHH---HHHHHHHHHHHHHH
Q 041834 53 ALSTLNFKELKNLEARLEKGIGRVR---SKKNEML---LAEIEFMEKREIQL 98 (189)
Q Consensus 53 dL~~LslkEL~~LE~qLE~sL~~IR---srK~qll---~~eI~~LqkKe~~L 98 (189)
||+.||.+||+ +|++.||+++- .-|.||. ..||.+|.+=...|
T Consensus 198 ~i~~lsteelr---~qVD~A~~q~VnP~k~KeQLV~QLkTQItDLErFInFl 246 (621)
T KOG3759|consen 198 DIDKLSTEELR---RQVDDALKQLVNPFKEKEQLVDQLKTQITDLERFINFL 246 (621)
T ss_pred CcccccHHHHH---HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888888765 68999998864 3455543 34444444443333
No 113
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=24.32 E-value=3.8e+02 Score=21.54 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 83 MLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 83 ll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
.+..+...|..+...|+++|+.|..++..
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455667778888888888888877643
No 114
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=23.54 E-value=1.4e+02 Score=19.51 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=21.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhHHHHHH
Q 041834 53 ALSTLNFKELKNLEARLEKGIGRVRSKK 80 (189)
Q Consensus 53 dL~~LslkEL~~LE~qLE~sL~~IRsrK 80 (189)
||-.+|.+||...-..+...|-..|-.+
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~~ 28 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQK 28 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556888888888888888887777544
No 115
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=23.47 E-value=7.5e+02 Score=25.16 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 78 SKKNEMLLAEIEFMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 78 srK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki 109 (189)
.||.+.|..+|..|+++...-..-|..|-..+
T Consensus 604 arrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 604 ARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555666666665555554444444433
No 116
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=23.32 E-value=3.3e+02 Score=21.01 Aligned_cols=54 Identities=11% Similarity=0.064 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 56 TLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 56 ~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki 109 (189)
++|++|+..+=......-..--.....++..++..+.++...|...-..|...+
T Consensus 58 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (140)
T PRK09514 58 GFTLEEIRELLSIRLDPEHHTCQEVKGIVDEKLAEVEAKIAELQHMRRSLQRLN 111 (140)
T ss_pred CCCHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888887643221100000112235666777777777776666555555444
No 117
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=23.19 E-value=3.3e+02 Score=20.67 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 56 TLNFKELKNLEARLEK-GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 56 ~LslkEL~~LE~qLE~-sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki 109 (189)
+++++|...+=..... +-... ..-..++..++..++++...|..--..|...+
T Consensus 58 G~sl~eI~~~l~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (131)
T TIGR02043 58 GFTLDEIKELLSIKLDATEHSC-AEVKAIVDAKLELVDEKINELTKIRRSLKKLS 111 (131)
T ss_pred CCCHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899998886653211 10011 12235677777777777777666555555544
No 118
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.10 E-value=9.1e+02 Score=25.55 Aligned_cols=63 Identities=29% Similarity=0.325 Sum_probs=40.7
Q ss_pred hhccCC-CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 49 ILGEAL-STLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 49 l~GEdL-~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
.+|-++ +.|+++|++.|.+ |..-+..+--+...+..+.|+-+.+|-..-.+.|..|..++.+.
T Consensus 770 el~sel~sqLt~ee~e~l~k-Ln~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l 833 (1200)
T KOG0964|consen 770 ELGSELFSQLTPEELERLSK-LNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNEL 833 (1200)
T ss_pred HHhHHHHhhcCHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 367676 7788888888875 55555555555666666666655566555555666666666554
No 119
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.97 E-value=3e+02 Score=19.86 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 79 KKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 79 rK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
.|-+-..+.|.-||-....|.+.|..|...+..
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778899999999999999999999998876
No 120
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=22.83 E-value=5.7e+02 Score=23.05 Aligned_cols=73 Identities=25% Similarity=0.332 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHH---HHHHH
Q 041834 27 FYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFM----EKR---EIQLQ 99 (189)
Q Consensus 27 ~~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~L----qkK---e~~L~ 99 (189)
.+-..+.+++.+++.|+...+-++. |.+.|-..-+ +=.-|.+-+..++..+ ..+ ...|.
