Query 041835
Match_columns 120
No_of_seqs 142 out of 1424
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 11:08:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0157 Cytochrome P450 CYP4/C 100.0 7.9E-33 1.7E-37 208.3 11.5 120 1-120 375-495 (497)
2 PLN02169 fatty acid (omega-1)- 100.0 2.8E-32 6.1E-37 205.4 12.3 118 3-120 380-499 (500)
3 KOG0158 Cytochrome P450 CYP3/C 100.0 4.1E-32 8.9E-37 202.7 11.6 118 1-120 377-498 (499)
4 PLN02290 cytokinin trans-hydro 100.0 8.7E-32 1.9E-36 203.0 12.0 117 1-120 398-514 (516)
5 PLN03195 fatty acid omega-hydr 100.0 6.3E-32 1.4E-36 203.8 10.9 118 3-120 397-515 (516)
6 PLN02500 cytochrome P450 90B1 100.0 1.7E-31 3.7E-36 200.4 10.9 117 1-120 367-489 (490)
7 PLN02426 cytochrome P450, fami 100.0 5.3E-31 1.1E-35 198.6 11.2 119 2-120 378-499 (502)
8 PLN00168 Cytochrome P450; Prov 100.0 8E-31 1.7E-35 198.1 12.2 119 1-120 391-516 (519)
9 PLN02774 brassinosteroid-6-oxi 100.0 5.3E-31 1.1E-35 196.7 11.0 113 1-119 350-462 (463)
10 PF00067 p450: Cytochrome P450 100.0 3.4E-31 7.3E-36 193.5 9.2 116 1-117 346-463 (463)
11 PLN02738 carotene beta-ring hy 100.0 3.3E-30 7.2E-35 198.6 12.9 119 1-120 473-594 (633)
12 PLN03141 3-epi-6-deoxocathaste 100.0 1.5E-30 3.2E-35 193.7 10.4 112 1-120 338-449 (452)
13 PLN00110 flavonoid 3',5'-hydro 100.0 2E-30 4.2E-35 195.5 11.1 119 1-120 373-496 (504)
14 PLN03234 cytochrome P450 83B1; 100.0 1.9E-30 4.1E-35 195.0 11.0 120 1-120 372-498 (499)
15 PTZ00404 cytochrome P450; Prov 100.0 3.7E-30 8E-35 192.7 12.1 113 1-120 367-482 (482)
16 KOG0156 Cytochrome P450 CYP2 s 100.0 2E-30 4.3E-35 194.5 10.5 116 1-119 370-486 (489)
17 KOG0159 Cytochrome P450 CYP11/ 100.0 2E-30 4.3E-35 192.1 9.4 117 2-120 401-517 (519)
18 PLN02966 cytochrome P450 83A1 100.0 3.2E-30 7E-35 194.1 10.8 97 1-97 375-471 (502)
19 PLN02394 trans-cinnamate 4-mon 100.0 5.2E-30 1.1E-34 192.8 11.7 118 2-120 378-501 (503)
20 PLN02655 ent-kaurene oxidase 100.0 5.7E-30 1.2E-34 191.3 11.8 118 1-120 345-463 (466)
21 PLN02987 Cytochrome P450, fami 100.0 6.5E-30 1.4E-34 191.5 11.9 116 1-120 353-468 (472)
22 PLN02183 ferulate 5-hydroxylas 100.0 6.1E-30 1.3E-34 193.2 10.9 119 1-120 387-511 (516)
23 PLN02302 ent-kaurenoic acid ox 100.0 1E-29 2.2E-34 190.3 11.2 114 1-120 374-487 (490)
24 PLN03018 homomethionine N-hydr 100.0 1.9E-29 4.2E-34 191.4 12.8 118 1-120 398-523 (534)
25 PLN02936 epsilon-ring hydroxyl 100.0 1.5E-29 3.3E-34 190.0 11.7 118 2-120 362-481 (489)
26 PLN02971 tryptophan N-hydroxyl 100.0 1.3E-29 2.9E-34 192.5 11.3 118 1-120 411-533 (543)
27 PLN02687 flavonoid 3'-monooxyg 100.0 1.9E-29 4E-34 190.6 11.4 119 1-120 381-508 (517)
28 PLN02196 abscisic acid 8'-hydr 100.0 2.3E-29 5.1E-34 187.9 9.8 112 1-119 350-461 (463)
29 PLN03112 cytochrome P450 famil 100.0 1.1E-28 2.4E-33 186.0 11.4 119 1-120 380-507 (514)
30 KOG0684 Cytochrome P450 [Secon 99.9 1E-26 2.2E-31 169.9 8.8 118 2-120 358-484 (486)
31 COG2124 CypX Cytochrome P450 [ 99.9 1.5E-26 3.3E-31 170.8 8.9 107 1-119 303-409 (411)
32 PLN02648 allene oxide synthase 99.9 3.2E-23 7E-28 155.7 10.1 94 1-98 357-464 (480)
33 PF12508 DUF3714: Protein of u 81.7 1.6 3.5E-05 29.8 2.7 19 2-20 76-94 (200)
34 PF08492 SRP72: SRP72 RNA-bind 76.6 0.97 2.1E-05 24.7 0.3 8 40-47 44-51 (59)
35 PF14550 Peptidase_U35_2: Puta 72.6 2.5 5.5E-05 26.5 1.5 28 2-32 74-101 (122)
36 PF09201 SRX: SRX; InterPro: 65.5 5.8 0.00013 25.5 2.0 23 67-89 19-41 (148)
37 PF11138 DUF2911: Protein of u 63.2 7.6 0.00017 25.2 2.3 39 2-42 53-98 (145)
38 TIGR03779 Bac_Flav_CT_M Bacter 59.8 8.9 0.00019 29.1 2.5 19 2-20 279-297 (410)
39 COG2101 SPT15 TATA-box binding 55.3 5.4 0.00012 26.7 0.6 36 37-72 35-70 (185)
40 cd04518 TBP_archaea archaeal T 50.7 7.6 0.00016 25.9 0.8 35 37-71 29-63 (174)
41 PF12444 Sox_N: Sox developmen 50.6 12 0.00026 21.9 1.5 21 76-96 60-80 (84)
42 cd00652 TBP_TLF TATA box bindi 49.1 27 0.00058 23.2 3.2 34 37-70 29-62 (174)
43 KOG3302 TATA-box binding prote 42.8 15 0.00032 25.0 1.3 34 37-70 50-83 (200)
44 PRK14759 potassium-transportin 41.0 11 0.00023 17.5 0.2 6 39-44 24-29 (29)
45 PRK00394 transcription factor; 40.9 14 0.0003 24.8 0.9 34 37-70 28-61 (179)
46 PLN00062 TATA-box-binding prot 38.8 14 0.0003 24.8 0.6 35 37-71 29-63 (179)
47 PF11227 DUF3025: Protein of u 37.8 17 0.00036 25.2 0.9 24 19-43 187-211 (212)
48 PF00352 TBP: Transcription fa 33.7 15 0.00032 21.2 0.1 35 37-71 31-65 (86)
49 cd04516 TBP_eukaryotes eukaryo 32.7 20 0.00043 23.9 0.6 34 37-70 29-62 (174)
50 KOG3506 40S ribosomal protein 32.5 20 0.00043 19.2 0.5 10 60-69 13-22 (56)
51 PHA03162 hypothetical protein; 30.4 30 0.00066 22.0 1.1 24 62-85 2-25 (135)
52 KOG1939 Oxoprolinase [Amino ac 29.2 19 0.0004 30.2 0.0 57 40-96 458-518 (1247)
53 PF02663 FmdE: FmdE, Molybdenu 28.5 77 0.0017 19.7 2.8 22 66-87 5-26 (131)
54 PRK06789 flagellar motor switc 27.4 56 0.0012 18.6 1.8 18 4-21 45-62 (74)
55 TIGR02115 potass_kdpF K+-trans 27.1 17 0.00036 16.4 -0.3 7 39-45 19-25 (26)
56 PF01629 DUF22: Domain of unkn 26.9 66 0.0014 19.9 2.2 24 9-32 61-84 (112)
57 PF06718 DUF1203: Protein of u 23.9 1.9E+02 0.0042 18.0 4.2 83 11-93 10-100 (117)
58 cd04517 TLF TBP-like factors ( 20.7 1.4E+02 0.003 19.8 3.0 34 37-71 30-63 (174)
No 1
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00 E-value=7.9e-33 Score=208.34 Aligned_cols=120 Identities=37% Similarity=0.721 Sum_probs=108.8
Q ss_pred CccceEe-cCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHH
Q 041835 1 NFKEIKL-GEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAK 79 (120)
Q Consensus 1 a~~d~~l-~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~ 79 (120)
+++|++| +||.||||+.|++++|++|||+++|++||++|+|+||+++......+++.|+|||+|+|.|+|++||++||+
T Consensus 375 ~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA~lemK 454 (497)
T KOG0157|consen 375 ATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMK 454 (497)
T ss_pred cCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCCCcccchhHHHHHHHHH
Confidence 5789999 589999999999999999999999977999999999997654434567899999999999999999999999
Q ss_pred HHHHHHhhhceeEeCCCCccCCccceEEeeCCCceEEEEEC
Q 041835 80 LALAMILHKFTFQLSPTYVHAPTRGISVYPQHGANIILHKI 120 (120)
Q Consensus 80 ~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 120 (120)
++++.++++|++++..+....+....+++|.+|++|++++|
T Consensus 455 v~l~~ll~~f~~~~~~~~~~~~~~~~~l~~~~gl~v~~~~r 495 (497)
T KOG0157|consen 455 VVLAHLLRRFRIEPVGGDKPKPVPELTLRPKNGLKVKLRPR 495 (497)
T ss_pred HHHHHHHHheEEEecCCCCceeeeEEEEEecCCeEEEEEeC
Confidence 99999999999998877555667789999999999999987
No 2
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.98 E-value=2.8e-32 Score=205.39 Aligned_cols=118 Identities=23% Similarity=0.408 Sum_probs=101.6
Q ss_pred cceE-ecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCccccc-CCCcceeeecCCCCcChhHHHHHHHHHH
Q 041835 3 KEIK-LGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKAS-KNQISFFSFGWGPRICIGQNFALLEAKL 80 (120)
Q Consensus 3 ~d~~-l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~-~~~~~~~~Fg~G~~~C~G~~la~~~~~~ 80 (120)
+|.+ ++|+.|||||.|+++.|++||||++||++|++|+||||++++.... .....++|||+|+|+|+|+++|.+|+++
T Consensus 380 ~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~ 459 (500)
T PLN02169 380 KPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKI 459 (500)
T ss_pred CCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHH
Confidence 4444 5999999999999999999999999977999999999997543321 2367899999999999999999999999
Q ss_pred HHHHHhhhceeEeCCCCccCCccceEEeeCCCceEEEEEC
Q 041835 81 ALAMILHKFTFQLSPTYVHAPTRGISVYPQHGANIILHKI 120 (120)
Q Consensus 81 ~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 120 (120)
