Query 041834
Match_columns 189
No_of_seqs 198 out of 1150
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 19:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jee_A YIIU; FTSZ, septum, coi 93.9 0.74 2.5E-05 32.3 9.5 47 57-108 3-49 (81)
2 2w6a_A ARF GTPase-activating p 84.4 6.8 0.00023 25.8 8.6 53 55-107 8-62 (63)
3 2dgc_A Protein (GCN4); basic d 83.0 4.3 0.00015 26.8 6.3 38 72-113 20-57 (63)
4 1ci6_A Transcription factor AT 82.3 7.3 0.00025 25.5 7.2 41 72-116 13-53 (63)
5 2v71_A Nuclear distribution pr 81.2 19 0.00066 28.8 12.3 88 20-113 7-115 (189)
6 2wt7_A Proto-oncogene protein 80.5 8.4 0.00029 25.1 7.0 41 72-116 13-53 (63)
7 1t2k_D Cyclic-AMP-dependent tr 78.2 9.9 0.00034 24.5 6.8 40 72-115 12-51 (61)
8 1dh3_A Transcription factor CR 78.1 9.2 0.00031 24.4 6.4 38 72-113 12-49 (55)
9 2oqq_A Transcription factor HY 77.5 8.5 0.00029 23.6 5.7 26 84-109 15-40 (42)
10 1jnm_A Proto-oncogene C-JUN; B 76.9 12 0.00042 24.2 6.9 40 72-115 12-51 (62)
11 1dip_A Delta-sleep-inducing pe 76.7 3.9 0.00013 28.2 4.5 26 82-107 18-43 (78)
12 2dfs_A Myosin-5A; myosin-V, in 74.2 19 0.00065 35.8 10.5 83 28-113 958-1043(1080)
13 2yy0_A C-MYC-binding protein; 72.9 7.8 0.00027 24.7 5.0 28 83-110 23-50 (53)
14 3oja_B Anopheles plasmodium-re 70.5 57 0.002 29.0 12.1 21 27-47 460-480 (597)
15 3hnw_A Uncharacterized protein 69.9 33 0.0011 25.8 9.6 51 64-114 79-131 (138)
16 1j1d_C Troponin I, TNI; THIN f 69.0 35 0.0012 25.8 9.8 54 31-84 27-85 (133)
17 1go4_E MAD1 (mitotic arrest de 66.7 27 0.00092 25.2 7.3 14 96-109 78-91 (100)
18 1gd2_E Transcription factor PA 66.2 27 0.00092 23.5 7.2 44 71-114 18-64 (70)
19 3s9g_A Protein hexim1; cyclin 65.9 35 0.0012 24.7 8.3 25 85-109 64-88 (104)
20 1hjb_A Ccaat/enhancer binding 65.5 30 0.001 24.2 7.2 41 72-116 26-66 (87)
21 3nmd_A CGMP dependent protein 61.8 35 0.0012 23.2 8.0 51 54-111 15-65 (72)
22 3na7_A HP0958; flagellar bioge 59.1 71 0.0024 25.9 10.6 41 58-98 88-130 (256)
23 1gu4_A CAAT/enhancer binding p 58.1 42 0.0014 23.0 7.2 41 72-116 26-66 (78)
24 1a93_B MAX protein, coiled coi 55.5 21 0.00072 20.9 4.0 25 78-102 6-30 (34)
25 1j1e_C Troponin I, TNI; THIN f 53.5 82 0.0028 24.9 8.9 68 31-98 27-105 (180)
26 1go4_E MAD1 (mitotic arrest de 50.2 27 0.00091 25.2 4.8 31 86-116 12-42 (100)
27 1ytz_T Troponin T; muscle, THI 49.3 37 0.0013 24.6 5.6 32 53-84 38-69 (107)
28 3hnw_A Uncharacterized protein 49.0 81 0.0028 23.6 11.5 70 28-111 66-135 (138)
29 2yy0_A C-MYC-binding protein; 47.4 26 0.00089 22.2 4.0 28 20-47 16-43 (53)
30 2zqm_A Prefoldin beta subunit 47.1 70 0.0024 22.3 7.7 42 69-111 68-109 (117)
31 1j1d_B Troponin T, TNT; THIN f 46.9 34 0.0012 24.8 5.0 32 53-84 38-69 (106)
32 3gp4_A Transcriptional regulat 44.4 93 0.0032 23.0 8.9 58 56-114 59-116 (142)
33 3oja_B Anopheles plasmodium-re 44.2 1.7E+02 0.0058 25.9 12.4 30 81-110 525-554 (597)
34 1ci6_A Transcription factor AT 42.7 66 0.0023 20.7 5.8 32 80-111 31-62 (63)
35 1p9i_A Cortexillin I/GCN4 hybr 40.9 34 0.0011 19.0 3.2 19 95-113 8-26 (31)
36 1am9_A Srebp-1A, protein (ster 39.0 57 0.002 22.0 5.0 27 87-113 51-77 (82)
37 3s9g_A Protein hexim1; cyclin 37.7 1.1E+02 0.0038 22.0 10.2 62 26-108 33-94 (104)
38 2aze_A Transcription factor DP 37.5 1.4E+02 0.0048 23.0 8.1 46 58-105 3-48 (155)
39 3anw_B GINS23, putative unchar 37.3 57 0.002 25.6 5.3 48 32-80 82-131 (171)
40 3na7_A HP0958; flagellar bioge 36.9 1.6E+02 0.0056 23.6 10.8 43 4-51 76-118 (256)
