BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041843
(800 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 16/143 (11%)
Query: 409 TEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLT----LFLNDNPLRTITGGFFQSM 464
+ PAD + +L L N + +LP+ H LT L+LNDN L+T+ G F+ +
Sbjct: 33 SNIPADTK------KLDLQSNKLSSLPS--KAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84
Query: 465 PCLTVLKMSDNIMLRQLPTGI-SKLVSLQLLDISYTSVTGLPEGL-KALVNLKCLNLDWA 522
L L ++DN L+ LP G+ +LV+L L + + LP + +L L L+L +
Sbjct: 85 KNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY- 142
Query: 523 DELVEVPQQLLSNFSRLRVLRMF 545
+EL +P+ + + L+ LR++
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLY 165
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 422 RRLSLMKNSIGNLPT--VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLR 479
R L L N + LP +L TL++ DN L+ + G F + L L++ N +
Sbjct: 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123
Query: 480 QLPTGISKLVSLQLLDISYTSVTGLPEGL-KALVNLKCLNLDWADELVEVPQQLLSNFSR 538
P L L L + Y + LP+G+ L +LK L L + ++L VP+ +
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTE 182
Query: 539 LRVLRM 544
L+ L++
Sbjct: 183 LKTLKL 188
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 424 LSLMKNSIGNLPT--VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL 481
L L N + +LP +L L L +N L+++ G F + LT L ++ N L+ L
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSL 148
Query: 482 PTGI-SKLVSLQLLDISYTSVTGLPEGL-KALVNLKCLNLDWADELVEVPQQLLSNFSRL 539
P G+ KL +L LD+SY + LPEG+ L LK L L + ++L VP + + L
Sbjct: 149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL-YQNQLKSVPDGVFDRLTSL 207
Query: 540 RVL 542
+ +
Sbjct: 208 QYI 210
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 407 GLTEAPADVRGWEMGRRLSLMKNSIGNLPT--VPTCPHLLTLFLNDNPLRTITGGFFQSM 464
G T P + L L NS+ +LP L L+L N L+++ G F +
Sbjct: 18 GRTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL 75
Query: 465 PCLTVLKMSDNIMLRQLPTGI-SKLVSLQLLDISYTSVTGLPEGL-KALVNLKCLNLDWA 522
LT L +S N L+ LP G+ KL L+ L ++ + LP+G+ L LK L L +
Sbjct: 76 TSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL-YQ 133
Query: 523 DELVEVPQQLLSNFSRLRVL 542
++L VP + + L+ +
Sbjct: 134 NQLKSVPDGVFDRLTSLQYI 153
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 446 LFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGI-SKLVSLQLLDISYTSVTGL 504
L+L N L + G F S+ LTVL + N L LP+ + +LV L+ L + +T L
Sbjct: 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLTEL 127
Query: 505 PEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFA 546
P G++ L +L L LD ++L +P S L +F
Sbjct: 128 PRGIERLTHLTHLALD-QNQLKSIPHGAFDRLSSLTHAYLFG 168
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 446 LFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGI-SKLVSLQLLDISYTSVTGL 504
L+L+DN + + G F S+ L L + N L LP G+ L L +LD+ +T L
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 505 PEGL-KALVNLKCLNLDWADELVEVPQQL--LSNFSRLRV--LRMFATGVGSYGRFSS 557
P + LV+LK L + ++L E+P+ + L++ + L + ++ + G++ R SS
Sbjct: 104 PSAVFDRLVHLKELFM-CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 430 SIGNLPT-VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGI-SK 487
S+ ++PT +PT +L L+ DN + + G F + LT L + DN L LP G+ K
Sbjct: 28 SLASVPTGIPTTTQVLYLY--DNQITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFDK 84
Query: 488 LVSLQLLDISYTSVTGLPEG----LKALVNLKCLNLDW 521
L L L ++ + +P G LK+L ++ LN W
Sbjct: 85 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 122
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 430 SIGNLPT-VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGI-SK 487
S+ ++PT +PT +L L+ DN + + G F + LT L + DN L LP G+ K
Sbjct: 20 SLASVPTGIPTTTQVLYLY--DNQITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFDK 76
Query: 488 LVSLQLLDISYTSVTGLPEG----LKALVNLKCLNLDW 521
L L L ++ + +P G LK+L ++ LN W
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 423 RLSLMKNSIGNLPTVPT--CPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQ 480
R + K S G+L ++P+ + +L L++N + I+ Q L L ++ N +
Sbjct: 32 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91
Query: 481 LPTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRL 539
S L SL+ LD+SY ++ L K L +L LNL L S+ ++L
Sbjct: 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151
Query: 540 RVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQ 586
++LR VG+ F+ ++ GL +LE LEI ++Y+
Sbjct: 152 QILR-----VGNMDTFTKIQ---RKDFAGLTFLEELEIDASDLQSYE 190
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 30/199 (15%)
Query: 405 GSGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSM 464
G+ LT P G + LS+ N + +LP +P+ L L+ +N L ++ +
Sbjct: 130 GNQLTSLPVLPPGLQ---ELSVSDNQLASLPALPS--ELCKLWAYNNQLTSLP-----ML 179