+++.|+++|++++.++.........+++|+++++|++++|
T Consensus 460 ~la~ll~~f~~~~~~~~~~~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 460 VALEIIKNYDFKVIEGHKIEAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred HHHHHHHHCEEEEcCCCCcccccceEEecCCCEEEEEEeC
Confidence 9999999999999765444444567889999999999986
No 3
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=4.1e-32 Score=202.75 Aligned_cols=118 Identities=38% Similarity=0.736 Sum_probs=105.5
Q ss_pred CccceEec-CEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHH
Q 041835 1 NFKEIKLG-EYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAK 79 (120)
Q Consensus 1 a~~d~~l~-g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~ 79 (120)
+++|++++ ++.|+||+.|+++.|++||||++| ++|++|+||||.+.+.+ ..++..|+|||.|+|.|+|.+||++|+|
T Consensus 377 C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~-p~Pe~F~PERF~~~~~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K 454 (499)
T KOG0158|consen 377 CTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYW-PEPEKFKPERFEEENNK-SRHPGAYLPFGVGPRNCIGMRFALMEAK 454 (499)
T ss_pred ecCceecCCCeEeCCCCEEEeecccccCCcccC-CCcccCCCccCCCCccc-ccCCccccCCCCCccccHHHHHHHHHHH
Confidence 46899999 999999999999999999999999 99999999999987754 3478899999999999999999999999
Q ss_pred HHHHHHhhhceeEeCCCCccCCcc---ceEEeeCCCceEEEEEC
Q 041835 80 LALAMILHKFTFQLSPTYVHAPTR---GISVYPQHGANIILHKI 120 (120)
Q Consensus 80 ~~l~~ll~~f~~~~~~~~~~~~~~---~~~~~p~~~~~v~~~~r 120 (120)
+.|+.||++|+++..+........ .+++.|++++++++++|
T Consensus 455 ~~L~~lL~~f~~~~~~~t~~~~~~~~~~~~l~pk~gi~Lkl~~r 498 (499)
T KOG0158|consen 455 LALAHLLRNFSFEVCPTTIIPLEGDPKGFTLSPKGGIWLKLEPR 498 (499)
T ss_pred HHHHHHHhhCEEecCCcccCcccCCccceeeecCCceEEEEEeC
Confidence 999999999999988743222333 78899999999999987
No 4
>PLN02290 cytokinin trans-hydroxylase
Probab=99.97 E-value=8.7e-32 Score=202.99 Aligned_cols=117 Identities=42% Similarity=0.831 Sum_probs=102.9
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAKL 80 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~ 80 (120)
+++|++++||.|||||.|+++.|++||||++|+++|++|+||||++... .....++|||.|+|.|+|+++|.+|+++
T Consensus 398 ~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~---~~~~~~~pFG~G~R~C~G~~lA~~el~l 474 (516)
T PLN02290 398 AFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF---APGRHFIPFAAGPRNCIGQAFAMMEAKI 474 (516)
T ss_pred ecCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCC---CCCCeEecCCCCCCCCccHHHHHHHHHH
Confidence 4689999999999999999999999999999966999999999995322 1345799999999999999999999999
Q ss_pred HHHHHhhhceeEeCCCCccCCccceEEeeCCCceEEEEEC
Q 041835 81 ALAMILHKFTFQLSPTYVHAPTRGISVYPQHGANIILHKI 120 (120)
Q Consensus 81 ~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 120 (120)
+++.|+++|++++.++.........++.|+++++|++++|
T Consensus 475 ~la~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 514 (516)
T PLN02290 475 ILAMLISKFSFTISDNYRHAPVVVLTIKPKYGVQVCLKPL 514 (516)
T ss_pred HHHHHHHhceEeeCCCcccCccceeeecCCCCCeEEEEeC
Confidence 9999999999998776433444568899999999999986
No 5
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.97 E-value=6.3e-32 Score=203.83 Aligned_cols=118 Identities=25% Similarity=0.399 Sum_probs=99.9
Q ss_pred cceEe-cCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHHHH
Q 041835 3 KEIKL-GEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAKLA 81 (120)
Q Consensus 3 ~d~~l-~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~~ 81 (120)
+|..+ +|+.|||||.|.++.|++||||++||++|++|+||||++++......+..++|||+|+|.|+|++||++|++++
T Consensus 397 ~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~ 476 (516)
T PLN03195 397 EDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMA 476 (516)
T ss_pred cCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHH
Confidence 45454 99999999999999999999999998899999999999643211234567999999999999999999999999
Q ss_pred HHHHhhhceeEeCCCCccCCccceEEeeCCCceEEEEEC
Q 041835 82 LAMILHKFTFQLSPTYVHAPTRGISVYPQHGANIILHKI 120 (120)
Q Consensus 82 l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 120 (120)
++.|+++|++++.++.........+..|.++++|++++|
T Consensus 477 la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 515 (516)
T PLN03195 477 LALLCRFFKFQLVPGHPVKYRMMTILSMANGLKVTVSRR 515 (516)
T ss_pred HHHHHHhceeEecCCCcceeeeeeEEecCCCEEEEEEeC
Confidence 999999999998765433333445678999999999986
No 6
>PLN02500 cytochrome P450 90B1
Probab=99.97 E-value=1.7e-31 Score=200.42 Aligned_cols=117 Identities=26% Similarity=0.449 Sum_probs=98.6
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCccccc------CCCcceeeecCCCCcChhHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKAS------KNQISFFSFGWGPRICIGQNFA 74 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~------~~~~~~~~Fg~G~~~C~G~~la 74 (120)
+++|++++||.|||||.|+++.|++||||++| ++|++|+||||++++.... ..+..++|||+|+|.|+|+++|
T Consensus 367 ~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A 445 (490)
T PLN02500 367 ALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLY-DQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELA 445 (490)
T ss_pred eCCCceeCCEEECCCCEEEechhhcccCcccC-CCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHH
Confidence 46899999999999999999999999999999 9999999999997543211 1356899999999999999999
Q ss_pred HHHHHHHHHHHhhhceeEeCCCCccCCccceEEeeCCCceEEEEEC
Q 041835 75 LLEAKLALAMILHKFTFQLSPTYVHAPTRGISVYPQHGANIILHKI 120 (120)
Q Consensus 75 ~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 120 (120)
.+|++++++.|+++|++++.++...... ....+.++++|+++++
T Consensus 446 ~~el~~~la~ll~~f~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 489 (490)
T PLN02500 446 KLEMAVFIHHLVLNFNWELAEADQAFAF--PFVDFPKGLPIRVRRI 489 (490)
T ss_pred HHHHHHHHHHHHhccEEEEcCCCcceec--ccccCCCCceEEEEeC
Confidence 9999999999999999998766433222 2335567999999874
No 7
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.97 E-value=5.3e-31 Score=198.64 Aligned_cols=119 Identities=18% Similarity=0.350 Sum_probs=100.8
Q ss_pred ccceEe-cCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHHH
Q 041835 2 FKEIKL-GEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAKL 80 (120)
Q Consensus 2 ~~d~~l-~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~ 80 (120)
.+|.++ +|+.||+||.|.++.|++|||+++||++|++|+||||+++..........++|||+|+|.|+|+++|.+|+++
T Consensus 378 ~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~ 457 (502)
T PLN02426 378 AEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEMALMEMKS 457 (502)
T ss_pred ccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCCCCCccHHHHHHHHHH
Confidence 456666 8999999999999999999999999999999999999974321112456789999999999999999999999
Q ss_pred HHHHHhhhceeEeCCCCc--cCCccceEEeeCCCceEEEEEC
Q 041835 81 ALAMILHKFTFQLSPTYV--HAPTRGISVYPQHGANIILHKI 120 (120)
Q Consensus 81 ~l~~ll~~f~~~~~~~~~--~~~~~~~~~~p~~~~~v~~~~r 120 (120)
+++.|+++|++++.++.. .......++.|+++++|++++|
T Consensus 458 ~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~r 499 (502)
T PLN02426 458 VAVAVVRRFDIEVVGRSNRAPRFAPGLTATVRGGLPVRVRER 499 (502)
T ss_pred HHHHHHHHceEEEecCCCCCCcccceeEEecCCCEEEEEEEc
Confidence 999999999999864422 2333467899999999999986
No 8
>PLN00168 Cytochrome P450; Provisional
Probab=99.97 E-value=8e-31 Score=198.10 Aligned_cols=119 Identities=24% Similarity=0.450 Sum_probs=100.9
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCccc-----ccCCCcceeeecCCCCcChhHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSK-----ASKNQISFFSFGWGPRICIGQNFAL 75 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~-----~~~~~~~~~~Fg~G~~~C~G~~la~ 75 (120)
+++|++++||.|||||.|.++.+++||||++| ++|++|+||||++.... .......++|||.|+|.|+|++||.
