Query 041843
Match_columns 800
No_of_seqs 504 out of 3927
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 11:14:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.4E-89 5.3E-94 777.3 43.5 766 2-790 98-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 6.2E-63 1.3E-67 595.0 49.4 640 61-760 183-914 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 9.7E-43 2.1E-47 361.0 20.8 279 67-347 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 7.1E-24 1.5E-28 257.3 17.1 377 399-799 96-500 (968)
5 PLN00113 leucine-rich repeat r 99.9 6.2E-24 1.3E-28 257.8 16.1 363 411-800 156-549 (968)
6 KOG0444 Cytoskeletal regulator 99.8 2.9E-23 6.2E-28 213.8 -5.1 327 398-756 34-379 (1255)
7 PLN03210 Resistant to P. syrin 99.8 2.4E-20 5.3E-25 226.1 18.0 320 419-775 532-906 (1153)
8 KOG4194 Membrane glycoprotein 99.8 6.2E-21 1.3E-25 195.7 3.1 263 401-688 83-351 (873)
9 KOG0444 Cytoskeletal regulator 99.8 1.2E-21 2.6E-26 202.0 -7.7 317 409-756 22-355 (1255)
10 KOG4194 Membrane glycoprotein 99.8 1E-19 2.2E-24 186.9 4.9 337 421-797 80-439 (873)
11 KOG0472 Leucine-rich repeat pr 99.8 1.6E-20 3.5E-25 184.4 -3.8 319 402-749 189-538 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 2.4E-20 5.2E-25 183.2 -8.0 215 400-633 72-287 (565)
13 KOG0617 Ras suppressor protein 99.7 1.4E-18 3E-23 150.9 -4.7 168 408-590 23-193 (264)
14 PRK15387 E3 ubiquitin-protein 99.6 8.7E-15 1.9E-19 164.6 16.4 266 385-725 190-455 (788)
15 KOG0618 Serine/threonine phosp 99.6 8.6E-17 1.9E-21 174.6 -4.9 120 562-695 302-423 (1081)
16 KOG0617 Ras suppressor protein 99.6 1.1E-16 2.3E-21 139.3 -3.8 155 401-569 38-195 (264)
17 PRK04841 transcriptional regul 99.5 8.9E-13 1.9E-17 159.7 27.7 290 58-390 10-332 (903)
18 PRK15370 E3 ubiquitin-protein 99.5 2.2E-14 4.8E-19 162.6 9.9 242 398-689 180-426 (754)
19 COG2909 MalT ATP-dependent tra 99.5 5.2E-12 1.1E-16 137.7 23.5 292 58-389 15-337 (894)
20 PRK15387 E3 ubiquitin-protein 99.4 5E-13 1.1E-17 150.5 12.2 253 420-748 202-454 (788)
21 PRK15370 E3 ubiquitin-protein 99.4 2.2E-13 4.7E-18 154.6 9.4 221 420-689 179-399 (754)
22 KOG0618 Serine/threonine phosp 99.4 1E-14 2.2E-19 158.8 -1.4 228 420-689 46-275 (1081)
23 PRK00411 cdc6 cell division co 99.4 6.2E-11 1.4E-15 128.6 26.4 294 60-371 28-358 (394)
24 KOG4237 Extracellular matrix p 99.4 2.3E-13 4.9E-18 134.5 3.9 251 399-665 49-356 (498)
25 TIGR00635 ruvB Holliday juncti 99.3 5.9E-11 1.3E-15 123.8 18.9 279 62-376 4-294 (305)
26 TIGR02928 orc1/cdc6 family rep 99.3 7.5E-10 1.6E-14 118.9 27.6 294 61-371 14-350 (365)
27 PRK00080 ruvB Holliday junctio 99.3 2.7E-11 5.8E-16 127.0 15.8 279 61-375 24-314 (328)
28 PF01637 Arch_ATPase: Archaeal 99.3 1.1E-11 2.4E-16 124.3 11.7 193 64-262 1-233 (234)
29 KOG4658 Apoptotic ATPase [Sign 99.3 1.2E-12 2.5E-17 151.0 5.0 327 399-758 526-866 (889)
30 TIGR03015 pepcterm_ATPase puta 99.3 1.3E-09 2.8E-14 111.7 23.5 177 83-267 42-242 (269)
31 KOG4237 Extracellular matrix p 99.2 4.6E-13 1E-17 132.4 -2.7 240 427-689 54-333 (498)
32 COG2256 MGS1 ATPase related to 99.1 9.4E-09 2E-13 103.4 21.6 248 62-337 24-292 (436)
33 PF14580 LRR_9: Leucine-rich r 99.1 4.9E-11 1.1E-15 110.0 4.6 138 428-576 6-146 (175)
34 PF05729 NACHT: NACHT domain 99.1 9.3E-10 2E-14 103.7 12.1 140 85-231 1-163 (166)
35 KOG0532 Leucine-rich repeat (L 99.1 7.5E-12 1.6E-16 129.6 -2.5 188 403-606 82-270 (722)
36 cd00116 LRR_RI Leucine-rich re 99.1 3.8E-11 8.2E-16 126.8 2.6 16 617-632 217-232 (319)
37 COG3899 Predicted ATPase [Gene 99.0 6.8E-09 1.5E-13 120.8 17.8 305 64-389 2-385 (849)
38 cd00116 LRR_RI Leucine-rich re 99.0 3.2E-10 6.8E-15 119.8 5.5 215 438-688 78-317 (319)
39 PRK06893 DNA replication initi 99.0 5.7E-09 1.2E-13 103.0 13.9 150 83-265 38-205 (229)
40 KOG0532 Leucine-rich repeat (L 99.0 1.3E-11 2.8E-16 127.9 -5.8 172 400-587 54-228 (722)
41 PRK13342 recombination factor 99.0 3.8E-08 8.1E-13 106.5 20.3 177 62-266 12-199 (413)
42 PF14580 LRR_9: Leucine-rich r 99.0 7.7E-10 1.7E-14 102.1 5.9 128 417-548 17-151 (175)
43 PF05496 RuvB_N: Holliday junc 98.9 1.3E-08 2.9E-13 95.6 12.6 172 61-266 23-224 (233)
44 PRK07003 DNA polymerase III su 98.9 2.3E-07 5.1E-12 102.5 21.0 181 62-264 16-222 (830)
45 PTZ00112 origin recognition co 98.8 2E-07 4.3E-12 103.4 19.6 205 61-267 754-986 (1164)
46 KOG1259 Nischarin, modulator o 98.8 1.2E-09 2.6E-14 104.4 2.1 182 413-635 208-413 (490)
47 TIGR03420 DnaA_homol_Hda DnaA 98.8 2.8E-08 6E-13 98.8 11.8 166 67-266 22-204 (226)
48 PRK04195 replication factor C 98.8 4.7E-07 1E-11 100.0 22.1 181 61-267 13-206 (482)
49 KOG3207 Beta-tubulin folding c 98.8 1.2E-09 2.5E-14 110.2 1.4 139 438-586 118-262 (505)
50 PRK14960 DNA polymerase III su 98.8 3.6E-07 7.8E-12 99.9 20.0 173 62-261 15-217 (702)
51 COG4886 Leucine-rich repeat (L 98.8 4E-09 8.8E-14 114.6 5.2 174 419-635 116-291 (394)
52 PRK08084 DNA replication initi 98.8 1.5E-07 3.2E-12 93.3 14.3 168 63-264 24-210 (235)
53 KOG3207 Beta-tubulin folding c 98.8 1.4E-09 3.1E-14 109.7 -0.1 160 417-586 119-287 (505)
54 PRK14961 DNA polymerase III su 98.7 3.9E-07 8.4E-12 96.7 18.3 173 62-261 16-218 (363)
55 PRK12402 replication factor C 98.7 3E-07 6.4E-12 97.7 17.5 191 62-262 15-225 (337)
56 KOG2028 ATPase related to the 98.7 1.3E-07 2.8E-12 93.3 13.1 173 63-258 139-331 (554)
57 PRK14949 DNA polymerase III su 98.7 2.2E-07 4.7E-12 104.8 16.6 179 62-263 16-220 (944)
58 PRK08727 hypothetical protein; 98.7 1.6E-07 3.5E-12 92.9 13.7 164 63-260 20-201 (233)
59 PRK13341 recombination factor 98.7 1.3E-06 2.7E-11 99.5 22.0 168 62-260 28-214 (725)
60 COG1474 CDC6 Cdc6-related prot 98.7 8.7E-07 1.9E-11 92.8 19.1 198 62-264 17-239 (366)
61 KOG1259 Nischarin, modulator o 98.7 1.3E-09 2.7E-14 104.3 -2.1 102 417-522 282-384 (490)
62 PRK12323 DNA polymerase III su 98.7 2.5E-07 5.3E-12 100.9 14.9 175 62-262 16-224 (700)
63 PF14516 AAA_35: AAA-like doma 98.7 1.8E-05 4E-10 82.7 28.6 200 59-270 8-246 (331)
64 PLN03025 replication factor C 98.7 3.4E-07 7.4E-12 95.6 15.4 177 62-260 13-197 (319)
65 KOG4341 F-box protein containi 98.7 1.1E-09 2.3E-14 109.9 -3.1 83 442-524 139-228 (483)
66 PRK14963 DNA polymerase III su 98.7 8.4E-07 1.8E-11 97.1 18.3 189 62-260 14-214 (504)
67 PRK05564 DNA polymerase III su 98.7 1E-06 2.2E-11 91.9 18.1 176 62-263 4-190 (313)
68 COG2255 RuvB Holliday junction 98.7 2.1E-06 4.5E-11 82.6 18.2 189 62-264 26-224 (332)
69 PRK09112 DNA polymerase III su 98.6 9.2E-07 2E-11 92.3 16.7 195 61-264 22-241 (351)
70 PTZ00202 tuzin; Provisional 98.6 5.2E-06 1.1E-10 85.6 21.3 161 57-231 257-434 (550)
71 PRK00440 rfc replication facto 98.6 1.2E-06 2.7E-11 92.2 17.8 175 62-260 17-200 (319)
72 PRK14957 DNA polymerase III su 98.6 1.2E-06 2.6E-11 95.9 17.6 180 62-264 16-222 (546)
73 PRK08691 DNA polymerase III su 98.6 7.7E-07 1.7E-11 98.4 15.8 178 62-262 16-219 (709)
74 PRK07471 DNA polymerase III su 98.6 3.4E-06 7.3E-11 88.6 19.9 196 61-264 18-239 (365)
75 cd00009 AAA The AAA+ (ATPases 98.6 4.4E-07 9.6E-12 83.5 11.7 120 65-202 1-131 (151)
76 PF13191 AAA_16: AAA ATPase do 98.6 1.3E-07 2.8E-12 90.8 8.1 46 63-108 1-48 (185)
77 PRK05642 DNA replication initi 98.6 1E-06 2.2E-11 87.2 14.3 149 84-265 45-210 (234)
78 PRK14962 DNA polymerase III su 98.6 2.5E-06 5.3E-11 92.7 18.2 183 62-266 14-222 (472)
79 PRK05896 DNA polymerase III su 98.6 1.1E-06 2.4E-11 96.2 15.5 192 62-265 16-223 (605)
80 PRK06645 DNA polymerase III su 98.6 2.2E-06 4.8E-11 93.3 17.8 191 62-260 21-226 (507)
81 TIGR02397 dnaX_nterm DNA polym 98.6 2.9E-06 6.4E-11 90.8 18.5 180 62-264 14-219 (355)
82 PRK14956 DNA polymerase III su 98.6 1.5E-06 3.3E-11 92.5 15.8 190 62-259 18-218 (484)
83 PRK07994 DNA polymerase III su 98.6 1.3E-06 2.9E-11 97.1 16.0 188 62-263 16-220 (647)
84 PRK08903 DnaA regulatory inact 98.6 1E-06 2.2E-11 87.5 13.7 168 63-267 19-203 (227)
85 COG4886 Leucine-rich repeat (L 98.5 4.3E-08 9.4E-13 106.5 4.1 172 399-585 119-292 (394)
86 PF13855 LRR_8: Leucine rich r 98.5 7E-08 1.5E-12 73.0 3.9 60 441-501 1-61 (61)
87 PF00308 Bac_DnaA: Bacterial d 98.5 1.1E-06 2.4E-11 85.7 13.4 179 63-263 10-208 (219)
88 PRK14958 DNA polymerase III su 98.5 1.5E-06 3.3E-11 95.4 15.8 178 62-261 16-218 (509)
89 PF13401 AAA_22: AAA domain; P 98.5 1.7E-07 3.7E-12 84.2 6.8 116 83-200 3-125 (131)
90 PRK14951 DNA polymerase III su 98.5 2.6E-06 5.6E-11 94.7 17.2 193 62-262 16-224 (618)
91 PRK09087 hypothetical protein; 98.5 1.5E-06 3.3E-11 85.1 13.4 140 83-264 43-196 (226)
92 PLN03150 hypothetical protein; 98.5 2E-07 4.2E-12 106.2 8.3 105 443-547 420-525 (623)
93 PRK14964 DNA polymerase III su 98.5 3.5E-06 7.5E-11 91.0 17.0 177 62-260 13-214 (491)
94 PRK14969 DNA polymerase III su 98.5 2.9E-06 6.3E-11 93.9 16.7 180 62-263 16-221 (527)
95 PF13173 AAA_14: AAA domain 98.5 4.3E-07 9.3E-12 80.8 8.0 117 84-223 2-127 (128)
96 PRK09111 DNA polymerase III su 98.5 3.8E-06 8.3E-11 93.6 17.1 195 61-263 23-233 (598)
97 PRK14959 DNA polymerase III su 98.4 1.1E-05 2.3E-10 89.2 19.2 194 62-267 16-225 (624)
98 PRK07764 DNA polymerase III su 98.4 6.9E-06 1.5E-10 94.8 18.1 177 62-260 15-218 (824)
99 PRK07133 DNA polymerase III su 98.4 6E-06 1.3E-10 92.5 16.8 189 62-263 18-220 (725)
100 PRK07940 DNA polymerase III su 98.4 7.3E-06 1.6E-10 86.8 16.7 170 62-263 5-213 (394)
101 TIGR01242 26Sp45 26S proteasom 98.4 2.1E-06 4.5E-11 91.5 12.6 167 63-257 123-328 (364)
102 cd01128 rho_factor Transcripti 98.4 4.7E-07 1E-11 89.4 6.9 98 75-177 7-114 (249)
103 KOG2120 SCF ubiquitin ligase, 98.4 2E-08 4.2E-13 96.4 -2.8 181 466-689 186-374 (419)
104 PRK14952 DNA polymerase III su 98.4 9.8E-06 2.1E-10 89.8 17.6 181 62-265 13-222 (584)
105 PRK14955 DNA polymerase III su 98.4 5.3E-06 1.1E-10 89.2 15.3 197 61-262 15-227 (397)
106 PRK14970 DNA polymerase III su 98.4 1.3E-05 2.7E-10 86.0 18.2 177 62-260 17-206 (367)
107 KOG1909 Ran GTPase-activating 98.4 1.2E-07 2.5E-12 93.6 2.1 242 439-725 28-308 (382)
108 TIGR00678 holB DNA polymerase 98.4 1.3E-05 2.8E-10 76.9 16.2 158 73-259 3-187 (188)
109 PRK08451 DNA polymerase III su 98.4 1.5E-05 3.2E-10 87.0 18.5 176 62-263 14-218 (535)
110 PRK14954 DNA polymerase III su 98.4 1.1E-05 2.5E-10 90.0 17.5 192 62-258 16-223 (620)
111 PRK14953 DNA polymerase III su 98.4 1.2E-05 2.7E-10 87.7 17.3 176 62-264 16-221 (486)
112 PRK06305 DNA polymerase III su 98.3 1.7E-05 3.7E-10 86.2 17.7 180 61-263 16-223 (451)
113 PLN03150 hypothetical protein; 98.3 8.2E-07 1.8E-11 101.1 7.8 106 466-581 419-526 (623)
114 KOG2120 SCF ubiquitin ligase, 98.3 3.7E-08 8.1E-13 94.5 -2.9 184 490-725 186-373 (419)
115 PRK14950 DNA polymerase III su 98.3 2E-05 4.3E-10 89.0 18.3 191 62-263 16-221 (585)
116 PRK14971 DNA polymerase III su 98.3 2E-05 4.3E-10 88.7 18.1 176 62-260 17-219 (614)
117 PRK14088 dnaA chromosomal repl 98.3 1.1E-05 2.3E-10 87.6 15.2 199 64-283 108-332 (440)
118 KOG4341 F-box protein containi 98.3 2.8E-08 6E-13 100.0 -4.6 281 420-754 139-441 (483)
119 PRK14087 dnaA chromosomal repl 98.3 1E-05 2.2E-10 87.8 14.7 164 84-265 141-321 (450)
120 TIGR02903 spore_lon_C ATP-depe 98.3 7.5E-06 1.6E-10 92.4 14.0 200 61-266 153-398 (615)
121 KOG2543 Origin recognition com 98.3 1.7E-05 3.7E-10 79.6 14.6 164 61-230 5-192 (438)
122 PHA02544 44 clamp loader, smal 98.3 1.6E-05 3.4E-10 83.5 15.1 143 62-229 21-171 (316)
123 KOG1859 Leucine-rich repeat pr 98.3 3E-08 6.5E-13 106.1 -5.5 156 412-582 102-291 (1096)
124 PRK09376 rho transcription ter 98.3 1.9E-06 4.1E-11 88.5 7.4 89 83-176 168-266 (416)
125 PRK06620 hypothetical protein; 98.2 1.3E-05 2.9E-10 77.7 12.7 133 85-261 45-187 (214)
126 PF05673 DUF815: Protein of un 98.2 2.9E-05 6.3E-10 74.6 14.5 115 61-203 26-153 (249)
127 PRK03992 proteasome-activating 98.2 1.7E-05 3.6E-10 85.0 14.1 167 63-257 132-337 (389)
128 PRK14948 DNA polymerase III su 98.2 5.3E-05 1.1E-09 85.3 18.4 193 62-264 16-223 (620)
129 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.5E-11 66.3 3.6 56 420-475 2-59 (61)
130 PRK06647 DNA polymerase III su 98.2 5E-05 1.1E-09 84.5 17.9 189 62-262 16-219 (563)
131 TIGR00362 DnaA chromosomal rep 98.2 8.6E-05 1.9E-09 80.6 19.5 156 84-261 136-308 (405)
132 PRK05563 DNA polymerase III su 98.2 6.3E-05 1.4E-09 84.1 18.6 189 61-261 15-218 (559)
133 KOG0989 Replication factor C, 98.2 1.6E-05 3.5E-10 77.5 12.0 188 58-264 32-232 (346)
134 KOG2982 Uncharacterized conser 98.2 4.1E-07 8.9E-12 87.5 1.1 84 594-686 197-287 (418)
135 COG3903 Predicted ATPase [Gene 98.2 2.2E-06 4.8E-11 87.4 6.2 286 83-389 13-313 (414)
136 PRK14965 DNA polymerase III su 98.2 3.6E-05 7.7E-10 86.5 16.2 190 62-263 16-221 (576)
137 PRK07399 DNA polymerase III su 98.2 0.00026 5.6E-09 73.0 20.8 193 62-263 4-221 (314)
138 KOG0531 Protein phosphatase 1, 98.2 2E-07 4.3E-12 101.4 -2.1 82 437-522 91-172 (414)
139 PRK14086 dnaA chromosomal repl 98.1 7E-05 1.5E-09 82.4 16.9 155 85-261 315-486 (617)
140 PRK12422 chromosomal replicati 98.1 0.0001 2.2E-09 79.8 17.9 150 84-257 141-307 (445)
141 PRK00149 dnaA chromosomal repl 98.1 2.4E-05 5.2E-10 85.9 12.7 178 84-283 148-349 (450)
142 PTZ00361 26 proteosome regulat 98.1 2.1E-05 4.5E-10 84.2 11.3 167 63-256 184-388 (438)
143 TIGR00767 rho transcription te 98.1 1.6E-05 3.5E-10 82.3 9.9 93 83-177 167-266 (415)
144 PF05621 TniB: Bacterial TniB 98.1 0.00018 3.9E-09 71.6 16.7 194 63-259 35-257 (302)
145 COG1222 RPT1 ATP-dependent 26S 98.1 4E-05 8.7E-10 76.5 11.7 175 64-267 153-371 (406)
146 TIGR02881 spore_V_K stage V sp 98.1 2.9E-05 6.4E-10 78.6 11.3 151 63-234 7-194 (261)
147 KOG0991 Replication factor C, 98.1 4.8E-05 1E-09 70.9 11.4 99 62-178 27-125 (333)
148 PRK11331 5-methylcytosine-spec 98.0 2.8E-05 6E-10 82.0 11.0 108 62-178 175-284 (459)
149 PF12799 LRR_4: Leucine Rich r 98.0 5.1E-06 1.1E-10 57.2 3.6 38 466-504 2-39 (44)
150 PTZ00454 26S protease regulato 98.0 8E-05 1.7E-09 79.3 14.4 167 63-257 146-351 (398)
151 TIGR03345 VI_ClpV1 type VI sec 98.0 6.2E-05 1.4E-09 88.2 14.8 179 62-257 187-390 (852)
152 TIGR02639 ClpA ATP-dependent C 98.0 8.3E-05 1.8E-09 86.6 15.3 153 62-231 182-358 (731)
153 TIGR03689 pup_AAA proteasome A 98.0 6.7E-05 1.4E-09 81.6 13.1 156 62-233 182-380 (512)
154 KOG4579 Leucine-rich repeat (L 98.0 8.5E-07 1.8E-11 75.4 -1.2 109 421-531 29-141 (177)
155 PRK05707 DNA polymerase III su 98.0 0.0003 6.5E-09 73.0 17.2 153 83-263 21-203 (328)
156 COG0593 DnaA ATPase involved i 98.0 0.00018 4E-09 75.2 15.4 148 83-255 112-278 (408)
157 PF10443 RNA12: RNA12 protein; 98.0 0.0047 1E-07 64.6 25.4 199 67-274 1-289 (431)
158 KOG0531 Protein phosphatase 1, 98.0 9.5E-07 2.1E-11 96.1 -1.5 130 414-550 90-221 (414)
159 KOG2227 Pre-initiation complex 97.9 0.0005 1.1E-08 71.3 17.1 201 61-267 149-376 (529)
160 KOG2982 Uncharacterized conser 97.9 1.4E-06 3.1E-11 83.8 -1.6 68 619-695 197-266 (418)
161 CHL00181 cbbX CbbX; Provisiona 97.9 0.00038 8.2E-09 71.0 15.8 153 63-234 24-212 (287)
162 TIGR02880 cbbX_cfxQ probable R 97.9 0.00027 5.9E-09 72.1 14.7 152 63-233 23-210 (284)
163 COG3267 ExeA Type II secretory 97.9 0.0011 2.4E-08 63.6 17.3 189 70-266 39-248 (269)
164 PF12799 LRR_4: Leucine Rich r 97.9 1.7E-05 3.8E-10 54.6 3.7 41 489-530 1-41 (44)
165 PRK15386 type III secretion pr 97.9 2.7E-05 6E-10 81.1 6.8 80 417-507 50-133 (426)
166 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00044 9.4E-09 73.8 14.6 167 63-256 191-395 (802)
167 CHL00095 clpC Clp protease ATP 97.8 0.00017 3.7E-09 85.1 13.1 177 62-255 179-379 (821)
168 TIGR01241 FtsH_fam ATP-depende 97.8 0.00044 9.6E-09 77.0 15.8 169 62-257 55-260 (495)
169 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00047 1E-08 81.7 15.7 153 62-231 173-349 (852)
170 PRK10865 protein disaggregatio 97.7 0.00025 5.4E-09 83.6 13.1 153 62-231 178-354 (857)
171 PRK11034 clpA ATP-dependent Cl 97.7 0.00025 5.5E-09 81.5 12.7 153 63-231 187-362 (758)
172 smart00382 AAA ATPases associa 97.7 0.00013 2.8E-09 66.4 8.6 88 84-178 2-90 (148)
173 KOG1859 Leucine-rich repeat pr 97.7 5.9E-07 1.3E-11 96.5 -7.8 114 407-523 175-290 (1096)
174 KOG1644 U2-associated snRNP A' 97.7 5.5E-05 1.2E-09 69.3 5.8 100 420-520 43-148 (233)
175 KOG3665 ZYG-1-like serine/thre 97.7 1.7E-05 3.6E-10 90.2 3.1 100 420-521 123-229 (699)
176 PRK15386 type III secretion pr 97.7 0.00011 2.3E-09 76.7 8.7 64 461-530 48-112 (426)
177 PRK08058 DNA polymerase III su 97.7 0.0012 2.7E-08 69.0 16.6 159 63-230 6-181 (329)
178 PRK10536 hypothetical protein; 97.7 0.0011 2.4E-08 64.8 14.7 131 63-200 56-212 (262)
179 PF13177 DNA_pol3_delta2: DNA 97.7 0.00067 1.4E-08 62.8 12.7 135 66-219 1-162 (162)
180 CHL00176 ftsH cell division pr 97.7 0.00041 8.9E-09 78.3 13.4 167 62-255 183-386 (638)
181 PRK08769 DNA polymerase III su 97.7 0.0021 4.5E-08 66.1 17.3 178 69-264 11-209 (319)
182 COG2812 DnaX DNA polymerase II 97.7 0.00023 5E-09 76.9 10.5 182 62-258 16-215 (515)
183 PRK08116 hypothetical protein; 97.7 0.00012 2.6E-09 73.8 7.8 97 85-199 115-219 (268)
184 PRK06871 DNA polymerase III su 97.6 0.0025 5.4E-08 65.6 17.1 172 70-260 10-200 (325)
185 KOG1909 Ran GTPase-activating 97.6 9.3E-06 2E-10 80.4 -0.7 160 418-582 119-310 (382)
186 PRK12377 putative replication 97.6 0.00069 1.5E-08 67.0 12.3 73 84-176 101-173 (248)
187 KOG0741 AAA+-type ATPase [Post 97.6 0.00049 1.1E-08 72.1 10.9 152 83-267 537-716 (744)
188 PRK07993 DNA polymerase III su 97.6 0.0029 6.4E-08 65.9 16.8 174 69-261 9-202 (334)
189 PRK12608 transcription termina 97.6 0.00049 1.1E-08 71.1 10.7 105 70-176 119-230 (380)
190 TIGR00602 rad24 checkpoint pro 97.6 0.00038 8.3E-09 77.9 10.7 48 61-108 83-134 (637)
191 KOG3665 ZYG-1-like serine/thre 97.5 5.3E-05 1.2E-09 86.1 3.1 137 441-583 122-263 (699)
192 PRK06090 DNA polymerase III su 97.5 0.0048 1E-07 63.4 16.6 162 69-263 10-201 (319)
193 KOG0730 AAA+-type ATPase [Post 97.5 0.0032 6.9E-08 68.4 15.5 167 63-256 435-636 (693)
194 PF02562 PhoH: PhoH-like prote 97.5 0.00038 8.2E-09 66.1 7.7 127 66-199 4-154 (205)
195 PRK08181 transposase; Validate 97.5 0.00043 9.4E-09 69.3 8.4 71 85-176 107-177 (269)
196 PF00004 AAA: ATPase family as 97.5 0.00021 4.6E-09 63.9 5.8 22 87-108 1-22 (132)
197 COG0466 Lon ATP-dependent Lon 97.5 0.00058 1.2E-08 74.7 9.8 155 62-231 323-508 (782)
198 KOG0734 AAA+-type ATPase conta 97.4 0.00071 1.5E-08 71.0 10.0 46 63-108 305-361 (752)
199 COG1373 Predicted ATPase (AAA+ 97.4 0.0017 3.8E-08 69.5 13.3 135 66-228 21-164 (398)
200 PRK08118 topology modulation p 97.4 0.00035 7.6E-09 65.1 7.1 36 85-120 2-37 (167)
201 COG1223 Predicted ATPase (AAA+ 97.4 0.0039 8.4E-08 59.6 13.8 167 62-256 121-318 (368)
202 TIGR01243 CDC48 AAA family ATP 97.4 0.0022 4.7E-08 75.2 15.1 168 62-257 453-657 (733)
203 KOG0744 AAA+-type ATPase [Post 97.4 0.0016 3.4E-08 64.2 11.4 82 84-177 177-261 (423)
204 PRK07261 topology modulation p 97.4 0.0005 1.1E-08 64.4 7.5 67 86-177 2-68 (171)
205 PLN00020 ribulose bisphosphate 97.4 0.0039 8.5E-08 63.8 13.7 145 83-258 147-333 (413)
206 KOG1514 Origin recognition com 97.4 0.0071 1.5E-07 66.2 16.5 198 62-266 396-624 (767)
207 PRK04296 thymidine kinase; Pro 97.3 0.00033 7.1E-09 66.9 5.9 113 85-203 3-118 (190)
208 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0014 3.1E-08 70.0 10.9 150 83-257 544-718 (802)
209 TIGR02640 gas_vesic_GvpN gas v 97.3 0.005 1.1E-07 62.2 14.7 55 69-132 9-63 (262)
210 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0031 6.8E-08 68.9 13.8 170 62-257 228-429 (489)
211 KOG2228 Origin recognition com 97.3 0.0021 4.6E-08 63.9 11.0 167 62-231 24-219 (408)
212 PRK07952 DNA replication prote 97.3 0.0012 2.7E-08 65.0 9.5 88 70-176 84-172 (244)
213 KOG0652 26S proteasome regulat 97.3 0.0043 9.4E-08 59.1 12.5 161 63-247 172-371 (424)
214 KOG1969 DNA replication checkp 97.3 0.00057 1.2E-08 74.6 7.4 74 82-178 324-399 (877)
215 TIGR01243 CDC48 AAA family ATP 97.3 0.0032 7E-08 73.8 14.2 169 63-258 179-382 (733)
216 COG1484 DnaC DNA replication p 97.3 0.00073 1.6E-08 67.4 7.5 90 67-176 88-177 (254)
217 KOG1947 Leucine rich repeat pr 97.3 9.9E-05 2.1E-09 82.9 1.4 35 440-474 187-223 (482)
218 TIGR02639 ClpA ATP-dependent C 97.2 0.0017 3.8E-08 75.7 11.4 58 62-125 454-519 (731)
219 smart00763 AAA_PrkA PrkA AAA d 97.2 0.0011 2.5E-08 68.2 8.5 47 62-108 51-102 (361)
220 PRK04132 replication factor C 97.2 0.0067 1.5E-07 70.1 15.6 151 90-261 570-729 (846)
221 TIGR00763 lon ATP-dependent pr 97.2 0.0025 5.4E-08 74.9 12.4 47 62-108 320-371 (775)
222 KOG0743 AAA+-type ATPase [Post 97.2 0.096 2.1E-06 55.0 22.2 146 85-267 236-413 (457)
223 PRK06835 DNA replication prote 97.2 0.00069 1.5E-08 70.1 6.8 37 84-123 183-219 (329)
224 PRK06526 transposase; Provisio 97.2 0.00061 1.3E-08 67.9 6.2 25 84-108 98-122 (254)
225 PRK06921 hypothetical protein; 97.2 0.0013 2.7E-08 66.4 8.5 38 83-123 116-154 (266)
226 COG0470 HolB ATPase involved i 97.2 0.0028 6.2E-08 66.8 11.7 140 63-220 2-170 (325)
227 PF04665 Pox_A32: Poxvirus A32 97.2 0.00095 2.1E-08 64.9 7.1 37 84-123 13-49 (241)
228 PRK08939 primosomal protein Dn 97.2 0.0018 4E-08 66.4 9.6 113 66-199 135-259 (306)
229 KOG4579 Leucine-rich repeat (L 97.2 4.6E-05 1E-09 65.1 -1.7 88 419-508 53-142 (177)
230 PRK06964 DNA polymerase III su 97.2 0.024 5.2E-07 59.0 17.5 88 165-263 131-225 (342)
231 KOG1644 U2-associated snRNP A' 97.2 0.00045 9.7E-09 63.5 4.2 124 443-578 21-148 (233)
232 PF01695 IstB_IS21: IstB-like 97.1 0.00034 7.3E-09 65.8 3.6 72 84-176 47-118 (178)
233 KOG2004 Mitochondrial ATP-depe 97.1 0.0034 7.4E-08 68.6 11.2 152 62-231 411-596 (906)
234 cd01120 RecA-like_NTPases RecA 97.1 0.0026 5.6E-08 59.3 9.4 40 86-128 1-40 (165)
235 PRK09361 radB DNA repair and r 97.1 0.0023 5.1E-08 63.3 9.2 46 83-132 22-67 (225)
236 PF07693 KAP_NTPase: KAP famil 97.1 0.018 3.9E-07 60.7 16.4 74 67-140 1-80 (325)
237 PRK09183 transposase/IS protei 97.1 0.0015 3.3E-08 65.5 7.8 25 84-108 102-126 (259)
238 PRK10787 DNA-binding ATP-depen 97.1 0.0034 7.3E-08 73.0 11.4 156 61-231 321-506 (784)
239 KOG0731 AAA+-type ATPase conta 97.1 0.0084 1.8E-07 67.3 13.7 171 62-259 311-520 (774)
240 PF10236 DAP3: Mitochondrial r 97.0 0.026 5.6E-07 58.3 16.3 49 212-260 258-306 (309)
241 cd01393 recA_like RecA is a b 97.0 0.0059 1.3E-07 60.5 11.3 90 83-176 18-124 (226)
242 TIGR01650 PD_CobS cobaltochela 97.0 0.0082 1.8E-07 61.3 12.2 62 61-131 44-105 (327)
243 KOG2035 Replication factor C, 97.0 0.038 8.2E-07 53.7 15.7 209 63-289 14-264 (351)
244 TIGR02237 recomb_radB DNA repa 97.0 0.0021 4.6E-08 62.8 7.8 48 83-134 11-58 (209)
245 PRK10865 protein disaggregatio 97.0 0.0038 8.2E-08 73.8 11.2 61 62-125 568-636 (857)
246 COG2607 Predicted ATPase (AAA+ 97.0 0.004 8.6E-08 59.0 9.0 47 62-108 60-109 (287)
247 KOG0727 26S proteasome regulat 97.0 0.0065 1.4E-07 57.6 10.3 157 64-244 157-352 (408)
248 TIGR02902 spore_lonB ATP-depen 97.0 0.0089 1.9E-07 66.8 13.5 46 62-108 65-110 (531)
249 PRK10733 hflB ATP-dependent me 97.0 0.0077 1.7E-07 69.0 13.2 167 63-256 153-356 (644)
250 cd01131 PilT Pilus retraction 97.0 0.0012 2.6E-08 63.6 5.6 109 85-203 2-111 (198)
251 COG1875 NYN ribonuclease and A 97.0 0.0026 5.7E-08 64.0 7.9 131 66-199 228-386 (436)
252 PF13207 AAA_17: AAA domain; P 96.9 0.00068 1.5E-08 59.6 3.3 23 86-108 1-23 (121)
253 COG0542 clpA ATP-binding subun 96.9 0.0017 3.7E-08 73.3 6.9 105 62-177 491-604 (786)
254 KOG1947 Leucine rich repeat pr 96.9 0.0002 4.3E-09 80.5 -0.4 113 463-582 186-307 (482)
255 CHL00095 clpC Clp protease ATP 96.9 0.0025 5.4E-08 75.4 8.6 61 62-125 509-577 (821)
256 cd01394 radB RadB. The archaea 96.9 0.0067 1.5E-07 59.7 10.5 43 83-128 18-60 (218)
257 KOG0735 AAA+-type ATPase [Post 96.9 0.012 2.6E-07 64.4 12.4 150 83-256 430-608 (952)
258 PF03215 Rad17: Rad17 cell cyc 96.9 0.015 3.2E-07 64.2 13.5 56 63-123 20-79 (519)
259 PF00448 SRP54: SRP54-type pro 96.8 0.0042 9.1E-08 59.4 8.1 89 84-175 1-92 (196)
260 KOG2739 Leucine-rich acidic nu 96.8 0.00078 1.7E-08 64.8 3.0 83 417-502 41-129 (260)
261 KOG2123 Uncharacterized conser 96.8 9.7E-05 2.1E-09 70.9 -3.1 100 440-543 18-123 (388)
262 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0027 5.8E-08 75.4 7.8 62 62-126 565-634 (852)
263 PRK06696 uridine kinase; Valid 96.8 0.0031 6.8E-08 62.1 7.0 43 66-108 2-46 (223)
264 PRK08699 DNA polymerase III su 96.8 0.039 8.6E-07 57.3 15.4 26 83-108 20-45 (325)
265 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0073 1.6E-07 60.3 9.8 52 83-134 18-72 (235)
266 PRK11034 clpA ATP-dependent Cl 96.7 0.0069 1.5E-07 70.0 10.1 47 62-108 458-512 (758)
267 KOG0728 26S proteasome regulat 96.7 0.049 1.1E-06 51.9 13.7 161 64-248 148-348 (404)
268 PRK05800 cobU adenosylcobinami 96.7 0.011 2.4E-07 55.1 9.6 24 85-108 2-25 (170)
269 TIGR02012 tigrfam_recA protein 96.7 0.005 1.1E-07 63.1 8.0 87 82-176 53-143 (321)
270 cd00983 recA RecA is a bacter 96.7 0.0052 1.1E-07 63.0 7.7 86 83-176 54-143 (325)
271 PRK06762 hypothetical protein; 96.7 0.022 4.8E-07 53.2 11.5 25 84-108 2-26 (166)
272 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0052 1.1E-07 72.4 8.5 60 62-124 566-633 (852)
273 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.013 2.8E-07 58.4 10.2 48 83-135 20-67 (237)
274 KOG0736 Peroxisome assembly fa 96.6 0.14 3E-06 57.1 18.4 92 63-177 673-775 (953)
275 TIGR02858 spore_III_AA stage I 96.6 0.018 3.9E-07 57.8 11.1 125 71-203 98-231 (270)
276 PRK05541 adenylylsulfate kinas 96.6 0.0061 1.3E-07 57.6 7.5 37 83-122 6-42 (176)
277 KOG2739 Leucine-rich acidic nu 96.6 0.0009 1.9E-08 64.4 1.7 107 439-547 41-153 (260)
278 PRK09354 recA recombinase A; P 96.6 0.0069 1.5E-07 62.6 7.9 86 83-176 59-148 (349)
279 cd01133 F1-ATPase_beta F1 ATP 96.6 0.011 2.3E-07 58.9 8.9 92 83-177 68-174 (274)
280 COG0542 clpA ATP-binding subun 96.5 0.0064 1.4E-07 68.8 7.9 152 63-231 171-346 (786)
281 PRK06067 flagellar accessory p 96.5 0.017 3.8E-07 57.4 10.3 89 82-176 23-130 (234)
282 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.015 3.2E-07 52.9 8.7 114 85-202 3-139 (159)
283 PRK13531 regulatory ATPase Rav 96.5 0.0038 8.2E-08 66.9 5.7 44 62-108 20-63 (498)
284 PRK15455 PrkA family serine pr 96.5 0.0028 6.1E-08 68.7 4.7 47 62-108 76-127 (644)
285 COG0464 SpoVK ATPases of the A 96.5 0.02 4.3E-07 64.1 11.7 130 83-235 275-427 (494)
286 PRK07132 DNA polymerase III su 96.4 0.13 2.8E-06 52.6 16.2 167 70-263 4-185 (299)
287 cd03247 ABCC_cytochrome_bd The 96.4 0.02 4.3E-07 54.2 9.7 124 83-215 27-169 (178)
288 KOG0735 AAA+-type ATPase [Post 96.4 0.086 1.9E-06 58.1 15.2 146 85-257 702-870 (952)
289 KOG0739 AAA+-type ATPase [Post 96.4 0.069 1.5E-06 52.4 13.0 168 63-257 134-335 (439)
290 KOG0729 26S proteasome regulat 96.4 0.0055 1.2E-07 58.6 5.5 46 63-108 178-235 (435)
291 cd00544 CobU Adenosylcobinamid 96.4 0.0052 1.1E-07 57.0 5.4 79 87-175 2-82 (169)
292 PRK00771 signal recognition pa 96.4 0.027 5.8E-07 60.7 11.4 89 83-175 94-184 (437)
293 PRK13695 putative NTPase; Prov 96.4 0.0059 1.3E-07 57.6 5.9 23 86-108 2-24 (174)
294 COG2884 FtsE Predicted ATPase 96.4 0.031 6.8E-07 51.2 10.0 121 83-207 27-203 (223)
295 PRK04301 radA DNA repair and r 96.4 0.024 5.1E-07 59.2 10.8 54 83-136 101-157 (317)
296 cd03115 SRP The signal recogni 96.4 0.013 2.9E-07 55.1 8.1 88 86-176 2-92 (173)
297 cd01124 KaiC KaiC is a circadi 96.4 0.0098 2.1E-07 56.9 7.3 37 86-125 1-37 (187)
298 PF08423 Rad51: Rad51; InterP 96.4 0.013 2.8E-07 58.7 8.3 57 83-140 37-96 (256)
299 COG1618 Predicted nucleotide k 96.3 0.0046 9.9E-08 54.9 4.1 25 84-108 5-29 (179)
300 PF13604 AAA_30: AAA domain; P 96.3 0.01 2.2E-07 56.9 7.0 25 84-108 18-42 (196)
301 TIGR02238 recomb_DMC1 meiotic 96.3 0.038 8.1E-07 57.1 11.4 59 83-142 95-156 (313)
302 cd03223 ABCD_peroxisomal_ALDP 96.3 0.023 5.1E-07 52.9 9.1 122 83-215 26-160 (166)
303 cd01121 Sms Sms (bacterial rad 96.3 0.017 3.8E-07 61.0 9.1 84 84-176 82-168 (372)
304 PF03308 ArgK: ArgK protein; 96.3 0.0079 1.7E-07 58.5 5.8 61 70-131 14-75 (266)
305 PRK04328 hypothetical protein; 96.2 0.02 4.4E-07 57.3 9.0 41 83-126 22-62 (249)
306 COG0572 Udk Uridine kinase [Nu 96.2 0.013 2.8E-07 55.7 7.1 26 83-108 7-32 (218)
307 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.017 3.7E-07 52.4 7.7 100 83-204 25-130 (144)
308 PRK10867 signal recognition pa 96.2 0.036 7.7E-07 59.6 11.2 39 83-124 99-138 (433)
309 PF01583 APS_kinase: Adenylyls 96.2 0.0049 1.1E-07 55.7 4.0 37 84-123 2-38 (156)
310 cd03228 ABCC_MRP_Like The MRP 96.2 0.028 6E-07 52.8 9.3 123 83-215 27-167 (171)
311 KOG0726 26S proteasome regulat 96.2 0.039 8.5E-07 53.8 10.1 46 63-108 186-243 (440)
312 COG5238 RNA1 Ran GTPase-activa 96.2 0.0026 5.5E-08 61.2 2.1 151 618-788 154-317 (388)
313 PRK07667 uridine kinase; Provi 96.2 0.0097 2.1E-07 57.0 6.2 37 72-108 4-41 (193)
314 COG1136 SalX ABC-type antimicr 96.2 0.033 7.1E-07 53.7 9.6 128 83-216 30-216 (226)
315 PF00485 PRK: Phosphoribulokin 96.2 0.025 5.3E-07 54.4 9.0 23 86-108 1-23 (194)
316 PRK14974 cell division protein 96.2 0.044 9.4E-07 56.9 11.2 90 83-176 139-232 (336)
317 PRK11889 flhF flagellar biosyn 96.2 0.045 9.7E-07 57.1 11.1 88 83-175 240-329 (436)
318 COG4618 ArpD ABC-type protease 96.2 0.0093 2E-07 62.9 6.2 25 84-108 362-386 (580)
319 PRK06547 hypothetical protein; 96.2 0.0079 1.7E-07 56.1 5.2 32 76-108 8-39 (172)
320 PHA00729 NTP-binding motif con 96.1 0.0077 1.7E-07 58.0 5.1 35 73-108 7-41 (226)
321 PRK14722 flhF flagellar biosyn 96.1 0.02 4.4E-07 60.0 8.5 89 83-176 136-225 (374)
322 COG0563 Adk Adenylate kinase a 96.1 0.01 2.2E-07 55.7 5.7 23 86-108 2-24 (178)
323 cd03238 ABC_UvrA The excision 96.1 0.029 6.2E-07 52.6 8.7 121 83-215 20-161 (176)
324 PF00560 LRR_1: Leucine Rich R 96.1 0.0025 5.4E-08 36.4 1.0 19 491-509 2-20 (22)
325 PRK12678 transcription termina 96.1 0.0071 1.5E-07 65.4 5.0 100 73-177 405-514 (672)
326 COG0468 RecA RecA/RadA recombi 96.1 0.026 5.6E-07 56.5 8.7 91 82-176 58-151 (279)
327 PF13306 LRR_5: Leucine rich r 96.1 0.016 3.4E-07 51.5 6.6 102 437-545 8-111 (129)
328 PF13238 AAA_18: AAA domain; P 96.1 0.0046 9.9E-08 54.9 3.1 22 87-108 1-22 (129)
329 cd02019 NK Nucleoside/nucleoti 96.1 0.0052 1.1E-07 47.4 2.9 23 86-108 1-23 (69)
330 TIGR00064 ftsY signal recognit 96.1 0.036 7.7E-07 56.1 9.7 89 83-175 71-163 (272)
331 COG0465 HflB ATP-dependent Zn 96.0 0.086 1.9E-06 58.3 13.1 170 61-257 149-355 (596)
332 COG4608 AppF ABC-type oligopep 96.0 0.037 8E-07 54.3 9.2 121 83-207 38-176 (268)
333 TIGR03881 KaiC_arch_4 KaiC dom 96.0 0.047 1E-06 54.1 10.4 41 83-126 19-59 (229)
334 COG1102 Cmk Cytidylate kinase 96.0 0.012 2.7E-07 52.2 5.4 44 86-143 2-45 (179)
335 PF13306 LRR_5: Leucine rich r 96.0 0.018 3.9E-07 51.1 6.7 118 415-540 8-129 (129)
336 PF06309 Torsin: Torsin; Inte 96.0 0.027 5.8E-07 48.4 7.2 46 63-108 26-77 (127)
337 PF13481 AAA_25: AAA domain; P 96.0 0.021 4.5E-07 55.0 7.6 43 84-126 32-81 (193)
338 PLN03187 meiotic recombination 96.0 0.049 1.1E-06 56.7 10.6 59 83-142 125-186 (344)
339 KOG2123 Uncharacterized conser 96.0 0.00064 1.4E-08 65.4 -2.9 69 406-475 29-98 (388)
340 KOG2170 ATPase of the AAA+ sup 96.0 0.016 3.4E-07 57.1 6.4 102 62-178 82-190 (344)
341 COG1703 ArgK Putative periplas 96.0 0.012 2.7E-07 57.9 5.8 60 72-132 38-98 (323)
342 COG0194 Gmk Guanylate kinase [ 96.0 0.028 6E-07 51.7 7.5 25 84-108 4-28 (191)
343 cd03214 ABC_Iron-Siderophores_ 96.0 0.035 7.6E-07 52.6 8.7 118 83-204 24-161 (180)
344 COG4088 Predicted nucleotide k 96.0 0.022 4.9E-07 52.7 6.8 24 85-108 2-25 (261)
345 TIGR03499 FlhF flagellar biosy 95.9 0.033 7.1E-07 56.9 8.9 87 83-174 193-280 (282)
346 TIGR00959 ffh signal recogniti 95.9 0.036 7.8E-07 59.6 9.4 92 83-176 98-192 (428)
347 COG5238 RNA1 Ran GTPase-activa 95.9 0.0039 8.5E-08 60.0 1.9 66 617-689 210-283 (388)
348 cd03246 ABCC_Protease_Secretio 95.9 0.029 6.3E-07 52.8 7.8 26 83-108 27-52 (173)
349 PF07728 AAA_5: AAA domain (dy 95.9 0.017 3.6E-07 52.1 5.9 42 87-134 2-43 (139)
350 TIGR02236 recomb_radA DNA repa 95.9 0.053 1.1E-06 56.5 10.4 53 83-135 94-149 (310)
351 cd03216 ABC_Carb_Monos_I This 95.9 0.025 5.4E-07 52.6 7.1 111 83-203 25-144 (163)
352 PRK12727 flagellar biosynthesi 95.8 0.053 1.2E-06 58.9 10.3 89 83-176 349-438 (559)
353 PF00006 ATP-synt_ab: ATP synt 95.8 0.046 1E-06 52.8 9.0 96 74-176 5-115 (215)
354 cd01129 PulE-GspE PulE/GspE Th 95.8 0.029 6.3E-07 56.5 8.0 118 65-198 62-180 (264)
355 PRK08233 hypothetical protein; 95.8 0.0079 1.7E-07 57.2 3.7 25 84-108 3-27 (182)
356 PRK05973 replicative DNA helic 95.8 0.06 1.3E-06 52.8 9.7 48 84-136 64-111 (237)
357 PF00154 RecA: recA bacterial 95.8 0.13 2.9E-06 52.6 12.5 136 24-178 2-143 (322)
358 TIGR02239 recomb_RAD51 DNA rep 95.8 0.05 1.1E-06 56.4 9.6 58 83-141 95-155 (316)
359 PF07726 AAA_3: ATPase family 95.8 0.0056 1.2E-07 52.7 2.2 28 87-117 2-29 (131)
360 PLN03186 DNA repair protein RA 95.8 0.074 1.6E-06 55.4 10.8 59 83-142 122-183 (342)
361 PF13671 AAA_33: AAA domain; P 95.8 0.0081 1.8E-07 54.5 3.4 23 86-108 1-23 (143)
362 PF00910 RNA_helicase: RNA hel 95.8 0.0066 1.4E-07 51.7 2.5 22 87-108 1-22 (107)
363 COG1428 Deoxynucleoside kinase 95.8 0.0083 1.8E-07 56.2 3.3 49 84-138 4-52 (216)
364 cd03230 ABC_DR_subfamily_A Thi 95.7 0.046 1E-06 51.4 8.5 116 83-205 25-159 (173)
365 PRK08533 flagellar accessory p 95.7 0.049 1.1E-06 53.7 9.0 49 83-136 23-71 (230)
366 CHL00206 ycf2 Ycf2; Provisiona 95.7 0.25 5.3E-06 61.3 16.1 26 83-108 1629-1654(2281)
367 PRK05480 uridine/cytidine kina 95.7 0.0094 2E-07 58.2 3.9 26 83-108 5-30 (209)
368 PRK09270 nucleoside triphospha 95.7 0.017 3.6E-07 57.2 5.7 28 81-108 30-57 (229)
369 TIGR00390 hslU ATP-dependent p 95.7 0.025 5.4E-07 59.5 7.0 47 62-108 12-71 (441)
370 PRK10463 hydrogenase nickel in 95.7 0.035 7.5E-07 55.8 7.8 27 82-108 102-128 (290)
371 TIGR00150 HI0065_YjeE ATPase, 95.7 0.018 3.9E-07 50.6 5.1 40 69-108 6-46 (133)
372 PRK05439 pantothenate kinase; 95.7 0.085 1.8E-06 53.9 10.7 27 82-108 84-110 (311)
373 COG4133 CcmA ABC-type transpor 95.7 0.053 1.1E-06 49.8 8.1 35 84-121 28-62 (209)
374 PTZ00301 uridine kinase; Provi 95.7 0.0092 2E-07 57.6 3.6 25 84-108 3-27 (210)
375 COG1066 Sms Predicted ATP-depe 95.7 0.032 6.9E-07 57.6 7.5 85 84-176 93-178 (456)
376 PF08298 AAA_PrkA: PrkA AAA do 95.7 0.016 3.4E-07 59.3 5.3 47 62-108 61-112 (358)
377 cd03229 ABC_Class3 This class 95.7 0.029 6.2E-07 53.1 6.9 26 83-108 25-50 (178)
378 PRK13539 cytochrome c biogenes 95.7 0.061 1.3E-06 52.3 9.4 26 83-108 27-52 (207)
379 PRK13765 ATP-dependent proteas 95.7 0.018 3.9E-07 65.0 6.3 75 61-141 30-104 (637)
380 cd03222 ABC_RNaseL_inhibitor T 95.7 0.039 8.5E-07 51.7 7.6 26 83-108 24-49 (177)
381 PRK11823 DNA repair protein Ra 95.7 0.032 6.9E-07 60.9 8.0 41 83-126 79-119 (446)
382 PF12775 AAA_7: P-loop contain 95.7 0.014 3.1E-07 58.9 5.0 88 72-176 23-110 (272)
383 PTZ00035 Rad51 protein; Provis 95.7 0.12 2.6E-06 54.1 11.9 58 83-141 117-177 (337)
384 PF00158 Sigma54_activat: Sigm 95.7 0.018 4E-07 53.4 5.3 45 64-108 1-46 (168)
385 TIGR01420 pilT_fam pilus retra 95.7 0.023 4.9E-07 60.0 6.6 107 84-199 122-228 (343)
386 PRK14527 adenylate kinase; Pro 95.7 0.018 3.9E-07 55.2 5.4 26 83-108 5-30 (191)
387 TIGR00235 udk uridine kinase. 95.7 0.01 2.2E-07 57.8 3.7 26 83-108 5-30 (207)
388 PRK05201 hslU ATP-dependent pr 95.6 0.027 5.9E-07 59.2 6.9 48 61-108 14-74 (443)
389 COG1121 ZnuC ABC-type Mn/Zn tr 95.6 0.052 1.1E-06 53.2 8.3 120 84-203 30-201 (254)
390 PF06745 KaiC: KaiC; InterPro 95.6 0.015 3.2E-07 57.6 4.8 88 83-176 18-125 (226)
391 TIGR00708 cobA cob(I)alamin ad 95.6 0.076 1.6E-06 49.0 8.9 113 84-201 5-140 (173)
392 PRK09519 recA DNA recombinatio 95.6 0.096 2.1E-06 60.1 11.6 86 83-176 59-148 (790)
393 PRK05917 DNA polymerase III su 95.6 0.34 7.4E-06 48.9 14.3 40 69-108 4-43 (290)
394 PTZ00088 adenylate kinase 1; P 95.6 0.011 2.3E-07 58.0 3.5 24 85-108 7-30 (229)
395 TIGR00554 panK_bact pantothena 95.6 0.083 1.8E-06 53.6 10.0 27 82-108 60-86 (290)
396 KOG1051 Chaperone HSP104 and r 95.6 0.064 1.4E-06 61.9 10.1 101 63-177 563-671 (898)
397 PF08433 KTI12: Chromatin asso 95.6 0.017 3.6E-07 58.2 4.9 24 85-108 2-25 (270)
398 TIGR03575 selen_PSTK_euk L-ser 95.5 0.05 1.1E-06 56.4 8.4 36 87-124 2-37 (340)
399 PRK12726 flagellar biosynthesi 95.5 0.082 1.8E-06 55.0 9.7 89 83-176 205-295 (407)
400 cd01125 repA Hexameric Replica 95.5 0.13 2.9E-06 51.3 11.2 23 86-108 3-25 (239)
401 PRK06217 hypothetical protein; 95.5 0.025 5.4E-07 53.8 5.7 24 85-108 2-25 (183)
402 TIGR02655 circ_KaiC circadian 95.5 0.081 1.7E-06 58.7 10.5 99 72-176 250-363 (484)
403 PTZ00494 tuzin-like protein; P 95.5 0.29 6.4E-06 51.3 13.4 163 59-231 368-544 (664)
404 KOG0651 26S proteasome regulat 95.5 0.055 1.2E-06 53.5 7.8 26 83-108 165-190 (388)
405 cd02025 PanK Pantothenate kina 95.5 0.062 1.3E-06 52.6 8.4 23 86-108 1-23 (220)
406 TIGR01360 aden_kin_iso1 adenyl 95.5 0.013 2.7E-07 56.2 3.6 26 83-108 2-27 (188)
407 PRK10416 signal recognition pa 95.4 0.11 2.5E-06 53.6 10.7 38 83-123 113-150 (318)
408 cd01135 V_A-ATPase_B V/A-type 95.4 0.059 1.3E-06 53.6 8.2 102 83-184 68-185 (276)
409 PRK05703 flhF flagellar biosyn 95.4 0.1 2.2E-06 56.4 10.7 87 84-175 221-308 (424)
410 PF00625 Guanylate_kin: Guanyl 95.4 0.021 4.6E-07 54.3 4.9 37 84-123 2-38 (183)
411 PRK03839 putative kinase; Prov 95.4 0.012 2.7E-07 55.7 3.3 23 86-108 2-24 (180)
412 cd01122 GP4d_helicase GP4d_hel 95.4 0.12 2.5E-06 52.9 10.6 53 83-139 29-81 (271)
413 PRK08972 fliI flagellum-specif 95.4 0.031 6.6E-07 59.5 6.3 90 83-177 161-263 (444)
414 TIGR01069 mutS2 MutS2 family p 95.3 0.012 2.5E-07 68.6 3.3 25 83-107 321-345 (771)
415 PRK04040 adenylate kinase; Pro 95.3 0.015 3.2E-07 55.3 3.5 25 84-108 2-26 (188)
416 COG0529 CysC Adenylylsulfate k 95.3 0.022 4.9E-07 51.5 4.3 26 83-108 22-47 (197)
417 PRK15453 phosphoribulokinase; 95.3 0.092 2E-06 52.3 9.0 26 83-108 4-29 (290)
418 TIGR00764 lon_rel lon-related 95.3 0.051 1.1E-06 61.7 8.3 74 62-141 18-91 (608)
419 COG3854 SpoIIIAA ncharacterize 95.3 0.063 1.4E-06 50.7 7.3 119 74-200 128-252 (308)
420 TIGR03878 thermo_KaiC_2 KaiC d 95.3 0.044 9.6E-07 55.2 7.1 41 83-126 35-75 (259)
421 PRK00889 adenylylsulfate kinas 95.3 0.022 4.7E-07 53.8 4.5 26 83-108 3-28 (175)
422 TIGR00416 sms DNA repair prote 95.3 0.066 1.4E-06 58.5 8.8 52 72-126 81-133 (454)
423 PRK05986 cob(I)alamin adenolsy 95.3 0.089 1.9E-06 49.3 8.3 115 83-201 21-158 (191)
424 TIGR01425 SRP54_euk signal rec 95.3 0.075 1.6E-06 56.8 8.9 38 83-123 99-136 (429)
425 PRK10875 recD exonuclease V su 95.3 0.12 2.6E-06 58.5 10.8 116 84-199 167-300 (615)
426 COG0714 MoxR-like ATPases [Gen 95.2 0.04 8.7E-07 57.9 6.8 63 62-133 24-86 (329)
427 PRK06002 fliI flagellum-specif 95.2 0.048 1E-06 58.4 7.3 90 83-177 164-265 (450)
428 PRK00131 aroK shikimate kinase 95.2 0.017 3.7E-07 54.5 3.7 25 84-108 4-28 (175)
429 PRK12723 flagellar biosynthesi 95.2 0.19 4.2E-06 53.3 11.7 90 83-176 173-264 (388)
430 cd00267 ABC_ATPase ABC (ATP-bi 95.2 0.045 9.8E-07 50.5 6.4 111 84-205 25-144 (157)
431 PRK12597 F0F1 ATP synthase sub 95.2 0.043 9.4E-07 59.2 6.9 92 83-176 142-247 (461)
432 COG2274 SunT ABC-type bacterio 95.2 0.069 1.5E-06 61.3 8.9 26 83-108 498-523 (709)
433 COG4240 Predicted kinase [Gene 95.2 0.1 2.3E-06 49.1 8.3 86 80-167 46-134 (300)
434 cd02028 UMPK_like Uridine mono 95.2 0.039 8.5E-07 52.1 5.9 23 86-108 1-23 (179)
435 cd01130 VirB11-like_ATPase Typ 95.2 0.029 6.4E-07 53.4 5.0 94 84-184 25-118 (186)
436 TIGR01359 UMP_CMP_kin_fam UMP- 95.2 0.014 3.1E-07 55.5 2.9 23 86-108 1-23 (183)
437 PRK00625 shikimate kinase; Pro 95.2 0.016 3.6E-07 54.0 3.2 23 86-108 2-24 (173)
438 PRK08927 fliI flagellum-specif 95.1 0.14 3.1E-06 54.8 10.5 90 83-177 157-259 (442)
439 PRK12724 flagellar biosynthesi 95.1 0.077 1.7E-06 56.2 8.3 25 84-108 223-247 (432)
440 TIGR02868 CydC thiol reductant 95.1 0.068 1.5E-06 60.5 8.7 26 83-108 360-385 (529)
441 PF03969 AFG1_ATPase: AFG1-lik 95.1 0.028 6.1E-07 59.1 5.2 103 83-202 61-168 (362)
442 cd01136 ATPase_flagellum-secre 95.1 0.19 4.1E-06 51.8 10.9 90 83-177 68-170 (326)
443 PF14532 Sigma54_activ_2: Sigm 95.1 0.019 4.1E-07 51.6 3.3 44 65-108 1-45 (138)
