Query 041841
Match_columns 216
No_of_seqs 230 out of 1166
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 19:17:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ct7_A Ring finger protein 31; 99.6 3E-17 1E-21 114.7 -2.5 73 112-188 3-79 (86)
2 1wim_A KIAA0161 protein; ring 99.6 2.9E-15 9.7E-20 106.1 5.8 71 61-131 5-93 (94)
3 2jmo_A Parkin; IBR, E3 ligase, 99.5 1.4E-16 4.7E-21 109.7 -3.8 69 110-181 2-75 (80)
4 4ap4_A E3 ubiquitin ligase RNF 98.7 4.6E-09 1.6E-13 77.8 1.8 97 61-171 7-107 (133)
5 3hcs_A TNF receptor-associated 98.6 7.3E-09 2.5E-13 80.5 2.0 92 61-165 18-120 (170)
6 2ct2_A Tripartite motif protei 98.3 1.3E-06 4.4E-11 59.9 5.8 45 61-109 15-60 (88)
7 2ecm_A Ring finger and CHY zin 98.3 9.5E-07 3.3E-11 55.2 4.4 38 61-98 5-43 (55)
8 2kiz_A E3 ubiquitin-protein li 98.2 2.9E-06 9.9E-11 55.6 5.4 37 61-97 14-50 (69)
9 2ysj_A Tripartite motif-contai 98.2 2E-06 6.9E-11 55.4 4.5 42 61-109 20-61 (63)
10 2ecv_A Tripartite motif-contai 98.1 4.4E-06 1.5E-10 56.6 5.6 45 61-109 19-63 (85)
11 1rmd_A RAG1; V(D)J recombinati 98.1 3.7E-06 1.3E-10 60.9 5.4 73 61-148 23-103 (116)
12 3hct_A TNF receptor-associated 98.1 3.6E-06 1.2E-10 61.3 4.5 76 61-149 18-98 (118)
13 1jm7_A BRCA1, breast cancer ty 98.1 3E-06 1E-10 60.8 4.0 42 61-109 21-62 (112)
14 2ep4_A Ring finger protein 24; 98.0 2.4E-06 8.4E-11 56.7 3.1 37 61-97 15-51 (74)
15 1x4j_A Ring finger protein 38; 98.0 3E-06 1E-10 56.5 3.5 37 61-97 23-59 (75)
16 1iym_A EL5; ring-H2 finger, ub 98.0 2.8E-06 9.5E-11 53.1 2.8 37 61-97 5-42 (55)
17 3ng2_A RNF4, snurf, ring finge 98.0 1.8E-06 6.1E-11 56.8 2.0 37 61-97 10-50 (71)
18 2ect_A Ring finger protein 126 98.0 3.8E-06 1.3E-10 56.4 3.5 36 61-96 15-50 (78)
19 2ecw_A Tripartite motif-contai 98.0 1E-05 3.6E-10 54.7 5.8 45 61-109 19-63 (85)
20 1e4u_A Transcriptional repress 98.0 5.2E-06 1.8E-10 56.2 3.7 43 61-109 11-54 (78)
21 2ea6_A Ring finger protein 4; 98.0 3.8E-06 1.3E-10 54.7 2.9 37 61-97 15-55 (69)
22 2egp_A Tripartite motif-contai 98.0 1.1E-06 3.6E-11 59.2 -0.0 46 61-109 12-57 (79)
23 2xeu_A Ring finger protein 4; 97.9 2.4E-06 8.2E-11 54.9 1.6 37 61-97 3-43 (64)
24 2ysl_A Tripartite motif-contai 97.9 5.3E-06 1.8E-10 54.8 3.1 42 61-109 20-61 (73)
25 2ecj_A Tripartite motif-contai 97.9 6.7E-06 2.3E-10 51.7 3.1 33 61-96 15-47 (58)
26 2csy_A Zinc finger protein 183 97.8 2.3E-05 7.8E-10 53.0 5.2 39 61-109 15-53 (81)
27 2djb_A Polycomb group ring fin 97.8 1.3E-05 4.6E-10 52.9 3.9 35 61-97 15-49 (72)
28 2l0b_A E3 ubiquitin-protein li 97.8 1.1E-05 3.9E-10 55.9 3.3 36 61-96 40-75 (91)
29 1g25_A CDK-activating kinase a 97.8 1.1E-05 3.9E-10 52.1 3.0 43 61-109 3-47 (65)
30 3knv_A TNF receptor-associated 97.8 9.8E-06 3.4E-10 61.0 3.0 78 61-148 31-119 (141)
31 2ecy_A TNF receptor-associated 97.8 9.2E-06 3.1E-10 52.7 2.5 33 61-96 15-47 (66)
32 1t1h_A Gspef-atpub14, armadill 97.8 4.1E-05 1.4E-09 51.2 5.6 40 61-109 8-47 (78)
33 3lrq_A E3 ubiquitin-protein li 97.8 2.9E-05 1E-09 54.7 5.1 41 61-109 22-62 (100)
34 1v87_A Deltex protein 2; ring- 97.8 1.3E-05 4.6E-10 57.6 3.4 47 61-109 25-86 (114)
35 2d8t_A Dactylidin, ring finger 97.8 8.6E-06 3E-10 53.7 1.9 39 61-109 15-53 (71)
36 2yur_A Retinoblastoma-binding 97.7 1.9E-05 6.5E-10 52.5 3.2 41 61-109 15-56 (74)
37 2ecn_A Ring finger protein 141 97.7 1.3E-05 4.4E-10 52.5 2.1 32 61-96 15-46 (70)
38 3fl2_A E3 ubiquitin-protein li 97.7 2.7E-05 9.3E-10 57.0 4.0 40 61-109 52-91 (124)
39 1chc_A Equine herpes virus-1 r 97.7 2.7E-05 9.4E-10 50.6 3.4 35 61-97 5-39 (68)
40 3ztg_A E3 ubiquitin-protein li 97.7 3E-05 1E-09 53.6 3.4 41 61-109 13-54 (92)
41 4ayc_A E3 ubiquitin-protein li 97.6 3.1E-05 1.1E-09 57.8 2.6 38 62-109 54-91 (138)
42 2ckl_A Polycomb group ring fin 97.6 3E-05 1E-09 55.3 2.4 40 61-109 15-54 (108)
43 1z6u_A NP95-like ring finger p 97.5 8.2E-05 2.8E-09 56.5 3.7 40 61-109 78-117 (150)
44 1bor_A Transcription factor PM 97.4 3.1E-05 1E-09 48.7 0.9 30 61-93 6-35 (56)
45 2y43_A E3 ubiquitin-protein li 97.4 6.9E-05 2.4E-09 52.5 2.8 40 61-109 22-61 (99)
46 2ecl_A Ring-box protein 2; RNF 97.4 7.4E-05 2.5E-09 50.6 2.2 36 62-97 16-63 (81)
47 2ckl_B Ubiquitin ligase protei 97.3 0.00015 5.3E-09 55.5 3.9 41 61-109 54-94 (165)
48 1jm7_B BARD1, BRCA1-associated 97.3 0.00012 4E-09 53.0 2.4 34 61-96 22-55 (117)
49 2yu4_A E3 SUMO-protein ligase 97.2 0.0006 2.1E-08 47.4 5.1 46 61-109 7-52 (94)
50 3htk_C E3 SUMO-protein ligase 97.1 0.00029 1E-08 58.0 3.6 42 61-109 181-222 (267)
51 3l11_A E3 ubiquitin-protein li 97.0 0.00011 3.9E-09 52.8 -0.1 40 61-109 15-54 (115)
52 4ic3_A E3 ubiquitin-protein li 97.0 0.00025 8.6E-09 47.1 1.6 31 61-94 24-55 (74)
53 2kr4_A Ubiquitin conjugation f 96.9 0.00084 2.9E-08 45.8 4.1 34 61-97 14-47 (85)
54 2d8s_A Cellular modulator of i 96.8 0.0016 5.4E-08 44.0 4.8 43 61-109 15-62 (80)
55 2ecg_A Baculoviral IAP repeat- 96.8 0.00072 2.5E-08 44.8 2.8 29 61-92 25-54 (75)
56 3dpl_R Ring-box protein 1; ubi 96.6 0.0014 4.7E-08 46.7 3.5 37 61-97 37-88 (106)
57 1wd2_A Ariadne-1 protein homol 96.6 0.0016 5.3E-08 41.6 3.0 38 132-173 5-44 (60)
58 2y1n_A E3 ubiquitin-protein li 96.5 0.0015 5.3E-08 56.7 3.9 33 62-97 333-365 (389)
59 2ea5_A Cell growth regulator w 96.5 0.0026 8.8E-08 41.5 4.0 29 61-92 15-44 (68)
60 4ap4_A E3 ubiquitin ligase RNF 96.5 0.0011 3.7E-08 48.3 2.3 37 61-97 72-112 (133)
61 2vje_A E3 ubiquitin-protein li 96.4 0.0014 4.8E-08 42.1 2.1 35 61-96 8-43 (64)
62 2kre_A Ubiquitin conjugation f 96.3 0.0034 1.2E-07 44.1 3.7 33 61-96 29-61 (100)
63 2yho_A E3 ubiquitin-protein li 96.0 0.0033 1.1E-07 42.2 2.5 31 61-94 18-49 (79)
64 1wgm_A Ubiquitin conjugation f 96.0 0.0039 1.3E-07 43.6 2.9 34 61-97 22-56 (98)
65 2vje_B MDM4 protein; proto-onc 95.9 0.0024 8E-08 40.9 1.4 35 61-96 7-42 (63)
66 2c2l_A CHIP, carboxy terminus 95.9 0.0046 1.6E-07 50.6 3.3 34 61-97 208-241 (281)
67 4a0k_B E3 ubiquitin-protein li 95.7 0.0017 6E-08 47.1 0.0 36 62-97 49-99 (117)
68 2f42_A STIP1 homology and U-bo 95.2 0.014 4.7E-07 45.4 3.4 34 61-97 106-139 (179)
69 2ct0_A Non-SMC element 1 homol 95.0 0.0089 3.1E-07 39.7 1.7 36 60-97 14-49 (74)
70 3t6p_A Baculoviral IAP repeat- 94.3 0.0092 3.1E-07 51.2 0.4 31 61-94 295-326 (345)
71 3k1l_B Fancl; UBC, ring, RWD, 94.1 0.03 1E-06 47.9 3.3 41 60-100 307-352 (381)
72 2jun_A Midline-1; B-BOX, TRIM, 94.0 0.035 1.2E-06 38.5 2.9 90 61-178 3-95 (101)
73 2cs3_A Protein C14ORF4, MY039 90.2 0.85 2.9E-05 30.4 5.7 47 61-109 15-62 (93)
74 2bay_A PRE-mRNA splicing facto 90.1 0.23 8E-06 31.2 3.0 34 62-97 4-37 (61)
75 3vk6_A E3 ubiquitin-protein li 87.4 0.32 1.1E-05 33.9 2.4 32 64-97 4-35 (101)
76 1vyx_A ORF K3, K3RING; zinc-bi 87.0 0.53 1.8E-05 29.5 3.1 35 61-98 6-45 (60)
77 2d8v_A Zinc finger FYVE domain 82.5 1.2 4E-05 28.5 3.1 32 61-96 8-40 (67)
78 4ayb_P DNA-directed RNA polyme 75.6 1.5 5.1E-05 26.0 1.8 28 140-167 8-35 (48)
79 3qt1_I DNA-directed RNA polyme 75.2 2 6.8E-05 31.5 2.9 33 131-165 22-56 (133)
80 3h0g_I DNA-directed RNA polyme 72.3 2.7 9.2E-05 29.7 2.9 31 133-165 4-36 (113)
81 3j20_Y 30S ribosomal protein S 71.7 1.7 5.9E-05 26.1 1.5 27 133-165 19-47 (50)
82 1pft_A TFIIB, PFTFIIBN; N-term 67.3 4.2 0.00014 24.0 2.6 29 133-165 5-34 (50)
83 3u5c_f 40S ribosomal protein S 66.9 2.4 8.3E-05 31.6 1.8 34 133-168 118-151 (152)
84 1twf_I B12.6, DNA-directed RNA 65.9 2.1 7.2E-05 30.8 1.2 32 132-165 3-36 (122)
85 3nw0_A Non-structural maintena 62.6 3.4 0.00011 33.2 2.0 35 61-97 180-214 (238)
86 2k4x_A 30S ribosomal protein S 60.8 3.7 0.00013 25.2 1.5 29 133-165 18-46 (55)
87 3fyb_A Protein of unknown func 55.7 6.3 0.00022 27.2 2.1 18 85-102 41-59 (104)
88 2o35_A Hypothetical protein DU 55.0 7.2 0.00025 26.9 2.3 17 85-101 42-58 (105)
89 1vq8_Z 50S ribosomal protein L 54.9 5.3 0.00018 26.7 1.6 31 132-166 26-56 (83)
90 1wfe_A Riken cDNA 2310008M20 p 54.5 8.6 0.00029 25.8 2.6 41 133-182 25-65 (86)
91 3iz6_X 40S ribosomal protein S 52.7 7 0.00024 26.2 1.9 43 134-179 37-79 (86)
92 1z60_A TFIIH basal transcripti 52.7 5.5 0.00019 24.8 1.3 30 62-91 16-45 (59)
93 2yw8_A RUN and FYVE domain-con 51.2 12 0.0004 24.6 2.9 38 128-171 14-51 (82)
94 1zbd_B Rabphilin-3A; G protein 50.7 6.9 0.00023 28.5 1.8 32 61-92 55-88 (134)
95 1x4v_A Hypothetical protein LO 49.2 6.4 0.00022 24.9 1.2 40 133-181 12-51 (63)
96 1gh9_A 8.3 kDa protein (gene M 48.2 6.8 0.00023 25.4 1.2 26 134-165 5-30 (71)
97 2ffw_A Midline-1; B-BOX, ring 48.1 21 0.00071 23.1 3.7 36 61-96 30-66 (78)
98 2ko5_A Ring finger protein Z; 47.3 5 0.00017 27.5 0.5 32 60-96 27-59 (99)
99 1x4u_A Zinc finger, FYVE domai 47.1 15 0.00053 24.1 3.0 34 132-171 13-46 (84)
100 1joc_A EEA1, early endosomal a 45.9 16 0.00053 26.2 3.0 33 133-171 69-101 (125)
101 1z2q_A LM5-1; membrane protein 44.6 15 0.00052 24.2 2.6 34 133-172 21-54 (84)
102 2kdx_A HYPA, hydrogenase/ureas 42.8 25 0.00086 24.6 3.7 47 111-163 41-98 (119)
103 1f62_A Transcription factor WS 42.6 23 0.00077 20.7 2.9 31 63-93 2-32 (51)
104 1qxf_A GR2, 30S ribosomal prot 42.6 18 0.0006 23.0 2.5 35 133-170 7-41 (66)
105 3a1b_A DNA (cytosine-5)-methyl 39.7 17 0.00058 27.3 2.4 34 61-97 79-114 (159)
106 3j20_W 30S ribosomal protein S 39.1 23 0.00077 22.3 2.6 32 134-168 16-47 (63)
107 2jrp_A Putative cytoplasmic pr 39.0 25 0.00087 23.2 3.0 12 135-148 4-15 (81)
108 2gmg_A Hypothetical protein PF 38.5 12 0.0004 26.1 1.3 25 135-164 69-93 (105)
109 2a20_A Regulating synaptic mem 36.8 7.7 0.00026 24.1 0.1 21 155-175 25-45 (62)
110 3t7l_A Zinc finger FYVE domain 36.7 28 0.00095 23.2 3.0 34 61-94 20-54 (90)
111 1fre_A Nuclear factor XNF7; zi 36.2 22 0.00077 19.6 2.1 25 154-178 13-38 (42)
112 2xzm_6 RPS27E; ribosome, trans 35.7 25 0.00087 23.2 2.5 35 134-171 33-67 (81)
113 2zet_C Melanophilin; complex, 35.5 17 0.00057 27.1 1.8 31 61-91 68-100 (153)
114 1twf_L ABC10-alpha, DNA-direct 35.2 20 0.0007 22.9 2.0 26 134-164 29-54 (70)
115 3a43_A HYPD, hydrogenase nicke 35.2 36 0.0012 24.6 3.6 36 111-148 39-83 (139)
116 1vfy_A Phosphatidylinositol-3- 35.1 21 0.00072 22.8 2.1 31 135-171 13-43 (73)
117 1wys_A Riken cDNA 2310008M20 p 34.4 34 0.0012 22.2 3.0 46 133-187 14-59 (75)
118 1dsq_A Nucleic acid binding pr 33.6 17 0.00057 18.3 1.1 18 164-181 3-20 (26)
119 3pwf_A Rubrerythrin; non heme 33.5 37 0.0013 25.6 3.5 21 136-163 141-161 (170)
120 1weo_A Cellulose synthase, cat 32.7 51 0.0017 22.2 3.7 38 61-102 16-57 (93)
121 2pv0_B DNA (cytosine-5)-methyl 31.8 28 0.00096 29.9 2.9 32 61-95 93-126 (386)
122 2kvh_A Zinc finger and BTB dom 31.6 18 0.00063 16.8 1.1 10 156-165 4-13 (27)
123 1wfk_A Zinc finger, FYVE domai 30.2 40 0.0014 22.4 2.9 33 133-171 9-41 (88)
124 1dvp_A HRS, hepatocyte growth 29.8 26 0.00089 27.3 2.2 19 153-171 175-193 (220)
125 2be7_D Aspartate carbamoyltran 29.7 19 0.00065 26.8 1.2 33 133-165 105-144 (153)
126 2e72_A POGO transposable eleme 29.2 18 0.00061 21.5 0.8 12 204-215 10-21 (49)
127 2kvf_A Zinc finger and BTB dom 29.2 21 0.00072 16.6 1.1 11 156-166 4-14 (28)
128 3u5c_b RP61, YS20, 40S ribosom 28.9 31 0.001 22.9 2.0 36 134-172 35-70 (82)
129 2pk7_A Uncharacterized protein 28.5 29 0.00099 22.1 1.8 29 133-165 8-36 (69)
130 3v2d_5 50S ribosomal protein L 28.1 31 0.0011 21.4 1.9 26 129-163 26-51 (60)
131 1dl6_A Transcription factor II 27.7 48 0.0016 20.2 2.7 28 133-164 11-39 (58)
132 2yvr_A Transcription intermedi 27.6 11 0.00039 21.8 -0.2 26 154-179 17-42 (50)
133 2lbm_A Transcriptional regulat 27.6 78 0.0027 23.1 4.3 33 61-96 63-95 (142)
134 2js4_A UPF0434 protein BB2007; 27.5 29 0.00099 22.2 1.7 29 133-165 8-36 (70)
135 3h0g_L DNA-directed RNA polyme 27.4 34 0.0012 21.5 1.9 27 134-165 22-48 (63)
136 1y02_A CARP2, FYVE-ring finger 27.2 17 0.00057 25.9 0.6 34 134-173 20-53 (120)
137 2i5o_A DNA polymerase ETA; zin 27.1 22 0.00074 20.1 0.9 13 204-216 7-19 (39)
138 2jr6_A UPF0434 protein NMA0874 26.6 29 0.001 22.0 1.6 29 133-165 8-36 (68)
139 2yww_A Aspartate carbamoyltran 26.6 29 0.001 25.7 1.8 32 133-165 105-143 (149)
140 3zyq_A Hepatocyte growth facto 26.4 32 0.0011 27.0 2.2 20 153-172 178-197 (226)
141 1rik_A E6APC1 peptide; E6-bind 26.2 24 0.00082 16.5 1.0 11 156-166 3-13 (29)
142 2zjr_Z 50S ribosomal protein L 26.2 40 0.0014 20.8 2.1 26 129-163 26-51 (60)
143 2hf1_A Tetraacyldisaccharide-1 26.1 29 0.00099 22.0 1.5 29 133-165 8-36 (68)
144 3ql9_A Transcriptional regulat 25.8 69 0.0024 23.0 3.7 32 61-95 57-88 (129)
145 2m0d_A Zinc finger and BTB dom 25.8 25 0.00086 16.4 1.0 11 156-166 4-14 (30)
146 1wg2_A Zinc finger (AN1-like) 25.6 33 0.0011 21.6 1.7 36 134-180 16-51 (64)
147 2lvu_A Zinc finger and BTB dom 31.4 15 0.0005 17.0 0.0 13 156-168 3-15 (26)
148 2kvg_A Zinc finger and BTB dom 25.3 21 0.00072 16.7 0.6 10 156-165 4-13 (27)
149 1ard_A Yeast transcription fac 25.0 23 0.00079 16.5 0.7 10 156-165 3-12 (29)
150 2k16_A Transcription initiatio 24.0 54 0.0019 20.7 2.6 31 62-92 19-49 (75)
