Query 041836
Match_columns 574
No_of_seqs 9 out of 11
Neff 1.4
Searched_HMMs 29240
Date Mon Mar 25 19:13:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y6i_A Mg-chelatase cofactor G 6.2 73 0.0025 30.1 -1.3 11 58-68 133-143 (233)
2 1use_A VAsp, vasodilator-stimu 5.6 2.6E+02 0.0088 21.2 1.6 19 537-555 15-33 (45)
3 1z3x_A Putative cytidyltransfe 5.0 82 0.0028 29.9 -1.8 11 58-68 141-151 (238)
4 2kfe_A Meucin-24; alpha-helix, 4.4 4E+02 0.014 18.4 1.8 17 537-553 5-21 (26)
5 2vn6_B Endoglucanase A; cell a 4.2 5E+02 0.017 19.1 2.4 26 548-574 20-45 (64)
6 1daq_A Endoglucanase SS, CELS; 3.6 6.2E+02 0.021 19.0 2.5 27 548-574 22-48 (71)
7 3u5c_T 40S ribosomal protein S 3.3 4.6E+02 0.016 23.4 1.6 19 532-550 94-112 (144)
8 3iz6_S 40S ribosomal protein S 3.0 5.1E+02 0.017 23.2 1.6 20 531-550 95-114 (146)
9 2kwp_A Transcription elongatio 3.0 4.3E+02 0.015 22.2 1.1 36 537-572 22-57 (129)
10 3u9w_A Leukotriene A-4 hydrola 2.7 4.2E+02 0.014 26.4 0.8 14 62-75 141-154 (608)
No 1
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=6.18 E-value=73 Score=30.14 Aligned_cols=11 Identities=36% Similarity=0.857 Sum_probs=8.9
Q ss_pred cccCCCCCCCC
Q 041836 58 EKVDNFPCTDV 68 (574)
Q Consensus 58 ekvdnfpctdv 68 (574)
+.|+||||.|+
T Consensus 133 ~di~~fPc~DL 143 (233)
T 1y6i_A 133 TEVEKFPALDL 143 (233)
T ss_dssp HHHTTSCHHHH
T ss_pred HHHHhCCHHHH
Confidence 45889999986
No 2
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=5.60 E-value=2.6e+02 Score=21.20 Aligned_cols=19 Identities=47% Similarity=0.683 Sum_probs=15.7
Q ss_pred hhHHHHHHHHhhhhhhhcc
Q 041836 537 NLLSKVKQSLGKVKKAIVG 555 (574)
Q Consensus 537 NiisKVKQSLVKaKKAI~G 555 (574)
-||.-|++-|.|+|.-||.
T Consensus 15 EIL~E~RkElqK~K~EIIe 33 (45)
T 1use_A 15 ELLEEVKKELQKVKEEIIE 33 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5888888889999988874
No 3
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=5.00 E-value=82 Score=29.94 Aligned_cols=11 Identities=27% Similarity=0.697 Sum_probs=8.5
Q ss_pred cccCCCCCCCC
Q 041836 58 EKVDNFPCTDV 68 (574)
Q Consensus 58 ekvdnfpctdv 68 (574)
+.|+||||.|+
T Consensus 141 ~di~~fPc~DL 151 (238)
T 1z3x_A 141 TEVEQLPIPDL 151 (238)
T ss_dssp HHHHTSCHHHH
T ss_pred HHHHhCCHHHH
Confidence 45789999886
No 4
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=4.38 E-value=4e+02 Score=18.35 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=14.4
Q ss_pred hhHHHHHHHHhhhhhhh
Q 041836 537 NLLSKVKQSLGKVKKAI 553 (574)
Q Consensus 537 NiisKVKQSLVKaKKAI 553 (574)
-|+.+||.-|..||--|
T Consensus 5 ei~~kiK~kl~~akdK~ 21 (26)
T 2kfe_A 5 EFMSNLKEKLSGVKEKM 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 48899999999998765
No 5
>2vn6_B Endoglucanase A; cell adhesion, carbohydrate metabolism, polysaccharide degradation, hydrolase, glycosidase, cellulose degradation; 1.49A {Clostridium cellulolyticum} PDB: 2vn5_B
Probab=4.21 E-value=5e+02 Score=19.08 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=16.3
Q ss_pred hhhhhhccCCCCCccccccccCCCCCC
Q 041836 548 KVKKAIVGKSPSSKTLQSEAKGDENIN 574 (574)