Query: 465 PC-LTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWAD 523
P L L +SDN L LPT S+L L + TS+ LP GLK L+ +
Sbjct: 180 PSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELI-------VSGN 231
Query: 524 ELVEVP------QQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKY-----L 572
L +P ++L+ + +RL L M +G+ S + ++ + E L+ L L
Sbjct: 232 RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNL 291
Query: 573 EVLEITFRSFEAYQTFLSS 591
E ++ R+ +A + S+
Sbjct: 292 EGNPLSERTLQALREITSA 310
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 430 SIGNLPT-VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGI-SK 487
S+ ++PT +PT +L L+ DN + + G F + LT L + DN L LP G+ K
Sbjct: 20 SLASVPTGIPTTTQVLYLY--DNRITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFDK 76
Query: 488 LVSLQLLDISYTSVTGLPEG----LKALVNLKCLNLDW 521
L L L ++ + +P G L++L ++ LN W
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPW 114
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 423 RLSLMKNSIGNLPTVPT--CPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQ 480
R + K S G+L ++P+ + +L L++N + I+ Q L L ++ N +
Sbjct: 6 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 65
Query: 481 LPTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRL 539
S L SL+ LD+SY ++ L K L +L LNL L S+ ++L
Sbjct: 66 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 125
Query: 540 RVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQ 586
++LR VG+ F+ ++ GL +LE LEI ++Y+
Sbjct: 126 QILR-----VGNMDTFTKIQ---RKDFAGLTFLEELEIDASDLQSYE 164
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 442 HLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGI-SKLVSLQLLDISYTS 500
+L L L +N L+++ G F + LT L + N L+ LP G+ KL +L LD+
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN-QLQSLPKGVFDKLTNLTRLDLDNNQ 168
Query: 501 VTGLPEGL-KALVNLKCLNLDWADELVEVPQQLLSNFSRLRVL 542
+ LPEG+ L LK L+L+ ++L VP + F RL L
Sbjct: 169 LQSLPEGVFDKLTQLKQLSLN-DNQLKSVPDGV---FDRLTSL 207
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 154 EKAQDIFKTLSKKKFA---LLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGGMEAR 210
E+A+D + L +K L+LDD+W+ LK ++ TTR V +
Sbjct: 227 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLK----AFDSQCQILLTTRDKSVTDSVMGP 282
Query: 211 RKFKV---ACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAM 267
K+ V + L E E+ V + + +P+ A ++ KEC G PL + +IG +
Sbjct: 283 -KYVVPVESSLGKEKGLEILSLFVNMKKAD----LPEQAHSIIKECKGSPLVVSLIGALL 337
Query: 268 AYKKTPEEWRYAIEVLRR 285
+ P W Y ++ L+
Sbjct: 338 --RDFPNRWEYYLKQLQN 353
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 407 GLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSM 464
GLT P + RL L N + +LP L L L+ N ++++ G F +
Sbjct: 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75
Query: 465 PCLTVLKMSDNIMLRQLPTGI-SKLVSLQLLDISYTSVTGLPEGL 508
LT+L + +N L+ LP G+ KL L+ L + + +P+G+
Sbjct: 76 TKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI 119
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 154 EKAQDIFKTLSKKKFA---LLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGGMEAR 210
E+A+D + L +K L+LDD+W+ LK ++ TTR V +
Sbjct: 221 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLK----AFDSQCQILLTTRDKSVTDSVMGP 276
Query: 211 RKFKV---ACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAM 267
K+ V + L E E+ V + + +P+ A ++ KEC G PL + +IG +
Sbjct: 277 -KYVVPVESSLGKEKGLEILSLFVNMKKAD----LPEQAHSIIKECKGSPLVVSLIGALL 331
Query: 268 AYKKTPEEWRYAIEVLR 284
+ P W Y ++ L+
Sbjct: 332 --RDFPNRWEYYLKQLQ 346
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 419 EMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476
E+G L L N + +LP L L+L N L+++ G F + L L+++ N
Sbjct: 84 ELGT-LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN- 141
Query: 477 MLRQLPTG-ISKLVSLQLLDISYTSVTGLPEG 507
L+ +P G KL +LQ L +S + +P G
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 106/265 (40%), Gaps = 55/265 (20%)
Query: 442 HLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDN---IMLRQLPTGISKLVSLQLLD--- 495
+L TL L N L+ I G F + LT L +S+N I+L + + L SL++ D
Sbjct: 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 496 --ISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYG 553
IS+ + +GL L+ L KC L +P + LS+ L VLR+ + +
Sbjct: 141 VYISHRAFSGL-NSLEQLTLEKC-------NLTSIPTEALSHLHGLIVLRLRHLNINAIR 192
Query: 554 RFSSR--------------YVNVAEE--LLGLKYLEVLEITFRSFEA----------YQT 587
+S + Y++ L GL L L IT + A Y
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLR 251
Query: 588 FLS-SQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQ 646
FL+ S S + LHE R + I + L + FR ++++ L + +
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSGNQLT- 309
Query: 647 KSRQPCVFRSLEEVTVDNCGNLKHL 671
+LEE + GNL+ L