151 4fyy_B Aspartate carbamoyltran 23.6 38 0.0013 25.2 2.0 33 133-165 106-145 (153)
152 2m0e_A Zinc finger and BTB dom 23.6 25 0.00084 16.3 0.7 11 156-166 3-13 (29)
153 2akl_A PHNA-like protein PA012 23.4 29 0.00098 25.2 1.2 29 132-165 26-54 (138)
154 1wfh_A Zinc finger (AN1-like) 23.2 39 0.0013 21.2 1.7 36 134-180 16-51 (64)
155 2m0f_A Zinc finger and BTB dom 23.1 28 0.00097 16.1 0.9 11 156-166 3-13 (29)
156 1nc8_A Nucleocapsid protein; H 23.1 21 0.00073 18.3 0.4 18 164-181 7-24 (29)
157 3na7_A HP0958; flagellar bioge 22.6 40 0.0014 26.9 2.1 54 110-165 172-232 (256)
158 1paa_A Yeast transcription fac 22.4 26 0.0009 16.5 0.7 11 156-166 3-13 (30)
159 2elx_A Zinc finger protein 406 22.4 35 0.0012 16.8 1.2 13 154-166 6-18 (35)
160 1znf_A 31ST zinc finger from X 22.2 27 0.00093 15.9 0.7 10 157-166 3-12 (27)
161 1p7a_A BF3, BKLF, kruppel-like 22.1 34 0.0011 17.2 1.1 13 154-166 10-22 (37)
162 3v43_A Histone acetyltransfera 21.7 1.2E+02 0.0042 20.7 4.3 32 61-92 5-42 (112)
163 2els_A Zinc finger protein 406 21.7 38 0.0013 16.9 1.3 13 154-166 8-20 (36)
164 2jny_A Uncharacterized BCR; st 21.5 41 0.0014 21.3 1.5 29 133-165 10-38 (67)
165 2bl6_A Nucleocapsid protein P1 21.4 43 0.0015 18.1 1.4 17 165-181 2-18 (37)
166 1klr_A Zinc finger Y-chromosom 21.3 30 0.001 16.1 0.7 9 157-165 4-12 (30)
167 2jne_A Hypothetical protein YF 21.2 61 0.0021 22.2 2.4 33 134-172 33-70 (101)
168 1pg5_B Aspartate carbamoyltran 20.9 52 0.0018 24.8 2.2 32 133-165 114-153 (168)
169 2did_A Tripartite motif protei 20.5 26 0.00087 20.5 0.4 25 154-178 18-43 (53)
170 2elm_A Zinc finger protein 406 20.5 40 0.0014 17.2 1.2 13 154-166 8-20 (37)
171 2ysm_A Myeloid/lymphoid or mix 20.5 55 0.0019 22.4 2.2 32 61-92 7-38 (111)
172 2elp_A Zinc finger protein 406 20.4 41 0.0014 16.9 1.2 13 154-166 8-20 (37)
173 1srk_A Zinc finger protein ZFP 20.4 42 0.0014 16.6 1.3 14 154-167 6-19 (35)
174 3ddt_A E3 ubiquitin-protein li 20.3 19 0.00065 20.7 -0.3 25 154-178 17-42 (48)
175 2csv_A Tripartite motif protei 20.3 20 0.00068 22.6 -0.2 29 154-182 28-56 (72)
176 3nyb_B Protein AIR2; polya RNA 20.3 52 0.0018 21.6 1.9 20 163-182 5-24 (83)
177 2elt_A Zinc finger protein 406 20.2 42 0.0014 16.6 1.2 13 154-166 8-20 (36)
178 2elq_A Zinc finger protein 406 20.0 42 0.0014 16.7 1.2 13 154-166 8-20 (36)
179 2lvr_A Zinc finger and BTB dom 25.4 22 0.00076 16.7 0.0 13 156-168 4-16 (30)
No 1
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.59 E-value=3e-17 Score=114.67 Aligned_cols=73 Identities=29% Similarity=0.658 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHhhhcC-CCCcccCcCCCCceeecCCCCCCCceeCCCCchhccccCCCCC---CCCCChHhHHHhcc
Q 041841 112 PKEVSDRWGNALCEGVING-AEKFYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKVPW---HAGMRCEKFRKLNK 187 (216)
Q Consensus 112 ~~~~~~~y~~~~~~~~v~~-~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~---H~~~~C~~~~~~~~ 187 (216)
+++++++|.+++.+.+|.. +.++||| +|++++..+.. ...+.|+.|++.||+.|+.+| |.|++|+++++|.+
T Consensus 3 s~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~~--~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~ 78 (86)
T 2ct7_A 3 SGSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYERE--QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKR 78 (86)
T ss_dssp CCCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCCS--CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecCC--CCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHH
Confidence 4567889999999999865 5578999 99998877643 566999999999999999999 99999999999987
Q ss_pred c
Q 041841 188 N 188 (216)
Q Consensus 188 ~ 188 (216)
+
T Consensus 79 ~ 79 (86)
T 2ct7_A 79 M 79 (86)
T ss_dssp H
T ss_pred h
Confidence 5
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.56 E-value=2.9e-15 Score=106.14 Aligned_cols=71 Identities=24% Similarity=0.562 Sum_probs=61.6
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCC-cccccc-----------------CCCHHHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESI-TSIRCP-----------------IVPKEVSDRWGNA 122 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~-~~i~Cp-----------------~l~~~~~~~y~~~ 122 (216)
..+|+||+++++..+++.+..|+|.||++||+.|++.+|.+|. .+|+|| +++++++++|.++
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~~~ 84 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYKKL 84 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHHHH
Confidence 5689999999988787777789999999999999999999874 579998 3578889999999
Q ss_pred HHHhhhcCC
Q 041841 123 LCEGVINGA 131 (216)
Q Consensus 123 ~~~~~v~~~ 131 (216)
+.+.+++++
T Consensus 85 ~~~~~v~~~ 93 (94)
T 1wim_A 85 QFERSGPSS 93 (94)
T ss_dssp HHHSSCSSC
T ss_pred HHHhhhccC
Confidence 999888654
No 3
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-16 Score=109.71 Aligned_cols=69 Identities=22% Similarity=0.438 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHhhhcCCCCcccCcCCCCceeecCCCCCCCceeCC-----CCchhccccCCCCCCCCCChHh
Q 041841 110 IVPKEVSDRWGNALCEGVINGAEKFYCPFKDCSALLINDGLKNMKESKRP-----YCKRMFCAQCKVPWHAGMRCEK 181 (216)
Q Consensus 110 ~l~~~~~~~y~~~~~~~~v~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~-----~C~~~fC~~C~~~~H~~~~C~~ 181 (216)
+|+++++++|++++++.+|..+.++|||+|+|++++..+. ....+.|+ .||+.||+.|+.+||. .+|.+
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~C~~~v~~~~--~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEP--DQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSSCCCCCCCCS--CTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCCCCcccEECC--CCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 5788899999999999999766699999999999997764 35679998 8999999999999999 99976
No 4
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.68 E-value=4.6e-09 Score=77.77 Aligned_cols=97 Identities=22% Similarity=0.434 Sum_probs=55.1
Q ss_pred CCCCcccccCCCCC----CceeeCCCCCccchHHHHHHHHHHhhcCCccccccCCCHHHHHHHHHHHHHhhhcCCCCccc
Q 041841 61 KRPFSICMEPKSTN----ELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCPIVPKEVSDRWGNALCEGVINGAEKFYC 136 (216)
Q Consensus 61 ~~~C~IC~~~~~~~----~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp~l~~~~~~~y~~~~~~~~v~~~~~~~C 136 (216)
..+|+||++.+... .....+.|||.||.+|+.+|+..+ ..||+-...+.. ..+...++ ..+...|
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~Cr~~~~~---~~l~~l~i-~~~~~~C 75 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCPTCRKKINH---KRYHPIYI-GSGTVSC 75 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-------SBCTTTCCBCTT---TCEEECBC-SSSSCBC
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-------CCCCCCCCcCcc---cccccccc-CCCCCCC
Confidence 57899999987432 333457999999999999998632 378821110000 00000011 2345678
Q ss_pred CcCCCCceeecCCCCCCCceeCCCCchhccccCCC
Q 041841 137 PFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKV 171 (216)
Q Consensus 137 p~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 171 (216)
| -|...+..........+.. .||..||..|-.
T Consensus 76 ~--iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~ 107 (133)
T 4ap4_A 76 P--ICMDGYSEIVQNGRLIVST-ECGHVFCSQCLR 107 (133)
T ss_dssp T--TTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHH
T ss_pred C--CCCCccccccccCcceEeC-CCCChhhHHHHH
Confidence 7 6766653321111122344 499999998843
No 5
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.64 E-value=7.3e-09 Score=80.52 Aligned_cols=92 Identities=21% Similarity=0.450 Sum_probs=57.3
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc-----CCCHHHHHHHHHHHHHhhhcCCCCcc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP-----IVPKEVSDRWGNALCEGVINGAEKFY 135 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp-----~l~~~~~~~y~~~~~~~~v~~~~~~~ 135 (216)
...|+||++.+... + .+.|||.||..|+..++..+- .+|| +...+++ ....++..+. .-.++
T Consensus 18 ~~~C~IC~~~~~~p--v-~~~CgH~fC~~Ci~~~~~~~~------~~CP~Cr~~~~~~~~~---~~~~~~~~i~-~l~v~ 84 (170)
T 3hcs_A 18 KYECPICLMALREA--V-QTPCGHRFCKACIIKSIRDAG------HKCPVDNEILLENQLF---PDNFAKREIL-SLMVK 84 (170)
T ss_dssp GGBCTTTCSBCSSE--E-ECTTSCEEEHHHHHHHHHHHC------SBCTTTCCBCCGGGCE---ECHHHHHHHH-TSEEE
T ss_pred CCCCCCCChhhcCc--E-ECCCCCHHHHHHHHHHHHhCC------CCCCCCccCcchhhhh---hhHHHHHHHh-hcccC
Confidence 56899999987532 3 368999999999999997532 3788 2222111 1111122221 23578
Q ss_pred cCcCCCCceeecCCCC------CCCceeCCCCchhc
Q 041841 136 CPFKDCSALLINDGLK------NMKESKRPYCKRMF 165 (216)
Q Consensus 136 Cp~~~C~~~~~~~~~~------~~~~~~C~~C~~~f 165 (216)
||+.+|+..+...... ....+.|+.|+..+
T Consensus 85 C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~~C~~~~ 120 (170)
T 3hcs_A 85 CPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPF 120 (170)
T ss_dssp CCSTTCCCEEEGGGHHHHHTTCTTSEEECTTTCCEE
T ss_pred CCCCCCCceecHhHHHHHHhcCCceeeECCCCChHH
Confidence 9999999988775421 23446676666554
No 6
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=1.3e-06 Score=59.94 Aligned_cols=45 Identities=31% Similarity=0.695 Sum_probs=35.1
Q ss_pred CCCCcccccCCCCCCc-eeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNEL-FSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~-~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
..+|+||++.+...+. ...+.|+|.||..|+..++... ...+.||
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP 60 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS----INGVRCP 60 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC----SSCBCCT
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC----CCCcCCC
Confidence 5789999999865442 4457999999999999999864 1246788
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.26 E-value=9.5e-07 Score=55.19 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=30.9
Q ss_pred CCCCcccccCCCC-CCceeeCCCCCccchHHHHHHHHHH
Q 041841 61 KRPFSICMEPKST-NELFSIEFCSYSYCTDCIVKYVDSK 98 (216)
Q Consensus 61 ~~~C~IC~~~~~~-~~~~~~~~C~H~fC~~C~~~y~~~~ 98 (216)
..+|+||++.+.. .+....+.|+|.||..|+..|+...
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 43 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG 43 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC
Confidence 5689999998743 3345568999999999999999864
No 8
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.17 E-value=2.9e-06 Score=55.60 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=31.1
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
..+|+||++.+...+....+.|+|.||..|+..|+..
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~ 50 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT 50 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc
Confidence 5689999998865555556899999999999999875
No 9
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=2e-06 Score=55.36 Aligned_cols=42 Identities=19% Similarity=0.532 Sum_probs=31.6
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
..+|+||++.+... . .+.|+|.||..|+.+++.. .+ ....||
T Consensus 20 ~~~C~IC~~~~~~p--~-~~~CgH~fC~~Ci~~~~~~---~~-~~~~CP 61 (63)
T 2ysj_A 20 EVICPICLDILQKP--V-TIDCGHNFCLKCITQIGET---SC-GFFKCP 61 (63)
T ss_dssp CCBCTTTCSBCSSC--E-ECTTSSEECHHHHHHHHHH---CS-SCCCCS
T ss_pred CCCCCcCCchhCCe--E-EeCCCCcchHHHHHHHHHc---CC-CCCcCc
Confidence 56899999987532 3 3599999999999999985 11 235676
No 10
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=4.4e-06 Score=56.63 Aligned_cols=45 Identities=20% Similarity=0.486 Sum_probs=35.2
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
..+|+||++.+... . .+.|+|.||..|+..++..+...+. .+.||
T Consensus 19 ~~~C~IC~~~~~~p--~-~~~CgH~fC~~Ci~~~~~~~~~~~~-~~~CP 63 (85)
T 2ecv_A 19 EVTCPICLELLTQP--L-SLDCGHSFCQACLTANHKKSMLDKG-ESSCP 63 (85)
T ss_dssp CCCCTTTCSCCSSC--B-CCSSSCCBCTTHHHHHHHHHHHTTS-CCCCT
T ss_pred CCCCCCCCcccCCc--e-eCCCCCHHHHHHHHHHHHHhhcCCC-CCcCC
Confidence 57899999987542 2 3589999999999999998765432 46788
No 11
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.11 E-value=3.7e-06 Score=60.93 Aligned_cols=73 Identities=21% Similarity=0.451 Sum_probs=47.2
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc-----CCCHHHH---HHHHHHHHHhhhcCCC
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP-----IVPKEVS---DRWGNALCEGVINGAE 132 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp-----~l~~~~~---~~y~~~~~~~~v~~~~ 132 (216)
...|+||++.+.. .. .+.|||.||..|+..++... ...|| +...++. ..+.+.+. .-
T Consensus 23 ~~~C~IC~~~~~~--p~-~~~CgH~fC~~Ci~~~~~~~------~~~CP~Cr~~~~~~~~~~~~~~l~~~i~------~l 87 (116)
T 1rmd_A 23 SISCQICEHILAD--PV-ETSCKHLFCRICILRCLKVM------GSYCPSCRYPCFPTDLESPVKSFLNILN------SL 87 (116)
T ss_dssp HTBCTTTCSBCSS--EE-ECTTSCEEEHHHHHHHHHHT------CSBCTTTCCBCCGGGCBCCCHHHHHHHH------HC
T ss_pred CCCCCCCCcHhcC--cE-EcCCCCcccHHHHHHHHhHC------cCcCCCCCCCCCHhhccccHHHHHHHHH------Hh
Confidence 4689999998743 23 36899999999999999862 24788 2221111 11111111 12
Q ss_pred CcccCcCCCCceeecC
Q 041841 133 KFYCPFKDCSALLIND 148 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~ 148 (216)
.++||+.+|+..+...