444 cd00227 CPT Chloramphenicol (C 95.1 0.02 4.4E-07 54.0 3.6 24 85-108 3-26 (175)
445 PRK00279 adk adenylate kinase; 95.1 0.034 7.3E-07 54.5 5.3 23 86-108 2-24 (215)
446 cd01134 V_A-ATPase_A V/A-type 95.1 0.23 5E-06 51.1 11.2 60 73-137 146-206 (369)
447 PRK05922 type III secretion sy 95.1 0.057 1.2E-06 57.7 7.2 90 83-177 156-258 (434)
448 PRK09280 F0F1 ATP synthase sub 95.1 0.061 1.3E-06 57.8 7.4 93 83-177 143-249 (463)
449 TIGR03574 selen_PSTK L-seryl-t 95.0 0.027 5.9E-07 56.6 4.6 23 86-108 1-23 (249)
450 PRK03846 adenylylsulfate kinas 95.0 0.03 6.6E-07 54.0 4.7 26 83-108 23-48 (198)
451 COG3640 CooC CO dehydrogenase 95.0 0.041 8.9E-07 52.3 5.3 43 86-130 2-44 (255)
452 cd03217 ABC_FeS_Assembly ABC-t 95.0 0.09 2E-06 50.8 8.0 25 83-107 25-49 (200)
453 COG0396 sufC Cysteine desulfur 95.0 0.15 3.3E-06 48.5 9.0 59 156-214 152-217 (251)
454 COG1419 FlhF Flagellar GTP-bin 95.0 0.19 4.2E-06 52.5 10.6 59 84-143 203-262 (407)
455 COG1936 Predicted nucleotide k 95.0 0.02 4.2E-07 51.8 3.0 20 86-105 2-21 (180)
456 PRK13543 cytochrome c biogenes 95.0 0.18 4E-06 49.2 10.2 26 83-108 36-61 (214)
457 cd01132 F1_ATPase_alpha F1 ATP 95.0 0.11 2.5E-06 51.6 8.6 97 83-184 68-180 (274)
458 TIGR02322 phosphon_PhnN phosph 95.0 0.021 4.6E-07 54.1 3.4 24 85-108 2-25 (179)
459 cd00071 GMPK Guanosine monopho 95.0 0.021 4.6E-07 51.1 3.2 23 86-108 1-23 (137)
460 COG2842 Uncharacterized ATPase 95.0 0.12 2.7E-06 51.2 8.6 106 61-178 71-177 (297)
461 TIGR03498 FliI_clade3 flagella 95.0 0.14 3E-06 54.9 9.7 91 83-177 139-241 (418)
462 KOG3928 Mitochondrial ribosome 95.0 0.55 1.2E-05 48.7 13.4 59 209-267 402-460 (461)
463 cd02023 UMPK Uridine monophosp 94.9 0.018 3.8E-07 55.7 2.9 23 86-108 1-23 (198)
464 COG3910 Predicted ATPase [Gene 94.9 0.44 9.5E-06 43.8 11.3 26 83-108 36-61 (233)
465 PHA02244 ATPase-like protein 94.9 0.053 1.2E-06 56.2 6.3 45 61-108 95-143 (383)
466 KOG0737 AAA+-type ATPase [Post 94.9 0.47 1E-05 48.5 12.8 53 62-117 92-157 (386)
467 cd02021 GntK Gluconate kinase 94.9 0.019 4E-07 52.6 2.8 23 86-108 1-23 (150)
468 cd02024 NRK1 Nicotinamide ribo 94.9 0.019 4.1E-07 54.2 2.8 23 86-108 1-23 (187)
469 COG0003 ArsA Predicted ATPase 94.9 0.039 8.4E-07 56.7 5.3 49 84-135 2-50 (322)
470 PLN02348 phosphoribulokinase 94.9 0.061 1.3E-06 56.3 6.7 38 71-108 36-73 (395)
471 PF13245 AAA_19: Part of AAA d 94.9 0.045 9.7E-07 43.0 4.4 25 84-108 10-34 (76)
472 cd03369 ABCC_NFT1 Domain 2 of 94.9 0.27 6E-06 47.7 11.0 26 83-108 33-58 (207)
473 PRK14721 flhF flagellar biosyn 94.8 0.15 3.3E-06 54.5 9.6 88 83-175 190-278 (420)
474 TIGR02524 dot_icm_DotB Dot/Icm 94.8 0.05 1.1E-06 57.3 5.9 108 84-198 134-243 (358)
475 PRK14529 adenylate kinase; Pro 94.8 0.12 2.6E-06 50.3 8.0 82 86-176 2-86 (223)
476 TIGR01351 adk adenylate kinase 94.8 0.039 8.4E-07 53.8 4.8 22 87-108 2-23 (210)
477 PF01078 Mg_chelatase: Magnesi 94.8 0.05 1.1E-06 51.5 5.2 44 62-108 3-46 (206)
478 COG1124 DppF ABC-type dipeptid 94.7 0.039 8.5E-07 52.9 4.4 26 83-108 32-57 (252)
479 COG2401 ABC-type ATPase fused 94.7 0.047 1E-06 56.2 5.2 152 64-215 373-582 (593)
480 cd03281 ABC_MSH5_euk MutS5 hom 94.7 0.033 7.2E-07 54.2 4.1 23 84-106 29-51 (213)
481 cd02029 PRK_like Phosphoribulo 94.7 0.1 2.2E-06 51.6 7.3 23 86-108 1-23 (277)
482 COG0467 RAD55 RecA-superfamily 94.7 0.039 8.5E-07 55.8 4.8 51 82-137 21-71 (260)
483 PF02367 UPF0079: Uncharacteri 94.7 0.051 1.1E-06 47.0 4.7 25 84-108 15-39 (123)
484 PF00560 LRR_1: Leucine Rich R 94.7 0.017 3.6E-07 32.9 1.2 21 466-487 1-21 (22)
485 PRK12339 2-phosphoglycerate ki 94.7 0.031 6.7E-07 53.4 3.7 26 83-108 2-27 (197)
486 PRK09302 circadian clock prote 94.7 0.19 4.1E-06 56.5 10.6 88 83-176 272-373 (509)
487 PRK13407 bchI magnesium chelat 94.7 0.042 9E-07 57.1 4.9 46 62-108 8-53 (334)
488 cd02020 CMPK Cytidine monophos 94.7 0.024 5.2E-07 51.7 2.9 23 86-108 1-23 (147)
489 TIGR00073 hypB hydrogenase acc 94.7 0.053 1.1E-06 52.7 5.4 32 77-108 15-46 (207)
490 PF13504 LRR_7: Leucine rich r 94.7 0.02 4.4E-07 30.2 1.3 16 490-505 2-17 (17)
491 PF05970 PIF1: PIF1-like helic 94.7 0.064 1.4E-06 57.1 6.4 38 70-108 9-46 (364)
492 PRK08149 ATP synthase SpaL; Va 94.6 0.22 4.8E-06 53.2 10.3 89 83-177 150-252 (428)
493 PRK09099 type III secretion sy 94.6 0.2 4.2E-06 54.0 9.9 91 83-177 162-264 (441)
494 PRK14737 gmk guanylate kinase; 94.6 0.032 6.9E-07 52.9 3.6 26 83-108 3-28 (186)
495 PF02374 ArsA_ATPase: Anion-tr 94.6 0.032 6.9E-07 57.5 3.9 46 85-133 2-47 (305)
496 PRK10751 molybdopterin-guanine 94.6 0.066 1.4E-06 49.6 5.5 26 83-108 5-30 (173)
497 KOG0927 Predicted transporter 94.6 0.064 1.4E-06 57.3 5.9 33 84-116 101-133 (614)
498 cd01672 TMPK Thymidine monopho 94.5 0.065 1.4E-06 51.7 5.8 24 85-108 1-24 (200)
499 TIGR03305 alt_F1F0_F1_bet alte 94.5 0.16 3.4E-06 54.6 8.9 93 83-177 137-243 (449)
500 PRK13949 shikimate kinase; Pro 94.5 0.032 7E-07 52.0 3.4 24 85-108 2-25 (169)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-89 Score=777.27 Aligned_cols=766 Identities=42% Similarity=0.735 Sum_probs=642.4
Q ss_pred ccccccCCCCCCCcchhcHHHHHHHHHHHHHHHHHhCCceeeeccC-CCCCCCccccCCCCCcc-cchhHHHHHHHHHhc
Q 041843 2 IDKLCLGGYCSRNCKSSYKFGRKVAKMLRDVRALKGDGVFEEVAAP-APESISVADERPTEPTV-VGLQSQLEQVWRCLV 79 (800)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-vgr~~~~~~l~~~l~ 79 (800)
.++-|+.++|..+...-|++++++-+++++++.+..++.+..++.. .+. +....+|..+.- ||.+..++++.+.|.
T Consensus 98 ~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~--~~~e~~~~~~~~~VG~e~~~~kl~~~L~ 175 (889)
T KOG4658|consen 98 RQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPR--EKVETRPIQSESDVGLETMLEKLWNRLM 175 (889)
T ss_pred HHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccch--hhcccCCCCccccccHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999988877776642 222 223333333333 999999999999999
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 041843 80 QEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDI 159 (800)
Q Consensus 80 ~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 159 (800)
++ +..+++|+||||+||||||++++++...+..+|+.++||.||+.++...++++|+..++...+.......++.+..+
T Consensus 176 ~d-~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i 254 (889)
T KOG4658|consen 176 ED-DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKL 254 (889)
T ss_pred cC-CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHH
Confidence 88 44999999999999999999999999448999999999999999999999999999998766555566668889999
Q ss_pred HHHhcCCceEEEEccccchhhhhhcCCcCCC---CcEEEEEeCCcccccc-cCccceEEeccCChHHHHHHHHHHhCccc
Q 041843 160 FKTLSKKKFALLLDDLWERVDLKKIGVPLPK---NSAVVFTTRFVDVCGG-MEARRKFKVACLSDEDAWELFREKVGEET 235 (800)
Q Consensus 160 ~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~---~s~iivTtR~~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~ 235 (800)
.+.|+++|++||+||||+..+|+.++.+++. |++|++|||+..|+.. +++...++++.|+.+|||.+|.+.++...
T Consensus 255 ~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~ 334 (889)
T KOG4658|consen 255 LNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNT 334 (889)
T ss_pred HHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccc
Confidence 9999999999999999999999999999887 6999999999999988 78888999999999999999999999886
Q ss_pred ccCCCChHHHHHHHHHHhCCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhh-hhccCCChhHHHHHHhhhccCCChhhHH
Q 041843 236 IESHHSIPQLAQTVAKECGGLPLALIIIGRAMAYKKTPEEWRYAIEVLRRS-ASEFAGLGKEVYSLLKFSYDCLPNDAIR 314 (800)
Q Consensus 236 ~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~-~~~~~~~~~~i~~~l~~sy~~L~~~~~k 314 (800)
....+.++++|++++++|+|+|||++++|+.|+.+.+.++|+++.+.+.+. ..+.+++.+.++.++++||+.||+ ++|
T Consensus 335 ~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK 413 (889)
T KOG4658|consen 335 LGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELK 413 (889)
T ss_pred ccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHH
Confidence 666677999999999999999999999999999999999999999998887 666677788999999999999995 999
Q ss_pred HHHhHhccCCCCcccchHHHHHHHHhcCCcccc--ccchhhhHHHHHHHHHHhccccccc----CCcEEEehHHHHHHHH
Q 041843 315 SCFLYCCLYPEDYSIDKRDLIDCWMCEGFLEED--KFGTQNRGSHIVTTLVRACLLEEVE----DDQVKMHDVVRDMALW 388 (800)
Q Consensus 315 ~c~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~--~~~~~~~~~~~~~~L~~~~ll~~~~----~~~~~~h~l~~~~~~~ 388 (800)
.||+|||+||+||.|+++.++.+|+||||+.+. +..+++.|+.++.+|++++|+.... ...|+|||++|++|.+
T Consensus 414 ~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ 493 (889)
T KOG4658|consen 414 SCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALW 493 (889)
T ss_pred HHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHH
Confidence 999999999999999999999999999999885 6788999999999999999998864 3789999999999999
Q ss_pred HHhhhhcccccEEEEcCCCccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCC--CcccccccccCCCC
Q 041843 389 ITCEIEKEKEGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNP--LRTITGGFFQSMPC 466 (800)
Q Consensus 389 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~--l~~~~~~~~~~l~~ 466 (800)
++++.+.+.++.++..+.+..+. +....|...|++++.+|.+..++.-..+++|++|.+.+|. +..++..||..|+.
T Consensus 494 ias~~~~~~e~~iv~~~~~~~~~-~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~ 572 (889)
T KOG4658|consen 494 IASDFGKQEENQIVSDGVGLSEI-PQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPL 572 (889)
T ss_pred HhccccccccceEEECCcCcccc-ccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcc
Confidence 99987777788777776666665 6667789999999999999999988899999999999997 78899999999999
Q ss_pred CcEEEccCccccccccccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeee
Q 041843 467 LTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFA 546 (800)
Q Consensus 467 L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~ 546 (800)
|++|||++|..+..+|++|++|.|||||+++++.++.+|.++++|.+|.+|++..+..+..+| ++...|++|++|.+..
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPR 651 (889)
T ss_pred eEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeec
Confidence 999999999999999999999999999999999999999999999999999999887766664 4467799999999988
Q ss_pred cCCCCCCcccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceE
Q 041843 547 TGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTL 626 (800)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L 626 (800)
.....+. ....++.+|++|+.+.+.......+..+.....+.++.+.+.+.++. ......++..+.+|+.|
T Consensus 652 s~~~~~~-------~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~--~~~~~~~~~~l~~L~~L 722 (889)
T KOG4658|consen 652 SALSNDK-------LLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCS--KRTLISSLGSLGNLEEL 722 (889)
T ss_pred cccccch-------hhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccc--cceeecccccccCcceE
Confidence 7633222 57788888899998888766654445555555666666666654422 12223567889999999
Q ss_pred EeeccCCcceEEeccccccccCCCCc-CCCCccEEeeecCCCCCCChhhhcCCCCcEEEEecCcchhHhhccCCCCCcCc
Q 041843 627 YFRSCDWIKGLKIDYKDMVQKSRQPC-VFRSLEEVTVDNCGNLKHLTFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPE 705 (800)
Q Consensus 627 ~l~~~~~~~~l~~~~~~~~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 705 (800)
.+.+|...+.. ..+... .... .|+++.++.+.+|.....+.|....|+|+.|.+..|..++++..........
T Consensus 723 ~i~~~~~~e~~-~~~~~~----~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l- 796 (889)
T KOG4658|consen 723 SILDCGISEIV-IEWEES----LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL- 796 (889)
T ss_pred EEEcCCCchhh-cccccc----cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhc-
Confidence 99999876532 222211 0111 2678999999999999999999999999999999999988876532221100
Q ss_pred ccCccCCcCCcccEe-eccCcccccccCCCCCCCCCcceEeecCCCCCCCCCCCCCC-CCC--cceEEEeehhcccccee
Q 041843 706 MTGIISSPFAKLQHL-QLGGLGRLKSIYWKPLPLPRLKELTVVDCDSLEKLPLDSNS-ANG--RRILIRGDEDWWRRLQW 781 (800)
Q Consensus 706 l~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~L~~L~~~~n~-~~l--~~~~i~~~~~~~~~l~~ 781 (800)
......|++++.+ .+.+.+.+..+.+.+..++.|+.+.+..||++..+|..... ... ..+....+.+|.+.++|
T Consensus 797 --~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~ 874 (889)
T KOG4658|consen 797 --KELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYW 874 (889)
T ss_pred --ccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEe
Confidence 0123457788888 68888888888888888899999999999999999986543 222 12222244567999999
Q ss_pred cchhhhhhc
Q 041843 782 EDEATQNAF 790 (800)
Q Consensus 782 ~~~~~~~~~ 790 (800)
.++..+...
T Consensus 875 ~~~~~~~~~ 883 (889)
T KOG4658|consen 875 EDELTKLRF 883 (889)
T ss_pred hhhhhhhhc
Confidence 998776644
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.2e-63 Score=595.02 Aligned_cols=640 Identities=20% Similarity=0.281 Sum_probs=455.9
Q ss_pred CCcccchhHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE---cCc----------
Q 041843 61 EPTVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV---SKD---------- 126 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~---~~~---------- 126 (800)
...+|||+++++++..++.. .+++++|+||||||+||||||+++|++. ...|+..+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhccccccc
Confidence 46799999999999998853 3478999999999999999999999988 678898888752 111
Q ss_pred -cC-HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchhhhhhcCCc---CCCCcEEEEEeCCc
Q 041843 127 -LQ-LEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERVDLKKIGVP---LPKNSAVVFTTRFV 201 (800)
Q Consensus 127 -~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~---~~~~s~iivTtR~~ 201 (800)
.+ ...++..++..+..... ..... ...+++.+.++|+||||||||+..+|+.+... ++.|++||||||++
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 01 12344444444322110 01111 24577889999999999999999888887543 45699999999999
Q ss_pred ccccccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHHhcCCCHHHHHHHHH
Q 041843 202 DVCGGMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAMAYKKTPEEWRYAIE 281 (800)
Q Consensus 202 ~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~ 281 (800)
.++..++..++|+++.++.++|++||.++|+... .+++++.+++++|+++|+|+||||+++|++|+. ++..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9987777788999999999999999999998765 334567899999999999999999999999987 67899999999
Q ss_pred HHHhhhhccCCChhHHHHHHhhhccCCChhhHHHHHhHhccCCCCcccchHHHHHHHHhcCCccccccchhhhHHHHHHH
Q 041843 282 VLRRSASEFAGLGKEVYSLLKFSYDCLPNDAIRSCFLYCCLYPEDYSIDKRDLIDCWMCEGFLEEDKFGTQNRGSHIVTT 361 (800)
Q Consensus 282 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~ 361 (800)
.++... +..|..+|++||+.|+++..|.||+++|+|+.++.++ .+..|.+.+.... ...++.
T Consensus 413 ~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~---------~~~l~~ 474 (1153)
T PLN03210 413 RLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV---------NIGLKN 474 (1153)
T ss_pred HHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc---------hhChHH
Confidence 887543 3579999999999998746899999999999887554 3556776654322 234889
Q ss_pred HHHhcccccccCCcEEEehHHHHHHHHHHhhhh--cccccEEEEc----------------------CCCc---------
Q 041843 362 LVRACLLEEVEDDQVKMHDVVRDMALWITCEIE--KEKEGFLVYA----------------------GSGL--------- 408 (800)
Q Consensus 362 L~~~~ll~~~~~~~~~~h~l~~~~~~~i~~~~~--~~~~~~~~~~----------------------~~~~--------- 408 (800)
|++++|++.. .+++.|||++|+||++++.++. +.++.++... ....
T Consensus 475 L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a 553 (1153)
T PLN03210 475 LVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA 553 (1153)
T ss_pred HHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence 9999999875 5789999999999999986542 1111111100 0000
Q ss_pred ------------------------cccCcccccc-ccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccC
Q 041843 409 ------------------------TEAPADVRGW-EMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQS 463 (800)
Q Consensus 409 ------------------------~~~~~~~~~~-~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 463 (800)
..+|..+..+ .+++.|.+.++.+..+|......+|+.|++.+|.+..++.+ +..
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~ 632 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHS 632 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-ccc
Confidence 0112222222 24666777777777777655678888888888888877766 578
Q ss_pred CCCCcEEEccCccccccccccccccccccEEeccCC-CCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEE
Q 041843 464 MPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYT-SVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVL 542 (800)
Q Consensus 464 l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L 542 (800)
+++|++|+|+++..+..+|. ++.+++|++|++++| .+..+|..++++++|+.|++++|+.+..+|.. + ++++|++|
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L 709 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRL 709 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEE
Confidence 88899999988867778874 788889999999887 67778888889999999999988888888875 3 78889999
Q ss_pred EeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCcc------ccccC
Q 041843 543 RMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREES------IGVAD 616 (800)
Q Consensus 543 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~------~~~~~ 616 (800)
++++|.... ..+. ..++|+.|+++.|.+..++... ....+..|.+.++..... .....
T Consensus 710 ~Lsgc~~L~---------~~p~---~~~nL~~L~L~~n~i~~lP~~~----~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 710 NLSGCSRLK---------SFPD---ISTNISWLDLDETAIEEFPSNL----RLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred eCCCCCCcc---------cccc---ccCCcCeeecCCCccccccccc----cccccccccccccchhhccccccccchhh
Confidence 988885432 1221 1356777888777765544322 123444454443221100 00001
Q ss_pred cCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCChhhhcCCCCcEEEEecCcchhHhhc
Q 041843 617 LADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTFLVFAPNLKSISVRDCDDMEEIIS 696 (800)
Q Consensus 617 l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~ 696 (800)
...+++|+.|++++|.....+|..+. .+++|+.|++++|.+++.+|....+++|+.|++++|..++.++.
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~----------~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQ----------NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhh----------CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence 11235677777777665555444332 35677777777776666666544567777777777766654432
Q ss_pred cCC-CCC-------cCcccCccCCcCCcccEeeccCcccccccCCCCCCCCCcceEeecCCCCCCCCCCCCC
Q 041843 697 AGE-FDD-------IPEMTGIISSPFAKLQHLQLGGLGRLKSIYWKPLPLPRLKELTVVDCDSLEKLPLDSN 760 (800)
Q Consensus 697 ~~~-~~~-------~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~L~~L~~~~n 760 (800)
... ... +..+. .....+++|+.|.+.+|++++.++.....+++|+.+.+.+|++|+.+++...
T Consensus 844 ~~~nL~~L~Ls~n~i~~iP-~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~ 914 (1153)
T PLN03210 844 ISTNISDLNLSRTGIEEVP-WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGS 914 (1153)
T ss_pred cccccCEeECCCCCCccCh-HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCC
Confidence 110 000 00000 1345688999999999999999998888899999999999999998877543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=9.7e-43 Score=360.97 Aligned_cols=279 Identities=35% Similarity=0.656 Sum_probs=228.7
Q ss_pred hhHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCC
Q 041843 67 LQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTD 145 (800)
Q Consensus 67 r~~~~~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 145 (800)
||.++++|.+.|.+ +++.++|+|+|+||+||||||++++++. ..+.+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999988 3478999999999999999999999995 348899999999999999999999999999987644
Q ss_pred CC-CCCCHHHHHHHHHHHhcCCceEEEEccccchhhhhhcCCcCCC---CcEEEEEeCCcccccccCc-cceEEeccCCh
Q 041843 146 SW-KSKSLEEKAQDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPK---NSAVVFTTRFVDVCGGMEA-RRKFKVACLSD 220 (800)
Q Consensus 146 ~~-~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~---~s~iivTtR~~~~~~~~~~-~~~~~l~~L~~ 220 (800)
.. ...+.++....+.+.+.++++||||||||+...|+.+...++. |++||||||+..++..+.. ...+++++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33 5677888999999999999999999999999999887665543 8999999999988876654 67899999999
Q ss_pred HHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhccCCChhHHHHH
Q 041843 221 EDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAMAYKKTPEEWRYAIEVLRRSASEFAGLGKEVYSL 300 (800)
Q Consensus 221 ~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~ 300 (800)
+||++||.+.++.......+..++.+++|+++|+|+||||+++|++|+.+.+..+|+..++.+........+....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999765523345557889999999999999999999999766678999999988887765544456789999
Q ss_pred HhhhccCCChhhHHHHHhHhccCCCCcccchHHHHHHHHhcCCcccc
Q 041843 301 LKFSYDCLPNDAIRSCFLYCCLYPEDYSIDKRDLIDCWMCEGFLEED 347 (800)
Q Consensus 301 l~~sy~~L~~~~~k~c~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~ 347 (800)
+..||+.|++ ++|.||+||++||+++.|+++.++++|+++|+|...
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999 899999999999999999999999999999998763
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=7.1e-24 Score=257.33 Aligned_cols=377 Identities=19% Similarity=0.178 Sum_probs=238.3
Q ss_pred cEEEEcCCCcc-ccCcccc-ccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 399 GFLVYAGSGLT-EAPADVR-GWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 399 ~~~~~~~~~~~-~~~~~~~-~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
+.+...+..+. .+|..+. .++++++|++++|.+....+...+++|++|++++|.+....+..++.+++|++|++++|.
T Consensus 96 ~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 96 QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred CEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 34444444443 4555443 667788888887777543334567788888888887765555557788888888888885
Q ss_pred ccccccccccccccccEEeccCCCCcc-cchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcc
Q 041843 477 MLRQLPTGISKLVSLQLLDISYTSVTG-LPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRF 555 (800)
Q Consensus 477 ~~~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~ 555 (800)
....+|..++++++|++|++++|.+.. +|..++++++|++|++++|.....+|.. ++++++|++|++.+|.+..
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~---- 250 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTG---- 250 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceecc----
Confidence 556778888888888888888887765 6778888888888888877665667766 6788888888888877654
Q ss_pred cccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcc
Q 041843 556 SSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIK 635 (800)
Q Consensus 556 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 635 (800)
..+..++++++|+.|+++.|.+.... .........++.|++.++......+ ..+..+++|+.|++++|....
T Consensus 251 -----~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 251 -----PIPSSLGNLKNLQYLFLYQNKLSGPI--PPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred -----ccChhHhCCCCCCEEECcCCeeeccC--chhHhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCC
Confidence 56667788888888888877654311 1111123467777777665433322 446677888888888876655
Q ss_pred eEEeccccccccCCCCcCCCCccEEeeecCCCCCCCh-hhhcCCCCcEEEEecCcchhHhhccCC-CCCcC-------cc
Q 041843 636 GLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLT-FLVFAPNLKSISVRDCDDMEEIISAGE-FDDIP-------EM 706 (800)
Q Consensus 636 ~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~-~~~~~-------~l 706 (800)
.++..+ ..+++|+.|++++|.-...++ .++.+++|+.|++++|.....++..-. ...+. .+
T Consensus 323 ~~~~~~----------~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 323 KIPVAL----------TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred cCChhH----------hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence 433333 246788888888875433444 467778888888887653322211000 00000 01
Q ss_pred cC---ccCCcCCcccEeeccCcccccccCCCCCCCCCcceEeecC-------------CCCCCCCCCCCCCCCCcceEEE
Q 041843 707 TG---IISSPFAKLQHLQLGGLGRLKSIYWKPLPLPRLKELTVVD-------------CDSLEKLPLDSNSANGRRILIR 770 (800)
Q Consensus 707 ~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~-------------c~~L~~L~~~~n~~~l~~~~i~ 770 (800)
.+ .....+++|+.|.+.++.--..++.....+++|+.|++++ +++|+.|.++.|..........
T Consensus 393 ~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 472 (968)
T PLN00113 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472 (968)
T ss_pred cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc
Confidence 11 1234567788888877654445555556677888888765 4455555555554332222222
Q ss_pred eehhccccceecchhhhhhcccccccCCC
Q 041843 771 GDEDWWRRLQWEDEATQNAFRLCFQSLDE 799 (800)
Q Consensus 771 ~~~~~~~~l~~~~~~~~~~~~~~f~~~~~ 799 (800)
+ ...++.|+..+|.+...++..|..+..
T Consensus 473 ~-~~~L~~L~ls~n~l~~~~~~~~~~l~~ 500 (968)
T PLN00113 473 G-SKRLENLDLSRNQFSGAVPRKLGSLSE 500 (968)
T ss_pred c-cccceEEECcCCccCCccChhhhhhhc
Confidence 1 134677888888888877777765544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=6.2e-24 Score=257.83 Aligned_cols=363 Identities=19% Similarity=0.178 Sum_probs=180.3
Q ss_pred cCccccccccceEEEccccccC-CCC-CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccccccccc
Q 041843 411 APADVRGWEMGRRLSLMKNSIG-NLP-TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKL 488 (800)
Q Consensus 411 ~~~~~~~~~~l~~l~l~~~~~~-~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L 488 (800)
+|..+..+.+++.|++++|.+. .+| .+.++++|++|++++|.+....+..+.++++|++|++++|.....+|..++++
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 3444555556666666655542 333 34555666666666665554444445556666666666654344555556666
Q ss_pred ccccEEeccCCCCcc-cchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhh
Q 041843 489 VSLQLLDISYTSVTG-LPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELL 567 (800)
Q Consensus 489 ~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 567 (800)
.+|++|++++|.+.. +|..++++++|++|++++|.....+|.. +.++++|++|++++|.+.. ..+..+.
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~---------~~p~~~~ 305 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSG---------EIPELVI 305 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeecc---------CCChhHc
Confidence 666666666665543 5555666666666666655444444544 4556666666666555443 3444555
Q ss_pred CCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEecccccc--
Q 041843 568 GLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMV-- 645 (800)
Q Consensus 568 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~-- 645 (800)
++++|+.|+++.|.+..... ......+.++.|.+.++......+ ..+..+++|+.|++++|.....++..+....
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIP--VALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred CCCCCcEEECCCCccCCcCC--hhHhcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 56666666666555432110 011112355566665554332222 3455566666666666654433332221100
Q ss_pred ------------ccCCCCcCCCCccEEeeecCCCCCCCh-hhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCC
Q 041843 646 ------------QKSRQPCVFRSLEEVTVDNCGNLKHLT-FLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISS 712 (800)
Q Consensus 646 ------------~l~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~ 712 (800)
..+.....+++|+.|++++|.-...++ .+..+++|+.|++++|.....+. ....
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~~~ 449 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN-------------SRKW 449 (968)
T ss_pred CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC-------------hhhc
Confidence 001111123444444444442211121 23344444444444433111110 1223
Q ss_pred cCCcccEeeccCcccccccCCCCCCCCCcceEeecCC-------------CCCCCCCCCCCCCCCcceEEEeehhccccc
Q 041843 713 PFAKLQHLQLGGLGRLKSIYWKPLPLPRLKELTVVDC-------------DSLEKLPLDSNSANGRRILIRGDEDWWRRL 779 (800)
Q Consensus 713 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c-------------~~L~~L~~~~n~~~l~~~~i~~~~~~~~~l 779 (800)
.+++|+.|.+.+|.-...++... ..++|+.|++++| ++|+.|.++.|..........+....++.|
T Consensus 450 ~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 528 (968)
T PLN00113 450 DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528 (968)
T ss_pred cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEE
Confidence 46777777777765444444322 3466777776653 334444444443332222222223446677
Q ss_pred eecchhhhhhcccccccCCCC
Q 041843 780 QWEDEATQNAFRLCFQSLDEL 800 (800)
Q Consensus 780 ~~~~~~~~~~~~~~f~~~~~l 800 (800)
+..+|.+...++..|..+..|
T Consensus 529 ~Ls~N~l~~~~p~~~~~l~~L 549 (968)
T PLN00113 529 DLSHNQLSGQIPASFSEMPVL 549 (968)
T ss_pred ECCCCcccccCChhHhCcccC
Confidence 888888888787777665543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.9e-23 Score=213.82 Aligned_cols=327 Identities=21% Similarity=0.274 Sum_probs=229.5
Q ss_pred ccEEEEcCCCccccCccccccccceEEEccccccCCCC-CCCCCCcceEEEeecCCCc--ccccccccCCCCCcEEEccC
Q 041843 398 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP-TVPTCPHLLTLFLNDNPLR--TITGGFFQSMPCLTVLKMSD 474 (800)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~Ls~ 474 (800)
-.++.....++..+|..+..+.++.+|++.+|.+..+- .++.++.||.+++..|+++ ++|+++| .+..|.+||||+
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecch
Confidence 57888899999999999999999999999999986665 5788999999999999875 7888854 899999999999
Q ss_pred ccccccccccccccccccEEeccCCCCcccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCC
Q 041843 475 NIMLRQLPTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYG 553 (800)
Q Consensus 475 ~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~ 553 (800)
| .+.+.|..+..-+++-+|+||+|+|..+|.. +-+|..|-.|+|++| .+..+|+. +..|.+||+|.+++|.+..
T Consensus 113 N-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~h-- 187 (1255)
T KOG0444|consen 113 N-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNH-- 187 (1255)
T ss_pred h-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhH--
Confidence 9 8999999999999999999999999999986 468999999999965 57999998 7899999999999997654
Q ss_pred cccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCC
Q 041843 554 RFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDW 633 (800)
Q Consensus 554 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 633 (800)
.-...+..+++|+.|++++.+-+ +..+..+..-..++..++++.+.- ...+..+-.+++|+.|++++|..
T Consensus 188 -------fQLrQLPsmtsL~vLhms~TqRT-l~N~Ptsld~l~NL~dvDlS~N~L--p~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 188 -------FQLRQLPSMTSLSVLHMSNTQRT-LDNIPTSLDDLHNLRDVDLSENNL--PIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred -------HHHhcCccchhhhhhhcccccch-hhcCCCchhhhhhhhhccccccCC--CcchHHHhhhhhhheeccCcCce
Confidence 44556667777777777765432 223333333344566666655432 11224566778888888888875
Q ss_pred cceEEec---cc----------cccccCCCCcCCCCccEEeeecCC-CCCCCh-hhhcCCCCcEEEEecCcchhHhhccC
Q 041843 634 IKGLKID---YK----------DMVQKSRQPCVFRSLEEVTVDNCG-NLKHLT-FLVFAPNLKSISVRDCDDMEEIISAG 698 (800)
Q Consensus 634 ~~~l~~~---~~----------~~~~l~~~~~~~~~L~~L~l~~c~-~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~ 698 (800)
.+ +... |. .+..+|...+.+++|++|.+.++. +...+| .++.+.+|+++...++. ++
T Consensus 258 te-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LE------ 329 (1255)
T KOG0444|consen 258 TE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LE------ 329 (1255)
T ss_pred ee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cc------
Confidence 43 2211 11 011122222233444444443321 111122 13444444444443321 22
Q ss_pred CCCCcCcccCccCCcCCcccEeeccCcccccccCCCCCCCCCcceEeecCCCCCCCCC
Q 041843 699 EFDDIPEMTGIISSPFAKLQHLQLGGLGRLKSIYWKPLPLPRLKELTVVDCDSLEKLP 756 (800)
Q Consensus 699 ~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~L~~L~ 756 (800)
+.......+++|+.|.+. |+.|..+|.....+|.|+.|++.+-|+|..=|
T Consensus 330 -------lVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 330 -------LVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred -------cCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 122345567889998885 57888899888889999999999988887433
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=2.4e-20 Score=226.12 Aligned_cols=320 Identities=18% Similarity=0.245 Sum_probs=181.0
Q ss_pred ccceEEEccccccCCCC----CCCCCCcceEEEeecCCCc-------ccccccccCC-CCCcEEEccCcccccccccccc
Q 041843 419 EMGRRLSLMKNSIGNLP----TVPTCPHLLTLFLNDNPLR-------TITGGFFQSM-PCLTVLKMSDNIMLRQLPTGIS 486 (800)
Q Consensus 419 ~~l~~l~l~~~~~~~l~----~~~~~~~L~~L~l~~~~l~-------~~~~~~~~~l-~~L~~L~Ls~~~~~~~lp~~i~ 486 (800)
.+++.+.+....+..+. .|.++++|+.|.+..+... .+|.+ |..+ .+|++|++.++ .+..+|..+
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~-~l~~lP~~f- 608 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKY-PLRCMPSNF- 608 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCC-CCCCCCCcC-
Confidence 44555555444443221 2566666666666543211 12333 2233 34666666665 556666555
Q ss_pred ccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHh
Q 041843 487 KLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEEL 566 (800)
Q Consensus 487 ~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 566 (800)
...+|++|++++|.+..+|.++..+++|+.|++++|..++.+|. ++.+++|++|++.+|.... ..+..+
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~---------~lp~si 677 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV---------ELPSSI 677 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc---------ccchhh
Confidence 34566666666666666666666666666666666555555554 5566666666666654433 345555
Q ss_pred hCCCCCcEEEEEecc-chhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEecc----
Q 041843 567 LGLKYLEVLEITFRS-FEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDY---- 641 (800)
Q Consensus 567 ~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~---- 641 (800)
+++++|+.|+++.|. +..++... ..+.|+.|.+.+|......+ ...++|+.|++++|.. ..+|...
T Consensus 678 ~~L~~L~~L~L~~c~~L~~Lp~~i----~l~sL~~L~Lsgc~~L~~~p----~~~~nL~~L~L~~n~i-~~lP~~~~l~~ 748 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLEILPTGI----NLKSLYRLNLSGCSRLKSFP----DISTNISWLDLDETAI-EEFPSNLRLEN 748 (1153)
T ss_pred hccCCCCEEeCCCCCCcCccCCcC----CCCCCCEEeCCCCCCccccc----cccCCcCeeecCCCcc-ccccccccccc
Confidence 566666666665432 22222111 12345555555554322221 0123455555554432 1222111
Q ss_pred ---------------ccccccC-CCCcCCCCccEEeeecCCCCCCCh-hhhcCCCCcEEEEecCcchhHhhccCCCCCcC
Q 041843 642 ---------------KDMVQKS-RQPCVFRSLEEVTVDNCGNLKHLT-FLVFAPNLKSISVRDCDDMEEIISAGEFDDIP 704 (800)
Q Consensus 642 ---------------~~~~~l~-~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 704 (800)
.....++ .....+++|+.|++++|+.+..+| .++.+++|+.|+|++|..++.++...
T Consensus 749 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------ 822 (1153)
T PLN03210 749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------ 822 (1153)
T ss_pred cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------
Confidence 0000000 011235799999999998888776 48899999999999999888765421
Q ss_pred cccCccCCcCCcccEeeccCccccc--------------------ccCCCCCCCCCcceEeecCCCCCCCCCCCCCC-CC
Q 041843 705 EMTGIISSPFAKLQHLQLGGLGRLK--------------------SIYWKPLPLPRLKELTVVDCDSLEKLPLDSNS-AN 763 (800)
Q Consensus 705 ~l~~~~~~~~~~L~~L~l~~~~~l~--------------------~~~~~~~~~~~L~~L~l~~c~~L~~L~~~~n~-~~ 763 (800)
.+++|+.|.+++|..+. .++.....+++|+.|++.+|++|+.+|..... ..
T Consensus 823 --------~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 823 --------NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894 (1153)
T ss_pred --------CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence 34555555555555444 34444456889999999999999999986554 45
Q ss_pred CcceEEEeehhc
Q 041843 764 GRRILIRGDEDW 775 (800)
Q Consensus 764 l~~~~i~~~~~~ 775 (800)
++.+.+.+|...
T Consensus 895 L~~L~l~~C~~L 906 (1153)
T PLN03210 895 LETVDFSDCGAL 906 (1153)
T ss_pred CCeeecCCCccc
Confidence 667777777643
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=6.2e-21 Score=195.66 Aligned_cols=263 Identities=17% Similarity=0.203 Sum_probs=167.2
Q ss_pred EEEcCCCccccCc-cccccccceEEEccccccCCCCCCCCCC-cceEEEeecCCCcccccccccCCCCCcEEEccCcccc
Q 041843 401 LVYAGSGLTEAPA-DVRGWEMGRRLSLMKNSIGNLPTVPTCP-HLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIML 478 (800)
Q Consensus 401 ~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~ 478 (800)
+...++.+.++.. .+.++.++..+++.+|.+..+|.+.... +|+.|+|..|.+..+....++.++.||.||||.| .+
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~i 161 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LI 161 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hh
Confidence 3344444444322 2456677777788888887777765543 4777888887777777666777777888888877 66
Q ss_pred ccccc-cccccccccEEeccCCCCcccch-hhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCccc
Q 041843 479 RQLPT-GISKLVSLQLLDISYTSVTGLPE-GLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFS 556 (800)
Q Consensus 479 ~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~ 556 (800)
.++|. ++..=.++++|+|++|.|+.+-. .+..+.+|..|.|+.| .+..+|..+|.+|++|+.|++..|.+..
T Consensus 162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iri----- 235 (873)
T KOG4194|consen 162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRI----- 235 (873)
T ss_pred hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceee-----
Confidence 66654 34445677788888887777533 4667777777777755 3577777777778888888777776653
Q ss_pred ccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcce
Q 041843 557 SRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKG 636 (800)
Q Consensus 557 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 636 (800)
.....+.+|++|+.|.+..|.+..+...... .+..++.|.|..+.. ..+....+-+++.|+.|+++.|.+.+.
T Consensus 236 ----ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy--~l~kme~l~L~~N~l-~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 236 ----VEGLTFQGLPSLQNLKLQRNDISKLDDGAFY--GLEKMEHLNLETNRL-QAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred ----ehhhhhcCchhhhhhhhhhcCcccccCccee--eecccceeecccchh-hhhhcccccccchhhhhccchhhhhee
Confidence 2344566677777777777776665432211 123455555554432 122224566677788888877776554
Q ss_pred EEeccccccccCCCCcCCCCccEEeeecCCCCCCChh--hhcCCCCcEEEEecC
Q 041843 637 LKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTF--LVFAPNLKSISVRDC 688 (800)
Q Consensus 637 l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~~ 688 (800)
-+..|. ..++|+.|+|+++ .++.++. +..+..|++|.|+.+
T Consensus 309 h~d~Ws----------ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 309 HIDSWS----------FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred ecchhh----------hcccceeEecccc-ccccCChhHHHHHHHhhhhccccc
Confidence 444453 3467777777766 4555543 556667777777664
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=1.2e-21 Score=201.96 Aligned_cols=317 Identities=18% Similarity=0.257 Sum_probs=232.5
Q ss_pred cccCccccccccceEEEccccccCCCC-CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccc--cccccc
Q 041843 409 TEAPADVRGWEMGRRLSLMKNSIGNLP-TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLR--QLPTGI 485 (800)
Q Consensus 409 ~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~--~lp~~i 485 (800)
...|.+...++.++.|.+....+..+| .++.+.+|+.|.+..|++..+... ++.++.||.+.+..| .++ -+|..|
T Consensus 22 ~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N-~LKnsGiP~di 99 (1255)
T KOG0444|consen 22 DRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDN-NLKNSGIPTDI 99 (1255)
T ss_pred CcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhcc-ccccCCCCchh
Confidence 356677788899999999999999999 588999999999999999888877 789999999999998 554 489999
Q ss_pred cccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHH
Q 041843 486 SKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEE 565 (800)
Q Consensus 486 ~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 565 (800)
..|..|.+||||+|++++.|..+..-+++-.|+|++|+ +..||..++.+|+.|-.|++++|.+. ..|..