41 1e52_A Excinuclease ABC subuni 35.8 29 0.001 22.8 2.9 42 53-94 13-58 (63)
42 3m9b_A Proteasome-associated A 34.6 58 0.002 27.1 5.2 26 80-105 69-94 (251)
43 2jee_A YIIU; FTSZ, septum, coi 33.4 1.2E+02 0.004 20.9 6.6 34 79-112 13-46 (81)
44 1t2k_D Cyclic-AMP-dependent tr 32.5 96 0.0033 19.6 5.5 29 81-109 31-59 (61)
45 1uii_A Geminin; human, DNA rep 32.2 1.2E+02 0.0041 21.0 5.7 27 83-109 50-76 (83)
46 3thf_A Protein shroom; coiled- 31.4 1E+02 0.0036 24.6 6.0 38 73-114 10-47 (190)
47 1deb_A APC protein, adenomatou 31.2 92 0.0031 19.7 4.5 24 90-113 7-30 (54)
48 3twe_A Alpha4H; unknown functi 31.2 66 0.0022 17.3 3.7 20 28-47 6-25 (27)
49 1gk7_A Vimentin; intermediate 30.7 86 0.0029 18.5 5.0 27 84-110 11-37 (39)
50 3gpv_A Transcriptional regulat 30.0 1.7E+02 0.0057 21.6 8.3 57 56-113 73-129 (148)
51 3u1c_A Tropomyosin alpha-1 cha 29.4 1.5E+02 0.005 20.8 9.1 13 87-99 87-99 (101)
52 2v71_A Nuclear distribution pr 28.4 2.2E+02 0.0076 22.5 9.7 35 79-113 123-157 (189)
53 1q08_A Zn(II)-responsive regul 27.1 1.4E+02 0.0049 19.9 7.0 54 56-110 16-70 (99)
54 1nkp_B MAX protein, MYC proto- 26.9 1.2E+02 0.0041 20.2 5.0 20 90-109 58-77 (83)
55 2eqb_B RAB guanine nucleotide 26.8 1.7E+02 0.0059 20.8 10.1 19 30-48 5-23 (97)
56 2oxj_A Hybrid alpha/beta pepti 26.7 82 0.0028 18.3 3.4 25 88-112 3-27 (34)
57 3o0z_A RHO-associated protein 26.2 2.3E+02 0.0079 22.0 9.4 35 80-114 98-132 (168)
58 1m1j_C Fibrinogen gamma chain; 26.1 1.7E+02 0.006 25.8 7.1 25 28-52 46-70 (409)
59 3vkg_A Dynein heavy chain, cyt 26.0 4.7E+02 0.016 29.4 11.5 52 60-111 2014-2067(3245)
60 3m48_A General control protein 26.0 72 0.0024 18.4 3.0 24 89-112 3-26 (33)
61 2l5g_B Putative uncharacterize 25.9 1.2E+02 0.004 18.5 4.9 37 57-101 2-38 (42)
62 2zxx_A Geminin; coiled-coil, c 25.7 1.2E+02 0.004 20.9 4.6 32 81-112 36-67 (79)
63 3q4f_C DNA repair protein XRCC 25.2 77 0.0026 25.2 4.1 24 85-108 160-183 (186)
64 2oqq_A Transcription factor HY 25.0 1.2E+02 0.0041 18.4 5.1 30 88-117 5-34 (42)
65 1g6u_A Domain swapped dimer; d 24.6 1.2E+02 0.0042 18.3 6.9 21 55-75 15-35 (48)
66 1t6f_A Geminin; coiled-coil, c 24.6 1.1E+02 0.0039 17.9 4.5 26 81-106 9-34 (37)
67 1wlq_A Geminin; coiled-coil; 2 24.1 1.6E+02 0.0055 20.4 5.2 31 81-111 40-70 (83)
68 2w6b_A RHO guanine nucleotide 23.1 1.5E+02 0.0053 18.9 5.5 32 84-115 8-39 (56)
69 3a7p_A Autophagy protein 16; c 22.5 2.6E+02 0.009 21.4 9.5 20 89-108 113-132 (152)
70 3w03_C DNA repair protein XRCC 22.1 1.5E+02 0.0052 23.4 5.3 30 83-112 149-178 (184)
71 1nkp_A C-MYC, MYC proto-oncoge 22.0 1.9E+02 0.0066 19.7 5.3 17 96-112 69-85 (88)
72 2k48_A Nucleoprotein; viral pr 21.5 2.3E+02 0.008 20.4 7.0 22 61-82 43-64 (107)
73 1nlw_A MAD protein, MAX dimeri 21.0 2E+02 0.0067 19.3 5.2 26 87-112 48-73 (80)
74 2wvr_A Geminin; DNA replicatio 20.6 1.9E+02 0.0066 23.3 5.7 32 81-112 117-148 (209)
75 2lw9_A Unconventionnal myosin- 20.5 78 0.0027 19.9 2.6 35 30-65 6-40 (51)
76 3qh9_A Liprin-beta-2; coiled-c 20.4 2.2E+02 0.0075 19.6 6.2 36 77-112 17-52 (81)
No 1
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.87 E-value=0.74 Score=32.34 Aligned_cols=47 Identities=19% Similarity=0.399 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 57 LNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRAR 108 (189)
Q Consensus 57 LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~k 108 (189)
||++=|.+||.++..++..| .+|..+|++|+.|-..|..+|..++..