T Consensus 88 ~v~C~~~gC~~~~~~~ 103 (116)
T 1rmd_A 88 MVKCPAQDCNEEVSLE 103 (116)
T ss_dssp EEECCSTTCCCEEEHH
T ss_pred cCCCCCCCCcchhhHh
Confidence 4689999999888654
No 12
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.06 E-value=3.6e-06 Score=61.31 Aligned_cols=76 Identities=18% Similarity=0.415 Sum_probs=49.2
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc-----CCCHHHHHHHHHHHHHhhhcCCCCcc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP-----IVPKEVSDRWGNALCEGVINGAEKFY 135 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp-----~l~~~~~~~y~~~~~~~~v~~~~~~~ 135 (216)
...|+||++.+... + .+.|||.||..|+..++...- ..|| +...+++ ....++..+. .-.++
T Consensus 18 ~~~C~IC~~~~~~p--~-~~~CgH~fC~~Ci~~~~~~~~------~~CP~Cr~~~~~~~~~---~~~~l~~~i~-~l~v~ 84 (118)
T 3hct_A 18 KYECPICLMALREA--V-QTPCGHRFCKACIIKSIRDAG------HKCPVDNEILLENQLF---PDNFAKREIL-SLMVK 84 (118)
T ss_dssp GGBCTTTCSBCSSE--E-ECTTSCEEEHHHHHHHHHHHC------SBCTTTCCBCCGGGCE---ECHHHHHHHH-TSEEE
T ss_pred CCCCCcCChhhcCe--E-ECCcCChhhHHHHHHHHhhCC------CCCCCCCCCcCHHhcc---cCHHHHHHHc-cceeE
Confidence 46899999877532 3 368999999999999987532 2788 2222111 1111222221 23579
Q ss_pred cCcCCCCceeecCC
Q 041841 136 CPFKDCSALLINDG 149 (216)
Q Consensus 136 Cp~~~C~~~~~~~~ 149 (216)
||+.+|+..+....
T Consensus 85 C~n~gC~~~~~~~~ 98 (118)
T 3hct_A 85 CPNEGCLHKMELRH 98 (118)
T ss_dssp CSSTTCCCEEEGGG
T ss_pred CCCCCCCCEEeeHH
Confidence 99999999887754
No 13
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.05 E-value=3e-06 Score=60.78 Aligned_cols=42 Identities=24% Similarity=0.547 Sum_probs=31.9
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
..+|+||++.+... . .+.|||.||..|+..++... ...+.||
T Consensus 21 ~~~C~IC~~~~~~p--~-~~~CgH~fC~~Ci~~~~~~~----~~~~~CP 62 (112)
T 1jm7_A 21 ILECPICLELIKEP--V-STKCDHIFCKFCMLKLLNQK----KGPSQCP 62 (112)
T ss_dssp HTSCSSSCCCCSSC--C-BCTTSCCCCSHHHHHHHHSS----SSSCCCT
T ss_pred CCCCcccChhhcCe--E-ECCCCCHHHHHHHHHHHHhC----CCCCCCc
Confidence 46899999977532 2 36899999999999998743 1246888
No 14
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=2.4e-06 Score=56.75 Aligned_cols=37 Identities=16% Similarity=0.530 Sum_probs=31.3
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
..+|+||++.+........+.|+|.||..|+..|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~ 51 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV 51 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc
Confidence 5689999999876655556689999999999999975
No 15
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=3e-06 Score=56.54 Aligned_cols=37 Identities=16% Similarity=0.476 Sum_probs=31.5
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
..+|+||++.+...+.+..+.|+|.||..|+..|+..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~ 59 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA 59 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc
Confidence 5689999999876665666789999999999999874
No 16
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.02 E-value=2.8e-06 Score=53.06 Aligned_cols=37 Identities=14% Similarity=0.366 Sum_probs=29.4
Q ss_pred CCCCcccccCCCCCCceeeCC-CCCccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEF-CSYSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~C~~~y~~~ 97 (216)
..+|+||++.+...+....+. |+|.||..|+.+|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~ 42 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS 42 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc
Confidence 568999999987655444454 9999999999998753
No 17
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.01 E-value=1.8e-06 Score=56.79 Aligned_cols=37 Identities=22% Similarity=0.539 Sum_probs=29.6
Q ss_pred CCCCcccccCCCC----CCceeeCCCCCccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKST----NELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~----~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
..+|+||++.+.. .+....+.|+|.||..|+..++..
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~ 50 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN 50 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc
Confidence 5789999998643 233456899999999999999874
No 18
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.01 E-value=3.8e-06 Score=56.41 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=30.7
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVD 96 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~ 96 (216)
..+|+||++.+........+.|+|.||..|+..|+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~ 50 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE 50 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH
Confidence 578999999987665555678999999999999985
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.00 E-value=1e-05 Score=54.71 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=34.1
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
..+|+||++.+... . .+.|+|.||..|+..|+.....++ ....||
T Consensus 19 ~~~C~IC~~~~~~p--~-~~~CgH~fC~~Ci~~~~~~~~~~~-~~~~CP 63 (85)
T 2ecw_A 19 EVTCPICLELLKEP--V-SADCNHSFCRACITLNYESNRNTD-GKGNCP 63 (85)
T ss_dssp TTSCTTTCSCCSSC--E-ECTTSCCBCHHHHHHHHHHSBCTT-SCBCCT
T ss_pred CCCCcCCChhhCcc--e-eCCCCCHHHHHHHHHHHHhccCCC-CCCCCC
Confidence 56899999987542 2 468999999999999998755222 246787
No 20
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.97 E-value=5.2e-06 Score=56.18 Aligned_cols=43 Identities=23% Similarity=0.508 Sum_probs=30.4
Q ss_pred CCCCcccccCCCCCCcee-eCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFS-IEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~-~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
..+|+||++.+...+... -+.|||.||+.||..+... + ...||
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~----~--~~~CP 54 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD----E--NGLCP 54 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS----S--CSBCT
T ss_pred CCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc----C--CCCCC
Confidence 578999999875443322 1359999999999877542 2 35787
No 21
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=3.8e-06 Score=54.73 Aligned_cols=37 Identities=22% Similarity=0.539 Sum_probs=29.7
Q ss_pred CCCCcccccCCCC----CCceeeCCCCCccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKST----NELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~----~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
..+|+||++.+.. .+.+..+.|+|.||..|+..|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~ 55 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN 55 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc
Confidence 5789999998643 233356899999999999999975
No 22
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.95 E-value=1.1e-06 Score=59.18 Aligned_cols=46 Identities=22% Similarity=0.397 Sum_probs=34.2
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
..+|+||++.+... . .+.|||.||..|+..|+......+.....||
T Consensus 12 ~~~C~IC~~~~~~p--~-~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP 57 (79)
T 2egp_A 12 EVTCPICLELLTEP--L-SLDCGHSLCRACITVSNKEAVTSMGGKSSCP 57 (79)
T ss_dssp CCEETTTTEECSSC--C-CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCS
T ss_pred CCCCcCCCcccCCe--e-ECCCCCHHHHHHHHHHHHhcccCCCCCCcCC
Confidence 56899999987542 2 3689999999999998876443333356788
No 23
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.95 E-value=2.4e-06 Score=54.87 Aligned_cols=37 Identities=22% Similarity=0.526 Sum_probs=29.2
Q ss_pred CCCCcccccCCCC----CCceeeCCCCCccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKST----NELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~----~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
..+|+||++.+.. .+....+.|+|.||..|+.+++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~ 43 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN 43 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc
Confidence 4689999998643 233356799999999999999875
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=5.3e-06 Score=54.84 Aligned_cols=42 Identities=21% Similarity=0.507 Sum_probs=31.3
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
..+|+||++.+.. ...+.|+|.||..|+..++.. ......||
T Consensus 20 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~----~~~~~~CP 61 (73)
T 2ysl_A 20 EVICPICLDILQK---PVTIDCGHNFCLKCITQIGET----SCGFFKCP 61 (73)
T ss_dssp CCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSS----SCSCCCCS
T ss_pred CCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHc----CCCCCCCC
Confidence 5689999997753 234599999999999998762 12346777
No 25
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=6.7e-06 Score=51.74 Aligned_cols=33 Identities=24% Similarity=0.638 Sum_probs=27.3
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVD 96 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~ 96 (216)
...|+||++.+... ..+.|+|.||..|+..++.
T Consensus 15 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 15 EASCSVCLEYLKEP---VIIECGHNFCKACITRWWE 47 (58)
T ss_dssp CCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTT
T ss_pred CCCCccCCcccCcc---EeCCCCCccCHHHHHHHHH
Confidence 56899999987543 2368999999999999975
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=2.3e-05 Score=52.96 Aligned_cols=39 Identities=18% Similarity=0.415 Sum_probs=31.1
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
...|+||++.+.. ...+.|+|.||..|+..++.. ...||
T Consensus 15 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~-------~~~CP 53 (81)
T 2csy_A 15 PFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRA-------TPRCY 53 (81)
T ss_dssp CSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHH-------CSBCS
T ss_pred CCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHC-------CCcCC
Confidence 5689999998743 234799999999999999974 34787
No 27
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=1.3e-05 Score=52.90 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=28.3
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
...|+||++.+.. ...+..|+|.||..|+..++..
T Consensus 15 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~ 49 (72)
T 2djb_A 15 YILCSICKGYLID--ATTITECLHTFCKSCIVRHFYY 49 (72)
T ss_dssp GGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHH
T ss_pred CCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHc
Confidence 5689999998753 2344599999999999999975
No 28
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.81 E-value=1.1e-05 Score=55.92 Aligned_cols=36 Identities=11% Similarity=0.287 Sum_probs=30.6
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVD 96 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~ 96 (216)
..+|+||++.+...+....+.|+|.||..|+..|+.
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~ 75 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ 75 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH
Confidence 568999999987666566678999999999999985
No 29
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.80 E-value=1.1e-05 Score=52.11 Aligned_cols=43 Identities=16% Similarity=0.461 Sum_probs=30.3
Q ss_pred CCCCccccc-CCCCCCc-eeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICME-PKSTNEL-FSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~-~~~~~~~-~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
..+|+||++ .+..... ...+.|||.||..|+.+++.. + ...||
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~--~~~CP 47 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G--AGNCP 47 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----T--SSSCT
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----C--CCcCC
Confidence 468999999 4433221 234799999999999999763 1 35677
No 30
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.80 E-value=9.8e-06 Score=61.01 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=47.4
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc-----CCCHH------HHHHHHHHHHHhhhc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP-----IVPKE------VSDRWGNALCEGVIN 129 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp-----~l~~~------~~~~y~~~~~~~~v~ 129 (216)
...|+||++.+... + .+.|||.||..|+..++.. + ...|| +...+ .-+.|.....+..+.
T Consensus 31 ~~~C~IC~~~~~~p--v-~~~CgH~FC~~Ci~~~~~~----~--~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 31 KYLCSACRNVLRRP--F-QAQCGHRYCSFCLASILSS----G--PQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GGBCTTTCSBCSSE--E-ECTTSCEEEHHHHHHHGGG----S--CEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred CcCCCCCChhhcCc--E-ECCCCCccCHHHHHHHHhc----C--CCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 56899999976532 3 3699999999999998852 2 35787 21110 001111112222221
Q ss_pred CCCCcccCcCCCCceeecC
Q 041841 130 GAEKFYCPFKDCSALLIND 148 (216)
Q Consensus 130 ~~~~~~Cp~~~C~~~~~~~ 148 (216)
.-.++||+.+|...+...
T Consensus 102 -~L~v~Cpn~GC~~~~~l~ 119 (141)
T 3knv_A 102 -SLPAVCPSDGCTWKGTLK 119 (141)
T ss_dssp -TSEEECCSTTCCCEEEHH
T ss_pred -ccccccCCCCCCCEeEHH
Confidence 235799999999887654
No 31
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=9.2e-06 Score=52.73 Aligned_cols=33 Identities=15% Similarity=0.361 Sum_probs=27.0
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVD 96 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~ 96 (216)
..+|+||++.+... . .+.|||.||..|+..++.
T Consensus 15 ~~~C~IC~~~~~~p--~-~~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP--K-QTECGHRFCESCMAALLS 47 (66)
T ss_dssp CEECTTTCCEESSC--C-CCSSSCCCCHHHHHHHHT
T ss_pred CCCCCCCChHhcCe--e-ECCCCCHHHHHHHHHHHH
Confidence 56899999987533 2 268999999999999986
No 32
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.78 E-value=4.1e-05 Score=51.17 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=30.8
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
...|+||++.+.. -. .+.|||.||+.|+..++.. | ...||
T Consensus 8 ~~~C~IC~~~~~~--Pv-~~~CgH~fc~~Ci~~~~~~----~--~~~CP 47 (78)
T 1t1h_A 8 YFRCPISLELMKD--PV-IVSTGQTYERSSIQKWLDA----G--HKTCP 47 (78)
T ss_dssp SSSCTTTSCCCSS--EE-EETTTEEEEHHHHHHHHTT----T--CCBCT
T ss_pred cCCCCCccccccC--CE-EcCCCCeecHHHHHHHHHH----C--cCCCC
Confidence 5789999997643 23 3589999999999999962 2 35787
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.78 E-value=2.9e-05 Score=54.74 Aligned_cols=41 Identities=27% Similarity=0.530 Sum_probs=32.1
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
...|+||++.+.. ....+.|||.||..|+..++... ...||
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~~------~~~CP 62 (100)
T 3lrq_A 22 VFRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQ------RAQCP 62 (100)
T ss_dssp HTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHT------CSBCT
T ss_pred CCCCccCCccccC--ccccCCCCChhhHHHHHHHHHHC------cCCCC
Confidence 4689999998753 23337999999999999999863 15788
No 34
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.78 E-value=1.3e-05 Score=57.63 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=33.2
Q ss_pred CCCCcccccCCCCCC---------------ceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNE---------------LFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~---------------~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
..+|+||++.+.... ...++.|+|.||..|+..|+...-. .....||
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~--~~~~~CP 86 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK--DGSLQCP 86 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC--SSCCBCT
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC--CCCCcCC
Confidence 358999999974321 2336899999999999999954221 1245787
No 35
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=8.6e-06 Score=53.70 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=29.9
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
..+|+||++.+.. .. .+.|+|.||..|+..++... ..||
T Consensus 15 ~~~C~IC~~~~~~--~~-~~~CgH~fC~~Ci~~~~~~~-------~~CP 53 (71)
T 2d8t_A 15 VPECAICLQTCVH--PV-SLPCKHVFCYLCVKGASWLG-------KRCA 53 (71)
T ss_dssp CCBCSSSSSBCSS--EE-EETTTEEEEHHHHHHCTTCS-------SBCS
T ss_pred CCCCccCCcccCC--CE-EccCCCHHHHHHHHHHHHCC-------CcCc
Confidence 5789999998643 23 35899999999999887532 4787
No 36
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.73 E-value=1.9e-05 Score=52.51 Aligned_cols=41 Identities=24% Similarity=0.505 Sum_probs=31.4
Q ss_pred CCCCcccccCCCCCCceeeCC-CCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEF-CSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
...|+||++.+... +. +. |+|.||..|+..++... + ...||
T Consensus 15 ~~~C~IC~~~~~~p--~~-~~~CgH~fC~~Ci~~~~~~~---~--~~~CP 56 (74)
T 2yur_A 15 ELLCLICKDIMTDA--VV-IPCCGNSYCDECIRTALLES---D--EHTCP 56 (74)
T ss_dssp GGSCSSSCCCCTTC--EE-CSSSCCEECTTHHHHHHHHS---S--SSCCS
T ss_pred CCCCcCCChHHhCC--eE-cCCCCCHHHHHHHHHHHHhc---C--CCcCC
Confidence 56899999987532 33 56 99999999999999852 2 35787
No 37
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=1.3e-05 Score=52.55 Aligned_cols=32 Identities=34% Similarity=0.768 Sum_probs=26.9
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVD 96 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~ 96 (216)
..+|+||++.+.. ..+.|+|.||..|+..++.
T Consensus 15 ~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 15 EEECCICMDGRAD----LILPCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCCSSSCCSCCS----EEETTTEEECHHHHHHSSC
T ss_pred CCCCeeCCcCccC----cccCCCCcccHHHHHHHHH
Confidence 5689999998754 3468999999999998776
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.70 E-value=2.7e-05 Score=56.97 Aligned_cols=40 Identities=20% Similarity=0.430 Sum_probs=31.0
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
...|+||++.+.. ...++|||.||..|+..++.. ....||
T Consensus 52 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~------~~~~CP 91 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRA------QVFSCP 91 (124)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHT------TCCBCT
T ss_pred CCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhH------CcCCCC
Confidence 4689999998753 234699999999999999872 235788
No 39
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.68 E-value=2.7e-05 Score=50.59 Aligned_cols=35 Identities=23% Similarity=0.519 Sum_probs=28.2
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
..+|+||++.+... ...++|+|.||..|+..|+..
T Consensus 5 ~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~ 39 (68)
T 1chc_A 5 AERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQ 39 (68)
T ss_dssp CCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHH
T ss_pred CCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhC
Confidence 56899999986432 245789999999999999863
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.66 E-value=3e-05 Score=53.60 Aligned_cols=41 Identities=24% Similarity=0.538 Sum_probs=31.2
Q ss_pred CCCCcccccCCCCCCceeeCC-CCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEF-CSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
...|+||++.+... . .+. |||.||..|+..++... + ...||
T Consensus 13 ~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~~---~--~~~CP 54 (92)
T 3ztg_A 13 ELLCLICKDIMTDA--V-VIPCCGNSYCDECIRTALLES---D--EHTCP 54 (92)
T ss_dssp TTEETTTTEECSSC--E-ECTTTCCEECHHHHHHHHHHC---T--TCCCT
T ss_pred CCCCCCCChhhcCc--e-ECCCCCCHHHHHHHHHHHHhc---C--CCcCc
Confidence 57899999977532 3 356 99999999999998732 2 36788
No 41
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.56 E-value=3.1e-05 Score=57.85 Aligned_cols=38 Identities=29% Similarity=0.585 Sum_probs=29.4
Q ss_pred CCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 62 RPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 62 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
.+|+||++.+.. ...++|||.||..|+..|+.. ...||
T Consensus 54 ~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~-------~~~CP 91 (138)
T 4ayc_A 54 LQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKR-------KIECP 91 (138)
T ss_dssp SBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTT-------CSBCT
T ss_pred CCCcccCcccCC---ceECCCCCCccHHHHHHHHHc-------CCcCC
Confidence 579999998743 234689999999999998753 24688
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.56 E-value=3e-05 Score=55.34 Aligned_cols=40 Identities=28% Similarity=0.570 Sum_probs=31.2
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
...|+||++.+.. -..+..|||.||..|+..++... ..||
T Consensus 15 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~-------~~CP 54 (108)
T 2ckl_A 15 HLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETS-------KYCP 54 (108)
T ss_dssp GTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSC-------SBCT
T ss_pred cCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHhC-------CcCc
Confidence 4689999998743 34445999999999999998742 5787
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.46 E-value=8.2e-05 Score=56.47 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=31.2
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
...|+||++.+.. ...+.|+|.||..|+..++.. ....||
T Consensus 78 ~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~------~~~~CP 117 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKA------QVFSCP 117 (150)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHT------TCCBCT
T ss_pred CCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHh------CCCcCC
Confidence 4689999997643 223799999999999999974 235788
No 44
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.43 E-value=3.1e-05 Score=48.72 Aligned_cols=30 Identities=13% Similarity=0.329 Sum_probs=24.3
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVK 93 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~ 93 (216)
...|+||++.+... ..+.|+|.||..|+..