T Consensus 391 ~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~-~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~ 469 (519)
T PLN00168 391 AAEDMEVGGYLIPKGATVNFMVAEMGRDEREW-ERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAM 469 (519)
T ss_pred CCCCccCCCEEECCCCEEEEChHHHhcCcccc-CCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHH
Confidence 46899999999999999999999999999999 99999999999974321 1123467999999999999999999
Q ss_pred HHHHHHHHHHhhhceeEeCCCCccCC--ccceEEeeCCCceEEEEEC
Q 041835 76 LEAKLALAMILHKFTFQLSPTYVHAP--TRGISVYPQHGANIILHKI 120 (120)
Q Consensus 76 ~~~~~~l~~ll~~f~~~~~~~~~~~~--~~~~~~~p~~~~~v~~~~r 120 (120)
+|++++++.|+++|+|++.++..... ...++..|.++++|++++|
T Consensus 470 ~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 516 (519)
T PLN00168 470 LHLEYFVANMVREFEWKEVPGDEVDFAEKREFTTVMAKPLRARLVPR 516 (519)
T ss_pred HHHHHHHHHHHHHccceeCCCCcCChhhhceeEEeecCCcEEEEEec
Confidence 99999999999999999876543222 2346778888999999886
No 9
>PLN02774 brassinosteroid-6-oxidase
Probab=99.97 E-value=5.3e-31 Score=196.69 Aligned_cols=113 Identities=21% Similarity=0.351 Sum_probs=97.8
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAKL 80 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~ 80 (120)
+++|++++||.||||+.|+++.+++||||++| ++|++|+||||++.+.. ....++|||+|+|.|+|+++|.+|+++
T Consensus 350 ~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~-~dP~~F~PeRfl~~~~~---~~~~~lpFG~G~r~C~G~~~A~~e~~~ 425 (463)
T PLN02774 350 TTQDMELNGYVIPKGWRIYVYTREINYDPFLY-PDPMTFNPWRWLDKSLE---SHNYFFLFGGGTRLCPGKELGIVEIST 425 (463)
T ss_pred cCCCeeECCEEECCCCEEEEehHHhcCCcccC-CChhccCchhcCCCCcC---CCccccCcCCCCCcCCcHHHHHHHHHH
Confidence 46899999999999999999999999999999 99999999999965422 123699999999999999999999999
Q ss_pred HHHHHhhhceeEeCCCCccCCccceEEeeCCCceEEEEE
Q 041835 81 ALAMILHKFTFQLSPTYVHAPTRGISVYPQHGANIILHK 119 (120)
Q Consensus 81 ~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~ 119 (120)
+++.|+++|++++.++..... ..++.|+++++|++++
T Consensus 426 ~la~Ll~~f~~~~~~~~~~~~--~~~~~p~~g~~~~~~~ 462 (463)
T PLN02774 426 FLHYFVTRYRWEEVGGDKLMK--FPRVEAPNGLHIRVSP 462 (463)
T ss_pred HHHHHHHhceEEECCCCcccc--CCCCCCCCCceEEeee
Confidence 999999999999977643222 2355689999999875
No 10
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.97 E-value=3.4e-31 Score=193.54 Aligned_cols=116 Identities=33% Similarity=0.686 Sum_probs=96.0
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAKL 80 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~ 80 (120)
+.+|++++||.|||||.|+++.+++|+|+++| ++|++|+|+||++.+.........++|||.|+|.|+|+++|.+|+++
T Consensus 346 ~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~-~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~ 424 (463)
T PF00067_consen 346 ATEDVTLGGYFIPKGTIVIVSIYALHRDPEYF-PDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMKV 424 (463)
T ss_dssp ESSSEEETTEEEETTSEEEEEHHHHTTSTTTS-SSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccchHHHHHHHHHHH
Confidence 35799999999999999999999999999999 99999999999988763234678899999999999999999999999
Q ss_pred HHHHHhhhceeEeCCCCccCCccc--eEEeeCCCceEEE
Q 041835 81 ALAMILHKFTFQLSPTYVHAPTRG--ISVYPQHGANIIL 117 (120)
Q Consensus 81 ~l~~ll~~f~~~~~~~~~~~~~~~--~~~~p~~~~~v~~ 117 (120)
+++.|+++|++++.++........ .++.|..++.|.|
T Consensus 425 ~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (463)
T PF00067_consen 425 FLAKLLRRFDFELVPGSEPEPQEQQNGFLLPPKPLKVKF 463 (463)
T ss_dssp HHHHHHHHEEEEESTTSSGGEEECSCSSSEEESSSEEEE
T ss_pred HHHHHHHhCEEEECCCCCCCCccccCceEeeCCCcEEeC
Confidence 999999999999976544333222 4556666888875
No 11
>PLN02738 carotene beta-ring hydroxylase
Probab=99.97 E-value=3.3e-30 Score=198.57 Aligned_cols=119 Identities=32% Similarity=0.602 Sum_probs=101.7
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcc--cccCCCcceeeecCCCCcChhHHHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVS--KASKNQISFFSFGWGPRICIGQNFALLEA 78 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~--~~~~~~~~~~~Fg~G~~~C~G~~la~~~~ 78 (120)
+.+|++++||.||+||.|.++.|.+||||++| ++|++|+||||+.+.. ........++|||.|+|.|+|++||++|+
T Consensus 473 a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~if-pdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El 551 (633)
T PLN02738 473 SLENDMLGGYPIKRGEDIFISVWNLHRSPKHW-DDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFEN 551 (633)
T ss_pred eccCceECCEEECCCCEEEecHHHHhCCcccc-CCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHH
Confidence 35788999999999999999999999999999 9999999999985321 11124568999999999999999999999
Q ss_pred HHHHHHHhhhceeEeCCCCc-cCCccceEEeeCCCceEEEEEC
Q 041835 79 KLALAMILHKFTFQLSPTYV-HAPTRGISVYPQHGANIILHKI 120 (120)
Q Consensus 79 ~~~l~~ll~~f~~~~~~~~~-~~~~~~~~~~p~~~~~v~~~~r 120 (120)
+++++.|+++|++++.++.. .......+..|.+++++++++|
T Consensus 552 ~l~LA~Llr~F~~el~~~~~~~~~~~~~~~~p~~~l~v~l~~R 594 (633)
T PLN02738 552 VVATAMLVRRFDFQLAPGAPPVKMTTGATIHTTEGLKMTVTRR 594 (633)
T ss_pred HHHHHHHHHhCeeEeCCCCCCcccccceEEeeCCCcEEEEEEC
Confidence 99999999999999976642 2223457888999999999986
No 12
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.97 E-value=1.5e-30 Score=193.75 Aligned_cols=112 Identities=29% Similarity=0.465 Sum_probs=100.0
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAKL 80 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~ 80 (120)
+.+|++++||.||||+.|+++.+++|+|+++| ++|++|+||||++... ....++|||+|+|.|+|+++|.+|+++
T Consensus 338 ~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~-~dP~~F~PeRfl~~~~----~~~~~~pFG~G~R~C~G~~lA~~el~~ 412 (452)
T PLN03141 338 AMKDVEIKGYLIPKGWCVLAYFRSVHLDEENY-DNPYQFNPWRWQEKDM----NNSSFTPFGGGQRLCPGLDLARLEASI 412 (452)
T ss_pred ecCCeeECCEEECCCCEEEEehHhccCCchhc-CCccccCcccccCCCC----CCCCCCCCCCCCCCCChHHHHHHHHHH
Confidence 46899999999999999999999999999999 9999999999997532 356899999999999999999999999
Q ss_pred HHHHHhhhceeEeCCCCccCCccceEEeeCCCceEEEEEC
Q 041835 81 ALAMILHKFTFQLSPTYVHAPTRGISVYPQHGANIILHKI 120 (120)
Q Consensus 81 ~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 120 (120)
+++.|+++|++++.++.. ....++.|++++.|++++|
T Consensus 413 ~la~ll~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 449 (452)
T PLN03141 413 FLHHLVTRFRWVAEEDTI---VNFPTVRMKRKLPIWVTRI 449 (452)
T ss_pred HHHHHHhcCeeecCCCCe---eecccccCCCCceEEEEeC
Confidence 999999999999876532 2235889999999999987
No 13
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.97 E-value=2e-30 Score=195.54 Aligned_cols=119 Identities=22% Similarity=0.455 Sum_probs=101.3
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccC---CCcceeeecCCCCcChhHHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASK---NQISFFSFGWGPRICIGQNFALLE 77 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~---~~~~~~~Fg~G~~~C~G~~la~~~ 77 (120)
+.+|++++||.|||||.|+++.|++|+|+++| ++|++|+||||+++...... ....++|||.|+|.|+|+++|.+|
T Consensus 373 ~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e 451 (504)