T Consensus 100 F~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe----------~LPPQ 168 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLE----------MLPPQ 168 (1255)
T ss_pred cccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhh----------hcCHH
Confidence 99999999999999999999999999999999999775 69999999999999999999999876 57888
Q ss_pred hhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEecccccc
Q 041843 566 LLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMV 645 (800)
Q Consensus 566 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~ 645 (800)
+..|.+|++|.+++|.+...+ +....-.++++.|.+++....-.--+.++..+.+|..++++.|.. ..+|....
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQ--LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~vPecly--- 242 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQ--LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIVPECLY--- 242 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHH--HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-CcchHHHh---
Confidence 999999999999999876543 122223346777777776554333346788889999999988763 33444433
Q ss_pred ccCCCCcCCCCccEEeeecCCCCCCChh-hhcCCCCcEEEEecCcchhHhhc-------------cCCCCCcCcccCccC
Q 041843 646 QKSRQPCVFRSLEEVTVDNCGNLKHLTF-LVFAPNLKSISVRDCDDMEEIIS-------------AGEFDDIPEMTGIIS 711 (800)
Q Consensus 646 ~l~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~~~~l~~i~~-------------~~~~~~~~~l~~~~~ 711 (800)
.+++|+.|+|+++ .++.+.. .+...+|+.|+++.+. +..++. ..+......+ ....
T Consensus 243 -------~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGi-PSGI 312 (1255)
T KOG0444|consen 243 -------KLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGI-PSGI 312 (1255)
T ss_pred -------hhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCC-ccch
Confidence 4688889998887 5566653 4566788888888753 332221 1111000000 0112
Q ss_pred CcCCcccEeeccCcccccccCCCCCCCCCcceEeecCCCCCCCCC
Q 041843 712 SPFAKLQHLQLGGLGRLKSIYWKPLPLPRLKELTVVDCDSLEKLP 756 (800)
Q Consensus 712 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~L~~L~ 756 (800)
+.+..|+.+...+ ++|+-.|.+.+.++.|+.|.+.. ..|-.||
T Consensus 313 GKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLP 355 (1255)
T KOG0444|consen 313 GKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLP 355 (1255)
T ss_pred hhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeech
Confidence 2333444444444 45666666667777777777643 4444444
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=1e-19 Score=186.86 Aligned_cols=337 Identities=18% Similarity=0.207 Sum_probs=176.4
Q ss_pred ceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc-cccccccccccEEecc
Q 041843 421 GRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQLLDIS 497 (800)
Q Consensus 421 l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~ 497 (800)
.+.|++++|.+.++. .|.++++|+.+.+..|.++.+|.. .....+|+.|+|.+| .+..+ .+.+.-++.|+.||||
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f-~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF-GHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc-cccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 345566666555444 245566666666666665555541 233344666666665 33332 3344555556666666
Q ss_pred CCCCcccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEE
Q 041843 498 YTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLE 576 (800)
Q Consensus 498 ~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 576 (800)
.|.|+.+|.. +..-.++++|+|++|. ++.+-.+.|.+|.+|-+|.++.|.+.. --+..+.+|++|+.|+
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNritt---------Lp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITT---------LPQRSFKRLPKLESLD 227 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccc---------cCHHHhhhcchhhhhh
Confidence 6665555432 3333456666666443 355554455556666666666665554 3344555566666666
Q ss_pred EEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCC
Q 041843 577 ITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRS 656 (800)
Q Consensus 577 l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 656 (800)
+..|.+...+... .+-..+++.|.+..+....- .-..|-.+.++++|+++.|.... +...|. ..+..
T Consensus 228 LnrN~irive~lt--FqgL~Sl~nlklqrN~I~kL-~DG~Fy~l~kme~l~L~~N~l~~-vn~g~l---------fgLt~ 294 (873)
T KOG4194|consen 228 LNRNRIRIVEGLT--FQGLPSLQNLKLQRNDISKL-DDGAFYGLEKMEHLNLETNRLQA-VNEGWL---------FGLTS 294 (873)
T ss_pred ccccceeeehhhh--hcCchhhhhhhhhhcCcccc-cCcceeeecccceeecccchhhh-hhcccc---------cccch
Confidence 6655554322111 01122444444444332111 11234445555555555554322 122221 24566
Q ss_pred ccEEeeecCCCCCC--ChhhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcccccccCCC
Q 041843 657 LEEVTVDNCGNLKH--LTFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLKSIYWK 734 (800)
Q Consensus 657 L~~L~l~~c~~l~~--l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 734 (800)
|+.|+++++. ... .......++|++|+|+++. ++++.. ..+..+..|+.|.+++ +.+..+...
T Consensus 295 L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~-i~~l~~------------~sf~~L~~Le~LnLs~-Nsi~~l~e~ 359 (873)
T KOG4194|consen 295 LEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNR-ITRLDE------------GSFRVLSQLEELNLSH-NSIDHLAEG 359 (873)
T ss_pred hhhhccchhh-hheeecchhhhcccceeEeccccc-cccCCh------------hHHHHHHHhhhhcccc-cchHHHHhh
Confidence 6666666652 222 2234556777777777643 333322 2333455566666654 233333221
Q ss_pred -CCCCCCcceEeecC----------------CCCCCCCCCCCCCCCCcceEEEeehhccccceecchhhhhhcccccccC
Q 041843 735 -PLPLPRLKELTVVD----------------CDSLEKLPLDSNSANGRRILIRGDEDWWRRLQWEDEATQNAFRLCFQSL 797 (800)
Q Consensus 735 -~~~~~~L~~L~l~~----------------c~~L~~L~~~~n~~~l~~~~i~~~~~~~~~l~~~~~~~~~~~~~~f~~~ 797 (800)
...+.+|++|++++ +++|++|.+.+|.+.......+...+-++.|+..+|++.++-+.-|.++
T Consensus 360 af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 22345666666552 6777777777776554444555556778889999999999888888776
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1.6e-20 Score=184.39 Aligned_cols=319 Identities=19% Similarity=0.244 Sum_probs=197.9
Q ss_pred EEcCCCccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc
Q 041843 402 VYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL 481 (800)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l 481 (800)
....+.++.+|+.+..+.++..|++..|++..+|.|.+|+.|..|.+..|.++.+|....+.+.+|.+||+..| .+++.
T Consensus 189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~ 267 (565)
T KOG0472|consen 189 DCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEV 267 (565)
T ss_pred ccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccC
Confidence 34455788899999999999999999999999999999999999999999999999988889999999999999 99999
Q ss_pred cccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCC--CCcEEEe--eecCCCCCCcc--
Q 041843 482 PTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFS--RLRVLRM--FATGVGSYGRF-- 555 (800)
Q Consensus 482 p~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~--~L~~L~l--~~~~~~~~~~~-- 555 (800)
|+.++.|.+|++||+|+|.|+.+|.++++| +|+.|-+.||. ++.+-..++.+=+ -|++|+= .....+...+-
T Consensus 268 Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred chHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 999999999999999999999999999999 99999999885 4544444332211 1222211 00011100000
Q ss_pred --cccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceeccccccc----------------------CCcc
Q 041843 556 --SSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFC----------------------REES 611 (800)
Q Consensus 556 --~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~----------------------~~~~ 611 (800)
...............+.+.|+++.-+++.++.......-..-....+++.+. ...+
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is 425 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS 425 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc
Confidence 0000011222223344455555444443332211111100111111221111 1122
Q ss_pred ccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCChhhhc-CCCCcEEEEecCcc
Q 041843 612 IGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTFLVF-APNLKSISVRDCDD 690 (800)
Q Consensus 612 ~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~l~~-l~~L~~L~l~~~~~ 690 (800)
+.+..++.+++|..|++++|. +.++|.+++ .+..|+.|+++.+ ....+|-... +..|+.+-.+ ...
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~----------~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas-~nq 492 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNL-LNDLPEEMG----------SLVRLQTLNLSFN-RFRMLPECLYELQTLETLLAS-NNQ 492 (565)
T ss_pred cchHHHHhhhcceeeecccch-hhhcchhhh----------hhhhhheeccccc-ccccchHHHhhHHHHHHHHhc-ccc
Confidence 222445666777777777654 334454444 3466777777765 4444443322 2223322222 223
Q ss_pred hhHhhccCCCCCcCcccCccCCcCCcccEeeccCcccccccCCCCCCCCCcceEeecCC
Q 041843 691 MEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLKSIYWKPLPLPRLKELTVVDC 749 (800)
Q Consensus 691 l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 749 (800)
+.++.. .....+.+|..|++.+ ..++.+|...+.+.+|++|.+.+-
T Consensus 493 i~~vd~------------~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 493 IGSVDP------------SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred ccccCh------------HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCC
Confidence 333322 2345677788888876 578888888777777777777763
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=2.4e-20 Score=183.19 Aligned_cols=215 Identities=22% Similarity=0.280 Sum_probs=171.6
Q ss_pred EEEEcCCCccccCccccccccceEEEccccccCCCC-CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccc
Q 041843 400 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP-TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIML 478 (800)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~ 478 (800)
.+..+++.+.++|+.+..+..+..++.++|++..+| .......|+.|+++.|.+..++++ ++.+..|..|+..+| .+
T Consensus 72 vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N-~i 149 (565)
T KOG0472|consen 72 VLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS-IGRLLDLEDLDATNN-QI 149 (565)
T ss_pred EEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch-HHHHhhhhhhhcccc-cc
Confidence 345667788889999999999999999999999988 478889999999999999999988 678889999999998 88
Q ss_pred ccccccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCccccc
Q 041843 479 RQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSR 558 (800)
Q Consensus 479 ~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~ 558 (800)
..+|..++++.+|..|++.+|.++.+|+..-+++.|++||...| .++.+|+. ++.|.+|..|++..|++.
T Consensus 150 ~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~-lg~l~~L~~LyL~~Nki~-------- 219 (565)
T KOG0472|consen 150 SSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPE-LGGLESLELLYLRRNKIR-------- 219 (565)
T ss_pred ccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChh-hcchhhhHHHHhhhcccc--------
Confidence 99999999999999999999999999888777999999999865 57999998 899999999999999885
Q ss_pred ccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCC
Q 041843 559 YVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDW 633 (800)
Q Consensus 559 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 633 (800)
+..+++++..|.+|+++.|.++.+++... +....+..|++.++...+ .+ ..+.-+.+|+.|++++|..
T Consensus 220 ---~lPef~gcs~L~Elh~g~N~i~~lpae~~--~~L~~l~vLDLRdNklke-~P-de~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 220 ---FLPEFPGCSLLKELHVGENQIEMLPAEHL--KHLNSLLVLDLRDNKLKE-VP-DEICLLRSLERLDLSNNDI 287 (565)
T ss_pred ---cCCCCCccHHHHHHHhcccHHHhhHHHHh--cccccceeeecccccccc-Cc-hHHHHhhhhhhhcccCCcc
Confidence 33378888889999999888877765322 122345555555543221 11 2344456677777766653
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.4e-18 Score=150.92 Aligned_cols=168 Identities=23% Similarity=0.372 Sum_probs=146.3
Q ss_pred ccccCccccccccceEEEccccccCCCC-CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccccccc
Q 041843 408 LTEAPADVRGWEMGRRLSLMKNSIGNLP-TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGIS 486 (800)
Q Consensus 408 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~ 486 (800)
+.++ +....++.+.+|.+++|.+..+| .+..+.+|++|.+++|+++.+|.+ ++++++|+.|++.-| .+..+|..|+
T Consensus 23 f~~~-~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfg 99 (264)
T KOG0617|consen 23 FEEL-PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFG 99 (264)
T ss_pred Hhhc-ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccC
Confidence 3444 55667788999999999998877 588999999999999999999988 899999999999988 8889999999
Q ss_pred ccccccEEeccCCCCcc--cchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHH
Q 041843 487 KLVSLQLLDISYTSVTG--LPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAE 564 (800)
Q Consensus 487 ~L~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 564 (800)
.++-|++|||.+|.+.+ +|..+..++.|+-|+++.|. ..-+|++ +++|++||.|.+..|... ..+.
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll----------~lpk 167 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL----------SLPK 167 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh----------hCcH
Confidence 99999999999998876 89999999999999999875 5888888 899999999999998776 5889
Q ss_pred HhhCCCCCcEEEEEeccchhHHHhhh
Q 041843 565 ELLGLKYLEVLEITFRSFEAYQTFLS 590 (800)
Q Consensus 565 ~l~~l~~L~~L~l~~~~~~~~~~~~~ 590 (800)
+++.+++|+.|+|.+|.++.++..+.
T Consensus 168 eig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred HHHHHHHHHHHhcccceeeecChhhh
Confidence 99999999999999998877665433
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=8.7e-15 Score=164.61 Aligned_cols=266 Identities=22% Similarity=0.190 Sum_probs=180.1
Q ss_pred HHHHHHhhhhcccccEEEEcCCCccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCC
Q 041843 385 MALWITCEIEKEKEGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSM 464 (800)
Q Consensus 385 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l 464 (800)
.|.....++..+....+.+...++..+|+.+. .+++.|++.+|.+..+|.. .++|++|++++|.++.+|.. .
T Consensus 190 ~a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p 261 (788)
T PRK15387 190 AVVQKMRACLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----P 261 (788)
T ss_pred HHHHHHHHHhcCCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----c
Confidence 33334444444456677888888999988765 4799999999999999864 58999999999999988752 4
Q ss_pred CCCcEEEccCccccccccccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEe
Q 041843 465 PCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRM 544 (800)
Q Consensus 465 ~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l 544 (800)
++|+.|++++| .+..+|.. ..+|+.|++++|+++.+|.. +++|+.|++++|+ +..+|.. ..+|+.|++
T Consensus 262 ~sL~~L~Ls~N-~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~L 329 (788)
T PRK15387 262 PGLLELSIFSN-PLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWA 329 (788)
T ss_pred cccceeeccCC-chhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----ccccccccc
Confidence 68999999999 77888863 36788999999999999863 4789999999874 5777752 246788888
Q ss_pred eecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCc
Q 041843 545 FATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLN 624 (800)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~ 624 (800)
.+|.+.. ++. + ..+|+.|++++|.+..++.. ...++.|.+.++... .++ . .+.+|+
T Consensus 330 s~N~L~~----------LP~-l--p~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~L~-~LP--~--l~~~L~ 385 (788)
T PRK15387 330 YNNQLTS----------LPT-L--PSGLQELSVSDNQLASLPTL------PSELYKLWAYNNRLT-SLP--A--LPSGLK 385 (788)
T ss_pred ccCcccc----------ccc-c--ccccceEecCCCccCCCCCC------Ccccceehhhccccc-cCc--c--cccccc
Confidence 8887753 221 1 24789999999988765432 235566666554321 222 1 124677
Q ss_pred eEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCChhhhcCCCCcEEEEecCcchhHhhccCCCCCcC
Q 041843 625 TLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTFLVFAPNLKSISVRDCDDMEEIISAGEFDDIP 704 (800)
Q Consensus 625 ~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 704 (800)
.|++++|.... +|. .+++|+.|+++++ .++.+|.+ ..+|+.|+++++. ++.++.
T Consensus 386 ~LdLs~N~Lt~-LP~-------------l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~Nq-Lt~LP~-------- 439 (788)
T PRK15387 386 ELIVSGNRLTS-LPV-------------LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRNQ-LTRLPE-------- 439 (788)
T ss_pred eEEecCCcccC-CCC-------------cccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccCc-ccccCh--------
Confidence 77777765332 221 1356777777776 45555532 3466777776654 333321
Q ss_pred cccCccCCcCCcccEeeccCc
Q 041843 705 EMTGIISSPFAKLQHLQLGGL 725 (800)
Q Consensus 705 ~l~~~~~~~~~~L~~L~l~~~ 725 (800)
....+++|+.|++.+.
T Consensus 440 -----sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 440 -----SLIHLSSETTVNLEGN 455 (788)
T ss_pred -----HHhhccCCCeEECCCC
Confidence 2334667777777664
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=8.6e-17 Score=174.64 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=59.8
Q ss_pred hHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEecc
Q 041843 562 VAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDY 641 (800)
Q Consensus 562 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~ 641 (800)
.+..+..+++|++|++..|.+..++..... .....+..|....+.. ...+...-..+..|+.|++.+|.......+-+
T Consensus 302 ip~~le~~~sL~tLdL~~N~L~~lp~~~l~-v~~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l 379 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQSNNLPSLPDNFLA-VLNASLNTLNVSSNKL-STLPSYEENNHAALQELYLANNHLTDSCFPVL 379 (1081)
T ss_pred CCCcccccceeeeeeehhccccccchHHHh-hhhHHHHHHhhhhccc-cccccccchhhHHHHHHHHhcCcccccchhhh
Confidence 444455566777777776666555441111 0001112221111110 01110111224556667777666554332222
Q ss_pred ccccccCCCCcCCCCccEEeeecCCCCCCChh--hhcCCCCcEEEEecCcchhHhh
Q 041843 642 KDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTF--LVFAPNLKSISVRDCDDMEEII 695 (800)
Q Consensus 642 ~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~~~~l~~i~ 695 (800)
..+.+|+.|+|+++ .+..+|. +..++.|++|+|+++. ++.++
T Consensus 380 ----------~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNk-L~~Lp 423 (1081)
T KOG0618|consen 380 ----------VNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNK-LTTLP 423 (1081)
T ss_pred ----------ccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccch-hhhhh
Confidence 24678888888776 4555553 5677788888888753 55443
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=1.1e-16 Score=139.28 Aligned_cols=155 Identities=29% Similarity=0.446 Sum_probs=138.9
Q ss_pred EEEcCCCccccCccccccccceEEEccccccCCCC-CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccc
Q 041843 401 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP-TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLR 479 (800)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~ 479 (800)
++.+.+.+..+|+.+..+.++..|++.+|+++++| .++.+++|+.|.+.-|.+..+|.+ |+.++.|++|||+.| ++.
T Consensus 38 LtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltyn-nl~ 115 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYN-NLN 115 (264)
T ss_pred hhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhcccc-ccc
Confidence 45667788999999999999999999999999999 589999999999999999888887 899999999999998 443
Q ss_pred --cccccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccc
Q 041843 480 --QLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSS 557 (800)
Q Consensus 480 --~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~ 557 (800)
.+|..|..+..|+-|.|+.|.+.-+|..+++|++||.|.++.|. +-++|.. ++.|+.|++|++.+|...
T Consensus 116 e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~------- 186 (264)
T KOG0617|consen 116 ENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLT------- 186 (264)
T ss_pred cccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceee-------
Confidence 58999999999999999999999999999999999999999875 6789998 899999999999999775
Q ss_pred cccchHHHhhCC
Q 041843 558 RYVNVAEELLGL 569 (800)
Q Consensus 558 ~~~~~~~~l~~l 569 (800)
..+.+++++
T Consensus 187 ---vlppel~~l 195 (264)
T KOG0617|consen 187 ---VLPPELANL 195 (264)
T ss_pred ---ecChhhhhh
Confidence 456666554
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.55 E-value=8.9e-13 Score=159.73 Aligned_cols=290 Identities=16% Similarity=0.218 Sum_probs=185.9
Q ss_pred CCCCCcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC-ccCHHHHHHHH
Q 041843 58 RPTEPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEKIQETI 136 (800)
Q Consensus 58 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i 136 (800)
|+.++.+|-|+.-.+.+. .....+++.|+|++|.||||++.++.+.. + .++|+++.. +.+...+...+
T Consensus 10 p~~~~~~~~R~rl~~~l~----~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLS----GANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCccccCcchHHHHHHh----cccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHH
Confidence 334567788876665553 33357899999999999999999998643 2 589999864 44666666666
Q ss_pred HHHhCCCCCC-----------CCCCCHHHHHHHHHHHhc--CCceEEEEccccch------hhhhhcCCcCCCCcEEEEE
Q 041843 137 GKKIGLYTDS-----------WKSKSLEEKAQDIFKTLS--KKKFALLLDDLWER------VDLKKIGVPLPKNSAVVFT 197 (800)
Q Consensus 137 ~~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~------~~~~~~~~~~~~~s~iivT 197 (800)
+..+...... ....+.......+...+. +.+++||+||+... ..+..+....+++.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 6666321110 011223334444444443 67899999998432 2344444445668899999
Q ss_pred eCCcccccc--c-CccceEEec----cCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHHhcC
Q 041843 198 TRFVDVCGG--M-EARRKFKVA----CLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAMAYK 270 (800)
Q Consensus 198 tR~~~~~~~--~-~~~~~~~l~----~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~ 270 (800)
||....... + .......++ +|+.+|+.++|....+... + .+.+.++.+.|+|+|+++..++..+...
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E---AAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C---HHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 997432211 1 112345555 9999999999987765432 1 5678899999999999999998877543
Q ss_pred CC-HHHHHHHHHHHHhhhhccCCC-hhHHHHHHhhh-ccCCChhhHHHHHhHhccCCCCcccchHHHHHHHHhcCCcccc
Q 041843 271 KT-PEEWRYAIEVLRRSASEFAGL-GKEVYSLLKFS-YDCLPNDAIRSCFLYCCLYPEDYSIDKRDLIDCWMCEGFLEED 347 (800)
Q Consensus 271 ~~-~~~w~~~l~~l~~~~~~~~~~-~~~i~~~l~~s-y~~L~~~~~k~c~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~ 347 (800)
.. ... ... .+.+. ...+...+.-. ++.||+ ..+.++...|+++ .++.+ +.. ...
T Consensus 233 ~~~~~~---~~~-------~~~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~-----~l~--- 289 (903)
T PRK04841 233 NSSLHD---SAR-------RLAGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIV-----RVT--- 289 (903)
T ss_pred CCchhh---hhH-------hhcCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHH-----HHc---
Confidence 21 111 011 11111 12455554443 789999 7999999999986 33432 221 111
Q ss_pred ccchhhhHHHHHHHHHHhccccc-c--cCCcEEEehHHHHHHHHHH
Q 041843 348 KFGTQNRGSHIVTTLVRACLLEE-V--EDDQVKMHDVVRDMALWIT 390 (800)
Q Consensus 348 ~~~~~~~~~~~~~~L~~~~ll~~-~--~~~~~~~h~l~~~~~~~i~ 390 (800)
..+.....++.|.+.+++.. . +..+|.+|++++++.+.-.
T Consensus 290 ---~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 290 ---GEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 12345678999999999653 2 2347999999999988654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=2.2e-14 Score=162.60 Aligned_cols=242 Identities=23% Similarity=0.217 Sum_probs=142.3
Q ss_pred ccEEEEcCCCccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccc
Q 041843 398 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM 477 (800)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~ 477 (800)
...+.+.+.++..+|..+. +.++.|++++|.+..+|... +++|++|++++|.++.+|..+ ..+|+.|+|++| .
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N-~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL---PDTIQEMELSIN-R 252 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh---hccccEEECcCC-c
Confidence 4455566667777766553 46778888888887777422 257888888888877776643 246788888887 6
Q ss_pred cccccccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccc
Q 041843 478 LRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSS 557 (800)
Q Consensus 478 ~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~ 557 (800)
+..+|..+. .+|++|++++|+++.+|..+. .+|+.|++++|+ +..+|.. + .++|+.|++++|.+..
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-l--p~sL~~L~Ls~N~Lt~------ 318 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-L--PSGITHLNVQSNSLTA------ 318 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-c--hhhHHHHHhcCCcccc------
Confidence 667776654 468888888888877776554 478888888764 5667654 2 2467777777776653
Q ss_pred cccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceE
Q 041843 558 RYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGL 637 (800)
Q Consensus 558 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l 637 (800)
.+..+ .++|+.|+++.|.+..++.. +.+.++.|.+.++... .++ ..+ .++|+.|++++|... .+
T Consensus 319 ----LP~~l--~~sL~~L~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N~L~-~LP-~~l--p~~L~~LdLs~N~Lt-~L 382 (754)
T PRK15370 319 ----LPETL--PPGLKTLEAGENALTSLPAS-----LPPELQVLDVSKNQIT-VLP-ETL--PPTITTLDVSRNALT-NL 382 (754)
T ss_pred ----CCccc--cccceeccccCCccccCChh-----hcCcccEEECCCCCCC-cCC-hhh--cCCcCEEECCCCcCC-CC
Confidence 12112 24677777777766554321 1235556666555321 111 111 245666666665432 22
Q ss_pred EeccccccccCCCCcCCCCccEEeeecCCCCCCChh-----hhcCCCCcEEEEecCc
Q 041843 638 KIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTF-----LVFAPNLKSISVRDCD 689 (800)
Q Consensus 638 ~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-----l~~l~~L~~L~l~~~~ 689 (800)
|..+ ..+|+.|++++| ++..+|. ...++++..|++.+++
T Consensus 383 P~~l------------~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 383 PENL------------PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CHhH------------HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 2211 134555666555 3444331 2234556666666554
No 19
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.48 E-value=5.2e-12 Score=137.72 Aligned_cols=292 Identities=18% Similarity=0.197 Sum_probs=199.2
Q ss_pred CCCCCcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc-cCHHHHHHHH
Q 041843 58 RPTEPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETI 136 (800)
Q Consensus 58 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 136 (800)
|+.+...|-|.. +.+.|....+.+.+.|..|+|.||||++.+++... ..-..+.|.++... .+...+..-+
T Consensus 15 P~~~~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 15 PVRPDNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred CCCcccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHH
Confidence 333556677754 55556665578999999999999999999998843 55678999998754 4677777777
Q ss_pred HHHhCCCCC-----------CCCCCCHHHHHHHHHHHhcC--CceEEEEccc---cch---hhhhhcCCcCCCCcEEEEE
Q 041843 137 GKKIGLYTD-----------SWKSKSLEEKAQDIFKTLSK--KKFALLLDDL---WER---VDLKKIGVPLPKNSAVVFT 197 (800)
Q Consensus 137 ~~~l~~~~~-----------~~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv---~~~---~~~~~~~~~~~~~s~iivT 197 (800)
+..++...+ .....+.......+...+.. ++.++||||. .+. ..++.+....|++-.+|||
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 777763221 12344555566666666654 6899999996 222 3466666777889999999
Q ss_pred eCCccccccc---CccceEEec----cCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHHhcC
Q 041843 198 TRFVDVCGGM---EARRKFKVA----CLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAMAYK 270 (800)
Q Consensus 198 tR~~~~~~~~---~~~~~~~l~----~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~ 270 (800)
||.......- -.+...+++ .|+.+|+.++|....+..- .+...+.+.+..+|.+-|+..++=.++..
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 9976543211 112233333 4899999999988754322 26678999999999999999999888744
Q ss_pred CCHHHHHHHHHHHHhhhhccCCChhHHHHHHh-hhccCCChhhHHHHHhHhccCCCCcccchHHHHHHHHhcCCcccccc
Q 041843 271 KTPEEWRYAIEVLRRSASEFAGLGKEVYSLLK-FSYDCLPNDAIRSCFLYCCLYPEDYSIDKRDLIDCWMCEGFLEEDKF 349 (800)
Q Consensus 271 ~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~-~sy~~L~~~~~k~c~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~ 349 (800)
.+.+.-... +.+..+-+.+.|. --++.||+ ++|.+++-+|+++. |. .+|+.. .
T Consensus 241 ~~~~q~~~~----------LsG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~---f~-~eL~~~-----------L 294 (894)
T COG2909 241 TSAEQSLRG----------LSGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSR---FN-DELCNA-----------L 294 (894)
T ss_pred CcHHHHhhh----------ccchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHH---hh-HHHHHH-----------H
Confidence 443332221 2222223333332 23688999 79999999999854 11 122221 1
Q ss_pred chhhhHHHHHHHHHHhcccccc---cCCcEEEehHHHHHHHHH
Q 041843 350 GTQNRGSHIVTTLVRACLLEEV---EDDQVKMHDVVRDMALWI 389 (800)
Q Consensus 350 ~~~~~~~~~~~~L~~~~ll~~~---~~~~~~~h~l~~~~~~~i 389 (800)
..++.+..++++|.+++++-.. ...+|+.|.++.+|.+.-
T Consensus 295 tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 295 TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhh
Confidence 2345677889999999997543 678999999999998754
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=5e-13 Score=150.55 Aligned_cols=253 Identities=21% Similarity=0.165 Sum_probs=172.3
Q ss_pred cceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccCC
Q 041843 420 MGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYT 499 (800)
Q Consensus 420 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~ 499 (800)
.-..|+++.+.+..+|... .++|+.|++.+|.++.+|. .+++|++|++++| .+..+|.. .++|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCC-ccCcccCc---ccccceeeccCC
Confidence 3457899999999888622 2589999999999998875 3588999999999 78888853 468899999999
Q ss_pred CCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEe
Q 041843 500 SVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITF 579 (800)
Q Consensus 500 ~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 579 (800)
.++.+|... .+|+.|++++|. +..+|. .+++|+.|++++|.+... +. -..+|+.|.++.
T Consensus 273 ~L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~----~p~~L~~LdLS~N~L~~L----------p~---lp~~L~~L~Ls~ 331 (788)
T PRK15387 273 PLTHLPALP---SGLCKLWIFGNQ-LTSLPV----LPPGLQELSVSDNQLASL----------PA---LPSELCKLWAYN 331 (788)
T ss_pred chhhhhhch---hhcCEEECcCCc-cccccc----cccccceeECCCCccccC----------CC---Cccccccccccc
Confidence 999888643 578889999875 677875 257899999999977642 11 124577788888
Q ss_pred ccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccE
Q 041843 580 RSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEE 659 (800)
Q Consensus 580 ~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~ 659 (800)
|.+..++. +...|+.|+++++... .++. ..++|+.|++++|... .+|. .+.+|+.
T Consensus 332 N~L~~LP~------lp~~Lq~LdLS~N~Ls-~LP~----lp~~L~~L~Ls~N~L~-~LP~-------------l~~~L~~ 386 (788)
T PRK15387 332 NQLTSLPT------LPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLT-SLPA-------------LPSGLKE 386 (788)
T ss_pred Cccccccc------cccccceEecCCCccC-CCCC----CCcccceehhhccccc-cCcc-------------cccccce
Confidence 88776543 2246777887765432 2221 1356777777776533 2221 1357888
Q ss_pred EeeecCCCCCCChhhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcccccccCCCCCCCC
Q 041843 660 VTVDNCGNLKHLTFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLKSIYWKPLPLP 739 (800)
Q Consensus 660 L~l~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 739 (800)
|+++++ .++.+|.. .++|+.|+++++. +..+ +..+.+|+.|++.+ ..+..+|.....++
T Consensus 387 LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssI----------------P~l~~~L~~L~Ls~-NqLt~LP~sl~~L~ 445 (788)
T PRK15387 387 LIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSL----------------PMLPSGLLSLSVYR-NQLTRLPESLIHLS 445 (788)
T ss_pred EEecCC-cccCCCCc--ccCCCEEEccCCc-CCCC----------------Ccchhhhhhhhhcc-CcccccChHHhhcc
Confidence 888876 45555542 4678888888865 3322 12234677777776 45666665555556
Q ss_pred CcceEeecC
Q 041843 740 RLKELTVVD 748 (800)
Q Consensus 740 ~L~~L~l~~ 748 (800)
+|+.|++++
T Consensus 446 ~L~~LdLs~ 454 (788)
T PRK15387 446 SETTVNLEG 454 (788)
T ss_pred CCCeEECCC
Confidence 666666555
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=2.2e-13 Score=154.58 Aligned_cols=221 Identities=20% Similarity=0.261 Sum_probs=148.5
Q ss_pred cceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccCC
Q 041843 420 MGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYT 499 (800)
Q Consensus 420 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~ 499 (800)
+...|.+.++++..+|... .++|+.|++++|.++.+|..++ .+|++|++++| .+..+|..+. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence 4567889999998888521 2689999999999999987643 58999999999 7888987664 47999999999
Q ss_pred CCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEe
Q 041843 500 SVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITF 579 (800)
Q Consensus 500 ~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 579 (800)
.+..+|..+. .+|+.|++++| .+..+|.. + ..+|+.|++++|.+.. .+..+. ++|+.|+++.
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l--~~sL~~L~Ls~N~Lt~----------LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHN-KISCLPEN-L--PEELRYLSVYDNSIRT----------LPAHLP--SGITHLNVQS 313 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCC-ccCccccc-c--CCCCcEEECCCCcccc----------Ccccch--hhHHHHHhcC
Confidence 9999998775 58999999965 56788875 3 2589999999997763 222221 3677788888
Q ss_pred ccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccE
Q 041843 580 RSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEE 659 (800)
Q Consensus 580 ~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~ 659 (800)
|.+..++.. +...++.|.+.++... .++ ..+ .++|+.|++++|... .+|.. .+++|+.
T Consensus 314 N~Lt~LP~~-----l~~sL~~L~Ls~N~Lt-~LP-~~l--~~sL~~L~Ls~N~L~-~LP~~------------lp~~L~~ 371 (754)
T PRK15370 314 NSLTALPET-----LPPGLKTLEAGENALT-SLP-ASL--PPELQVLDVSKNQIT-VLPET------------LPPTITT 371 (754)
T ss_pred CccccCCcc-----ccccceeccccCCccc-cCC-hhh--cCcccEEECCCCCCC-cCChh------------hcCCcCE
Confidence 877654321 1235666666665421 122 112 256777777766532 22211 1246777
Q ss_pred EeeecCCCCCCChhhhcCCCCcEEEEecCc
Q 041843 660 VTVDNCGNLKHLTFLVFAPNLKSISVRDCD 689 (800)
Q Consensus 660 L~l~~c~~l~~l~~l~~l~~L~~L~l~~~~ 689 (800)
|++++| .++.+|.- ..++|+.|++++|.
T Consensus 372 LdLs~N-~Lt~LP~~-l~~sL~~LdLs~N~ 399 (754)
T PRK15370 372 LDVSRN-ALTNLPEN-LPAALQIMQASRNN 399 (754)
T ss_pred EECCCC-cCCCCCHh-HHHHHHHHhhccCC
Confidence 777766 44444421 12356666666643
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.43 E-value=1e-14 Score=158.79 Aligned_cols=228 Identities=21% Similarity=0.306 Sum_probs=151.3
Q ss_pred cceEEEccccccCCCC-CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccC
Q 041843 420 MGRRLSLMKNSIGNLP-TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISY 498 (800)
Q Consensus 420 ~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~ 498 (800)
++.+|++++|.+..+| .+..+.+|+.|.++.|.+..+|.+ ..++++|++|.|.+| .+..+|.++..+++|++||+++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccch
Confidence 4778888888888887 477788888888888888777754 677888888888888 7788888888888888888888
Q ss_pred CCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEE
Q 041843 499 TSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEIT 578 (800)
Q Consensus 499 ~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 578 (800)
|.+..+|.-+..+..+..+..++|..+..++. .. ++.+++..+.+.. .++.++..+++ .|++.
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~n~l~~---------~~~~~i~~l~~--~ldLr 186 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRLNVLGG---------SFLIDIYNLTH--QLDLR 186 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhhhhccc---------chhcchhhhhe--eeecc
Confidence 88888888888888888888887733333332 22 6777777666554 56667777766 78888
Q ss_pred eccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCcc
Q 041843 579 FRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLE 658 (800)
Q Consensus 579 ~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~ 658 (800)
.|.+..... . ....++.+....+... .+. -.-++|+.|+.+.|.... +... ....+|+
T Consensus 187 ~N~~~~~dl--s---~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~-~~~~-----------p~p~nl~ 244 (1081)
T KOG0618|consen 187 YNEMEVLDL--S---NLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTT-LDVH-----------PVPLNLQ 244 (1081)
T ss_pred cchhhhhhh--h---hccchhhhhhhhcccc-eEE----ecCcchheeeeccCccee-eccc-----------cccccce
Confidence 887762211 1 1112222222221110 000 113677777777777552 1111 1356888
Q ss_pred EEeeecCCCCCCC-hhhhcCCCCcEEEEecCc
Q 041843 659 EVTVDNCGNLKHL-TFLVFAPNLKSISVRDCD 689 (800)
Q Consensus 659 ~L~l~~c~~l~~l-~~l~~l~~L~~L~l~~~~ 689 (800)
.++++.. ++..+ .|+..+++|+.|.+.++.
T Consensus 245 ~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 245 YLDISHN-NLSNLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred eeecchh-hhhcchHHHHhcccceEecccchh
Confidence 8888765 44444 467788888888877644
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.41 E-value=6.2e-11 Score=128.62 Aligned_cols=294 Identities=15% Similarity=0.095 Sum_probs=172.0
Q ss_pred CCCcccchhHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHH
Q 041843 60 TEPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 136 (800)
Q Consensus 60 ~~~~~vgr~~~~~~l~~~l~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 136 (800)
.+..++||+++++++...+.. +.....+.|+|++|+|||++++.++++.. .......++++++....+...++..+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 346799999999999998844 33456789999999999999999999872 22223456777777777888899999
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhc--CCceEEEEccccchh------hhhhcCCcCC--CC--cEEEEEeCCcccc
Q 041843 137 GKKIGLYTDSWKSKSLEEKAQDIFKTLS--KKKFALLLDDLWERV------DLKKIGVPLP--KN--SAVVFTTRFVDVC 204 (800)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~~~~~~~~~~--~~--s~iivTtR~~~~~ 204 (800)
..++..........+.++....+.+.+. +++.+||||+++... .+..+..... .+ ..+|.++......
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 9988652211223456677777777775 456899999997532 2333322111 12 3356666654432
Q ss_pred cccC-------ccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHh----CCChhHHHHHHHHH--h--c
Q 041843 205 GGME-------ARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKEC----GGLPLALIIIGRAM--A--Y 269 (800)
Q Consensus 205 ~~~~-------~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~----~g~Plai~~~~~~l--~--~ 269 (800)
.... ....+.+++++.++..+++..++.... ....-.++..+.+++.+ |..+.|+.++-.+. . .
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 2211 124679999999999999998763211 00011134445554444 45667776654332 1 1
Q ss_pred C---CCHHHHHHHHHHHHhhhhccCCChhHHHHHHhhhccCCChhhHHHHHhHhccC-C-CCcccchHHHHHH--HHhcC
Q 041843 270 K---KTPEEWRYAIEVLRRSASEFAGLGKEVYSLLKFSYDCLPNDAIRSCFLYCCLY-P-EDYSIDKRDLIDC--WMCEG 342 (800)
Q Consensus 270 ~---~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~l~~~~f-p-~~~~i~~~~li~~--w~a~g 342 (800)
. -+.+....+.+... .....-.+..||. +.|..+..++.. . ....+....+... .+++.
T Consensus 266 ~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 24455554444321 1223345778888 444443333322 1 1123444444422 23221
Q ss_pred CccccccchhhhHHHHHHHHHHhcccccc
Q 041843 343 FLEEDKFGTQNRGSHIVTTLVRACLLEEV 371 (800)
Q Consensus 343 ~i~~~~~~~~~~~~~~~~~L~~~~ll~~~ 371 (800)
+-.. ........+++..|.+.+++...
T Consensus 332 ~~~~--~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGYE--PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCCC--cCcHHHHHHHHHHHHhcCCeEEE
Confidence 1000 01224567789999999998754
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.38 E-value=2.3e-13 Score=134.49 Aligned_cols=251 Identities=20% Similarity=0.221 Sum_probs=189.3
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
..+...+.+++++|..+. .....+.+..|+|..+| .|..+++||.|+|+.|.++.|.+..|++++.|-.|-+.+++
T Consensus 49 ~~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred ceEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 455677788999988776 46678899999999999 49999999999999999999999999999998888887755
Q ss_pred cccccccc-ccccccccEEeccCCCCcccch-hhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCC-
Q 041843 477 MLRQLPTG-ISKLVSLQLLDISYTSVTGLPE-GLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYG- 553 (800)
Q Consensus 477 ~~~~lp~~-i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~- 553 (800)
.|+.+|.. |++|..|+.|.+..|++..++. .+..|++|..|.+..|. +..++.+.+..+.+++++++..|....+.
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccc
Confidence 89999864 7889999999999998888654 57889999999988774 57788877888888888887665411110
Q ss_pred --------------------------------------------ccc--------ccccchHHHhhCCCCCcEEEEEecc
Q 041843 554 --------------------------------------------RFS--------SRYVNVAEELLGLKYLEVLEITFRS 581 (800)
Q Consensus 554 --------------------------------------------~~~--------~~~~~~~~~l~~l~~L~~L~l~~~~ 581 (800)
.+. .+...-...+.+|++|++|++++|.
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 000 0111234458899999999999999
Q ss_pred chhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEe
Q 041843 582 FEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVT 661 (800)
Q Consensus 582 ~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~ 661 (800)
++.+..-.. .-...++.|.|..+... .+....|..+..|+.|++.+|.+..--|..|. .+.+|.+|.
T Consensus 286 i~~i~~~aF--e~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~----------~~~~l~~l~ 352 (498)
T KOG4237|consen 286 ITRIEDGAF--EGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ----------TLFSLSTLN 352 (498)
T ss_pred cchhhhhhh--cchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEeccccc----------ccceeeeee
Confidence 988764322 12246788888776542 23335688899999999999987664444443 357788888
Q ss_pred eecC
Q 041843 662 VDNC 665 (800)
Q Consensus 662 l~~c 665 (800)
+-.+
T Consensus 353 l~~N 356 (498)
T KOG4237|consen 353 LLSN 356 (498)
T ss_pred hccC
Confidence 7543
No 25
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.33 E-value=5.9e-11 Score=123.80 Aligned_cols=279 Identities=15% Similarity=0.146 Sum_probs=156.3
Q ss_pred CcccchhHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
.+|||+++.++++..++.. ......+.|+|++|+|||+||+.+++.. ...+ ..+..........+. ..+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l~-~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDLA-AIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhHH-HHH
Confidence 4699999999999888863 2345678999999999999999999987 2222 122221111122222 222
Q ss_pred HHhCCCC----CCCCCCCHHHHHHHHHHHhcCCceEEEEccccchhhhhhcCCcCCCCcEEEEEeCCccccccc--Cccc
Q 041843 138 KKIGLYT----DSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGGM--EARR 211 (800)
Q Consensus 138 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~s~iivTtR~~~~~~~~--~~~~ 211 (800)
..++... ++..... ......+...+.+.+..+|+|+..+...+.. +.++..-|..||+...+...+ ....
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~li~~t~~~~~l~~~l~sR~~~ 152 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLPPFTLVGATTRAGMLTSPLRDRFGI 152 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCCCeEEEEecCCccccCHHHHhhcce
Confidence 2222110 1001111 1223445666666777777777655443332 233455666677754432221 1134
Q ss_pred eEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhccC
Q 041843 212 KFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAMAYKKTPEEWRYAIEVLRRSASEFA 291 (800)
Q Consensus 212 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~ 291 (800)
.+.+++++.+|..+++.+.+.......+ .+....|++.|+|.|..+..++..+. .... ........ .
T Consensus 153 ~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a~-~~~~~~it-~ 219 (305)
T TIGR00635 153 ILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRVR--------DFAQ-VRGQKIIN-R 219 (305)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHHH--------HHHH-HcCCCCcC-H
Confidence 6799999999999999988865443333 67789999999999976655554321 1000 00000000 0
Q ss_pred CChhHHHHHHhhhccCCChhhHHHHHh-HhccCCCCcccchHHHHHHHHhcCCccccccchhhhHHHHHH-HHHHhcccc
Q 041843 292 GLGKEVYSLLKFSYDCLPNDAIRSCFL-YCCLYPEDYSIDKRDLIDCWMCEGFLEEDKFGTQNRGSHIVT-TLVRACLLE 369 (800)
Q Consensus 292 ~~~~~i~~~l~~sy~~L~~~~~k~c~l-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~-~L~~~~ll~ 369 (800)
..-......+...|..+++ +.+..+. ..+.+..+ .+....+.... ......+...++ .|++++|++
T Consensus 220 ~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l----------g~~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL----------GEDADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh----------CCCcchHHHhhhHHHHHcCCcc
Confidence 0001222335667888888 5565555 44555433 44444333221 123345666677 699999998
Q ss_pred cccCCcE
Q 041843 370 EVEDDQV 376 (800)
Q Consensus 370 ~~~~~~~ 376 (800)
....+++
T Consensus 288 ~~~~g~~ 294 (305)
T TIGR00635 288 RTPRGRI 294 (305)
T ss_pred cCCchhh
Confidence 6644443
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.32 E-value=7.5e-10 Score=118.92 Aligned_cols=294 Identities=16% Similarity=0.154 Sum_probs=169.0
Q ss_pred CCcccchhHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC---CEEEEEEEcCccCHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF---DYVIWVVVSKDLQLEKIQE 134 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~ 134 (800)
+..++||++++++|...+.. +...+.+.|+|++|+|||++++++++...+..... -.++|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 35799999999999999864 33557899999999999999999998762111111 3567888877777888999
Q ss_pred HHHHHhC---CCCCCCCCCCHHHHHHHHHHHhc--CCceEEEEccccchh-----hhhhcCCc-----CC-CCcEEEEEe
Q 041843 135 TIGKKIG---LYTDSWKSKSLEEKAQDIFKTLS--KKKFALLLDDLWERV-----DLKKIGVP-----LP-KNSAVVFTT 198 (800)
Q Consensus 135 ~i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~-----~~~~~~~~-----~~-~~s~iivTt 198 (800)
.++.++. ...+ ....+..+....+.+.+. +++++||||+++... .+..+... .+ ....+|+++
T Consensus 94 ~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 94 ELANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 9999883 2111 122344555666666663 567899999997541 12222111 11 133455555
Q ss_pred CCcccccccC-------ccceEEeccCChHHHHHHHHHHhCcc--cccCCCChHHHHHHHHHHhCCChhHHHHHH-HHH-
Q 041843 199 RFVDVCGGME-------ARRKFKVACLSDEDAWELFREKVGEE--TIESHHSIPQLAQTVAKECGGLPLALIIIG-RAM- 267 (800)
Q Consensus 199 R~~~~~~~~~-------~~~~~~l~~L~~~e~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~Plai~~~~-~~l- 267 (800)
........+. ....+.+++++.+|..+++..++... ....+++..+...+++....|.|..+..+. .+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5433211111 12468999999999999999887421 101222333455566777778885433222 211
Q ss_pred -h--c---CCCHHHHHHHHHHHHhhhhccCCChhHHHHHHhhhccCCChhhHHHHHhHhccC--CCCcccchHHHHHHH-
Q 041843 268 -A--Y---KKTPEEWRYAIEVLRRSASEFAGLGKEVYSLLKFSYDCLPNDAIRSCFLYCCLY--PEDYSIDKRDLIDCW- 338 (800)
Q Consensus 268 -~--~---~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~l~~~~f--p~~~~i~~~~li~~w- 338 (800)
. . .-+.+..+.+.+... .....-.+..|+. +.+..+..++.. ..+..+...++...+
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 1 1 123444444333321 1222345668887 555444433311 133445555555432
Q ss_pred -HhcCCccccccchhhhHHHHHHHHHHhcccccc
Q 041843 339 -MCEGFLEEDKFGTQNRGSHIVTTLVRACLLEEV 371 (800)
Q Consensus 339 -~a~g~i~~~~~~~~~~~~~~~~~L~~~~ll~~~ 371 (800)
+++.+ .. .........+++..|...|++...
T Consensus 319 ~~~~~~-~~-~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCEDI-GV-DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHhc-CC-CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 12211 10 112345667788888888888754
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.32 E-value=2.7e-11 Score=126.98 Aligned_cols=279 Identities=13% Similarity=0.094 Sum_probs=156.2
Q ss_pred CCcccchhHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 136 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 136 (800)
-.+|+|+++.++++..++.. +...+.+.|+|++|+|||++|+.+++.. ...+ .++.... ......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~~-~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGPA-LEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEeccc-ccChHHHHHH
Confidence 46799999999999877753 3346789999999999999999999987 2221 1222211 1111122233
Q ss_pred HHHhCCCC----CCCCCCCHHHHHHHHHHHhcCCceEEEEccccchhhhhhcCCcCCCCcEEEEEeCCcccccccC--cc
Q 041843 137 GKKIGLYT----DSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGGME--AR 210 (800)
Q Consensus 137 ~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~s~iivTtR~~~~~~~~~--~~ 210 (800)
...+.... ++..... ......++..+.+.+..+|+|+..+...+.. .+++.+-|..|++...+...+. ..
T Consensus 97 l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~~~~li~at~~~~~l~~~L~sRf~ 172 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLPPFTLIGATTRAGLLTSPLRDRFG 172 (328)
T ss_pred HHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceee---cCCCceEEeecCCcccCCHHHHHhcC
Confidence 33322100 0000000 1122334555566666666766544332221 2233455666776443322211 12
Q ss_pred ceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhcc
Q 041843 211 RKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAMAYKKTPEEWRYAIEVLRRSASEF 290 (800)
Q Consensus 211 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~ 290 (800)
..+.+++++.++..+++.+.+.......+ ++.+..|++.|+|.|..+..+...+. .|.... ......
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I~- 239 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVIT- 239 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCCC-
Confidence 46899999999999999988876554333 67899999999999965555544321 121100 000000
Q ss_pred CCChhHHHHHHhhhccCCChhhHHHHHh-HhccCCCCcccchHHHHHHHHhcCCccccccchhhhHHHHHH-HHHHhccc
Q 041843 291 AGLGKEVYSLLKFSYDCLPNDAIRSCFL-YCCLYPEDYSIDKRDLIDCWMCEGFLEEDKFGTQNRGSHIVT-TLVRACLL 368 (800)
Q Consensus 291 ~~~~~~i~~~l~~sy~~L~~~~~k~c~l-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~-~L~~~~ll 368 (800)
...-......+...+..|++ ..+..+. ....|+.+ .+..+.+.... ....+.+++.++ .|++.+|+
T Consensus 240 ~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l----------g~~~~~~~~~~e~~Li~~~li 307 (328)
T PRK00080 240 KEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL----------GEERDTIEDVYEPYLIQQGFI 307 (328)
T ss_pred HHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH----------CCCcchHHHHhhHHHHHcCCc
Confidence 00002334455677888888 5566554 55666655 45555443221 122345555666 89999999
Q ss_pred ccccCCc
Q 041843 369 EEVEDDQ 375 (800)
Q Consensus 369 ~~~~~~~ 375 (800)
+....++
T Consensus 308 ~~~~~gr 314 (328)
T PRK00080 308 QRTPRGR 314 (328)
T ss_pred ccCCchH
Confidence 7664443
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.31 E-value=1.1e-11 Score=124.32 Aligned_cols=193 Identities=21% Similarity=0.216 Sum_probs=104.0
Q ss_pred ccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHH--------
Q 041843 64 VVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET-------- 135 (800)
Q Consensus 64 ~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~-------- 135 (800)
||||++++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.. ......++|+..............