T Consensus 6 ~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 6 FLRCQQCQAEAKCP---KLLPCLHTLCSGCLEA 35 (56)
T ss_dssp CSSCSSSCSSCBCC---SCSTTSCCSBTTTCSS
T ss_pred CCCceEeCCccCCe---EEcCCCCcccHHHHcc
Confidence 46899999987643 3478999999999865
No 45
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.43 E-value=6.9e-05 Score=52.51 Aligned_cols=40 Identities=33% Similarity=0.667 Sum_probs=30.9
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
..+|+||++.+.. -..+..|||.||..|+..++.. ...||
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~-------~~~CP 61 (99)
T 2y43_A 22 LLRCGICFEYFNI--AMIIPQCSHNYCSLCIRKFLSY-------KTQCP 61 (99)
T ss_dssp HTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHTT-------CCBCT
T ss_pred CCCcccCChhhCC--cCEECCCCCHhhHHHHHHHHHC-------CCCCC
Confidence 4689999998753 2333489999999999999873 24788
No 46
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=7.4e-05 Score=50.62 Aligned_cols=36 Identities=17% Similarity=0.365 Sum_probs=25.3
Q ss_pred CCCcccccCCC-----------CCC-ceeeCCCCCccchHHHHHHHHH
Q 041841 62 RPFSICMEPKS-----------TNE-LFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 62 ~~C~IC~~~~~-----------~~~-~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
.+|+||++++. ..+ ...+..|+|.|+.+|+.+++..
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~ 63 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ 63 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh
Confidence 45666666553 333 3445579999999999999874
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.33 E-value=0.00015 Score=55.53 Aligned_cols=41 Identities=24% Similarity=0.647 Sum_probs=31.7
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
...|+||++.+.. ...++.|||.||..|+..++.. + ...||
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~----~--~~~CP 94 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKECLHRFCADCIITALRS----G--NKECP 94 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHT----T--CCBCT
T ss_pred CCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHh----C--cCCCC
Confidence 4589999998753 3444599999999999999873 1 35788
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.26 E-value=0.00012 Score=53.04 Aligned_cols=34 Identities=15% Similarity=0.408 Sum_probs=26.6
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVD 96 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~ 96 (216)
...|+||++.+... +.+..|||.||..|+..++.
T Consensus 22 ~~~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 22 LLRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TTSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTT
T ss_pred CCCCCCCChHhhCc--cEeCCCCCHHHHHHHHHHhc
Confidence 57899999987532 33238999999999998875
No 49
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.15 E-value=0.0006 Score=47.36 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=32.0
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
...|+||++.+.. -+.+..|||.||+.|+..|+...-.. .....||
T Consensus 7 ~~~CPI~~~~~~d--PV~~~~cGh~f~r~cI~~~l~~~~~~-~~~~~CP 52 (94)
T 2yu4_A 7 GFTCPITKEEMKK--PVKNKVCGHTYEEDAIVRMIESRQKR-KKKAYCP 52 (94)
T ss_dssp CCBCTTTCSBCSS--EEEESSSCCEEEHHHHHHHHHHHHTT-TCCBCCC
T ss_pred EeECcCcCchhcC--CEEcCCCCCeecHHHHHHHHHHccCc-CCCCCCC
Confidence 5689999987642 23333599999999999999864211 1235666
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.00029 Score=58.03 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=31.3
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
...|+||++.+.. -++...|||.||+.|+..|+.. .| ...||
T Consensus 181 el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~---~~--~~~CP 222 (267)
T 3htk_C 181 ELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQG---YT--TRDCP 222 (267)
T ss_dssp CSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTT---CS--CEECS
T ss_pred eeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHh---CC--CCCCC
Confidence 5689999997743 2444689999999999999863 12 35677
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.97 E-value=0.00011 Score=52.83 Aligned_cols=40 Identities=28% Similarity=0.564 Sum_probs=30.0
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
..+|+||++.+.. -. .+.|||.||..|+..++.. + ...||
T Consensus 15 ~~~C~iC~~~~~~--p~-~~~CgH~fC~~Ci~~~~~~----~--~~~CP 54 (115)
T 3l11_A 15 ECQCGICMEILVE--PV-TLPCNHTLCKPCFQSTVEK----A--SLCCP 54 (115)
T ss_dssp HHBCTTTCSBCSS--CE-ECTTSCEECHHHHCCCCCT----T--TSBCT
T ss_pred CCCCccCCcccCc--ee-EcCCCCHHhHHHHHHHHhH----C--cCCCC
Confidence 4689999988753 23 3589999999999887742 1 36788
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.97 E-value=0.00025 Score=47.06 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=24.2
Q ss_pred CCCCcccccCCCCCCceeeCCCCCc-cchHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYS-YCTDCIVKY 94 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~-fC~~C~~~y 94 (216)
...|.||++.... ..+++|||. ||..|+..+
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV 55 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC
Confidence 4689999987542 334699999 999998764
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.93 E-value=0.00084 Score=45.77 Aligned_cols=34 Identities=3% Similarity=-0.250 Sum_probs=27.6
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
...|+||++.+.. ...+.|||.||+.|+..|+..
T Consensus 14 ~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~ 47 (85)
T 2kr4_A 14 EFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLN 47 (85)
T ss_dssp TTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHH
T ss_pred heECcccCchhcC---CeECCCCCEECHHHHHHHHhc
Confidence 5789999987643 234679999999999999984
No 54
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.84 E-value=0.0016 Score=43.99 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=33.1
Q ss_pred CCCCcccccCCCCCCceeeCCCC-----CccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCS-----YSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~-----H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
...|.||++++...+.+ .++|. |.|..+|+.+|+..+ + ...||
T Consensus 15 ~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~--~~~Cp 62 (80)
T 2d8s_A 15 QDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSS---D--TRCCE 62 (80)
T ss_dssp SCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHH---C--CSBCS
T ss_pred CCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhC---C--CCCCC
Confidence 56899999988655444 46886 999999999999864 1 24676
No 55
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.80 E-value=0.00072 Score=44.83 Aligned_cols=29 Identities=21% Similarity=0.511 Sum_probs=22.9
Q ss_pred CCCCcccccCCCCCCceeeCCCCCc-cchHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYS-YCTDCIV 92 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~-fC~~C~~ 92 (216)
..+|+||++.... ..+++|+|. ||..|+.
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~ 54 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAE 54 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHH
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhh
Confidence 3589999987543 335799999 9999985
No 56
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.63 E-value=0.0014 Score=46.72 Aligned_cols=37 Identities=14% Similarity=0.337 Sum_probs=27.5
Q ss_pred CCCCcccccCCCCC---------------CceeeCCCCCccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKSTN---------------ELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~~---------------~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
..+|.||++.+... .....+.|+|.|+..|+..++..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~ 88 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 88 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc
Confidence 34688888876532 12345799999999999999874
No 57
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.55 E-value=0.0016 Score=41.57 Aligned_cols=38 Identities=32% Similarity=0.690 Sum_probs=32.5
Q ss_pred CCcccCcCCCCceeecCCCCCCCceeCCC--CchhccccCCCCC
Q 041841 132 EKFYCPFKDCSALLINDGLKNMKESKRPY--CKRMFCAQCKVPW 173 (216)
Q Consensus 132 ~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~--C~~~fC~~C~~~~ 173 (216)
+.+.|| .|...|...++ -..++|.. |+..||+.|+.+|
T Consensus 5 ~~k~CP--~C~~~Iek~~G--CnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECP--KCHVTIEKDGG--CNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCT--TTCCCCSSCCS--CCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECc--CCCCeeEeCCC--CCcEEECCCCcCCEEeeCcCCCc
Confidence 457899 89999988654 67899988 9999999999988
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.55 E-value=0.0015 Score=56.73 Aligned_cols=33 Identities=30% Similarity=0.651 Sum_probs=27.2
Q ss_pred CCCcccccCCCCCCceeeCCCCCccchHHHHHHHHH
Q 041841 62 RPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 62 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
.+|+||++.... ...++|||.||..|+..++..
T Consensus 333 ~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~ 365 (389)
T 2y1n_A 333 QLCKICAENDKD---VKIEPCGHLMCTSCLTSWQES 365 (389)
T ss_dssp SBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHH
T ss_pred CCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhc
Confidence 689999997643 345799999999999998873
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.53 E-value=0.0026 Score=41.46 Aligned_cols=29 Identities=14% Similarity=0.537 Sum_probs=23.9
Q ss_pred CCCCcccccCCCCCCceeeCCCCCc-cchHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYS-YCTDCIV 92 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~-fC~~C~~ 92 (216)
...|.||++.... ..+++|+|. ||..|..
T Consensus 15 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~ 44 (68)
T 2ea5_A 15 SKDCVVCQNGTVN---WVLLPCRHTCLCDGCVK 44 (68)
T ss_dssp SSCCSSSSSSCCC---CEETTTTBCCSCTTHHH
T ss_pred CCCCCCcCcCCCC---EEEECCCChhhhHHHHh
Confidence 5689999987542 446899999 9999998
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.50 E-value=0.0011 Score=48.28 Aligned_cols=37 Identities=22% Similarity=0.539 Sum_probs=28.8
Q ss_pred CCCCcccccCCCC----CCceeeCCCCCccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKST----NELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~----~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
...|+||++.+.. ......+.|+|.||..|+..++..
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~ 112 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN 112 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH
T ss_pred CCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc
Confidence 5689999997642 122345799999999999999874
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.40 E-value=0.0014 Score=42.13 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=25.8
Q ss_pred CCCCcccccCCCCCCceeeCCCCCc-cchHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYS-YCTDCIVKYVD 96 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~-fC~~C~~~y~~ 96 (216)
..+|.||++..... .+..++|||. ||.+|...+..
T Consensus 8 ~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~ 43 (64)
T 2vje_A 8 IEPCVICQGRPKNG-CIVHGKTGHLMACFTCAKKLKK 43 (64)
T ss_dssp GSCCTTTSSSCSCE-EEEETTEEEEEECHHHHHHHHH
T ss_pred cCCCCcCCCCCCCE-EEECCCCCChhhHHHHHHHHHH
Confidence 56899999975432 1212499999 89999998765
No 62
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.28 E-value=0.0034 Score=44.10 Aligned_cols=33 Identities=3% Similarity=-0.248 Sum_probs=26.7
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVD 96 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~ 96 (216)
...|+||++.+.. -+ .++|||.||+.|+..|+.
T Consensus 29 ~~~CpI~~~~m~d--PV-~~~cGhtf~r~~I~~~l~ 61 (100)
T 2kre_A 29 EFRDPLMDTLMTD--PV-RLPSGTIMDRSIILRHLL 61 (100)
T ss_dssp TTBCTTTCSBCSS--EE-EETTTEEEEHHHHHHHTT
T ss_pred hhCCcCccCcccC--Ce-ECCCCCEEchHHHHHHHH
Confidence 5789999987642 23 357999999999999987
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.04 E-value=0.0033 Score=42.18 Aligned_cols=31 Identities=16% Similarity=0.409 Sum_probs=23.9
Q ss_pred CCCCcccccCCCCCCceeeCCCCCc-cchHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYS-YCTDCIVKY 94 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~-fC~~C~~~y 94 (216)
...|.||++.... ..+++|||. ||..|...+
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~ 49 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL 49 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc
Confidence 4589999987542 345799999 999998743
No 64
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.02 E-value=0.0039 Score=43.64 Aligned_cols=34 Identities=12% Similarity=-0.153 Sum_probs=27.5
Q ss_pred CCCCcccccCCCCCCceeeCCCC-CccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCS-YSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~-H~fC~~C~~~y~~~ 97 (216)
...|+||++.+.. ...+.|| |.||+.|+..|+..
T Consensus 22 ~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~ 56 (98)
T 1wgm_A 22 EFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLS 56 (98)
T ss_dssp TTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTT
T ss_pred hcCCcCccccccC---CeECCCCCeEECHHHHHHHHHh
Confidence 5689999987642 2346899 99999999999874
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=95.95 E-value=0.0024 Score=40.91 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=25.7
Q ss_pred CCCCcccccCCCCCCceeeCCCCCc-cchHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYS-YCTDCIVKYVD 96 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~-fC~~C~~~y~~ 96 (216)
..+|.||++..... .+.+.+|||. ||..|...+..
T Consensus 7 ~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~ 42 (63)
T 2vje_B 7 LKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKK 42 (63)
T ss_dssp GSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHH
T ss_pred CCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHH
Confidence 46899999865322 2223599998 99999987654
No 66
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.88 E-value=0.0046 Score=50.62 Aligned_cols=34 Identities=15% Similarity=-0.039 Sum_probs=27.6
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
...|+||++.+.. ...++|||+||+.|+..|+..
T Consensus 208 ~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~ 241 (281)
T 2c2l_A 208 YLCGKISFELMRE---PCITPSGITYDRKDIEEHLQR 241 (281)
T ss_dssp TTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHH
T ss_pred ccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHH
Confidence 5689999997643 234689999999999999974
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.71 E-value=0.0017 Score=47.05 Aligned_cols=36 Identities=17% Similarity=0.423 Sum_probs=0.0
Q ss_pred CCCcccccCCCCC--------------C-ceeeCCCCCccchHHHHHHHHH
Q 041841 62 RPFSICMEPKSTN--------------E-LFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 62 ~~C~IC~~~~~~~--------------~-~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
..|.||++++... + ....+.|+|.|+..|+..++..
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 99 (117)
T ss_dssp ---------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc
Confidence 5799999987531 1 1223589999999999999886
No 68
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=95.16 E-value=0.014 Score=45.42 Aligned_cols=34 Identities=15% Similarity=-0.039 Sum_probs=27.8
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
...|+||++.+.. ...++|||.||+.|+..|+..
T Consensus 106 ~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~ 139 (179)
T 2f42_A 106 YLCGKISFELMRE---PCITPSGITYDRKDIEEHLQR 139 (179)
T ss_dssp GGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHH
T ss_pred hhcccCccccCCC---CeECCCCCEECHHHHHHHHHh
Confidence 5689999987642 234689999999999999975
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.00 E-value=0.0089 Score=39.66 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=29.1
Q ss_pred CCCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHH
Q 041841 60 RKRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 60 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
...+|.||++.+...+ ....|+|.|...|+.+||+.
T Consensus 14 ~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~ 49 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQS 49 (74)
T ss_dssp SSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTT
T ss_pred CCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHh
Confidence 3578999999986432 33489999999999999974
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=94.27 E-value=0.0092 Score=51.18 Aligned_cols=31 Identities=19% Similarity=0.552 Sum_probs=24.4
Q ss_pred CCCCcccccCCCCCCceeeCCCCCc-cchHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYS-YCTDCIVKY 94 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~-fC~~C~~~y 94 (216)
...|+||++.... ..+++|||. ||..|+..+
T Consensus 295 ~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~ 326 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL 326 (345)
T ss_dssp TCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC
T ss_pred CCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC
Confidence 4689999997642 334699999 999998754
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.14 E-value=0.03 Score=47.91 Aligned_cols=41 Identities=12% Similarity=0.297 Sum_probs=31.7
Q ss_pred CCCCCcccccCCCC-CCce----eeCCCCCccchHHHHHHHHHHhh
Q 041841 60 RKRPFSICMEPKST-NELF----SIEFCSYSYCTDCIVKYVDSKLR 100 (216)
Q Consensus 60 ~~~~C~IC~~~~~~-~~~~----~~~~C~H~fC~~C~~~y~~~~i~ 100 (216)
+..+|+||++.+.. .++. ....|+|.|...|+.+|+...-.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~ 352 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMD 352 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHS
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCC
Confidence 46799999998865 2222 13589999999999999997654
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.96 E-value=0.035 Score=38.52 Aligned_cols=90 Identities=18% Similarity=0.301 Sum_probs=51.2
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHH-HHh-hcCCccccccCCCHHHHHHHHHHHHHhhhcCCCCcccCc
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVD-SKL-RESITSIRCPIVPKEVSDRWGNALCEGVINGAEKFYCPF 138 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~-~~i-~~~~~~i~Cp~l~~~~~~~y~~~~~~~~v~~~~~~~Cp~ 138 (216)
...|+||.+.+.......-+.|+|.||..|++.+.. ... +... +.=|+-. .......|+.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~--l~~~~~~----------------~~~~~~~C~~ 64 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHR--LIEPIPD----------------SHIRGLMCLE 64 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCC--BSSCCCS----------------CCSSCCCCSS
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCe--eeccccc----------------cCccCCcCcC
Confidence 357999997643333344479999999999997322 111 1110 1101100 0011224541
Q ss_pred CCCCceeecCCCCCCCceeCCCCchhccccCCC-CCCCCCC
Q 041841 139 KDCSALLINDGLKNMKESKRPYCKRMFCAQCKV-PWHAGMR 178 (216)
Q Consensus 139 ~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~-~~H~~~~ 178 (216)
.. .....+.|..|+...|..|.. ..|.++.
T Consensus 65 ---------H~-~e~l~~fC~~~~~~iC~~C~~~~~H~~H~ 95 (101)
T 2jun_A 65 ---------HE-DEKVNMYCVTDDQLICALCKLVGRHRDHQ 95 (101)
T ss_dssp ---------CS-SSCCCEEETTTTEEECHHHHHHTTTSSSC
T ss_pred ---------cC-CCcceEECCCCCCccchhcCCCCCcCCCC
Confidence 11 112357899999999999986 6787764
No 73
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=90.15 E-value=0.85 Score=30.39 Aligned_cols=47 Identities=17% Similarity=0.344 Sum_probs=33.0
Q ss_pred CCCCcccccCCCCCCceeeCC-CCCccchHHHHHHHHHHhhcCCcccccc
Q 041841 61 KRPFSICMEPKSTNELFSIEF-CSYSYCTDCIVKYVDSKLRESITSIRCP 109 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~C~~~y~~~~i~~~~~~i~Cp 109 (216)
..-|.+|-+......++...+ =.|.||..|-+.+|+.+-..+ .|-||
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~--EvyCP 62 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATG--EVYCP 62 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSS--CCCCT
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCC--cEECC
Confidence 567999999876666554221 249999999999999875543 34444
No 74
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=90.13 E-value=0.23 Score=31.22 Aligned_cols=34 Identities=9% Similarity=-0.023 Sum_probs=26.5
Q ss_pred CCCcccccCCCCCCceeeCCCCCccchHHHHHHHHH
Q 041841 62 RPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 62 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
..|+|+++.... -+....+||.|++.|+.+||..