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~~ 49 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQ 49 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78889999999999999887 566778889998888888888775553
No 2
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=84.38 E-value=6.8 Score=25.85 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 55 STLNFKELKNLEARLEKGIGRVR--SKKNEMLLAEIEFMEKREIQLQNDNMYLRA 107 (189)
Q Consensus 55 ~~LslkEL~~LE~qLE~sL~~IR--srK~qll~~eI~~LqkKe~~L~eeN~~Lr~ 107 (189)
++.++.|-.++-+-|-.|=.+|- -+=+.-|.+++.-||++...|+-+|..||.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 45677777777777777666664 233556788999999999999999999974
No 3
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=83.03 E-value=4.3 Score=26.78 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=30.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 72 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 72 sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
|-.+.|.||.+ .+..|..+...|..+|..|+..+....
T Consensus 20 AArrsR~RK~~----~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 20 AARRSRARKLQ----RMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888855 456899999999999999999887654
No 4
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=82.25 E-value=7.3 Score=25.53 Aligned_cols=41 Identities=27% Similarity=0.274 Sum_probs=32.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 72 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQ 116 (189)
Q Consensus 72 sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~~~ 116 (189)
|..+-|.+|. +.+..|..+...|..+|..|+.+|.......
T Consensus 13 AA~R~R~KKk----~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 13 AATRYRQKKR----AEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777764 4567889999999999999999998876644
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=81.23 E-value=19 Score=28.78 Aligned_cols=88 Identities=20% Similarity=0.236 Sum_probs=49.2
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHH-HHHHHHHHHHhHHHHHHHH--HHHHH---------
Q 041834 20 ITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELK-NLEARLEKGIGRVRSKKNE--MLLAE--------- 87 (189)
Q Consensus 20 ~~~~~~q~~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~-~LE~qLE~sL~~IRsrK~q--ll~~e--------- 87 (189)
..+....||...+..++.++..++...--|... -+||. .||..|+.+=+++|.-+.+ .+..+
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqes------SrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~ 80 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEG------SRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLE 80 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456688887777777777777766555542 13332 3444444444444433222 12222
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 88 ---------IEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 88 ---------I~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
|..|++....|...+..|+.+|.+.+
T Consensus 81 ~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 81 HQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666667777777777776544
No 6
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=80.55 E-value=8.4 Score=25.12 Aligned_cols=41 Identities=15% Similarity=0.347 Sum_probs=32.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 72 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQ 116 (189)
Q Consensus 72 sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~~~ 116 (189)
|..+-|.||.+. +..|+.+...|..+|..|+..|.......
T Consensus 13 AA~rcR~rKk~~----~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 13 AAAKCRNRRREL----TDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888654 56899999999999999999998765543
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=78.17 E-value=9.9 Score=24.49 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=32.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 72 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERA 115 (189)
Q Consensus 72 sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~~ 115 (189)
|-.+.|.||.+ .+..|..+...|..+|..|..+|......
T Consensus 12 AA~k~R~rKk~----~~~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 12 AASRSRQKRKV----WVQSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888865 45789999999999999999999877654
No 8
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=78.15 E-value=9.2 Score=24.44 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=29.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 72 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 72 sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
|-.+-|.||.. .++.|..++..|..+|..|+.++....
T Consensus 12 sA~rSR~RKk~----~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 12 AARESRRKKKE----YVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666653 457888999999999999999987654
No 9
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=77.50 E-value=8.5 Score=23.58 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 84 LLAEIEFMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 84 l~~eI~~LqkKe~~L~eeN~~Lr~ki 109 (189)
|.....+|..|...|+.||..||+.+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 34456677777888888888888765
No 10
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=76.87 E-value=12 Score=24.16 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=32.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 72 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERA 115 (189)
Q Consensus 72 sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~~ 115 (189)
|..+-|.||.+. +..|..+...|..+|..|..+|......
T Consensus 12 AA~k~R~rKk~~----~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 12 AASKSRKRKLER----IARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888554 5689999999999999999999887654
No 11
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=76.72 E-value=3.9 Score=28.17 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 82 EMLLAEIEFMEKREIQLQNDNMYLRA 107 (189)
Q Consensus 82 qll~~eI~~LqkKe~~L~eeN~~Lr~ 107 (189)
+.|.++|.+|..|...|+.||..||.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777754
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=74.22 E-value=19 Score=35.79 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 041834 28 YQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEM---LLAEIEFMEKREIQLQNDNMY 104 (189)
Q Consensus 28 ~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~ql---l~~eI~~LqkKe~~L~eeN~~ 104 (189)
+..|+.+|+++++.|+.......--. -.+++|+.=-..++..+.+....|..+ +..-.+.|+.|...|.++|..