T Consensus 1 F~gR~~el~~l~~~l~~~-~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG-PSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh-cCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhhhHHHHHHHHHHHHH
Confidence 799999999999988775 56899999999999999999999987 222224445544333322221111
Q ss_pred -----HHHHhCCCCC----CCCCCCHHHHHHHHHHHhc--CCceEEEEccccchh-h----------hhhcCCcC--CCC
Q 041843 136 -----IGKKIGLYTD----SWKSKSLEEKAQDIFKTLS--KKKFALLLDDLWERV-D----------LKKIGVPL--PKN 191 (800)
Q Consensus 136 -----i~~~l~~~~~----~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~-~----------~~~~~~~~--~~~ 191 (800)
+...+....- .............+.+.+. +++++||+||++... . +..+.... ...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 2111111000 0011222333444444443 345999999986544 1 11111111 124
Q ss_pred cEEEEEeCCccccc--------ccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHH
Q 041843 192 SAVVFTTRFVDVCG--------GMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALII 262 (800)
Q Consensus 192 s~iivTtR~~~~~~--------~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 262 (800)
..+|++........ ..+....+.+++|+.+++++++...+... ... +..++..++|++.+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 44555554333321 12334459999999999999999876443 222 22367789999999999998864
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.31 E-value=1.2e-12 Score=151.03 Aligned_cols=327 Identities=21% Similarity=0.282 Sum_probs=184.5
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccc--cCCCCC--CCCCCcceEEEeecCC-CcccccccccCCCCCcEEEcc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNS--IGNLPT--VPTCPHLLTLFLNDNP-LRTITGGFFQSMPCLTVLKMS 473 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~Ls 473 (800)
+.+...+..+..++... ..++++.|-+..|. +..++. |..++.|++|+|++|. +.++|.. ++.+-+||||+++
T Consensus 526 rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLS 603 (889)
T ss_pred eEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-Hhhhhhhhccccc
Confidence 34444444555553333 33478999999886 677775 8889999999999876 6667665 8999999999999
Q ss_pred CccccccccccccccccccEEeccCCC-CcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCC
Q 041843 474 DNIMLRQLPTGISKLVSLQLLDISYTS-VTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSY 552 (800)
Q Consensus 474 ~~~~~~~lp~~i~~L~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~ 552 (800)
++ .+..+|..+.+|..|.+||+..+. +..+|.....|.+|++|.+.... .......++.+.+|++|....+.....
T Consensus 604 ~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 604 DT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred CC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchh
Confidence 99 899999999999999999999984 45566666779999999997543 111111234444444444433322221
Q ss_pred CcccccccchHHHhhCCCCCcEEEEEec-cchhHHHhhhcccccccceecccccccCCcccc----ccCcC-CcccCceE
Q 041843 553 GRFSSRYVNVAEELLGLKYLEVLEITFR-SFEAYQTFLSSQKLRSCTQALFLHEFCREESIG----VADLA-DLEQLNTL 626 (800)
Q Consensus 553 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~----~~~l~-~l~~L~~L 626 (800)
.....+..+++|..+..... .................++.|.+..+...+... ..... .++++..+
T Consensus 681 --------~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 681 --------LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred --------HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 11222222233321111100 000111111222233466666666665432111 00111 14456666
Q ss_pred EeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCCh-hhhcCCCCcEEEEecCcchhHhhccCCCCCcCc
Q 041843 627 YFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLT-FLVFAPNLKSISVRDCDDMEEIISAGEFDDIPE 705 (800)
Q Consensus 627 ~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 705 (800)
.+.+|...+. ..|. ...++|+.|.+..|+.++++. ....+..++.+.+..+ .+.......+...++.
T Consensus 753 ~~~~~~~~r~--l~~~---------~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~~~~~l~~l~~ 820 (889)
T KOG4658|consen 753 SILNCHMLRD--LTWL---------LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLRMLCSLGGLPQ 820 (889)
T ss_pred Hhhccccccc--cchh---------hccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccceeeecCCCCce
Confidence 6666665553 2222 246899999999998777653 3444444444333221 1111100000001111
Q ss_pred ccCccCCcCCcccEeeccCcccccccCCCCCCCCCcceEeecCC-CCCCCCCCC
Q 041843 706 MTGIISSPFAKLQHLQLGGLGRLKSIYWKPLPLPRLKELTVVDC-DSLEKLPLD 758 (800)
Q Consensus 706 l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c-~~L~~L~~~ 758 (800)
+. ..+-.+++|+.+.+..||++ ..+|.+..+.+.+| +++..+|-.
T Consensus 821 i~-~~~l~~~~l~~~~ve~~p~l-------~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 821 LY-WLPLSFLKLEELIVEECPKL-------GKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred eE-ecccCccchhheehhcCccc-------ccCccccccceeccccceeecCCc
Confidence 10 12233445666666666555 44678888888887 888888754
No 30
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.25 E-value=1.3e-09 Score=111.71 Aligned_cols=177 Identities=14% Similarity=0.158 Sum_probs=111.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT 162 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 162 (800)
..++++|+|++|+||||+++.+++... . .. ..++|+ +....+..+++..++..++.... ..........+.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~-~-~~-~~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD-Q-ER-VVAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELEDF 114 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC-C-CC-eEEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHH
Confidence 356899999999999999999998872 1 11 122333 33345677888899988876432 22223333333332
Q ss_pred -----hcCCceEEEEccccch--hhhhhcC---CcCC-C--CcEEEEEeCCccccccc----------CccceEEeccCC
Q 041843 163 -----LSKKKFALLLDDLWER--VDLKKIG---VPLP-K--NSAVVFTTRFVDVCGGM----------EARRKFKVACLS 219 (800)
Q Consensus 163 -----l~~~~~LlvlDdv~~~--~~~~~~~---~~~~-~--~s~iivTtR~~~~~~~~----------~~~~~~~l~~L~ 219 (800)
..+++.++|+||++.. ..++.+. .... . ...|++|.... ....+ .....+.+++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 2678899999999754 2333321 1111 1 22445555422 11111 113467899999
Q ss_pred hHHHHHHHHHHhCcccccC-CCChHHHHHHHHHHhCCChhHHHHHHHHH
Q 041843 220 DEDAWELFREKVGEETIES-HHSIPQLAQTVAKECGGLPLALIIIGRAM 267 (800)
Q Consensus 220 ~~e~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Plai~~~~~~l 267 (800)
.+|..+++...+....... ..-..+..+.|++.++|.|..|..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999987764322111 11236889999999999999999988765
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=4.6e-13 Score=132.35 Aligned_cols=240 Identities=20% Similarity=0.286 Sum_probs=160.2
Q ss_pred cccccCCCCC-CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccC-CCCccc
Q 041843 427 MKNSIGNLPT-VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISY-TSVTGL 504 (800)
Q Consensus 427 ~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~-~~i~~l 504 (800)
.+..+.++|. ++ +.-..+.|..|.++.+|+..|+.+++||.||||+|.....-|..|..|..|-.|-+.+ |+|+.+
T Consensus 54 r~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 54 RGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred cCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 3444555553 22 4567889999999999999999999999999999944444589999999988887776 899999
Q ss_pred chh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccc-
Q 041843 505 PEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSF- 582 (800)
Q Consensus 505 p~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~- 582 (800)
|.. ++.|..|+.|.+.-|+ +..++.+++..|++|..|.+++|.+... .-..+..+..++.+.+..|.+
T Consensus 132 ~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i---------~~~tf~~l~~i~tlhlA~np~i 201 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSI---------CKGTFQGLAAIKTLHLAQNPFI 201 (498)
T ss_pred hhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhh---------ccccccchhccchHhhhcCccc
Confidence 985 7999999999998765 5778888899999999999999977642 222455566666665554431
Q ss_pred -----hhHHHhhhcc--------------------------cccccceec--cc-ccccCCccccccCcCCcccCceEEe
Q 041843 583 -----EAYQTFLSSQ--------------------------KLRSCTQAL--FL-HEFCREESIGVADLADLEQLNTLYF 628 (800)
Q Consensus 583 -----~~~~~~~~~~--------------------------~l~~~l~~L--~l-~~~~~~~~~~~~~l~~l~~L~~L~l 628 (800)
.....+.... ++..+++.+ .+ ..+......+...|..+++|++|++
T Consensus 202 cdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl 281 (498)
T KOG4237|consen 202 CDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNL 281 (498)
T ss_pred cccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEecc
Confidence 1110000000 011111111 00 1111112222345777888899998
Q ss_pred eccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCCh--hhhcCCCCcEEEEecCc
Q 041843 629 RSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLT--FLVFAPNLKSISVRDCD 689 (800)
Q Consensus 629 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~~~ 689 (800)
++|.....-...|. ....+++|.|..+ ++..+. .+..+..|+.|+|.++.
T Consensus 282 snN~i~~i~~~aFe----------~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 282 SNNKITRIEDGAFE----------GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred CCCccchhhhhhhc----------chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCe
Confidence 88876553333332 3577888888776 455543 36678888888888865
No 32
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.13 E-value=9.4e-09 Score=103.43 Aligned_cols=248 Identities=18% Similarity=0.108 Sum_probs=141.4
Q ss_pred CcccchhHHH---HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 041843 62 PTVVGLQSQL---EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 138 (800)
Q Consensus 62 ~~~vgr~~~~---~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 138 (800)
.++||.+.-+ .-|.+++..+ .+....+|||+|+||||||+.++... ...|. .++...+-.+-++.+
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~-~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~-----~~sAv~~gvkdlr~i-- 92 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAG-HLHSMILWGPPGTGKTTLARLIAGTT---NAAFE-----ALSAVTSGVKDLREI-- 92 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcC-CCceeEEECCCCCCHHHHHHHHHHhh---CCceE-----EeccccccHHHHHHH--
Confidence 4567776655 2233334444 78889999999999999999999987 34433 233222211111222
Q ss_pred HhCCCCCCCCCCCHHHHHHHH-HHHhcCCceEEEEcccc--chhhhhhcCCcCCCCcEEEE--EeCCcccc---cccCcc
Q 041843 139 KIGLYTDSWKSKSLEEKAQDI-FKTLSKKKFALLLDDLW--ERVDLKKIGVPLPKNSAVVF--TTRFVDVC---GGMEAR 210 (800)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~l-~~~l~~~~~LlvlDdv~--~~~~~~~~~~~~~~~s~iiv--TtR~~~~~---~~~~~~ 210 (800)
++.- .....+++.+|++|.|- +..+-+.+.....+|..|+| ||.++... ......
T Consensus 93 -----------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 93 -----------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred -----------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhh
Confidence 2222 12234899999999993 55667777666777888877 55555431 223456
Q ss_pred ceEEeccCChHHHHHHHHHHhCcccccCC---C-ChHHHHHHHHHHhCCChhHHHHHHH---HHhcCC---CHHHHHHHH
Q 041843 211 RKFKVACLSDEDAWELFREKVGEETIESH---H-SIPQLAQTVAKECGGLPLALIIIGR---AMAYKK---TPEEWRYAI 280 (800)
Q Consensus 211 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~---~-~~~~~~~~i~~~~~g~Plai~~~~~---~l~~~~---~~~~w~~~l 280 (800)
.++.+++|+.++..+++.+.+........ . -.+++...+++.++|--.+.--... .+.... +.+..++.+
T Consensus 156 ~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l 235 (436)
T COG2256 156 RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEIL 235 (436)
T ss_pred heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHH
Confidence 79999999999999999885422221111 1 1256788899999986643322222 222111 234444444
Q ss_pred HHHHhhhhccCCChhHHHHHHhhhccCCChhhHHHHHhHhccCCCCcccchHHHHHH
Q 041843 281 EVLRRSASEFAGLGKEVYSLLKFSYDCLPNDAIRSCFLYCCLYPEDYSIDKRDLIDC 337 (800)
Q Consensus 281 ~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~l~~~~fp~~~~i~~~~li~~ 337 (800)
+.-........+...++..++.-|...-+++..-..+.-+---.+|..+-..+++++
T Consensus 236 ~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~ 292 (436)
T COG2256 236 QRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRI 292 (436)
T ss_pred hhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 332222222223335788888888888877533222222222344444444455443
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=4.9e-11 Score=110.01 Aligned_cols=138 Identities=29% Similarity=0.372 Sum_probs=38.2
Q ss_pred ccccCCCCCCCCCCcceEEEeecCCCccccccccc-CCCCCcEEEccCccccccccccccccccccEEeccCCCCcccch
Q 041843 428 KNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQ-SMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPE 506 (800)
Q Consensus 428 ~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~ 506 (800)
.+.++..+.+.++.+++.|+|.+|.++.+.. ++ .+.+|++|++++| .+..++ .+..+++|++|++++|.|+.++.
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 3444455555555666666666666655532 33 3566666666666 555554 35566666666666666666654
Q ss_pred hh-hcCccCceecccccccccccch-hhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEE
Q 041843 507 GL-KALVNLKCLNLDWADELVEVPQ-QLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLE 576 (800)
Q Consensus 507 ~i-~~l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 576 (800)
.+ ..+++|++|++++|.. ..+.. ..++.+++|++|++.+|.+..... .-...+..+++|+.|+
T Consensus 82 ~l~~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~------YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVCEKKN------YRLFVIYKLPSLKVLD 146 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTT------HHHHHHHH-TT-SEET
T ss_pred chHHhCCcCCEEECcCCcC-CChHHhHHHHcCCCcceeeccCCcccchhh------HHHHHHHHcChhheeC
Confidence 44 3466666666665532 22211 114566666666666665543221 2344455566666665
No 34
>PF05729 NACHT: NACHT domain
Probab=99.09 E-value=9.3e-10 Score=103.71 Aligned_cols=140 Identities=19% Similarity=0.311 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCC---CCCEEEEEEEcCccCHH---HHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPT---DFDYVIWVVVSKDLQLE---KIQETIGKKIGLYTDSWKSKSLEEKAQD 158 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~---~f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 158 (800)
+++.|+|.+|+||||+++.++.+...... .+..++|+......... .+...+..+.... ..........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-----IAPIEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-----hhhhHHHHHH
Confidence 58999999999999999999988733221 14577777766544322 3444444443221 1111111111
Q ss_pred HHHHhcCCceEEEEccccchhh-------------hhhcCCc-CCCCcEEEEEeCCccc---ccccCccceEEeccCChH
Q 041843 159 IFKTLSKKKFALLLDDLWERVD-------------LKKIGVP-LPKNSAVVFTTRFVDV---CGGMEARRKFKVACLSDE 221 (800)
Q Consensus 159 l~~~l~~~~~LlvlDdv~~~~~-------------~~~~~~~-~~~~s~iivTtR~~~~---~~~~~~~~~~~l~~L~~~ 221 (800)
+. -..+++++|+|++++... +..+... ...+.+++||+|.... .........+.+.+|+++
T Consensus 76 ~~--~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 76 LL--EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HH--HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 11 256899999999965422 2222222 4558999999997655 233344468999999999
Q ss_pred HHHHHHHHHh
Q 041843 222 DAWELFREKV 231 (800)
Q Consensus 222 e~~~l~~~~~ 231 (800)
+..+++++++
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998775
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=7.5e-12 Score=129.62 Aligned_cols=188 Identities=23% Similarity=0.344 Sum_probs=136.9
Q ss_pred EcCCCccccCccccccccceEEEccccccCCCC-CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc
Q 041843 403 YAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP-TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL 481 (800)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l 481 (800)
.+.+.+.++|..+..+..+..+.+..|.+..+| .+.++..|.+|+++.|++..+|.. ++.++ |++|-+++| .++.+
T Consensus 82 lsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNN-kl~~l 158 (722)
T KOG0532|consen 82 LSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNN-KLTSL 158 (722)
T ss_pred ccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEEecC-ccccC
Confidence 344566677777777777777778888887777 477778888888888888777776 34443 788888888 77888
Q ss_pred cccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccc
Q 041843 482 PTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVN 561 (800)
Q Consensus 482 p~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 561 (800)
|..|+.+.+|..||.+.|.+..+|..++.+.+|+.|++..|+ +..+|+. +..| .|..||++.|++. .
T Consensus 159 p~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis----------~ 225 (722)
T KOG0532|consen 159 PEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS----------Y 225 (722)
T ss_pred CcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee----------e
Confidence 888888888888888888888888888888888888888765 4667776 4544 3778888887776 5
Q ss_pred hHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccc
Q 041843 562 VAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEF 606 (800)
Q Consensus 562 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~ 606 (800)
++..+.++++|++|-+..|.+..-+..........-.++|+...|
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 777888888888888888877665554444443344556666555
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.08 E-value=3.8e-11 Score=126.80 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=9.4
Q ss_pred cCCcccCceEEeeccC
Q 041843 617 LADLEQLNTLYFRSCD 632 (800)
Q Consensus 617 l~~l~~L~~L~l~~~~ 632 (800)
+..+++|++|++++|.
T Consensus 217 ~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 217 LASLKSLEVLNLGDNN 232 (319)
T ss_pred hcccCCCCEEecCCCc
Confidence 3345666666666664
No 37
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.02 E-value=6.8e-09 Score=120.78 Aligned_cols=305 Identities=15% Similarity=0.204 Sum_probs=175.9
Q ss_pred ccchhHHHHHHHHHhcc--CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHH---HHHHHHH
Q 041843 64 VVGLQSQLEQVWRCLVQ--EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK---IQETIGK 138 (800)
Q Consensus 64 ~vgr~~~~~~l~~~l~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~---~~~~i~~ 138 (800)
++||+.+++.|...+.. .+...++.+.|.+|||||+++++|.....+.++.|-...+-.......+.. .++++..
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 69999999999998865 346679999999999999999999999844323332222222333333222 2233333
Q ss_pred Hh-------------------CCCC---------------CC-----CCCCCHHHHH-----HHHHHHh-cCCceEEEEc
Q 041843 139 KI-------------------GLYT---------------DS-----WKSKSLEEKA-----QDIFKTL-SKKKFALLLD 173 (800)
Q Consensus 139 ~l-------------------~~~~---------------~~-----~~~~~~~~~~-----~~l~~~l-~~~~~LlvlD 173 (800)
++ +... .+ ..+.....+. ..+.... +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22 1100 00 0001111111 1222222 3569999999
Q ss_pred cc-cchhh-hh---hcCCcCC--C--CcEEE--EEeCCc--ccccccCccceEEeccCChHHHHHHHHHHhCcccccCCC
Q 041843 174 DL-WERVD-LK---KIGVPLP--K--NSAVV--FTTRFV--DVCGGMEARRKFKVACLSDEDAWELFREKVGEETIESHH 240 (800)
Q Consensus 174 dv-~~~~~-~~---~~~~~~~--~--~s~ii--vTtR~~--~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~ 240 (800)
|+ |.+.. ++ .+....+ . ...|. .|.+.. .+.........+.|.||+..+...+.....+... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 99 64422 21 1111111 1 11222 222221 1112223446899999999999999999987643 1
Q ss_pred ChHHHHHHHHHHhCCChhHHHHHHHHHhcC------CCHHHHHHHHHHHHhhhhccCCChhHHHHHHhhhccCCChhhHH
Q 041843 241 SIPQLAQTVAKECGGLPLALIIIGRAMAYK------KTPEEWRYAIEVLRRSASEFAGLGKEVYSLLKFSYDCLPNDAIR 314 (800)
Q Consensus 241 ~~~~~~~~i~~~~~g~Plai~~~~~~l~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k 314 (800)
...+....|+++..|+|+.+..+-..+... .+...|+.-...+. ..+.-+++...+..-.+.||. ..|
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~-----~~~~~~~vv~~l~~rl~kL~~-~t~ 311 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG-----ILATTDAVVEFLAARLQKLPG-TTR 311 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC-----CchhhHHHHHHHHHHHhcCCH-HHH
Confidence 226789999999999999999998888763 34455554322221 112223456668888999998 799
Q ss_pred HHHhHhccCCCCcccchHHHHHHHHhcCCccccccchhhhHHHHHHHHHHhcccccc-------cCC---cEEEehHHHH
Q 041843 315 SCFLYCCLYPEDYSIDKRDLIDCWMCEGFLEEDKFGTQNRGSHIVTTLVRACLLEEV-------EDD---QVKMHDVVRD 384 (800)
Q Consensus 315 ~c~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~L~~~~ll~~~-------~~~---~~~~h~l~~~ 384 (800)
..+...|++...+. ...|...+-. .....+....+.|....++... ... +-..|+.+++
T Consensus 312 ~Vl~~AA~iG~~F~--l~~La~l~~~---------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqq 380 (849)
T COG3899 312 EVLKAAACIGNRFD--LDTLAALAED---------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQ 380 (849)
T ss_pred HHHHHHHHhCccCC--HHHHHHHHhh---------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHH
Confidence 99999999986654 4444332221 2233445555555555555421 111 1245777777
Q ss_pred HHHHH
Q 041843 385 MALWI 389 (800)
Q Consensus 385 ~~~~i 389 (800)
.+-..
T Consensus 381 aaY~~ 385 (849)
T COG3899 381 AAYNL 385 (849)
T ss_pred HHhcc
Confidence 76543
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=3.2e-10 Score=119.75 Aligned_cols=215 Identities=27% Similarity=0.241 Sum_probs=99.0
Q ss_pred CCCCcceEEEeecCCCcccccccccCCCC---CcEEEccCccccc-----ccccccccc-ccccEEeccCCCCcc-----
Q 041843 438 PTCPHLLTLFLNDNPLRTITGGFFQSMPC---LTVLKMSDNIMLR-----QLPTGISKL-VSLQLLDISYTSVTG----- 503 (800)
Q Consensus 438 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~---L~~L~Ls~~~~~~-----~lp~~i~~L-~~L~~L~L~~~~i~~----- 503 (800)
..+++|+.|++++|.+....+..+..+.+ |++|++++|. +. .+...+..+ ++|+.|++++|.++.
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 34556666666665554333322333332 6666666552 22 122333444 556666666665551
Q ss_pred cchhhhcCccCceeccccccccc----ccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEe
Q 041843 504 LPEGLKALVNLKCLNLDWADELV----EVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITF 579 (800)
Q Consensus 504 lp~~i~~l~~L~~L~l~~~~~l~----~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 579 (800)
++..+..+.+|++|++++|..-. .++.. +..+++|++|++++|.+.... .......+..+++|+.|++++
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~-----~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLDLNNNGLTDEG-----ASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHH-HHhCCCCCEEeccCCccChHH-----HHHHHHHhcccCCCCEEecCC
Confidence 33344455556666665553221 12222 334455666666555543210 001233344455566666655
Q ss_pred ccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccE
Q 041843 580 RSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEE 659 (800)
Q Consensus 580 ~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~ 659 (800)
|.+....... +........+.|++|++++|..... .... +......+++|+.
T Consensus 231 n~l~~~~~~~----------------------l~~~~~~~~~~L~~L~l~~n~i~~~---~~~~---l~~~~~~~~~L~~ 282 (319)
T cd00116 231 NNLTDAGAAA----------------------LASALLSPNISLLTLSLSCNDITDD---GAKD---LAEVLAEKESLLE 282 (319)
T ss_pred CcCchHHHHH----------------------HHHHHhccCCCceEEEccCCCCCcH---HHHH---HHHHHhcCCCccE
Confidence 5443211000 0000011247888899988865321 0000 0011123478899
Q ss_pred EeeecCCCCCCCh------hhhcC-CCCcEEEEecC
Q 041843 660 VTVDNCGNLKHLT------FLVFA-PNLKSISVRDC 688 (800)
Q Consensus 660 L~l~~c~~l~~l~------~l~~l-~~L~~L~l~~~ 688 (800)
++++++ .+..-+ .+... +.|++|++.+.
T Consensus 283 l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 283 LDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred EECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 998887 333321 12233 56777766553
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=99.00 E-value=5.7e-09 Score=103.01 Aligned_cols=150 Identities=16% Similarity=0.211 Sum_probs=93.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT 162 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 162 (800)
..+.+.|||++|+|||+||+++++... .....+.|+++.... .... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hhhH-----------------------HHHhh
Confidence 346789999999999999999999872 223455676653110 0000 11112
Q ss_pred hcCCceEEEEccccch---hhhhh-c---CCcC-CCCcEEEE-EeCC---------cccccccCccceEEeccCChHHHH
Q 041843 163 LSKKKFALLLDDLWER---VDLKK-I---GVPL-PKNSAVVF-TTRF---------VDVCGGMEARRKFKVACLSDEDAW 224 (800)
Q Consensus 163 l~~~~~LlvlDdv~~~---~~~~~-~---~~~~-~~~s~iiv-TtR~---------~~~~~~~~~~~~~~l~~L~~~e~~ 224 (800)
+. +.-+||+||++.. .+|+. + .... ..++.+|| |++. +.+...+.....+++++++.++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 22 2358999999753 22331 1 1111 22566655 4443 233333344568899999999999
Q ss_pred HHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHH
Q 041843 225 ELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGR 265 (800)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 265 (800)
+++++.+.......+ ++...-|++++.|..-.+..+-.
T Consensus 168 ~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 168 IVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 999988865443334 78888899988887765554443
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=1.3e-11 Score=127.90 Aligned_cols=172 Identities=28% Similarity=0.387 Sum_probs=135.9
Q ss_pred EEEEcCCCccccCccc--cccccceEEEccccccCCCC-CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 400 FLVYAGSGLTEAPADV--RGWEMGRRLSLMKNSIGNLP-TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 400 ~~~~~~~~~~~~~~~~--~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
.+...+..+++.|..- ..+......+++.|.+..+| .++.|..|..+.+..|.+..+|.. +.++..|.+|+|+.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N- 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN- 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-
Confidence 3445555555554322 23445567788888888888 477788888899998888888876 788999999999998
Q ss_pred ccccccccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCccc
Q 041843 477 MLRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFS 556 (800)
Q Consensus 477 ~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~ 556 (800)
.+..+|..++.|+ |+.|-+++|+++.+|..++.+..|..|+.+.|. +..+|.. ++++.+|+.|.+..|.+.
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~------ 202 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE------ 202 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh------
Confidence 8888998888876 899999999999999999988899999998664 5778877 789999999998888776
Q ss_pred ccccchHHHhhCCCCCcEEEEEeccchhHHH
Q 041843 557 SRYVNVAEELLGLKYLEVLEITFRSFEAYQT 587 (800)
Q Consensus 557 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 587 (800)
.++.++..|+ |..|+++.|.+..++.
T Consensus 203 ----~lp~El~~Lp-Li~lDfScNkis~iPv 228 (722)
T KOG0532|consen 203 ----DLPEELCSLP-LIRLDFSCNKISYLPV 228 (722)
T ss_pred ----hCCHHHhCCc-eeeeecccCceeecch
Confidence 5777787665 8889999888776653
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.97 E-value=3.8e-08 Score=106.49 Aligned_cols=177 Identities=16% Similarity=0.144 Sum_probs=108.0
Q ss_pred CcccchhHHHHH---HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQ---VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 138 (800)
Q Consensus 62 ~~~vgr~~~~~~---l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 138 (800)
.++||++..+.. +..++..+ ....+.|+|++|+||||+|+.+++.. ...| +.++....-..-.+.+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~-~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii- 81 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG-RLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVI- 81 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC-CCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHH-
Confidence 468999988766 77777665 56788999999999999999999886 2232 22222111111111111
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHH-hcCCceEEEEccccch--hhhhhcCCcCCCCcEEEEE--eCCccc--c-cccCcc
Q 041843 139 KIGLYTDSWKSKSLEEKAQDIFKT-LSKKKFALLLDDLWER--VDLKKIGVPLPKNSAVVFT--TRFVDV--C-GGMEAR 210 (800)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~--~~~~~~~~~~~~~s~iivT--tR~~~~--~-~~~~~~ 210 (800)
+..... ..+++.+|++|+++.. .+.+.+...+..+..++|. |.+... . ......
T Consensus 82 ------------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 82 ------------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred ------------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccc
Confidence 111111 2457889999999753 3444444444456655553 333221 1 111233
Q ss_pred ceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHH
Q 041843 211 RKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRA 266 (800)
Q Consensus 211 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 266 (800)
..+.+.+++.++..+++.+.+.........-.++..+.+++.++|.+..+..+...
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 67899999999999999887643110000122677889999999999766554433
No 42
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=7.7e-10 Score=102.10 Aligned_cols=128 Identities=26% Similarity=0.337 Sum_probs=56.1
Q ss_pred ccccceEEEccccccCCCCCCC-CCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccc-cccccccEE
Q 041843 417 GWEMGRRLSLMKNSIGNLPTVP-TCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGI-SKLVSLQLL 494 (800)
Q Consensus 417 ~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i-~~L~~L~~L 494 (800)
+..+++.|++.+|.+..+..+. .+.+|++|++++|.++.+.. +..+++|++|++++| .+..++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 3456789999999999888776 58899999999999998865 788999999999999 778886555 468999999
Q ss_pred eccCCCCcccc--hhhhcCccCceecccccccccccc---hhhhCCCCCCcEEEeeecC
Q 041843 495 DISYTSVTGLP--EGLKALVNLKCLNLDWADELVEVP---QQLLSNFSRLRVLRMFATG 548 (800)
Q Consensus 495 ~L~~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~lp---~~~~~~L~~L~~L~l~~~~ 548 (800)
++++|+|..+- ..+..+++|+.|++.+|... ..+ ..++..+++|+.||.....
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEETT
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEcc
Confidence 99999888753 35788999999999988653 333 2357889999999876653
No 43
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.93 E-value=1.3e-08 Score=95.64 Aligned_cols=172 Identities=20% Similarity=0.224 Sum_probs=93.2
Q ss_pred CCcccchhHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 136 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 136 (800)
-.+|||.++.++++.-++.. +.....+.+|||+|+||||||.-+++.. ...|. +.+...-....++ ..+
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl-~~i 95 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL-AAI 95 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-HHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-HHH
Confidence 46899999998887655432 3357789999999999999999999998 34442 2222110011111 111
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hh-------hh---------------hcCCcCCCCc
Q 041843 137 GKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VD-------LK---------------KIGVPLPKNS 192 (800)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~-------~~---------------~~~~~~~~~s 192 (800)
+.. + +++-+|++|++-.. .+ .+ .+...+++-+
T Consensus 96 l~~-----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 96 LTN-----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp HHT--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred HHh-----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 111 1 12345566666211 10 11 1111233345
Q ss_pred EEEEEeCCcccccccCcc--ceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHH
Q 041843 193 AVVFTTRFVDVCGGMEAR--RKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRA 266 (800)
Q Consensus 193 ~iivTtR~~~~~~~~~~~--~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 266 (800)
-|=-|||..-+...+... ...+++.++.+|-.+++.+.+..-.+..+ ++.+.+|++++.|-|.-..-+-..
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~---~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEID---EDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHhcCCChHHHHHHHHH
Confidence 566788865544333222 24589999999999999988765554444 789999999999999665544433
No 44
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=2.3e-07 Score=102.46 Aligned_cols=181 Identities=14% Similarity=0.154 Sum_probs=113.0
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCEEEEEEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP------------------TDFDYVIWVVV 123 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 123 (800)
.++||.+..++.|.+++..+.-...+.++|+.|+||||+|+.+++...... +.|..+++++.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDA 95 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDA 95 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecc
Confidence 578999999999999998774456778999999999999999988762110 11112233322
Q ss_pred cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hhhhhcCCc---CCCCcEEEEEe
Q 041843 124 SKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTT 198 (800)
Q Consensus 124 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~~~~---~~~~s~iivTt 198 (800)
.....++++ +++++... ..-..++.-++|||++... ..+..++.. .+.+.++|++|
T Consensus 96 as~rgVDdI-ReLIe~a~------------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 96 ASNRGVDEM-AALLERAV------------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred cccccHHHH-HHHHHHHH------------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 222111111 11111110 0011345568999999654 224443322 34477878777
Q ss_pred CCcccc-c-ccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh-hHHHHHH
Q 041843 199 RFVDVC-G-GMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP-LALIIIG 264 (800)
Q Consensus 199 R~~~~~-~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~ 264 (800)
++..-. . .......+.+.+++.++..+.+.+.+..+.+..+ .+....|++.++|.. -++..+-
T Consensus 157 td~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 157 TDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred CChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 754332 1 1234468999999999999999988765554333 778899999999866 4555433
No 45
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.83 E-value=2e-07 Score=103.36 Aligned_cols=205 Identities=15% Similarity=0.140 Sum_probs=121.0
Q ss_pred CCcccchhHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhhcccC--CCCC--CEEEEEEEcCccCHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDN--PTDF--DYVIWVVVSKDLQLEKI 132 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~--~~~f--~~~~wv~~~~~~~~~~~ 132 (800)
|..+.|||+++++|...|.. .+...++.|+|++|.|||+.++.+.+..... .... -.+++|++..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45688999999999988864 2233577899999999999999998776211 1111 24677888777788889
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc---CCceEEEEccccchh-----hhhhc-CCcCCCCcEEEE--EeCCc
Q 041843 133 QETIGKKIGLYTDSWKSKSLEEKAQDIFKTLS---KKKFALLLDDLWERV-----DLKKI-GVPLPKNSAVVF--TTRFV 201 (800)
Q Consensus 133 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlvlDdv~~~~-----~~~~~-~~~~~~~s~iiv--TtR~~ 201 (800)
+..|..++....+. ......+....+...+. +...+||||+++... .+-.+ ..+...+++|+| +|.+.
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999888543221 22233455556665552 224689999996431 12111 111122444443 34321
Q ss_pred cc--------ccccCccceEEeccCChHHHHHHHHHHhCcccccCC-CChHHHHHHHHHHhCCChhHHHHHHHHH
Q 041843 202 DV--------CGGMEARRKFKVACLSDEDAWELFREKVGEETIESH-HSIPQLAQTVAKECGGLPLALIIIGRAM 267 (800)
Q Consensus 202 ~~--------~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plai~~~~~~l 267 (800)
.. ...+. ...+..+|++.+|..+++..++.......+ ..++-+++.+++..|..-.||.++-.+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 21 11221 234677999999999999998854211112 1122223333333344556666555444
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.83 E-value=1.2e-09 Score=104.42 Aligned_cols=182 Identities=18% Similarity=0.219 Sum_probs=120.0
Q ss_pred ccccccccceEEEccccccCCCCCC-CCCCcceEEEeecCCCccccc-----------------------ccccCCCCCc
Q 041843 413 ADVRGWEMGRRLSLMKNSIGNLPTV-PTCPHLLTLFLNDNPLRTITG-----------------------GFFQSMPCLT 468 (800)
Q Consensus 413 ~~~~~~~~l~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~l~~~~~-----------------------~~~~~l~~L~ 468 (800)
.....+.++..+.++.++-+++-.+ ..-|.|.++.+.+..+...+. ..+...+.|.
T Consensus 208 f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lt 287 (490)
T KOG1259|consen 208 FNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELT 287 (490)
T ss_pred cchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhh
Confidence 4444556677777776665554432 222556666665544222110 0022345688
Q ss_pred EEEccCccccccccccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecC
Q 041843 469 VLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATG 548 (800)
Q Consensus 469 ~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~ 548 (800)
.||||+| .++.+.+++.-++.++.|++|+|.|..+-. +..|++|++||+++|. +.++... -.+|-|.++|.+..|.
T Consensus 288 elDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gw-h~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 288 ELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGW-HLKLGNIKTLKLAQNK 363 (490)
T ss_pred hcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhh-HhhhcCEeeeehhhhh
Confidence 8888888 777777777778888888888888877654 7778888888888664 4554332 4577788888888776
Q ss_pred CCCCCcccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEe
Q 041843 549 VGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYF 628 (800)
Q Consensus 549 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 628 (800)
+ ...+.+++|-+|..|++..|++..++.. .+++++|.|+.+.+
T Consensus 364 i-----------E~LSGL~KLYSLvnLDl~~N~Ie~ldeV--------------------------~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 364 I-----------ETLSGLRKLYSLVNLDLSSNQIEELDEV--------------------------NHIGNLPCLETLRL 406 (490)
T ss_pred H-----------hhhhhhHhhhhheeccccccchhhHHHh--------------------------cccccccHHHHHhh
Confidence 6 3456677777888888888877665542 35677888888888
Q ss_pred eccCCcc
Q 041843 629 RSCDWIK 635 (800)
Q Consensus 629 ~~~~~~~ 635 (800)
.+|+...
T Consensus 407 ~~NPl~~ 413 (490)
T KOG1259|consen 407 TGNPLAG 413 (490)
T ss_pred cCCCccc
Confidence 8877543
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.82 E-value=2.8e-08 Score=98.84 Aligned_cols=166 Identities=14% Similarity=0.135 Sum_probs=102.1
Q ss_pred hhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCC
Q 041843 67 LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS 146 (800)
Q Consensus 67 r~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 146 (800)
.+..++++.+++... ....+.|+|+.|+|||++|+.+++.. .......+++++..-.. ..
T Consensus 22 ~~~~~~~l~~~~~~~-~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~~~~------~~---------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK-GDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAELAQ------AD---------- 81 (226)
T ss_pred cHHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHHHHH------hH----------
Confidence 455677777775543 56799999999999999999999887 22334456666543211 00
Q ss_pred CCCCCHHHHHHHHHHHhcCCceEEEEccccchh---h-hhhcCCcC----CCCcEEEEEeCCcccc---------cccCc
Q 041843 147 WKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV---D-LKKIGVPL----PKNSAVVFTTRFVDVC---------GGMEA 209 (800)
Q Consensus 147 ~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---~-~~~~~~~~----~~~s~iivTtR~~~~~---------~~~~~ 209 (800)
..+...+.+ .-+||+||++... . .+.+...+ ..+..+|+||+..... ..+..
T Consensus 82 ----------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 82 ----------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred ----------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc
Confidence 011112222 2489999996432 1 22221111 2246788888743211 11122
Q ss_pred cceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHH
Q 041843 210 RRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRA 266 (800)
Q Consensus 210 ~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 266 (800)
...+.+++++.++...++...+.......+ ++..+.+++.+.|+|..+..+...
T Consensus 151 ~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred CeeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHH
Confidence 357899999999999999876543322222 677888888899998777665433
No 48
>PRK04195 replication factor C large subunit; Provisional
Probab=98.81 E-value=4.7e-07 Score=100.00 Aligned_cols=181 Identities=19% Similarity=0.205 Sum_probs=112.3
Q ss_pred CCcccchhHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
-.+++|.++.++++.+++.. +...+.+.|+|++|+||||+|+++++.. .++ ++-++.+...+...+.. ++
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~~i~~-~i 85 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTADVIER-VA 85 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHHHHHH-HH
Confidence 35689999999999999864 2236899999999999999999999987 233 33344444333332222 22
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh------hhhhcCCcC-CCCcEEEEEeCCccccc--c-c
Q 041843 138 KKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV------DLKKIGVPL-PKNSAVVFTTRFVDVCG--G-M 207 (800)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------~~~~~~~~~-~~~s~iivTtR~~~~~~--~-~ 207 (800)
....... .....++-+||+|+++... .+..+...+ ..+..||+|+.+..-.. . -
T Consensus 86 ~~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHh
Confidence 2211100 0011367899999997532 133332211 12455666665432211 1 1
Q ss_pred CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHH
Q 041843 208 EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAM 267 (800)
Q Consensus 208 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 267 (800)
.....+.+.+++.++....+.+.+.......+ .++...|++.++|....+......+
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 23467899999999999999887755443333 6789999999999776554433333
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.2e-09 Score=110.24 Aligned_cols=139 Identities=19% Similarity=0.187 Sum_probs=89.3
Q ss_pred CCCCcceEEEeecCCCccccc-ccccCCCCCcEEEccCcccccc---ccccccccccccEEeccCCCCcccchh--hhcC
Q 041843 438 PTCPHLLTLFLNDNPLRTITG-GFFQSMPCLTVLKMSDNIMLRQ---LPTGISKLVSLQLLDISYTSVTGLPEG--LKAL 511 (800)
Q Consensus 438 ~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~Ls~~~~~~~---lp~~i~~L~~L~~L~L~~~~i~~lp~~--i~~l 511 (800)
.++++|+...|.++.....+. .....|++++.||||+| .+.. +-.....|++|+.|+|+.|++.....+ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 567888999998888655543 34677889999999988 4332 334456788889999988876653222 2356
Q ss_pred ccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccchhHH
Q 041843 512 VNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQ 586 (800)
Q Consensus 512 ~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 586 (800)
.+|+.|.+++|..-..--......+++|+.|++..|.... .......-++.|+.|+++.|.+...+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~---------~~~~~~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL---------IKATSTKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc---------eecchhhhhhHHhhccccCCcccccc
Confidence 7788888888754322112235567888888888774221 11222233566777777777665543
No 50
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=3.6e-07 Score=99.95 Aligned_cols=173 Identities=14% Similarity=0.133 Sum_probs=110.6
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCEEEEEEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP------------------TDFDYVIWVVV 123 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 123 (800)
.++||.+...+.|.+++..+.-...+.++|+.|+||||+|+.+++...... +.+.-++.++.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDA 94 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDA 94 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecc
Confidence 568999999999999998774467889999999999999999988862100 01111222222
Q ss_pred cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-----hcCCceEEEEccccch--hhhhhcC---CcCCCCcE
Q 041843 124 SKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT-----LSKKKFALLLDDLWER--VDLKKIG---VPLPKNSA 193 (800)
Q Consensus 124 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~~~~~~---~~~~~~s~ 193 (800)
.... ..++.. .+... ..++.-++|+|++... .....+. ...+.+.+
T Consensus 95 As~~-----------------------~VddIR-eli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~ 150 (702)
T PRK14960 95 ASRT-----------------------KVEDTR-ELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVK 150 (702)
T ss_pred cccC-----------------------CHHHHH-HHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcE
Confidence 1111 122211 11111 2356779999999643 2333332 22344667
Q ss_pred EEEEeCCccc-c-cccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHH
Q 041843 194 VVFTTRFVDV-C-GGMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALI 261 (800)
Q Consensus 194 iivTtR~~~~-~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 261 (800)
+|++|.+..- . ........+++.+++.++..+.+.+.+.......+ .+....|++.++|.+..+.
T Consensus 151 FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 151 FLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred EEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 7777765332 1 11234568999999999999999888765543333 6788999999999885443
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.80 E-value=4e-09 Score=114.61 Aligned_cols=174 Identities=26% Similarity=0.352 Sum_probs=86.9
Q ss_pred ccceEEEccccccCCCCCCCCCC--cceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEec
Q 041843 419 EMGRRLSLMKNSIGNLPTVPTCP--HLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDI 496 (800)
Q Consensus 419 ~~l~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L 496 (800)
+.+..+.+.++.+..++...... +|+.|++++|.+..++.. +..+++|+.|++++| .+..+|...+.+.+|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhhheec
Confidence 34555555555555555443332 455555555555554322 445555555555555 45555554445555555555
Q ss_pred cCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEE
Q 041843 497 SYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLE 576 (800)
Q Consensus 497 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 576 (800)
++|++..+|..+..+.+|++|.+++|.. ..++.. +.++.++..|.+..+... ..+..++.++.|+.|+
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~-~~~~~~l~~l~l~~n~~~----------~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSI-IELLSS-LSNLKNLSGLELSNNKLE----------DLPESIGNLSNLETLD 261 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcc-eecchh-hhhcccccccccCCceee----------eccchhccccccceec
Confidence 5555555555544445555555554432 222222 445555555554444332 1233444444555555
Q ss_pred EEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcc
Q 041843 577 ITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIK 635 (800)
Q Consensus 577 l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 635 (800)
++.|.++.+. .+..+.+|+.|+++++....
T Consensus 262 ~s~n~i~~i~-----------------------------~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 262 LSNNQISSIS-----------------------------SLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cccccccccc-----------------------------cccccCccCEEeccCccccc
Confidence 5544443321 14556677777777766544
No 52
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.75 E-value=1.5e-07 Score=93.34 Aligned_cols=168 Identities=16% Similarity=0.136 Sum_probs=100.3
Q ss_pred cccchhH-HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 63 TVVGLQS-QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 63 ~~vgr~~-~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
.++|... .+..+.++.... ..+.+.|+|+.|+|||+|++++++... .....+.++++.....
T Consensus 24 f~~~~n~~a~~~l~~~~~~~-~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQE-HSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW------------- 86 (235)
T ss_pred cccCccHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh-------------
Confidence 3446333 344444443333 457899999999999999999998872 2345666766643110
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch---hhhhh----cCCc-CCCC-cEEEEEeCCccc---------
Q 041843 142 LYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER---VDLKK----IGVP-LPKN-SAVVFTTRFVDV--------- 203 (800)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---~~~~~----~~~~-~~~~-s~iivTtR~~~~--------- 203 (800)
...+ +.+.+.. --+|++||+... .+|+. +... ...| .++|+||+....
T Consensus 87 ---------~~~~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 87 ---------FVPE----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred ---------hhHH----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 0011 1111111 237899999532 22221 1111 2224 479999985422
Q ss_pred ccccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHH
Q 041843 204 CGGMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIG 264 (800)
Q Consensus 204 ~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 264 (800)
...+....++++++++.++-.+++.+++.......+ ++...-|++++.|..-.+..+-
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHH
Confidence 222334468999999999999999887654333333 7888888888887765554443
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.4e-09 Score=109.67 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=107.0
Q ss_pred ccccceEEEccccccCCCC---CCCCCCcceEEEeecCCCcccc--cccccCCCCCcEEEccCcccccccccc--ccccc
Q 041843 417 GWEMGRRLSLMKNSIGNLP---TVPTCPHLLTLFLNDNPLRTIT--GGFFQSMPCLTVLKMSDNIMLRQLPTG--ISKLV 489 (800)
Q Consensus 417 ~~~~l~~l~l~~~~~~~l~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~Ls~~~~~~~lp~~--i~~L~ 489 (800)
.+++|+.+.+.++.+...+ ....|++++.|+|+.|-+..+. -.+...+++|+.|+++.| .+...-++ -..+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhh
Confidence 4567778888887776665 4677888888888888765433 234567888888988888 33322111 23578
Q ss_pred cccEEeccCCCCcc--cchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhh
Q 041843 490 SLQLLDISYTSVTG--LPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELL 567 (800)
Q Consensus 490 ~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 567 (800)
+|+.|.|++|.++. +-.....+++|+.|++.+|.....-... ..-+..|+.|++++|.+... .....++
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~--------~~~~~~~ 268 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF--------DQGYKVG 268 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc--------ccccccc
Confidence 88888888887764 3334556788888888887422211111 34567888888888877642 2334567
Q ss_pred CCCCCcEEEEEeccchhHH
Q 041843 568 GLKYLEVLEITFRSFEAYQ 586 (800)
Q Consensus 568 ~l~~L~~L~l~~~~~~~~~ 586 (800)
.++.|+.|+++.+.++.+.
T Consensus 269 ~l~~L~~Lnls~tgi~si~ 287 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIA 287 (505)
T ss_pred cccchhhhhccccCcchhc
Confidence 7788888888877776543
No 54
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=3.9e-07 Score=96.70 Aligned_cols=173 Identities=16% Similarity=0.196 Sum_probs=107.1
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCC------------------CCCEEEEEEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT------------------DFDYVIWVVV 123 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~ 123 (800)
.+++|.+..++.+.+.+..+.-...+.++|+.|+||||+|+.+++....... .+....+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~ 95 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDA 95 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecc
Confidence 5789999999999999887644567899999999999999999987621000 0111122211
Q ss_pred cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccchh--hhhhcC---CcCCCCcE
Q 041843 124 SKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWERV--DLKKIG---VPLPKNSA 193 (800)
Q Consensus 124 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~~~---~~~~~~s~ 193 (800)
... ...++ .+.+.+.+ .+++-++|+|+++... .+..+. ...+...+
T Consensus 96 ~~~-----------------------~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 96 ASR-----------------------TKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred ccc-----------------------CCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 111 11111 12222222 2456699999996542 233332 22234666
Q ss_pred EEEEeCCcc-cccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHH
Q 041843 194 VVFTTRFVD-VCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALI 261 (800)
Q Consensus 194 iivTtR~~~-~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 261 (800)
+|++|.+.. +... ......+++.+++.++..+.+...+.......+ ++.+..|++.++|.|..+.
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 777665432 2221 123468999999999999999887654332222 6778889999999886433
No 55
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.75 E-value=3e-07 Score=97.74 Aligned_cols=191 Identities=14% Similarity=0.152 Sum_probs=110.0
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-CEEEEEEEcCccCHHHHHHHHHH--
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF-DYVIWVVVSKDLQLEKIQETIGK-- 138 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~-- 138 (800)
..++|++..++++.+++..+ ..+.+.++|+.|+||||+|+++++... . ..+ ...+.++++.... .....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~-~~~~lll~Gp~GtGKT~la~~~~~~l~-~-~~~~~~~~~i~~~~~~~--~~~~~~~~~~ 89 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP-NLPHLLVQGPPGSGKTAAVRALARELY-G-DPWENNFTEFNVADFFD--QGKKYLVEDP 89 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhc-C-cccccceEEechhhhhh--cchhhhhcCc
Confidence 57899999999999988776 556788999999999999999998872 1 111 1234444432110 00000000
Q ss_pred ----HhCCCCCCCCCCCHHHHHHHHHHHh------cCCceEEEEccccchh-----hhhhcCCcCCCCcEEEEEeCCcc-
Q 041843 139 ----KIGLYTDSWKSKSLEEKAQDIFKTL------SKKKFALLLDDLWERV-----DLKKIGVPLPKNSAVVFTTRFVD- 202 (800)
Q Consensus 139 ----~l~~~~~~~~~~~~~~~~~~l~~~l------~~~~~LlvlDdv~~~~-----~~~~~~~~~~~~s~iivTtR~~~- 202 (800)
..+.. .. ......+..+.+.+.. .+.+-+||+||++... .+..+....+...++|+|+....
T Consensus 90 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 90 RFAHFLGTD-KR-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred chhhhhhhh-hh-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 00000 00 0001111222222111 1344589999996432 12223223344577777775322
Q ss_pred ccccc-CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHH
Q 041843 203 VCGGM-EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALII 262 (800)
Q Consensus 203 ~~~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 262 (800)
+...+ .....+.+.+++.++..+++.+.+.......+ .+....+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 22211 23357889999999999999887754443323 77889999999998755443
No 56
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.75 E-value=1.3e-07 Score=93.29 Aligned_cols=173 Identities=17% Similarity=0.134 Sum_probs=111.8
Q ss_pred cccchhHHHHH---HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHH
Q 041843 63 TVVGLQSQLEQ---VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKK 139 (800)
Q Consensus 63 ~~vgr~~~~~~---l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 139 (800)
++||.+..+.+ |..++.++ +.+.+.+||++|+||||||+.++... +.+- ..||..+....-..-.++|.++
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~-~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQN-RIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcC-CCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHH
Confidence 47777765533 33334445 78999999999999999999999886 2322 6677777655444444444443
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEcccc--chhhhhhcCCcCCCCcEEEE--EeCCccc---ccccCccce
Q 041843 140 IGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLW--ERVDLKKIGVPLPKNSAVVF--TTRFVDV---CGGMEARRK 212 (800)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~--~~~~~~~~~~~~~~~s~iiv--TtR~~~~---~~~~~~~~~ 212 (800)
... ...+.++|.+|++|.|- +..+.+.+......|..++| ||.++.. ...+....+
T Consensus 213 aq~-----------------~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~V 275 (554)
T KOG2028|consen 213 AQN-----------------EKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRV 275 (554)
T ss_pred HHH-----------------HHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccce
Confidence 321 11245788999999993 45666667555666877776 6665544 222345578
Q ss_pred EEeccCChHHHHHHHHHHhC---cccc---cCCC----ChHHHHHHHHHHhCCChh
Q 041843 213 FKVACLSDEDAWELFREKVG---EETI---ESHH----SIPQLAQTVAKECGGLPL 258 (800)
Q Consensus 213 ~~l~~L~~~e~~~l~~~~~~---~~~~---~~~~----~~~~~~~~i~~~~~g~Pl 258 (800)
+.+++|+.++...++.+... .... ..+. -...+.+-++..|+|-..