T Consensus 4 ~~CpIs~~~m~d--PV~~~~sG~~yer~~I~~~l~~ 37 (61)
T 2bay_A 4 MLCAISGKVPRR--PVLSPKSRTIFEKSLLEQYVKD 37 (61)
T ss_dssp CCCTTTCSCCSS--EEEETTTTEEEEHHHHHHHHHH
T ss_pred EEecCCCCCCCC--CEEeCCCCcEEcHHHHHHHHHh
Confidence 569999987652 2332389999999999999984
No 75
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=87.44 E-value=0.32 Score=33.90 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=23.4
Q ss_pred CcccccCCCCCCceeeCCCCCccchHHHHHHHHH
Q 041841 64 FSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 64 C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
|++|--.+. --.++.+|.|.||.+|...+...
T Consensus 4 C~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~ 35 (101)
T 3vk6_A 4 CDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKK 35 (101)
T ss_dssp CTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHT
T ss_pred cCccCCCeE--EEeeeccccccHHHHHHHHHHhc
Confidence 666765443 23457899999999999887654
No 76
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=87.05 E-value=0.53 Score=29.47 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=25.9
Q ss_pred CCCCcccccCCCCCCceeeCCCC--C---ccchHHHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCS--Y---SYCTDCIVKYVDSK 98 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~--H---~fC~~C~~~y~~~~ 98 (216)
...|.||+++.. .++ ..+|. | .|..+|+.+++..+
T Consensus 6 ~~~CrIC~~~~~-~~l--~~PC~C~gs~~~~H~~Cl~~W~~~~ 45 (60)
T 1vyx_A 6 VPVCWICNEELG-NER--FRACGCTGELENVHRSCLSTWLTIS 45 (60)
T ss_dssp CCEETTTTEECS-CCC--CCSCCCSSGGGSCCHHHHHHHHHHH
T ss_pred CCEeEEeecCCC-Cce--ecCcCCCCchhhhHHHHHHHHHHhC
Confidence 468999998743 333 35655 4 89999999999864
No 77
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=82.55 E-value=1.2 Score=28.52 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=26.0
Q ss_pred CCCCcccccCCCCCCceeeCCC-CCccchHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFC-SYSYCTDCIVKYVD 96 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C-~H~fC~~C~~~y~~ 96 (216)
..-|.||.++.. +.-+.| +-.||..||++.-.
T Consensus 8 ~pWC~ICneDAt----lrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 8 LPWCCICNEDAT----LRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CSSCTTTCSCCC----EEETTTTSEEECSSHHHHHTT
T ss_pred CCeeEEeCCCCe----EEecCCCCceehHHHHHHHcc
Confidence 457999999754 667899 78999999998763
No 78
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=75.55 E-value=1.5 Score=26.02 Aligned_cols=28 Identities=21% Similarity=0.458 Sum_probs=22.3
Q ss_pred CCCceeecCCCCCCCceeCCCCchhccc
Q 041841 140 DCSALLINDGLKNMKESKRPYCKRMFCA 167 (216)
Q Consensus 140 ~C~~~~~~~~~~~~~~~~C~~C~~~fC~ 167 (216)
.|+..+...+.+..+.+.||.||+..=.
T Consensus 8 rCg~~fs~~el~~lP~IrCpyCGyrii~ 35 (48)
T 4ayb_P 8 KCWKTFTDEQLKVLPGVRCPYCGYKIIF 35 (48)
T ss_dssp CTTTTCCCCCSCCCSSSCCTTTCCSCEE
T ss_pred ccCCCccHHHHhhCCCcccCccCcEEEE
Confidence 6888887777777888999999986543
No 79
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=75.16 E-value=2 Score=31.47 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=23.0
Q ss_pred CCCcccCcCCCCceeecCCCC--CCCceeCCCCchhc
Q 041841 131 AEKFYCPFKDCSALLINDGLK--NMKESKRPYCKRMF 165 (216)
Q Consensus 131 ~~~~~Cp~~~C~~~~~~~~~~--~~~~~~C~~C~~~f 165 (216)
...++|| .|++++...... ....+.|+.|++..
T Consensus 22 ~~~~FCP--eCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 22 TTFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCCBCT--TTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cCCeeCC--CCCCEeeECccCCCceeEEECCCCCCcE
Confidence 4578999 899999775432 23357888888753
No 80
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=72.34 E-value=2.7 Score=29.73 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=22.3
Q ss_pred CcccCcCCCCceeecCCCC--CCCceeCCCCchhc
Q 041841 133 KFYCPFKDCSALLINDGLK--NMKESKRPYCKRMF 165 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~~~~--~~~~~~C~~C~~~f 165 (216)
..+|| .|++++...... ....+.|..|++.+
T Consensus 4 m~FCp--~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCI--ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCS--SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCc--CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 57899 899998776431 23458888888754
No 81
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=71.68 E-value=1.7 Score=26.13 Aligned_cols=27 Identities=15% Similarity=0.397 Sum_probs=18.6
Q ss_pred CcccCcCCCCc--eeecCCCCCCCceeCCCCchhc
Q 041841 133 KFYCPFKDCSA--LLINDGLKNMKESKRPYCKRMF 165 (216)
Q Consensus 133 ~~~Cp~~~C~~--~~~~~~~~~~~~~~C~~C~~~f 165 (216)
+++|| .|+. ++... .....|+.||.++
T Consensus 19 ~k~CP--~CG~~~fm~~~----~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCP--RCGPGVFMADH----GDRWACGKCGYTE 47 (50)
T ss_dssp SEECS--SSCSSCEEEEC----SSEEECSSSCCEE
T ss_pred cccCC--CCCCceEEecC----CCeEECCCCCCEE
Confidence 57999 6987 44332 3568899998753
No 82
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=67.30 E-value=4.2 Score=24.03 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=19.3
Q ss_pred CcccCcCCCCc-eeecCCCCCCCceeCCCCchhc
Q 041841 133 KFYCPFKDCSA-LLINDGLKNMKESKRPYCKRMF 165 (216)
Q Consensus 133 ~~~Cp~~~C~~-~~~~~~~~~~~~~~C~~C~~~f 165 (216)
...|| .|+. -+..+. ....+.|+.||..+
T Consensus 5 ~~~CP--~C~~~~l~~d~--~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCP--ACESAELIYDP--ERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCT--TTSCCCEEEET--TTTEEEESSSCCBC
T ss_pred cEeCc--CCCCcceEEcC--CCCeEECcccCCcc
Confidence 45798 7877 555543 23468888888754
No 83
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=66.89 E-value=2.4 Score=31.63 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=23.4
Q ss_pred CcccCcCCCCceeecCCCCCCCceeCCCCchhcccc
Q 041841 133 KFYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQ 168 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~ 168 (216)
++.||++.|+.-+.-... .....|..||..+++.
T Consensus 118 ~~~c~~~~cg~g~fma~h--~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANH--KDRLYCGKCHSVYKVN 151 (152)
T ss_dssp SCBCCSTTSCSSSBEEEC--SSCEEESSSSSCCEEC
T ss_pred cCcCCCccCCCceEeccc--CCCcccCCCceEEEec
Confidence 568999889873322211 2467899999988863
No 84
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=65.86 E-value=2.1 Score=30.75 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=22.7
Q ss_pred CCcccCcCCCCceeecCCC--CCCCceeCCCCchhc
Q 041841 132 EKFYCPFKDCSALLINDGL--KNMKESKRPYCKRMF 165 (216)
Q Consensus 132 ~~~~Cp~~~C~~~~~~~~~--~~~~~~~C~~C~~~f 165 (216)
.+.+|| .|++++..... .....+.|..|++..
T Consensus 3 ~~~FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS--SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCccc--ccCccCcccccCcCCCCEEECCcCCCee
Confidence 357899 89999876532 223468898898755
No 85
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=62.59 E-value=3.4 Score=33.22 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=27.7
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~~ 97 (216)
..+|.||.+-+... .....|+|.|...|+..|+..
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~ 214 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQS 214 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTT
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHh
Confidence 46899999987643 333459999999999999864
No 86
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=60.78 E-value=3.7 Score=25.15 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=19.4
Q ss_pred CcccCcCCCCceeecCCCCCCCceeCCCCchhc
Q 041841 133 KFYCPFKDCSALLINDGLKNMKESKRPYCKRMF 165 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~f 165 (216)
...|| .|+..+.... ......|..|+++.
T Consensus 18 ~~fCP--kCG~~~~ma~--~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCP--RCGPGVFLAE--HADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCT--TTTTTCCCEE--CSSEEECTTTCCCE
T ss_pred cccCc--CCCCceeEec--cCCEEECCCCCCEE
Confidence 57899 6888553322 13468899998864
No 87
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=55.70 E-value=6.3 Score=27.16 Aligned_cols=18 Identities=22% Similarity=0.778 Sum_probs=15.6
Q ss_pred ccchHHHHHHHHHHhhc-C
Q 041841 85 SYCTDCIVKYVDSKLRE-S 102 (216)
Q Consensus 85 ~fC~~C~~~y~~~~i~~-~ 102 (216)
-||++||..|+..+-.+ |
T Consensus 41 GFCRNCLskWy~~aA~~~G 59 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATEQG 59 (104)
T ss_dssp SCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 49999999999988776 5
No 88
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=54.95 E-value=7.2 Score=26.92 Aligned_cols=17 Identities=12% Similarity=0.683 Sum_probs=15.2
Q ss_pred ccchHHHHHHHHHHhhc
Q 041841 85 SYCTDCIVKYVDSKLRE 101 (216)
Q Consensus 85 ~fC~~C~~~y~~~~i~~ 101 (216)
-||++||.+|+...-.+
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 39999999999998876
No 89
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=54.93 E-value=5.3 Score=26.68 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=21.4
Q ss_pred CCcccCcCCCCceeecCCCCCCCceeCCCCchhcc
Q 041841 132 EKFYCPFKDCSALLINDGLKNMKESKRPYCKRMFC 166 (216)
Q Consensus 132 ~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC 166 (216)
....|| .|+........ .....|+.|+..|-
T Consensus 26 ~~y~Cp--~CG~~~v~r~a--tGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 26 EDHACP--NCGEDRVDRQG--TGIWQCSYCDYKFT 56 (83)
T ss_dssp SCEECS--SSCCEEEEEEE--TTEEEETTTCCEEE
T ss_pred ccCcCC--CCCCcceeccC--CCeEECCCCCCEec
Confidence 356799 78885544322 44688999998775
No 90
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=54.50 E-value=8.6 Score=25.81 Aligned_cols=41 Identities=29% Similarity=0.773 Sum_probs=28.8
Q ss_pred CcccCcCCCCceeecCCCCCCCceeCCCCchhccccCCCCCCCCCChHhH
Q 041841 133 KFYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKVPWHAGMRCEKF 182 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~~~~C~~~ 182 (216)
...|..++|..... ..+.|..|+..||..-+.+. .+.|...
T Consensus 25 ~~~C~~~~Ck~~~~-------l~f~C~~C~~~FC~~HR~~e--~H~C~~~ 65 (86)
T 1wfe_A 25 SYSCSFKGCTDVEL-------VAVICPYCEKNFCLRHRHQS--DHDCEKL 65 (86)
T ss_dssp CEECCSTTCCCEES-------SCEECTTTCCEECGGGCSTG--GGTCSSS
T ss_pred CCCCCCcCCCCCCc-------cceECCCCCcccccccCCcc--CCCCCCC
Confidence 35799889988742 23789999999999866432 2366543
No 91
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=52.73 E-value=7 Score=26.21 Aligned_cols=43 Identities=14% Similarity=0.273 Sum_probs=29.0
Q ss_pred cccCcCCCCceeecCCCCCCCceeCCCCchhccccCCCCCCCCCCh
Q 041841 134 FYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKVPWHAGMRC 179 (216)
Q Consensus 134 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~~~~C 179 (216)
+.|| +|.+.-..-. .....|.|..|+...|--=+..+.--..|
T Consensus 37 VkCp--~C~~~~~VFS-hA~t~V~C~~CgtvL~~PTGGKa~l~egc 79 (86)
T 3iz6_X 37 VKCQ--GCFNITTVFS-HSQTVVVCPGCQTVLCQPTGGKARLTEGC 79 (86)
T ss_dssp EECT--TTCCEEEEET-TCSSCCCCSSSCCCCSCCCSSSCCCSCBC
T ss_pred EECC--CCCCeeEEEe-cCCcEEEccCCCCEeecCCCCCEEecCCc
Confidence 6899 8988654422 34567999999999987655555433334
No 92
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=52.73 E-value=5.5 Score=24.79 Aligned_cols=30 Identities=20% Similarity=0.503 Sum_probs=22.6
Q ss_pred CCCcccccCCCCCCceeeCCCCCccchHHH
Q 041841 62 RPFSICMEPKSTNELFSIEFCSYSYCTDCI 91 (216)
Q Consensus 62 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~ 91 (216)
..|-.|...++....+.-..|++.||.+|=
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD 45 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD 45 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH
T ss_pred CcccccCcccCCCccEECCccCcCcccchh
Confidence 358888887754444667899999999994
No 93
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=51.15 E-value=12 Score=24.63 Aligned_cols=38 Identities=18% Similarity=0.535 Sum_probs=27.2
Q ss_pred hcCCCCcccCcCCCCceeecCCCCCCCceeCCCCchhccccCCC
Q 041841 128 INGAEKFYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKV 171 (216)
Q Consensus 128 v~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 171 (216)
+.+.....|. .|+..+.. ..+.-.|-.||..||..|..
T Consensus 14 ~~d~~~~~C~--~C~~~Fs~----~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 14 LKDDEATHCR--QCEKEFSI----SRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp -CCCCCCBCT--TTCCBCBT----TBCCEECTTTCCEECSGGGC
T ss_pred ccCccCCccc--CcCCcccC----ccccccCCCCCCEEChHHhC
Confidence 3444456787 78877643 24567899999999999975
No 94
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=50.67 E-value=6.9 Score=28.55 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=23.5
Q ss_pred CCCCcccccCCCC--CCceeeCCCCCccchHHHH
Q 041841 61 KRPFSICMEPKST--NELFSIEFCSYSYCTDCIV 92 (216)
Q Consensus 61 ~~~C~IC~~~~~~--~~~~~~~~C~H~fC~~C~~ 92 (216)
...|.+|..++.. +....-..|.|.+|..|=.
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 5689999999842 2223347899999998853
No 95
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.16 E-value=6.4 Score=24.86 Aligned_cols=40 Identities=23% Similarity=0.453 Sum_probs=27.5
Q ss_pred CcccCcCCCCceeecCCCCCCCceeCCCCchhccccCCCCCCCCCChHh
Q 041841 133 KFYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKVPWHAGMRCEK 181 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~~~~C~~ 181 (216)
...|..++|...- ...+.|..|+..||..-+.+ +.+.|..
T Consensus 12 ~~~Cs~~~Ck~~~-------ll~f~C~~C~~~FC~~HR~~--e~H~C~~ 51 (63)
T 1x4v_A 12 TNKCERAGCRQRE-------MMKLTCERCSRNFCIKHRHP--LDHDCSG 51 (63)
T ss_dssp CCCCCSTTCCCCC-------SSCCBCSSSCCBCCHHHHST--TSSCCCS
T ss_pred CCCCCccCCCCCC-------ccceECCCCCcccCcccCCc--cCCcCCC
Confidence 3579988898762 12368999999999986643 2335643
No 96
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=48.19 E-value=6.8 Score=25.35 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=19.1
Q ss_pred cccCcCCCCceeecCCCCCCCceeCCCCchhc
Q 041841 134 FYCPFKDCSALLINDGLKNMKESKRPYCKRMF 165 (216)
Q Consensus 134 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~f 165 (216)
+-|| |+.+...+.. .+...|+ ||..+
T Consensus 5 v~C~---C~~~~~~~~~--~kT~~C~-CG~~~ 30 (71)
T 1gh9_A 5 FRCD---CGRALYSREG--AKTRKCV-CGRTV 30 (71)
T ss_dssp EEET---TSCCEEEETT--CSEEEET-TTEEE
T ss_pred EECC---CCCEEEEcCC--CcEEECC-CCCee
Confidence 4576 9988767643 6678898 99864
No 97
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=48.10 E-value=21 Score=23.15 Aligned_cols=36 Identities=19% Similarity=0.478 Sum_probs=26.0
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHH-HHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVK-YVD 96 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~-y~~ 96 (216)
...|.+|-...+....-+-+.|.-.||..|++. |..
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~ 66 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPN 66 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCC
Confidence 467999986542333445688999999999986 543
No 98
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=47.26 E-value=5 Score=27.48 Aligned_cols=32 Identities=13% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCCCCcccccCCCCCCceeeCCCC-CccchHHHHHHHH
Q 041841 60 RKRPFSICMEPKSTNELFSIEFCS-YSYCTDCIVKYVD 96 (216)
Q Consensus 60 ~~~~C~IC~~~~~~~~~~~~~~C~-H~fC~~C~~~y~~ 96 (216)
+...|..|.-... . +..|. |.+|..|+...++
T Consensus 27 G~~nCKsCWf~~k--~---LV~C~dHYLCl~CLtlmL~ 59 (99)
T 2ko5_A 27 GPQFCKSCWFENK--G---LVECNNHYLCLNCLTLLLS 59 (99)
T ss_dssp CCCCCCSSCSCCS--S---EEECSSCEEEHHHHHHTCS
T ss_pred CcccChhhccccC--C---eeeecchhhHHHHHHHHHh
Confidence 4678999986543 2 33455 9999999987655
No 99
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.05 E-value=15 Score=24.11 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=24.7
Q ss_pred CCcccCcCCCCceeecCCCCCCCceeCCCCchhccccCCC
Q 041841 132 EKFYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKV 171 (216)
Q Consensus 132 ~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 171 (216)
....|. .|+..+.. ..+.-.|-.||..||..|..