T PLN00110 373 STQACEVNGYYIPKNTRLSVNIWAIGRDPDVW-ENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVL 451 (504)
T ss_pred cCCCeeeCCEEECCCCEEEEeHHHhcCChhhc-CCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHH
Confidence 35799999999999999999999999999999 99999999999965332111 235799999999999999999999
Q ss_pred HHHHHHHHhhhceeEeCCCCccCC--ccceEEeeCCCceEEEEEC
Q 041835 78 AKLALAMILHKFTFQLSPTYVHAP--TRGISVYPQHGANIILHKI 120 (120)
Q Consensus 78 ~~~~l~~ll~~f~~~~~~~~~~~~--~~~~~~~p~~~~~v~~~~r 120 (120)
++++++.|+++|++++.++..... ....++.|+.++.+++++|
T Consensus 452 ~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 496 (504)
T PLN00110 452 VEYILGTLVHSFDWKLPDGVELNMDEAFGLALQKAVPLSAMVTPR 496 (504)
T ss_pred HHHHHHHHHHhceeecCCCCccCcccccccccccCCCceEeeccC
Confidence 999999999999999877643322 3356778999999999886
No 14
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.97 E-value=1.9e-30 Score=195.01 Aligned_cols=120 Identities=23% Similarity=0.444 Sum_probs=100.8
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccc--cCCCcceeeecCCCCcChhHHHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKA--SKNQISFFSFGWGPRICIGQNFALLEA 78 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~--~~~~~~~~~Fg~G~~~C~G~~la~~~~ 78 (120)
+.+|++++||.|||||.|.++.|++||||++|+++|++|+||||+++.... ......++|||.|+|+|+|+++|.+|+
T Consensus 372 ~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~ 451 (499)
T PLN03234 372 TIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMV 451 (499)
T ss_pred cCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHH
Confidence 357999999999999999999999999999997799999999999754321 123568999999999999999999999
Q ss_pred HHHHHHHhhhceeEeCCCCc---cCC--ccceEEeeCCCceEEEEEC
Q 041835 79 KLALAMILHKFTFQLSPTYV---HAP--TRGISVYPQHGANIILHKI 120 (120)
Q Consensus 79 ~~~l~~ll~~f~~~~~~~~~---~~~--~~~~~~~p~~~~~v~~~~r 120 (120)
+++++.|+++|++++.++.. ... ..+++..|+..+.+.+++|
T Consensus 452 ~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 452 EIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred HHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence 99999999999999987532 111 3356667888888888775
No 15
>PTZ00404 cytochrome P450; Provisional
Probab=99.97 E-value=3.7e-30 Score=192.72 Aligned_cols=113 Identities=26% Similarity=0.488 Sum_probs=98.0
Q ss_pred CccceEe-cCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHH
Q 041835 1 NFKEIKL-GEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAK 79 (120)
Q Consensus 1 a~~d~~l-~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~ 79 (120)
+.+|+++ +||.|||||.|+++.+++||||++| ++|++|+||||++.. ....++|||+|+|.|+|+++|++|++
T Consensus 367 ~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~-~dP~~F~PeRwl~~~-----~~~~~~pFg~G~R~C~G~~~A~~e~~ 440 (482)
T PTZ00404 367 TSNDIIIGGGHFIPKDAQILINYYSLGRNEKYF-ENPEQFDPSRFLNPD-----SNDAFMPFSIGPRNCVGQQFAQDELY 440 (482)
T ss_pred ccCCEEecCCeEECCCCEEEeeHHHhhCCcccc-CCccccCccccCCCC-----CCCceeccCCCCCCCccHHHHHHHHH
Confidence 4689999 9999999999999999999999999 999999999998642 35689999999999999999999999
Q ss_pred HHHHHHhhhceeEeCCCCcc--CCccceEEeeCCCceEEEEEC
Q 041835 80 LALAMILHKFTFQLSPTYVH--APTRGISVYPQHGANIILHKI 120 (120)
Q Consensus 80 ~~l~~ll~~f~~~~~~~~~~--~~~~~~~~~p~~~~~v~~~~r 120 (120)
++++.|+++|++++.++... ......++.| .+++|++++|
T Consensus 441 ~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~R 482 (482)
T PTZ00404 441 LAFSNIILNFKLKSIDGKKIDETEEYGLTLKP-NKFKVLLEKR 482 (482)
T ss_pred HHHHHHHHhcEEecCCCCCCCcccccceeecC-CCceeeeecC
Confidence 99999999999998765432 2233566665 4899999987
No 16
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2e-30 Score=194.50 Aligned_cols=116 Identities=27% Similarity=0.515 Sum_probs=95.9
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAKL 80 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~ 80 (120)
+++|+.|+||.|||||.|+++.|++||||++| ++|++|+||||++++ +.+.....++|||.|+|.|+|..+|.+++.+
T Consensus 370 ~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw-~dP~eF~PERFl~~~-d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l 447 (489)
T KOG0156|consen 370 TTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVW-EDPEEFKPERFLDSN-DGKGLDFKLIPFGSGRRICPGEGLARAELFL 447 (489)
T ss_pred ccCCeeEcCEEcCCCCEEEEeehhhhcCCccC-CCccccChhhhcCCc-cccCCceEecCCCCCcCCCCcHHHHHHHHHH
Confidence 57899999999999999999999999999999 899999999999975 2222678899999999999999999999999
Q ss_pred HHHHHhhhceeEeCCCC-ccCCccceEEeeCCCceEEEEE
Q 041835 81 ALAMILHKFTFQLSPTY-VHAPTRGISVYPQHGANIILHK 119 (120)
Q Consensus 81 ~l~~ll~~f~~~~~~~~-~~~~~~~~~~~p~~~~~v~~~~ 119 (120)
+++.|+++|+|+++.+. +.... ..++..+.++.+...+
T Consensus 448 ~la~llq~F~w~~~~~~~d~~e~-~~~~~~~~pl~~~~~~ 486 (489)
T KOG0156|consen 448 FLANLLQRFDWKLPGGKVDMEEA-GLTLKKKKPLKAVPVP 486 (489)
T ss_pred HHHHHHheeeeecCCCCCCCccc-ccceecCCcceeeeec
Confidence 99999999999998661 22222 2444444455554443
No 17
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2e-30 Score=192.07 Aligned_cols=117 Identities=24% Similarity=0.475 Sum_probs=109.1
Q ss_pred ccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHHHH
Q 041835 2 FKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAKLA 81 (120)
Q Consensus 2 ~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~~ 81 (120)
.+|+.|+||.|||||.|.++.+.+.+||++| ++|++|+|||||+... ...+++.++|||.|+|+|+|+++|.+||.+.
T Consensus 401 ~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F-~~p~~F~PeRWL~~~~-~~~~pF~~LPFGfG~R~C~GRRiAElEl~ll 478 (519)
T KOG0159|consen 401 PKDLVLSGYHVPAGTLVVLFLYVLGRNPAYF-PDPEEFLPERWLKPST-KTIHPFASLPFGFGPRMCLGRRIAELELHLL 478 (519)
T ss_pred chhceeccceecCCCeEEEeehhhccChhhC-CCccccChhhhccccc-CCCCCceecCCCCCccccchHHHHHHHHHHH
Confidence 4799999999999999999999999999999 9999999999998774 3358999999999999999999999999999
Q ss_pred HHHHhhhceeEeCCCCccCCccceEEeeCCCceEEEEEC
Q 041835 82 LAMILHKFTFQLSPTYVHAPTRGISVYPQHGANIILHKI 120 (120)
Q Consensus 82 l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 120 (120)
|+.++++|+++..++.+......+++.|..++.++|++|
T Consensus 479 Larllr~f~V~~~~~~pv~~~~~~il~P~~~l~f~f~~r 517 (519)
T KOG0159|consen 479 LARLLRNFKVEFLHEEPVEYVYRFILVPNRPLRFKFRPR 517 (519)
T ss_pred HHHHHHhcceeecCCCCccceeEEEEcCCCCcceeeeeC
Confidence 999999999999887777778899999999999999986
No 18
>PLN02966 cytochrome P450 83A1
Probab=99.97 E-value=3.2e-30 Score=194.07 Aligned_cols=97 Identities=28% Similarity=0.547 Sum_probs=86.9
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAKL 80 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~ 80 (120)
+.+|++++||.|||||.|.++.|++||||++||++|++|+||||++...........++|||.|+|+|+|++||.+|+++
T Consensus 375 ~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~ 454 (502)
T PLN02966 375 CIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEV 454 (502)
T ss_pred cCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999889999999999975432112456899999999999999999999999
Q ss_pred HHHHHhhhceeEeCCCC
Q 041835 81 ALAMILHKFTFQLSPTY 97 (120)
Q Consensus 81 ~l~~ll~~f~~~~~~~~ 97 (120)
+++.|+++|++++.++.