T Consensus 276 fvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 276 FVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred eEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 99999999999999987542 2211 1111 124566777778888653
No 57
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=2.2e-07 Score=104.84 Aligned_cols=179 Identities=14% Similarity=0.149 Sum_probs=110.0
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCC------------------CCCEEEEEEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT------------------DFDYVIWVVV 123 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~ 123 (800)
.++||.+..++.|.+++..+.-...+.++|+.|+||||+|+.+++....... .|..+++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidA 95 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA 95 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecc
Confidence 5789999999999999887633455689999999999999999988721100 0111222221
Q ss_pred cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCceEEEEccccch--hhhhhcCCc---CCCCcEEEEE
Q 041843 124 SKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFK-TLSKKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFT 197 (800)
Q Consensus 124 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~--~~~~~~~~~---~~~~s~iivT 197 (800)
.....+..+ +.+. ..+.. -..+++-++|||++... .....++.. .+...++|++
T Consensus 96 as~~kVDdI-ReLi-------------------e~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 96 ASRTKVDDT-RELL-------------------DNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred ccccCHHHH-HHHH-------------------HHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 111111111 1111 11111 12467789999999643 334443222 3345666665
Q ss_pred eCC-cccccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHH
Q 041843 198 TRF-VDVCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIII 263 (800)
Q Consensus 198 tR~-~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 263 (800)
|.+ ..+... ......|++.+++.++..+.+.+.+.......+ .+....|++.++|.|.-+..+
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~e---deAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFE---AEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 554 333322 223468999999999999999887754332222 678899999999988644433
No 58
>PRK08727 hypothetical protein; Validated
Probab=98.73 E-value=1.6e-07 Score=92.89 Aligned_cols=164 Identities=13% Similarity=0.107 Sum_probs=97.2
Q ss_pred cccchh-HHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 63 TVVGLQ-SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 63 ~~vgr~-~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
+|++.. ..+..+....... ....+.|+|+.|+|||+|++++++... .....+.++++.+ ....+.
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~-~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~---- 85 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQ-SSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR---- 85 (233)
T ss_pred hccCCcHHHHHHHHHHHhcc-CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH----
Confidence 455444 3444444333322 345799999999999999999998872 2334566666422 111111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch---hhhh-hc---CCc-CCCCcEEEEEeCCccc---------c
Q 041843 142 LYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER---VDLK-KI---GVP-LPKNSAVVFTTRFVDV---------C 204 (800)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---~~~~-~~---~~~-~~~~s~iivTtR~~~~---------~ 204 (800)
...+.+. +.-+||+||+... ..+. .+ ... ...+..||+|++...- .
T Consensus 86 ----------------~~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 86 ----------------DALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred ----------------HHHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 1111221 2358999998532 1111 11 111 1226679999984222 1
Q ss_pred cccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHH
Q 041843 205 GGMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLAL 260 (800)
Q Consensus 205 ~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 260 (800)
..+.....+++++++.++-.+++.+++.......+ ++....|+++++|-.-.+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 12223458899999999999999987754333333 778888888888765444
No 59
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.72 E-value=1.3e-06 Score=99.47 Aligned_cols=168 Identities=21% Similarity=0.296 Sum_probs=100.8
Q ss_pred CcccchhHHHH---HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 041843 62 PTVVGLQSQLE---QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 138 (800)
Q Consensus 62 ~~~vgr~~~~~---~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 138 (800)
.+|+|.+..+. .+.+.+..+ ....+.|+|++|+||||+|+.+++.. ...|. .++... ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~-~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~-------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD-RVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVK-------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhH--------
Confidence 46899998875 455555555 66788999999999999999999876 33331 111110 0011
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHh--cCCceEEEEccccc--hhhhhhcCCcCCCCcEEEEE--eCCcc--ccc-ccCc
Q 041843 139 KIGLYTDSWKSKSLEEKAQDIFKTL--SKKKFALLLDDLWE--RVDLKKIGVPLPKNSAVVFT--TRFVD--VCG-GMEA 209 (800)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~--~~~~~~~~~~~~~~s~iivT--tR~~~--~~~-~~~~ 209 (800)
+..+......+.+ .+++.++|+||++. ..+.+.+...+..+..++++ |.++. +.. ....
T Consensus 92 ------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR 159 (725)
T PRK13341 92 ------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSR 159 (725)
T ss_pred ------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhcc
Confidence 0111112222222 24678999999964 34444554444456656654 33321 111 1122
Q ss_pred cceEEeccCChHHHHHHHHHHhC-------cccccCCCChHHHHHHHHHHhCCChhHH
Q 041843 210 RRKFKVACLSDEDAWELFREKVG-------EETIESHHSIPQLAQTVAKECGGLPLAL 260 (800)
Q Consensus 210 ~~~~~l~~L~~~e~~~l~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~g~Plai 260 (800)
...+.+++++.++...++.+.+. ...... .++....|++.+.|....+
T Consensus 160 ~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I---~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 160 SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL---EPEAEKHLVDVANGDARSL 214 (725)
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC---CHHHHHHHHHhCCCCHHHH
Confidence 45799999999999999988764 111122 2677889999999876433
No 60
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=8.7e-07 Score=92.76 Aligned_cols=198 Identities=16% Similarity=0.213 Sum_probs=129.6
Q ss_pred CcccchhHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 138 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 138 (800)
..+.+|+++++++...|.. +..+.-+.|+|+.|+|||+.++.+.+.......... +++|++....+..+++..|++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 4589999999999988765 334455999999999999999999999833222333 899999999999999999999
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhc--CCceEEEEccccchhhh-----hhcCCcCCC-CcE--EEEEeCCccc-----
Q 041843 139 KIGLYTDSWKSKSLEEKAQDIFKTLS--KKKFALLLDDLWERVDL-----KKIGVPLPK-NSA--VVFTTRFVDV----- 203 (800)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~-----~~~~~~~~~-~s~--iivTtR~~~~----- 203 (800)
+++... .......+....+.+.+. ++.+++|||+++....- -.+...... .++ ||..+-+...
T Consensus 96 ~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 96 KLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 986221 234556677777777775 47899999999644221 122111111 333 3334443322
Q ss_pred ---ccccCccceEEeccCChHHHHHHHHHHhCc---ccccCCCChHHHHHHHHHHhCC-ChhHHHHHH
Q 041843 204 ---CGGMEARRKFKVACLSDEDAWELFREKVGE---ETIESHHSIPQLAQTVAKECGG-LPLALIIIG 264 (800)
Q Consensus 204 ---~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~---~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~ 264 (800)
...++. ..+..+|.+.+|-.+++..++.. .. ..+++.-+.+..++..-+| --.||..+-
T Consensus 174 ~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 174 PRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 222233 34889999999999999988732 22 2233334445555555554 444554443
No 61
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=1.3e-09 Score=104.30 Aligned_cols=102 Identities=28% Similarity=0.429 Sum_probs=45.2
Q ss_pred ccccceEEEccccccCCCCC-CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEe
Q 041843 417 GWEMGRRLSLMKNSIGNLPT-VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLD 495 (800)
Q Consensus 417 ~~~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~ 495 (800)
.|+.+..+++++|.+..+.. ..-.|++|.|+++.|.+..+.. +..+++|..||||+| .+..+-..-.+|-|.++|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEeeee
Confidence 34444445555554444432 2333444445554444444332 344444444444444 3333333223344444444
Q ss_pred ccCCCCcccchhhhcCccCceeccccc
Q 041843 496 ISYTSVTGLPEGLKALVNLKCLNLDWA 522 (800)
Q Consensus 496 L~~~~i~~lp~~i~~l~~L~~L~l~~~ 522 (800)
|++|.|..+. ++++|.+|..||+++|
T Consensus 359 La~N~iE~LS-GL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 359 LAQNKIETLS-GLRKLYSLVNLDLSSN 384 (490)
T ss_pred hhhhhHhhhh-hhHhhhhheecccccc
Confidence 4444444432 3444444444444444
No 62
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=2.5e-07 Score=100.93 Aligned_cols=175 Identities=17% Similarity=0.172 Sum_probs=109.3
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC---C--------------------CCCEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP---T--------------------DFDYV 118 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~---~--------------------~f~~~ 118 (800)
.++||.+..++.|.+++..+.-...+.++|+.|+||||+|+.+++...... . .+..+
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDv 95 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDY 95 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcc
Confidence 568999999999999998874456779999999999999999988872110 0 00111
Q ss_pred EEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH----hcCCceEEEEccccch--hhhhhcCCcC---C
Q 041843 119 IWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT----LSKKKFALLLDDLWER--VDLKKIGVPL---P 189 (800)
Q Consensus 119 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~~~~~~~~~---~ 189 (800)
++++.... ...++..+.+... ..++.-++|+|+++.. .....++..+ +
T Consensus 96 iEIdAas~-----------------------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP 152 (700)
T PRK12323 96 IEMDAASN-----------------------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP 152 (700)
T ss_pred eEeccccc-----------------------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC
Confidence 22222111 1222222211111 2456679999999644 3344443332 3
Q ss_pred CCcEEEEEeC-Ccccccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHH
Q 041843 190 KNSAVVFTTR-FVDVCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALII 262 (800)
Q Consensus 190 ~~s~iivTtR-~~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 262 (800)
.+.++|++|. ...+... ......+.+..++.++..+.+.+.+.......+ .+..+.|++.++|.|.-...
T Consensus 153 ~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred CCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 3555555444 3444322 233468999999999999999887754443322 56678899999999864443
No 63
>PF14516 AAA_35: AAA-like domain
Probab=98.70 E-value=1.8e-05 Score=82.66 Aligned_cols=200 Identities=14% Similarity=0.119 Sum_probs=123.1
Q ss_pred CCCCcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc-----cCHHHHH
Q 041843 59 PTEPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-----LQLEKIQ 133 (800)
Q Consensus 59 ~~~~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~ 133 (800)
+..+.+|.|...-+++.+.+.+. ...+.|.|+..+|||+|..++.+.. ...-..++++++..- .+...++
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~--G~~~~I~apRq~GKTSll~~l~~~l---~~~~~~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP--GSYIRIKAPRQMGKTSLLLRLLERL---QQQGYRCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC--CCEEEEECcccCCHHHHHHHHHHHH---HHCCCEEEEEEeecCCCcccCCHHHHH
Confidence 34567789998888888888763 2799999999999999999998887 333455668887652 2445444
Q ss_pred ----HHHHHHhCCCCCC-----CCCCCHHHHHHHHHHHh---cCCceEEEEccccchhh--------hhhcCCc------
Q 041843 134 ----ETIGKKIGLYTDS-----WKSKSLEEKAQDIFKTL---SKKKFALLLDDLWERVD--------LKKIGVP------ 187 (800)
Q Consensus 134 ----~~i~~~l~~~~~~-----~~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~--------~~~~~~~------ 187 (800)
..+.++++....- ............+.+.+ .+++.+|++|+|+.... +..+...
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 4445555443200 00111122222333322 26899999999974311 1111110
Q ss_pred CCC-Cc--EEEEEeCCccccc-----ccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhH
Q 041843 188 LPK-NS--AVVFTTRFVDVCG-----GMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLA 259 (800)
Q Consensus 188 ~~~-~s--~iivTtR~~~~~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (800)
.+. .+ -|++.+....... .......+.|++|+.+|+..|+.++-.... ....++|...+||+|.-
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYL 235 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHH
Confidence 111 12 2222222111111 112345789999999999999987743322 44499999999999999
Q ss_pred HHHHHHHHhcC
Q 041843 260 LIIIGRAMAYK 270 (800)
Q Consensus 260 i~~~~~~l~~~ 270 (800)
+..++..+...
T Consensus 236 v~~~~~~l~~~ 246 (331)
T PF14516_consen 236 VQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHc
Confidence 99999998663
No 64
>PLN03025 replication factor C subunit; Provisional
Probab=98.69 E-value=3.4e-07 Score=95.61 Aligned_cols=177 Identities=13% Similarity=0.127 Sum_probs=107.5
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-EEEEEEEcCccCHHHHHHHHHHHh
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-YVIWVVVSKDLQLEKIQETIGKKI 140 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 140 (800)
.+++|.++.++.+..++..+ ..+.+.++|++|+||||+|+.+++... ...|. .++-++.+...+...+. ++....
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~-~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~vr-~~i~~~ 88 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG-NMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDVVR-NKIKMF 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHHHH-HHHHHH
Confidence 46899999999988887765 556688999999999999999998862 11222 22323333332322221 111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh--h---hhhcCCcCCCCcEEEEEeCCc-cccccc-CccceE
Q 041843 141 GLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV--D---LKKIGVPLPKNSAVVFTTRFV-DVCGGM-EARRKF 213 (800)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~---~~~~~~~~~~~s~iivTtR~~-~~~~~~-~~~~~~ 213 (800)
..... ..-.++.-++|+|+++... . +..+....+..+++|+++... .+...+ .....+
T Consensus 89 ~~~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 89 AQKKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred Hhccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 00000 0002456799999997531 2 323223334567777766532 221111 223578
Q ss_pred EeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHH
Q 041843 214 KVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLAL 260 (800)
Q Consensus 214 ~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 260 (800)
++++++.++..+.+...+.......+ ++....|++.++|....+
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 99999999999999888765543333 677889999999876433
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.69 E-value=1.1e-09 Score=109.94 Aligned_cols=83 Identities=20% Similarity=0.197 Sum_probs=41.0
Q ss_pred cceEEEeecCCCcccc--cccccCCCCCcEEEccCccccccc-cccc-cccccccEEeccCC-CCcc--cchhhhcCccC
Q 041843 442 HLLTLFLNDNPLRTIT--GGFFQSMPCLTVLKMSDNIMLRQL-PTGI-SKLVSLQLLDISYT-SVTG--LPEGLKALVNL 514 (800)
Q Consensus 442 ~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i-~~L~~L~~L~L~~~-~i~~--lp~~i~~l~~L 514 (800)
.|+.|.+.++.-.+.. -.+...++++..|.+.+|..++.- -.++ ..+.+|++|++..| .|+. +-.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4556666665421111 123355666666666666433321 1111 23556666666664 4444 22223445666
Q ss_pred ceeccccccc
Q 041843 515 KCLNLDWADE 524 (800)
Q Consensus 515 ~~L~l~~~~~ 524 (800)
++|+++.|..
T Consensus 219 ~~lNlSwc~q 228 (483)
T KOG4341|consen 219 KYLNLSWCPQ 228 (483)
T ss_pred HHhhhccCch
Confidence 6666666643
No 66
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=8.4e-07 Score=97.11 Aligned_cols=189 Identities=19% Similarity=0.142 Sum_probs=109.2
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
.+++|.+..++.|..++..+.-...+.++|++|+||||+|+.+++.... .+.+...+|.+.+... +......-...+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c-~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC-SGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc-cCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 4689999999999999887744466799999999999999999988721 1222222332221100 0000000000000
Q ss_pred CCCCCCCCCCHHHHHHHHHHH-----hcCCceEEEEccccch--hhhhhcCCcC---CCCcEEEEEeCC-ccccccc-Cc
Q 041843 142 LYTDSWKSKSLEEKAQDIFKT-----LSKKKFALLLDDLWER--VDLKKIGVPL---PKNSAVVFTTRF-VDVCGGM-EA 209 (800)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~~~~~~~~~---~~~s~iivTtR~-~~~~~~~-~~ 209 (800)
.. .....+. ++.+.+. ..+++-++|+|+++.. ..+..+...+ +....+|++|.. ..+...+ ..
T Consensus 92 ~~----~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 92 AA----SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred cc----ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 00 0111111 1122222 2356679999999743 3344443322 234455555543 3332222 23
Q ss_pred cceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHH
Q 041843 210 RRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLAL 260 (800)
Q Consensus 210 ~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 260 (800)
...+++.+++.++..+.+.+.+.......+ ++....|++.++|.+.-+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 468999999999999999988755443333 678899999999988544
No 67
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=1e-06 Score=91.90 Aligned_cols=176 Identities=13% Similarity=0.179 Sum_probs=111.4
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhccc---CCCCCCEEEEEEE-cCccCHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVD---NPTDFDYVIWVVV-SKDLQLEKIQETIG 137 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~-~~~~~~~~~~~~i~ 137 (800)
.+++|.+...+++...+..+.-.+...++|+.|+||||+|+.++..... ...+.+...|... ......+++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 3578999999999999987745577899999999999999999986521 2345565555442 222233332 2222
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEcccc--chhhhhhcC---CcCCCCcEEEEEeCCcccc-cc-cCcc
Q 041843 138 KKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLW--ERVDLKKIG---VPLPKNSAVVFTTRFVDVC-GG-MEAR 210 (800)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~--~~~~~~~~~---~~~~~~s~iivTtR~~~~~-~~-~~~~ 210 (800)
..+... -..+++-++|+|+++ +...+..+. ...++++.+|++|.+.+.. .. ....
T Consensus 83 ~~~~~~------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 83 EEVNKK------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHhcC------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 222110 012455567777764 333344332 3335588888888754432 11 2334
Q ss_pred ceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHH
Q 041843 211 RKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIII 263 (800)
Q Consensus 211 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 263 (800)
..+.+.+++.++....+.+...... .+.++.++..++|.|..+...
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 6899999999999998876653211 455778999999998655433
No 68
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.66 E-value=2.1e-06 Score=82.58 Aligned_cols=189 Identities=17% Similarity=0.163 Sum_probs=107.3
Q ss_pred CcccchhHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
.+|+|.++..+++.=++.. +...-.|.++||+|.||||||.-+++.. ...+...-==...++.++ ..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~tsGp~leK~gDl----aaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKITSGPALEKPGDL----AAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEecccccccChhhH----HHHH
Confidence 5799999998888766643 3457799999999999999999999998 222221100001111122 2222
Q ss_pred HHhCCCCCCCCCCCHH----HHHHHHHHHhcCCceEEEEccccchhhhhhcCCcCCCCcEEEEEeCCcccccccC--ccc
Q 041843 138 KKIGLYTDSWKSKSLE----EKAQDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGGME--ARR 211 (800)
Q Consensus 138 ~~l~~~~~~~~~~~~~----~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~s~iivTtR~~~~~~~~~--~~~ 211 (800)
..+.. .+-...+... ..-+.++-.+.+-+.=+++..- ..-..+...+++-.-|=-|||.-.+...+. ...
T Consensus 99 t~Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~g---p~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi 174 (332)
T COG2255 99 TNLEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKG---PAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGI 174 (332)
T ss_pred hcCCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccC---CccceEeccCCCeeEeeeccccccccchhHHhcCC
Confidence 22211 0000000000 0011222223333333333221 112223334555566777999655443332 234
Q ss_pred eEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHH
Q 041843 212 KFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIG 264 (800)
Q Consensus 212 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 264 (800)
+.+++..+.+|-.+++.+.+..-..+.+ ++.+.+|+++..|-|.-..-+-
T Consensus 175 ~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 175 IQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred eeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHH
Confidence 6789999999999999998865554444 7889999999999996544333
No 69
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=9.2e-07 Score=92.27 Aligned_cols=195 Identities=10% Similarity=0.091 Sum_probs=111.6
Q ss_pred CCcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCC-CCCEEEEEEEcCccCHHHHHHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-DFDYVIWVVVSKDLQLEKIQETIGKK 139 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~ 139 (800)
...++|.++..+.+...+..+.-...+.|+|+.|+||||+|..+++....... .+... ............+.+...
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQG 98 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcC
Confidence 45689999999999999988755667999999999999999999988732110 01110 000111111122222221
Q ss_pred -------hCCCC-CC----CCCCCHHHHHHHHHHHh-----cCCceEEEEccccch--hhhhhc---CCcCCCCcE-EEE
Q 041843 140 -------IGLYT-DS----WKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLKKI---GVPLPKNSA-VVF 196 (800)
Q Consensus 140 -------l~~~~-~~----~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~---~~~~~~~s~-iiv 196 (800)
+.... +. .....+++ ++.+.+++ .++.-++|+|+++.. .....+ ....+.+.. |++
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 00000 00 01122333 33444444 356679999999643 222222 222233444 444
Q ss_pred EeCCccccccc-CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHH
Q 041843 197 TTRFVDVCGGM-EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIG 264 (800)
Q Consensus 197 TtR~~~~~~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 264 (800)
|++...+.... .....+.+.+++.++..+++.+...... -.++....+++.++|.|.....+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 54433332211 2346899999999999999987432111 114567899999999998665443
No 70
>PTZ00202 tuzin; Provisional
Probab=98.64 E-value=5.2e-06 Score=85.63 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=99.1
Q ss_pred cCCCCCcccchhHHHHHHHHHhcc-C-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHH
Q 041843 57 ERPTEPTVVGLQSQLEQVWRCLVQ-E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQE 134 (800)
Q Consensus 57 ~~~~~~~~vgr~~~~~~l~~~l~~-~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 134 (800)
-|+..+.|+||++++.++...|.+ + +..+++.|+|++|+|||||++.+.... . + ...+++.. +..+++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l---~--~-~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE---G--M-PAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC---C--c-eEEEECCC---CHHHHHH
Confidence 445567999999999999999864 2 245699999999999999999998765 1 1 12333322 6799999
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHh------cCCceEEEEccccchhhhhhcCC---cC-CC--CcEEEEEeCCcc
Q 041843 135 TIGKKIGLYTDSWKSKSLEEKAQDIFKTL------SKKKFALLLDDLWERVDLKKIGV---PL-PK--NSAVVFTTRFVD 202 (800)
Q Consensus 135 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l------~~~~~LlvlDdv~~~~~~~~~~~---~~-~~--~s~iivTtR~~~ 202 (800)
.++.+++.... ....+..+.+.+.+ ++++.+||+-=-. ...+..... .+ .+ -+.|++----+.
T Consensus 328 ~LL~ALGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lre-g~~l~rvyne~v~la~drr~ch~v~evples 402 (550)
T PTZ00202 328 SVVKALGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVLKLRE-GSSLQRVYNEVVALACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHcCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecC-CCcHHHHHHHHHHHHccchhheeeeeehHhh
Confidence 99999997432 22233334444333 2667777764321 111111100 00 01 355555433222
Q ss_pred cc---cccCccceEEeccCChHHHHHHHHHHh
Q 041843 203 VC---GGMEARRKFKVACLSDEDAWELFREKV 231 (800)
Q Consensus 203 ~~---~~~~~~~~~~l~~L~~~e~~~l~~~~~ 231 (800)
.. ..+..-..|.++.++.++|.++..+..
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 21 112234578999999999999877654
No 71
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.63 E-value=1.2e-06 Score=92.20 Aligned_cols=175 Identities=15% Similarity=0.159 Sum_probs=106.1
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE--cCccCHHHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV--SKDLQLEKIQETIGKK 139 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~ 139 (800)
.+++|+++.++.+..++... ..+.+.|+|+.|+||||+|+.+++.... ..+. ..++.+ +.......+...+...
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~-~~~~~ll~G~~G~GKt~~~~~l~~~l~~--~~~~-~~~i~~~~~~~~~~~~~~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK-NMPHLLFAGPPGTGKTTAALALARELYG--EDWR-ENFLELNASDERGIDVIRNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHcC--Cccc-cceEEeccccccchHHHHHHHHHH
Confidence 46899999999999998765 4566899999999999999999988621 1121 122222 2222222111111111
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh-----hhhhcCCcCCCCcEEEEEeCCcc-ccccc-Cccce
Q 041843 140 IGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV-----DLKKIGVPLPKNSAVVFTTRFVD-VCGGM-EARRK 212 (800)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----~~~~~~~~~~~~s~iivTtR~~~-~~~~~-~~~~~ 212 (800)
..... .....+-++|+|+++... .+..+....+..+.+|+++.... +.... .....
T Consensus 93 ~~~~~-----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 93 ARTAP-----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HhcCC-----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 10000 001235689999985431 23333333344567777664322 21111 23347
Q ss_pred EEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHH
Q 041843 213 FKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLAL 260 (800)
Q Consensus 213 ~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 260 (800)
+++.+++.++....+...+.......+ ++....+++.++|.+.-+
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 899999999999999888765443333 678899999999988653
No 72
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.2e-06 Score=95.94 Aligned_cols=180 Identities=18% Similarity=0.168 Sum_probs=109.7
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCEEEEEEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP------------------TDFDYVIWVVV 123 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 123 (800)
.+++|.+..++.+...+..+.-...+.++|+.|+||||+|+.+++...... +.|..+++++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 568999999999999998764456688999999999999999998652100 01222333332
Q ss_pred cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCceEEEEccccch--hhhhhc---CCcCCCCcEEEEE
Q 041843 124 SKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFK-TLSKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFT 197 (800)
Q Consensus 124 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~--~~~~~~---~~~~~~~s~iivT 197 (800)
.....++++ .+..+.+.. -..+++-++|+|++... .....+ ....++...+|++
T Consensus 96 as~~gvd~i--------------------r~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 96 ASRTGVEET--------------------KEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ccccCHHHH--------------------HHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 222222111 111111111 12456779999999643 223333 2333445655554
Q ss_pred eCC-cccccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChh-HHHHHH
Q 041843 198 TRF-VDVCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPL-ALIIIG 264 (800)
Q Consensus 198 tR~-~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 264 (800)
|.+ ..+... ......+++.+++.++..+.+.+.+.......+ ++....|++.++|.+. |+..+-
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e---~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD---EQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 443 333322 234578999999999999888876654332222 6778899999999764 444443
No 73
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=7.7e-07 Score=98.41 Aligned_cols=178 Identities=13% Similarity=0.153 Sum_probs=108.4
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCEEEEEEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP------------------TDFDYVIWVVV 123 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 123 (800)
.++||.+..++.|..++..+.-...+.++|+.|+||||+|+.+++...... +.|..++.++.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEida 95 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDA 95 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEec
Confidence 578999999999999998874456789999999999999999988751100 00111122221
Q ss_pred cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCceEEEEccccchh--hhhhcC---CcCCCCcEEEEE
Q 041843 124 SKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFK-TLSKKKFALLLDDLWERV--DLKKIG---VPLPKNSAVVFT 197 (800)
Q Consensus 124 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~--~~~~~~---~~~~~~s~iivT 197 (800)
.....+.. ..+.+..... -..+++-++|+|++.... ....+. ...+...++|++
T Consensus 96 As~~gVd~--------------------IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILa 155 (709)
T PRK08691 96 ASNTGIDN--------------------IREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (709)
T ss_pred cccCCHHH--------------------HHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 11111111 1111111110 023566799999996432 222222 222346667776
Q ss_pred eCCcc-cccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHH
Q 041843 198 TRFVD-VCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALII 262 (800)
Q Consensus 198 tR~~~-~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 262 (800)
|.+.. +... .+....+.+.+++.++..+.+.+.+.......+ .+....|++.++|.+.-+..
T Consensus 156 Ttd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 156 TTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred eCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHHH
Confidence 65433 2211 123356788899999999999888765543333 67889999999998854433
No 74
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=3.4e-06 Score=88.60 Aligned_cols=196 Identities=12% Similarity=0.046 Sum_probs=110.8
Q ss_pred CCcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCC-CCCE-EEEEEEcCccCHHHHHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-DFDY-VIWVVVSKDLQLEKIQETIGK 138 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-~f~~-~~wv~~~~~~~~~~~~~~i~~ 138 (800)
..+++|.++..+.+.+.+..+.-...+.++|+.|+||+|+|..+++....... .... ..-...-.....-..-+.+..
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~ 97 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAA 97 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHc
Confidence 35789999999999999988744567999999999999999999888632111 0000 000000000000001111110
Q ss_pred HhC-----CC---CCCC----CCCCHHHHHHHHHHHhc-----CCceEEEEccccch--hhhhhc---CCcCCCCcEEEE
Q 041843 139 KIG-----LY---TDSW----KSKSLEEKAQDIFKTLS-----KKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVF 196 (800)
Q Consensus 139 ~l~-----~~---~~~~----~~~~~~~~~~~l~~~l~-----~~~~LlvlDdv~~~--~~~~~~---~~~~~~~s~iiv 196 (800)
.-. +. .+.. ....+++ ++.+.+.+. +.+.++|+|+++.. .....+ ....+.+..+|+
T Consensus 98 ~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL 176 (365)
T PRK07471 98 GAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLL 176 (365)
T ss_pred cCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 000 00 0000 1112233 444445443 56679999999643 222222 223334666667
Q ss_pred EeCCccc-cc-ccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHH
Q 041843 197 TTRFVDV-CG-GMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIG 264 (800)
Q Consensus 197 TtR~~~~-~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 264 (800)
+|.+... .. .......+.+.+++.+++.+++.+...... .+....+++.++|.|.....+.
T Consensus 177 ~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 177 VSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 6665433 21 123456899999999999999987643211 2334788999999998665543
No 75
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.60 E-value=4.4e-07 Score=83.50 Aligned_cols=120 Identities=23% Similarity=0.159 Sum_probs=73.4
Q ss_pred cchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCC
Q 041843 65 VGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYT 144 (800)
Q Consensus 65 vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 144 (800)
+|++.++.++...+... ..+.+.|+|++|+|||++|+++++... .....++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~-~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELP-PPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 47889999999988764 457899999999999999999999872 333456676665433322221111100
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCceEEEEccccch-----hhhhhcCCcC------CCCcEEEEEeCCcc
Q 041843 145 DSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER-----VDLKKIGVPL------PKNSAVVFTTRFVD 202 (800)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----~~~~~~~~~~------~~~s~iivTtR~~~ 202 (800)
............++.++|+||++.. ..+....... ..+..||+||....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999842 2222221221 34678888887543
No 76
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.59 E-value=1.3e-07 Score=90.84 Aligned_cols=46 Identities=28% Similarity=0.436 Sum_probs=33.3
Q ss_pred cccchhHHHHHHHHHh--ccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 63 TVVGLQSQLEQVWRCL--VQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l--~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.||||+++++++...+ ......+.+.|+|++|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3899999999999999 334567999999999999999999999988
No 77
>PRK05642 DNA replication initiation factor; Validated
Probab=98.58 E-value=1e-06 Score=87.20 Aligned_cols=149 Identities=15% Similarity=0.209 Sum_probs=90.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
...+.|+|+.|+|||.|++++++... .....++|++... +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR--------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh--------------------hHHHHHhh
Confidence 36789999999999999999998762 2235567776532 1110 01223333
Q ss_pred cCCceEEEEccccch---hhhhh-c---CCc-CCCCcEEEEEeCCccc-cc--------ccCccceEEeccCChHHHHHH
Q 041843 164 SKKKFALLLDDLWER---VDLKK-I---GVP-LPKNSAVVFTTRFVDV-CG--------GMEARRKFKVACLSDEDAWEL 226 (800)
Q Consensus 164 ~~~~~LlvlDdv~~~---~~~~~-~---~~~-~~~~s~iivTtR~~~~-~~--------~~~~~~~~~l~~L~~~e~~~l 226 (800)
.+-. +||+||+... ..++. + ... ...|..+|+|++.... .. .+....++.+++++.++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3333 6788999522 22222 1 111 1237788998874322 11 122336789999999999999
Q ss_pred HHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHH
Q 041843 227 FREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGR 265 (800)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 265 (800)
++.++.......+ +++..-+++++.|..-.+..+-.
T Consensus 175 l~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 175 LQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHH
Confidence 9866644332233 67888888888877655544433
No 78
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=2.5e-06 Score=92.68 Aligned_cols=183 Identities=19% Similarity=0.204 Sum_probs=107.1
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCC------------------CCCEEEEEEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT------------------DFDYVIWVVV 123 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~ 123 (800)
.++||.+...+.+...+..+.-.+.+.++|++|+||||+|+.+++....... ....+..++.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 5789999998888888877633466899999999999999999887621100 0111222222
Q ss_pred cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hhhhhcCCc---CCCCcEEEEEe
Q 041843 124 SKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTT 198 (800)
Q Consensus 124 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~~~~---~~~~s~iivTt 198 (800)
....+...+. .+...... .-..+++-++|+|++... ...+.+... .+....+|++|
T Consensus 94 a~~~gid~iR-~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilat 154 (472)
T PRK14962 94 ASNRGIDEIR-KIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLAT 154 (472)
T ss_pred cccCCHHHHH-HHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 2222222111 11111110 012356679999998643 223333222 22244444444
Q ss_pred CC-cccccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCC-hhHHHHHHHH
Q 041843 199 RF-VDVCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGL-PLALIIIGRA 266 (800)
Q Consensus 199 R~-~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~~ 266 (800)
.+ ..+... ......+.+.+++.++....+.+.+.......+ +++...|++.++|. +.++..+-.+
T Consensus 155 tn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 155 TNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred CChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 43 222221 123468899999999999999888754432233 67788899988654 5666666543
No 79
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=1.1e-06 Score=96.21 Aligned_cols=192 Identities=14% Similarity=0.166 Sum_probs=107.0
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
.+++|++..++.+.+++..+.-.+.+.++|+.|+||||+|+.+++.... .. |... ...+.-...+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C-~~------~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC-LN------PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-CC------CCCC-CCCcccHHHHHHHcCCC
Confidence 5789999999999999987645568999999999999999999988621 11 1000 00011111111111000
Q ss_pred CC---CCCCCCCCHHHHHHHHHHH-----hcCCceEEEEccccch--hhhhhcCC---cCCCCcEEEEEeC-Ccccccc-
Q 041843 142 LY---TDSWKSKSLEEKAQDIFKT-----LSKKKFALLLDDLWER--VDLKKIGV---PLPKNSAVVFTTR-FVDVCGG- 206 (800)
Q Consensus 142 ~~---~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~~~~~~~---~~~~~s~iivTtR-~~~~~~~- 206 (800)
.. .+.......++. +.+.+. ..+++-++|+|+++.. .....+.. ..+....+|++|. ...+...
T Consensus 88 ~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 88 VDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH
Confidence 00 000000111211 111111 1234457999998643 33333322 2233555555553 3233211
Q ss_pred cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChh-HHHHHHH
Q 041843 207 MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPL-ALIIIGR 265 (800)
Q Consensus 207 ~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 265 (800)
......+++.+++.++....+...+.......+ .+.+..+++.++|.+. |+..+-.
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 233468899999999999999887754432222 6778899999999764 4444443
No 80
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=2.2e-06 Score=93.32 Aligned_cols=191 Identities=15% Similarity=0.147 Sum_probs=107.9
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCE-EEEEEEcCccCHHHHHHHHHHHh
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDY-VIWVVVSKDLQLEKIQETIGKKI 140 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l 140 (800)
.+++|.+..++.+...+..+.-.+.+.++|+.|+||||+|+.+++..... ..... .-+..+... ..-..+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~-~~~~~~~~~~~C~~C----~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS-ALITENTTIKTCEQC----TNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-cccccCcCcCCCCCC----hHHHHHhcCC
Confidence 46899999999999888877445789999999999999999999886211 10000 000000000 0000000000
Q ss_pred CCC---CCCCCCCCHHHHHHHHHH----HhcCCceEEEEccccch--hhhhhcCCc---CCCCcEEEE-EeCCccccccc
Q 041843 141 GLY---TDSWKSKSLEEKAQDIFK----TLSKKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVF-TTRFVDVCGGM 207 (800)
Q Consensus 141 ~~~---~~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDdv~~~--~~~~~~~~~---~~~~s~iiv-TtR~~~~~~~~ 207 (800)
... .+.......++....+.. -+.+++-++|+|+++.. ..+..+... .+....+|+ ||+...+...+
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 000 000011122222211111 12456779999999753 334444322 233555554 44443433222
Q ss_pred -CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHH
Q 041843 208 -EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLAL 260 (800)
Q Consensus 208 -~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 260 (800)
.....+++.+++.++..+.+.+.+.......+ .+....|++.++|.+.-+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 23457899999999999999988865443323 677888999999987443
No 81
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.56 E-value=2.9e-06 Score=90.77 Aligned_cols=180 Identities=14% Similarity=0.167 Sum_probs=109.2
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC-C------------------CCCEEEEEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP-T------------------DFDYVIWVV 122 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~------------------~f~~~~wv~ 122 (800)
.+++|.++.++.+.+++..+.-.+.+.++|+.|+||||+|+.++....... . +++ +++++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEee
Confidence 568999999999999998764456789999999999999999988762110 0 122 22332
Q ss_pred EcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hhhhhcC---CcCCCCcEEEEE
Q 041843 123 VSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VDLKKIG---VPLPKNSAVVFT 197 (800)
Q Consensus 123 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~~---~~~~~~s~iivT 197 (800)
........+ .+++...+... -..+++-++|+|+++.. .....+. ...+....+|++
T Consensus 93 ~~~~~~~~~-~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 93 AASNNGVDD-IREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred ccccCCHHH-HHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 221111111 11222211110 01245568999998543 2233332 222346666667
Q ss_pred eCCcc-cccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHH
Q 041843 198 TRFVD-VCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIG 264 (800)
Q Consensus 198 tR~~~-~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 264 (800)
|.+.. +... ......+++.+++.++..+++..++.......+ ++.+..+++.++|.|..+....
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 65433 2111 123357889999999999999887754432222 6788899999999986655443
No 82
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.5e-06 Score=92.49 Aligned_cols=190 Identities=13% Similarity=0.124 Sum_probs=108.2
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
.+++|.+..+..|..++..+.-...+.++|+.|+||||+|+.+++..... ..... ..+.....-..+.......+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~~---~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIGN---EPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccCc---cccCCCcHHHHHHccCCccce
Confidence 56899999999999998887334568999999999999999999887211 10000 001111111111111000000
Q ss_pred CCCCCCCCCCHH---HHHHHHHH-HhcCCceEEEEccccch--hhhhhcCCcC---CCCcEEEEEeC-Ccccccc-cCcc
Q 041843 142 LYTDSWKSKSLE---EKAQDIFK-TLSKKKFALLLDDLWER--VDLKKIGVPL---PKNSAVVFTTR-FVDVCGG-MEAR 210 (800)
Q Consensus 142 ~~~~~~~~~~~~---~~~~~l~~-~l~~~~~LlvlDdv~~~--~~~~~~~~~~---~~~s~iivTtR-~~~~~~~-~~~~ 210 (800)
. .+.......+ +..+.+.. -..++.-++|+|++... ..+..+...+ +....+|++|. ...+... ....
T Consensus 94 E-Idaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 94 E-IDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred e-echhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 0 0000011111 11222221 12456779999999643 3444443332 22455454444 3333222 2334
Q ss_pred ceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhH
Q 041843 211 RKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLA 259 (800)
Q Consensus 211 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (800)
..|.+.+++.++..+.+.+.+.......+ +++...|++.++|.+.-
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRD 218 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHH
Confidence 67999999999999999888755443333 67889999999999843
No 83
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=1.3e-06 Score=97.12 Aligned_cols=188 Identities=15% Similarity=0.144 Sum_probs=108.4
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHh-
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKI- 140 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l- 140 (800)
.++||.+..++.|...+..+.-...+.++|+.|+||||+|+.+++..... ..+.. .+...-..-+.|...-
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~-~~~~~-------~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE-TGITA-------TPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc-cCCCC-------CCCCCCHHHHHHHcCCC
Confidence 57899999999999999887334557899999999999999998886211 10000 0000001111111000
Q ss_pred ----CCCCCCCCCCCHHHHHHHHHHH-----hcCCceEEEEccccch--hhhhhcC---CcCCCCcEEEEEeCC-ccccc
Q 041843 141 ----GLYTDSWKSKSLEEKAQDIFKT-----LSKKKFALLLDDLWER--VDLKKIG---VPLPKNSAVVFTTRF-VDVCG 205 (800)
Q Consensus 141 ----~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~~~~~~---~~~~~~s~iivTtR~-~~~~~ 205 (800)
.+... .....++. +.+.+. ..++.-++|+|++... .....+. ...+...++|++|.+ ..+..
T Consensus 88 ~D~ieidaa--s~~~Vddi-R~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 88 VDLIEIDAA--SRTKVEDT-RELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCceeeccc--ccCCHHHH-HHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 00000 00112221 112121 2467779999999643 3333332 222345555555544 33332
Q ss_pred c-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHH
Q 041843 206 G-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIII 263 (800)
Q Consensus 206 ~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 263 (800)
. ......+.+.+++.++..+.+.+.+.......+ ++....|++.++|.+.-+..+
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e---~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE---PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2 234578999999999999999887644332222 677789999999988644433
No 84
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.56 E-value=1e-06 Score=87.46 Aligned_cols=168 Identities=12% Similarity=0.096 Sum_probs=98.3
Q ss_pred ccc-chhHH-HHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHh
Q 041843 63 TVV-GLQSQ-LEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKI 140 (800)
Q Consensus 63 ~~v-gr~~~-~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 140 (800)
+|+ |.... +..+.++.......+.+.|+|+.|+|||+||+++++... ..-..+.+++..... ..+
T Consensus 19 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~---~~~~~~~~i~~~~~~------~~~---- 85 (227)
T PRK08903 19 NFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS---YGGRNARYLDAASPL------LAF---- 85 (227)
T ss_pred ccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEEehHHhH------HHH----
Confidence 444 55433 444444444333457899999999999999999998762 222344555543211 000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hhhhhcCCcC----CCCc-EEEEEeCCccccc--------
Q 041843 141 GLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VDLKKIGVPL----PKNS-AVVFTTRFVDVCG-------- 205 (800)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~~~~~----~~~s-~iivTtR~~~~~~-------- 205 (800)
... ...-++|+||+... .....+...+ ..+. .+|+|++......
T Consensus 86 --------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 86 --------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred --------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 011 22347889999533 1212221111 1244 4666666433211
Q ss_pred ccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHH
Q 041843 206 GMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAM 267 (800)
Q Consensus 206 ~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 267 (800)
.+.....++++++++++-..++.+.+.......+ ++..+.+++.+.|++..+..+...+
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1122368899999999888887765533332333 6788899999999998877666554
No 85
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.55 E-value=4.3e-08 Score=106.54 Aligned_cols=172 Identities=27% Similarity=0.357 Sum_probs=145.7
Q ss_pred cEEEEcCCCccccCccccccc-cceEEEccccccCCCC-CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 399 GFLVYAGSGLTEAPADVRGWE-MGRRLSLMKNSIGNLP-TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
..+...+..+.++++...... +++.|++.+|.+..+| ....+++|+.|++++|++..+++. ....+.|+.|++++|
T Consensus 119 ~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N- 196 (394)
T COG4886 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGN- 196 (394)
T ss_pred eEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh-hhhhhhhhheeccCC-
Confidence 345566677888877777774 9999999999999996 789999999999999999999875 348899999999999
Q ss_pred ccccccccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCccc
Q 041843 477 MLRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFS 556 (800)
Q Consensus 477 ~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~ 556 (800)
.+..+|..+..+.+|++|.+++|.+...+..+.++.++..|.+.++. +..++.. ++++++|+.|+++.|.+..
T Consensus 197 ~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~~----- 269 (394)
T COG4886 197 KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQISS----- 269 (394)
T ss_pred ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceeccccccccc-----
Confidence 89999998888888999999999888888899999999999988664 4554554 7899999999999998864
Q ss_pred ccccchHHHhhCCCCCcEEEEEeccchhH
Q 041843 557 SRYVNVAEELLGLKYLEVLEITFRSFEAY 585 (800)
Q Consensus 557 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 585 (800)
. ..++.+.+|+.|+++++.+...
T Consensus 270 -----i-~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 270 -----I-SSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred -----c-ccccccCccCEEeccCcccccc
Confidence 2 2288899999999998876543
No 86
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=7e-08 Score=72.95 Aligned_cols=60 Identities=35% Similarity=0.566 Sum_probs=42.4
Q ss_pred CcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccc-ccccccccccEEeccCCCC
Q 041843 441 PHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLP-TGISKLVSLQLLDISYTSV 501 (800)
Q Consensus 441 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~i 501 (800)
++|++|++++|.++.+++..|..+++|++|++++| .+..+| ..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46777777777777777777777777777777777 455554 4567777777777777754
No 87
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.54 E-value=1.1e-06 Score=85.72 Aligned_cols=179 Identities=17% Similarity=0.159 Sum_probs=100.8
Q ss_pred cccch-hHHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHH
Q 041843 63 TVVGL-QSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKK 139 (800)
Q Consensus 63 ~~vgr-~~~~~~l~~~l~~~--~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 139 (800)
.++|- .+..-.....+.++ .....+.|+|+.|+|||.|.+++++...+. ..-..+++++. .++...+...
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~-~~~~~v~y~~~------~~f~~~~~~~ 82 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ-HPGKRVVYLSA------EEFIREFADA 82 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH-CTTS-EEEEEH------HHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc-cccccceeecH------HHHHHHHHHH
Confidence 34564 23333333444332 234578999999999999999999987321 22334666654 4555555555
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch---hhhhh-c---CCc-CCCCcEEEEEeCCccc-cc-----
Q 041843 140 IGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER---VDLKK-I---GVP-LPKNSAVVFTTRFVDV-CG----- 205 (800)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---~~~~~-~---~~~-~~~~s~iivTtR~~~~-~~----- 205 (800)
+.. .. ...+++.+.+ -=+|++||++.. ..+.. + ... ...|.+||+|++.... ..
T Consensus 83 ~~~-------~~----~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~ 150 (219)
T PF00308_consen 83 LRD-------GE----IEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPD 150 (219)
T ss_dssp HHT-------TS----HHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HH
T ss_pred HHc-------cc----chhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChh
Confidence 432 11 2334455553 347889999643 11221 1 111 1237899999964322 22
Q ss_pred ---ccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHH
Q 041843 206 ---GMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIII 263 (800)
Q Consensus 206 ---~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 263 (800)
.+.....+++++.+.++-.+++.+++.......+ ++++.-+++++.+..-.+..+
T Consensus 151 L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 151 LRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHH
T ss_pred hhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHHHH
Confidence 2234468999999999999999999866554444 777788888777665544433
No 88
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.5e-06 Score=95.36 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=109.7
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCEEEEEEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP------------------TDFDYVIWVVV 123 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 123 (800)
.++||-+..++.+.+++..+.-...+.++|+.|+||||+|+.+++..-... +.+.-++.++.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 568999999999999998874456689999999999999999988762110 11222333333
Q ss_pred cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hhhhhc---CCcCCCCcEEEEEe
Q 041843 124 SKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTT 198 (800)
Q Consensus 124 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~---~~~~~~~s~iivTt 198 (800)
.....++++ +++...+... -..++.-++|+|++... .....+ ....++..++|++|
T Consensus 96 as~~~v~~i-R~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 96 ASRTKVEDT-RELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred cccCCHHHH-HHHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 322233322 2222222110 11356678999999643 233332 23334567666665
Q ss_pred CCc-ccccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHH
Q 041843 199 RFV-DVCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALI 261 (800)
Q Consensus 199 R~~-~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 261 (800)
.+. .+... ......+++.+++.++..+.+.+.+.......+ .+....|++.++|.+.-+.
T Consensus 157 td~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 157 TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDAL 218 (509)
T ss_pred CChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHH
Confidence 443 22211 123457899999999998888777654443222 5677889999999885443
No 89
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.53 E-value=1.7e-07 Score=84.18 Aligned_cols=116 Identities=21% Similarity=0.257 Sum_probs=78.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC--CCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDN--PTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIF 160 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 160 (800)
+.+++.|+|++|+|||++++.+++..... ...-..++|+.+....+...+...++..++..... ..+..+..+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 35789999999999999999999886210 00145677999988889999999999999865432 456777778888
Q ss_pred HHhcCCce-EEEEccccch---hhhhhcCCcC-CCCcEEEEEeCC
Q 041843 161 KTLSKKKF-ALLLDDLWER---VDLKKIGVPL-PKNSAVVFTTRF 200 (800)
Q Consensus 161 ~~l~~~~~-LlvlDdv~~~---~~~~~~~~~~-~~~s~iivTtR~ 200 (800)
+.+...+. +||+|+++.. ..++.+.... ..+.+||+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 88877665 9999999654 2233331111 336677776663
No 90
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=2.6e-06 Score=94.71 Aligned_cols=193 Identities=14% Similarity=0.141 Sum_probs=108.6
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCCEEEEEEEcCccCHHHHHHHHHHHh
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP-TDFDYVIWVVVSKDLQLEKIQETIGKKI 140 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l 140 (800)
.++||-+..++.|.+++..+.-...+.++|+.|+||||+|+.+++..-... ......-. ...+.-..-+.|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 578999999999999998874456789999999999999999987762110 00000000 0001111111110000
Q ss_pred CC---CCCCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccch--hhhhhcCCc---CCCCcEEEEEeCC-ccccc-
Q 041843 141 GL---YTDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTTRF-VDVCG- 205 (800)
Q Consensus 141 ~~---~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~~~---~~~~s~iivTtR~-~~~~~- 205 (800)
.. ..+.......++.. .+.+.. .++.-++|||+++.. ..+..+... .+...++|++|.+ ..+..
T Consensus 92 h~D~~eldaas~~~Vd~iR-eli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQ-QLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCceeecCcccccCHHHHH-HHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 00 00000111222221 122221 245568999999643 333333332 2345566655543 33321
Q ss_pred ccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHH
Q 041843 206 GMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALII 262 (800)
Q Consensus 206 ~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 262 (800)
.......+++++++.++..+.+.+.+.......+ .+....|++.++|.+.-+..