Q Consensus 548 KaKKAI~GKSPssKtlssdaKGDiKVN 574 (574)
..|+.|.|..+..- ...|.-||-+||
T Consensus 20 ~l~~yllg~~~~~~-~~aDvn~DG~in 45 (64)
T 2vn6_B 20 GLKKYIMAADHAYV-KNLDVNLDNEVN 45 (64)
T ss_dssp HHHHHHHSTTCCCC-GGGCTTCSSCCS
T ss_pred HHHHHHccCCccch-hhhcccCCCccc
Confidence 34566677665443 566777777665
No 6
>1daq_A Endoglucanase SS, CELS; cellulose degradation, cellulosome, calcium-binding, hydrolase; NMR {Clostridium thermocellum} SCOP: a.139.1.1 PDB: 1dav_A
Probab=3.64 E-value=6.2e+02 Score=18.99 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=15.5
Q ss_pred hhhhhhccCCCCCccccccccCCCCCC
Q 041836 548 KVKKAIVGKSPSSKTLQSEAKGDENIN 574 (574)
Q Consensus 548 KaKKAI~GKSPssKtlssdaKGDiKVN 574 (574)
..|+.|.|..+..-....|..||-+||
T Consensus 22 ~l~~yllg~~~~~~~~~aDvn~DG~in 48 (71)
T 1daq_A 22 ALKRYVLRSGISINTDNADLNEDGRVN 48 (71)
T ss_dssp HHHHHHHCSCSCCCGGGTCSSSSSSCS
T ss_pred HHHHHHcCCCccccchhhcccCCCccc
Confidence 345566666554333456777776665
No 7
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=3.26 E-value=4.6e+02 Score=23.36 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=15.6
Q ss_pred CcccchhHHHHHHHHhhhh
Q 041836 532 QKSSGNLLSKVKQSLGKVK 550 (574)
Q Consensus 532 QK~SNNiisKVKQSLVKaK 550 (574)
.+.|.+||.++-|+|-+++
T Consensus 94 ~~asg~iiR~~LQqLE~~g 112 (144)
T 3u5c_T 94 IDASGSINRKVLQALEKIG 112 (144)
T ss_dssp CCCCHHHHHHHHHHHHHTT
T ss_pred cccCcHHHHHHHHHHHHCC
Confidence 4678889999999988876
No 8
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=3.00 E-value=5.1e+02 Score=23.16 Aligned_cols=20 Identities=35% Similarity=0.328 Sum_probs=17.1
Q ss_pred CCcccchhHHHHHHHHhhhh
Q 041836 531 PQKSSGNLLSKVKQSLGKVK 550 (574)
Q Consensus 531 ~QK~SNNiisKVKQSLVKaK 550 (574)
..+.|.+||.++-|+|.+++
T Consensus 95 ~~~asg~iiR~~LQqLE~~g 114 (146)
T 3iz6_S 95 FCKSSGAISRNILQQLQKMG 114 (146)
T ss_dssp CCCCCHHHHHHHHHHHHHHT
T ss_pred ccCCCcHHHHHHHHHHHHCC
Confidence 34789999999999999876
No 9
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=2.97 E-value=4.3e+02 Score=22.23 Aligned_cols=36 Identities=11% Similarity=0.199 Sum_probs=23.5
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCccccccccCCCC
Q 041836 537 NLLSKVKQSLGKVKKAIVGKSPSSKTLQSEAKGDEN 572 (574)
Q Consensus 537 NiisKVKQSLVKaKKAI~GKSPssKtlssdaKGDiK 572 (574)
-|+.-+.++|.+|-|.-.|....-.---....|+++
T Consensus 22 ~v~eaie~AL~~A~kk~~g~~~~~~V~id~~tG~~~ 57 (129)
T 2kwp_A 22 KIFEALESALATATKKKYEQEIDVRVQIDRKSGDFD 57 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCCEEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCccceEEEEECCCCeEE
Confidence 478899999999988888865433322233345544
No 10
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=2.69 E-value=4.2e+02 Score=26.38 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=10.1
Q ss_pred CCCCCCCCcccccC
Q 041836 62 NFPCTDVPAEVNNV 75 (574)
Q Consensus 62 nfpctdvpaevnnv 75 (574)
-|||.|-|+.--..
T Consensus 141 ~fPc~D~P~~Katf 154 (608)
T 3u9w_A 141 ILPCQDTPSVKLTY 154 (608)
T ss_dssp TSCBCCSTTCCEEE
T ss_pred EEEecCccceeEEE
Confidence 59999999754433
Done!