Sbjct: 310 ---------TLEESVFHSVGNLETL 325
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 419 EMGRRLSLMKNSIGNLPTVPTCPHLLTL---FLNDNPLRTITGGFFQSMPCLTVLKMSDN 475
E+G L L N + +LP + HL L +L N L+++ G F + L L+++ N
Sbjct: 84 ELGT-LGLANNQLASLP-LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 476 IMLRQLPTG-ISKLVSLQLLDISYTSVTGLPEG 507
L+ +P G KL +LQ L +S + +P G
Sbjct: 142 -QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 422 RRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLR 479
++L + N+I LP P L L L N L ++ G F + P LT L MS+N + R
Sbjct: 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161
Query: 480 QLPTGISKLVSLQLLDISYTSVTGL 504
SLQ L +S +T +
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLTHV 186
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 463 SMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDW 521
++P L L +S N L+ LP L +L +LD+S+ +T LP G L+ L L+ L L
Sbjct: 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK- 132
Query: 522 ADELVEVPQQLLSNFSRLRVLRM 544
+EL +P LL+ +L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSL 155
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 439 TCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDIS 497
T P L TL L+ N L+++ Q++P LTVL +S N L LP G + L LQ L +
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 132
Query: 498 YTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRM 544
+ LP G L L+ L+L ++L E+P LL+ L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSL-ANNDLTELPAGLLNGLENLDTLLL 179
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 463 SMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDW 521
++P L L +S N L+ LP L +L +LD+S+ +T LP G L+ L L+ L L
Sbjct: 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK- 132
Query: 522 ADELVEVPQQLLSNFSRLRVLRM 544
+EL +P LL+ +L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSL 155
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 439 TCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDIS 497
T P L TL L+ N L+++ Q++P LTVL +S N L LP G + L LQ L +
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 132
Query: 498 YTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRM 544
+ LP G L L+ L+L ++L E+P LL+ L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLL 179
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 446 LFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDISYTSVTGL 504
L+L N L+T+ G P L L +++N L +LP G ++ L +L L + S+ +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 505 PEG 507
P+G
Sbjct: 188 PKG 190
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 463 SMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDW 521
++P L L +S N L+ LP L +L +LD+S+ +T LP G L+ L L+ L L
Sbjct: 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK- 132
Query: 522 ADELVEVPQQLLSNFSRLRVLRM 544
+EL +P LL+ +L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSL 155
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 439 TCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDIS 497
T P L TL L+ N L+++ Q++P LTVL +S N L LP G + L LQ L +
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 132
Query: 498 YTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRM 544
+ LP G L L+ L+L ++L E+P LL+ L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLL 179
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 446 LFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDISYTSVTGL 504
L+L N L+T+ G P L L +++N L +LP G ++ L +L L + S+ +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 505 PEG 507
P+G
Sbjct: 188 PKG 190
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 463 SMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDW 521
++P L L +S N L+ LP L +L +LD+S+ +T LP G L+ L L+ L L
Sbjct: 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK- 132
Query: 522 ADELVEVPQQLLSNFSRLRVLRM 544
+EL +P LL+ +L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSL 155
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 439 TCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDIS 497
T P L TL L+ N L+++ Q++P LTVL +S N L LP G + L LQ L +
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 132
Query: 498 YTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRM 544
+ LP G L L+ L+L + L E+P LL+ L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSL-ANNNLTELPAGLLNGLENLDTLLL 179
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 463 SMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDW 521
++P L L +S N L+ LP L +L +LD+S+ +T LP G L+ L L+ L L
Sbjct: 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK- 132
Query: 522 ADELVEVPQQLLSNFSRLRVLRM 544
+EL +P LL+ +L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSL 155
