BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041841
         (216 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CT7|A Chain A, Solution Structure Of The Ibr Domain Of The Ring Finger
           Protein 31 Protein
          Length = 86

 Score = 30.4 bits (67), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 123 LCEGVINGAEKF-YCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKVPW---HAGMR 178
           L EGV+    KF +C    CS   I +  +   E+  P C + FC +CK  W   H G  
Sbjct: 14  LTEGVLMRDPKFLWCA--QCSFGFIYE--REQLEATCPQCHQTFCVRCKRQWEEQHRGRS 69

Query: 179 CEKFRKLNK 187
           CE F+   +
Sbjct: 70  CEDFQNWKR 78


>pdb|1WIM|A Chain A, Solution Structure Of The Ring Finger Domain Of The Human
           Ubcm4-Interacting Protein 4
          Length = 94

 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 66  ICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESI-TSIRCP 109
           +C+      ++ +I  C   +CT C+ +YV+  ++E + T+I CP
Sbjct: 10  LCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCP 54


>pdb|2VTY|A Chain A, Vaccinia Virus Anti-Apoptotic F1l Is A Novel Bcl-2-Like
           Domain Swapped Dimer
          Length = 182

 Score = 27.7 bits (60), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 8/41 (19%)

Query: 55  THFGKRKRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYV 95
           T  G+R      CM P  T ++F++   S++ C DC V Y+
Sbjct: 146 TELGRR------CMNPVKTIKMFTL--LSHTICDDCFVDYI 178


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,209,121
Number of Sequences: 62578
Number of extensions: 225758
Number of successful extensions: 416
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 12
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)