T Consensus 13 ~~~~C~--~C~~~F~~----~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCT--GCSATFSV----LKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCS--SSCCCCCS----SSCCEECSSSCCEECTTTSC
T ss_pred CCCcCc--CcCCcccc----chhhhhhcCCCcEEChhhcC
Confidence 345677 67776532 24567899999999999965
No 100
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=45.93 E-value=16 Score=26.16 Aligned_cols=33 Identities=21% Similarity=0.571 Sum_probs=24.4
Q ss_pred CcccCcCCCCceeecCCCCCCCceeCCCCchhccccCCC
Q 041841 133 KFYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKV 171 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 171 (216)
...|. .|+..+.. ..+.-.|-.||..||..|..
T Consensus 69 ~~~C~--~C~~~Fs~----~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCM--ACGKGFSV----TVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCT--TTCCBCCS----SSCCEECTTTCCEECGGGSC
T ss_pred CCCCc--CcCCcccc----ccccccCCCCCeEEChHHhC
Confidence 34576 67776633 24567899999999999975
No 101
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=44.56 E-value=15 Score=24.18 Aligned_cols=34 Identities=15% Similarity=0.541 Sum_probs=24.3
Q ss_pred CcccCcCCCCceeecCCCCCCCceeCCCCchhccccCCCC
Q 041841 133 KFYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKVP 172 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~ 172 (216)
...|. .|+..+.. ..+.-.|-.||..||..|...
T Consensus 21 ~~~C~--~C~~~Fs~----~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACN--GCGCVFTT----TVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCT--TTCCBCCT----TSCCEECTTTCCEECTGGGCC
T ss_pred CCCCc--CcCCcccc----chhcccccCCCcEEChHHhCC
Confidence 34566 57776533 245678999999999999653
No 102
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=42.82 E-value=25 Score=24.64 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHhh-h-c--------CCCCcccCcCCCCceeecCCCCCCCce-eCCCCch
Q 041841 111 VPKEVSDRWGNALCEGV-I-N--------GAEKFYCPFKDCSALLINDGLKNMKES-KRPYCKR 163 (216)
Q Consensus 111 l~~~~~~~y~~~~~~~~-v-~--------~~~~~~Cp~~~C~~~~~~~~~~~~~~~-~C~~C~~ 163 (216)
+.++.+......+.+.. + . .+...+|. +|++.+.... ... .||.||.
T Consensus 41 v~~e~l~f~f~~~~~gt~~~e~a~L~i~~~p~~~~C~--~CG~~~e~~~----~~~~~CP~Cgs 98 (119)
T 2kdx_A 41 MDKSLFVSAFETFREESLVCKDAILDIVDEKVELECK--DCSHVFKPNA----LDYGVCEKCHS 98 (119)
T ss_dssp CCHHHHHHHHHHHGGGCTTTSSCCEEEEEECCEEECS--SSSCEECSCC----STTCCCSSSSS
T ss_pred ccHHHHHHHHHHHHhCChhhcCcEEEEEeccceEEcC--CCCCEEeCCC----CCCCcCccccC
Confidence 46666666555555444 3 2 13356898 8999886532 345 7888875
No 103
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=42.59 E-value=23 Score=20.69 Aligned_cols=31 Identities=13% Similarity=0.389 Sum_probs=23.9
Q ss_pred CCcccccCCCCCCceeeCCCCCccchHHHHH
Q 041841 63 PFSICMEPKSTNELFSIEFCSYSYCTDCIVK 93 (216)
Q Consensus 63 ~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~ 93 (216)
.|.||.......+++.-..|...|...|+.-
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCT
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCC
Confidence 5889988765566766678888899998853
No 104
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=42.58 E-value=18 Score=23.00 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=24.2
Q ss_pred CcccCcCCCCceeecCCCCCCCceeCCCCchhccccCC
Q 041841 133 KFYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCK 170 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~ 170 (216)
.+.|| +|.+.-..-. .....+.|..||...|--=+
T Consensus 7 ~VKCp--~C~niq~VFS-hA~tvV~C~~Cg~~L~~PTG 41 (66)
T 1qxf_A 7 KVKCP--DCEHEQVIFD-HPSTIVKCIICGRTVAEPTG 41 (66)
T ss_dssp EEECT--TTCCEEEEES-SCSSCEECSSSCCEEEECCS
T ss_pred EEECC--CCCCceEEEe-cCceEEEcccCCCEEeecCC
Confidence 35788 8988554322 34567999999999886433
No 105
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=39.72 E-value=17 Score=27.29 Aligned_cols=34 Identities=21% Similarity=0.541 Sum_probs=24.9
Q ss_pred CCCCcccccCCCCCCceeeC--CCCCccchHHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIE--FCSYSYCTDCIVKYVDS 97 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~--~C~H~fC~~C~~~y~~~ 97 (216)
+..|.||.+. .+++.-. +|...||..|+...+..
T Consensus 79 ~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 79 QSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp BSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred cceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 5689999974 3444433 68899999999886654
No 106
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.05 E-value=23 Score=22.29 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=23.1
Q ss_pred cccCcCCCCceeecCCCCCCCceeCCCCchhcccc
Q 041841 134 FYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQ 168 (216)
Q Consensus 134 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~ 168 (216)
+.|| +|.+.-..-. .....+.|..|+...|--
T Consensus 16 VkCp--~C~~~q~VFS-ha~t~V~C~~Cgt~L~~P 47 (63)
T 3j20_W 16 VKCI--DCGNEQIVFS-HPATKVRCLICGATLVEP 47 (63)
T ss_dssp EECS--SSCCEEEEES-SCSSCEECSSSCCEEEEC
T ss_pred EECC--CCCCeeEEEe-cCCeEEEccCcCCEEecC
Confidence 5799 8988554422 345679999999988854
No 107
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=39.00 E-value=25 Score=23.22 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=7.1
Q ss_pred ccCcCCCCceeecC
Q 041841 135 YCPFKDCSALLIND 148 (216)
Q Consensus 135 ~Cp~~~C~~~~~~~ 148 (216)
.|| .|...+..+
T Consensus 4 ~CP--~C~~~l~~~ 15 (81)
T 2jrp_A 4 TCP--VCHHALERN 15 (81)
T ss_dssp CCS--SSCSCCEEC
T ss_pred CCC--CCCCccccC
Confidence 466 676666553
No 108
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=38.54 E-value=12 Score=26.14 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=14.1
Q ss_pred ccCcCCCCceeecCCCCCCCceeCCCCchh
Q 041841 135 YCPFKDCSALLINDGLKNMKESKRPYCKRM 164 (216)
Q Consensus 135 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~ 164 (216)
.|- +||+.+ .+ .......||.|+..
T Consensus 69 ~C~--~CG~~F-~~--~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 69 QCR--KCGFVF-KA--EINIPSRCPKCKSE 93 (105)
T ss_dssp BBT--TTCCBC-CC--CSSCCSSCSSSCCC
T ss_pred Chh--hCcCee-cc--cCCCCCCCcCCCCC
Confidence 465 788876 21 11233667777654
No 109
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=36.80 E-value=7.7 Score=24.13 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=17.5
Q ss_pred ceeCCCCchhccccCCCCCCC
Q 041841 155 ESKRPYCKRMFCAQCKVPWHA 175 (216)
Q Consensus 155 ~~~C~~C~~~fC~~C~~~~H~ 175 (216)
--.|..|...||.+|+..+..
T Consensus 25 Gh~C~yCk~r~CaRCGg~v~l 45 (62)
T 2a20_A 25 GHNCSYCQTKFCARCGGRVSL 45 (62)
T ss_dssp CEEBTTTCCEECTTSEEEEES
T ss_pred CccccccCCeeecccCCEeee
Confidence 357999999999999987654
No 110
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=36.69 E-value=28 Score=23.22 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=24.7
Q ss_pred CCCCcccccCCCCC-CceeeCCCCCccchHHHHHH
Q 041841 61 KRPFSICMEPKSTN-ELFSIEFCSYSYCTDCIVKY 94 (216)
Q Consensus 61 ~~~C~IC~~~~~~~-~~~~~~~C~H~fC~~C~~~y 94 (216)
...|.+|...+... .-..-..||+.||..|....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 45799999887642 12334789999999998654
No 111
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=36.17 E-value=22 Score=19.59 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=19.9
Q ss_pred CceeCCCCchhccccCCC-CCCCCCC
Q 041841 154 KESKRPYCKRMFCAQCKV-PWHAGMR 178 (216)
Q Consensus 154 ~~~~C~~C~~~fC~~C~~-~~H~~~~ 178 (216)
..+.|..++...|..|.. .-|.+++
T Consensus 13 l~lfC~~d~~~iC~~C~~~~~H~~H~ 38 (42)
T 1fre_A 13 LKLYCKDDGTLSCVICRDSLKHASHN 38 (42)
T ss_dssp CCCCCCSSSSSSCCTTSSCSSCTTCC
T ss_pred eeEEeCCCCeEEeccCCCCCCCCCCc
Confidence 346799999999999987 6687753
No 112
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=35.67 E-value=25 Score=23.20 Aligned_cols=35 Identities=11% Similarity=0.299 Sum_probs=24.7
Q ss_pred cccCcCCCCceeecCCCCCCCceeCCCCchhccccCCC
Q 041841 134 FYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKV 171 (216)
Q Consensus 134 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 171 (216)
+.|| +|.+.-..-. .....|.|..||...|--=+.
T Consensus 33 VkCp--~C~n~q~VFS-hA~t~V~C~~Cg~~L~~PTGG 67 (81)
T 2xzm_6 33 VKCA--QCQNIQMIFS-NAQSTIICEKCSAILCKPTGG 67 (81)
T ss_dssp EECS--SSCCEEEEET-TCSSCEECSSSCCEEEEECSS
T ss_pred eECC--CCCCeeEEEe-cCccEEEccCCCCEEeecCCC
Confidence 4799 8988654422 345679999999998865433
No 113
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=35.53 E-value=17 Score=27.11 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=23.2
Q ss_pred CCCCcccccCCCC--CCceeeCCCCCccchHHH
Q 041841 61 KRPFSICMEPKST--NELFSIEFCSYSYCTDCI 91 (216)
Q Consensus 61 ~~~C~IC~~~~~~--~~~~~~~~C~H~fC~~C~ 91 (216)
...|.+|..++.. +....-..|.|.+|..|=
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 5689999998632 222335789999999997
No 114
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=35.23 E-value=20 Score=22.94 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=18.0
Q ss_pred cccCcCCCCceeecCCCCCCCceeCCCCchh
Q 041841 134 FYCPFKDCSALLINDGLKNMKESKRPYCKRM 164 (216)
Q Consensus 134 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~ 164 (216)
..|+ +|+..+.... ...+.|+.||..
T Consensus 29 Y~C~--~CG~~~e~~~---~d~irCp~CG~R 54 (70)
T 1twf_L 29 YICA--ECSSKLSLSR---TDAVRCKDCGHR 54 (70)
T ss_dssp EECS--SSCCEECCCT---TSTTCCSSSCCC
T ss_pred EECC--CCCCcceeCC---CCCccCCCCCce
Confidence 4587 8998875543 234679989873
No 115
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=35.16 E-value=36 Score=24.64 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHhhh-cC--------CCCcccCcCCCCceeecC
Q 041841 111 VPKEVSDRWGNALCEGVI-NG--------AEKFYCPFKDCSALLIND 148 (216)
Q Consensus 111 l~~~~~~~y~~~~~~~~v-~~--------~~~~~Cp~~~C~~~~~~~ 148 (216)
+.++.+......+.+..+ .. +...+|. +|++.+...
T Consensus 39 v~~e~l~faf~~~~~gt~~e~A~L~i~~~p~~~~C~--~CG~~~~~~ 83 (139)
T 3a43_A 39 VAEDIVKFAMEQLFAGTIAEGAEIEFVEEEAVFKCR--NCNYEWKLK 83 (139)
T ss_dssp CCHHHHHHHHHHHHTTSTTTTCEEEEEEECCEEEET--TTCCEEEGG
T ss_pred hhHHHHHHHHHHHHcCCcccCCEEEEEecCCcEECC--CCCCEEecc
Confidence 567776665555554333 22 3367898 899988654
No 116
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=35.07 E-value=21 Score=22.77 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=22.1
Q ss_pred ccCcCCCCceeecCCCCCCCceeCCCCchhccccCCC
Q 041841 135 YCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKV 171 (216)
Q Consensus 135 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 171 (216)
.|. .|+..+.. ..+.-.|-.||..||..|..
T Consensus 13 ~C~--~C~~~F~~----~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 13 ACM--ICSKKFSL----LNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp BCT--TTCCBCBT----TBCCEECTTTCCEECGGGSC
T ss_pred ccc--CCCCccCC----ccccccCCCCCEEEcccccC
Confidence 454 56665532 24567899999999999975
No 117
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=34.38 E-value=34 Score=22.24 Aligned_cols=46 Identities=13% Similarity=0.327 Sum_probs=32.1
Q ss_pred CcccCcCCCCceeecCCCCCCCceeCCCCchhccccCCCCCCCCCChHhHHHhcc
Q 041841 133 KFYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKVPWHAGMRCEKFRKLNK 187 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~~~~C~~~~~~~~ 187 (216)
...|...+|...- .-.+.|..|+..||..-+.+ +.+.|.....|..
T Consensus 14 g~~Cs~~~C~~~d-------flpf~C~~C~~~FC~~HR~~--e~H~C~~~~~~~~ 59 (75)
T 1wys_A 14 GQHCQVQHCRQRD-------FLPFVCDGCSGIFCLEHRSK--DSHGCSEVNVVKE 59 (75)
T ss_dssp CCCCSCTTTCCCS-------CCCEECTTTCCEECSTTCSS--GGGTCCCCSSCSS
T ss_pred CCCcCcccCCCcc-------ceeeECcccCcCcCcccCCc--cccCCCCCccccc
Confidence 3578888887762 22488999999999986653 2347877666654
No 118
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=33.56 E-value=17 Score=18.30 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=15.2
Q ss_pred hccccCCCCCCCCCChHh
Q 041841 164 MFCAQCKVPWHAGMRCEK 181 (216)
Q Consensus 164 ~fC~~C~~~~H~~~~C~~ 181 (216)
..|+.|++.-|....|.+
T Consensus 3 ~~Cf~CG~~GH~ardC~~ 20 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKE 20 (26)
T ss_dssp CBCTTTCCBSSCTTTTTC
T ss_pred CeeEeCCCCCcccccCCC
Confidence 469999999999888875
No 119
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=33.52 E-value=37 Score=25.55 Aligned_cols=21 Identities=24% Similarity=0.657 Sum_probs=14.8
Q ss_pred cCcCCCCceeecCCCCCCCceeCCCCch
Q 041841 136 CPFKDCSALLINDGLKNMKESKRPYCKR 163 (216)
Q Consensus 136 Cp~~~C~~~~~~~~~~~~~~~~C~~C~~ 163 (216)
|+ .||++...+ .+ -.||.||.
T Consensus 141 C~--~CG~i~~~~----~p-~~CP~Cg~ 161 (170)
T 3pwf_A 141 CP--ICGYTAVDE----AP-EYCPVCGA 161 (170)
T ss_dssp CT--TTCCEEESC----CC-SBCTTTCC
T ss_pred eC--CCCCeeCCC----CC-CCCCCCCC
Confidence 88 799998632 22 27998884
No 120
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=32.73 E-value=51 Score=22.21 Aligned_cols=38 Identities=24% Similarity=0.520 Sum_probs=26.1
Q ss_pred CCCCcccccCCCCC---Cce-eeCCCCCccchHHHHHHHHHHhhcC
Q 041841 61 KRPFSICMEPKSTN---ELF-SIEFCSYSYCTDCIVKYVDSKLRES 102 (216)
Q Consensus 61 ~~~C~IC~~~~~~~---~~~-~~~~C~H~fC~~C~~~y~~~~i~~~ 102 (216)
...|.||-|++... +.| ..-.|+-..|+.|+. ...++|
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE----YErkeG 57 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYE----YERREG 57 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH----HHHHTS
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHH----HHHhcc
Confidence 57899999997432 233 335677789999985 445565
No 121
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=31.83 E-value=28 Score=29.94 Aligned_cols=32 Identities=28% Similarity=0.604 Sum_probs=24.9
Q ss_pred CCCCcccccCCCCCCceeeC--CCCCccchHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIE--FCSYSYCTDCIVKYV 95 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~--~C~H~fC~~C~~~y~ 95 (216)
+..|.+|.+.. +++.-. .|...||..|+...+
T Consensus 93 ~~yCr~C~~Gg---~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 93 QSYCSICCSGE---TLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp BCSCTTTCCCS---SCEECCSTTCCCEECHHHHHHHT
T ss_pred cccceEcCCCC---eEEEeCCCCCCcchHHHHHHHhc
Confidence 56899999753 445444 888999999999887
No 122
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.57 E-value=18 Score=16.80 Aligned_cols=10 Identities=10% Similarity=0.115 Sum_probs=7.0
Q ss_pred eeCCCCchhc
Q 041841 156 SKRPYCKRMF 165 (216)
Q Consensus 156 ~~C~~C~~~f 165 (216)
..|+.||+.|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 5677777765
No 123
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=30.21 E-value=40 Score=22.35 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=24.4
Q ss_pred CcccCcCCCCceeecCCCCCCCceeCCCCchhccccCCC
Q 041841 133 KFYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKV 171 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 171 (216)
...|. .|+..+.. ..+.-.|-.||..||..|..
T Consensus 9 ~~~C~--~C~~~F~~----~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 9 ESRCY--GCAVKFTL----FKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CSBCT--TTCCBCCS----SSCEEECSSSCCEEETTTSC
T ss_pred CCCCc--CcCCcccC----ccccccCCCCCCEEChhHcC
Confidence 44677 67776533 24567899999999999975
No 124
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.77 E-value=26 Score=27.33 Aligned_cols=19 Identities=26% Similarity=0.781 Sum_probs=16.3
Q ss_pred CCceeCCCCchhccccCCC
Q 041841 153 MKESKRPYCKRMFCAQCKV 171 (216)
Q Consensus 153 ~~~~~C~~C~~~fC~~C~~ 171 (216)
.+.-.|-.||..||..|..