T Consensus 958 ~~~e~~~L~~~l~~le~~~~e~~~~~---~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~ 1034 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMSEEEAKNAT---NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTL 1034 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777776666665433322100 001111111122233333333333222 122225777888999999999
Q ss_pred HHHHHHHHH
Q 041834 105 LRARISENE 113 (189)
Q Consensus 105 Lr~ki~e~~ 113 (189)
|+.++.+.+
T Consensus 1035 L~qq~~~l~ 1043 (1080)
T 2dfs_A 1035 LKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=72.87 E-value=7.8 Score=24.72 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 83 MLLAEIEFMEKREIQLQNDNMYLRARIS 110 (189)
Q Consensus 83 ll~~eI~~LqkKe~~L~eeN~~Lr~ki~ 110 (189)
.|..++.+|+.|...|.+++..|+.++.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455777888888888888888877764
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.45 E-value=57 Score=29.03 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 041834 27 FYQQEATKLRRQIREIQNLNR 47 (189)
Q Consensus 27 ~~~~E~~kLk~eie~Lq~~~R 47 (189)
.+..++.+|+.++...+....
T Consensus 460 ~~~~~i~~l~~~~~~~~~~l~ 480 (597)
T 3oja_B 460 ELRAEVQQLTNEQIQQEQLLQ 480 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355677777666655554443
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=69.89 E-value=33 Score=25.84 Aligned_cols=51 Identities=18% Similarity=0.164 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 64 NLEARLEKGIGRVRSKKNEMLL--AEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 64 ~LE~qLE~sL~~IRsrK~qll~--~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
.|+.+++.--+.|=+-|.++.. .+++.+.++...|.+++..|..++...+.
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555543 33455566666666666666666665543
No 16
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=69.05 E-value=35 Score=25.79 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhhchhcc-----CCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 041834 31 EATKLRRQIREIQNLNRHILGE-----ALSTLNFKELKNLEARLEKGIGRVRSKKNEML 84 (189)
Q Consensus 31 E~~kLk~eie~Lq~~~R~l~GE-----dL~~LslkEL~~LE~qLE~sL~~IRsrK~qll 84 (189)
-...|+++.+.....-+.++.| +|++||..+|+.+=+.|-..|..|=+-|..+-
T Consensus 27 A~e~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 27 AKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3445666666666666666664 78888999999999999999988877775543
No 17
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=66.66 E-value=27 Score=25.20 Aligned_cols=14 Identities=36% Similarity=0.340 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 041834 96 IQLQNDNMYLRARI 109 (189)
Q Consensus 96 ~~L~eeN~~Lr~ki 109 (189)
..|+.++..||.++
T Consensus 78 e~Lq~E~erLr~~v 91 (100)
T 1go4_E 78 SQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555555544
No 18
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=66.15 E-value=27 Score=23.45 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=30.5
Q ss_pred HHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 71 KGIGRVRSKKNEML---LAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 71 ~sL~~IRsrK~qll---~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
.|=...|.||.+.| ..++..|......+..+|..|+..|.....
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788887655 346666666666778888888888876543
No 19
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=65.94 E-value=35 Score=24.66 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 85 LAEIEFMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 85 ~~eI~~LqkKe~~L~eeN~~Lr~ki 109 (189)
-.+|..|..+...|..+|..|+..-
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888887654
No 20
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=65.45 E-value=30 Score=24.20 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=30.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 72 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQ 116 (189)
Q Consensus 72 sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~~~ 116 (189)
|..+-|.++.+. ...++.+...|..+|..|+.+|.......
T Consensus 26 AarrSR~krk~r----~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 26 AVRKSRDKAKMR----NLETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555333 35678889999999999999999877654
No 21
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.82 E-value=35 Score=23.20 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 54 LSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 54 L~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
+++++. +..|+..|......||.+.. .|..+.+......++...|+.++..
T Consensus 15 ~~~mgt--i~eLq~~L~~K~eELr~kd~-----~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 15 IEGRGS--LRDLQYALQEKIEELRQRDA-----LIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp ----CH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCc--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 78888888888888887653 3667777777777777777777754
No 22
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=59.09 E-value=71 Score=25.90 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHH
Q 041834 58 NFKELKNLEARLEKGIGRVRSKKNEML--LAEIEFMEKREIQL 98 (189)
Q Consensus 58 slkEL~~LE~qLE~sL~~IRsrK~qll--~~eI~~LqkKe~~L 98 (189)
+.+|+..|.+.++..-.+|...-.+++ +++|+.++.....+
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~ 130 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDL 130 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999988877776666654 56665555444433
No 23
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=58.11 E-value=42 Score=22.95 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=30.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 72 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQ 116 (189)
Q Consensus 72 sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~~~ 116 (189)
|..+-|.++-+. ...++.+...|..+|..|+.+|.......