T Consensus 455 ~la~ll~~f~i~~~~~~ 471 (502)
T PLN02966 455 PYANLLLNFNFKLPNGM 471 (502)
T ss_pred HHHHHHHhceeeCCCCC
Confidence 99999999999987764
No 19
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.97 E-value=5.2e-30 Score=192.79 Aligned_cols=118 Identities=24% Similarity=0.450 Sum_probs=98.1
Q ss_pred ccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccc--cCCCcceeeecCCCCcChhHHHHHHHHH
Q 041835 2 FKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKA--SKNQISFFSFGWGPRICIGQNFALLEAK 79 (120)
Q Consensus 2 ~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~--~~~~~~~~~Fg~G~~~C~G~~la~~~~~ 79 (120)
.+|++++||.||+||.|.++.|++||||++| ++|++|+||||++++... ......++|||.|+|+|+|+++|.+|++
T Consensus 378 ~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~-~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~ 456 (503)
T PLN02394 378 LEDAKLGGYDIPAESKILVNAWWLANNPELW-KNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILG 456 (503)
T ss_pred CCCcccCCEEeCCCCEEEEchHHHhCCcccC-CCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHH
Confidence 5689999999999999999999999999999 899999999999754321 1235679999999999999999999999
Q ss_pred HHHHHHhhhceeEeCCCCc-cCCc---cceEEeeCCCceEEEEEC
Q 041835 80 LALAMILHKFTFQLSPTYV-HAPT---RGISVYPQHGANIILHKI 120 (120)
Q Consensus 80 ~~l~~ll~~f~~~~~~~~~-~~~~---~~~~~~p~~~~~v~~~~r 120 (120)
+++|.|+++|++++.++.+ .... ..++......+.+++.+|
T Consensus 457 ~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 501 (503)
T PLN02394 457 IVLGRLVQNFELLPPPGQSKIDVSEKGGQFSLHIAKHSTVVFKPR 501 (503)
T ss_pred HHHHHHHHHceeEeCCCCCcCccccccCceeeccCCCceEEeecC
Confidence 9999999999999876642 2222 234553445999999887
No 20
>PLN02655 ent-kaurene oxidase
Probab=99.97 E-value=5.7e-30 Score=191.28 Aligned_cols=118 Identities=24% Similarity=0.436 Sum_probs=102.2
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAKL 80 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~ 80 (120)
+.+|++++||.|||||.|+++.+++|||+++| ++|++|+||||++.+... .....++|||.|+|.|+|+++|..++++
T Consensus 345 ~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~-~~p~~F~PeR~~~~~~~~-~~~~~~~~Fg~G~r~C~G~~~A~~~~~~ 422 (466)
T PLN02655 345 VHEDTTLGGYDIPAGTQIAINIYGCNMDKKRW-ENPEEWDPERFLGEKYES-ADMYKTMAFGAGKRVCAGSLQAMLIACM 422 (466)
T ss_pred cCCCcccCCEEECCCCEEEecHHHhcCCcccC-CChhccCccccCCCCccc-CCcccccCCCCCCCCCCcHHHHHHHHHH
Confidence 35799999999999999999999999999999 899999999999754321 2346899999999999999999999999
Q ss_pred HHHHHhhhceeEeCCCCc-cCCccceEEeeCCCceEEEEEC
Q 041835 81 ALAMILHKFTFQLSPTYV-HAPTRGISVYPQHGANIILHKI 120 (120)
Q Consensus 81 ~l~~ll~~f~~~~~~~~~-~~~~~~~~~~p~~~~~v~~~~r 120 (120)
+++.|+++|++++.++.. ......++..|++++.+++++|
T Consensus 423 ~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 463 (466)
T PLN02655 423 AIARLVQEFEWRLREGDEEKEDTVQLTTQKLHPLHAHLKPR 463 (466)
T ss_pred HHHHHHHHeEEEeCCCCccccchhheeEeecCCcEEEEeec
Confidence 999999999999876532 3334467788999999999876
No 21
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.97 E-value=6.5e-30 Score=191.52 Aligned_cols=116 Identities=26% Similarity=0.398 Sum_probs=102.0
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAKL 80 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~ 80 (120)
+++|++++||.||+|+.|+++.+++|+|+++| ++|++|+||||++..... .....++|||+|+|.|+|+++|..|+++
T Consensus 353 ~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~-~~p~~F~PeRfl~~~~~~-~~~~~~l~FG~G~r~C~G~~lA~~e~~~ 430 (472)
T PLN02987 353 AMTDIEVKGYTIPKGWKVFASFRAVHLDHEYF-KDARTFNPWRWQSNSGTT-VPSNVFTPFGGGPRLCPGYELARVALSV 430 (472)
T ss_pred CCCCeeECCEEECCCCEEEEehHHhhCCcccC-CCccccCcccCCCCCCCC-CCCcceECCCCCCcCCCcHHHHHHHHHH
Confidence 46899999999999999999999999999999 999999999999754321 2346799999999999999999999999
Q ss_pred HHHHHhhhceeEeCCCCccCCccceEEeeCCCceEEEEEC
Q 041835 81 ALAMILHKFTFQLSPTYVHAPTRGISVYPQHGANIILHKI 120 (120)
Q Consensus 81 ~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 120 (120)
+++.|+++|++++.++..... ..+++|.+++++++++|
T Consensus 431 ~la~ll~~f~~~~~~~~~~~~--~~~~~p~~~~~~~~~~r 468 (472)
T PLN02987 431 FLHRLVTRFSWVPAEQDKLVF--FPTTRTQKRYPINVKRR 468 (472)
T ss_pred HHHHHHhceEEEECCCCceee--cccccCCCCceEEEEec
Confidence 999999999999987654332 45889999999999986
No 22
>PLN02183 ferulate 5-hydroxylase
Probab=99.96 E-value=6.1e-30 Score=193.17 Aligned_cols=119 Identities=24% Similarity=0.420 Sum_probs=95.4
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccc-cCCCcceeeecCCCCcChhHHHHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKA-SKNQISFFSFGWGPRICIGQNFALLEAK 79 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~-~~~~~~~~~Fg~G~~~C~G~~la~~~~~ 79 (120)
+++|++++||.|||||.|.++.|++|||+++| ++|++|+||||++++... ......++|||+|+|.|+|+++|.+|++
T Consensus 387 ~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~ 465 (516)
T PLN02183 387 TAEDAEVAGYFIPKRSRVMINAWAIGRDKNSW-EDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALD 465 (516)
T ss_pred ccCceeECCEEECCCCEEEEehhhhcCCcccc-CCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHH
Confidence 46899999999999999999999999999999 999999999999754321 1234689999999999999999999999
Q ss_pred HHHHHHhhhceeEeCCCCccCCc---c--ceEEeeCCCceEEEEEC
Q 041835 80 LALAMILHKFTFQLSPTYVHAPT---R--GISVYPQHGANIILHKI 120 (120)
Q Consensus 80 ~~l~~ll~~f~~~~~~~~~~~~~---~--~~~~~p~~~~~v~~~~r 120 (120)
+++|.|+++|++++.++....+. . +.+..+...+.+.+++|
T Consensus 466 l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 511 (516)
T PLN02183 466 LAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYR 511 (516)
T ss_pred HHHHHHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecC
Confidence 99999999999998765322111 1 23332333666666655
No 23
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.96 E-value=1e-29 Score=190.26 Aligned_cols=114 Identities=23% Similarity=0.362 Sum_probs=99.0
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAKL 80 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~ 80 (120)
+.+|++++||.||||+.|.++.+++|||+++| ++|++|+||||++.. .....++|||+|+|.|+|+++|..|+++
T Consensus 374 ~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~-~dP~~F~PeR~~~~~----~~~~~~~pFG~G~r~C~G~~lA~~e~~~ 448 (490)
T PLN02302 374 AKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVY-PNPKEFDPSRWDNYT----PKAGTFLPFGLGSRLCPGNDLAKLEISI 448 (490)
T ss_pred ccCCEeECCEEECCCCEEEeeHHHhcCCcccC-CCccccChhhcCCCC----CCCCCccCCCCCCcCCCcHHHHHHHHHH
Confidence 46799999999999999999999999999999 999999999999643 2456899999999999999999999999
Q ss_pred HHHHHhhhceeEeCCCCccCCccceEEeeCCCceEEEEEC
Q 041835 81 ALAMILHKFTFQLSPTYVHAPTRGISVYPQHGANIILHKI 120 (120)
Q Consensus 81 ~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 120 (120)
+++.|+++|++++.++.. .........|.+++++++++|
T Consensus 449 ~la~ll~~f~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~ 487 (490)
T PLN02302 449 FLHHFLLGYRLERLNPGC-KVMYLPHPRPKDNCLARITKV 487 (490)
T ss_pred HHHHHHhcCeeEEcCCCC-cceeCCCCCCCCCceEEEEec
Confidence 999999999999875432 112223489999999999876
No 24
>PLN03018 homomethionine N-hydroxylase
Probab=99.96 E-value=1.9e-29 Score=191.36 Aligned_cols=118 Identities=20% Similarity=0.387 Sum_probs=98.2
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCccccc-----CCCcceeeecCCCCcChhHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKAS-----KNQISFFSFGWGPRICIGQNFAL 75 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~-----~~~~~~~~Fg~G~~~C~G~~la~ 75 (120)
+.+|++++||.|||||.|+++.|++|+||++| ++|++|+||||++++.... .....++|||.|+|.|+|+++|.
T Consensus 398 ~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~-~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~ 476 (534)
T PLN03018 398 ARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIW-KDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGT 476 (534)
T ss_pred cCCCeeECCEEECCCCEEEEChHHhcCCcccC-CCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHH
Confidence 46899999999999999999999999999999 9999999999997543210 23467999999999999999999
Q ss_pred HHHHHHHHHHhhhceeEeCCCC-ccCC--ccceEEeeCCCceEEEEEC
Q 041835 76 LEAKLALAMILHKFTFQLSPTY-VHAP--TRGISVYPQHGANIILHKI 120 (120)
Q Consensus 76 ~~~~~~l~~ll~~f~~~~~~~~-~~~~--~~~~~~~p~~~~~v~~~~r 120 (120)
+|++++++.|+++|++++.++. .... ....+..| .+++|++++|
T Consensus 477 ~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~p-~~~~v~~~~R 523 (534)
T PLN03018 477 IMMVMMLARFLQGFNWKLHQDFGPLSLEEDDASLLMA-KPLLLSVEPR 523 (534)
T ss_pred HHHHHHHHHHHHhceEEeCCCCCCCCccccccceecC-CCeEEEEEec
Confidence 9999999999999999987653 2111 22334444 5999999987
No 25
>PLN02936 epsilon-ring hydroxylase
Probab=99.96 E-value=1.5e-29 Score=190.02 Aligned_cols=118 Identities=28% Similarity=0.576 Sum_probs=100.6
Q ss_pred ccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccc--cCCCcceeeecCCCCcChhHHHHHHHHH
Q 041835 2 FKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKA--SKNQISFFSFGWGPRICIGQNFALLEAK 79 (120)
Q Consensus 2 ~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~--~~~~~~~~~Fg~G~~~C~G~~la~~~~~ 79 (120)
.+|+.++||+||+||.|+++.+++||||++| ++|++|+||||+..+... ......++|||.|+|.|+|+++|+++++
T Consensus 362 ~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~-~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~ 440 (489)
T PLN02936 362 VEDVLPGGYKVNAGQDIMISVYNIHRSPEVW-ERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAI 440 (489)
T ss_pred cCccccCCeEECCCCEEEecHHhccCChhhC-CCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHH
Confidence 4577789999999999999999999999999 899999999999644211 1224589999999999999999999999
Q ss_pred HHHHHHhhhceeEeCCCCccCCccceEEeeCCCceEEEEEC
Q 041835 80 LALAMILHKFTFQLSPTYVHAPTRGISVYPQHGANIILHKI 120 (120)
