BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041836
         (574 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
            (isolate 3D7) GN=PF11_0240 PE=3 SV=1
          Length = 5251

 Score = 45.4 bits (106), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 19/174 (10%)

Query: 77   NTVSEEPLEILSEKKVAIEASKETPQEKPGAEAGKEDAEETVPVGTVVQEEKSAVESLPE 136
            NT  E+ +EI +E + A+E  K T  EK    A +++ E+   +    ++EK+  ++  +
Sbjct: 4104 NTEDEKAIEINTEDEKAVE--KNTEDEK----AVEKNTEDEKAIEKNTEDEKAVEKNTED 4157

Query: 137  EKPLIEAVENAEKEKKAVEVAKNVDEEPEVEAVEKERPPAETLPEEKPATE-TVESAQED 195
            EK + +  E+ +  +K  E  K V++  E E   ++    E + EE    E  VE   ED
Sbjct: 4158 EKAVEKNTEDEKAIEKNTEDEKAVEKNTEDEKAVEQNTEDEKVVEENTEDEKAVEKNTED 4217

Query: 196  KPAVE---EVEKLPEEKRAAEAVGSVQGVKPAETSAEEKPAAVVEEAEKLEKEE 246
            + AVE   E EK+ EEK        ++  K  E  AEE+    +EE EK++ ++
Sbjct: 4218 EKAVEKNTEDEKVVEEK--------IEDEKGEEQKAEEENVG-IEEVEKVQIDD 4262



 Score = 39.3 bits (90), Expect = 0.084,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 13/126 (10%)

Query: 77   NTVSEEPLEILSEKKVAIEASKETPQEKPGAEAGKEDAEETVPVGTVVQEEKSAVESLPE 136
            NT  E+ +E  +E + AIE  K T  EK    A +++ E+   V    ++EK   E+  +
Sbjct: 4154 NTEDEKAVEKNTEDEKAIE--KNTEDEK----AVEKNTEDEKAVEQNTEDEKVVEENTED 4207

Query: 137  EKPLIEAVENAEKEKKAVEVAKNVDEEPEV-EAVEKERPPAETLPEEKPATETVESAQED 195
            EK    AVE   +++KAVE  KN ++E  V E +E E+   +   EE    E VE  Q D
Sbjct: 4208 EK----AVEKNTEDEKAVE--KNTEDEKVVEEKIEDEKGEEQKAEEENVGIEEVEKVQID 4261

Query: 196  KPAVEE 201
               V E
Sbjct: 4262 DYKVSE 4267


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.294    0.117    0.292 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,807,750
Number of Sequences: 539616
Number of extensions: 9795435
Number of successful extensions: 70814
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 4494
Number of HSP's that attempted gapping in prelim test: 43422
Number of HSP's gapped (non-prelim): 16634
length of query: 574
length of database: 191,569,459
effective HSP length: 123
effective length of query: 451
effective length of database: 125,196,691
effective search space: 56463707641
effective search space used: 56463707641
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 64 (29.3 bits)