BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041836
(574 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147854286|emb|CAN81307.1| hypothetical protein VITISV_026538 [Vitis vinifera]
Length = 1328
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 108/192 (56%), Gaps = 40/192 (20%)
Query: 411 EEKNVKMDQVMTEEKNEKTESVIASERA-------SSIAAQVTEKSLVEEQESRDVEMIK 463
++KNVK++ E KN K E I +E A S+ A+V E + EQ SRDVE++
Sbjct: 785 DKKNVKIED--CEGKNTKVEESIQTETAKTDDRNGSNFVAEVAE--IDREQVSRDVEVVA 840
Query: 464 K-------KQDLPS---AENERDVAEATVDVKAEETNKKAETNLESTEEAVVDGK--KAD 511
+ ++D+P A+ ++D +V A+ET K NLES A DG+ K++
Sbjct: 841 EVKKLENVEEDIPLSVEADKDKDGEGKLSEVDAKETVKTNADNLES---AKTDGEIAKSN 897
Query: 512 PP----TKEGDDTKNSKEFSAKPPQ------KSSGNLLSKVKQSLGKVKKAIVGKSPSSK 561
PP K GDD+K S AKPP+ K S NL+SKVKQS+ KVKKAI GKSPS K
Sbjct: 898 PPNLETLKNGDDSKTS----AKPPKQDDSVKKHSNNLISKVKQSIVKVKKAITGKSPSPK 953
Query: 562 TLQSEAKGDENI 573
L EAKGDE I
Sbjct: 954 ALLPEAKGDEKI 965
>gi|356533515|ref|XP_003535309.1| PREDICTED: uncharacterized protein LOC100790707 [Glycine max]
Length = 930
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 44/61 (72%), Gaps = 4/61 (6%)
Query: 514 TKEGDDTKNSKEFS----AKPPQKSSGNLLSKVKQSLGKVKKAIVGKSPSSKTLQSEAKG 569
TKE D TK SK+ AKP QK S N++SKVKQSL K KKAI GKSPSSK L S+AKG
Sbjct: 866 TKESDATKTSKDLPKETPAKPAQKQSNNIISKVKQSLVKAKKAITGKSPSSKNLSSDAKG 925
Query: 570 D 570
D
Sbjct: 926 D 926
>gi|356574060|ref|XP_003555170.1| PREDICTED: uncharacterized protein LOC100776005 [Glycine max]
Length = 752
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 43/61 (70%), Gaps = 4/61 (6%)
Query: 514 TKEGDDTKNSKEFS----AKPPQKSSGNLLSKVKQSLGKVKKAIVGKSPSSKTLQSEAKG 569
TKE D TK SK+ AKP QK S N++SKVKQSL K KKAI GKSPSSK L SE KG
Sbjct: 688 TKENDATKTSKDLPKETPAKPAQKQSNNIISKVKQSLVKAKKAITGKSPSSKNLSSEPKG 747
Query: 570 D 570
D
Sbjct: 748 D 748
>gi|255543050|ref|XP_002512588.1| GRIP and coiled-coil domain-containing protein, putative [Ricinus
communis]
gi|223548549|gb|EEF50040.1| GRIP and coiled-coil domain-containing protein, putative [Ricinus
communis]
Length = 799
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 44/61 (72%), Gaps = 4/61 (6%)
Query: 514 TKEGDDTKNSK----EFSAKPPQKSSGNLLSKVKQSLGKVKKAIVGKSPSSKTLQSEAKG 569
TK GDD K S+ E AKP QK S N+L+KVKQSL K KKAI+GKSPSSKTL S+ K
Sbjct: 735 TKGGDDVKTSRDLPTEVPAKPNQKQSNNILTKVKQSLVKAKKAIIGKSPSSKTLASDTKD 794
Query: 570 D 570
D
Sbjct: 795 D 795
>gi|224124296|ref|XP_002329988.1| predicted protein [Populus trichocarpa]
gi|222871413|gb|EEF08544.1| predicted protein [Populus trichocarpa]