Q Consensus 80 ~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 120 (120)
++++.|+++|+++++++........++..|.+++.|++++|
T Consensus 441 ~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R 481 (489)
T PLN02936 441 VALAVLLQRLDLELVPDQDIVMTTGATIHTTNGLYMTVSRR 481 (489)
T ss_pred HHHHHHHHhCeEEecCCCccceecceEEeeCCCeEEEEEee
Confidence 99999999999998876443333457788999999999986
No 26
>PLN02971 tryptophan N-hydroxylase
Probab=99.96 E-value=1.3e-29 Score=192.48 Aligned_cols=118 Identities=20% Similarity=0.380 Sum_probs=96.2
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccc--cCCCcceeeecCCCCcChhHHHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKA--SKNQISFFSFGWGPRICIGQNFALLEA 78 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~--~~~~~~~~~Fg~G~~~C~G~~la~~~~ 78 (120)
+++|++++||.|||||.|+++.|++||||++| ++|++|+||||+++.... ...+..++|||.|+|.|+|+++|..|+
T Consensus 411 ~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~ 489 (543)
T PLN02971 411 ALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVW-SDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAIT 489 (543)
T ss_pred cCCCeeECCEEECCCCEEEECcHHhcCChhhC-CCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHH
Confidence 46899999999999999999999999999999 999999999999754321 124568999999999999999999999
Q ss_pred HHHHHHHhhhceeEeCCCCccC---CccceEEeeCCCceEEEEEC
Q 041835 79 KLALAMILHKFTFQLSPTYVHA---PTRGISVYPQHGANIILHKI 120 (120)
Q Consensus 79 ~~~l~~ll~~f~~~~~~~~~~~---~~~~~~~~p~~~~~v~~~~r 120 (120)
+++++.|+++|++++.++.... ...+ ++.-.+.+.+.+++|
T Consensus 490 ~~~la~ll~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 533 (543)
T PLN02971 490 TMMLARLLQGFKWKLAGSETRVELMESSH-DMFLSKPLVMVGELR 533 (543)
T ss_pred HHHHHHHHHhCEEEeCCCCCCcchhhhcC-cccccccceeeeeec
Confidence 9999999999999987643211 1222 442333778877775
No 27
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.96 E-value=1.9e-29 Score=190.60 Aligned_cols=119 Identities=27% Similarity=0.463 Sum_probs=98.3
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccc----cCCCcceeeecCCCCcChhHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKA----SKNQISFFSFGWGPRICIGQNFALL 76 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~----~~~~~~~~~Fg~G~~~C~G~~la~~ 76 (120)
+.+|++++||.||+||.|.++.|++||||++| ++|++|+||||++.+... ......++|||+|+|.|+|+++|.+
T Consensus 381 ~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~-~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~ 459 (517)
T PLN02687 381 AAEECEINGYHIPKGATLLVNVWAIARDPEQW-PDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLR 459 (517)
T ss_pred CCCCeeECCEEECCCCEEEEecHHhcCCcccC-CCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHH
Confidence 46899999999999999999999999999999 999999999999754321 1234579999999999999999999
Q ss_pred HHHHHHHHHhhhceeEeCCCCccC---C--ccceEEeeCCCceEEEEEC
Q 041835 77 EAKLALAMILHKFTFQLSPTYVHA---P--TRGISVYPQHGANIILHKI 120 (120)
Q Consensus 77 ~~~~~l~~ll~~f~~~~~~~~~~~---~--~~~~~~~p~~~~~v~~~~r 120 (120)
|++++++.|+++|++++.++.... . .....+.+..++.+++++|
T Consensus 460 e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 508 (517)
T PLN02687 460 MVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRPR 508 (517)
T ss_pred HHHHHHHHHHHhcceecCCCCCcccCCcccccceeeecCCCeEEeeccC
Confidence 999999999999999987653211 1 2234555666788888876
No 28
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.96 E-value=2.3e-29 Score=187.91 Aligned_cols=112 Identities=25% Similarity=0.454 Sum_probs=98.1
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAKL 80 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~ 80 (120)
+.+|+.++||.|||||.|+++.+++|||+++| ++|++|+||||++.. ....++|||+|+|.|+|+++|.+|+++
T Consensus 350 ~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~-~dP~~F~PeRfl~~~-----~~~~~lpFG~G~r~C~G~~~A~~e~~~ 423 (463)
T PLN02196 350 AVEDVEYEGYLIPKGWKVLPLFRNIHHSADIF-SDPGKFDPSRFEVAP-----KPNTFMPFGNGTHSCPGNELAKLEISV 423 (463)
T ss_pred eccccccCCEEeCCCCEEEeeHHHhcCCchhc-CCcCccChhhhcCCC-----CCCcccCcCCCCCCCchHHHHHHHHHH
Confidence 45799999999999999999999999999999 999999999999632 346899999999999999999999999
Q ss_pred HHHHHhhhceeEeCCCCccCCccceEEeeCCCceEEEEE
Q 041835 81 ALAMILHKFTFQLSPTYVHAPTRGISVYPQHGANIILHK 119 (120)
Q Consensus 81 ~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~ 119 (120)
+++.|+++|++++.++... .....+..|+++++|+++.
T Consensus 424 ~la~ll~~f~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~ 461 (463)
T PLN02196 424 LIHHLTTKYRWSIVGTSNG-IQYGPFALPQNGLPIALSR 461 (463)
T ss_pred HHHHHHHhcEEEEcCCCCc-eEEcccccCCCCceEEEec
Confidence 9999999999998766432 2233456799999999875
No 29
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.96 E-value=1.1e-28 Score=186.03 Aligned_cols=119 Identities=18% Similarity=0.334 Sum_probs=98.1
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCccc--c--cCCCcceeeecCCCCcChhHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSK--A--SKNQISFFSFGWGPRICIGQNFALL 76 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~--~--~~~~~~~~~Fg~G~~~C~G~~la~~ 76 (120)
+.+|++++||.|||||.|.++.|++||||++| ++|++|+||||...... . ......++|||.|+|.|+|+++|.+
T Consensus 380 ~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~-~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~ 458 (514)
T PLN03112 380 SLRATTINGYYIPAKTRVFINTHGLGRNTKIW-DDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVT 458 (514)
T ss_pred cCCCeeEcCEEeCCCCEEEEehHHhhCCcccC-CChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHH
Confidence 46899999999999999999999999999999 99999999998653211 1 1124579999999999999999999
Q ss_pred HHHHHHHHHhhhceeEeCCCCccCC-----ccceEEeeCCCceEEEEEC
Q 041835 77 EAKLALAMILHKFTFQLSPTYVHAP-----TRGISVYPQHGANIILHKI 120 (120)
Q Consensus 77 ~~~~~l~~ll~~f~~~~~~~~~~~~-----~~~~~~~p~~~~~v~~~~r 120 (120)
|++++++.|+++|++++.++..... ...+.+.+++++++++++|
T Consensus 459 e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 507 (514)
T PLN03112 459 MVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATPR 507 (514)
T ss_pred HHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEEeecC
Confidence 9999999999999999875432111 1235556677999999987
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=1e-26 Score=169.85 Aligned_cols=118 Identities=26% Similarity=0.524 Sum_probs=101.2
Q ss_pred ccceEecC----EEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCccccc----CCCcceeeecCCCCcChhHHH
Q 041835 2 FKEIKLGE----YIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKAS----KNQISFFSFGWGPRICIGQNF 73 (120)
Q Consensus 2 ~~d~~l~g----~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~----~~~~~~~~Fg~G~~~C~G~~l 73 (120)
.+|.++-+ |.||+|..|.++...+|+||++| ++|+.|+|+||++++.+.. .-.+.++|||+|++.|+|+.|
T Consensus 358 ~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif-~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~F 436 (486)
T KOG0684|consen 358 HEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIF-PDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSF 436 (486)
T ss_pred ccceeeccCCcceecCCCCEEEeccccccCCcccc-CChhhCChhhccCCCcccccccccccccccccCCCcCCCCchHH
Confidence 46888865 99999999999999999999999 9999999999998776542 123457999999999999999
Q ss_pred HHHHHHHHHHHHhhhceeEeCCCCc-cCCccceEEeeCCCceEEEEEC
Q 041835 74 ALLEAKLALAMILHKFTFQLSPTYV-HAPTRGISVYPQHGANIILHKI 120 (120)
Q Consensus 74 a~~~~~~~l~~ll~~f~~~~~~~~~-~~~~~~~~~~p~~~~~v~~~~r 120 (120)
|.+|++.++..+|+.|++++.++.- .......++.|.++++++.+.|
T Consensus 437 A~~eIk~~~~l~L~~fdleLid~~~P~~d~s~~v~~P~g~v~irYK~R 484 (486)
T KOG0684|consen 437 AYLEIKQFISLLLRHFDLELIDGPFPEVDYSRMVMQPEGDVRIRYKRR 484 (486)
T ss_pred HHHHHHHHHHHHHHHcceeecCCCCCCCCHHHhhcCCCCCceEEEeec
Confidence 9999999999999999999998632 2223356899999999999876
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=1.5e-26 Score=170.85 Aligned_cols=107 Identities=33% Similarity=0.611 Sum_probs=95.3
Q ss_pred CccceEecCEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceeeecCCCCcChhHHHHHHHHHH
Q 041835 1 NFKEIKLGEYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQNFALLEAKL 80 (120)
Q Consensus 1 a~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~ 80 (120)
+++|++++|+.||||+.|++.+++.||||++| ++|++|+|+||. ..++|||+|+|.|+|.+||++|+++
T Consensus 303 ~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f-~~P~~F~p~R~~----------~~~l~FG~G~H~ClG~~lA~~E~~~ 371 (411)
T COG2124 303 ATEDVELGGYRIPAGTVVLLSIGAANRDPEVF-PDPDEFDPERFN----------NAHLPFGGGPHRCLGAALARLELKV 371 (411)
T ss_pred ccCCEeeCCEEeCCCCEEEecHhhhcCChhhC-CChhhcCCCCCC----------CCCcCCCCCCccccCHHHHHHHHHH
Confidence 47899999999999999999999999999999 899999999997 4699999999999999999999999
Q ss_pred HHHHHhhhceeEeCCCCccCCccceEEeeCCCceEEEEE
Q 041835 81 ALAMILHKFTFQLSPTYVHAPTRGISVYPQHGANIILHK 119 (120)
Q Consensus 81 ~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~ 119 (120)
+++.++++|++....+ ........+..|.+...+.++.
T Consensus 372 ~l~~ll~r~~~~~~~~-~~~~~~~~~~~~~g~~~l~v~~ 409 (411)
T COG2124 372 ALAELLRRFPLLLLAE-PPPLVRRPTLVPRGGERLPVRR 409 (411)
T ss_pred HHHHHHHhCchhhcCC-CCCccccccccCCCcceeeeec
Confidence 9999999999987666 3334456677888888877764
No 32
>PLN02648 allene oxide synthase
Probab=99.89 E-value=3.2e-23 Score=155.74 Aligned_cols=94 Identities=22% Similarity=0.402 Sum_probs=79.4
Q ss_pred CccceEec----CEEeCCCCEEEechhhhhcCCCCcCCCCCCeecCCCCCCcccccCCCcceee---------ecCCCCc
Q 041835 1 NFKEIKLG----EYIIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDRFSEGVSKASKNQISFFS---------FGWGPRI 67 (120)
Q Consensus 1 a~~d~~l~----g~~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R~l~~~~~~~~~~~~~~~---------Fg~G~~~ 67 (120)
+.+|++++ ||.||||+.|+++.+.+||||++| ++|++|+|+||+++.... ...+++ ||+|+|.