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 1234568999999999999999888755443333 67789999999998754443
No 91
>PRK09087 hypothetical protein; Validated
Probab=98.52 E-value=1.5e-06 Score=85.13 Aligned_cols=140 Identities=14% Similarity=0.151 Sum_probs=88.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT 162 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 162 (800)
..+.+.|||+.|+|||+|++.++... . ..+++.. .+..++...+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~---~-----~~~i~~~------~~~~~~~~~~---------------------- 86 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS---D-----ALLIHPN------EIGSDAANAA---------------------- 86 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc---C-----CEEecHH------HcchHHHHhh----------------------
Confidence 34679999999999999999998765 1 1133321 1111111111
Q ss_pred hcCCceEEEEccccch----hhhhhcCCc-CCCCcEEEEEeCCc---------ccccccCccceEEeccCChHHHHHHHH
Q 041843 163 LSKKKFALLLDDLWER----VDLKKIGVP-LPKNSAVVFTTRFV---------DVCGGMEARRKFKVACLSDEDAWELFR 228 (800)
Q Consensus 163 l~~~~~LlvlDdv~~~----~~~~~~~~~-~~~~s~iivTtR~~---------~~~~~~~~~~~~~l~~L~~~e~~~l~~ 228 (800)
.+ -+|++||+... ..+-.+... ...|..||+|++.. .....+.....+++++++.++-.++++
T Consensus 87 -~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 87 -AE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred -hc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 11 27888998532 222222122 22377899988742 222333455789999999999999999
Q ss_pred HHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHH
Q 041843 229 EKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIG 264 (800)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 264 (800)
+++.......+ +++..-|++++.|..-++..+-
T Consensus 164 ~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 164 KLFADRQLYVD---PHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHH
Confidence 98865443333 7888899999888776665433
No 92
>PLN03150 hypothetical protein; Provisional
Probab=98.51 E-value=2e-07 Score=106.16 Aligned_cols=105 Identities=26% Similarity=0.381 Sum_probs=60.0
Q ss_pred ceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccCCCCcc-cchhhhcCccCceecccc
Q 041843 443 LLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTG-LPEGLKALVNLKCLNLDW 521 (800)
Q Consensus 443 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~l~~ 521 (800)
++.|+|++|.+.+..+..+..+++|+.|+|++|.....+|..++.+.+|++|+|++|.+.. +|..+++|++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 5556666666554444445666666666666663334566666666666666666666653 566666666666666666
Q ss_pred cccccccchhhhCCCCCCcEEEeeec
Q 041843 522 ADELVEVPQQLLSNFSRLRVLRMFAT 547 (800)
Q Consensus 522 ~~~l~~lp~~~~~~L~~L~~L~l~~~ 547 (800)
|.....+|..+-..+.++..+++.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 65555555542222234555555544
No 93
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=3.5e-06 Score=90.99 Aligned_cols=177 Identities=15% Similarity=0.156 Sum_probs=110.4
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccC------------------CCCCCEEEEEEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN------------------PTDFDYVIWVVV 123 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~------------------~~~f~~~~wv~~ 123 (800)
.++||.+..++.+.+.+..+.-.+.+.++|+.|+||||+|+.++...... .+...-++.++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 57899999999999888877445689999999999999999998753100 011223344444
Q ss_pred cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hhhhhc---CCcCCCCcEEEEEe
Q 041843 124 SKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTT 198 (800)
Q Consensus 124 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~---~~~~~~~s~iivTt 198 (800)
+...++.++. ++....... -..++.-++|+|++... .....+ ....++..++|++|
T Consensus 93 as~~~vddIR-~Iie~~~~~------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 93 ASNTSVDDIK-VILENSCYL------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred ccCCCHHHHH-HHHHHHHhc------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3333333221 222221100 01356678999998533 223333 22234466666655
Q ss_pred CC-cccccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHH
Q 041843 199 RF-VDVCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLAL 260 (800)
Q Consensus 199 R~-~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 260 (800)
.. ..+... ......+.+.+++.++..+.+.+.+.......+ ++....|++.++|.+..+
T Consensus 154 te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 154 TEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNA 214 (491)
T ss_pred CChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 43 333221 234467899999999999999988765543333 677889999999987543
No 94
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=2.9e-06 Score=93.87 Aligned_cols=180 Identities=15% Similarity=0.149 Sum_probs=108.1
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCEEEEEEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP------------------TDFDYVIWVVV 123 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 123 (800)
.+++|.+..++.+..++..+.-...+.++|+.|+||||+|+.++....... +.|..+++++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 578999999999999998764455678999999999999999988762110 01112222222
Q ss_pred cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh--hhhhc---CCcCCCCcEEEEEe
Q 041843 124 SKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV--DLKKI---GVPLPKNSAVVFTT 198 (800)
Q Consensus 124 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~~---~~~~~~~s~iivTt 198 (800)
.......++ +++...+... -..+++-++|+|+++... ....+ ....+....+|++|
T Consensus 96 ~~~~~vd~i-r~l~~~~~~~------------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 96 ASNTQVDAM-RELLDNAQYA------------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cccCCHHHH-HHHHHHHhhC------------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 211111111 1121111100 013566799999997442 23322 22233456666655
Q ss_pred CCc-ccccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChh-HHHHH
Q 041843 199 RFV-DVCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPL-ALIII 263 (800)
Q Consensus 199 R~~-~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 263 (800)
.++ .+... ......+++.+++.++..+.+.+.+.......+ ++....|++.++|.+. |+..+
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~---~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD---ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 433 33221 123467899999999999988887754432222 6677899999999875 44443
No 95
>PF13173 AAA_14: AAA domain
Probab=98.49 E-value=4.3e-07 Score=80.78 Aligned_cols=117 Identities=18% Similarity=0.164 Sum_probs=75.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
.+++.|.|+.|+||||++++++++. . ....+++++............ + ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~~~------------------~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLADP------------------D-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHhhh------------------h-hHHHHHHhh
Confidence 3789999999999999999999887 2 445567777654332111000 0 222333333
Q ss_pred cCCceEEEEccccchhhhhhcCCcCC---CCcEEEEEeCCcccccc------cCccceEEeccCChHHH
Q 041843 164 SKKKFALLLDDLWERVDLKKIGVPLP---KNSAVVFTTRFVDVCGG------MEARRKFKVACLSDEDA 223 (800)
Q Consensus 164 ~~~~~LlvlDdv~~~~~~~~~~~~~~---~~s~iivTtR~~~~~~~------~~~~~~~~l~~L~~~e~ 223 (800)
..++.+++||++....+|......+. ...+|++|+........ .+....+++.||+.+|-
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 44778999999987766665533332 25799999986554321 13345789999998773
No 96
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=3.8e-06 Score=93.61 Aligned_cols=195 Identities=13% Similarity=0.142 Sum_probs=110.2
Q ss_pred CCcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-EEEEEEEcCccCHHHHHHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-YVIWVVVSKDLQLEKIQETIGKK 139 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~ 139 (800)
-.+++|.+..++.+.+++..+.-...+.++|+.|+||||+|+.+++........-. ...+-.+ ..-.--+.|...
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c----g~c~~C~~i~~g 98 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC----GVGEHCQAIMEG 98 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC----cccHHHHHHhcC
Confidence 35689999999999999988745668999999999999999999987621110000 0000000 000000111110
Q ss_pred hCCC---CCCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccch--hhhhhcC---CcCCCCcEEEEEe-CCccccc
Q 041843 140 IGLY---TDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLKKIG---VPLPKNSAVVFTT-RFVDVCG 205 (800)
Q Consensus 140 l~~~---~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~---~~~~~~s~iivTt-R~~~~~~ 205 (800)
-... .+.......++.. .+.+.+ .+++-++|+|++... ...+.+. ...++.+.+|++| ....+..
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 0000 0000111222211 222222 345568999998643 2333332 2234466665555 3333322
Q ss_pred cc-CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHH
Q 041843 206 GM-EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIII 263 (800)
Q Consensus 206 ~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 263 (800)
.+ .....+++.+++.++....+.+.+.......+ .+....|++.++|.+.-+...
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 21 23468899999999999999888755443333 678899999999998655433
No 97
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=1.1e-05 Score=89.17 Aligned_cols=194 Identities=14% Similarity=0.189 Sum_probs=110.6
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
.+++|.+..++.|.+++..+.-...+.++|+.|+||||+|+.+++.... ...... ...+.-..-+.+.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C-~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC-ETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc-cCCCCC-------CCCcccHHHHHHhcCCC
Confidence 5689999999999998887644678889999999999999999988721 110000 00000001111110000
Q ss_pred CC---CCCCCCCCHHHHHHHHHHH-----hcCCceEEEEccccch--hhhhhcCCcC---CCCcEEEEEeCC-cccccc-
Q 041843 142 LY---TDSWKSKSLEEKAQDIFKT-----LSKKKFALLLDDLWER--VDLKKIGVPL---PKNSAVVFTTRF-VDVCGG- 206 (800)
Q Consensus 142 ~~---~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~~~~~~~~~---~~~s~iivTtR~-~~~~~~- 206 (800)
.. .+.......++ ++.+.+. ..+++-++|+|+++.. .....+...+ +....+|++|.. ..+...
T Consensus 88 pDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 00 00000011111 1112222 2356679999999643 3333332222 235555555543 333222
Q ss_pred cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh-hHHHHHHHHH
Q 041843 207 MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP-LALIIIGRAM 267 (800)
Q Consensus 207 ~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l 267 (800)
......+++.+++.++..+.+...+.......+ .+.+..|++.++|.+ .|+..+...+
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 123457899999999999999887654432233 678899999999965 6777665544
No 98
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=6.9e-06 Score=94.78 Aligned_cols=177 Identities=15% Similarity=0.133 Sum_probs=107.4
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCC--------------------CCCEEEEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT--------------------DFDYVIWV 121 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~--------------------~f~~~~wv 121 (800)
.++||.+..++.|..++..+.-...+.++|+.|+||||+|+.+++....... ....++++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ei 94 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEI 94 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEe
Confidence 4689999999999999988744466899999999999999999888721111 00011222
Q ss_pred EEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hh---hhhcCCcCCCCcEEEE
Q 041843 122 VVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VD---LKKIGVPLPKNSAVVF 196 (800)
Q Consensus 122 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~---~~~~~~~~~~~s~iiv 196 (800)
+......++++. ++...+ ...-..++.-++|||+++.. .. +.++....+..+.+|+
T Consensus 95 daas~~~Vd~iR-~l~~~~------------------~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl 155 (824)
T PRK07764 95 DAASHGGVDDAR-ELRERA------------------FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIF 155 (824)
T ss_pred cccccCCHHHHH-HHHHHH------------------HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEE
Confidence 211111111111 111110 01113456678999999643 23 3333333445666665
Q ss_pred EeCC-cccccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHH
Q 041843 197 TTRF-VDVCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLAL 260 (800)
Q Consensus 197 TtR~-~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 260 (800)
+|.+ ..+... ......|.+..++.++..+++.+.+.......+ .+....|++.++|.+..+
T Consensus 156 ~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 156 ATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred EeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 5543 333322 234568999999999999999887654443222 567788999999988433
No 99
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=6e-06 Score=92.51 Aligned_cols=189 Identities=14% Similarity=0.176 Sum_probs=106.1
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
.+++|.+..++.+..++..+.-.+.+.++|+.|+||||+|+.++...-....... +-.+... .........
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~---~~pC~~C------~~~~~~~~D 88 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL---LEPCQEC------IENVNNSLD 88 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC---CCchhHH------HHhhcCCCc
Confidence 5689999999999999988745567789999999999999999887621110000 0000000 000000000
Q ss_pred CC-CCCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccch--hhhhhcC---CcCCCCcEEEE-EeCCcccccc-cC
Q 041843 142 LY-TDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLKKIG---VPLPKNSAVVF-TTRFVDVCGG-ME 208 (800)
Q Consensus 142 ~~-~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~---~~~~~~s~iiv-TtR~~~~~~~-~~ 208 (800)
.. .+.......++ ++.+.+.+ .+++-++|+|++... ..+..+. ...++...+|+ |++...+... ..
T Consensus 89 vieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~S 167 (725)
T PRK07133 89 IIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILS 167 (725)
T ss_pred EEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHh
Confidence 00 00000011221 22222222 356679999998643 2333332 22233555454 4443333222 23
Q ss_pred ccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChh-HHHHH
Q 041843 209 ARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPL-ALIII 263 (800)
Q Consensus 209 ~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 263 (800)
....+.+.+++.++..+.+...+.......+ .+++..+++.++|.+. |+..+
T Consensus 168 Rcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 168 RVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred hceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 3468999999999999999886644332222 5678899999999775 44433
No 100
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=7.3e-06 Score=86.84 Aligned_cols=170 Identities=15% Similarity=0.105 Sum_probs=103.1
Q ss_pred CcccchhHHHHHHHHHhccCC---------CceEEEEEcCCCCcHHHHHHHHHhhcccCC------------------CC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEP---------AAGIIGLYGMGGVGKTTLLTQINNKFVDNP------------------TD 114 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~---------~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~ 114 (800)
.+++|.+..++.+.+++..+. -.+.+.++|+.|+|||++|+.++....... .+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 468999999999999998753 356788999999999999999988652111 01
Q ss_pred CCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccch--hh---hhhc
Q 041843 115 FDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWER--VD---LKKI 184 (800)
Q Consensus 115 f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~---~~~~ 184 (800)
.+ +.++.... .....++ ++.+.+.. .+++-++|+|+++.. .. +-..
T Consensus 85 pD-~~~i~~~~----------------------~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 85 PD-VRVVAPEG----------------------LSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CC-EEEecccc----------------------ccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 11 11111110 1111222 12222222 245568888999643 22 2222
Q ss_pred CCcCCCCcEEEEEeCCc-ccccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHH
Q 041843 185 GVPLPKNSAVVFTTRFV-DVCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALII 262 (800)
Q Consensus 185 ~~~~~~~s~iivTtR~~-~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 262 (800)
....+++..+|++|.+. .+... ......+.+.+++.++..+.+.+..+. + .+.+..+++.++|.|.....
T Consensus 141 LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 141 VEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARR 212 (394)
T ss_pred hhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHH
Confidence 22334466666666543 33222 233468999999999999988754321 1 46678899999999975544
Q ss_pred H
Q 041843 263 I 263 (800)
Q Consensus 263 ~ 263 (800)
+
T Consensus 213 l 213 (394)
T PRK07940 213 L 213 (394)
T ss_pred H
Confidence 3
No 101
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.41 E-value=2.1e-06 Score=91.54 Aligned_cols=167 Identities=19% Similarity=0.235 Sum_probs=99.2
Q ss_pred cccchhHHHHHHHHHhcc---C---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 63 TVVGLQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~---~---------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
++.|++++++++.+.+.. . ...+-+.|+|++|+|||++|+++++.. ...| +.+.. .
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~----~ 190 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG----S 190 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----H
Confidence 578999999999887632 1 235669999999999999999999987 3333 22211 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEccccchh----------------hhhhcCCc---C--
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-SKKKFALLLDDLWERV----------------DLKKIGVP---L-- 188 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~----------------~~~~~~~~---~-- 188 (800)
.+.... .+ ........+.+.. ...+.+|++|+++... .+..+... +
T Consensus 191 ~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 191 ELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred HHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 111110 00 0111222222222 3467899999986421 11122111 1
Q ss_pred CCCcEEEEEeCCcccc-----cccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 189 PKNSAVVFTTRFVDVC-----GGMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 189 ~~~s~iivTtR~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
..+..||.||...... .....+..+.++..+.++..++|..++.......+ .....+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~----~~~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED----VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc----CCHHHHHHHcCCCC
Confidence 2366788888754332 21123567899999999999999988755442221 12567777887754
No 102
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.41 E-value=4.7e-07 Score=89.38 Aligned_cols=98 Identities=16% Similarity=0.124 Sum_probs=65.0
Q ss_pred HHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc--cCHHHHHHHHHHHhCCCCCCCCCCCH
Q 041843 75 WRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD--LQLEKIQETIGKKIGLYTDSWKSKSL 152 (800)
Q Consensus 75 ~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~ 152 (800)
++.+..=.....++|.|++|+|||||++++++.. .. .+|+.++|+.+... .++.++++.+...+-.... .. ..
T Consensus 7 id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~--~~-~~ 81 (249)
T cd01128 7 VDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF--DE-PP 81 (249)
T ss_pred eeeecccCCCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC--CC-CH
Confidence 3344332355799999999999999999999997 32 38999999997766 7899999998333221110 11 11
Q ss_pred HH-------HHHHHHHH-hcCCceEEEEccccc
Q 041843 153 EE-------KAQDIFKT-LSKKKFALLLDDLWE 177 (800)
Q Consensus 153 ~~-------~~~~l~~~-l~~~~~LlvlDdv~~ 177 (800)
.. ........ -.++++++++|++..
T Consensus 82 ~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 82 ERHVQVAEMVLEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
Confidence 11 11111111 257999999999854
No 103
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2e-08 Score=96.36 Aligned_cols=181 Identities=19% Similarity=0.189 Sum_probs=108.3
Q ss_pred CCcEEEccCccccc--cccccccccccccEEeccCCCCcc-cchhhhcCccCceecccccccccccch-hhhCCCCCCcE
Q 041843 466 CLTVLKMSDNIMLR--QLPTGISKLVSLQLLDISYTSVTG-LPEGLKALVNLKCLNLDWADELVEVPQ-QLLSNFSRLRV 541 (800)
Q Consensus 466 ~L~~L~Ls~~~~~~--~lp~~i~~L~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~ 541 (800)
.|++||||+. .++ .+-.-++.+.+|+.|.|.++++.. +-..+.+-.+|+.|++++|..+.+... -++.+++.|+.
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 5889999887 443 244456778888889999988877 666778888899999998877665432 24678888888
Q ss_pred EEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccc-cccC-cCC
Q 041843 542 LRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESI-GVAD-LAD 619 (800)
Q Consensus 542 L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~-~~~~-l~~ 619 (800)
|++++|...... .. .....++ .+|..|+++++. ..-.. .+.. ...
T Consensus 265 LNlsWc~l~~~~-Vt----v~V~his--e~l~~LNlsG~r--------------------------rnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 265 LNLSWCFLFTEK-VT----VAVAHIS--ETLTQLNLSGYR--------------------------RNLQKSHLSTLVRR 311 (419)
T ss_pred cCchHhhccchh-hh----HHHhhhc--hhhhhhhhhhhH--------------------------hhhhhhHHHHHHHh
Confidence 888888665421 00 1111111 344455554321 10000 0011 234
Q ss_pred cccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCC--ChhhhcCCCCcEEEEecCc
Q 041843 620 LEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKH--LTFLVFAPNLKSISVRDCD 689 (800)
Q Consensus 620 l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~--l~~l~~l~~L~~L~l~~~~ 689 (800)
+++|.+|++++|..++. ..+ .....|+.|++|.++.|..+.- +-.+...|+|.+|++.+|-
T Consensus 312 cp~l~~LDLSD~v~l~~--~~~-------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKN--DCF-------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CCceeeeccccccccCc--hHH-------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 67788888887766552 111 1112467777777777754321 1124566777777777764
No 104
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=9.8e-06 Score=89.84 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=107.7
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCC--------------------CCEEEEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD--------------------FDYVIWV 121 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~--------------------f~~~~wv 121 (800)
.++||.+..++.|..++..+.-...+.++|+.|+||||+|+.++......... ...++.+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dviei 92 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVEL 92 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEe
Confidence 57899999999999999887444567899999999999999999876211100 0011222
Q ss_pred EEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCceEEEEccccch--hhhhhc---CCcCCCCcEEE
Q 041843 122 VVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT-LSKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVV 195 (800)
Q Consensus 122 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~--~~~~~~---~~~~~~~s~ii 195 (800)
+.....++.++ .+..+.+... ..+++-++|+|++... .....+ ....+....+|
T Consensus 93 daas~~gvd~i--------------------Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fI 152 (584)
T PRK14952 93 DAASHGGVDDT--------------------RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFI 152 (584)
T ss_pred ccccccCHHHH--------------------HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEE
Confidence 21111111111 1111111111 1355668999998532 333333 23334456655
Q ss_pred EEeC-Ccccccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChh-HHHHHHH
Q 041843 196 FTTR-FVDVCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPL-ALIIIGR 265 (800)
Q Consensus 196 vTtR-~~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 265 (800)
++|. ...+... ......+++.+++.++..+.+.+.+.......+ .+....|++.++|.+. ++..+-.
T Consensus 153 L~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 153 FATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred EEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5554 3333222 233568999999999999999887754442222 5677889999999874 4444443
No 105
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=5.3e-06 Score=89.17 Aligned_cols=197 Identities=12% Similarity=0.100 Sum_probs=107.5
Q ss_pred CCcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEE-EcCccCHHHHHHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVV-VSKDLQLEKIQETIGKK 139 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~ 139 (800)
-.+++|.+..++.+..++..+.-...+.++|+.|+||||+|..+++.... ...+....|.. ...+.+.-..-+.+...
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c-~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC-QRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC-CCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 35789999999999998887733456889999999999999999988721 11110000000 00000000000111100
Q ss_pred hCCC---CCCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccch--hhhhhcC---CcCCCCcEEEEEe-CCccccc
Q 041843 140 IGLY---TDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLKKIG---VPLPKNSAVVFTT-RFVDVCG 205 (800)
Q Consensus 140 l~~~---~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~---~~~~~~s~iivTt-R~~~~~~ 205 (800)
.... .+.......++.. .+.+.+ .+.+-++|+|++... ..++.+. ...++.+.+|++| +...+..
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 0000 0000111122222 222333 345568899998643 2333332 2233455655555 4333322
Q ss_pred cc-CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHH
Q 041843 206 GM-EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALII 262 (800)
Q Consensus 206 ~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 262 (800)
.+ .....+++.+++.++..+.+...+.......+ .+.+..+++.++|.+--+..
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 21 22357899999999999998887744332222 78899999999998854433
No 106
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.3e-05 Score=85.96 Aligned_cols=177 Identities=15% Similarity=0.181 Sum_probs=104.8
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccC-----CCCCCE-EEEEEEcCccCHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN-----PTDFDY-VIWVVVSKDLQLEKIQET 135 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~-----~~~f~~-~~wv~~~~~~~~~~~~~~ 135 (800)
.+++|.+..++.+.+.+..+.-.+.+.++|+.|+||||+|+.+++..... ...|.. ++.++........++ ..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HH
Confidence 56899999999999999876455689999999999999999998876221 011211 111111111111111 11
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hhhhhcC---CcCCCCcEEEEEeC-Ccccccc-cC
Q 041843 136 IGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VDLKKIG---VPLPKNSAVVFTTR-FVDVCGG-ME 208 (800)
Q Consensus 136 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~~---~~~~~~s~iivTtR-~~~~~~~-~~ 208 (800)
+..++... -..+++-++|+|+++.. ..+..+. ...+....+|++|. ...+... ..
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 11111100 01245568999998643 2233332 22233455555553 3222221 12
Q ss_pred ccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHH
Q 041843 209 ARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLAL 260 (800)
Q Consensus 209 ~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 260 (800)
....+++.+++.++....+...+.......+ .+....+++.++|.+-.+
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 3457899999999999999887755443233 678899999999976533
No 107
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=1.2e-07 Score=93.57 Aligned_cols=242 Identities=19% Similarity=0.184 Sum_probs=132.2
Q ss_pred CCCcceEEEeecCCCcc----cccccccCCCCCcEEEccCc---ccccccccc-------ccccccccEEeccCCCCcc-
Q 041843 439 TCPHLLTLFLNDNPLRT----ITGGFFQSMPCLTVLKMSDN---IMLRQLPTG-------ISKLVSLQLLDISYTSVTG- 503 (800)
Q Consensus 439 ~~~~L~~L~l~~~~l~~----~~~~~~~~l~~L~~L~Ls~~---~~~~~lp~~-------i~~L~~L~~L~L~~~~i~~- 503 (800)
.+..+..+++++|.+.. .....+.+.++|+..++++- +...++|+. +-..++|++||||.|-+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 34455556666665421 11222445556666666654 112233332 2345577777777774432
Q ss_pred ----cchhhhcCccCceecccccccccccchhh-------------hCCCCCCcEEEeeecCCCCCCcccccccchHHHh
Q 041843 504 ----LPEGLKALVNLKCLNLDWADELVEVPQQL-------------LSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEEL 566 (800)
Q Consensus 504 ----lp~~i~~l~~L~~L~l~~~~~l~~lp~~~-------------~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 566 (800)
+-.-+.++..|++|++.+|. ++....+. +++-++|+++....|....... ......+
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga-----~~~A~~~ 181 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA-----TALAEAF 181 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH-----HHHHHHH
Confidence 23345667788888887663 22221111 3445678888887776654211 1345556
Q ss_pred hCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccc
Q 041843 567 LGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQ 646 (800)
Q Consensus 567 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~ 646 (800)
...+.|+.+.+..|.+..-.. ......+..+++|+.|++.+|.....- ...
T Consensus 182 ~~~~~leevr~~qN~I~~eG~-----------------------~al~eal~~~~~LevLdl~DNtft~eg------s~~ 232 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGV-----------------------TALAEALEHCPHLEVLDLRDNTFTLEG------SVA 232 (382)
T ss_pred HhccccceEEEecccccCchh-----------------------HHHHHHHHhCCcceeeecccchhhhHH------HHH
Confidence 677788888887776532110 000134667889999999888654311 111
Q ss_pred cCCCCcCCCCccEEeeecCCCCCCChh-------hhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccE
Q 041843 647 KSRQPCVFRSLEEVTVDNCGNLKHLTF-------LVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQH 719 (800)
Q Consensus 647 l~~~~~~~~~L~~L~l~~c~~l~~l~~-------l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~ 719 (800)
+.....++++|+.|++.+| .+++=.. -...|+|++|.+.+|..-.+-... .......-|.|..
T Consensus 233 LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~---------la~~~~ek~dL~k 302 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA---------LAACMAEKPDLEK 302 (382)
T ss_pred HHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH---------HHHHHhcchhhHH
Confidence 1222235678999999998 5554321 124788888888887633322110 0012233667777
Q ss_pred eeccCc
Q 041843 720 LQLGGL 725 (800)
Q Consensus 720 L~l~~~ 725 (800)
|.+.+|
T Consensus 303 LnLngN 308 (382)
T KOG1909|consen 303 LNLNGN 308 (382)
T ss_pred hcCCcc
Confidence 777765
No 108
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.39 E-value=1.3e-05 Score=76.85 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=90.8
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCCEEEEEEEc-CccCHHHH
Q 041843 73 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP-------------------TDFDYVIWVVVS-KDLQLEKI 132 (800)
Q Consensus 73 ~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~wv~~~-~~~~~~~~ 132 (800)
.+.+.+..+.-...+.++|+.|+||||+|+.++....... .+.+. .++... .....+.+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 4555665553347899999999999999999988862210 11111 122111 11111111
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hhhhh---cCCcCCCCcEEEEEeCCc-ccccc
Q 041843 133 QETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VDLKK---IGVPLPKNSAVVFTTRFV-DVCGG 206 (800)
Q Consensus 133 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~---~~~~~~~~s~iivTtR~~-~~~~~ 206 (800)
+++...+... -..+.+-++|+||++.. ...+. +....++.+.+|++|++. .+...
T Consensus 82 -~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~ 142 (188)
T TIGR00678 82 -RELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPT 142 (188)
T ss_pred -HHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHH
Confidence 1111111100 01345678999998643 22222 223334466677766643 22111
Q ss_pred c-CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhH
Q 041843 207 M-EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLA 259 (800)
Q Consensus 207 ~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (800)
+ .....+.+.+++.++..+.+.+. + . + ++.+..+++.++|.|..
T Consensus 143 i~sr~~~~~~~~~~~~~~~~~l~~~-g---i--~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 143 IRSRCQVLPFPPLSEEALLQWLIRQ-G---I--S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHhhcEEeeCCCCCHHHHHHHHHHc-C---C--C---HHHHHHHHHHcCCCccc
Confidence 1 23468999999999999999877 2 1 1 57789999999998853
No 109
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=1.5e-05 Score=86.98 Aligned_cols=176 Identities=12% Similarity=0.117 Sum_probs=108.9
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCC-C----------------C-CEEEEEEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-D----------------F-DYVIWVVV 123 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-~----------------f-~~~~wv~~ 123 (800)
.+++|-+...+.+...+..+.-.+++.++|+.|+||||+|+.+++......+ . + ..+++++.
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 5689999999999999987744457789999999999999999887621111 0 0 01222221
Q ss_pred cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH----hcCCceEEEEccccch--hhhhhc---CCcCCCCcEE
Q 041843 124 SKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT----LSKKKFALLLDDLWER--VDLKKI---GVPLPKNSAV 194 (800)
Q Consensus 124 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~~~~~---~~~~~~~s~i 194 (800)
.....+ ++..+.+... ..+++-++|+|++... .....+ ....++.+++
T Consensus 94 as~~gI-----------------------d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~F 150 (535)
T PRK08451 94 ASNRGI-----------------------DDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKF 150 (535)
T ss_pred ccccCH-----------------------HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEE
Confidence 111112 2222211110 1245678999999643 223332 2223556777
Q ss_pred EEEeCCcc-ccc-ccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHH
Q 041843 195 VFTTRFVD-VCG-GMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIII 263 (800)
Q Consensus 195 ivTtR~~~-~~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 263 (800)
|++|.+.. +.. .......+++.+++.++..+.+.+.+.......+ ++.+..|++.++|.+.-+..+
T Consensus 151 IL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 151 ILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 77766532 211 1123468899999999999999887755443323 678899999999998554444
No 110
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.1e-05 Score=89.97 Aligned_cols=192 Identities=13% Similarity=0.131 Sum_probs=105.7
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEE-EcCccCHHHHHHHHHHHh
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVV-VSKDLQLEKIQETIGKKI 140 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l 140 (800)
.++||.+..++.+.+++..+.-...+.++|+.|+||||+|+.+++.... ....+...|.. .....+.-..-+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c-~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC-QRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC-CCcCCccccccccCCCCccCHHHHHHhccC
Confidence 5789999999999999887644466889999999999999999888721 11111001110 000001001111111000
Q ss_pred CCC---CCCCCCCCHHHHHHHHHHH-----hcCCceEEEEccccch--hhhhhc---CCcCCCCcEEEEEe-CCcccccc
Q 041843 141 GLY---TDSWKSKSLEEKAQDIFKT-----LSKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTT-RFVDVCGG 206 (800)
Q Consensus 141 ~~~---~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~~~~~---~~~~~~~s~iivTt-R~~~~~~~ 206 (800)
... .+.......++... +.+. ..+.+-++|+|+++.. ...+.+ ....+..+.+|++| +...+...
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 000 00001111222222 2222 2345668899998643 223333 22233355555544 43333222
Q ss_pred -cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChh
Q 041843 207 -MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPL 258 (800)
Q Consensus 207 -~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 258 (800)
......+++.+++.++....+.+.+.......+ .+.+..+++.++|..-
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr 223 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMR 223 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHH
Confidence 234568999999999999888877644332222 6788999999999664
No 111
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.2e-05 Score=87.73 Aligned_cols=176 Identities=13% Similarity=0.145 Sum_probs=105.8
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccC--CC----------------CCCEEEEEEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN--PT----------------DFDYVIWVVV 123 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~--~~----------------~f~~~~wv~~ 123 (800)
..++|.+..++.+..++..+.-...+.++|+.|+||||+|+.++...... .. .+..+++++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 56899999999999999886445667889999999999999998875210 00 0111222222
Q ss_pred cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccch--hhhhhc---CCcCCCCcE
Q 041843 124 SKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLKKI---GVPLPKNSA 193 (800)
Q Consensus 124 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~---~~~~~~~s~ 193 (800)
.... ..++ ++.+.+.. .+++-++|+|+++.. .....+ ....++...
T Consensus 96 as~~-----------------------gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 96 ASNR-----------------------GIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred ccCC-----------------------CHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 1111 1111 11222221 356679999998643 222332 222233445
Q ss_pred EEEEe-CCcccccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHH
Q 041843 194 VVFTT-RFVDVCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIG 264 (800)
Q Consensus 194 iivTt-R~~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 264 (800)
+|++| +...+... ......+.+.+++.++....+.+.+.......+ .+.+..+++.++|.+..+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 55444 43232211 123457899999999999999887754433222 6778889999999876544443
No 112
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=1.7e-05 Score=86.18 Aligned_cols=180 Identities=17% Similarity=0.185 Sum_probs=106.7
Q ss_pred CCcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCC--------------------CCCEEEE
Q 041843 61 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT--------------------DFDYVIW 120 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~--------------------~f~~~~w 120 (800)
-.+++|.+..++.+.+++..+.-...+.++|+.|+||||+|+.+++....... +++ .++
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~ 94 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLE 94 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 35789999999999999987644567889999999999999999887621100 111 111
Q ss_pred EEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hhhh---hcCCcCCCCcEEE
Q 041843 121 VVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VDLK---KIGVPLPKNSAVV 195 (800)
Q Consensus 121 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~---~~~~~~~~~s~ii 195 (800)
+.........++. .+.+.+. ..-..+.+-++|+|+++.. ...+ .+....++...+|
T Consensus 95 i~g~~~~gid~ir-~i~~~l~------------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 95 IDGASHRGIEDIR-QINETVL------------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred eeccccCCHHHHH-HHHHHHH------------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 1111111111111 1111110 0012356778999998643 2222 2222233466666
Q ss_pred EEeCC-cccccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChh-HHHHH
Q 041843 196 FTTRF-VDVCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPL-ALIII 263 (800)
Q Consensus 196 vTtR~-~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 263 (800)
++|.. ..+... ......+++.+++.++..+.+...+.......+ ++.+..+++.++|.+. |+..+
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 66543 223222 123467899999999999998887654332223 6788999999999764 44433
No 113
>PLN03150 hypothetical protein; Provisional
Probab=98.34 E-value=8.2e-07 Score=101.14 Aligned_cols=106 Identities=24% Similarity=0.373 Sum_probs=84.8
Q ss_pred CCcEEEccCccccccccccccccccccEEeccCCCCcc-cchhhhcCccCceecccccccccccchhhhCCCCCCcEEEe
Q 041843 466 CLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTG-LPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRM 544 (800)
Q Consensus 466 ~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l 544 (800)
.++.|+|++|.....+|..++++.+|++|+|++|.+.. +|..++.+++|+.|++++|.....+|.. +++|++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47888999986556789999999999999999998884 8888999999999999988776678876 789999999999
Q ss_pred eecCCCCCCcccccccchHHHhhCC-CCCcEEEEEecc
Q 041843 545 FATGVGSYGRFSSRYVNVAEELLGL-KYLEVLEITFRS 581 (800)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 581 (800)
++|.+.. ..+..+..+ .++..+++..|.
T Consensus 498 s~N~l~g---------~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSG---------RVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccc---------cCChHHhhccccCceEEecCCc
Confidence 9988765 556666543 345566666553
No 114
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=3.7e-08 Score=94.49 Aligned_cols=184 Identities=18% Similarity=0.117 Sum_probs=103.4
Q ss_pred cccEEeccCCCCcc--cchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhh
Q 041843 490 SLQLLDISYTSVTG--LPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELL 567 (800)
Q Consensus 490 ~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 567 (800)
.|++|||+...|+. +-.-++.+.+|+.|.+.|+..-..+-.. +.+=.+|+.|+++.|+-.... ..---+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n-------~~~ll~~ 257 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTEN-------ALQLLLS 257 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccchh-------HHHHHHH
Confidence 47888888887765 4445677778888888776533333333 566677888888777543321 2333456
Q ss_pred CCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEecccccccc
Q 041843 568 GLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQK 647 (800)
Q Consensus 568 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l 647 (800)
+++.|..|+++++....-.. ...+.+++ ++|+.|+++||...-. .. .+
T Consensus 258 scs~L~~LNlsWc~l~~~~V-----------------------tv~V~his--e~l~~LNlsG~rrnl~--~s-----h~ 305 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKV-----------------------TVAVAHIS--ETLTQLNLSGYRRNLQ--KS-----HL 305 (419)
T ss_pred hhhhHhhcCchHhhccchhh-----------------------hHHHhhhc--hhhhhhhhhhhHhhhh--hh-----HH
Confidence 67777777777665432110 00001121 5677778887753210 00 00
Q ss_pred CCCCcCCCCccEEeeecCCCCCC--ChhhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCc
Q 041843 648 SRQPCVFRSLEEVTVDNCGNLKH--LTFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGL 725 (800)
Q Consensus 648 ~~~~~~~~~L~~L~l~~c~~l~~--l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 725 (800)
......+|+|.+|+|++|..+++ ...+..++.|++|.++.|..+.--.. ......|+|.+|++.+|
T Consensus 306 ~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~------------~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 306 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL------------LELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHe------------eeeccCcceEEEEeccc
Confidence 11112467888888888776665 12345677777777777764321100 12345667777776665
No 115
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=2e-05 Score=88.98 Aligned_cols=191 Identities=14% Similarity=0.165 Sum_probs=108.7
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
.+++|.+..++.|..++..+.-...+.++|+.|+||||+|+.+++.... ..... .....+.-...+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c-~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC-TTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC-CCCCC------CCCCCccCHHHHHHhcCCC
Confidence 5789999999999998887644567789999999999999999987621 00000 0001111112222221111
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccch--hhhhhcCCc---CCCCcEEEEEeCC-cccccc-
Q 041843 142 LYT---DSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTTRF-VDVCGG- 206 (800)
Q Consensus 142 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~~~---~~~~s~iivTtR~-~~~~~~- 206 (800)
... +.......++. +.+.+.+ .+++-++|+|+++.. ...+.+... .+....+|+++.+ ..+...
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 000 00011112221 1222222 245678999998633 333333222 2335566665543 222221
Q ss_pred cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHH
Q 041843 207 MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIII 263 (800)
Q Consensus 207 ~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 263 (800)
......+.+.+++.++....+...+.......+ .+.+..+++.++|.+..+...
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 123357889999999999999887755443223 678889999999998655443
No 116
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=2e-05 Score=88.67 Aligned_cols=176 Identities=13% Similarity=0.155 Sum_probs=108.5
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccC--------------------CCCCCEEEEE
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN--------------------PTDFDYVIWV 121 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~--------------------~~~f~~~~wv 121 (800)
.+++|.+..++.+..++..+.-.+.+.++|+.|+||||+|+.++...... ..+|+ +..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEEe
Confidence 57899999999999999887445668999999999999999998875210 11232 2222
Q ss_pred EEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hhhhhc---CCcCCCCcEEEE
Q 041843 122 VVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVF 196 (800)
Q Consensus 122 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~---~~~~~~~s~iiv 196 (800)
+........++. .+..++.... ..+.+-++|+|++... .....+ ....+..+.+|+
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~P------------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIPP------------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhCc------------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 222222222222 1112211100 1245568899998643 233333 333344566555
Q ss_pred Ee-CCcccccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHH
Q 041843 197 TT-RFVDVCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLAL 260 (800)
Q Consensus 197 Tt-R~~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 260 (800)
+| +...+... ......+++.+++.++....+.+.+.......+ .+.+..|++.++|...-+
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 44 44444332 234568999999999999999887755443333 567899999999977543
No 117
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.31 E-value=1.1e-05 Score=87.59 Aligned_cols=199 Identities=17% Similarity=0.108 Sum_probs=114.0
Q ss_pred ccchhHHH--HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 64 VVGLQSQL--EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 64 ~vgr~~~~--~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
++|-.... ....+.....+....+.|+|+.|+|||+||+++++...+ ...-..++|++. .++..++...+.
T Consensus 108 v~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~ 180 (440)
T PRK14088 108 VVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMK 180 (440)
T ss_pred ccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHh
Confidence 34644332 333333333323456999999999999999999998721 112235667664 345555555442
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh---hh-hhcCCc----CCCCcEEEEEeC-Ccccc--------
Q 041843 142 LYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV---DL-KKIGVP----LPKNSAVVFTTR-FVDVC-------- 204 (800)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---~~-~~~~~~----~~~~s~iivTtR-~~~~~-------- 204 (800)
. ... ..+.+......-+|++||++... .. +.+... ...+..||+||. .+.-.
T Consensus 181 ~-------~~~----~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~ 249 (440)
T PRK14088 181 E-------GKL----NEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV 249 (440)
T ss_pred c-------ccH----HHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHh
Confidence 1 111 22333443456689999996321 11 111111 122667888875 32221
Q ss_pred cccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHH------hc-CCCHHHHH
Q 041843 205 GGMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAM------AY-KKTPEEWR 277 (800)
Q Consensus 205 ~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l------~~-~~~~~~w~ 277 (800)
..+.....+.+++.+.++-.+++++++.......+ ++....|++.+.|.-..+.-+-..+ .+ ..+....+
T Consensus 250 SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~ 326 (440)
T PRK14088 250 SRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAI 326 (440)
T ss_pred hHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 12233457899999999999999988864433333 7788999999988755443332222 11 23555656
Q ss_pred HHHHHH
Q 041843 278 YAIEVL 283 (800)
Q Consensus 278 ~~l~~l 283 (800)
.+++.+
T Consensus 327 ~~L~~~ 332 (440)
T PRK14088 327 LLLKDF 332 (440)
T ss_pred HHHHHH
Confidence 655543
No 118
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.30 E-value=2.8e-08 Score=100.01 Aligned_cols=281 Identities=17% Similarity=0.184 Sum_probs=144.4
Q ss_pred cceEEEccccccCCCCC----CCCCCcceEEEeecCCCccccc----ccccCCCCCcEEEccCcccccccc--ccccccc
Q 041843 420 MGRRLSLMKNSIGNLPT----VPTCPHLLTLFLNDNPLRTITG----GFFQSMPCLTVLKMSDNIMLRQLP--TGISKLV 489 (800)
Q Consensus 420 ~l~~l~l~~~~~~~l~~----~~~~~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~Ls~~~~~~~lp--~~i~~L~ 489 (800)
.++.|++.++.-....+ ...|+++..|.+.+|. .+.. ++-..+++|++|++..|..++... .....++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcce--eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 45677777765433332 3678999999888886 2222 223568899999999976665432 2234688
Q ss_pred cccEEeccCC-CCcc--cchhhhcCccCceecccccccccccchhhh----CCCCCCcEEEeeecCCCCCCcccccccch
Q 041843 490 SLQLLDISYT-SVTG--LPEGLKALVNLKCLNLDWADELVEVPQQLL----SNFSRLRVLRMFATGVGSYGRFSSRYVNV 562 (800)
Q Consensus 490 ~L~~L~L~~~-~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~----~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 562 (800)
+|++|++++| .|++ +-.-...+.+|+.+.+.||.. .+...+ +...-+-.+++..|....+. ..
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~~lTD~-------~~ 286 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCNQLTDE-------DL 286 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhccccch-------HH
Confidence 9999999999 6665 333455666777787777743 222222 23344555555566444332 22
Q ss_pred HHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCc-CCcccCceEEeeccCCcceEEecc
Q 041843 563 AEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADL-ADLEQLNTLYFRSCDWIKGLKIDY 641 (800)
Q Consensus 563 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~l~~~~ 641 (800)
...-..+..|+.|..+.+... .......+ ....+|+.|.+.+|..+.......
T Consensus 287 ~~i~~~c~~lq~l~~s~~t~~--------------------------~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~ 340 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCTDI--------------------------TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM 340 (483)
T ss_pred HHHhhhhhHhhhhcccCCCCC--------------------------chHHHHHHhcCCCceEEEeccccchhhhhhhhh
Confidence 222234455666655543321 11111111 234566666666665443221111
Q ss_pred ccccccCCCCcCCCCccEEeeecCCCCCCChh--h-hcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCccc
Q 041843 642 KDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTF--L-VFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQ 718 (800)
Q Consensus 642 ~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~--l-~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~ 718 (800)
...+.+.|+.+++..|....+-.. + ...|.|+.|.++.|..+++-.. ..+. ........|.
T Consensus 341 --------l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi----~~l~----~~~c~~~~l~ 404 (483)
T KOG4341|consen 341 --------LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI----RHLS----SSSCSLEGLE 404 (483)
T ss_pred --------hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh----hhhh----hccccccccc
Confidence 112345566666666543332211 1 2455566666666554443210 0000 1122344556
Q ss_pred EeeccCcccccccCC-CCCCCCCcceEeecCCCCCCC
Q 041843 719 HLQLGGLGRLKSIYW-KPLPLPRLKELTVVDCDSLEK 754 (800)
Q Consensus 719 ~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~L~~ 754 (800)
.|.+.+|+....-.. ....+++|+.+++.+|....+
T Consensus 405 ~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 405 VLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred eeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 666666655433221 123345666666665544444
No 119
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.30 E-value=1e-05 Score=87.84 Aligned_cols=164 Identities=10% Similarity=0.098 Sum_probs=101.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
...+.|+|..|+|||+|++++++.... ......+++++. .++...+...+... ......+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~~------~~f~~~~~~~l~~~---------~~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMSG------DEFARKAVDILQKT---------HKEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHHHh---------hhHHHHHHHHh
Confidence 356899999999999999999997621 122334555543 45566666554310 01233444444
Q ss_pred cCCceEEEEccccch----hhhhhcCCc----CCCCcEEEEEeCCcc-c--------ccccCccceEEeccCChHHHHHH
Q 041843 164 SKKKFALLLDDLWER----VDLKKIGVP----LPKNSAVVFTTRFVD-V--------CGGMEARRKFKVACLSDEDAWEL 226 (800)
Q Consensus 164 ~~~~~LlvlDdv~~~----~~~~~~~~~----~~~~s~iivTtR~~~-~--------~~~~~~~~~~~l~~L~~~e~~~l 226 (800)
.. .-+||+||+... ...+.+..- ...+..||+|+.... . ...+...-.+.+++++.++-.++
T Consensus 205 ~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 CQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 43 447888999532 112222111 123667888876332 1 12223445788999999999999
Q ss_pred HHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHH
Q 041843 227 FREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGR 265 (800)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 265 (800)
+.+++...... ..-.+++..-|++.++|.|..+.-+..
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 99888543211 012278899999999999977765553
No 120
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.29 E-value=7.5e-06 Score=92.44 Aligned_cols=200 Identities=16% Similarity=0.092 Sum_probs=109.4
Q ss_pred CCcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC---CEEEEEEEcCc---cCHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF---DYVIWVVVSKD---LQLEKIQE 134 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f---~~~~wv~~~~~---~~~~~~~~ 134 (800)
-+.++|++..++.+.+.+... ....+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+..
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~-~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASP-FPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 356899999999988877644 56789999999999999999998765 212221 12334443321 12222211
Q ss_pred HH---------------HHHhCCCC----------------CCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hhh
Q 041843 135 TI---------------GKKIGLYT----------------DSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VDL 181 (800)
Q Consensus 135 ~i---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~ 181 (800)
.+ +...+... ++.... ....+..+.+.+.++++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccc
Confidence 11 11111100 010111 123456677777777777776665533 234
Q ss_pred hhcCCcCCC---CcEEEE--EeCCccccc-cc-CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhC
Q 041843 182 KKIGVPLPK---NSAVVF--TTRFVDVCG-GM-EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECG 254 (800)
Q Consensus 182 ~~~~~~~~~---~s~iiv--TtR~~~~~~-~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 254 (800)
+.+...+.. ...|++ ||++..... .+ .....+.+.+++.+|.++++.+.+.......+ +++.+.|.+.+.
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~ 386 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTI 386 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCC
Confidence 444332222 233444 566443211 11 12346789999999999999988754321111 445555555554
Q ss_pred CChhHHHHHHHH
Q 041843 255 GLPLALIIIGRA 266 (800)
Q Consensus 255 g~Plai~~~~~~ 266 (800)
.-+.++..++..
T Consensus 387 ~gRraln~L~~~ 398 (615)
T TIGR02903 387 EGRKAVNILADV 398 (615)
T ss_pred cHHHHHHHHHHH
Confidence 445555555443
No 121
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.29 E-value=1.7e-05 Score=79.65 Aligned_cols=164 Identities=20% Similarity=0.209 Sum_probs=108.8
Q ss_pred CCcccchhHHHHHHHHHhccCCC--ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQEPA--AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 138 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~~~~--~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 138 (800)
.+.+.+|+.++..+..++.+++. +..|.|+|.+|.|||.+++++.+.. . ...+|+++-..++.+.+...|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n-----~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-N-----LENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-C-----CcceeeehHHhccHHHHHHHHHH
Confidence 46789999999999999987533 3456999999999999999998886 2 23589999999999999999999
Q ss_pred HhCCCCCC-CCCCCHHHH----HHHHHH--Hhc--CCceEEEEccccchhhhhhcCCc--------CCCCcEEEEEeCCc
Q 041843 139 KIGLYTDS-WKSKSLEEK----AQDIFK--TLS--KKKFALLLDDLWERVDLKKIGVP--------LPKNSAVVFTTRFV 201 (800)
Q Consensus 139 ~l~~~~~~-~~~~~~~~~----~~~l~~--~l~--~~~~LlvlDdv~~~~~~~~~~~~--------~~~~s~iivTtR~~ 201 (800)
+.+....+ .......+. +..+.+ ... ++.++||||+++...|.+....+ .+....+|+++-..
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 98622211 111111112 222222 122 35899999999765554433211 22345556655532
Q ss_pred cc---ccccC--ccceEEeccCChHHHHHHHHHH
Q 041843 202 DV---CGGME--ARRKFKVACLSDEDAWELFREK 230 (800)
Q Consensus 202 ~~---~~~~~--~~~~~~l~~L~~~e~~~l~~~~ 230 (800)
.. ...++ ...++..+..+.+|..+++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 22 11122 2346778899999999998654
No 122
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.27 E-value=1.6e-05 Score=83.52 Aligned_cols=143 Identities=13% Similarity=0.159 Sum_probs=85.3
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
.+++|.++..+.+..++..+.-..++.++|++|+||||+|+++++.. ... +..++.+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHH
Confidence 57899999999999998876445677779999999999999998875 222 23344433 122211111111100
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch---h---hhhhcCCcCCCCcEEEEEeCCcccc-cc-cCccceE
Q 041843 142 LYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER---V---DLKKIGVPLPKNSAVVFTTRFVDVC-GG-MEARRKF 213 (800)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---~---~~~~~~~~~~~~s~iivTtR~~~~~-~~-~~~~~~~ 213 (800)
. ..+.+.+-++|+|+++.. . .+..+....+.+.++|+||...... .. ......+
T Consensus 94 ~------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 94 T------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred h------------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEE
Confidence 0 001234568999999643 1 1233223344577888888643321 10 1223467
Q ss_pred EeccCChHHHHHHHHH
Q 041843 214 KVACLSDEDAWELFRE 229 (800)
Q Consensus 214 ~l~~L~~~e~~~l~~~ 229 (800)
.++..+.++..+++..
T Consensus 156 ~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 156 DFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EeCCCCHHHHHHHHHH
Confidence 7778888888766654
No 123
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=3e-08 Score=106.13 Aligned_cols=156 Identities=23% Similarity=0.281 Sum_probs=110.1
Q ss_pred CccccccccceEEEccccccCCCCC---------------------------------CCCCCcceEEEeecCCCccccc
Q 041843 412 PADVRGWEMGRRLSLMKNSIGNLPT---------------------------------VPTCPHLLTLFLNDNPLRTITG 458 (800)
Q Consensus 412 ~~~~~~~~~l~~l~l~~~~~~~l~~---------------------------------~~~~~~L~~L~l~~~~l~~~~~ 458 (800)
|-++..+.++|+|.+.++.+..... ...+-.|.+.+.++|.+..+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 5677788899999998887643221 1223345666666666655554
Q ss_pred ccccCCCCCcEEEccCccccccccccccccccccEEeccCCCCcccchh-hhcCccCceecccccccccccchhhhCCCC
Q 041843 459 GFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFS 537 (800)
Q Consensus 459 ~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~ 537 (800)
+ +.-++.|+.|+|++| .....- .+..|++|++|||++|.++.+|.- +..+ +|+.|++++| .++.+-. +.+|.
