Query 041834
Match_columns 189
No_of_seqs 198 out of 1150
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 19:11:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041834.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041834hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r8ea1 a.6.1.3 (A:3-120) Tran 42.1 39 0.0029 22.1 6.6 10 56-65 61-70 (118)
2 d1e52a_ a.2.9.1 (A:) C-termina 35.9 17 0.0012 21.9 3.3 40 56-95 9-52 (56)
3 d1uklc_ a.38.1.1 (C:) SREBP-2 29.7 42 0.003 19.8 4.5 23 87-109 34-56 (61)
4 d1am9a_ a.38.1.1 (A:) SREBP-1a 28.6 55 0.004 20.2 5.2 33 80-112 41-76 (80)
5 d3d19a2 a.29.13.1 (A:145-274) 24.1 1E+02 0.0073 20.9 9.1 79 27-105 35-120 (130)
6 d1siga_ a.177.1.1 (A:) Sigma70 22.6 44 0.0032 25.5 4.5 59 28-88 214-272 (334)
7 d1nlwa_ a.38.1.1 (A:) Mad prot 20.6 69 0.005 19.5 4.4 17 93-109 61-77 (79)
8 d2azea1 e.63.1.1 (A:199-346) T 20.6 1.4E+02 0.0098 21.1 7.8 24 60-83 2-25 (148)
9 d1nkpb_ a.38.1.1 (B:) Max prot 19.8 94 0.0069 19.0 6.3 11 34-44 16-26 (83)
10 d1bjta_ e.11.1.1 (A:) DNA topo 19.6 28 0.002 31.0 2.9 39 31-69 710-748 (760)
No 1
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=42.07 E-value=39 Score=22.06 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=6.6
Q ss_pred CCCHHHHHHH
Q 041834 56 TLNFKELKNL 65 (189)
Q Consensus 56 ~LslkEL~~L 65 (189)
++|++|.+.+
T Consensus 61 g~sl~eIk~~ 70 (118)
T d1r8ea1 61 GTPLEEMKKA 70 (118)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 3777777654
No 2
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=35.88 E-value=17 Score=21.85 Aligned_cols=40 Identities=8% Similarity=0.120 Sum_probs=31.5
Q ss_pred CCCHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 041834 56 TLNFKE----LKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKRE 95 (189)
Q Consensus 56 ~LslkE----L~~LE~qLE~sL~~IRsrK~qll~~eI~~LqkKe 95 (189)
+||.++ +..||+++..+.....--|.-.+.++|..|++..
T Consensus 9 ~ls~~el~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l 52 (56)
T d1e52a_ 9 DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 52 (56)
T ss_dssp CSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 355444 7788888888888888888888889998887753
No 3
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.74 E-value=42 Score=19.81 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041834 87 EIEFMEKREIQLQNDNMYLRARI 109 (189)
Q Consensus 87 eI~~LqkKe~~L~eeN~~Lr~ki 109 (189)
-|..|++++..|.+++..|+...
T Consensus 34 YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 34 YIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888888888887654
No 4
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.60 E-value=55 Score=20.16 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=22.4
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041834 80 KNEMLLA---EIEFMEKREIQLQNDNMYLRARISEN 112 (189)
Q Consensus 80 K~qll~~---eI~~LqkKe~~L~eeN~~Lr~ki~e~ 112 (189)
|..+|.. -|..|+++...|.++|..|+..+...
T Consensus 41 K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~~~~ 76 (80)
T d1am9a_ 41 KSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555543 45566677778888888888777664
No 5
>d3d19a2 a.29.13.1 (A:145-274) Uncharacterized protein BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Probab=24.06 E-value=1e+02 Score=20.90 Aligned_cols=79 Identities=8% Similarity=0.033 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HH------HHHHHHH
Q 041834 27 FYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEF-ME------KREIQLQ 99 (189)
Q Consensus 27 ~~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI~~-Lq------kKe~~L~ 99 (189)
.+-.++....++.+.|-..-+.+.|--..+.+...+..+-++...++..+|.=|.+++...++. ++ ==.+.+.
T Consensus 35 ~li~~A~~f~~~Fe~Ll~~a~~l~~~~~~~~~~~~l~~ln~~~~~~~~~~~~FK~~~~~~~l~cki~s~~~Pll~dH~~R 114 (130)
T d3d19a2 35 KLVDTARNFSNDFDELMYQAIDLESMKPQSQTAPLLDQFLDQNRVSVASLRDFKKTARDLIEQCKIKSIIHPLLADHVFR 114 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCBCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCchHHHHHHH
Confidence 3556777778888888888888888788889999999999999999999999998877655431 00 0134566
Q ss_pred HHHHHH
Q 041834 100 NDNMYL 105 (189)
Q Consensus 100 eeN~~L 105 (189)
|++-+|
T Consensus 115 Ea~~Yl 120 (130)
T d3d19a2 115 EADRFL 120 (130)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666666
No 6
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Probab=22.64 E-value=44 Score=25.51 Aligned_cols=59 Identities=17% Similarity=0.348 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 041834 28 YQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEI 88 (189)
Q Consensus 28 ~~~E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qLE~sL~~IRsrK~qll~~eI 88 (189)
|...+.+.+..+...++.++.+. .-.+|++.++..+-..+..+-...+.-|.+++..-+
T Consensus 214 ~~~~l~~~~~~I~~~q~kl~~ie--~~~gl~~~elk~i~~~i~~ge~~~~~ak~~~~~~~~ 272 (334)
T d1siga_ 214 WSEKLHDVSEEVHRALQKLQQIE--EETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANL 272 (334)
T ss_dssp HHHHGGGTHHHHHHHHHHHHHHH--HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHhhccchHHHHHHhHH
Confidence 45555566677777777776653 345699999999999999999999999988765433
No 7
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.64 E-value=69 Score=19.49 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041834 93 KREIQLQNDNMYLRARI 109 (189)
Q Consensus 93 kKe~~L~eeN~~Lr~ki 109 (189)
.....|..++..|+.++
T Consensus 61 ~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 61 HQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33334444455555544
No 8
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.63 E-value=1.4e+02 Score=21.10 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 041834 60 KELKNLEARLEKGIGRVRSKKNEM 83 (189)
Q Consensus 60 kEL~~LE~qLE~sL~~IRsrK~ql 83 (189)
.|.+.||......+.+|+.||.+|
T Consensus 2 Qe~~~Le~E~~~~~erI~~K~~~L 25 (148)
T d2azea1 2 QECQNLEVERQRRLERIKQKQSQL 25 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888988888899998888654
No 9
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.84 E-value=94 Score=18.98 Aligned_cols=11 Identities=0% Similarity=0.434 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 041834 34 KLRRQIREIQN 44 (189)
Q Consensus 34 kLk~eie~Lq~ 44 (189)
+|...++.|..
T Consensus 16 ~in~~f~~L~~ 26 (83)
T d1nkpb_ 16 HIKDSFHSLRD 26 (83)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 10
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.59 E-value=28 Score=30.99 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhchhccCCCCCCHHHHHHHHHHH
Q 041834 31 EATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARL 69 (189)
Q Consensus 31 E~~kLk~eie~Lq~~~R~l~GEdL~~LslkEL~~LE~qL 69 (189)
++.+|.++++.++..+..+..-....|..+||..|++.+
T Consensus 710 ei~kL~~E~~~l~~Ei~~L~~~t~~~lW~~DL~~l~~~y 748 (760)
T d1bjta_ 710 RYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGY 748 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 445555555555555444443333334444444444433
Done!