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 439 TCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDIS 497
T P L TL L+ N L+++ Q++P LTVL +S N L LP G + L LQ L +
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 132
Query: 498 YTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRM 544
+ LP G L L+ L+L + L E+P LL+ L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSL-ANNNLTELPAGLLNGLENLDTLLL 179
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 463 SMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDW 521
++P L L +S N L+ LP L +L +LD+S+ +T LP G L+ L L+ L L
Sbjct: 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK- 132
Query: 522 ADELVEVPQQLLSNFSRLRVLRM 544
+EL +P LL+ +L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSL 155
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 439 TCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDIS 497
T P L TL L+ N L+++ Q++P LTVL +S N L LP G + L LQ L +
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 132
Query: 498 YTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRM 544
+ LP G L L+ L+L + L E+P LL+ L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSL-ANNNLTELPAGLLNGLENLDTLLL 179
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 446 LFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGI-SKLVSLQLLDISYTSVTGL 504
L+LN+N + + G F + L L + N L +PTG+ KL L LD++ + +
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 505 PEG----LKALVNLKCLNLDW 521
P G LK+L ++ N W
Sbjct: 97 PRGAFDNLKSLTHIYLYNNPW 117
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 422 RRLSLMKNSIGNL-PTV-PTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLR 479
+RL L N I L P V +L L+ N N L I G F + LT L ++DN L+
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLK 94
Query: 480 QLPTG 484
+P G
Sbjct: 95 SIPRG 99
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 463 SMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDW 521
++P L L +S N L+ LP L +L +LD+S+ +T LP G L+ L L+ L L
Sbjct: 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK- 132
Query: 522 ADELVEVPQQLLSNFSRLRVLRM 544
+EL +P LL+ +L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSL 155
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 439 TCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDIS 497
T P L TL L+ N L+++ Q++P LTVL +S N L LP G + L LQ L +
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 132
Query: 498 YTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRM 544
+ LP G L L+ L+L + L E+P LL+ L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLA-NNNLTELPAGLLNGLENLDTLLL 179
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 463 SMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDW 521
++P L L +S N L+ LP L +L +LD+S+ +T LP G L+ L L+ L L
Sbjct: 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK- 132
Query: 522 ADELVEVPQQLLSNFSRLRVLRM 544
+EL +P LL+ +L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSL 155
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 439 TCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDIS 497
T P L TL L+ N L+++ Q++P LTVL +S N L LP G + L LQ L +
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 132
Query: 498 YTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRM 544
+ LP G L L+ L+L ++L E+P LL+ L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLA-NNQLTELPAGLLNGLENLDTLLL 179
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 446 LFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDISYTSVTGL 504
L+L N L+T+ G P L L +++N L +LP G ++ L +L L + S+ +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 505 PEG 507
P+G
Sbjct: 188 PKG 190
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 463 SMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDW 521
++P L L +S N L+ LP L +L +LD+S+ +T LP G L+ L L+ L L
Sbjct: 76 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK- 133
Query: 522 ADELVEVPQQLLSNFSRLRVLRM 544
+EL +P LL+ +L L +
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSL 156
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 439 TCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDIS 497
T P L TL L+ N L+++ Q++P LTVL +S N L LP G + L LQ L +
Sbjct: 76 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 133
Query: 498 YTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRM 544
+ LP G L L+ L+L + L E+P LL+ L L +
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLA-NNNLTELPAGLLNGLENLDTLLL 180
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 463 SMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDW 521
++P L L +S N L+ LP L +L +LD+S+ +T LP G L+ L L+ L L
Sbjct: 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK- 132