T Consensus 182 S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~g--ie~Lk 254 (1096)
T KOG1859|consen 182 S-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLRG--IENLK 254 (1096)
T ss_pred H-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhhh--HHhhh
Confidence 4 667788999999998 555544 678888999999999988887752 3333 3888889865 4666654 78899
Q ss_pred CCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccc
Q 041843 538 RLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSF 582 (800)
Q Consensus 538 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 582 (800)
+|+.|++++|-+... ....-++.|..|+.|++.+|.+
T Consensus 255 sL~~LDlsyNll~~h--------seL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEH--------SELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhccchhHhhhhcc--------hhhhHHHHHHHHHHHhhcCCcc
Confidence 999999988876543 3445566677788888887765
No 124
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.26 E-value=1.9e-06 Score=88.49 Aligned_cols=89 Identities=19% Similarity=0.198 Sum_probs=61.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCcc--CHHHHHHHHHHHhCCCCCCCCCCCHHHHHH---
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL--QLEKIQETIGKKIGLYTDSWKSKSLEEKAQ--- 157 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~--- 157 (800)
..+..+|+|++|+||||||+++|+... ..+|+.++||.+.+.. .+.++++.+...+-... ..........
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st---~d~~~~~~~~~a~ 242 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST---FDEPAERHVQVAE 242 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC---CCCCHHHHHHHHH
Confidence 457889999999999999999999983 2389999999998877 77888888863221111 1122211111
Q ss_pred ---HHHHH--hcCCceEEEEcccc
Q 041843 158 ---DIFKT--LSKKKFALLLDDLW 176 (800)
Q Consensus 158 ---~l~~~--l~~~~~LlvlDdv~ 176 (800)
...++ -.+++++|++|++.
T Consensus 243 ~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 243 MVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHcCCCEEEEEEChH
Confidence 11111 36799999999984
No 125
>PRK06620 hypothetical protein; Validated
Probab=98.25 E-value=1.3e-05 Score=77.75 Aligned_cols=133 Identities=15% Similarity=0.052 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLS 164 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 164 (800)
+.+.|||++|+|||+|++++++.. .. .++.. .+. . + +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~~--~~~--------------------~---~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIKD--IFF--------------------N---E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcch--hhh--------------------c---h-------hHH-
Confidence 679999999999999999987765 11 11110 000 0 0 011
Q ss_pred CCceEEEEccccchhh--hhhcCCcC-CCCcEEEEEeCCcccc-------cccCccceEEeccCChHHHHHHHHHHhCcc
Q 041843 165 KKKFALLLDDLWERVD--LKKIGVPL-PKNSAVVFTTRFVDVC-------GGMEARRKFKVACLSDEDAWELFREKVGEE 234 (800)
Q Consensus 165 ~~~~LlvlDdv~~~~~--~~~~~~~~-~~~s~iivTtR~~~~~-------~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~ 234 (800)
+..-++++||+....+ +-.+...+ ..|..||+|++..... ..+....++++++++.++-.+++++.+...
T Consensus 84 ~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 84 EKYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred hcCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 1234788899964322 21221111 3377899998854331 112334479999999999888888877543
Q ss_pred cccCCCChHHHHHHHHHHhCCChhHHH
Q 041843 235 TIESHHSIPQLAQTVAKECGGLPLALI 261 (800)
Q Consensus 235 ~~~~~~~~~~~~~~i~~~~~g~Plai~ 261 (800)
....+ +++.+-|++++.|.--.+.
T Consensus 164 ~l~l~---~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 SVTIS---RQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CCCCC---HHHHHHHHHHccCCHHHHH
Confidence 32333 6778888888876654433
No 126
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.24 E-value=2.9e-05 Score=74.56 Aligned_cols=115 Identities=23% Similarity=0.255 Sum_probs=69.7
Q ss_pred CCcccchhHHHHHHHHHh---ccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCL---VQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
-..++|.|.+.+.|++-. ..+....-|.+||..|+|||++++++.+.+ ....-..+-|.-..
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y---~~~GLRlIev~k~~------------ 90 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY---ADQGLRLIEVSKED------------ 90 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH---hhcCceEEEECHHH------------
Confidence 457999999998887643 334356788899999999999999999988 22222222222111
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEcccc---chhhhhhcC-------CcCCCCcEEEEEeCCccc
Q 041843 138 KKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLW---ERVDLKKIG-------VPLPKNSAVVFTTRFVDV 203 (800)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~---~~~~~~~~~-------~~~~~~s~iivTtR~~~~ 203 (800)
-.++....+.++. ...|++|++||+. .+.....+. ...|++..|..||..++.
T Consensus 91 -----------L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 91 -----------LGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred -----------hccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 1222233333331 3568999999983 222233322 223446677777765444
No 127
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.23 E-value=1.7e-05 Score=84.95 Aligned_cols=167 Identities=16% Similarity=0.236 Sum_probs=97.8
Q ss_pred cccchhHHHHHHHHHhcc---C---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 63 TVVGLQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~---~---------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
++.|++++++++.+.+.. . ..++-|.++|++|+|||++|+++++.. ... |+.+.. .
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~----~ 199 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG----S 199 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----H
Confidence 467999999999887632 1 245679999999999999999999986 222 222221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEccccchh------------h----hhhcCCc---CC-
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-SKKKFALLLDDLWERV------------D----LKKIGVP---LP- 189 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~------------~----~~~~~~~---~~- 189 (800)
.+ .... ... .......+.+.. ...+.+|+||+++... . +..+... +.
T Consensus 200 ~l----~~~~-------~g~-~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 200 EL----VQKF-------IGE-GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred HH----hHhh-------ccc-hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 11 1110 001 112223333332 3467899999986421 1 1111111 11
Q ss_pred -CCcEEEEEeCCcccccc-----cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 190 -KNSAVVFTTRFVDVCGG-----MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 190 -~~s~iivTtR~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
.+..||.||........ -..+..+.+++.+.++-.++|+.++.......+. ....+++.+.|.-
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~----~~~~la~~t~g~s 337 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV----DLEELAELTEGAS 337 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC----CHHHHHHHcCCCC
Confidence 25667777775433221 1234579999999999999999887654432222 2456677776643
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=5.3e-05 Score=85.30 Aligned_cols=193 Identities=15% Similarity=0.115 Sum_probs=108.3
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
..++|.+..++.|..++..+.-.+.+.++|+.|+||||+|+.+++..... . .+... ....+.-...+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~-~~~~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL-N-SDKPT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC-C-cCCCC----CCCCcccHHHHHHhcCCC
Confidence 56899999999999999876445788999999999999999999987211 0 00000 001111112222221111
Q ss_pred CC---CCCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccch--hhhhhcCCc---CCCCcEEEEEeCCc-ccccc-
Q 041843 142 LY---TDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTTRFV-DVCGG- 206 (800)
Q Consensus 142 ~~---~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~~~---~~~~s~iivTtR~~-~~~~~- 206 (800)
.. .+.......+.. +.+.+.. .+++-++|+|+++.. .....+... .+....+|++|.+. .+...
T Consensus 90 ~D~~ei~~~~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 00 000011122222 2222222 245678999999743 333333222 22345555555432 22221
Q ss_pred cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHH
Q 041843 207 MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIG 264 (800)
Q Consensus 207 ~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 264 (800)
......+++.+++.++....+.+.+.......+ .+.+..|++.++|.+..+..+.
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 123457888999999999888877654332222 5678899999999886554433
No 129
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.1e-06 Score=66.30 Aligned_cols=56 Identities=32% Similarity=0.488 Sum_probs=53.1
Q ss_pred cceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCc
Q 041843 420 MGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDN 475 (800)
Q Consensus 420 ~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~ 475 (800)
+++.|++++|.+..+| .|.++++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 6789999999999998 4889999999999999999999999999999999999999
No 130
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=5e-05 Score=84.46 Aligned_cols=189 Identities=15% Similarity=0.119 Sum_probs=107.3
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
.+++|-+..++++..++..+.-.+.+.++|+.|+||||+|+.+++..... ...... .+..-.+- +.+...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~-~~~~~~---pC~~C~~C----~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCV-NGPTPM---PCGECSSC----KSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc-cCCCCC---CCccchHH----HHHHcCCC
Confidence 57899999999999999887445678999999999999999999886211 100000 00000000 01100000
Q ss_pred CC---CCCCCCCCHHHHHHHHHHH-----hcCCceEEEEccccch--hhhhhcCCc---CCCCcEEEEEeCC-cccccc-
Q 041843 142 LY---TDSWKSKSLEEKAQDIFKT-----LSKKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTTRF-VDVCGG- 206 (800)
Q Consensus 142 ~~---~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~~~~~~~~---~~~~s~iivTtR~-~~~~~~- 206 (800)
.. .+.......++..+ +.+. ..+++-++|+|++... ..+..+... .+....+|++|.. ..+...
T Consensus 88 ~dv~~idgas~~~vddIr~-l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQ-IKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCeEEecCcccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 00 00000112222211 1111 2356678999998543 333333222 3345666665543 222211
Q ss_pred cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHH
Q 041843 207 MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALII 262 (800)
Q Consensus 207 ~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 262 (800)
......+++.+++.++..+.+.+.+.......+ ++.+..|++.++|.+..+..
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 123457899999999999999887754433323 67888899999998854433
No 131
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.21 E-value=8.6e-05 Score=80.57 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=95.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
...+.|+|+.|+|||+||+++++...+ ...-..++++++ .++...+...+.. ... ..+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~-~~~~~~v~yi~~------~~~~~~~~~~~~~-------~~~----~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILE-NNPNAKVVYVSS------EKFTNDFVNALRN-------NKM----EEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH-hCCCCcEEEEEH------HHHHHHHHHHHHc-------CCH----HHHHHHH
Confidence 357899999999999999999998722 222245566653 3334444444421 112 2233333
Q ss_pred cCCceEEEEccccchh---h-hhhcCC---c-CCCCcEEEEEeCCc-cc--------ccccCccceEEeccCChHHHHHH
Q 041843 164 SKKKFALLLDDLWERV---D-LKKIGV---P-LPKNSAVVFTTRFV-DV--------CGGMEARRKFKVACLSDEDAWEL 226 (800)
Q Consensus 164 ~~~~~LlvlDdv~~~~---~-~~~~~~---~-~~~~s~iivTtR~~-~~--------~~~~~~~~~~~l~~L~~~e~~~l 226 (800)
.+ .-+|||||++... . .+.+.. . ...+..+|+|+... .. ...+.....+.+++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 33 3488899996321 1 111111 1 12356678877632 11 22223335789999999999999
Q ss_pred HHHHhCcccccCCCChHHHHHHHHHHhCCChhHHH
Q 041843 227 FREKVGEETIESHHSIPQLAQTVAKECGGLPLALI 261 (800)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 261 (800)
+.+++.......+ ++....|++.+.|..-.+.
T Consensus 277 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGLELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 9998865443333 7888999999998876443
No 132
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=6.3e-05 Score=84.08 Aligned_cols=189 Identities=16% Similarity=0.119 Sum_probs=106.0
Q ss_pred CCcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHh
Q 041843 61 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKI 140 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 140 (800)
-.+++|.+..++.+.+++..+.-.+.+.++|+.|+||||+|+.++...... ..-+. .+.+.-..-..+....
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~-~~~~~-------~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL-NPPDG-------EPCNECEICKAITNGS 86 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC-CCCCC-------CCCCccHHHHHHhcCC
Confidence 357899999999999999887456678889999999999999998876211 10000 0000000111111000
Q ss_pred CCC---CCCCCCCCHHHHHHHHHHH-----hcCCceEEEEccccch--hhhhhcC---CcCCCCcEEEEEe-CCcccccc
Q 041843 141 GLY---TDSWKSKSLEEKAQDIFKT-----LSKKKFALLLDDLWER--VDLKKIG---VPLPKNSAVVFTT-RFVDVCGG 206 (800)
Q Consensus 141 ~~~---~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~~~~~~---~~~~~~s~iivTt-R~~~~~~~ 206 (800)
... .+.......++ ++.+.+. ..++.-++|+|++... ..+..+. ...+....+|++| ....+...
T Consensus 87 ~~dv~eidaas~~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 87 LMDVIEIDAASNNGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCeEEeeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 000 00000111221 1122222 2356678899999643 3333332 2223355555444 43333221
Q ss_pred -cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHH
Q 041843 207 -MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALI 261 (800)
Q Consensus 207 -~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 261 (800)
......+.+.+++.++..+.+...+.......+ .+....|++.++|.+..+.
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 123457889999999999999887754443223 6778889999999875433
No 133
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.21 E-value=1.6e-05 Score=77.52 Aligned_cols=188 Identities=15% Similarity=0.173 Sum_probs=114.8
Q ss_pred CCCCCcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-EEEEEEEcCccCHHHHHHHH
Q 041843 58 RPTEPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-YVIWVVVSKDLQLEKIQETI 136 (800)
Q Consensus 58 ~~~~~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 136 (800)
|+.-.+++|.+..++-+.+.+.. ...++...|||+|.|||+-|.+++... ...+-|. .++-.++|...+..-+-.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~-- 107 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVRE-- 107 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhh--
Confidence 34456789999999999999988 478999999999999999999998887 3333444 333344444333221100
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhc---CCc-eEEEEccccch--hhhhhcC---CcCCCCcEEEEEeCC-cccccc
Q 041843 137 GKKIGLYTDSWKSKSLEEKAQDIFKTLS---KKK-FALLLDDLWER--VDLKKIG---VPLPKNSAVVFTTRF-VDVCGG 206 (800)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~~~-~LlvlDdv~~~--~~~~~~~---~~~~~~s~iivTtR~-~~~~~~ 206 (800)
...+.+....... ... .++ -.+|||+++.. +.|..+. ..++..++.|+.+.. ..+...
T Consensus 108 -----------Kik~fakl~~~~~-~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 108 -----------KIKNFAKLTVLLK-RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred -----------hhcCHHHHhhccc-cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 0111111110000 001 123 57889999754 4455553 333445554444442 222222
Q ss_pred c-CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh-hHHHHHH
Q 041843 207 M-EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP-LALIIIG 264 (800)
Q Consensus 207 ~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~ 264 (800)
+ .....+..++|..++..+-++..+..+.+.-+ .++.+.|++.++|-- -|+.++-
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 1 23356889999999999999888876665444 788899999998843 4444433
No 134
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=4.1e-07 Score=87.49 Aligned_cols=84 Identities=10% Similarity=0.031 Sum_probs=39.7
Q ss_pred ccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCChh
Q 041843 594 LRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTF 673 (800)
Q Consensus 594 l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 673 (800)
+.+++..+.+..++........+..+++.+--|+++.+..-. |...- ....|+.|+.|.+.+.+-+..+.-
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~ids-----wasvD----~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDS-----WASVD----ALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhccccccc-----HHHHH----HHcCCchhheeeccCCcccccccC
Confidence 334445555544443333223344555666666666554322 11110 011356677776666654444321
Q ss_pred -------hhcCCCCcEEEEe
Q 041843 674 -------LVFAPNLKSISVR 686 (800)
Q Consensus 674 -------l~~l~~L~~L~l~ 686 (800)
++.+++++.|+=+
T Consensus 268 ~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 268 GERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CcceEEEEeeccceEEecCc
Confidence 3456666666433
No 135
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.19 E-value=2.2e-06 Score=87.39 Aligned_cols=286 Identities=19% Similarity=0.186 Sum_probs=175.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT 162 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 162 (800)
..+.+.++|.|||||||++-++.. .+ ..+-+.++++....-.+...+.-.+...++... ..-+.....+..+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHHH
Confidence 358999999999999999999988 41 234456777777777777777777777666532 2223345567777
Q ss_pred hcCCceEEEEccccchhh-----hhhcCCcCCCCcEEEEEeCCcccccccCccceEEeccCChH-HHHHHHHHHhCccc-
Q 041843 163 LSKKKFALLLDDLWERVD-----LKKIGVPLPKNSAVVFTTRFVDVCGGMEARRKFKVACLSDE-DAWELFREKVGEET- 235 (800)
Q Consensus 163 l~~~~~LlvlDdv~~~~~-----~~~~~~~~~~~s~iivTtR~~~~~~~~~~~~~~~l~~L~~~-e~~~l~~~~~~~~~- 235 (800)
..+++.++|+||..+..+ ...+... ...-.|+.|+|.... +.....+.+++|+.. ++.++|...+....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~-~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGA-CPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHcc-chhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 888999999999754422 1111111 114467788885433 234567778888765 78899877663221
Q ss_pred -ccCCCChHHHHHHHHHHhCCChhHHHHHHHHHhcCCCHHHH----HHHHHHHHhhhhccCCChhHHHHHHhhhccCCCh
Q 041843 236 -IESHHSIPQLAQTVAKECGGLPLALIIIGRAMAYKKTPEEW----RYAIEVLRRSASEFAGLGKEVYSLLKFSYDCLPN 310 (800)
Q Consensus 236 -~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w----~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 310 (800)
......-......|.++.+|.|++|..+++..+. ....+- .+-...+......-.-.+......+..||.-|..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 1122333677889999999999999999988765 333222 2222222222111111124567788889998887
Q ss_pred hhHHHHHhHhccCCCCcccchHHHHHHHHhcCCccccccchhhhHHHHHHHHHHhcccccc---cCCcEEEehHHHHHHH
Q 041843 311 DAIRSCFLYCCLYPEDYSIDKRDLIDCWMCEGFLEEDKFGTQNRGSHIVTTLVRACLLEEV---EDDQVKMHDVVRDMAL 387 (800)
Q Consensus 311 ~~~k~c~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~L~~~~ll~~~---~~~~~~~h~l~~~~~~ 387 (800)
-.+..|.-++.|...+.-. ...|.+.|-.. .......-..+..+++++++... ....|+.-+-.+.|+.
T Consensus 240 -we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~---~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 240 -WERALFGRLAVFVGGFDLG----LALAVAAGADV---DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred -HHHHHhcchhhhhhhhccc----HHHHHhcCCcc---ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 6788888888887765433 22344333211 01223334456677777776543 2334444445555554
Q ss_pred HH
Q 041843 388 WI 389 (800)
Q Consensus 388 ~i 389 (800)
..
T Consensus 312 ae 313 (414)
T COG3903 312 AE 313 (414)
T ss_pred HH
Confidence 43
No 136
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.6e-05 Score=86.45 Aligned_cols=190 Identities=12% Similarity=0.119 Sum_probs=105.8
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
.+++|.+..++.+.+++..+.-...+.++|+.|+||||+|+.+++..... ..... ...+.-..-..+...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~-~~~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE-QGLTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC-CCCCC-------CCCCccHHHHHHhcCCC
Confidence 57899999999999999877445677899999999999999998886211 11000 00000000000000000
Q ss_pred CC---CCCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccch--hhhhhcC---CcCCCCcEEEEEe-CCcccccc-
Q 041843 142 LY---TDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLKKIG---VPLPKNSAVVFTT-RFVDVCGG- 206 (800)
Q Consensus 142 ~~---~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~~---~~~~~~s~iivTt-R~~~~~~~- 206 (800)
.. .+.......++ ++.+.+.+ .+++-++|+|++... .....+. ...++...+|++| ....+...
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 00 00000111111 12222222 245568999998643 2233332 2233455655544 43333322
Q ss_pred cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh-hHHHHH
Q 041843 207 MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP-LALIII 263 (800)
Q Consensus 207 ~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~ 263 (800)
......+++.+++.++....+...+.......+ .+....|++.++|.. .|+..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 223467889999999999888877654443333 677889999999976 444444
No 137
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=0.00026 Score=73.02 Aligned_cols=193 Identities=17% Similarity=0.169 Sum_probs=108.7
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC------------CCCCEEEEEEEcCccCH
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP------------TDFDYVIWVVVSKDLQL 129 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~------------~~f~~~~wv~~~~~~~~ 129 (800)
.+++|.+...+.+.+.+..+.-.+...++|+.|+||+++|.++++...... ....-..|+.-.....-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 367999999999999998874468999999999999999999988762211 11122334332100000
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccchh--h----hhhcCCcCCCCcEEEEEe
Q 041843 130 EKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWERV--D----LKKIGVPLPKNSAVVFTT 198 (800)
Q Consensus 130 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~----~~~~~~~~~~~s~iivTt 198 (800)
..+...-+...+...........++ ++.+.+.+ .+.+-++|+|+++... . +..+..| + .+.+|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP-p-~~~fILi~ 160 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP-G-NGTLILIA 160 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC-C-CCeEEEEE
Confidence 0000011111110000001112222 33444444 3566789999986442 2 2223233 3 44555554
Q ss_pred C-Ccccccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHH
Q 041843 199 R-FVDVCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIII 263 (800)
Q Consensus 199 R-~~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 263 (800)
. ...+... ......+.+.+++.++..+.+.+...... .......++..++|.|..+..+
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 4 3333322 23456899999999999999987743221 0112468899999999655443
No 138
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.17 E-value=2e-07 Score=101.41 Aligned_cols=82 Identities=32% Similarity=0.436 Sum_probs=34.7
Q ss_pred CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccCCCCcccchhhhcCccCce
Q 041843 437 VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKC 516 (800)
Q Consensus 437 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 516 (800)
+..+.+|..|++.+|.+..+... +..+++|++|++++| .+..+. .+..+..|+.|++++|.|+.++ .+..+.+|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhheeccCcchhcc-CCccchhhhc
Confidence 34444444444444444444332 234444444444444 333332 2334444444444444444432 2223444444
Q ss_pred eccccc
Q 041843 517 LNLDWA 522 (800)
Q Consensus 517 L~l~~~ 522 (800)
+++++|
T Consensus 167 l~l~~n 172 (414)
T KOG0531|consen 167 LDLSYN 172 (414)
T ss_pred ccCCcc
Confidence 444444
No 139
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.15 E-value=7e-05 Score=82.40 Aligned_cols=155 Identities=18% Similarity=0.123 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLS 164 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 164 (800)
..+.|+|..|+|||.|++++++.... ......+++++. .++..++...+.. .. ...+++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 45899999999999999999998721 112334566554 3344444443321 11 122334443
Q ss_pred CCceEEEEccccch---hh----hhhcCCc-CCCCcEEEEEeCCc---------ccccccCccceEEeccCChHHHHHHH
Q 041843 165 KKKFALLLDDLWER---VD----LKKIGVP-LPKNSAVVFTTRFV---------DVCGGMEARRKFKVACLSDEDAWELF 227 (800)
Q Consensus 165 ~~~~LlvlDdv~~~---~~----~~~~~~~-~~~~s~iivTtR~~---------~~~~~~~~~~~~~l~~L~~~e~~~l~ 227 (800)
+ .=+|||||+... .. +-.+... ...+..|||||+.. .+...+...-++.++..+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 347888999532 11 1111111 12267788888742 11223344568899999999999999
Q ss_pred HHHhCcccccCCCChHHHHHHHHHHhCCChhHHH
Q 041843 228 REKVGEETIESHHSIPQLAQTVAKECGGLPLALI 261 (800)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 261 (800)
.+++....+..+ +++..-|++++.+..-.+.
T Consensus 456 ~kka~~r~l~l~---~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 456 RKKAVQEQLNAP---PEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHhcCCCCC---HHHHHHHHHhccCCHHHHH
Confidence 998865554444 7888888888877654443
No 140
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.14 E-value=0.0001 Score=79.81 Aligned_cols=150 Identities=15% Similarity=0.106 Sum_probs=90.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
...+.|+|+.|+|||+||+++++... .....+++++. ..+...+...+.. .. ...+++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~~------~~f~~~~~~~l~~-------~~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVRS------ELFTEHLVSAIRS-------GE----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEeeH------HHHHHHHHHHHhc-------ch----HHHHHHHc
Confidence 35689999999999999999999872 22344555553 3344455444421 01 12344444
Q ss_pred cCCceEEEEccccchh----hhhhcCCc----CCCCcEEEEEeCCc-cc--------ccccCccceEEeccCChHHHHHH
Q 041843 164 SKKKFALLLDDLWERV----DLKKIGVP----LPKNSAVVFTTRFV-DV--------CGGMEARRKFKVACLSDEDAWEL 226 (800)
Q Consensus 164 ~~~~~LlvlDdv~~~~----~~~~~~~~----~~~~s~iivTtR~~-~~--------~~~~~~~~~~~l~~L~~~e~~~l 226 (800)
. ..-+|++||+.... ..+.+... ...|..||+||... .. ...+.....+.+.+++.++-.++
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 34588889985321 11111111 12366788888542 11 22233346789999999999999
Q ss_pred HHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 227 FREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
+.+++.......+ +++..-|++.+.|.-
T Consensus 280 L~~k~~~~~~~l~---~evl~~la~~~~~di 307 (445)
T PRK12422 280 LERKAEALSIRIE---ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCH
Confidence 9988855443333 677777888877654
No 141
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.11 E-value=2.4e-05 Score=85.94 Aligned_cols=178 Identities=18% Similarity=0.143 Sum_probs=104.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
...+.|+|+.|+|||+||+++++...+ ......+++++.. ++...+...+.. .. ...+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~v~yi~~~------~~~~~~~~~~~~-------~~----~~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILE-KNPNAKVVYVTSE------KFTNDFVNALRN-------NT----MEEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEEEHH------HHHHHHHHHHHc-------Cc----HHHHHHHH
Confidence 457999999999999999999999721 1113345666543 333444444321 11 12333444
Q ss_pred cCCceEEEEccccchh----hhhhcCC---c-CCCCcEEEEEeCCcc---------cccccCccceEEeccCChHHHHHH
Q 041843 164 SKKKFALLLDDLWERV----DLKKIGV---P-LPKNSAVVFTTRFVD---------VCGGMEARRKFKVACLSDEDAWEL 226 (800)
Q Consensus 164 ~~~~~LlvlDdv~~~~----~~~~~~~---~-~~~~s~iivTtR~~~---------~~~~~~~~~~~~l~~L~~~e~~~l 226 (800)
+ +.-+||+||++... ..+.+.. . ...+..||+|+.... +...+.....+++++.+.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 4 34488999995321 1111111 1 123566888876432 122233445789999999999999
Q ss_pred HHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHH------h-cCCCHHHHHHHHHHH
Q 041843 227 FREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAM------A-YKKTPEEWRYAIEVL 283 (800)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l------~-~~~~~~~w~~~l~~l 283 (800)
+++++.......+ ++....|++.+.|....+.-+-..+ . ..-+....+.+++.+
T Consensus 289 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 289 LKKKAEEEGIDLP---DEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 9998864332333 7889999999998876443322221 1 113555666655543
No 142
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.09 E-value=2.1e-05 Score=84.21 Aligned_cols=167 Identities=14% Similarity=0.168 Sum_probs=95.4
Q ss_pred cccchhHHHHHHHHHhcc---C---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 63 TVVGLQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~---~---------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
++.|.+.+++++.+.+.- . ...+-+.|+|++|+|||++|+++++.. ...| +.+...
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~s---- 251 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVGS---- 251 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEecc----
Confidence 467899999988887631 1 234678899999999999999999987 3333 222111
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh----------------hhhhcCCcC-----C
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV----------------DLKKIGVPL-----P 189 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~~-----~ 189 (800)
++.. .. ...........+...-.+.+.+|+||+++... .+..+...+ .
T Consensus 252 eL~~----k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 ELIQ----KY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred hhhh----hh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 1111 00 01111111222222234578899999975321 011111111 2
Q ss_pred CCcEEEEEeCCcccccc-----cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCC
Q 041843 190 KNSAVVFTTRFVDVCGG-----MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGL 256 (800)
Q Consensus 190 ~~s~iivTtR~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 256 (800)
.+..||+||........ ...+..+.++..+.++..++|..++.......+.+ ...++..+.|+
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~ 388 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDEL 388 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCC
Confidence 25678888875444322 12356789999999999999998875544322222 34555555554
No 143
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.08 E-value=1.6e-05 Score=82.33 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=62.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc--cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHH---
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD--LQLEKIQETIGKKIGLYTDSWKSKSLEEKAQ--- 157 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~--- 157 (800)
....++|+|++|+|||||++.+++... ..+|+..+|+.+.+. .++.++++.+...+-...-+.....-.....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 457899999999999999999999973 237999999998865 7899999998554322111101111011111
Q ss_pred -HHHH-HhcCCceEEEEccccc
Q 041843 158 -DIFK-TLSKKKFALLLDDLWE 177 (800)
Q Consensus 158 -~l~~-~l~~~~~LlvlDdv~~ 177 (800)
.... .-.+++++|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 1111 1358999999999853
No 144
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.08 E-value=0.00018 Score=71.63 Aligned_cols=194 Identities=14% Similarity=0.145 Sum_probs=115.1
Q ss_pred cccchh---HHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCC---CCCEEEEEEEcCccCHHHHHH
Q 041843 63 TVVGLQ---SQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT---DFDYVIWVVVSKDLQLEKIQE 134 (800)
Q Consensus 63 ~~vgr~---~~~~~l~~~l~~~--~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~ 134 (800)
..+|-. +.++++.+.+... .+.+-+.|+|..|+|||++++++...+....+ .-.-|+.|.+...++...++.
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHH
Confidence 455532 3455566656542 35678999999999999999999988722111 111477788888999999999
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC-CceEEEEccccch-----hh----hhhcCCcCCC---CcEEEEEeCCc
Q 041843 135 TIGKKIGLYTDSWKSKSLEEKAQDIFKTLSK-KKFALLLDDLWER-----VD----LKKIGVPLPK---NSAVVFTTRFV 201 (800)
Q Consensus 135 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~-----~~----~~~~~~~~~~---~s~iivTtR~~ 201 (800)
.|+.+++.+... ..............++. +.-+||+|++-+. .+ +..+ ..+++ =+-|.|-|++.
T Consensus 115 ~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 115 AILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHH
Confidence 999999976532 33444444444455544 4468999998432 11 1111 12222 34566666632
Q ss_pred ccccc-----cCccceEEeccCChHHH-HHHHHHHhCcccc--cCCCChHHHHHHHHHHhCCChhH
Q 041843 202 DVCGG-----MEARRKFKVACLSDEDA-WELFREKVGEETI--ESHHSIPQLAQTVAKECGGLPLA 259 (800)
Q Consensus 202 ~~~~~-----~~~~~~~~l~~L~~~e~-~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~~g~Pla 259 (800)
..+-. .....++.+++...++- ..|+......-.. .+.-...+.+..|.+.++|+.=-
T Consensus 192 ~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 192 YRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred HHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH
Confidence 11110 11234667777765544 4444333221111 12223378899999999998633
No 145
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=4e-05 Score=76.50 Aligned_cols=175 Identities=17% Similarity=0.235 Sum_probs=105.4
Q ss_pred ccchhHHHHHHHHHhcc---C---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHH
Q 041843 64 VVGLQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 131 (800)
Q Consensus 64 ~vgr~~~~~~l~~~l~~---~---------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 131 (800)
+=|-++++++|.+...- + ..++=|.+||++|.|||-||++++++. ...| +.+..+ +
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS----E 220 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS----E 220 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH----H
Confidence 34678888888887532 1 356789999999999999999999987 3333 333221 1
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEccccch--------------------hhhhhcCCcC--
Q 041843 132 IQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLS-KKKFALLLDDLWER--------------------VDLKKIGVPL-- 188 (800)
Q Consensus 132 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~--------------------~~~~~~~~~~-- 188 (800)
+.+..+ + .+ ..+.+.+.+.-+ ..+..|++|.++.. +-+.++ --|
T Consensus 221 lVqKYi---G-EG--------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql-DGFD~ 287 (406)
T COG1222 221 LVQKYI---G-EG--------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL-DGFDP 287 (406)
T ss_pred HHHHHh---c-cc--------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc-cCCCC
Confidence 211111 1 01 223344444443 46799999998632 001111 111
Q ss_pred CCCcEEEEEeCCccccc-----ccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh----hH
Q 041843 189 PKNSAVVFTTRFVDVCG-----GMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP----LA 259 (800)
Q Consensus 189 ~~~s~iivTtR~~~~~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----la 259 (800)
....+||..|...+++. .-.-++.++++.-+.+.-.++|+-++.......+-+ .+.+++.+.|.- .|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHH
Confidence 22678999887555533 223467889997777778888988887766544434 445566666654 34
Q ss_pred HHHHHHHH
Q 041843 260 LIIIGRAM 267 (800)
Q Consensus 260 i~~~~~~l 267 (800)
+.+=|+++
T Consensus 364 ictEAGm~ 371 (406)
T COG1222 364 ICTEAGMF 371 (406)
T ss_pred HHHHHhHH
Confidence 44445443
No 146
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.06 E-value=2.9e-05 Score=78.57 Aligned_cols=151 Identities=13% Similarity=0.134 Sum_probs=79.0
Q ss_pred cccchhHHHHHHHHHhc---c-----------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccC
Q 041843 63 TVVGLQSQLEQVWRCLV---Q-----------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 128 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~---~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 128 (800)
.++|.+...++|.+... - .+....+.++|++|+||||+|+.+++..... +......++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH--
Confidence 47888877766654321 0 1245678999999999999999998875211 11111122333221
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch----------hhhhhcCCcCCC---CcEEE
Q 041843 129 LEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER----------VDLKKIGVPLPK---NSAVV 195 (800)
Q Consensus 129 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------~~~~~~~~~~~~---~s~ii 195 (800)
++.. .. .... ......+.+.. ..-+|++|++... ..++.+...... ...+|
T Consensus 84 --~l~~----~~-------~g~~-~~~~~~~~~~a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vi 147 (261)
T TIGR02881 84 --DLVG----EY-------IGHT-AQKTREVIKKA--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLI 147 (261)
T ss_pred --Hhhh----hh-------ccch-HHHHHHHHHhc--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEE
Confidence 1111 10 0111 11112222222 2348899999642 223333222222 33455
Q ss_pred EEeCCccc----------ccccCccceEEeccCChHHHHHHHHHHhCcc
Q 041843 196 FTTRFVDV----------CGGMEARRKFKVACLSDEDAWELFREKVGEE 234 (800)
Q Consensus 196 vTtR~~~~----------~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~ 234 (800)
+++...+. ... ....+.+++++.+|..+++.+.+...
T Consensus 148 la~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred ecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHHHHHHHHHHHc
Confidence 55543221 111 12468999999999999998887543
No 147
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.06 E-value=4.8e-05 Score=70.88 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=64.8
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
.++||-|+.++++.-...++ +.+-+.|.||+|+||||-+..+++... ....-+.+.-+++|...++.-+...|-....
T Consensus 27 ~dIVGNe~tv~rl~via~~g-nmP~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRGIDvVRn~IK~FAQ 104 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG-NMPNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDERGIDVVRNKIKMFAQ 104 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC-CCCceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCccccccHHHHHHHHHHHH
Confidence 46899999999987666655 889999999999999999999998872 1223345555555554444433333322211
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch
Q 041843 142 LYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER 178 (800)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~ 178 (800)
... ..-.++.-.+|||.+++.
T Consensus 105 ~kv----------------~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 105 KKV----------------TLPPGRHKIIILDEADSM 125 (333)
T ss_pred hhc----------------cCCCCceeEEEeeccchh
Confidence 100 001255678999999865
No 148
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.05 E-value=2.8e-05 Score=82.03 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=72.6
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
.++++.+..++.+...+... +.+.++|++|+|||++|+++++.. .....++.+.||.++...+..++...+.-. +
T Consensus 175 ~d~~i~e~~le~l~~~L~~~---~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~ 249 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK---KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-G 249 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC---CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCC-C
Confidence 45788899999999988865 688889999999999999999987 444577889999999888877665432110 0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh--cCCceEEEEccccch
Q 041843 142 LYTDSWKSKSLEEKAQDIFKTL--SKKKFALLLDDLWER 178 (800)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~ 178 (800)
. .-.......- +.+...- .++++++|+|++...
T Consensus 250 v-gy~~~~G~f~---~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 250 V-GFRRKDGIFY---NFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred C-CeEecCchHH---HHHHHHHhcccCCcEEEEehhhcc
Confidence 0 0000111111 1122221 246899999998643
No 149
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=5.1e-06 Score=57.23 Aligned_cols=38 Identities=29% Similarity=0.532 Sum_probs=18.7
Q ss_pred CCcEEEccCccccccccccccccccccEEeccCCCCccc
Q 041843 466 CLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGL 504 (800)
Q Consensus 466 ~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~l 504 (800)
+|++|++++| .+..+|..+++|++|++|++++|.|+.+
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 4555555555 4445554455555555555555555443
No 150
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.03 E-value=8e-05 Score=79.25 Aligned_cols=167 Identities=16% Similarity=0.194 Sum_probs=96.0
Q ss_pred cccchhHHHHHHHHHhcc---C---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 63 TVVGLQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~---~---------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
++.|.+...++|.+.+.- . ..++-+.++|++|+|||++|+++++.. ...| +.+.. .
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~------s 213 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVG------S 213 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEeh------H
Confidence 467888888888776531 1 245789999999999999999999986 2332 12211 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHhcCCceEEEEccccchh----------------hhhhcCCcC-----
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIF-KTLSKKKFALLLDDLWERV----------------DLKKIGVPL----- 188 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~~----- 188 (800)
.+ .... .... ......+. ......+.+|++|+++... .+..+...+
T Consensus 214 ~l----~~k~-------~ge~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 214 EF----VQKY-------LGEG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred HH----HHHh-------cchh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 11 1110 0111 11222222 2334578999999975320 011111111
Q ss_pred CCCcEEEEEeCCcccccc-----cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 189 PKNSAVVFTTRFVDVCGG-----MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 189 ~~~s~iivTtR~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
..+..||+||........ ...+..+.++..+.++..++|+.+........+-+ ..++++.+.|.-
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 125678888875544321 12345789999999999899987765444322222 455666676653
No 151
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.03 E-value=6.2e-05 Score=88.22 Aligned_cols=179 Identities=13% Similarity=0.134 Sum_probs=102.4
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccC--CC-CCCE-EEEEEEcCccCHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN--PT-DFDY-VIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~--~~-~f~~-~~wv~~~~~~~~~~~~~~i~ 137 (800)
..++||++++.++++.|... ...-+.++|++|+||||+|+.++++.... .. -... ++.++++.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~-~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l----------- 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR-RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL----------- 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC-CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh-----------
Confidence 46899999999999988776 45567799999999999999999987211 00 0112 222222210
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhc--CCceEEEEccccch---------hhhhh-cCCcCCCC-cEEEEEeCCcccc
Q 041843 138 KKIGLYTDSWKSKSLEEKAQDIFKTLS--KKKFALLLDDLWER---------VDLKK-IGVPLPKN-SAVVFTTRFVDVC 204 (800)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~---------~~~~~-~~~~~~~~-s~iivTtR~~~~~ 204 (800)
. .........++.++.+.+.+. +.+.+|++|++... .+... +...+..| -++|-||...+..
T Consensus 255 --~---ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 255 --Q---AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYK 329 (852)
T ss_pred --h---cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHh
Confidence 0 000012233444444444443 46899999998432 11111 22233444 4555555542221
Q ss_pred c-------ccCccceEEeccCChHHHHHHHHHHhCcccc-cCCCChHHHHHHHHHHhCCCh
Q 041843 205 G-------GMEARRKFKVACLSDEDAWELFREKVGEETI-ESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 205 ~-------~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 257 (800)
. .......+.+++++.+++.++++.....-.. ..-.-..++...+++.+.++.
T Consensus 330 ~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 1 1123458999999999999997544321110 000112667778888886543
No 152
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.01 E-value=8.3e-05 Score=86.61 Aligned_cols=153 Identities=15% Similarity=0.229 Sum_probs=91.0
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC--CCC-CEEEE-EEEcCccCHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP--TDF-DYVIW-VVVSKDLQLEKIQETIG 137 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~--~~f-~~~~w-v~~~~~~~~~~~~~~i~ 137 (800)
..++||++++.++.+.|... ...-+.++|++|+|||++|+.++++..... ..+ ...+| +++ .. +.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~-~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~------~~----l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR-KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM------GS----LL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC-CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH------HH----Hh
Confidence 36899999999999988765 455678999999999999999999873211 111 22333 221 11 11
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEccccch----------hhhhh-cCCcCCCCc-EEEEEeCCcccc
Q 041843 138 KKIGLYTDSWKSKSLEEKAQDIFKTLS-KKKFALLLDDLWER----------VDLKK-IGVPLPKNS-AVVFTTRFVDVC 204 (800)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~----------~~~~~-~~~~~~~~s-~iivTtR~~~~~ 204 (800)
.... .....++.++.+.+.+. .++.+|++|++... .+... +...+..|. ++|-+|...+..
T Consensus 251 a~~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 251 AGTK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYK 324 (731)
T ss_pred hhcc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHH
Confidence 1000 12344555555665553 46799999998522 11222 222233343 444444432210
Q ss_pred -------cccCccceEEeccCChHHHHHHHHHHh
Q 041843 205 -------GGMEARRKFKVACLSDEDAWELFREKV 231 (800)
Q Consensus 205 -------~~~~~~~~~~l~~L~~~e~~~l~~~~~ 231 (800)
........+.++.++.++..++++...
T Consensus 325 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 325 NHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 001123578999999999999998654
No 153
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.00 E-value=6.7e-05 Score=81.55 Aligned_cols=156 Identities=18% Similarity=0.218 Sum_probs=89.8
Q ss_pred CcccchhHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCC--CCCCEEEEEEEcCcc
Q 041843 62 PTVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP--TDFDYVIWVVVSKDL 127 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~--~~f~~~~wv~~~~~~ 127 (800)
.++.|.+.+++++.+.+.. -...+-+.++|++|+|||++|+++++...... .......|+.+....
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 3577899999998887531 02356799999999999999999999872110 012234455543321
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccchh---------h-----hhhcCCc-
Q 041843 128 QLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWERV---------D-----LKKIGVP- 187 (800)
Q Consensus 128 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~---------~-----~~~~~~~- 187 (800)
++... . ...+..++.+.+.. .+++++|+||+++... + +..+...
T Consensus 262 --------Ll~ky-------v-Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 262 --------LLNKY-------V-GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred --------hcccc-------c-chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 11000 0 01111222222222 3578999999996321 1 1122111
Q ss_pred --CC--CCcEEEEEeCCcccccc-----cCccceEEeccCChHHHHHHHHHHhCc
Q 041843 188 --LP--KNSAVVFTTRFVDVCGG-----MEARRKFKVACLSDEDAWELFREKVGE 233 (800)
Q Consensus 188 --~~--~~s~iivTtR~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~ 233 (800)
+. .+..||.||........ ...+..+.++..+.++..++|+.+...
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 11 24556667765443221 123456999999999999999988743
No 154
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=8.5e-07 Score=75.36 Aligned_cols=109 Identities=17% Similarity=0.298 Sum_probs=89.4
Q ss_pred ceEEEccccccCCCC----CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEec
Q 041843 421 GRRLSLMKNSIGNLP----TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDI 496 (800)
Q Consensus 421 l~~l~l~~~~~~~l~----~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L 496 (800)
+..++++++.+..++ .+....+|...++++|.++++|+.|-..++.+..|++++| .+..+|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence 344566666655444 2456678888999999999999998888889999999999 88999999999999999999
Q ss_pred cCCCCcccchhhhcCccCceecccccccccccchh
Q 041843 497 SYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQ 531 (800)
Q Consensus 497 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~ 531 (800)
+.|.+...|.-+..|.+|-.|+..++. ...+|..
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 999999999988889999999988764 4666655
No 155
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=0.0003 Score=72.96 Aligned_cols=153 Identities=10% Similarity=0.113 Sum_probs=86.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCC------------------CCEEEEEEEcCccCHHHHHHHHHHHhCCCC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD------------------FDYVIWVVVSKDLQLEKIQETIGKKIGLYT 144 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 144 (800)
-...+.++|+.|+|||++|+.++......... ..-..|+.-...
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~------------------ 82 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA------------------ 82 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC------------------
Confidence 35678899999999999999998887321100 001122211000
Q ss_pred CCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccch--hhhhhc---CCcCCCCcEEEEEeCCcc-cccc-cCccce
Q 041843 145 DSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTTRFVD-VCGG-MEARRK 212 (800)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~~---~~~~~~~s~iivTtR~~~-~~~~-~~~~~~ 212 (800)
.....+++.. .+.+.+ .+++-++|+|+++.. .....+ ...-++++.+|+||.+.. +... ......
T Consensus 83 --~~~i~id~iR-~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~ 159 (328)
T PRK05707 83 --DKTIKVDQVR-ELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQ 159 (328)
T ss_pred --CCCCCHHHHH-HHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhcee
Confidence 0011222222 222222 234445577999753 222222 222334677777776543 3322 234567
Q ss_pred EEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHH
Q 041843 213 FKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIII 263 (800)
Q Consensus 213 ~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 263 (800)
+.+.+++.+++.+.+........ .+.+..++..++|.|.....+
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~~~~-------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALPESD-------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred eeCCCcCHHHHHHHHHHhcccCC-------hHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999987642111 455677889999999765544
No 156
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.98 E-value=0.00018 Score=75.19 Aligned_cols=148 Identities=20% Similarity=0.204 Sum_probs=91.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC--EEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD--YVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIF 160 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 160 (800)
....+.|||+.|.|||.|++++.+.. ..... .++.++ .+....+++..+.. ...+.++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~------se~f~~~~v~a~~~-----------~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLT------SEDFTNDFVKALRD-----------NEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEecc------HHHHHHHHHHHHHh-----------hhHHHHH
Confidence 46799999999999999999999998 33343 344333 23344444443321 2234455
Q ss_pred HHhcCCceEEEEccccchh---h-hhhcC---Cc-CCCCcEEEEEeCCccc---------ccccCccceEEeccCChHHH
Q 041843 161 KTLSKKKFALLLDDLWERV---D-LKKIG---VP-LPKNSAVVFTTRFVDV---------CGGMEARRKFKVACLSDEDA 223 (800)
Q Consensus 161 ~~l~~~~~LlvlDdv~~~~---~-~~~~~---~~-~~~~s~iivTtR~~~~---------~~~~~~~~~~~l~~L~~~e~ 223 (800)
+.. .-=++++||++-.. . -+++. .. ...|..||+|++...- ...+...-++.+.+.+.+..
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 555 33488899985321 1 11111 11 2236689999974222 22334556899999999999
Q ss_pred HHHHHHHhCcccccCCCChHHHHHHHHHHhCC
Q 041843 224 WELFREKVGEETIESHHSIPQLAQTVAKECGG 255 (800)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 255 (800)
..++.+++.......+ +++..-|++....
T Consensus 250 ~aiL~kka~~~~~~i~---~ev~~~la~~~~~ 278 (408)
T COG0593 250 LAILRKKAEDRGIEIP---DEVLEFLAKRLDR 278 (408)
T ss_pred HHHHHHHHHhcCCCCC---HHHHHHHHHHhhc
Confidence 9999998866554444 5556666665544
No 157
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.98 E-value=0.0047 Score=64.57 Aligned_cols=199 Identities=18% Similarity=0.229 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCCEEEEEEEcC---ccCHHHHHHHHHHHhCC
Q 041843 67 LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLL-TQINNKFVDNPTDFDYVIWVVVSK---DLQLEKIQETIGKKIGL 142 (800)
Q Consensus 67 r~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~ 142 (800)
|.+.+++|..||... .-..|+|.||.|+||+.|+ .++.++. ..+..++|.+ ..+-..+...++.++|.
T Consensus 1 R~e~~~~L~~wL~e~-~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN-PNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcC-CCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 567889999999987 4579999999999999999 6665554 2277777654 23445556666666553
Q ss_pred CC----------------------CCCCCCCHHHHHHHHHHH----hc--------------------------CCceEE
Q 041843 143 YT----------------------DSWKSKSLEEKAQDIFKT----LS--------------------------KKKFAL 170 (800)
Q Consensus 143 ~~----------------------~~~~~~~~~~~~~~l~~~----l~--------------------------~~~~Ll 170 (800)
.. ...-..+.+..+..+.+. |+ .++-+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 21 001123333333322221 10 126789
Q ss_pred EEccccch-----------hhhhhcCCcCCCCcEEEEEeCCccccccc------CccceEEeccCChHHHHHHHHHHhCc
Q 041843 171 LLDDLWER-----------VDLKKIGVPLPKNSAVVFTTRFVDVCGGM------EARRKFKVACLSDEDAWELFREKVGE 233 (800)
Q Consensus 171 vlDdv~~~-----------~~~~~~~~~~~~~s~iivTtR~~~~~~~~------~~~~~~~l~~L~~~e~~~l~~~~~~~ 233 (800)
|+||+... .+|..... -..-.+||++|-+......+ .+.+.+.|.-.+.+-|.++...+...
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 99998432 12322211 11246788888765553322 24567899999999999999988754
Q ss_pred cccc------------CC-----CChHHHHHHHHHHhCCChhHHHHHHHHHhcCCCHH
Q 041843 234 ETIE------------SH-----HSIPQLAQTVAKECGGLPLALIIIGRAMAYKKTPE 274 (800)
Q Consensus 234 ~~~~------------~~-----~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~ 274 (800)
.... .+ ..........++..||==.=+..+++.++...++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 232 DTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 3100 00 12455667788888999889999999888765544
No 158
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.97 E-value=9.5e-07 Score=96.11 Aligned_cols=130 Identities=24% Similarity=0.409 Sum_probs=100.1
Q ss_pred cccccccceEEEccccccCCCCC-CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccccccccccccc
Q 041843 414 DVRGWEMGRRLSLMKNSIGNLPT-VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQ 492 (800)
Q Consensus 414 ~~~~~~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~ 492 (800)
.+..++++..+++.+|.+..+.. +..+++|++|++++|.++++.+ +..+..|+.|++++| .+..++ .+..+++|+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLK 165 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhcc-CCccchhhh
Confidence 35566788999999999999888 8889999999999999988876 678888999999999 777765 356689999
Q ss_pred EEeccCCCCcccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCC
Q 041843 493 LLDISYTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVG 550 (800)
Q Consensus 493 ~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 550 (800)
.+++++|.+..+... +..+.+|+.+.+.+|.. ..+.. +..+..+..+++..+.+.
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i-~~i~~--~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSI-REIEG--LDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCch-hcccc--hHHHHHHHHhhcccccce
Confidence 999999999888764 57888999999987643 33221 334444555555555554
No 159
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=0.0005 Score=71.32 Aligned_cols=201 Identities=16% Similarity=0.210 Sum_probs=119.5
Q ss_pred CCcccchhHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
+..++||+.+++.+.+++.. ....+.+.|.|-+|.|||.+...++.+.... ..-..++.+++..-....+++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~-~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKS-SKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhh-cccceeEEEeeccccchHHHHHHHH
Confidence 45689999999999999865 2467899999999999999999999987222 2223457777766566777777777
Q ss_pred HHhC-CCCCCCCCCCHHHHHHHHHHHhcCC--ceEEEEccccchhh-----hhh-cCCcCCCCcEEEEEe---------C
Q 041843 138 KKIG-LYTDSWKSKSLEEKAQDIFKTLSKK--KFALLLDDLWERVD-----LKK-IGVPLPKNSAVVFTT---------R 199 (800)
Q Consensus 138 ~~l~-~~~~~~~~~~~~~~~~~l~~~l~~~--~~LlvlDdv~~~~~-----~~~-~~~~~~~~s~iivTt---------R 199 (800)
..+. ... ......+....+.+...+. .+|+|+|..+.... +-. +.-+--.++++|+.- |
T Consensus 228 ~~~~q~~~---s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 228 SSLLQDLV---SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHhc---CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 7761 111 1112244455555555443 58999999864311 111 111111245544322 2
Q ss_pred Ccccccc--cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHh----CCChhHHHHHHHHH
Q 041843 200 FVDVCGG--MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKEC----GGLPLALIIIGRAM 267 (800)
Q Consensus 200 ~~~~~~~--~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~----~g~Plai~~~~~~l 267 (800)
.-.-+.. .-....+..+|++.++-.+++.++....... .....+++.+++++ |.+-.|+.+.-+++
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~--~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTS--IFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccccc--ccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1000111 1134578899999999999999987554321 11223344444444 44555555544443
No 160
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=1.4e-06 Score=83.83 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=41.1
Q ss_pred CcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecC--CCCCCChhhhcCCCCcEEEEecCcchhHhh
Q 041843 619 DLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNC--GNLKHLTFLVFAPNLKSISVRDCDDMEEII 695 (800)
Q Consensus 619 ~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c--~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~ 695 (800)
-++++..+.+..|+.-..-.. ...-.++.+.-|.|... ..+..+..+..+|.|..|.+++.+-.+.+.