T Consensus 26 AakrSR~krk~r----~~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 26 AVRKSRDKAKMR----NLETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556555433 34778889999999999999999876654
No 24
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=55.52 E-value=21 Score=20.87 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 78 SKKNEMLLAEIEFMEKREIQLQNDN 102 (189)
Q Consensus 78 srK~qll~~eI~~LqkKe~~L~eeN 102 (189)
.||+.-....|++|+++...|.++-
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHH
Confidence 4677777778888877766665543
No 25
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=53.49 E-value=82 Score=24.94 Aligned_cols=68 Identities=22% Similarity=0.375 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHhhchhcc-----CCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHH
Q 041834 31 EATKLRRQIREIQNLNRHILGE-----ALSTLNFKELKNLEARLEKGIGRVRSKKNEMLL------AEIEFMEKREIQL 98 (189)
Q Consensus 31 E~~kLk~eie~Lq~~~R~l~GE-----dL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~------~eI~~LqkKe~~L 98 (189)
-...|.++-+.....-+.++.| +|++||..+|+.+=+.|-..|..|=+-|..+-. -+|.+|+.++..|
T Consensus 27 A~e~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DL 105 (180)
T 1j1e_C 27 AKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHH
Confidence 3444666666666666666664 777889999999999999999988887766543 2455555555544
No 26
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.24 E-value=27 Score=25.22 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 86 AEIEFMEKREIQLQNDNMYLRARISENERAQ 116 (189)
Q Consensus 86 ~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~~~ 116 (189)
+++..++++...|..+|..|+.+++..+...
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999877644
No 27
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=49.32 E-value=37 Score=24.61 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 041834 53 ALSTLNFKELKNLEARLEKGIGRVRSKKNEML 84 (189)
Q Consensus 53 dL~~LslkEL~~LE~qLE~sL~~IRsrK~qll 84 (189)
+|++||..+|+.+=+.|-..|..+=+-|..+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 78889999999999999988888777775543
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=49.02 E-value=81 Score=23.60 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 28 YQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRA 107 (189)
Q Consensus 28 ~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ 107 (189)
.-.|+.+++.+++.|+..+..+ -+|+..|=+.|...-.++. -+..+++.++++...|+.++..|..
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~~k~e-----~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQIKAE-----SSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665444333 3344444444433322222 2334556666666666666666655
Q ss_pred HHHH
Q 041834 108 RISE 111 (189)
Q Consensus 108 ki~e 111 (189)
++.+
T Consensus 132 ~~~~ 135 (138)
T 3hnw_A 132 ELND 135 (138)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 29
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.43 E-value=26 Score=22.19 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=20.9
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHhh
Q 041834 20 ITEANTQFYQQEATKLRRQIREIQNLNR 47 (189)
Q Consensus 20 ~~~~~~q~~~~E~~kLk~eie~Lq~~~R 47 (189)
+...+.+.++.|...|+.+++.|...+-
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888888876654
No 30
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=47.05 E-value=70 Score=22.30 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=23.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 69 LEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 69 LE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
++.++..|-.++.. +...|..|.++...+..+=..|+.++.+
T Consensus 68 ~~ea~~~L~~~~e~-ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 68 KDKAVAELKEKIET-LEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555533 3556666666666666665555555543
No 31
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=46.92 E-value=34 Score=24.83 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=27.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 041834 53 ALSTLNFKELKNLEARLEKGIGRVRSKKNEML 84 (189)
Q Consensus 53 dL~~LslkEL~~LE~qLE~sL~~IRsrK~qll 84 (189)
+|++||..+|+.+=+.|-..|..+=+-|..+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 79999999999999999999988887776554
No 32
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=44.36 E-value=93 Score=22.95 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 56 TLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 56 ~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
++|++|...+=...+.+-..+.. ..+++.+++..+.++...|...-..|..++...+.
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~-~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEA-RAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999998876655443322322 24577788888888888888888888888876543
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.21 E-value=1.7e+02 Score=25.89 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 81 NEMLLAEIEFMEKREIQLQNDNMYLRARIS 110 (189)
Q Consensus 81 ~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~ 110 (189)
.+.+.++++..++....++++...|++++.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~ 554 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLD 554 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHHHh
Confidence 333344443333333434444444444433
No 34
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.68 E-value=66 Score=20.75 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 80 KNEMLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 80 K~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
+.+-|..+...|+.+...|..++.+|+.-|.+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666777888888888888888776654
No 35
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=40.95 E-value=34 Score=19.04 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041834 95 EIQLQNDNMYLRARISENE 113 (189)
Q Consensus 95 e~~L~eeN~~Lr~ki~e~~ 113 (189)
...|+.+|+.|+.|++|.-
T Consensus 8 lasleaenkqlkakveell 26 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4578889999999998853
No 36
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=39.04 E-value=57 Score=22.05 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 87 EIEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 87 eI~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
-|..|+.....|.++|..|+..+.+..