T Consensus 130 ~lV~qLEk~~~q~~qLe~d~qs~lD---------EkeEl~~ERD-----~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi 195 (319)
T PF09789_consen 130 DLVEQLEKLREQIEQLERDLQSLLD---------EKEELVTERD-----AYKCKAHRLNHELNYILNGDENRIVDIDALI 195 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCCCCcccHHHHH
Confidence 3445555566666666655555443 2222221111 2233444444455444 122 44678
Q ss_pred HHHHHHHHHHHHHH
Q 041834 100 NDNMYLRARISENE 113 (189)
Q Consensus 100 eeN~~Lr~ki~e~~ 113 (189)
.||++|+.+|...+
T Consensus 196 ~ENRyL~erl~q~q 209 (319)
T PF09789_consen 196 MENRYLKERLKQLQ 209 (319)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888886544
No 121
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.75 E-value=3.2e+02 Score=20.10 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 57 LNFKELKNLEARLEKGI---GRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRA 107 (189)
Q Consensus 57 LslkEL~~LE~qLE~sL---~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ 107 (189)
+|++|+..+=...+.+- ... ....+++.+++..+..+...|...-..|..
T Consensus 57 ~sl~eI~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 109 (112)
T cd01282 57 LTLEEIREFLPCLRGGEPTFRPC-PDLLAVLRRELARIDRQIADLTRSRDRLDA 109 (112)
T ss_pred CCHHHHHHHHHHhhCCCccCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887654433221 111 112355555555555555555544444443
No 122
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=22.57 E-value=1.4e+02 Score=32.15 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhH
Q 041834 30 QEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGR 75 (189)
Q Consensus 30 ~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~ 75 (189)
.++.+|.++++.++..+..|..-....|..+||..|+..++.....
T Consensus 1102 e~v~kL~~e~~~~~~e~~~L~~~t~~~lw~~DL~~~~~~~~~~~~~ 1147 (1388)
T PTZ00108 1102 EKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEV 1147 (1388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999876443
No 123
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=22.52 E-value=1e+02 Score=20.03 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhc
Q 041834 34 KLRRQIREIQNLNRH 48 (189)
Q Consensus 34 kLk~eie~Lq~~~R~ 48 (189)
-||++++.|+...|+
T Consensus 3 aLrqQv~aL~~qv~~ 17 (46)
T PF09006_consen 3 ALRQQVEALQGQVQR 17 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555544444
No 124
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.51 E-value=7.4e+02 Score=26.08 Aligned_cols=67 Identities=22% Similarity=0.311 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 041834 25 TQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFME 92 (189)
Q Consensus 25 ~q~~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~Lq 92 (189)
.+.++.+...++.++.......+.-..+.+..+. .++..+.++++..+..++..+.++-++.....+
T Consensus 658 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~ 724 (1201)
T PF12128_consen 658 LQRLKNEREQLKQEIEEAKEERKEQIEEQLNELE-EELKQLKQELEELLEELKEQLKELRNELKAQWQ 724 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666655553 356666666666666666666655544433333
No 125
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.35 E-value=3.8e+02 Score=20.83 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 61 ELKNLEARLEKGIGRVRSKKNEML--LAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 61 EL~~LE~qLE~sL~~IRsrK~qll--~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
-|..|..+||....-+...|+++. .+.++.++.....++..=..|..||.+
T Consensus 69 RId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455544444444444432 233333333333333333334444433
No 126
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=21.95 E-value=7.4e+02 Score=24.07 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhc
Q 041834 28 YQQEATKLRRQIREIQNLNRHILG 51 (189)
Q Consensus 28 ~~~E~~kLk~eie~Lq~~~R~l~G 51 (189)
++..+.+..++.+.|......+.+
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~ 164 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEE 164 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445444444444
No 127
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=21.82 E-value=3.5e+02 Score=20.29 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 56 TLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 56 ~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki 109 (189)
+||++|+..+=...+.+-... ..-..++..++..+.++...|...-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 109 (127)
T cd01108 57 GFSLEEIRELLALWRDPSRAS-ADVKALALEHIAELERKIAELQAMRRTLQQLA 109 (127)
T ss_pred CCCHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999888643322211111 11124666667777776666665555555444
No 128
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=21.75 E-value=2.4e+02 Score=18.29 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041834 80 KNEMLLAEIEFMEKREIQLQND 101 (189)
Q Consensus 80 K~qll~~eI~~LqkKe~~L~ee 101 (189)
|-+=+-.+|.+|++|...|...