Length = 757
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 46/65 (70%), Gaps = 4/65 (6%)
Query: 514 TKEGDDTKNS----KEFSAKPPQKSSGNLLSKVKQSLGKVKKAIVGKSPSSKTLQSEAKG 569
TK+ DD K S +E AKP QK S N+L+KVKQSL K KKAI+GKSP+ KT+ S+ KG
Sbjct: 692 TKDADDIKVSQDLPREVPAKPTQKHSNNILTKVKQSLVKAKKAIIGKSPTPKTVSSDTKG 751
Query: 570 DENIN 574
D +N
Sbjct: 752 DVKVN 756
>gi|357441957|ref|XP_003591256.1| hypothetical protein MTR_1g084990 [Medicago truncatula]
gi|355480304|gb|AES61507.1| hypothetical protein MTR_1g084990 [Medicago truncatula]
Length = 1132
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 42/61 (68%), Gaps = 4/61 (6%)
Query: 514 TKEGDDTKNSKEFS----AKPPQKSSGNLLSKVKQSLGKVKKAIVGKSPSSKTLQSEAKG 569
TKE D T SK+ AKP QK S N+++KVKQSL K KKAI GKSPSSK L S+ KG
Sbjct: 1068 TKENDTTTISKDLPKETPAKPAQKQSNNIIAKVKQSLVKAKKAITGKSPSSKNLSSDPKG 1127
Query: 570 D 570
D
Sbjct: 1128 D 1128
>gi|224122806|ref|XP_002318920.1| predicted protein [Populus trichocarpa]
gi|222857296|gb|EEE94843.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 47/65 (72%), Gaps = 4/65 (6%)
Query: 514 TKEGDDTKNS----KEFSAKPPQKSSGNLLSKVKQSLGKVKKAIVGKSPSSKTLQSEAKG 569
T++ +D K S +E AKP QK S N+L++VKQSL K KKAI+GKSP+ KT+ S++KG
Sbjct: 659 TQDAEDAKESQDLPREVPAKPTQKHSNNILTRVKQSLVKAKKAIIGKSPTPKTVSSDSKG 718
Query: 570 DENIN 574
D +N
Sbjct: 719 DVKVN 723
>gi|449435578|ref|XP_004135572.1| PREDICTED: uncharacterized protein LOC101216708 [Cucumis sativus]
Length = 1343
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 37/47 (78%)
Query: 524 KEFSAKPPQKSSGNLLSKVKQSLGKVKKAIVGKSPSSKTLQSEAKGD 570
KE +KP K S N+LSKVKQSL K KKAI+GKSPSSKTL SEA+ D
Sbjct: 1293 KEVPSKPSHKHSHNILSKVKQSLVKAKKAIIGKSPSSKTLSSEARDD 1339
>gi|145497979|ref|XP_001434978.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402106|emb|CAK67581.1| unnamed protein product [Paramecium tetraurelia]
Length = 5605
Score = 61.6 bits (148), Expect = 9e-07, Method: Composition-based stats.
Identities = 95/457 (20%), Positives = 188/457 (41%), Gaps = 56/457 (12%)
Query: 80 SEEPLEILSEKKVAIEASKETPQE-KPGAEAGKEDAEETVPVGTVVQEEKSAVESLPEE- 137
++E ++ S+ KV + K+ QE K + K+ +ET V +++ S + + +E
Sbjct: 1098 TQEIKQVNSDIKVVNQEVKQVNQEIKQTNQEEKQTTQETKSVNQEIRQNNSETQQINQET 1157
Query: 138 KPLIEAVENAEKEKKAV-EVAKNVDEEPEVEAVEKERPPAETLPEEKPATETVESAQEDK 196
K +I ++ +E + V + K ++E + E ++ ET ++ ET E +QE K
Sbjct: 1158 KSVISETKSTNQETQQVNQETKQTNQEVKQTTQETKQINQET---KQTNQETREVSQETK 1214
Query: 197 PAVEEVEKLPEEKRAAEAVGSVQGVKPAETSAEEKPAAVVEEAEKLEKEEPAATNVNVQE 256
+E+++ +E + Q VK ++ V +E ++ +E T Q