T Consensus 51 YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 51 YIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455677888899999999999887653
No 37
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=37.72 E-value=1.1e+02 Score=21.97 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 26 QFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 105 (189)
Q Consensus 26 q~~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~L 105 (189)
+.+-+||..|-+.++.++...+.+.-. .... ..|.+-+..+|+.|+.....|..+|...
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rlr~~-------------~~~~--------~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRLRLE-------------SKRL--------DARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hccc--------hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677777777777776555443211 1111 3444556777888888888888888877
Q ss_pred HHH
Q 041834 106 RAR 108 (189)
Q Consensus 106 r~k 108 (189)
++.
T Consensus 92 ~~~ 94 (104)
T 3s9g_A 92 RQQ 94 (104)
T ss_dssp HHC
T ss_pred ccc
Confidence 653
No 38
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=37.45 E-value=1.4e+02 Score=23.02 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 58 NFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 105 (189)
Q Consensus 58 slkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~L 105 (189)
|..|.+.||..-..-+.+|+.||.+|= ++...+.=.+.|.+.|+.+
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~Lq--eL~~Q~vafknLv~RN~~~ 48 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQ--ELILQQIAFKNLVQRNRHA 48 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 678999999988888899988775542 2222222234455555444
No 39
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=37.27 E-value=57 Score=25.58 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhchhccCCCC--CCHHHHHHHHHHHHHHHhHHHHHH
Q 041834 32 ATKLRRQIREIQNLNRHILGEALST--LNFKELKNLEARLEKGIGRVRSKK 80 (189)
Q Consensus 32 ~~kLk~eie~Lq~~~R~l~GEdL~~--LslkEL~~LE~qLE~sL~~IRsrK 80 (189)
|.+.+.-|..|+...|.-.+.|+.. ..+++|+.+.+.++ .|..+|-+|
T Consensus 82 Y~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~-~L~~~Ri~K 131 (171)
T 3anw_B 82 YERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLR-DLKLIRFNK 131 (171)
T ss_dssp HHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3566788999999999998888776 33468877777665 567777777
No 40
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=36.92 E-value=1.6e+02 Score=23.64 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=27.3
Q ss_pred HHHHhhhhcCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhchhc
Q 041834 4 IDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILG 51 (189)
Q Consensus 4 LERY~k~~~~~~~~~~~~~~~~q~~~~E~~kLk~eie~Lq~~~R~l~G 51 (189)
|+||++-.... ......+.+..|+..++.++..++..+..+|.
T Consensus 76 i~~~~~~l~~v-----~~~kE~~aL~kEie~~~~~i~~lE~eile~~e 118 (256)
T 3na7_A 76 IASIQKKMSEI-----KSERELRSLNIEEDIAKERSNQANREIENLQN 118 (256)
T ss_dssp HHHHHHHHHHC-----SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777654211 12334456777888888888888877776654
No 41
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=35.77 E-value=29 Score=22.79 Aligned_cols=42 Identities=7% Similarity=0.116 Sum_probs=31.4
Q ss_pred CCCCCCHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041834 53 ALSTLNFKE----LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKR 94 (189)
Q Consensus 53 dL~~LslkE----L~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkK 94 (189)
+...++.++ +..|++++..+.....--+...+.++|..|+++
T Consensus 13 ~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 13 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp SSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 445555333 667888888888888888888888888888765
No 42
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=34.64 E-value=58 Score=27.13 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 80 KNEMLLAEIEFMEKREIQLQNDNMYL 105 (189)
Q Consensus 80 K~qll~~eI~~LqkKe~~L~eeN~~L 105 (189)
|++.|.+.+..++++...|.+++..|
T Consensus 69 rNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 69 RNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555544444444443
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=33.38 E-value=1.2e+02 Score=20.94 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 79 KKNEMLLAEIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 79 rK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
.|-+-..+.|.-||-....|.++|..|.....+.
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~ 46 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA 46 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788889889999999999999999888873
No 44
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=32.49 E-value=96 Score=19.60 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 81 NEMLLAEIEFMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 81 ~qll~~eI~~LqkKe~~L~eeN~~Lr~ki 109 (189)
...|..+...|+.+...|.+++..|+..+
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455566677777777777777776654
No 45
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.21 E-value=1.2e+02 Score=21.05 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 83 MLLAEIEFMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 83 ll~~eI~~LqkKe~~L~eeN~~Lr~ki 109 (189)
.|.++|+.++.....|.++|..|+.-+
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554433
No 46
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=31.39 E-value=1e+02 Score=24.56 Aligned_cols=38 Identities=16% Similarity=0.422 Sum_probs=30.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 73 IGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 73 L~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
-+.|..+|.+|+ +.|++|...|.++-..|...+..+..
T Consensus 10 ~~~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~~~N~~ 47 (190)
T 3thf_A 10 TNLIKQKMDELI----KHLNQKIVSLKREQQTISEECSANDR 47 (190)
T ss_dssp CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889998886 58899999999988888888877654
No 47
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=31.21 E-value=92 Score=19.74 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 90 FMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 90 ~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
.|-+.+..|..||..||+.+..+.