T Consensus 20 kiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 20 KIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3344567788888776666544
No 129
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.69 E-value=81 Score=30.07 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 85 LAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 85 ~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
+++|+.|+++...|+++-..|..+|...+.
T Consensus 30 ~qkie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 30 LQKIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 338999999999999998888888877665
No 130
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=21.24 E-value=2e+02 Score=25.85 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=29.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 72 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 72 sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
|-+..|.||.+. |..|..++..|+++|+.|-.++...
T Consensus 302 AARECRRKKKEY----VKCLENRVAVLENQNKaLIEELKtL 338 (348)
T KOG3584|consen 302 AARECRRKKKEY----VKCLENRVAVLENQNKALIEELKTL 338 (348)
T ss_pred HHHHHHHhHhHH----HHHHHhHHHHHhcccHHHHHHHHHH
Confidence 566677777665 4689999999999999997776544
No 131
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=20.79 E-value=3.3e+02 Score=19.59 Aligned_cols=37 Identities=32% Similarity=0.275 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 80 KNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQ 116 (189)
Q Consensus 80 K~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~~~ 116 (189)
|-+.+..+|+..+.|...++...+.|..+..|.++..
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~E 38 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAENLE 38 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788888888888888888888887766543
No 132
>PLN02372 violaxanthin de-epoxidase
Probab=20.74 E-value=7e+02 Score=23.59 Aligned_cols=43 Identities=19% Similarity=0.372 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041834 32 ATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLA 86 (189)
Q Consensus 32 ~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~ 86 (189)
+++|-+.++..++.+ ++|..++|.+|+.-+.+|+..-..++..
T Consensus 363 ~~~l~~~~e~~e~~i------------~~e~~~~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 363 LERLEKDVEEGEKTI------------VKEARQIEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555443 5679999999999999998876666544
No 133
>PHA02109 hypothetical protein
Probab=20.65 E-value=2.9e+02 Score=23.12 Aligned_cols=47 Identities=28% Similarity=0.453 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhchhccCCCCCC--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 37 RQIREIQNLNRHILGEALSTLN--FKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQL 98 (189)
Q Consensus 37 ~eie~Lq~~~R~l~GEdL~~Ls--lkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L 98 (189)
.+|+.++ |...||.|++|+ ++++-.||..|| .+.++...+|.|...+
T Consensus 171 E~ID~~~---~~~t~~~L~~~~~~L~~I~~L~~ki~------------~LS~E~~Q~~~Ki~N~ 219 (233)
T PHA02109 171 ERIDQVE---RSHTGENLEGLTDKLKQISELTIKLE------------ALSDEACQVKHKILNL 219 (233)
T ss_pred HHHHHHH---hccchhhhhhhhHHHHhhHHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence 3444444 566889988887 666666666554 4555666666664433
No 134
>PHA03155 hypothetical protein; Provisional
Probab=20.61 E-value=4e+02 Score=20.51 Aligned_cols=59 Identities=12% Similarity=0.056 Sum_probs=42.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHH
Q 041834 22 EANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKK 80 (189)
Q Consensus 22 ~~~~q~~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK 80 (189)
+...+.+..|+.+|+-++..|.+.+++=.+.+=..|+..+=+-+=...-.+|...=++|
T Consensus 7 ~~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 7 CADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK 65 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466788999999999999999998866655566777766666555555555554444
No 135
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.48 E-value=4.1e+02 Score=22.40 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 041834 29 QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEK 93 (189)
Q Consensus 29 ~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~Lqk 93 (189)
+.++.+++++...+|...|...-+ +-+..|+++++++.+.+.+|-+-++-
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~---------------~d~~~lkkLq~~qmem~~~Q~elmk~ 120 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQES---------------GDMKKLKKLQEKQMEMMDDQRELMKM 120 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---------------CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666544321 22345666666676666666554443
No 136
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=20.29 E-value=1.6e+02 Score=25.29 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=17.1
Q ss_pred HHHHHHHHHH---HHHHhHHHHHHHHHH
Q 041834 60 KELKNLEARL---EKGIGRVRSKKNEML 84 (189)
Q Consensus 60 kEL~~LE~qL---E~sL~~IRsrK~qll 84 (189)
.||..||.|+ +.+++++|+.+.++.
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~ 42 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQ 42 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777554 457888888886654
No 137
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.27 E-value=6.2e+02 Score=22.51 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 86 AEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 86 ~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
.+|...+++...++++-..+..+|.+
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~ 243 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIED 243 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
Done!