T Consensus 175 ~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 175 NRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp SCCEECTTTCCEECSTTSC
T ss_pred ccccccCCcCCEEChHHhC
Confidence 4567899999999999976
No 125
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, alloste holoenzyme; 2.85A {Moritella profunda}
Probab=29.69 E-value=19 Score=26.85 Aligned_cols=33 Identities=27% Similarity=0.550 Sum_probs=18.9
Q ss_pred CcccCcCCC-C------ceeecCCCCCCCceeCCCCchhc
Q 041841 133 KFYCPFKDC-S------ALLINDGLKNMKESKRPYCKRMF 165 (216)
Q Consensus 133 ~~~Cp~~~C-~------~~~~~~~~~~~~~~~C~~C~~~f 165 (216)
...||+|+| . ..+...........+|.+|++.|
T Consensus 105 v~~C~Np~CITn~E~v~s~F~v~~~~~~~~lrC~YCe~~~ 144 (153)
T 2be7_D 105 VFPCPNSNCITHGEPVTSSFSIKKTKGNIGLKCKYCEKTF 144 (153)
T ss_dssp SSCCSCTTCTTSSSSCCCCEEEEEETTEEEEEETTTCCEE
T ss_pred eEEcCCCCCCcCCcccccEEEEeecCCCCEEEeeCCCCEe
Confidence 568999999 3 11222110112347898888764
No 126
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.19 E-value=18 Score=21.46 Aligned_cols=12 Identities=42% Similarity=0.833 Sum_probs=9.5
Q ss_pred CCceecCCCCcc
Q 041841 204 KKWKRCPHCNYS 215 (216)
Q Consensus 204 ~~~k~CP~C~~~ 215 (216)
.+.+.||+|++.
T Consensus 10 ~~~~~CPrCn~~ 21 (49)
T 2e72_A 10 GGRKICPRCNAQ 21 (49)
T ss_dssp SSCCCCTTTCCC
T ss_pred CCceeCCccccc
Confidence 367899999863
No 127
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.16 E-value=21 Score=16.63 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=7.6
Q ss_pred eeCCCCchhcc
Q 041841 156 SKRPYCKRMFC 166 (216)
Q Consensus 156 ~~C~~C~~~fC 166 (216)
..|+.|++.|=
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 56777877663
No 128
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=28.91 E-value=31 Score=22.86 Aligned_cols=36 Identities=14% Similarity=0.345 Sum_probs=24.3
Q ss_pred cccCcCCCCceeecCCCCCCCceeCCCCchhccccCCCC
Q 041841 134 FYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKVP 172 (216)
Q Consensus 134 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~ 172 (216)
+.|| +|.+.-..-. .....|.|..||...|--=+..
T Consensus 35 VkCp--~C~~~q~VFS-ha~t~V~C~~Cg~~L~~PTGGK 70 (82)
T 3u5c_b 35 VKCP--GCLNITTVFS-HAQTAVTCESCSTILCTPTGGK 70 (82)
T ss_dssp EECT--TSCSCEEEES-BCSSCCCCSSSCCCCEECCSSB
T ss_pred EECC--CCCCeeEEEe-cCCeEEEccccCCEEeccCCCC
Confidence 5799 8887543322 2356789999999988644433
No 129
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=28.53 E-value=29 Score=22.11 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=18.5
Q ss_pred CcccCcCCCCceeecCCCCCCCceeCCCCchhc
Q 041841 133 KFYCPFKDCSALLINDGLKNMKESKRPYCKRMF 165 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~f 165 (216)
..-|| .|...+..... .....|+.||..|
T Consensus 8 iL~CP--~ck~~L~~~~~--~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACP--ICKGPLKLSAD--KTELISKGAGLAY 36 (69)
T ss_dssp TCCCT--TTCCCCEECTT--SSEEEETTTTEEE
T ss_pred heeCC--CCCCcCeEeCC--CCEEEcCCCCcEe
Confidence 45688 67777766432 3457787777655
No 130
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=28.13 E-value=31 Score=21.36 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=17.1
Q ss_pred cCCCCcccCcCCCCceeecCCCCCCCceeCCCCch
Q 041841 129 NGAEKFYCPFKDCSALLINDGLKNMKESKRPYCKR 163 (216)
Q Consensus 129 ~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~ 163 (216)
..+++..|| .|+.+... ...|+.||+
T Consensus 26 ~~p~l~~c~--~cGe~~~~-------H~vc~~CG~ 51 (60)
T 3v2d_5 26 TPPTLVPCP--ECKAMKPP-------HTVCPECGY 51 (60)
T ss_dssp CCCCCEECT--TTCCEECT-------TSCCTTTCE
T ss_pred cCCceeECC--CCCCeecc-------eEEcCCCCc
Confidence 345677888 68876633 345888874
No 131
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=27.74 E-value=48 Score=20.15 Aligned_cols=28 Identities=21% Similarity=0.509 Sum_probs=16.5
Q ss_pred CcccCcCCCCc-eeecCCCCCCCceeCCCCchh
Q 041841 133 KFYCPFKDCSA-LLINDGLKNMKESKRPYCKRM 164 (216)
Q Consensus 133 ~~~Cp~~~C~~-~~~~~~~~~~~~~~C~~C~~~ 164 (216)
...|| .|+. -+..+. ....+.|..||..
T Consensus 11 ~~~Cp--~C~~~~lv~D~--~~ge~vC~~CGlV 39 (58)
T 1dl6_A 11 RVTCP--NHPDAILVEDY--RAGDMICPECGLV 39 (58)
T ss_dssp CCSBT--TBSSSCCEECS--SSCCEECTTTCCE
T ss_pred cccCc--CCCCCceeEeC--CCCeEEeCCCCCE
Confidence 34798 6765 343432 2345788888764
No 132
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=27.62 E-value=11 Score=21.82 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=21.1
Q ss_pred CceeCCCCchhccccCCCCCCCCCCh
Q 041841 154 KESKRPYCKRMFCAQCKVPWHAGMRC 179 (216)
Q Consensus 154 ~~~~C~~C~~~fC~~C~~~~H~~~~C 179 (216)
..+.|..|+...|..|....|.++.-
T Consensus 17 l~lfC~~~~~~iC~~C~~~~H~~H~~ 42 (50)
T 2yvr_A 17 LVLFCESCDTLTCRDCQLNAHKDHQY 42 (50)
T ss_dssp CCEEETTTTEEECHHHHHTTTTTCCE
T ss_pred EEEEeCCCCEEEecccCCCcCCCCce
Confidence 45789999999999998777887653
No 133
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=27.57 E-value=78 Score=23.11 Aligned_cols=33 Identities=24% Similarity=0.751 Sum_probs=26.2
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYVD 96 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~~ 96 (216)
...|.+|.+. .+++.-..|...||..|+..-+.
T Consensus 63 ~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~ 95 (142)
T 2lbm_A 63 DEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLG 95 (142)
T ss_dssp BCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTC
T ss_pred CCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCC
Confidence 4689999974 45566678999999999997763
No 134
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=27.54 E-value=29 Score=22.17 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=18.7
Q ss_pred CcccCcCCCCceeecCCCCCCCceeCCCCchhc
Q 041841 133 KFYCPFKDCSALLINDGLKNMKESKRPYCKRMF 165 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~f 165 (216)
..-|| .|...+..... .....|+.||..|
T Consensus 8 iL~CP--~ck~~L~~~~~--~~~LiC~~cg~~Y 36 (70)
T 2js4_A 8 ILVCP--VCKGRLEFQRA--QAELVCNADRLAF 36 (70)
T ss_dssp CCBCT--TTCCBEEEETT--TTEEEETTTTEEE
T ss_pred heECC--CCCCcCEEeCC--CCEEEcCCCCcee
Confidence 45788 68877766532 3457787777655
No 135
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=27.38 E-value=34 Score=21.48 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=18.9
Q ss_pred cccCcCCCCceeecCCCCCCCceeCCCCchhc
Q 041841 134 FYCPFKDCSALLINDGLKNMKESKRPYCKRMF 165 (216)
Q Consensus 134 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~f 165 (216)
-.|. +|+.-+.... ...+.|+.||..+
T Consensus 22 Y~C~--~Cg~~~~l~~---~~~iRC~~CG~RI 48 (63)
T 3h0g_L 22 YLCA--DCGARNTIQA---KEVIRCRECGHRV 48 (63)
T ss_dssp CBCS--SSCCBCCCCS---SSCCCCSSSCCCC
T ss_pred EECC--CCCCeeecCC---CCceECCCCCcEE
Confidence 4577 7888775542 3558899999754
No 136
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=27.15 E-value=17 Score=25.94 Aligned_cols=34 Identities=26% Similarity=0.595 Sum_probs=23.6
Q ss_pred cccCcCCCCceeecCCCCCCCceeCCCCchhccccCCCCC
Q 041841 134 FYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKVPW 173 (216)
Q Consensus 134 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 173 (216)
..|. .|+..+.. ..+.-.|-.||..||..|....
T Consensus 20 ~~C~--~C~~~Fs~----~~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 20 PSCK--SCGAHFAN----TARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp CCCT--TTCCCCSS----GGGCEECTTTCCEECGGGEEC-
T ss_pred Cccc--CcCCcccc----ccccccCCCCCCeeCHHHhCCC
Confidence 4566 67766532 1356789999999999997643
No 137
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=27.07 E-value=22 Score=20.08 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=10.0
Q ss_pred CCceecCCCCccC
Q 041841 204 KKWKRCPHCNYSV 216 (216)
Q Consensus 204 ~~~k~CP~C~~~I 216 (216)
.....||+|+..|
T Consensus 7 ~~~~~C~~C~~~i 19 (39)
T 2i5o_A 7 EDQVPCEKCGSLV 19 (39)
T ss_dssp CCEEECTTTCCEE
T ss_pred CCCcccccccCcC
Confidence 4567899999764
No 138
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=26.59 E-value=29 Score=22.03 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=17.4
Q ss_pred CcccCcCCCCceeecCCCCCCCceeCCCCchhc
Q 041841 133 KFYCPFKDCSALLINDGLKNMKESKRPYCKRMF 165 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~f 165 (216)
..-|| .|...+..... .....|+.||..|
T Consensus 8 iL~CP--~ck~~L~~~~~--~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 8 ILVCP--VTKGRLEYHQD--KQELWSRQAKLAY 36 (68)
T ss_dssp CCBCS--SSCCBCEEETT--TTEEEETTTTEEE
T ss_pred heECC--CCCCcCeEeCC--CCEEEcCCCCcEe
Confidence 45788 67776665432 2446676666554
No 139
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=26.57 E-value=29 Score=25.69 Aligned_cols=32 Identities=19% Similarity=0.499 Sum_probs=19.0
Q ss_pred CcccCcCCC-C------ceeecCCCCCCCceeCCCCchhc
Q 041841 133 KFYCPFKDC-S------ALLINDGLKNMKESKRPYCKRMF 165 (216)
Q Consensus 133 ~~~Cp~~~C-~------~~~~~~~~~~~~~~~C~~C~~~f 165 (216)
...||+|+| . ..+.... ......+|.+|++.|
T Consensus 105 vl~C~Np~CITn~E~v~s~F~v~~-~~~~~lrC~YCe~~~ 143 (149)
T 2yww_A 105 TLKCTNPNCITNKEKVRGKFKIES-KNPLKIRCYYCEKFL 143 (149)
T ss_dssp SSCCSCTTSGGGTSCCCCEEEEEE-ETTEEEEETTTCCBC
T ss_pred eEEcCCCCCCcCCcccccEEEEEe-CCCCEEEeeCCCcCh
Confidence 458999999 3 2222211 113347899888764
No 140
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.38 E-value=32 Score=27.04 Aligned_cols=20 Identities=20% Similarity=0.722 Sum_probs=16.8
Q ss_pred CCceeCCCCchhccccCCCC
Q 041841 153 MKESKRPYCKRMFCAQCKVP 172 (216)
Q Consensus 153 ~~~~~C~~C~~~fC~~C~~~ 172 (216)
.+.-.|..||..||..|...
T Consensus 178 ~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 178 TRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp BCCEECTTTCCEECTTTCCE
T ss_pred ccccccCCCcCEeChhhcCC
Confidence 45678999999999999763
No 141
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=26.20 E-value=24 Score=16.47 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=7.4
Q ss_pred eeCCCCchhcc
Q 041841 156 SKRPYCKRMFC 166 (216)
Q Consensus 156 ~~C~~C~~~fC 166 (216)
..|+.|+..|-
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 46777777663
No 142
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=26.16 E-value=40 Score=20.83 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=16.4
Q ss_pred cCCCCcccCcCCCCceeecCCCCCCCceeCCCCch
Q 041841 129 NGAEKFYCPFKDCSALLINDGLKNMKESKRPYCKR 163 (216)
Q Consensus 129 ~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~ 163 (216)
..+++..|| .|+.... +...|+.||+
T Consensus 26 ~~p~l~~c~--~cG~~~~-------pH~vc~~CG~ 51 (60)
T 2zjr_Z 26 TAPNLTECP--QCHGKKL-------SHHICPNCGY 51 (60)
T ss_dssp CCCCCEECT--TTCCEEC-------TTBCCTTTCB
T ss_pred cCCCceECC--CCCCEeC-------CceEcCCCCc
Confidence 345577787 6777742 2356777774
No 143
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=26.13 E-value=29 Score=22.04 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=18.1
Q ss_pred CcccCcCCCCceeecCCCCCCCceeCCCCchhc
Q 041841 133 KFYCPFKDCSALLINDGLKNMKESKRPYCKRMF 165 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~f 165 (216)
..-|| .|...+..... .....|+.||..|
T Consensus 8 iL~CP--~ck~~L~~~~~--~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCP--LCKGPLVFDKS--KDELICKGDRLAF 36 (68)
T ss_dssp ECBCT--TTCCBCEEETT--TTEEEETTTTEEE
T ss_pred heECC--CCCCcCeEeCC--CCEEEcCCCCcEe
Confidence 34688 67776665432 3456777777655
No 144
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=25.84 E-value=69 Score=23.01 Aligned_cols=32 Identities=25% Similarity=0.774 Sum_probs=24.8
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIVKYV 95 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~~y~ 95 (216)
...|.||.+. .+++--..|...||..|+...+
T Consensus 57 ~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~l 88 (129)
T 3ql9_A 57 DEQCRWCAEG---GNLICCDFCHNAFCKKCILRNL 88 (129)
T ss_dssp BSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHT
T ss_pred CCcCeecCCC---CeeEecCCCchhhhHHHhCCCc
Confidence 4579999974 4455556889999999999864
No 145
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.81 E-value=25 Score=16.40 Aligned_cols=11 Identities=36% Similarity=0.766 Sum_probs=7.4
Q ss_pred eeCCCCchhcc
Q 041841 156 SKRPYCKRMFC 166 (216)
Q Consensus 156 ~~C~~C~~~fC 166 (216)
..|+.|+..|=
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 56777777654
No 146
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.65 E-value=33 Score=21.60 Aligned_cols=36 Identities=22% Similarity=0.451 Sum_probs=23.0
Q ss_pred cccCcCCCCceeecCCCCCCCceeCCCCchhccccCCCCCCCCCChH
Q 041841 134 FYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKVPWHAGMRCE 180 (216)
Q Consensus 134 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~~~~C~ 180 (216)
..|. .|..-+.. ..+.| .||..||...+-+ +.+.|.
T Consensus 16 ~rC~--~C~kkvgl------~~f~C-rCg~~FC~~HR~~--e~H~C~ 51 (64)
T 1wg2_A 16 NRCF--SCNKKVGV------MGFKC-KCGSTFCGSHRYP--EKHECS 51 (64)
T ss_dssp CSCT--TTCCCCTT------SCEEC-TTSCEECSSSCSS--TTTTCC
T ss_pred CcCh--hhCCcccc------cCeEe-ecCCEecccCCCc--cccCCC
Confidence 4565 67665422 24789 6999999987653 234564
No 147
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.39 E-value=15 Score=16.98 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=7.9
Q ss_pred eeCCCCchhcccc
Q 041841 156 SKRPYCKRMFCAQ 168 (216)
Q Consensus 156 ~~C~~C~~~fC~~ 168 (216)
..|+.||+.|=..
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 3577777766543
No 148
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.28 E-value=21 Score=16.71 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=6.9
Q ss_pred eeCCCCchhc
Q 041841 156 SKRPYCKRMF 165 (216)
Q Consensus 156 ~~C~~C~~~f 165 (216)
..|+.||+.|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvg_A 4 YRCPLCRAGC 13 (27)
T ss_dssp EEETTTTEEE
T ss_pred cCCCCCCccc
Confidence 5677777765
No 149
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.97 E-value=23 Score=16.49 Aligned_cols=10 Identities=30% Similarity=0.477 Sum_probs=5.8
Q ss_pred eeCCCCchhc
Q 041841 156 SKRPYCKRMF 165 (216)
Q Consensus 156 ~~C~~C~~~f 165 (216)
..|+.|+..|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 3466666654
No 150
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=24.02 E-value=54 Score=20.66 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=23.9
Q ss_pred CCCcccccCCCCCCceeeCCCCCccchHHHH
Q 041841 62 RPFSICMEPKSTNELFSIEFCSYSYCTDCIV 92 (216)
Q Consensus 62 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~ 92 (216)
..|.||........|+.-..|.-.|...|+.
T Consensus 19 ~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~ 49 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCDDCDDWYHWPCVG 49 (75)
T ss_dssp ECBTTTTBCCSSCCEEECSSSSSEEEHHHHT
T ss_pred cCCCCCCCCCCCCCEEEcCCCCcccccccCC
Confidence 4699998876655677667888888888875
No 151
>4fyy_B Aspartate carbamoyltransferase regulatory chain; pyrimidine nucleotide biosynthesis, feedback inhibition, all transferase; HET: UTP CTP; 1.94A {Escherichia coli} PDB: 1ezz_B 1f1b_B* 1i5o_B* 1q95_G* 1r0b_G* 1r0c_B* 1raa_B* 1rab_B* 1rac_B* 1rad_B* 1rae_B* 1raf_B* 1rag_B* 1rah_B* 1rai_B* 1sku_B 1tth_B* 1tu0_B 1tug_B* 1xjw_B* ...