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS 30 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNS 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhH
Confidence 445566677788999999887764
No 48
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=31.20 E-value=66 Score=17.32 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 041834 28 YQQEATKLRRQIREIQNLNR 47 (189)
Q Consensus 28 ~~~E~~kLk~eie~Lq~~~R 47 (189)
++.|+..|..++..|.+.+|
T Consensus 6 lykeledlqerlrklrkklr 25 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555555444
No 49
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=30.70 E-value=86 Score=18.51 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 84 LLAEIEFMEKREIQLQNDNMYLRARIS 110 (189)
Q Consensus 84 l~~eI~~LqkKe~~L~eeN~~Lr~ki~ 110 (189)
+.+.+..--.|++.|+.+|+.|..+|.
T Consensus 11 LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554455678889999999988874
No 50
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=29.99 E-value=1.7e+02 Score=21.61 Aligned_cols=57 Identities=7% Similarity=0.096 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 56 TLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 56 ~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
++|++|...+=...+.+-..+.. ..+++.+++..+.++...|+..-..|..++...+
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILH-RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999988876544333222222 2357778888888888888888888877776543
No 51
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=29.42 E-value=1.5e+02 Score=20.80 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 041834 87 EIEFMEKREIQLQ 99 (189)
Q Consensus 87 eI~~LqkKe~~L~ 99 (189)
++..|.||.+.|.
T Consensus 87 ev~~L~RriqllE 99 (101)
T 3u1c_A 87 EVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 4444555544443
No 52
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.39 E-value=2.2e+02 Score=22.52 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 79 KKNEMLLAEIEFMEKREIQLQNDNMYLRARISENE 113 (189)
Q Consensus 79 rK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~ 113 (189)
|+.......++++..|.....|.|.+|...+.+.+
T Consensus 123 r~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe 157 (189)
T 2v71_A 123 RAKRATIMSLEDFEQRLNQAIERNAFLESELDEKE 157 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677777777777788888877777643
No 53
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=27.08 E-value=1.4e+02 Score=19.89 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 56 TLNFKELKNLEARLEKGIG-RVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIS 110 (189)
Q Consensus 56 ~LslkEL~~LE~qLE~sL~-~IRsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~ 110 (189)
+||++|+..+=.....+-. .+ ..-..++..++..+.++...|...-..|..++.
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~ 70 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLND 70 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899988887443221110 11 122346666777777776666666666665554
No 54
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.93 E-value=1.2e+02 Score=20.19 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041834 90 FMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 90 ~LqkKe~~L~eeN~~Lr~ki 109 (189)
.|+.....|..+|..|+.++
T Consensus 58 ~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 58 THQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455554444
No 55
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.76 E-value=1.7e+02 Score=20.76 Aligned_cols=19 Identities=5% Similarity=0.132 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 041834 30 QEATKLRRQIREIQNLNRH 48 (189)
Q Consensus 30 ~E~~kLk~eie~Lq~~~R~ 48 (189)
+++.++|.++..|+...+.
T Consensus 5 ~~~e~lre~l~~le~~~~~ 23 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSD 23 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455666666666655544
No 56
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.66 E-value=82 Score=18.26 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 88 IEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 88 I~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
+..|..|+..|..+|..|...+.-.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3455666777777777777766543
No 57
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=26.23 E-value=2.3e+02 Score=22.05 Aligned_cols=35 Identities=9% Similarity=0.210 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 80 KNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 114 (189)
Q Consensus 80 K~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~ 114 (189)
|..-|..+++.++.++..+..+|+.|..+|...++
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677888888899999999999999999887665
No 58
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.08 E-value=1.7e+02 Score=25.78 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhcc
Q 041834 28 YQQEATKLRRQIREIQNLNRHILGE 52 (189)
Q Consensus 28 ~~~E~~kLk~eie~Lq~~~R~l~GE 52 (189)
.-.++..+...+..|-+.+.....+
T Consensus 46 ~l~elsn~ts~v~~Lvk~iq~~~~~ 70 (409)
T 1m1j_C 46 LLQQATNSTGSIEYLIQHIKTIYPS 70 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445555566665555555554444
No 59
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.02 E-value=4.7e+02 Score=29.41 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 60 KELKNLEARLEKGIGRVRSKKNEM--LLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 60 kEL~~LE~qLE~sL~~IRsrK~ql--l~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
++|..+|.+|+.+-.+....+.++ +.+.|..|+.+......+-..|..+++.
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999988888777664 5677888887766666666666665543
No 60
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=26.01 E-value=72 Score=18.42 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 89 EFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 89 ~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
..|..|+..|..+|..|...+.-.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345667777888888887777554
No 61
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.94 E-value=1.2e+02 Score=18.47 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 57 LNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQND 101 (189)
Q Consensus 57 LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe~~L~ee 101 (189)
+|-+||.+==..++.-+.+++. +|..+|+|...|.+.
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~--------kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQ--------QISKLKKKQQQLEEE 38 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHh
Confidence 3444555444445555555543 577788887777664
No 62
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=25.73 E-value=1.2e+02 Score=20.90 Aligned_cols=32 Identities=28% Similarity=0.249 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 81 NEMLLAEIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 81 ~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
++.|..+|+.++.....|.++|..|..-..+.