Sbjct: 1215 QVNQEIKQTTQENKQVN-----QEVKQETQQVNQQTKQVSQETQQTNQETRQTTQEVKQT 1269
Query: 257 VIE--KVNNHIKEETDDNKAKDNTATEQVEEEIETENVEPISSTEDVG------RSADSK 308
E +VN +K+ T + K + N T+Q E+I+ N + +T++ + D K
Sbjct: 1270 NQESKQVNQEVKQTTQETK-QTNEQTKQTNEQIKQSNEQIKQATQETKQITQEIKQVDQK 1328
Query: 309 AMAIV----DEMKAKPQE-----PSKVIVEEFAEKFEKDNHGTKPAEKEENISAGAEPTA 359
V D +K + P K+ E E E+ N P ++ I +
Sbjct: 1329 QQTAVPYDHDTIKEGYSDTPGLKPGKIDQSEQQECQEQTNDKDTPLDRP--IEKKSVSRT 1386
Query: 360 IEISPATNDEAQADLKEVANDSPVSG------IVEKIDDERRRDGTTVIETDIAELKEEK 413
++ T++EAQA + + D +S I++K+D + ET+ K +
Sbjct: 1387 VQQQEQTSEEAQAIIIDSKVDQSLSNSEQNQEIIKKVDQKVESSQNNAQETEQVTSKVTE 1446
Query: 414 NVKMDQVMTEEKNEKTESVIASERASSIAAQVTEKSLVEEQESRDVEMIKKKQDLPSAEN 473
+T++ N+++ + ++ Q K++ E ES ++N
Sbjct: 1447 TTSQTNSITQQTNDQSSITNKQTQQTNETIQQNNKTIQETNES-------------ISQN 1493
Query: 474 ERDVAEATVDVKAEETNKKAETNLESTEEAVVDGKKA 510
+ V E ET ++ ++ T E V KA
Sbjct: 1494 NKTVQETN------ETTQQNNKTIQETNETVQQVNKA 1524
>gi|296089859|emb|CBI39678.3| unnamed protein product [Vitis vinifera]
Length = 778
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 85/166 (51%), Gaps = 37/166 (22%)
Query: 438 ASSIAA-QVTEKSLVEEQESRDVEMIK--KKQDLPSAENERD------VAEATVDVKAEE 488
+SS+AA +VTEK E SRDVE+ KK++L S E ++D + E T +
Sbjct: 611 SSSLAATEVTEKLFEGENTSRDVELFSENKKEELTSVETDKDGELEGKLDEVTTADIVKP 670
Query: 489 TNKKAETNLESTEEA------------------VVDGKKADPPT---KEGDDTKNSK--- 524
T + ET LE E+ V + K+D P K+G D K ++
Sbjct: 671 TTEPPETELEVKGESQETELELKEEETAKASKEVNEAAKSDVPLESAKDGVDEKTTQDLP 730
Query: 525 --EFSAKPPQKSSGNLLSKVKQSLGKVKKAIVGKSPSSKTLQSEAK 568
E SAKP QK S N++SKVKQSL K KKAI GK SS++ Q + K
Sbjct: 731 KQEVSAKPAQKQSNNIISKVKQSLVKAKKAITGK--SSRSTQRDIK 774
>gi|110741193|dbj|BAF02147.1| hypothetical protein [Arabidopsis thaliana]
Length = 637
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 80/159 (50%), Gaps = 41/159 (25%)
Query: 436 ERASSIAAQVTEKSLVEEQE----SRDV--------EMIKKKQDLPSAENERDVAEATVD 483
E+A + V E+ L +EQE ++DV E IKK D P AE
Sbjct: 484 EKAITDEKHVVEEPLKDEQENVSEAKDVVTKLAAEDENIKKDTDTPVAEG---------- 533
Query: 484 VKAEETNKKAETNLESTEEAVVDGKKADPPT-------------KEGDDTKNSKEFSAK- 529
K+EET K ET+ ES E+ K+ +P T KE D+ K E + K
Sbjct: 534 -KSEETLK--ETDTESVEKEAAANKQEEPITEKVAEVVETAPVAKEIDEAKQQPEVTTKE 590
Query: 530 --PPQKSSGNLLSKVKQSLGKVKKAIVGKSPSSKTLQSE 566
QK S +++SKVKQSL K KKAI+G+SPSSKT+ +E
Sbjct: 591 APAKQKHSNSIISKVKQSLVKAKKAIIGRSPSSKTITTE 629
>gi|6671967|gb|AAF23226.1|AC013454_13 unknown protein [Arabidopsis thaliana]