T Consensus 357 a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~-~dP~~F~PeRf~~~~~~~---~~~~~~f~~g~~~~~~G~G~R~ 432 (480)
T PLN02648 357 AREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVF-DRPEEFVPDRFMGEEGEK---LLKYVFWSNGRETESPTVGNKQ 432 (480)
T ss_pred ecCCEEEecCCceEEECCCCEEEEChHHHhCCcccC-CCcceeCCCCCCCCCccc---cccccccCCCcccCCCCCCCcc
Confidence 35789996 799999999999999999999999 999999999998643221 123333 3678899
Q ss_pred ChhHHHHHHHHHHHHHHHhhhce-eEeCCCCc
Q 041835 68 CIGQNFALLEAKLALAMILHKFT-FQLSPTYV 98 (120)
Q Consensus 68 C~G~~la~~~~~~~l~~ll~~f~-~~~~~~~~ 98 (120)
|+|+++|..|++++++.|+++|+ |++.++..
T Consensus 433 C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~~ 464 (480)
T PLN02648 433 CAGKDFVVLVARLFVAELFLRYDSFEIEVDTS 464 (480)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCEEeecCCcc
Confidence 99999999999999999999998 99877653
No 33
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=81.75 E-value=1.6 Score=29.76 Aligned_cols=19 Identities=32% Similarity=0.745 Sum_probs=16.5
Q ss_pred ccceEecCEEeCCCCEEEe
Q 041835 2 FKEIKLGEYIIPPGVFLSL 20 (120)
Q Consensus 2 ~~d~~l~g~~ip~gt~v~~ 20 (120)
.+|+.++|..|||||.+..
T Consensus 76 le~i~i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 76 LEDIQIGGILIPKGTYLYG 94 (200)
T ss_pred cCceEECCEEeCCCCEEEE
Confidence 4799999999999998764
No 34
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=76.55 E-value=0.97 Score=24.68 Aligned_cols=8 Identities=25% Similarity=0.713 Sum_probs=6.3
Q ss_pred ecCCCCCC
Q 041835 40 NPDRFSEG 47 (120)
Q Consensus 40 ~P~R~l~~ 47 (120)
||||||.-
T Consensus 44 DPERWLP~ 51 (59)
T PF08492_consen 44 DPERWLPK 51 (59)
T ss_pred CccccCch
Confidence 68999863
No 35
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=72.62 E-value=2.5 Score=26.53 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=20.4
Q ss_pred ccceEecCEEeCCCCEEEechhhhhcCCCCc
Q 041835 2 FKEIKLGEYIIPPGVFLSLPIIFVHRDHEYW 32 (120)
Q Consensus 2 ~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~ 32 (120)
.+|.+++|-.||+|++|+..-. .|+++|
T Consensus 74 ~~d~~~~g~~i~~GtWv~~~k~---~ddelW 101 (122)
T PF14550_consen 74 PEDMEIGGETIPKGTWVVGVKI---TDDELW 101 (122)
T ss_pred CCCcccCCeeecceEEEEEEEe---cCHHHH
Confidence 4689999999999999854322 245666
No 36
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=65.45 E-value=5.8 Score=25.50 Aligned_cols=23 Identities=13% Similarity=0.389 Sum_probs=16.7
Q ss_pred cChhHHHHHHHHHHHHHHHhhhc
Q 041835 67 ICIGQNFALLEAKLALAMILHKF 89 (120)
Q Consensus 67 ~C~G~~la~~~~~~~l~~ll~~f 89 (120)
+|.|+.++..++-.+++.|+..-
T Consensus 19 N~~gKKFsE~QiN~FIs~lItsP 41 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITSP 41 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS-
T ss_pred cccchHHHHHHHHHHHHHHhcCC
Confidence 79999999999999999998764
No 37
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=63.17 E-value=7.6 Score=25.15 Aligned_cols=39 Identities=21% Similarity=0.599 Sum_probs=26.3
Q ss_pred ccceEecCEEeCCCCEEEech-----h--hhhcCCCCcCCCCCCeecC
Q 041835 2 FKEIKLGEYIIPPGVFLSLPI-----I--FVHRDHEYWGDDAKKFNPD 42 (120)
Q Consensus 2 ~~d~~l~g~~ip~gt~v~~~~-----~--~~~~d~~~~~~~p~~f~P~ 42 (120)
.+|++|+|..||+|+.-+..+ | -+|++...||. ..++|+
T Consensus 53 ~~dv~igGk~l~AG~Ysl~tiP~~~~WtvI~n~~~~~wG~--~~Y~~~ 98 (145)
T PF11138_consen 53 SKDVTIGGKKLKAGTYSLFTIPGEDEWTVIFNKDTDQWGA--YNYDPS 98 (145)
T ss_pred CCCeEECCEEcCCeeEEEEEecCCCeEEEEEECCCCccCc--cccCch
Confidence 479999999999999765432 2 34666677753 445444
No 38
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=59.82 E-value=8.9 Score=29.12 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=16.4
Q ss_pred ccceEecCEEeCCCCEEEe
Q 041835 2 FKEIKLGEYIIPPGVFLSL 20 (120)
Q Consensus 2 ~~d~~l~g~~ip~gt~v~~ 20 (120)
.+|+.++|..||+||.|..
T Consensus 279 le~~~v~~~~ipkgt~l~g 297 (410)
T TIGR03779 279 LEPIQAGDLVIPKGTVLYG 297 (410)
T ss_pred cCceeeCCEEecCCCEEEE
Confidence 4789999999999998764
No 39
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=55.27 E-value=5.4 Score=26.69 Aligned_cols=36 Identities=22% Similarity=0.510 Sum_probs=25.1
Q ss_pred CCeecCCCCCCcccccCCCcceeeecCCCCcChhHH
Q 041835 37 KKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQN 72 (120)
Q Consensus 37 ~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~ 72 (120)
.+++|++|-.---.-..+....+-|..|+-.|-|..
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 577888875422222235667889999999999854
No 40
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=50.68 E-value=7.6 Score=25.89 Aligned_cols=35 Identities=29% Similarity=0.576 Sum_probs=24.2
Q ss_pred CCeecCCCCCCcccccCCCcceeeecCCCCcChhH
Q 041835 37 KKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQ 71 (120)
Q Consensus 37 ~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~ 71 (120)
.+|+|+||-.---....+.-..+-|..|+-.|.|-
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence 57888888543222223456778899999999975
No 41
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=50.64 E-value=12 Score=21.95 Aligned_cols=21 Identities=19% Similarity=0.418 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhhceeEeCCC
Q 041835 76 LEAKLALAMILHKFTFQLSPT 96 (120)
Q Consensus 76 ~~~~~~l~~ll~~f~~~~~~~ 96 (120)
..|+-.+.++|+-|||.|++-
T Consensus 60 ~~IrdAVsqVLkGYDWtLVPm 80 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVPM 80 (84)
T ss_pred HHHHHHHHHHhccCCceeeec
Confidence 456778899999999998753
No 42
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=49.07 E-value=27 Score=23.21 Aligned_cols=34 Identities=21% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCeecCCCCCCcccccCCCcceeeecCCCCcChh
Q 041835 37 KKFNPDRFSEGVSKASKNQISFFSFGWGPRICIG 70 (120)
Q Consensus 37 ~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G 70 (120)
.+++|++|-.---....+.-..+-|+.|+-.|.|
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitG 62 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITG 62 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEe
Confidence 5778888754222222345677889999999998
No 43
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=42.83 E-value=15 Score=25.03 Aligned_cols=34 Identities=24% Similarity=0.574 Sum_probs=21.5
Q ss_pred CCeecCCCCCCcccccCCCcceeeecCCCCcChh
Q 041835 37 KKFNPDRFSEGVSKASKNQISFFSFGWGPRICIG 70 (120)
Q Consensus 37 ~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G 70 (120)
.+|+|.||-.---....+.....-|++|+-.|.|
T Consensus 50 ~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctg 83 (200)
T KOG3302|consen 50 AEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTG 83 (200)
T ss_pred cccCcccccEEEEEEcCCceEEEEecCCcEEEec
Confidence 5788888753211111234456679999999985
No 44
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=41.02 E-value=11 Score=17.50 Aligned_cols=6 Identities=50% Similarity=1.348 Sum_probs=3.4
Q ss_pred eecCCC
Q 041835 39 FNPDRF 44 (120)
Q Consensus 39 f~P~R~ 44 (120)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 356665
No 45
>PRK00394 transcription factor; Reviewed
Probab=40.89 E-value=14 Score=24.77 Aligned_cols=34 Identities=26% Similarity=0.572 Sum_probs=23.7
Q ss_pred CCeecCCCCCCcccccCCCcceeeecCCCCcChh
Q 041835 37 KKFNPDRFSEGVSKASKNQISFFSFGWGPRICIG 70 (120)
Q Consensus 37 ~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G 70 (120)
.+|+|+||-.---....+.-..+-|..|+-.|.|
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc
Confidence 5788888754322222345678889999999988
No 46
>PLN00062 TATA-box-binding protein; Provisional
Probab=38.85 E-value=14 Score=24.80 Aligned_cols=35 Identities=23% Similarity=0.574 Sum_probs=23.9
Q ss_pred CCeecCCCCCCcccccCCCcceeeecCCCCcChhH
Q 041835 37 KKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQ 71 (120)
Q Consensus 37 ~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~ 71 (120)
.+|+|++|-.---....+....+-|+.|+-.|.|.