Query: 522 ADELVEVPQQLLSNFSRLRVLRM 544
+EL +P LL+ +L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSL 155
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 439 TCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDIS 497
T P L TL L+ N L+++ Q++P LTVL +S N L LP G + L LQ L +
Sbjct: 75 TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 132
Query: 498 YTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRM 544
+ LP G L L+ L+L ++L E+P LL+ L L +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLA-NNQLTELPAGLLNGLENLDTLLL 179
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 467 LTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGL-PEGLKALVNLKCLNLDWADEL 525
+TVL ++ N + R PT ++ L +LD + S++ L PE + L LK LNL +EL
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ-HNEL 85
Query: 526 VEVPQQ 531
++ Q
Sbjct: 86 SQISDQ 91
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 422 RRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLR 479
++L + N+I LP P L L L N L ++ G F + P LT L MS+N + R
Sbjct: 96 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155
Query: 480 QLPTGISKLVSLQLLDISYTSVTGL 504
SLQ L +S +T +
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLTHV 180
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 442 HLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQ-LPTGISKLVSLQLLDISYTS 500
+L+ L ++ R G F + L VLKM+ N LP ++L +L LD+S
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 501 VTGL-PEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLR 543
+ L P +L +L+ LN+ +++L VP + F RL L+
Sbjct: 482 LEQLSPTAFNSLSSLQVLNM-ASNQLKSVPDGI---FDRLTSLQ 521
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 442 HLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM--LRQLPTGISKLVSLQLLDISYT 499
HL TL L NP++++ G F + L L + + L P G L +L+ L++++
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHN 134
Query: 500 SVTG--LPEGLKALVNLKCLNL 519
+ LPE L NL+ L+L
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDL 156
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 154 EKAQDIFKTLSKKKFA---LLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGG-MEA 209
E+A+D + L +K L+LDD+W+ LK ++ TTR V M
Sbjct: 221 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLK----AFDNQCQILLTTRDKSVTDSVMGP 276
Query: 210 RRKFKV-ACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAMA 268
+ V + L E E+ V + +P A ++ KEC G PL + +IG +
Sbjct: 277 KHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALL- 331
Query: 269 YKKTPEEWRYAIEVLRR 285
+ P W Y + L+
Sbjct: 332 -RDFPNRWAYYLRQLQN 347
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 435 PTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLL 494
PT+ C L++L L+ N L S+ L LK+ N++ ++P + + +L+ L
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 468
Query: 495 DISYTSVTG-LPEGLKALVNLKCLNLDW 521
+ + +TG +P GL C NL+W
Sbjct: 469 ILDFNDLTGEIPSGLS-----NCTNLNW 491
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 463 SMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTG-LPEGLKALVNLKCLNLDW 521
SMP L +L + N + +P + L L +LD+S + G +P+ + AL L ++L
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 522 ADELVEVPQ 530
+ +P+
Sbjct: 711 NNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 435 PTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLL 494
PT+ C L++L L+ N L S+ L LK+ N++ ++P + + +L+ L
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471
Query: 495 DISYTSVTG-LPEGLKALVNLKCLNLDW 521
+ + +TG +P GL C NL+W
Sbjct: 472 ILDFNDLTGEIPSGLS-----NCTNLNW 494
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 463 SMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTG-LPEGLKALVNLKCLNLDW 521
SMP L +L + N + +P + L L +LD+S + G +P+ + AL L ++L
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 522 ADELVEVPQ 530
+ +P+
Sbjct: 714 NNLSGPIPE 722
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 429 NSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKL 488
N I ++ + P L +L+L +N + IT + L L + DN + R +P +++L
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVP--LARL 175
Query: 489 VSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNF 536
LQ L +S ++ L L+ L NL L L ++ E + P SN
Sbjct: 176 TKLQNLYLSKNHISDL-RALRGLKNLDVLEL-FSQEALNKPINHQSNL 221
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 422 RRLSLMKNSIGNLPTVPTCPH-LLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQ 480
++L + KN + +P P P L+ L ++DN +R + G F + + ++M N +
Sbjct: 105 QKLYISKNHLVEIP--PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162
Query: 481 -LPTGISKLVSLQLLDISYTSVTGLPEGLKALVN 513
G + L L IS +TG+P+ L +N
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN 196
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 442 HLLTLFLNDNPLRTITGGFFQSMPCLT-VLKMSDNIM-LRQLPTGISKLVSLQLLDISYT 499