gi|6714403|gb|AAF26092.1|AC012393_18 unknown protein [Arabidopsis thaliana]
Length = 660
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 80/159 (50%), Gaps = 41/159 (25%)
Query: 436 ERASSIAAQVTEKSLVEEQE----SRDV--------EMIKKKQDLPSAENERDVAEATVD 483
E+A + V E+ L +EQE ++DV E IKK D P AE
Sbjct: 507 EKAITDEKHVVEEPLKDEQENVSEAKDVVTKLAAEDENIKKDTDTPVAEG---------- 556
Query: 484 VKAEETNKKAETNLESTEEAVVDGKKADPPT-------------KEGDDTKNSKEFSAK- 529
K+EET K ET+ ES E+ K+ +P T KE D+ K E + K
Sbjct: 557 -KSEETLK--ETDTESVEKEAAANKQEEPITEKVAEVVETAPVAKEIDEAKQQPEVTTKE 613
Query: 530 --PPQKSSGNLLSKVKQSLGKVKKAIVGKSPSSKTLQSE 566
QK S +++SKVKQSL K KKAI+G+SPSSKT+ +E
Sbjct: 614 APAKQKHSNSIISKVKQSLVKAKKAIIGRSPSSKTITTE 652
>gi|30679640|ref|NP_187241.2| neurofilament protein-related protein [Arabidopsis thaliana]
gi|332640792|gb|AEE74313.1| neurofilament protein-related protein [Arabidopsis thaliana]
Length = 673
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 80/159 (50%), Gaps = 41/159 (25%)
Query: 436 ERASSIAAQVTEKSLVEEQE----SRDV--------EMIKKKQDLPSAENERDVAEATVD 483
E+A + V E+ L +EQE ++DV E IKK D P AE
Sbjct: 520 EKAITDEKHVVEEPLKDEQENVSEAKDVVTKLAAEDENIKKDTDTPVAEG---------- 569
Query: 484 VKAEETNKKAETNLESTEEAVVDGKKADPPT-------------KEGDDTKNSKEFSAK- 529
K+EET K ET+ ES E+ K+ +P T KE D+ K E + K
Sbjct: 570 -KSEETLK--ETDTESVEKEAAANKQEEPITEKVAEVVETAPVAKEIDEAKQQPEVTTKE 626
Query: 530 --PPQKSSGNLLSKVKQSLGKVKKAIVGKSPSSKTLQSE 566
QK S +++SKVKQSL K KKAI+G+SPSSKT+ +E
Sbjct: 627 APAKQKHSNSIISKVKQSLVKAKKAIIGRSPSSKTITTE 665
>gi|147770955|emb|CAN76245.1| hypothetical protein VITISV_023381 [Vitis vinifera]
Length = 778
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 86/166 (51%), Gaps = 37/166 (22%)
Query: 438 ASSIAA-QVTEKSLVEEQESRDVEMIK--KKQDLPSAENERD---------VAEATV--- 482
+SS+AA +VTEK E SRDVE+ KK++L S E ++D V A +
Sbjct: 611 SSSLAATEVTEKLFEGENTSRDVELFSENKKEELTSVETDKDGELEGKLDEVTTADIVKP 670
Query: 483 ---------DVKAEETNKKAETNLESTEEA---VVDGKKADPPT---KEGDDTKNSK--- 524
+VK E + E E T +A V + K+D P K+G D K ++
Sbjct: 671 TTEPTETELEVKGESQETELELKEEETAKASKEVNEAAKSDVPLESAKDGVDEKTTQDLP 730
Query: 525 --EFSAKPPQKSSGNLLSKVKQSLGKVKKAIVGKSPSSKTLQSEAK 568
E SAKP QK S N++SKVKQSL K KKAI GK SS++ Q + K
Sbjct: 731 KQEVSAKPAQKQSNNIISKVKQSLVKAKKAITGK--SSRSTQRDIK 774
>gi|123400471|ref|XP_001301665.1| Beige/BEACH domain containing protein [Trichomonas vaginalis G3]
gi|121882874|gb|EAX88735.1| Beige/BEACH domain containing protein [Trichomonas vaginalis G3]
Length = 3187
Score = 50.4 bits (119), Expect = 0.003, Method: Composition-based stats.