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777778888888886655443
No 63
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=25.19 E-value=77 Score=25.22 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 85 LAEIEFMEKREIQLQNDNMYLRAR 108 (189)
Q Consensus 85 ~~eI~~LqkKe~~L~eeN~~Lr~k 108 (189)
++.|.+|+.+...|++||..|...
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999998654
No 64
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=24.98 E-value=1.2e+02 Score=18.37 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 88 IEFMEKREIQLQNDNMYLRARISENERAQQ 117 (189)
Q Consensus 88 I~~LqkKe~~L~eeN~~Lr~ki~e~~~~~~ 117 (189)
+.+|..|.+.|+..|..|..+|.-.++..+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 567888899999999999999887666543
No 65
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.55 E-value=1.2e+02 Score=18.27 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhH
Q 041834 55 STLNFKELKNLEARLEKGIGR 75 (189)
Q Consensus 55 ~~LslkEL~~LE~qLE~sL~~ 75 (189)
+++|.+||--||..|..--++
T Consensus 15 egfspeelaaleselqalekk 35 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKK 35 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 469999999999877654333
No 66
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=24.55 E-value=1.1e+02 Score=17.91 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 81 NEMLLAEIEFMEKREIQLQNDNMYLR 106 (189)
Q Consensus 81 ~qll~~eI~~LqkKe~~L~eeN~~Lr 106 (189)
++.+..+|+.-......|.++|..|.
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44555566555556666777776663
No 67
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.12 E-value=1.6e+02 Score=20.37 Aligned_cols=31 Identities=29% Similarity=0.280 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 81 NEMLLAEIEFMEKREIQLQNDNMYLRARISE 111 (189)
Q Consensus 81 ~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e 111 (189)
++.|.++|+.++.....|.++|..|+.-...
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777788888888665443
No 68
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=23.13 E-value=1.5e+02 Score=18.94 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 84 LLAEIEFMEKREIQLQNDNMYLRARISENERA 115 (189)
Q Consensus 84 l~~eI~~LqkKe~~L~eeN~~Lr~ki~e~~~~ 115 (189)
+.+-+-.|+.....|..+|+.|.+-+++-.++
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkA 39 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEEEQRA 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888888999998888775544
No 69
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.55 E-value=2.6e+02 Score=21.40 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041834 89 EFMEKREIQLQNDNMYLRAR 108 (189)
Q Consensus 89 ~~LqkKe~~L~eeN~~Lr~k 108 (189)
..+..|...|++||..|-.+
T Consensus 113 n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 113 NVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456777788888655544
No 70
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.12 E-value=1.5e+02 Score=23.42 Aligned_cols=30 Identities=20% Similarity=0.156 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 83 MLLAEIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 83 ll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
.+++.+..|+.+...|+++|..|+......
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788899999999999999998876543
No 71
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.01 E-value=1.9e+02 Score=19.67 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041834 96 IQLQNDNMYLRARISEN 112 (189)
Q Consensus 96 ~~L~eeN~~Lr~ki~e~ 112 (189)
..|..+|..|+.+|.+.
T Consensus 69 ~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 69 DLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34666777777776553
No 72
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.54 E-value=2.3e+02 Score=20.44 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 041834 61 ELKNLEARLEKGIGRVRSKKNE 82 (189)
Q Consensus 61 EL~~LE~qLE~sL~~IRsrK~q 82 (189)
|+...|.||..|-.+++.-..+
T Consensus 43 Ei~~~E~QL~iArQKLkdAe~~ 64 (107)
T 2k48_A 43 NITAHEQQLVTARQKLKDAEKA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777776666655443
No 73
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.05 E-value=2e+02 Score=19.32 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 87 EIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 87 eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
-|..|+.++..+..+...|+.+..+.
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666655544
No 74
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.65 E-value=1.9e+02 Score=23.31 Aligned_cols=32 Identities=28% Similarity=0.257 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 81 NEMLLAEIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 81 ~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
++.|..+|+.++.....|.++|..|+.-+...
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777888888777665544
No 75
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=20.46 E-value=78 Score=19.92 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHH
Q 041834 30 QEATKLRRQIREIQNLNRHILGEALSTLNFKELKNL 65 (189)
Q Consensus 30 ~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~L 65 (189)
.|+.+|.++|+.||+..-.-+ --|..-|..+|+.+
T Consensus 6 EEILRLErEIE~Lqrqke~~~-~~L~e~s~~eL~~~ 40 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRMKEQQE-LSLTEASLQKLQER 40 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhHhHHHHHHHH
Confidence 477888888888876543211 12334455555443
No 76
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=20.41 E-value=2.2e+02 Score=19.62 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 77 RSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 77 RsrK~qll~~eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
|-+|++=+..+|..|+-|+..+.++-..-.+|+...
T Consensus 17 ~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsT 52 (81)
T 3qh9_A 17 KQRKAEELLQELRHLKIKVEELENERNQYEWKLKAT 52 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 447778888899999999888888877777776543
Done!