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGa 63 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 63 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEec
Confidence 57888887542222223455788899999999974
No 47
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=37.82 E-value=17 Score=25.16 Aligned_cols=24 Identities=29% Similarity=0.684 Sum_probs=18.6
Q ss_pred Eechhhh-hcCCCCcCCCCCCeecCC
Q 041835 19 SLPIIFV-HRDHEYWGDDAKKFNPDR 43 (120)
Q Consensus 19 ~~~~~~~-~~d~~~~~~~p~~f~P~R 43 (120)
.++-|.- |.|+.+| .|.+.|+|.|
T Consensus 187 GiPGW~~~n~~~~FY-~d~~~FRp~R 211 (212)
T PF11227_consen 187 GIPGWWPDNEDPAFY-DDTDVFRPGR 211 (212)
T ss_pred CCCCCCCCCCCcccc-cCccccCCCC
Confidence 3444444 8899999 8999999987
No 48
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=33.67 E-value=15 Score=21.24 Aligned_cols=35 Identities=17% Similarity=0.412 Sum_probs=22.3
Q ss_pred CCeecCCCCCCcccccCCCcceeeecCCCCcChhH
Q 041835 37 KKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQ 71 (120)
Q Consensus 37 ~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~ 71 (120)
.+++|++|-.---....+....+-|..|+-.|.|.
T Consensus 31 ~~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 31 VEYEPERFPGLIYRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp EEEETTTESSEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred cEEeeccCCeEEEeecCCcEEEEEEcCCEEEEEec
Confidence 46778876432111122456778899999999874
No 49
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=32.72 E-value=20 Score=23.93 Aligned_cols=34 Identities=24% Similarity=0.592 Sum_probs=23.0
Q ss_pred CCeecCCCCCCcccccCCCcceeeecCCCCcChh
Q 041835 37 KKFNPDRFSEGVSKASKNQISFFSFGWGPRICIG 70 (120)
Q Consensus 37 ~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G 70 (120)
.+|+|++|-.---....+....+-|+.|+-.|.|
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTG 62 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTG 62 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEe
Confidence 6788888754222222345567889999999987
No 50
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=32.47 E-value=20 Score=19.23 Aligned_cols=10 Identities=50% Similarity=0.999 Sum_probs=8.6
Q ss_pred eecCCCCcCh
Q 041835 60 SFGWGPRICI 69 (120)
Q Consensus 60 ~Fg~G~~~C~ 69 (120)
+||-|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6999999885
No 51
>PHA03162 hypothetical protein; Provisional
Probab=30.36 E-value=30 Score=22.01 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=18.5
Q ss_pred cCCCCcChhHHHHHHHHHHHHHHH
Q 041835 62 GWGPRICIGQNFALLEAKLALAMI 85 (120)
Q Consensus 62 g~G~~~C~G~~la~~~~~~~l~~l 85 (120)
++|.+.||++...+-++..-|+.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468899999988888777666654
No 52
>KOG1939 consensus Oxoprolinase [Amino acid transport and metabolism]
Probab=29.16 E-value=19 Score=30.15 Aligned_cols=57 Identities=18% Similarity=0.329 Sum_probs=34.1
Q ss_pred ecCCCCCCcccccCCCcceeeec--CCCCcCh-hHHHHHHHHHHHH-HHHhhhceeEeCCC
Q 041835 40 NPDRFSEGVSKASKNQISFFSFG--WGPRICI-GQNFALLEAKLAL-AMILHKFTFQLSPT 96 (120)
Q Consensus 40 ~P~R~l~~~~~~~~~~~~~~~Fg--~G~~~C~-G~~la~~~~~~~l-~~ll~~f~~~~~~~ 96 (120)
+|=|-|.+...-.........|| +|.|+|. .+.|...++.+-- +.+|+.|-+-+++-
T Consensus 458 RPIR~lTesrG~d~s~H~LacFGGAGgQHacaiA~~LGI~kVlIHkYssiLSAYGmaLAdV 518 (1247)
T KOG1939|consen 458 RPIRALTESRGHDTSNHALACFGGAGGQHACAIAKSLGILKVLIHKYSSILSAYGMALADV 518 (1247)
T ss_pred chHHHHHhhcCCcccceeeEeecCCCcchhHHHHhhcchhhhhHHHHHHHHhhhhhhhhhh
Confidence 44455544333223456778898 6778886 5555555554443 56778887766543
No 53
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=28.52 E-value=77 Score=19.72 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=16.0
Q ss_pred CcChhHHHHHHHHHHHHHHHhh
Q 041835 66 RICIGQNFALLEAKLALAMILH 87 (120)
Q Consensus 66 ~~C~G~~la~~~~~~~l~~ll~ 87 (120)
|.|||..+++.....++..|-.
T Consensus 5 H~Cpgl~~G~r~~~~a~~~l~~ 26 (131)
T PF02663_consen 5 HLCPGLALGYRMAKYALEELGI 26 (131)
T ss_dssp S--HHHHHHHHHHHHHHHHHTS
T ss_pred CcCccHHHHHHHHHHHHHHcCC
Confidence 7899999999888887776633
No 54
>PRK06789 flagellar motor switch protein; Validated
Probab=27.35 E-value=56 Score=18.64 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=15.4
Q ss_pred ceEecCEEeCCCCEEEec
Q 041835 4 EIKLGEYIIPPGVFLSLP 21 (120)
Q Consensus 4 d~~l~g~~ip~gt~v~~~ 21 (120)
|+.++|..|.+|..|.++
T Consensus 45 dI~vNg~lia~GEvVvv~ 62 (74)
T PRK06789 45 RLMLENEEIGTGKILTKN 62 (74)
T ss_pred EEEECCEEEeEEeEEEEC
Confidence 677799999999998876
No 55
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=27.14 E-value=17 Score=16.40 Aligned_cols=7 Identities=43% Similarity=1.184 Sum_probs=3.7
Q ss_pred eecCCCC
Q 041835 39 FNPDRFS 45 (120)
Q Consensus 39 f~P~R~l 45 (120)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 3466653
No 56
>PF01629 DUF22: Domain of unknown function DUF22; InterPro: IPR002572 This region is found in 1 to 3 copies in archaeal proteins whose function is unknown. It only appears in multiple copies in proteins from Archaeoglobus fulgidus.
Probab=26.86 E-value=66 Score=19.89 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=19.6
Q ss_pred CEEeCCCCEEEechhhhhcCCCCc
Q 041835 9 EYIIPPGVFLSLPIIFVHRDHEYW 32 (120)
Q Consensus 9 g~~ip~gt~v~~~~~~~~~d~~~~ 32 (120)
-..||++|+++.+.+.-|.--.+.
T Consensus 61 ~I~iP~~tIv~p~~~~rha~G~vi 84 (112)
T PF01629_consen 61 KIEIPPNTIVMPCAYMRHALGSVI 84 (112)
T ss_pred EEecCCCCEEEEchHhhccCccEE
Confidence 378999999999999888765554
No 57
>PF06718 DUF1203: Protein of unknown function (DUF1203); InterPro: IPR009593 This family consists of several hypothetical bacterial proteins of around 155 residues in length. Family members are present in Rhizobium, Agrobacterium and Streptomyces species.
Probab=23.86 E-value=1.9e+02 Score=17.98 Aligned_cols=83 Identities=13% Similarity=0.059 Sum_probs=53.1
Q ss_pred EeCCCCEEEechhhhhcCCCCcCCCCCCeecCC----CCCCccc---c-cCCCcceeeecCCCCcChhHHHHHHHHHHHH
Q 041835 11 IIPPGVFLSLPIIFVHRDHEYWGDDAKKFNPDR----FSEGVSK---A-SKNQISFFSFGWGPRICIGQNFALLEAKLAL 82 (120)
Q Consensus 11 ~ip~gt~v~~~~~~~~~d~~~~~~~p~~f~P~R----~l~~~~~---~-~~~~~~~~~Fg~G~~~C~G~~la~~~~~~~l 82 (120)
.+++|..+++..|.-+..+.-|.+.--.|.-+. +...+.- . .......-.|+.+.++.-|+-..-.++...+
T Consensus 10 ~~~~Ge~~lLlsy~p~~~~~PY~e~gpIFvha~~c~~~~~~~~~P~~l~~~r~~~lR~Y~a~~~iv~g~v~~g~~~~~~l 89 (117)
T PF06718_consen 10 DAEPGEELLLLSYRPFPAPSPYRETGPIFVHAEACEAYDGVDELPPVLYRGRLLSLRAYDADGRIVTGRVVEGADIEARL 89 (117)
T ss_pred cCCCCCeEEEEecCCCCCCCCCCCCCCEEEecCcccCCCCCCCCChhhccCCCeEEEeEcCCCCEEeeeEEcchhHHHHH
Confidence 478899888888887776665533333443332 2211110 0 1133456789998888877777778888888
Q ss_pred HHHhhhceeEe
Q 041835 83 AMILHKFTFQL 93 (120)
Q Consensus 83 ~~ll~~f~~~~ 93 (120)
..++.+-++..
T Consensus 90 ~~~fa~p~Vay 100 (117)
T PF06718_consen 90 AELFADPEVAY 100 (117)
T ss_pred HHHhcCCCceE
Confidence 88888877754
No 58
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=20.66 E-value=1.4e+02 Score=19.84 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=22.3
Q ss_pred CCeecCCCCCCcccccCCCcceeeecCCCCcChhH
Q 041835 37 KKFNPDRFSEGVSKASKNQISFFSFGWGPRICIGQ 71 (120)
Q Consensus 37 ~~f~P~R~l~~~~~~~~~~~~~~~Fg~G~~~C~G~ 71 (120)
.+|+| +|-.---....+.-..+-|+.|+-.|.|-
T Consensus 30 ~eYeP-~fpgli~R~~~Pk~t~lIF~sGKiviTGa 63 (174)
T cd04517 30 VEYNP-RYPKVTMRLREPRATASVWSSGKITITGA 63 (174)
T ss_pred CEEeC-CCCEEEEEecCCcEEEEEECCCeEEEEcc
Confidence 57788 77532222222445678899999999975
Done!