HL TL L NP++++ G F + L ++ + N+ L P G L +L+ L++++
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIG--HLKTLKELNVAHN 136
Query: 500 SVTG--LPEGLKALVNLKCLNL 519
+ LPE L NL+ L+L
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDL 158
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 442 HLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM--LRQLPTGISKLVSLQLLDISYT 499
HL TL L NP++++ G F + L L + + L P G L +L+ L++++
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHN 136
Query: 500 SVTG--LPEGLKALVNLKCLNL 519
+ LPE L NL+ L+L
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDL 158
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 442 HLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM--LRQLPTGISKLVSLQLLDISYT 499
HL TL L NP++++ G F + L L + + L P G L +L+ L++++
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHN 135
Query: 500 SVTG--LPEGLKALVNLKCLNL 519
+ LPE L NL+ L+L
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDL 157
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 442 HLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM--LRQLPTGISKLVSLQLLDISYT 499
HL TL L NP++++ G F + L L + + L P G L +L+ L++++
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHN 134
Query: 500 SVTG--LPEGLKALVNLKCLNL 519
+ LPE L NL+ L+L
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDL 156
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 442 HLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM--LRQLPTGISKLVSLQLLDISYT 499
HL TL L NP++++ G F + L L + + L P G L +L+ L++++
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHN 135
Query: 500 SVTG--LPEGLKALVNLKCLNL 519
+ LPE L NL+ L+L
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDL 157
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 442 HLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM--LRQLPTGISKLVSLQLLDISYT 499
HL TL L NP++++ G F + L L + + L P G L +L+ L++++
Sbjct: 101 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHN 158
Query: 500 SVTG--LPEGLKALVNLKCLNL 519
+ LPE L NL+ L+L
Sbjct: 159 LIQSFKLPEYFSNLTNLEHLDL 180
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 5/129 (3%)
Query: 400 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVP---TCPHLLTLFLNDNPLRTI 456
+L + +G+ ++ G E L +++ + + +L+ L ++ R
Sbjct: 401 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 460
Query: 457 TGGFFQSMPCLTVLKMSDNIMLRQ-LPTGISKLVSLQLLDISYTSVTGL-PEGLKALVNL 514
G F + L VLKM+ N LP ++L +L LD+S + L P +L +L
Sbjct: 461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520
Query: 515 KCLNLDWAD 523
+ LN+ +
Sbjct: 521 QVLNMSHNN 529
>pdb|2J4J|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4K|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4L|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|G Chain G, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|H Chain H, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|I Chain I, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|J Chain J, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|K Chain K, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|L Chain L, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
Length = 226
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 515 KCLNLDWADELVEVPQ---QLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEEL-LGLK 570
K + D D L+ + Q +L N R+ ++ TG GS R RY+ +A E+ +G
Sbjct: 10 KFFDEDNVDNLIVLRQSIKELADNGFRVGIV----TGGGSTAR---RYIKLAREIGIGEA 62
Query: 571 YLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIG 613
YL++L I AY S Q L L EF ++ S G
Sbjct: 63 YLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHG 105
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 242 IPQLAQTVAKECGGLPLALIIIGRAMAYKKTPEEWRYAIEVLRR 285
+P A ++ KEC G PL + +IG + + P W Y + L+
Sbjct: 313 LPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQN 354
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 80/216 (37%), Gaps = 44/216 (20%)
Query: 474 DNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLL 533
D L +LP + L+ L ++ + LP + +L L+ L++ EL E+P+ L
Sbjct: 112 DAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLA 171
Query: 534 SN--------FSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEA- 584
S L+ LR+ TG+ S + + L+ L+ L+I A
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIRS----------LPASIANLQNLKSLKIRNSPLSAL 221
Query: 585 -----YQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKI 639
+ L LR CT R A L++ L + C + L +
Sbjct: 222 GPAIHHLPKLEELDLRGCT-------ALRNYPPIFGGRAPLKR---LILKDCSNLLTLPL 271
Query: 640 DYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTFLV 675
D + Q LE++ + C NL L L+
Sbjct: 272 DIHRLTQ----------LEKLDLRGCVNLSRLPSLI 297