Identities = 81/307 (26%), Positives = 140/307 (45%), Gaps = 31/307 (10%)
Query: 136 EEKPLIEAVENAEKEKKAVEVAKNVDEEPEVEAVEKE--RPPAETLPE----EKPATETV 189
+EK +E +EN ++ + +NVDE ++E + E E + E EK E +
Sbjct: 1026 KEKISLENLENFDQGNNE-KPQENVDENEKLEKIYNENIEKSQENVDENEKLEKIYNENI 1084
Query: 190 ESAQEDKPAVEEVEKLPEE--KRAAEAVGSVQGVKPAETSAEEKPAAVVEEAEKLEKE-- 245
E +QE+ E++EK+ E +++ E V + ++ EK V+E EKLEK
Sbjct: 1085 EKSQENVDENEKLEKIYNENIEKSRENVDENEKLEKIYNENIEKSRENVDENEKLEKIYN 1144
Query: 246 ---EPAATNVNVQEVIEKVNNHIKEETDDNKAKDNTATEQVEEEIETENVEPISSTEDVG 302
E + NV+ E +EK+ N E K+++N + E+I EN+E S E+V
Sbjct: 1145 ENIEKSRENVDENEKLEKIYNENIE-----KSRENVDENEKLEKIYNENIE--KSRENV- 1196
Query: 303 RSADSKAMAIVDEMKAKPQEPSKVIVEEFAEKFEKDNHGTKPAEKEENISAGAEPTAIEI 362
+ K I +E K +E I++E +K + G + E +EN + EI
Sbjct: 1197 -DENEKLEKIYNENIEKSREEKSEILQEKTDKKLEKFDGKEKRENDENNQEKSFEEKKEI 1255
Query: 363 SPATNDE--AQADLKEVANDSPVSGIVEKIDDERRRDGTTVIETDIAELKEEKNVKMDQV 420
S DE Q +E+ + + + +D E+ +G +E A L E K +++
Sbjct: 1256 SNENQDEISQQNSQEEITENYEKT---KDVDQEKSSEGK--VEKSKAILSENNQEKSEKI 1310
Query: 421 MTEEKNE 427
+ EK +
Sbjct: 1311 L-HEKTD 1316
Score = 43.1 bits (100), Expect = 0.42, Method: Composition-based stats.
Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 34/325 (10%)
Query: 185 ATETVESAQEDKPAVEEVEKLPEEKRAAEAVGSVQGVKPAETSAEEKPAAVVEEAEKLEK 244
+ + + S +K +++EKL E + S++ ++ + EKP V+E EKLEK
Sbjct: 998 SVQYLMSKYTNKIEEKKLEKLENEIDQGKEKISLENLENFDQGNNEKPQENVDENEKLEK 1057
Query: 245 -----EEPAATNVNVQEVIEKVNNHIKEETDDNKAKDNTATEQVEEEIET--ENVEPISS 297
E + NV+ E +EK+ N E++ +N ++ + E IE ENV+
Sbjct: 1058 IYNENIEKSQENVDENEKLEKIYNENIEKSQENVDENEKLEKIYNENIEKSRENVDENEK 1117
Query: 298 TEDVGRSADSKAMAIVDEMKAKPQEPSKVIVEEFAEKFEKDNHGTKPAEKEENISAGAEP 357
E + K+ VDE ++ + + + E EK EK E I
Sbjct: 1118 LEKIYNENIEKSRENVDE--------NEKLEKIYNENIEKSRENVDENEKLEKIYN---- 1165
Query: 358 TAIEISPATNDEAQADLKEVANDSPVSGIVEKIDDERRRDGTTVIETDIAELKEEKNVKM 417
IE S DE + L+++ N++ + E +D+ + + + +I + +EEK+
Sbjct: 1166 ENIEKSRENVDENE-KLEKIYNEN-IEKSRENVDENEKLE--KIYNENIEKSREEKS--- 1218
Query: 418 DQVMTEEKNEKTESVIASERASSIAAQVTEKSLVEEQESRDVEMIKKKQDLPSAEN-ERD 476
+++ E+ ++K E E+ + EKS E++ E+ + QD S +N + +
Sbjct: 1219 -EILQEKTDKKLEKFDGKEKREN-DENNQEKSFEEKK-----EISNENQDEISQQNSQEE 1271
Query: 477 VAEATVDVKAEETNKKAETNLESTE 501
+ E K + K +E +E ++
Sbjct: 1272 ITENYEKTKDVDQEKSSEGKVEKSK 1296
>gi|359488809|ref|XP_002272929.2| PREDICTED: uncharacterized protein LOC100264483 [Vitis vinifera]
Length = 4565
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 523 SKEFSAKPPQKSSGNLLS----KVKQSLGKVKKAIVGKSPSSKTLQSEAKG 569
S++ + K K S N+LS KVK S+ KVKKAI GKS K S KG
Sbjct: 4508 SRDMNVKDGHKKSHNILSGVGSKVKHSIAKVKKAITGKSSHQK--HSSPKG 4556
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.294 0.117 0.292
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,635,362,194
Number of Sequences: 23463169
Number of extensions: 385371813
Number of successful extensions: 2765898
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4654
Number of HSP's successfully gapped in prelim test: 92485
Number of HSP's that attempted gapping in prelim test: 1824626
Number of HSP's gapped (non-prelim): 456920
length of query: 574
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 426
effective length of database: 8,886,646,355
effective search space: 3785711347230
effective search space used: 3785711347230
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 80 (35.4 bits)