Probab=23.65 E-value=38 Score=25.16 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=19.5
Q ss_pred CcccCcCCCCceeecCC-------CCCCCceeCCCCchhc
Q 041841 133 KFYCPFKDCSALLINDG-------LKNMKESKRPYCKRMF 165 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~~-------~~~~~~~~C~~C~~~f 165 (216)
.+.||+|+|-.-..... .......+|.+|.+.|
T Consensus 106 vi~C~Np~CIT~~E~v~~~f~v~~~~~~~~~rC~YCe~~~ 145 (153)
T 4fyy_B 106 VLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEF 145 (153)
T ss_dssp SCCCSCTTBTTTTSSCCCEEEEEECSSSEEEEETTTCCEE
T ss_pred eEECCCCCcccCCCCCCCEEEEEEcCCCCEEEeeCCCCEe
Confidence 46899999964321110 0112347899888765
No 152
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.63 E-value=25 Score=16.26 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=6.9
Q ss_pred eeCCCCchhcc
Q 041841 156 SKRPYCKRMFC 166 (216)
Q Consensus 156 ~~C~~C~~~fC 166 (216)
..|+.|+..|-
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 35777776654
No 153
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=23.38 E-value=29 Score=25.17 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=19.0
Q ss_pred CCcccCcCCCCceeecCCCCCCCceeCCCCchhc
Q 041841 132 EKFYCPFKDCSALLINDGLKNMKESKRPYCKRMF 165 (216)
Q Consensus 132 ~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~f 165 (216)
.+--|| .|+.-+-+.. .....||.|+..+
T Consensus 26 ~lP~CP--~C~seytYeD---g~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCP--QCNSEYTYED---GALLVCPECAHEW 54 (138)
T ss_dssp CSCCCT--TTCCCCCEEC---SSSEEETTTTEEE
T ss_pred cCCCCC--CCCCcceEec---CCeEECCcccccc
Confidence 355788 6776665543 3457888888764
No 154
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.19 E-value=39 Score=21.24 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=22.9
Q ss_pred cccCcCCCCceeecCCCCCCCceeCCCCchhccccCCCCCCCCCChH
Q 041841 134 FYCPFKDCSALLINDGLKNMKESKRPYCKRMFCAQCKVPWHAGMRCE 180 (216)
Q Consensus 134 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~~~~C~ 180 (216)
..|. .|..-+.. ..+.| .||..||...+-+ +.+.|.
T Consensus 16 ~rC~--~C~kkvgl------~~f~C-rCg~~FC~~HRy~--e~H~C~ 51 (64)
T 1wfh_A 16 NRCT--VCRKRVGL------TGFMC-RCGTTFCGSHRYP--EVHGCT 51 (64)
T ss_dssp CCCT--TTCCCCCT------TCEEC-SSSCEECTTTCST--TTTTCC
T ss_pred CcCh--hhCCccCc------cCEEe-ecCCEeccccCCc--ccCCCC
Confidence 4565 57665422 24789 5999999987653 234564
No 155
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.13 E-value=28 Score=16.05 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=6.7
Q ss_pred eeCCCCchhcc
Q 041841 156 SKRPYCKRMFC 166 (216)
Q Consensus 156 ~~C~~C~~~fC 166 (216)
..|+.|+..|-
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 45776776553
No 156
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=23.10 E-value=21 Score=18.35 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=14.0
Q ss_pred hccccCCCCCCCCCChHh
Q 041841 164 MFCAQCKVPWHAGMRCEK 181 (216)
Q Consensus 164 ~fC~~C~~~~H~~~~C~~ 181 (216)
.-||.|+.+-|....|..
T Consensus 7 ~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CBCTTTSCBSSCGGGCCS
T ss_pred CEEEECCccccCHhHCcc
Confidence 358889999998877764
No 157
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.64 E-value=40 Score=26.91 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHh-hh--cCCCCcccCcCCCCceeecCCC----CCCCceeCCCCchhc
Q 041841 110 IVPKEVSDRWGNALCEG-VI--NGAEKFYCPFKDCSALLINDGL----KNMKESKRPYCKRMF 165 (216)
Q Consensus 110 ~l~~~~~~~y~~~~~~~-~v--~~~~~~~Cp~~~C~~~~~~~~~----~~~~~~~C~~C~~~f 165 (216)
-++++++..|.+..... -+ -.-...-|- +|...+..... .....+.||+||+..
T Consensus 172 ~i~~~lL~~Yerir~~~~g~avv~v~~~~C~--GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL 232 (256)
T 3na7_A 172 KTEPKIYSFYERIRRWAKNTSIVTIKKQACG--GCFIRLNDKIYTEVLTSGDMITCPYCGRIL 232 (256)
T ss_dssp TSCHHHHHHHHHHHHHHGGGSEEECBTTBCT--TTCCBCCHHHHHHHHHSSSCEECTTTCCEE
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEeeCCccC--CCCeeeCHHHHHHHHCCCCEEECCCCCeeE
Confidence 47899999999876532 11 111234576 78877744311 123468999998754
No 158
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.37 E-value=26 Score=16.47 Aligned_cols=11 Identities=27% Similarity=0.507 Sum_probs=6.7
Q ss_pred eeCCCCchhcc
Q 041841 156 SKRPYCKRMFC 166 (216)
Q Consensus 156 ~~C~~C~~~fC 166 (216)
..|+.|+..|=
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 35777776653
No 159
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.37 E-value=35 Score=16.76 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=9.1
Q ss_pred CceeCCCCchhcc
Q 041841 154 KESKRPYCKRMFC 166 (216)
Q Consensus 154 ~~~~C~~C~~~fC 166 (216)
+...|+.|++.|=
T Consensus 6 k~~~C~~C~k~f~ 18 (35)
T 2elx_A 6 SGYVCALCLKKFV 18 (35)
T ss_dssp CSEECSSSCCEES
T ss_pred CCeECCCCcchhC
Confidence 3467888887664
No 160
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.21 E-value=27 Score=15.94 Aligned_cols=10 Identities=40% Similarity=0.747 Sum_probs=5.9
Q ss_pred eCCCCchhcc
Q 041841 157 KRPYCKRMFC 166 (216)
Q Consensus 157 ~C~~C~~~fC 166 (216)
.|+.|++.|=
T Consensus 3 ~C~~C~k~f~ 12 (27)
T 1znf_A 3 KCGLCERSFV 12 (27)
T ss_dssp BCSSSCCBCS
T ss_pred cCCCCCCcCC
Confidence 4666666553
No 161
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.11 E-value=34 Score=17.25 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=9.2
Q ss_pred CceeCCCCchhcc
Q 041841 154 KESKRPYCKRMFC 166 (216)
Q Consensus 154 ~~~~C~~C~~~fC 166 (216)
+...|+.|++.|-
T Consensus 10 k~~~C~~C~k~f~ 22 (37)
T 1p7a_A 10 KPFQCPDCDRSFS 22 (37)
T ss_dssp SSBCCTTTCCCBS
T ss_pred CCccCCCCCcccC
Confidence 3467888887764
No 162
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=21.72 E-value=1.2e+02 Score=20.69 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=23.6
Q ss_pred CCCCcccccCC------CCCCceeeCCCCCccchHHHH
Q 041841 61 KRPFSICMEPK------STNELFSIEFCSYSYCTDCIV 92 (216)
Q Consensus 61 ~~~C~IC~~~~------~~~~~~~~~~C~H~fC~~C~~ 92 (216)
...|.+|.... ..++++.-..|+..|...|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 45799998763 234666667899888888885
No 163
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.71 E-value=38 Score=16.91 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=9.6
Q ss_pred CceeCCCCchhcc
Q 041841 154 KESKRPYCKRMFC 166 (216)
Q Consensus 154 ~~~~C~~C~~~fC 166 (216)
+...|+.|++.|-
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2els_A 8 KIFTCEYCNKVFK 20 (36)
T ss_dssp CCEECTTTCCEES
T ss_pred CCEECCCCCceeC
Confidence 4578888888764
No 164
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.46 E-value=41 Score=21.29 Aligned_cols=29 Identities=10% Similarity=-0.015 Sum_probs=17.9
Q ss_pred CcccCcCCCCceeecCCCCCCCceeCCCCchhc
Q 041841 133 KFYCPFKDCSALLINDGLKNMKESKRPYCKRMF 165 (216)
Q Consensus 133 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~f 165 (216)
..-|| .|...+..... .....|+.|+..|
T Consensus 10 iL~CP--~ck~~L~~~~~--~g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACP--KDKGPLRYLES--EQLLVNERLNLAY 38 (67)
T ss_dssp CCBCT--TTCCBCEEETT--TTEEEETTTTEEE
T ss_pred HhCCC--CCCCcCeEeCC--CCEEEcCCCCccc
Confidence 45688 67776655432 3456777777655
No 165
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=21.43 E-value=43 Score=18.08 Aligned_cols=17 Identities=29% Similarity=0.724 Sum_probs=14.0
Q ss_pred ccccCCCCCCCCCChHh
Q 041841 165 FCAQCKVPWHAGMRCEK 181 (216)
Q Consensus 165 fC~~C~~~~H~~~~C~~ 181 (216)
.|+.|++..|....|..
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 58899999998888864
No 166
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=21.31 E-value=30 Score=16.10 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=5.4
Q ss_pred eCCCCchhc
Q 041841 157 KRPYCKRMF 165 (216)
Q Consensus 157 ~C~~C~~~f 165 (216)
.|+.|+..|
T Consensus 4 ~C~~C~k~f 12 (30)
T 1klr_A 4 QCQYCEFRS 12 (30)
T ss_dssp CCSSSSCCC
T ss_pred cCCCCCCcc
Confidence 466666654
No 167
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=21.22 E-value=61 Score=22.19 Aligned_cols=33 Identities=27% Similarity=0.827 Sum_probs=20.2
Q ss_pred cccCcCCCCceeecCCCCCCCceeCCCCchh-----ccccCCCC
Q 041841 134 FYCPFKDCSALLINDGLKNMKESKRPYCKRM-----FCAQCKVP 172 (216)
Q Consensus 134 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~-----fC~~C~~~ 172 (216)
..|| .|+..+...+ ....|..|+.. +|..|..+
T Consensus 33 ~~CP--~Cq~eL~~~g----~~~hC~~C~~~f~~~a~CPdC~q~ 70 (101)
T 2jne_A 33 LHCP--QCQHVLDQDN----GHARCRSCGEFIEMKALCPDCHQP 70 (101)
T ss_dssp CBCS--SSCSBEEEET----TEEEETTTCCEEEEEEECTTTCSB
T ss_pred ccCc--cCCCcceecC----CEEECccccchhhccccCcchhhH
Confidence 5788 8998876643 24456666654 35555443
No 168
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Probab=20.87 E-value=52 Score=24.80 Aligned_cols=32 Identities=16% Similarity=0.396 Sum_probs=18.6
Q ss_pred CcccCcCCC-Cce-------eecCCCCCCCceeCCCCchhc
Q 041841 133 KFYCPFKDC-SAL-------LINDGLKNMKESKRPYCKRMF 165 (216)
Q Consensus 133 ~~~Cp~~~C-~~~-------~~~~~~~~~~~~~C~~C~~~f 165 (216)
...||+|.| .+. +.... ......+|.+|++.|
T Consensus 114 vl~C~Np~CITn~~~Epvs~F~v~~-~~~~~lrC~YCe~~~ 153 (168)
T 1pg5_B 114 ILKCPNPYCITSNDVEAIPTFKTLT-EKPLKMRCEYCETII 153 (168)
T ss_dssp SSCCSCTTBGGGTCTTSCCEEEEEE-TTTTEEEETTTCCEE
T ss_pred eEEcCCCCcccCCCCccccEEEEEc-CCCCEEEeeCCCCEe
Confidence 468999999 321 11111 113457888888754
No 169
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=20.53 E-value=26 Score=20.53 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=20.4
Q ss_pred CceeCCCCchhccccCCC-CCCCCCC
Q 041841 154 KESKRPYCKRMFCAQCKV-PWHAGMR 178 (216)
Q Consensus 154 ~~~~C~~C~~~fC~~C~~-~~H~~~~ 178 (216)
..+.|..|+...|..|.. .-|.+++
T Consensus 18 l~lfC~~d~~~iC~~C~~~~~H~~H~ 43 (53)
T 2did_A 18 LSLFCYEDQEAVCLICAISHTHRAHT 43 (53)
T ss_dssp CCEEESSSCSEECHHHHTSSTTTTSC
T ss_pred eeEEeCCCCeEEeccccCCCCCCCCc
Confidence 357899999999999986 6787765
No 170
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.48 E-value=40 Score=17.18 Aligned_cols=13 Identities=8% Similarity=-0.118 Sum_probs=9.7
Q ss_pred CceeCCCCchhcc
Q 041841 154 KESKRPYCKRMFC 166 (216)
Q Consensus 154 ~~~~C~~C~~~fC 166 (216)
+...|+.|++.|-
T Consensus 8 k~~~C~~C~k~f~ 20 (37)
T 2elm_A 8 HLYYCSQCHYSSI 20 (37)
T ss_dssp CEEECSSSSCEEE
T ss_pred cCeECCCCCcccC
Confidence 4578988888774
No 171
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=20.45 E-value=55 Score=22.37 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=24.1
Q ss_pred CCCCcccccCCCCCCceeeCCCCCccchHHHH
Q 041841 61 KRPFSICMEPKSTNELFSIEFCSYSYCTDCIV 92 (216)
Q Consensus 61 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~C~~ 92 (216)
...|.||.+.....+++.-..|...|...|+.
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~ 38 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLD 38 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTTTTT
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChHHhC
Confidence 56899999887666666667888888777764
No 172
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.39 E-value=41 Score=16.91 Aligned_cols=13 Identities=38% Similarity=0.830 Sum_probs=9.3
Q ss_pred CceeCCCCchhcc
Q 041841 154 KESKRPYCKRMFC 166 (216)
Q Consensus 154 ~~~~C~~C~~~fC 166 (216)
+...|+.|++.|=
T Consensus 8 k~~~C~~C~k~f~ 20 (37)
T 2elp_A 8 RAMKCPYCDFYFM 20 (37)
T ss_dssp CCEECSSSSCEEC
T ss_pred CCeECCCCChhhc
Confidence 4478888887763
No 173
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=20.38 E-value=42 Score=16.55 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=9.7
Q ss_pred CceeCCCCchhccc
Q 041841 154 KESKRPYCKRMFCA 167 (216)
Q Consensus 154 ~~~~C~~C~~~fC~ 167 (216)
+...|+.|++.|=.
T Consensus 6 k~~~C~~C~k~f~~ 19 (35)
T 1srk_A 6 RPFVCRICLSAFTT 19 (35)
T ss_dssp SCEECSSSCCEESS
T ss_pred cCeeCCCCCcccCC
Confidence 34678888887643
No 174
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=20.35 E-value=19 Score=20.67 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=19.8
Q ss_pred CceeCCCCchhccccCC-CCCCCCCC
Q 041841 154 KESKRPYCKRMFCAQCK-VPWHAGMR 178 (216)
Q Consensus 154 ~~~~C~~C~~~fC~~C~-~~~H~~~~ 178 (216)
..+.|..|+...|..|. ...|.+++
T Consensus 17 l~lfC~~d~~~iC~~C~~~~~H~~H~ 42 (48)
T 3ddt_A 17 INIYCLTCEVPTCSMCKVFGIHKACE 42 (48)
T ss_dssp CCEEETTTTEEECHHHHHHSTTTTSC
T ss_pred ccEEcCCCCeeEcccccCCCcCCCCc
Confidence 35789999999999997 45687764
No 175
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=20.34 E-value=20 Score=22.57 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=23.1
Q ss_pred CceeCCCCchhccccCCCCCCCCCChHhH
Q 041841 154 KESKRPYCKRMFCAQCKVPWHAGMRCEKF 182 (216)
Q Consensus 154 ~~~~C~~C~~~fC~~C~~~~H~~~~C~~~ 182 (216)
..+.|..|+...|..|....|.+++-..+
T Consensus 28 l~lfC~~d~~~iC~~C~~~~H~~H~~~~l 56 (72)
T 2csv_A 28 MELFCQTDQTCICYLCMFQEHKNHSTVTV 56 (72)
T ss_dssp CCEEESSSCCEECHHHHHTTTSSSCEEEH
T ss_pred eEEEeCCCCeEEccccCCCCCCCCCEecH
Confidence 35789999999999998878988765443
No 176
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=20.26 E-value=52 Score=21.64 Aligned_cols=20 Identities=30% Similarity=0.710 Sum_probs=14.9
Q ss_pred hhccccCCCCCCCCCChHhH
Q 041841 163 RMFCAQCKVPWHAGMRCEKF 182 (216)
Q Consensus 163 ~~fC~~C~~~~H~~~~C~~~ 182 (216)
..+|+.|+..-|....|.+.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG
T ss_pred cCCCCCCCCCCCccccCCCc
Confidence 46788888888988888764
No 177
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.17 E-value=42 Score=16.64 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=9.2
Q ss_pred CceeCCCCchhcc
Q 041841 154 KESKRPYCKRMFC 166 (216)
Q Consensus 154 ~~~~C~~C~~~fC 166 (216)
+...|+.|++.|=
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2elt_A 8 KPYKCPQCSYASA 20 (36)
T ss_dssp CSEECSSSSCEES
T ss_pred CCCCCCCCCcccC
Confidence 4477888887663
No 178
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.05 E-value=42 Score=16.73 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=9.4
Q ss_pred CceeCCCCchhcc
Q 041841 154 KESKRPYCKRMFC 166 (216)
Q Consensus 154 ~~~~C~~C~~~fC 166 (216)
+...|+.|+..|=
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2elq_A 8 KPFKCSLCEYATR 20 (36)
T ss_dssp CSEECSSSSCEES
T ss_pred CCccCCCCCchhC
Confidence 4578888887764
No 179
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=25.35 E-value=22 Score=16.74 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=8.6
Q ss_pred eeCCCCchhcccc
Q 041841 156 SKRPYCKRMFCAQ 168 (216)
Q Consensus 156 ~~C~~C~~~fC~~ 168 (216)
..|+.|++.|-..
T Consensus 4 ~~C~~C~k~f~~~ 16 (30)
T 2lvr_A 4 YVCIHCQRQFADP 16 (30)
Confidence 4677788776543
Done!