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 445 TLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISK---------LVSLQLLD 495
TL L NPLR + S+ L L + L +LP ++ LV+LQ L
Sbjct: 131 TLTLARNPLRALPASIA-SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189
Query: 496 ISYTSVTGLPEGLKALVNLKCLNL 519
+ +T + LP + L NLK L +
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKI 213
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 467 LTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLK 515
LT L ++ N L +LP I L +L++LD+S+ +T LP L + LK
Sbjct: 249 LTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 401 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPT-VPTCPHLLTLFLNDNPLRTITGG 459
L G+ LTE PA+++ R L L N + +LP + +C L + DN + T+
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE 311
Query: 460 F 460
F
Sbjct: 312 F 312
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 442 HLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM--LRQLPTGISKLVSLQLLDISYT 499
HL TL L NP++++ G F + L L + + L P G L +L+ L++++
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHN 134
Query: 500 SVTG--LPEGLKALVNLKCLNL 519
+ LPE L NL+ L+L
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDL 156
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 5/129 (3%)
Query: 400 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVP---TCPHLLTLFLNDNPLRTI 456
+L + +G+ ++ G E L +++ + + +L+ L ++ R
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 457 TGGFFQSMPCLTVLKMSDNIMLRQ-LPTGISKLVSLQLLDISYTSVTGL-PEGLKALVNL 514
G F + L VLKM+ N LP ++L +L LD+S + L P +L +L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 515 KCLNLDWAD 523
+ LN+ +
Sbjct: 497 QVLNMSHNN 505
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 442 HLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQ-LPTGISKLVSLQLLDISYTS 500
+L+ L ++ R G F + L VLKM+ N LP ++L +L LD+S
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 501 VTGL-PEGLKALVNLKCLNLDWAD 523
+ L P +L +L+ LN+ +
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNN 210
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 491 LQLLDISYTSVTGLPEGLKALVNLK--CLNLDWADELVEVPQQLLSNFSRLRV---LRMF 545
LQ LD++ T + GLP G+K L LK L+++ D+L ++ + + L + ++
Sbjct: 277 LQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKL 336
Query: 546 ATGVG 550
GVG
Sbjct: 337 HLGVG 341
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 429 NSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKL 488
N I ++ + P L +L+L +N + IT + L L + DN + +P ++ L
Sbjct: 119 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGL 174
Query: 489 VSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNF 536
LQ L +S ++ L L L NL L L ++ E + P SN
Sbjct: 175 TKLQNLYLSKNHISDL-RALAGLKNLDVLEL-FSQECLNKPINHQSNL 220
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 429 NSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKL 488
N I ++ + P L +L+L +N + IT + L L + DN + +P ++ L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGL 195
Query: 489 VSLQLLDISYTSVTGLPEGLKALVNLKCLNL 519
LQ L +S ++ L L L NL L L
Sbjct: 196 TKLQNLYLSKNHISDL-RALAGLKNLDVLEL 225
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 429 NSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKL 488
N I ++ + P L +L+L +N + IT + L L + DN + +P ++ L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGL 195
Query: 489 VSLQLLDISYTSVTGLPEGLKALVNLKCLNL 519
LQ L +S ++ L L L NL L L
Sbjct: 196 TKLQNLYLSKNHISDL-RALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 429 NSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKL 488
N I ++ + P L +L+L +N + IT + L L + DN + +P ++ L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGL 195
Query: 489 VSLQLLDISYTSVTGLPEGLKALVNLKCLNL 519
LQ L +S ++ L L L NL L L
Sbjct: 196 TKLQNLYLSKNHISDL-RALAGLKNLDVLEL 225
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 429 NSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKL 488
N I ++ + P L +L+L +N + IT + L L + DN + +P ++ L
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGL 172
Query: 489 VSLQLLDISYTSVTGLPEGLKALVNLKCLNL 519
LQ L +S ++ L L L NL L L
Sbjct: 173 TKLQNLYLSKNHISDL-RALAGLKNLDVLEL 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,859,913
Number of Sequences: 62578
Number of extensions: 923731
Number of successful extensions: 2243
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 2132
Number of HSP's gapped (non-prelim): 167
length of query: 800
length of database: 14,973,337
effective HSP length: 107
effective length of query: 693
effective length of database: 8,277,491
effective search space: 5736301263
effective search space used: 5736301263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)