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~e---------k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSE---------KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hcccchheeeecCcccchhhc---------ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 368888888888864321110 11123555556666543 233444557789999999999988655543
No 161
>CHL00181 cbbX CbbX; Provisional
Probab=97.89 E-value=0.00038 Score=70.96 Aligned_cols=153 Identities=11% Similarity=0.113 Sum_probs=80.2
Q ss_pred cccchhHHHHHHHHHhc--------c------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccC
Q 041843 63 TVVGLQSQLEQVWRCLV--------Q------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 128 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~--------~------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 128 (800)
.++|-+...++|.++.. . ......+.++|++|+||||+|+.+++.... .+.-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~--- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTR--- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecH---
Confidence 56787766665544421 1 112345889999999999999999887521 11111112444441
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch-----------hhhhhcCCc---CCCCcEE
Q 041843 129 LEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER-----------VDLKKIGVP---LPKNSAV 194 (800)
Q Consensus 129 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----------~~~~~~~~~---~~~~s~i 194 (800)
.++ ....... .... ...+.+.. ..-+|++|++... +....+... ...+.+|
T Consensus 100 -~~l----~~~~~g~-------~~~~-~~~~l~~a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~v 164 (287)
T CHL00181 100 -DDL----VGQYIGH-------TAPK-TKEVLKKA--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVV 164 (287)
T ss_pred -HHH----HHHHhcc-------chHH-HHHHHHHc--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEE
Confidence 122 2111110 1111 12222222 2348999998542 122222121 2234566
Q ss_pred EEEeCCcccccc------c--CccceEEeccCChHHHHHHHHHHhCcc
Q 041843 195 VFTTRFVDVCGG------M--EARRKFKVACLSDEDAWELFREKVGEE 234 (800)
Q Consensus 195 ivTtR~~~~~~~------~--~~~~~~~l~~L~~~e~~~l~~~~~~~~ 234 (800)
|+++........ + .....+.+++++.+|..+++...+...
T Consensus 165 I~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 165 IFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred EEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 666653222100 0 123578999999999999998887543
No 162
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.89 E-value=0.00027 Score=72.09 Aligned_cols=152 Identities=12% Similarity=0.084 Sum_probs=79.2
Q ss_pred cccchhHHHHHHHHHhc--------c----C--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccC
Q 041843 63 TVVGLQSQLEQVWRCLV--------Q----E--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 128 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~--------~----~--~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 128 (800)
.++|.++..++|.+... . . .....+.++|++|+|||++|+.++..... .+......|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH---
Confidence 46887776666654321 1 0 11236899999999999999888777622 11111112444432
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch-----------hhhhhcCCc---CCCCcEE
Q 041843 129 LEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER-----------VDLKKIGVP---LPKNSAV 194 (800)
Q Consensus 129 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----------~~~~~~~~~---~~~~s~i 194 (800)
.+ +...+.. ..... ...+.+.. ..-+|+||++... ..++.+... ...+.+|
T Consensus 99 -~~----l~~~~~g-------~~~~~-~~~~~~~a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~v 163 (284)
T TIGR02880 99 -DD----LVGQYIG-------HTAPK-TKEILKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVV 163 (284)
T ss_pred -HH----HhHhhcc-------cchHH-HHHHHHHc--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEE
Confidence 12 2211111 11111 22222222 2358899998622 112222111 1224566
Q ss_pred EEEeCCcccccc--c------CccceEEeccCChHHHHHHHHHHhCc
Q 041843 195 VFTTRFVDVCGG--M------EARRKFKVACLSDEDAWELFREKVGE 233 (800)
Q Consensus 195 ivTtR~~~~~~~--~------~~~~~~~l~~L~~~e~~~l~~~~~~~ 233 (800)
|+++.....-.. . .....+.+++++.+|..+++...+..
T Consensus 164 I~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 164 ILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 666643221110 0 11357899999999999999887744
No 163
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.0011 Score=63.62 Aligned_cols=189 Identities=14% Similarity=0.177 Sum_probs=106.6
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEc-CccCHHHHHHHHHHHhCCCCCCCC
Q 041843 70 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS-KDLQLEKIQETIGKKIGLYTDSWK 148 (800)
Q Consensus 70 ~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~ 148 (800)
.+..+...+.+ +.+++.++|.-|.|||.+++++.... ..-+... +.+. ...+...+...+...+........
T Consensus 39 ~l~~l~~~i~d--~qg~~~vtGevGsGKTv~~Ral~~s~----~~d~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~~~~ 111 (269)
T COG3267 39 ALLMLHAAIAD--GQGILAVTGEVGSGKTVLRRALLASL----NEDQVAV-VVIDKPTLSDATLLEAIVADLESQPKVNV 111 (269)
T ss_pred HHHHHHHHHhc--CCceEEEEecCCCchhHHHHHHHHhc----CCCceEE-EEecCcchhHHHHHHHHHHHhccCccchh
Confidence 33444433333 35699999999999999999666655 1222222 3333 345667777778777765211111
Q ss_pred CCCHHHHHHHHHHHh-cCCc-eEEEEccccch--hh---hhhcCCcCCCCc---EEEEEeCCccccc---------ccCc
Q 041843 149 SKSLEEKAQDIFKTL-SKKK-FALLLDDLWER--VD---LKKIGVPLPKNS---AVVFTTRFVDVCG---------GMEA 209 (800)
Q Consensus 149 ~~~~~~~~~~l~~~l-~~~~-~LlvlDdv~~~--~~---~~~~~~~~~~~s---~iivTtR~~~~~~---------~~~~ 209 (800)
....+...+.+.... ++++ +.+++|+..+. .. +..+...--+++ +|+..-. +.... .-..
T Consensus 112 ~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq-p~L~~~lr~~~l~e~~~R 190 (269)
T COG3267 112 NAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ-PKLRPRLRLPVLRELEQR 190 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC-cccchhhchHHHHhhhhe
Confidence 112222233333333 4566 99999998432 22 222221111111 2333222 11111 0011
Q ss_pred cce-EEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHH
Q 041843 210 RRK-FKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRA 266 (800)
Q Consensus 210 ~~~-~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 266 (800)
... |++.|++.++...+++.+........+--..+....|.....|.|.+|..++..
T Consensus 191 ~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 191 IDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred EEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 223 899999999999999888755432222223677888999999999999988753
No 164
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.7e-05 Score=54.58 Aligned_cols=41 Identities=34% Similarity=0.498 Sum_probs=33.2
Q ss_pred ccccEEeccCCCCcccchhhhcCccCceecccccccccccch
Q 041843 489 VSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQ 530 (800)
Q Consensus 489 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 530 (800)
++|++|++++|+|+.+|..+++|++|+.|++++|. +.++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 47899999999999999889999999999999885 566654
No 165
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=2.7e-05 Score=81.09 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=49.5
Q ss_pred ccccceEEEccccccCCCCCCCCCCcceEEEeecCC-CcccccccccCCCCCcEEEccCccccccccccccccccccEEe
Q 041843 417 GWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNP-LRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLD 495 (800)
Q Consensus 417 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~ 495 (800)
.+..+++|++++|.+..+|.++ ++|++|.+++|. ++.+|.. + ..+|++|++++|..+..+|. +|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccceEE
Confidence 3456778888888777777433 357888887654 4444432 2 24678888887766666664 355566
Q ss_pred ccCCC---Ccccchh
Q 041843 496 ISYTS---VTGLPEG 507 (800)
Q Consensus 496 L~~~~---i~~lp~~ 507 (800)
++++. +..+|.+
T Consensus 119 L~~n~~~~L~~LPss 133 (426)
T PRK15386 119 IKGSATDSIKNVPNG 133 (426)
T ss_pred eCCCCCcccccCcch
Confidence 65543 4456654
No 166
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00044 Score=73.82 Aligned_cols=167 Identities=16% Similarity=0.174 Sum_probs=96.4
Q ss_pred cccchhHHHHHHHHHhcc--C---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHH
Q 041843 63 TVVGLQSQLEQVWRCLVQ--E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 131 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~--~---------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 131 (800)
++=|.++.+.++.+.+.- . ..++-|.+|||+|+|||.||++++.+. . +-++.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~-----vPf~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---G-----VPFLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---C-----CceEeecch-----
Confidence 466899999998887632 1 245779999999999999999999987 2 223333322
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch----------------hh----hhhcCCc--CC
Q 041843 132 IQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER----------------VD----LKKIGVP--LP 189 (800)
Q Consensus 132 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~----~~~~~~~--~~ 189 (800)
+|+..+. ..+.+...+.+.+.-..-++++++|+++.. .+ .+.+... .+
T Consensus 258 ---eivSGvS-------GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 ---EIVSGVS-------GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ---hhhcccC-------cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 2332222 233333344444555678999999998632 00 1111111 12
Q ss_pred CCcEEEEEeCCccccc-----ccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCC
Q 041843 190 KNSAVVFTTRFVDVCG-----GMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGL 256 (800)
Q Consensus 190 ~~s~iivTtR~~~~~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 256 (800)
++..||-+|..++... .-..++.|.+.--++.+-.++++..+.+-....+-+ .++|++..-|.
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGF 395 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCc
Confidence 2333443443333322 112356788888888777778877665444332222 45666666654
No 167
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.80 E-value=0.00017 Score=85.10 Aligned_cols=177 Identities=19% Similarity=0.233 Sum_probs=100.0
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccC--CCCC-CEEEEEEEcCccCHHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN--PTDF-DYVIWVVVSKDLQLEKIQETIGK 138 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~--~~~f-~~~~wv~~~~~~~~~~~~~~i~~ 138 (800)
..++||+++++++.+.|... ...-+.++|++|+|||++|..++.+.... .... ...+|. + +... +..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~-~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~----l~a 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR-TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGL----LLA 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc-ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHH----Hhc
Confidence 35799999999999999875 34566799999999999999999987321 1111 233331 1 1111 111
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEccccch---------hhhhhcCCc-CCCC-cEEEEEeCCccccc-
Q 041843 139 KIGLYTDSWKSKSLEEKAQDIFKTLS-KKKFALLLDDLWER---------VDLKKIGVP-LPKN-SAVVFTTRFVDVCG- 205 (800)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~---------~~~~~~~~~-~~~~-s~iivTtR~~~~~~- 205 (800)
+. . .....++.+..+.+.+. .++.+|++|++... .+...+..+ +..| -++|.+|...+...
T Consensus 249 --g~---~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 249 --GT---K-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKH 322 (821)
T ss_pred --cC---C-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHH
Confidence 10 0 12344555555555543 46799999998422 112222222 2333 45555555433211
Q ss_pred ------ccCccceEEeccCChHHHHHHHHHHhCc--ccccCCCChHHHHHHHHHHhCC
Q 041843 206 ------GMEARRKFKVACLSDEDAWELFREKVGE--ETIESHHSIPQLAQTVAKECGG 255 (800)
Q Consensus 206 ------~~~~~~~~~l~~L~~~e~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g 255 (800)
.......+.+...+.+++..+++..... ...... -.+++...+++.+++
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~-i~deal~~i~~ls~~ 379 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLS-ISDKALEAAAKLSDQ 379 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhc
Confidence 1123356788899999998888654311 000000 125666777777654
No 168
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.80 E-value=0.00044 Score=76.98 Aligned_cols=169 Identities=15% Similarity=0.149 Sum_probs=94.9
Q ss_pred CcccchhHHHHHHHHHhc---c--------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 62 PTVVGLQSQLEQVWRCLV---Q--------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~---~--------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
.+++|.++..+++.+.+. . ....+-+.++|++|+|||++|++++... ...| +.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----H
Confidence 457898877766655432 1 1234569999999999999999999876 2222 22221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh----------------hhhhcCCc---C-C-
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV----------------DLKKIGVP---L-P- 189 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~---~-~- 189 (800)
++.... ...........+.......+.+|++||++... .+..+... + .
T Consensus 123 ~~~~~~-----------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVEMF-----------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHHHH-----------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 111110 01111222223333334577999999985421 01111111 1 1
Q ss_pred CCcEEEEEeCCccccc-----ccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 190 KNSAVVFTTRFVDVCG-----GMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 190 ~~s~iivTtR~~~~~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
.+..||.||..+.... ....+..+.++..+.++-.++++.+........ ......+++.+.|.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~----~~~l~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP----DVDLKAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc----chhHHHHHHhCCCCC
Confidence 1445666776543222 112356789999999999999988875443221 223557888887743
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.75 E-value=0.00047 Score=81.71 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=89.4
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC--C--CCCEEEEEEEcCccCHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP--T--DFDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~--~--~f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
..++||++++.++++.|... ....+.++|++|+|||++|..++.+..... . ....++.+++ ..+ .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~-~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l----~ 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR-TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GAL----I 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHH----h
Confidence 35899999999999998775 445667999999999999999999872210 0 1112222221 111 1
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhc--CCceEEEEccccchh---------hhhh-cCCcCCCC-cEEEEEeCCcccc
Q 041843 138 KKIGLYTDSWKSKSLEEKAQDIFKTLS--KKKFALLLDDLWERV---------DLKK-IGVPLPKN-SAVVFTTRFVDVC 204 (800)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~---------~~~~-~~~~~~~~-s~iivTtR~~~~~ 204 (800)
. +. ......+..+..+.+.+. +++.+|++|++.... +... +...+..| -++|-+|...+.-
T Consensus 242 a--~~----~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 242 A--GA----KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR 315 (852)
T ss_pred h--cc----hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHH
Confidence 0 00 011234445555555543 468999999985321 1222 22223333 3444444433321
Q ss_pred c-------ccCccceEEeccCChHHHHHHHHHHh
Q 041843 205 G-------GMEARRKFKVACLSDEDAWELFREKV 231 (800)
Q Consensus 205 ~-------~~~~~~~~~l~~L~~~e~~~l~~~~~ 231 (800)
. .......+.++..+.++..++++...
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 11233568899999999999987654
No 170
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.74 E-value=0.00025 Score=83.58 Aligned_cols=153 Identities=19% Similarity=0.224 Sum_probs=89.1
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC--C--CCCEEEEEEEcCccCHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP--T--DFDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~--~--~f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
..++||+.++.++++.|... ...-+.++|++|+|||++|+.++.+..... . ....+++++++. +.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~-~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~---- 246 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR-TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV---- 246 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC-CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh----
Confidence 45899999999999998776 455677999999999999999999873210 0 112233333221 11
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHh--cCCceEEEEccccchh---------hhhhc-CCcCCCC-cEEEEEeCCcccc
Q 041843 138 KKIGLYTDSWKSKSLEEKAQDIFKTL--SKKKFALLLDDLWERV---------DLKKI-GVPLPKN-SAVVFTTRFVDVC 204 (800)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~---------~~~~~-~~~~~~~-s~iivTtR~~~~~ 204 (800)
... ......++.++.+.+.+ .+.+.+|++|++.... +...+ ...+..| -++|-+|...+..
T Consensus 247 ag~------~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 247 AGA------KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320 (857)
T ss_pred hcc------chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHH
Confidence 000 01223344455444443 2468999999985321 12222 2223334 3455555443321
Q ss_pred -------cccCccceEEeccCChHHHHHHHHHHh
Q 041843 205 -------GGMEARRKFKVACLSDEDAWELFREKV 231 (800)
Q Consensus 205 -------~~~~~~~~~~l~~L~~~e~~~l~~~~~ 231 (800)
........+.+...+.++..++++...
T Consensus 321 ~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 011122366777779999999887654
No 171
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.74 E-value=0.00025 Score=81.50 Aligned_cols=153 Identities=19% Similarity=0.275 Sum_probs=89.6
Q ss_pred cccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCC---CCEEEEEEEcCccCHHHHHHHHHHH
Q 041843 63 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD---FDYVIWVVVSKDLQLEKIQETIGKK 139 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~ 139 (800)
.++||++++.++.+.|... ...-+.++|++|+|||++|+.+++........ .+..+|.. +... +..
T Consensus 187 ~liGR~~ei~~~i~iL~r~-~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----lla- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR-RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LLA- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc-CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hhc-
Confidence 5899999999999988875 34566789999999999999999876221111 12333311 1111 110
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEccccch----------hhhhhcCCc-CCCC-cEEEEEeCCccccc-
Q 041843 140 IGLYTDSWKSKSLEEKAQDIFKTLS-KKKFALLLDDLWER----------VDLKKIGVP-LPKN-SAVVFTTRFVDVCG- 205 (800)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~----------~~~~~~~~~-~~~~-s~iivTtR~~~~~~- 205 (800)
+. ....+.++..+.+.+.+. ..+.+|++|++... .+...+..+ +..| -++|-+|...+...
T Consensus 256 -G~----~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 256 -GT----KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNI 330 (758)
T ss_pred -cc----chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHH
Confidence 00 012234455555555443 45789999998532 122222222 2334 34444444333211
Q ss_pred ------ccCccceEEeccCChHHHHHHHHHHh
Q 041843 206 ------GMEARRKFKVACLSDEDAWELFREKV 231 (800)
Q Consensus 206 ------~~~~~~~~~l~~L~~~e~~~l~~~~~ 231 (800)
.......+.++..+.+++.++++...
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 01223579999999999999998654
No 172
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.73 E-value=0.00013 Score=66.39 Aligned_cols=88 Identities=22% Similarity=0.083 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
...+.|+|++|+||||+|+.++... ......++++..+........... .... ...............+.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL-LIIV---GGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH-hhhh---hccCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999987 232234666665543332222211 0000 01112223333444555555
Q ss_pred cCC-ceEEEEccccch
Q 041843 164 SKK-KFALLLDDLWER 178 (800)
Q Consensus 164 ~~~-~~LlvlDdv~~~ 178 (800)
... ..++++|++...
T Consensus 75 ~~~~~~viiiDei~~~ 90 (148)
T smart00382 75 RKLKPDVLILDEITSL 90 (148)
T ss_pred HhcCCCEEEEECCccc
Confidence 544 499999999754
No 173
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.73 E-value=5.9e-07 Score=96.54 Aligned_cols=114 Identities=27% Similarity=0.270 Sum_probs=69.6
Q ss_pred CccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccccccc
Q 041843 407 GLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGIS 486 (800)
Q Consensus 407 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~ 486 (800)
.+..+..++.-++.++.|++++|++.....+..|++|+.|+|++|.+..+|.-....++ |..|.+++| -+..+- .|.
T Consensus 175 ~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~-gie 251 (1096)
T KOG1859|consen 175 RLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTLR-GIE 251 (1096)
T ss_pred hHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhhh-hHH
Confidence 34444344555566677777777776666666677777777777776666643233344 777777776 555543 466
Q ss_pred ccccccEEeccCCCCcccc--hhhhcCccCceecccccc
Q 041843 487 KLVSLQLLDISYTSVTGLP--EGLKALVNLKCLNLDWAD 523 (800)
Q Consensus 487 ~L~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~l~~~~ 523 (800)
+|.+|+.||+++|-|.+.. ..++.|..|+.|.|.||.
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7777777777777554421 125566667777777664
No 174
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=5.5e-05 Score=69.27 Aligned_cols=100 Identities=24% Similarity=0.348 Sum_probs=71.7
Q ss_pred cceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccc--ccccccccccEEecc
Q 041843 420 MGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLP--TGISKLVSLQLLDIS 497 (800)
Q Consensus 420 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp--~~i~~L~~L~~L~L~ 497 (800)
....+++.+|.+..++.|+.++.|.+|.+.+|.++.+.+..-..+++|..|.|.+| .+.++- .-+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 45678888888888888888888899999888888888876566778888888888 555542 224567778888877
Q ss_pred CCCCcccchh----hhcCccCceeccc
Q 041843 498 YTSVTGLPEG----LKALVNLKCLNLD 520 (800)
Q Consensus 498 ~~~i~~lp~~----i~~l~~L~~L~l~ 520 (800)
+|.++..+.. +..+++|++||..
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehh
Confidence 7776654321 3445555555554
No 175
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.73 E-value=1.7e-05 Score=90.16 Aligned_cols=100 Identities=22% Similarity=0.314 Sum_probs=43.6
Q ss_pred cceEEEccccccC--CCC--CCCCCCcceEEEeecCCCcccc-cccccCCCCCcEEEccCccccccccccccccccccEE
Q 041843 420 MGRRLSLMKNSIG--NLP--TVPTCPHLLTLFLNDNPLRTIT-GGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLL 494 (800)
Q Consensus 420 ~l~~l~l~~~~~~--~l~--~~~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L 494 (800)
++++|++++...- ..| -...+|.|++|.+.+-.+..-. .....++++|+.||+|++ ++..+ ..|++|+||++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHH
Confidence 5666666554321 111 0233455555555543321111 111234555555555555 44444 345555555555
Q ss_pred eccCCCCcccc--hhhhcCccCceecccc
Q 041843 495 DISYTSVTGLP--EGLKALVNLKCLNLDW 521 (800)
Q Consensus 495 ~L~~~~i~~lp--~~i~~l~~L~~L~l~~ 521 (800)
.+++=.+..-. ..+.+|++|+.||++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 54444433311 2344455555555543
No 176
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=0.00011 Score=76.74 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=40.1
Q ss_pred ccCCCCCcEEEccCccccccccccccccccccEEeccCC-CCcccchhhhcCccCceecccccccccccch
Q 041843 461 FQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYT-SVTGLPEGLKALVNLKCLNLDWADELVEVPQ 530 (800)
Q Consensus 461 ~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 530 (800)
+..+.+++.|++++| .+..+|. -..+|+.|.+++| .++.+|..+ ..+|++|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 344577777777777 6777762 1235777777765 566666544 24677777777755555554
No 177
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.0012 Score=68.95 Aligned_cols=159 Identities=9% Similarity=0.014 Sum_probs=84.9
Q ss_pred cccc-hhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 63 TVVG-LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 63 ~~vg-r~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
.++| -+..++.+...+..+.-.....++|+.|+||||+|+.+++..... ....... +. .-..-+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~-~~~~~~~---cg----~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCL-ERNGVEP---CG----TCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCC-CCCCCCC---CC----cCHHHHHHhcCCC
Confidence 4567 677788888888776445677999999999999999998876211 1000000 00 0000000000000
Q ss_pred ----CCCCCCCCCCHHHHHHHHHHH-----hcCCceEEEEccccchh--h---hhhcCCcCCCCcEEEEEeCCcc-cccc
Q 041843 142 ----LYTDSWKSKSLEEKAQDIFKT-----LSKKKFALLLDDLWERV--D---LKKIGVPLPKNSAVVFTTRFVD-VCGG 206 (800)
Q Consensus 142 ----~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~--~---~~~~~~~~~~~s~iivTtR~~~-~~~~ 206 (800)
....+......++.. .+.+. ..+.+-++|+|+++... . +.......++++.+|++|.+.. +...
T Consensus 78 pD~~~i~~~~~~i~id~ir-~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~T 156 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIR-YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPT 156 (329)
T ss_pred CCEEEeccccccCCHHHHH-HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHH
Confidence 000000111122222 22222 23455679999986432 2 3333333445777777776433 2222
Q ss_pred -cCccceEEeccCChHHHHHHHHHH
Q 041843 207 -MEARRKFKVACLSDEDAWELFREK 230 (800)
Q Consensus 207 -~~~~~~~~l~~L~~~e~~~l~~~~ 230 (800)
......+++.+++.++..+.+.+.
T Consensus 157 IrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 157 ILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHhhceeeeCCCCCHHHHHHHHHHc
Confidence 234568999999999998888653
No 178
>PRK10536 hypothetical protein; Provisional
Probab=97.70 E-value=0.0011 Score=64.80 Aligned_cols=131 Identities=12% Similarity=0.114 Sum_probs=75.9
Q ss_pred cccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEc----C-----ccCHHH--
Q 041843 63 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS----K-----DLQLEK-- 131 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~----~-----~~~~~~-- 131 (800)
.+.+|......+..++.+. ..|.+.|++|+|||+||.+++.+... .+.|..++-..-. . +-+..+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~---~lV~i~G~aGTGKT~La~a~a~~~l~-~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK---QLIFATGEAGCGKTWISAAKAAEALI-HKDVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cccCCCHHHHHHHHHHhcC---CeEEEECCCCCCHHHHHHHHHHHHHh-cCCeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 4577888888888888764 59999999999999999999886411 2345544433211 0 111111
Q ss_pred --HHHHHHHHhCCCCCCCCCCCHHHHHH--------HHHHHhcCCc---eEEEEccccch--hhhhhcCCcCCCCcEEEE
Q 041843 132 --IQETIGKKIGLYTDSWKSKSLEEKAQ--------DIFKTLSKKK---FALLLDDLWER--VDLKKIGVPLPKNSAVVF 196 (800)
Q Consensus 132 --~~~~i~~~l~~~~~~~~~~~~~~~~~--------~l~~~l~~~~---~LlvlDdv~~~--~~~~~~~~~~~~~s~iiv 196 (800)
.+.-+...+.... .....+.... .-..+++|+. -+||+|++.+. .+...+....+.++++|+
T Consensus 132 ~p~~~pi~D~L~~~~---~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~ 208 (262)
T PRK10536 132 APYFRPVYDVLVRRL---GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIV 208 (262)
T ss_pred HHHHHHHHHHHHHHh---ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEE
Confidence 1122222221000 0001111100 0113456765 49999999654 566677777888999999
Q ss_pred EeCC
Q 041843 197 TTRF 200 (800)
Q Consensus 197 TtR~ 200 (800)
|--.
T Consensus 209 ~GD~ 212 (262)
T PRK10536 209 NGDI 212 (262)
T ss_pred eCCh
Confidence 8653
No 179
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.69 E-value=0.00067 Score=62.82 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=72.1
Q ss_pred chhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCC-----------------CCEEEEEEEcCc--
Q 041843 66 GLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD-----------------FDYVIWVVVSKD-- 126 (800)
Q Consensus 66 gr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~-----------------f~~~~wv~~~~~-- 126 (800)
|-++..+.+.+.+..+.-...+.++|+.|+||+++|.++++........ ..-+.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5677788888888877455678999999999999999998886321111 222333322211
Q ss_pred -cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hh---hhhcCCcCCCCcEEEEEeCC
Q 041843 127 -LQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VD---LKKIGVPLPKNSAVVFTTRF 200 (800)
Q Consensus 127 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~---~~~~~~~~~~~s~iivTtR~ 200 (800)
...+++. ++...+.... ..++.-++|+||++.. .. +.......+.++.+|++|++
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 1222222 2222222111 1245678999999754 22 23333334568888888886
Q ss_pred ccc-ccc-cCccceEEeccCC
Q 041843 201 VDV-CGG-MEARRKFKVACLS 219 (800)
Q Consensus 201 ~~~-~~~-~~~~~~~~l~~L~ 219 (800)
... ... ......+.+.+++
T Consensus 142 ~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTSEEEEE----
T ss_pred hHHChHHHHhhceEEecCCCC
Confidence 543 221 1233466666653
No 180
>CHL00176 ftsH cell division protein; Validated
Probab=97.69 E-value=0.00041 Score=78.28 Aligned_cols=167 Identities=15% Similarity=0.172 Sum_probs=96.7
Q ss_pred CcccchhHHHHHHHHHh---ccC--------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 62 PTVVGLQSQLEQVWRCL---VQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l---~~~--------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
.++.|.++..+++.+.+ ... ...+-|.++|++|+|||++|++++... ... |+.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccH----H
Confidence 45788887766665543 321 124579999999999999999999876 222 222221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh----------------hhhhcCCcC-----C
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV----------------DLKKIGVPL-----P 189 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~~-----~ 189 (800)
++.... ...........+.+.....+++|++||++... .+..+...+ .
T Consensus 251 ~f~~~~-----------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVEMF-----------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHHHh-----------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 111100 00111222233444445788999999995321 122222111 1
Q ss_pred CCcEEEEEeCCccccc-----ccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCC
Q 041843 190 KNSAVVFTTRFVDVCG-----GMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGG 255 (800)
Q Consensus 190 ~~s~iivTtR~~~~~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 255 (800)
.+..||.||....... ....+..+.++..+.++-.++++.++...... .......+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCC
Confidence 2556676776544322 11234678999999999999999887653321 13456778888877
No 181
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0021 Score=66.10 Aligned_cols=178 Identities=11% Similarity=0.059 Sum_probs=96.1
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCE--E--EEEEEcCccCHHHHHHHHHHHhC-CC
Q 041843 69 SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDY--V--IWVVVSKDLQLEKIQETIGKKIG-LY 143 (800)
Q Consensus 69 ~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~--~--~wv~~~~~~~~~~~~~~i~~~l~-~~ 143 (800)
...+++...+..+.-...+.++|+.|+||+++|..++.........-.. . -|+.....+++.. +. .+
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~--------i~~~p 82 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL--------VSFIP 82 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE--------EecCC
Confidence 3456666667666445679999999999999999998876221100000 0 0000000000000 00 00
Q ss_pred CCCC----CCCCHHHHHHHHHHHh-----cCCceEEEEccccchh--h---hhhcCCcCCCCcEEEEEeCC-cccccc-c
Q 041843 144 TDSW----KSKSLEEKAQDIFKTL-----SKKKFALLLDDLWERV--D---LKKIGVPLPKNSAVVFTTRF-VDVCGG-M 207 (800)
Q Consensus 144 ~~~~----~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~---~~~~~~~~~~~s~iivTtR~-~~~~~~-~ 207 (800)
.+.. ....+ +.++.+.+.+ .+++-++|+|+++... . +-+....-++++.+|++|.. ..+... .
T Consensus 83 ~~~~~k~~~~I~i-dqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr 161 (319)
T PRK08769 83 NRTGDKLRTEIVI-EQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIR 161 (319)
T ss_pred CcccccccccccH-HHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH
Confidence 0000 00112 2233333333 2456799999997542 2 22232333446666666654 333322 2
Q ss_pred CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHH
Q 041843 208 EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIG 264 (800)
Q Consensus 208 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 264 (800)
.....+.+.+++.+++.+.+... + .+ +..+..++..++|.|+....+.
T Consensus 162 SRCq~i~~~~~~~~~~~~~L~~~-~-----~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 162 SRCQRLEFKLPPAHEALAWLLAQ-G-----VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhheEeeCCCcCHHHHHHHHHHc-C-----CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 34567899999999999988653 1 11 3446788999999998665443
No 182
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.00023 Score=76.85 Aligned_cols=182 Identities=15% Similarity=0.170 Sum_probs=113.1
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC---CCCCEEEEEEEcCccCHHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDLQLEKIQETIGK 138 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~ 138 (800)
+++||.+..++.|...+..+.-.......|+.|+||||+|+-++...-... ..+...+-. -+.|..
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~-----------Ck~I~~ 84 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS-----------CKEINE 84 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh-----------hHhhhc
Confidence 568999999999999999875567788999999999999999988761111 111111111 112211
Q ss_pred H--hCC-CCCCCCCCCHHHHHHHHHHHh-----cCCceEEEEcccc--chhhhhhcCCcC---CCCcEEEEEeCCccc--
Q 041843 139 K--IGL-YTDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLW--ERVDLKKIGVPL---PKNSAVVFTTRFVDV-- 203 (800)
Q Consensus 139 ~--l~~-~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~--~~~~~~~~~~~~---~~~s~iivTtR~~~~-- 203 (800)
. +.. ..+......+++ ++.+.+.. .++--+.|+|+|- +...+..+...+ |.....|+.|++.+-
T Consensus 85 g~~~DviEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred CCcccchhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 1 000 000001112222 22333332 3566789999984 445566554443 336666666664332
Q ss_pred ccccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChh
Q 041843 204 CGGMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPL 258 (800)
Q Consensus 204 ~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 258 (800)
...+...+.|.+..++.++-...+...+..+.+..+ +++...|++..+|...
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCChh
Confidence 233455678999999999999999998877765544 6777788888877553
No 183
>PRK08116 hypothetical protein; Validated
Probab=97.67 E-value=0.00012 Score=73.83 Aligned_cols=97 Identities=25% Similarity=0.272 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLS 164 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 164 (800)
..+.|+|..|+|||.||.++++... .....++++++ .+++..+....... ...+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~~------~~ll~~i~~~~~~~----~~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVNF------PQLLNRIKSTYKSS----GKED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEH------HHHHHHHHHHHhcc----cccc----HHHHHHHhc
Confidence 4689999999999999999999982 22345666653 34455554443211 1111 223344455
Q ss_pred CCceEEEEccccc--hhhhh-----hcCCc-CCCCcEEEEEeC
Q 041843 165 KKKFALLLDDLWE--RVDLK-----KIGVP-LPKNSAVVFTTR 199 (800)
Q Consensus 165 ~~~~LlvlDdv~~--~~~~~-----~~~~~-~~~~s~iivTtR 199 (800)
+-. ||||||+.. ..+|. .+... ...+..+||||.
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 444 899999932 22221 11111 223667899987
No 184
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0025 Score=65.62 Aligned_cols=172 Identities=9% Similarity=0.051 Sum_probs=94.6
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCC---CCCEEE----EEEEcCccCHHHHHHHHHHHhCC
Q 041843 70 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT---DFDYVI----WVVVSKDLQLEKIQETIGKKIGL 142 (800)
Q Consensus 70 ~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~---~f~~~~----wv~~~~~~~~~~~~~~i~~~l~~ 142 (800)
..+++.+.+..+.-...+.++|+.|+||+++|++++........ .....+ ++.....+++..+
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---------- 79 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL---------- 79 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE----------
Confidence 44566677766644578889999999999999999887622110 000000 0000001110000
Q ss_pred CCCCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccch--hh---hhhcCCcCCCCcEEEEEeCCc-ccccc-cCcc
Q 041843 143 YTDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWER--VD---LKKIGVPLPKNSAVVFTTRFV-DVCGG-MEAR 210 (800)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~---~~~~~~~~~~~s~iivTtR~~-~~~~~-~~~~ 210 (800)
.........+++. +.+.+.+ .+++-++|+|+++.. .. +-+....-+++..+|++|.+. .+... ....
T Consensus 80 ~p~~~~~I~id~i-R~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 80 EPIDNKDIGVDQV-REINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred ccccCCCCCHHHH-HHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 0000011122222 2333333 356678889999754 22 222223334466666666543 34322 2345
Q ss_pred ceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHH
Q 041843 211 RKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLAL 260 (800)
Q Consensus 211 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 260 (800)
..+.+.+++.+++.+.+....... ...+...+..++|.|..+
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 689999999999999998764211 224667788999999644
No 185
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.63 E-value=9.3e-06 Score=80.43 Aligned_cols=160 Identities=21% Similarity=0.198 Sum_probs=112.2
Q ss_pred cccceEEEccccccCCC---------------CCCCCCCcceEEEeecCCCccccc----ccccCCCCCcEEEccCcccc
Q 041843 418 WEMGRRLSLMKNSIGNL---------------PTVPTCPHLLTLFLNDNPLRTITG----GFFQSMPCLTVLKMSDNIML 478 (800)
Q Consensus 418 ~~~l~~l~l~~~~~~~l---------------~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~Ls~~~~~ 478 (800)
...+.+|.+++|.+... .....-++||++....|.+..-+. ..|+..+.|+.+.++.|.+-
T Consensus 119 ~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~ 198 (382)
T KOG1909|consen 119 CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR 198 (382)
T ss_pred ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccccc
Confidence 34667778888876421 134566889999999998765443 34677889999999988322
Q ss_pred c----cccccccccccccEEeccCCCCcc-----cchhhhcCccCceecccccccccc----cchhhhCCCCCCcEEEee
Q 041843 479 R----QLPTGISKLVSLQLLDISYTSVTG-----LPEGLKALVNLKCLNLDWADELVE----VPQQLLSNFSRLRVLRMF 545 (800)
Q Consensus 479 ~----~lp~~i~~L~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~~----lp~~~~~~L~~L~~L~l~ 545 (800)
. .+-..+..+++|++|||+.|.++. +...++.+++|+.|++++|..-.. +-..+-...++|++|.+.
T Consensus 199 ~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~ 278 (382)
T KOG1909|consen 199 PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELA 278 (382)
T ss_pred CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccC
Confidence 1 234456789999999999997765 556678888999999999853221 112223457899999999
Q ss_pred ecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccc
Q 041843 546 ATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSF 582 (800)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 582 (800)
+|.+...... .....+...+.|..|++++|..
T Consensus 279 gNeIt~da~~-----~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 279 GNEITRDAAL-----ALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cchhHHHHHH-----HHHHHHhcchhhHHhcCCcccc
Confidence 9987653211 2344455688899999998887
No 186
>PRK12377 putative replication protein; Provisional
Probab=97.62 E-value=0.00069 Score=66.98 Aligned_cols=73 Identities=25% Similarity=0.298 Sum_probs=46.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
...+.|+|+.|+|||+||.++++... .....++++++. ++...+..... ...... .+.+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~------~~~~~~----~~l~~l 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYD------NGQSGE----KFLQEL 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHh------ccchHH----HHHHHh
Confidence 46899999999999999999999982 334445666553 44444443321 111111 233333
Q ss_pred cCCceEEEEcccc
Q 041843 164 SKKKFALLLDDLW 176 (800)
Q Consensus 164 ~~~~~LlvlDdv~ 176 (800)
.+--||||||+.
T Consensus 162 -~~~dLLiIDDlg 173 (248)
T PRK12377 162 -CKVDLLVLDEIG 173 (248)
T ss_pred -cCCCEEEEcCCC
Confidence 345699999993
No 187
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00049 Score=72.11 Aligned_cols=152 Identities=20% Similarity=0.175 Sum_probs=88.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHH----H
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQ----D 158 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~----~ 158 (800)
....+.++|++|+|||+||..++... .|..+--++...- ...+..+... .
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~m---------------------iG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPEDM---------------------IGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHHc---------------------cCccHHHHHHHHHHH
Confidence 46788999999999999999998765 5554433322111 1122222222 3
Q ss_pred HHHHhcCCceEEEEccccchhhhhhcCCcC----------------CCCcEE--EEEeCCcccccccC----ccceEEec
Q 041843 159 IFKTLSKKKFALLLDDLWERVDLKKIGVPL----------------PKNSAV--VFTTRFVDVCGGME----ARRKFKVA 216 (800)
Q Consensus 159 l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~----------------~~~s~i--ivTtR~~~~~~~~~----~~~~~~l~ 216 (800)
+.+.-++.--.||+||+....+|-.++..+ +.|.+. +-||....+.+.|+ ....|+++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 333445566899999998776666654432 225554 33666667766654 24578899
Q ss_pred cCCh-HHHHHHHHHHh-CcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHH
Q 041843 217 CLSD-EDAWELFREKV-GEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAM 267 (800)
Q Consensus 217 ~L~~-~e~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 267 (800)
.++. ++..+.+...- +. +.+.+..+.+...+| +-..|+.+-..+
T Consensus 671 nl~~~~~~~~vl~~~n~fs-----d~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNIFS-----DDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred ccCchHHHHHHHHHccCCC-----cchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 9887 77777776542 21 222344455555554 223344444433
No 188
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0029 Score=65.87 Aligned_cols=174 Identities=13% Similarity=0.091 Sum_probs=96.3
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCC---CCEEE----EEEEcCccCHHHHHHHHHHHhC
Q 041843 69 SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD---FDYVI----WVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 69 ~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~---f~~~~----wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
..-+++.+.+..+.-...+.++|+.|+||+++|.+++......... -...+ ++.....+++..+ .
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~ 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------T 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------e
Confidence 3456777777776556788899999999999999998876221110 00000 0000011110000 0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccch--hh----hhhcCCcCCCCcEEEEEeCC-cccccc-cC
Q 041843 142 LYTDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWER--VD----LKKIGVPLPKNSAVVFTTRF-VDVCGG-ME 208 (800)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~----~~~~~~~~~~~s~iivTtR~-~~~~~~-~~ 208 (800)
.... .....+++ ++.+.+.+ .+++-++|+|+++.. .. +..+..| ++++.+|++|.+ ..+... ..
T Consensus 81 p~~~-~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 81 PEKG-KSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP-PENTWFFLACREPARLLATLRS 157 (334)
T ss_pred cccc-cccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC-CCCeEEEEEECChhhChHHHHh
Confidence 0000 01112222 22333333 356679999998754 22 3333333 446666666654 334322 23
Q ss_pred ccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHH
Q 041843 209 ARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALI 261 (800)
Q Consensus 209 ~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 261 (800)
....+.+.+++.+++.+.+....+. + .+.+..++..++|.|....
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~~~-----~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREVTM-----S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHccCC-----C---HHHHHHHHHHcCCCHHHHH
Confidence 4567899999999999988654321 1 3447788999999996443
No 189
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.57 E-value=0.00049 Score=71.08 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=65.6
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCE-EEEEEEc-CccCHHHHHHHHHHHhCCCCCCC
Q 041843 70 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDY-VIWVVVS-KDLQLEKIQETIGKKIGLYTDSW 147 (800)
Q Consensus 70 ~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~ 147 (800)
...++++.+..-+..+.+.|+|++|+|||||++++++.... .+-+. ++|+-+. +...+.++.+.+...+.....+.
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~--~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA--NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh--cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 34557777765335578899999999999999999988721 12233 4665655 45578888888887665432111
Q ss_pred CCCC---HHHHHHHHHHHh--cCCceEEEEcccc
Q 041843 148 KSKS---LEEKAQDIFKTL--SKKKFALLLDDLW 176 (800)
Q Consensus 148 ~~~~---~~~~~~~l~~~l--~~~~~LlvlDdv~ 176 (800)
.... .......+.+++ .+++++||+|++.
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1111 111112222222 5899999999984
No 190
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.56 E-value=0.00038 Score=77.90 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=40.4
Q ss_pred CCcccchhHHHHHHHHHhccC----CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 61 EPTVVGLQSQLEQVWRCLVQE----PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~~----~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+++|.++.++++..++... ...++++|+|++|+||||+++.++...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999988652 234679999999999999999998876
No 191
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=5.3e-05 Score=86.11 Aligned_cols=137 Identities=21% Similarity=0.219 Sum_probs=85.8
Q ss_pred CcceEEEeecCCC--cccccccccCCCCCcEEEccCcccc-ccccccccccccccEEeccCCCCcccchhhhcCccCcee
Q 041843 441 PHLLTLFLNDNPL--RTITGGFFQSMPCLTVLKMSDNIML-RQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCL 517 (800)
Q Consensus 441 ~~L~~L~l~~~~l--~~~~~~~~~~l~~L~~L~Ls~~~~~-~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 517 (800)
.+|+.|+++|... .+.+...-..+|+|+.|.+++-... .++-.-..++++|..||+|++.++.+ .++++|+||+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 6788888888652 2333333455788999988875221 22333345788899999999988888 688888999888
Q ss_pred ccccccccc--ccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccch
Q 041843 518 NLDWADELV--EVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFE 583 (800)
Q Consensus 518 ~l~~~~~l~--~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 583 (800)
.+.+-..-. .+ .. +-+|++|++||++.........+.. ...+.-..|++|+.|+.+++.+.
T Consensus 201 ~mrnLe~e~~~~l-~~-LF~L~~L~vLDIS~~~~~~~~~ii~---qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDL-ID-LFNLKKLRVLDISRDKNNDDTKIIE---QYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhH-HH-HhcccCCCeeeccccccccchHHHH---HHHHhcccCccccEEecCCcchh
Confidence 887432211 11 12 5578888888887765544221000 12222335778888887766543
No 192
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0048 Score=63.39 Aligned_cols=162 Identities=13% Similarity=0.051 Sum_probs=93.9
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCC------------------CCCEEEEEEEcCccCHH
Q 041843 69 SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT------------------DFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 69 ~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~~~~~~~~ 130 (800)
...+++.+.+..+.-...+.++|+.|+||+++|+.++........ |-| ..|+.-..
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~----- 83 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEK----- 83 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCc-----
Confidence 345666666666645678999999999999999999887622111 111 11111100
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccch--hhhh---hcCCcCCCCcEEEEEeCC
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLK---KIGVPLPKNSAVVFTTRF 200 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~---~~~~~~~~~s~iivTtR~ 200 (800)
......+++. +.+.+.+ .+..-++|+|+++.. .... +....-++++.+|++|.+
T Consensus 84 ---------------~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 84 ---------------EGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred ---------------CCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 0011222222 2333333 245568899998754 2222 222333446666665554
Q ss_pred -cccccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHH
Q 041843 201 -VDVCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIII 263 (800)
Q Consensus 201 -~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 263 (800)
..+... ......+.+.+++.+++.+.+.... .+ ....+++.++|.|+....+
T Consensus 148 ~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~------~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 148 QKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG------IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC------Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 344332 2345688999999999999886531 11 2356789999999876544
No 193
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0032 Score=68.40 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=90.7
Q ss_pred cccchhHHHHHHHHHhcc-----------C-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 63 TVVGLQSQLEQVWRCLVQ-----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~-----------~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
++=|-|+...+|.+.+.- + ..++-|.++||+|+|||++|+++++.. ...|-.+ ..+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFlsv-----kgp---- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNFLSV-----KGP---- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCeeec-----cCH----
Confidence 333466655555544421 1 357889999999999999999999997 4555332 111
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchhh-------------hhhcCCc---CCC--Cc
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERVD-------------LKKIGVP---LPK--NS 192 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-------------~~~~~~~---~~~--~s 192 (800)
++... +...+.....+.+.+.=+--+.++.||.++.... +..+... +.. +.
T Consensus 503 ----EL~sk-------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 503 ----ELFSK-------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred ----HHHHH-------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 11110 1122222333333333334678999999864311 1111111 111 22
Q ss_pred EEEEEeCCccccc--cc---CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCC
Q 041843 193 AVVFTTRFVDVCG--GM---EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGL 256 (800)
Q Consensus 193 ~iivTtR~~~~~~--~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 256 (800)
.||-.|..+...+ .+ ..++.+.++.-+.+.-.++|+.++.......+-++ .+++++..|.
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl----~~La~~T~g~ 636 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDL----EELAQATEGY 636 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccH----HHHHHHhccC
Confidence 2333333233221 12 24567888888888889999999977765444343 4455555444
No 194
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.46 E-value=0.00038 Score=66.12 Aligned_cols=127 Identities=18% Similarity=0.220 Sum_probs=67.5
Q ss_pred chhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc--c-------CHHH----H
Q 041843 66 GLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD--L-------QLEK----I 132 (800)
Q Consensus 66 gr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~-------~~~~----~ 132 (800)
.+..+.....+.+.. ..++.+.|++|.|||.||.+.+-+... .+.++.++++.-.-+ . +..+ .
T Consensus 4 p~~~~Q~~~~~al~~---~~~v~~~G~AGTGKT~LA~a~Al~~v~-~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 4 PKNEEQKFALDALLN---NDLVIVNGPAGTGKTFLALAAALELVK-EGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp --SHHHHHHHHHHHH----SEEEEE--TTSSTTHHHHHHHHHHHH-TTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCCHHHHHHHHHHHh---CCeEEEECCCCCcHHHHHHHHHHHHHH-hCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 345556666677664 369999999999999999998877633 478888887753211 0 1000 1
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHH------HHHHhcCC---ceEEEEccccc--hhhhhhcCCcCCCCcEEEEEeC
Q 041843 133 QETIGKKIGLYTDSWKSKSLEEKAQD------IFKTLSKK---KFALLLDDLWE--RVDLKKIGVPLPKNSAVVFTTR 199 (800)
Q Consensus 133 ~~~i~~~l~~~~~~~~~~~~~~~~~~------l~~~l~~~---~~LlvlDdv~~--~~~~~~~~~~~~~~s~iivTtR 199 (800)
..-+...+.... .....+...+. -..+++|+ ...||+|++.+ ..++..+....+.+|++|++--
T Consensus 80 ~~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 80 LRPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGD 154 (205)
T ss_dssp THHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE-
T ss_pred HHHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEecC
Confidence 122222221111 11222222210 00123453 47999999965 4688888888899999999875
No 195
>PRK08181 transposase; Validated
Probab=97.45 E-value=0.00043 Score=69.33 Aligned_cols=71 Identities=24% Similarity=0.273 Sum_probs=44.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLS 164 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 164 (800)
..+.|+|++|+|||.||.++++... .....+.|+.+ .++...+.... ....... ..+.+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~~------~~L~~~l~~a~-------~~~~~~~----~l~~l~ 166 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTRT------TDLVQKLQVAR-------RELQLES----AIAKLD 166 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeeeH------HHHHHHHHHHH-------hCCcHHH----HHHHHh
Confidence 5699999999999999999998872 23344566553 44555554332 1112222 222232
Q ss_pred CCceEEEEcccc
Q 041843 165 KKKFALLLDDLW 176 (800)
Q Consensus 165 ~~~~LlvlDdv~ 176 (800)
+.=|||+||+.
T Consensus 167 -~~dLLIIDDlg 177 (269)
T PRK08181 167 -KFDLLILDDLA 177 (269)
T ss_pred -cCCEEEEeccc
Confidence 34599999984
No 196
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.45 E-value=0.00021 Score=63.93 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 041843 87 IGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 87 v~I~G~~GiGKTtLa~~~~~~~ 108 (800)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6799999999999999999997
No 197
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00058 Score=74.75 Aligned_cols=155 Identities=20% Similarity=0.246 Sum_probs=90.3
Q ss_pred CcccchhHHHHHHHHHhcc-----CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 136 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 136 (800)
.+=+|-++..++|+++|.- +-..++++++||+|+|||+|++.+++.. ...|-. +.+..-.+-.++--.=
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~RkfvR---~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFVR---ISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEEE---EecCccccHHHhcccc
Confidence 3458999999999999842 2245899999999999999999999988 444432 2333333333221111
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch---------hhhhhcCCc-----CCC--------CcEE
Q 041843 137 GKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER---------VDLKKIGVP-----LPK--------NSAV 194 (800)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---------~~~~~~~~~-----~~~--------~s~i 194 (800)
...++ .=+...++.+.+ .+.+.-+++||.++.. ..+-++.-| |.+ =|.|
T Consensus 397 RTYIG--------amPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 397 RTYIG--------AMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ccccc--------cCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 11111 111222222222 2456779999998632 112222222 211 2333
Q ss_pred E-EEe-CCcc-c-ccccCccceEEeccCChHHHHHHHHHHh
Q 041843 195 V-FTT-RFVD-V-CGGMEARRKFKVACLSDEDAWELFREKV 231 (800)
Q Consensus 195 i-vTt-R~~~-~-~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 231 (800)
+ ||| .+-+ + ...+....++++.+.+++|-.++-+++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3 333 3222 1 2233556799999999999999888775
No 198
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00071 Score=71.03 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=35.6
Q ss_pred cccchhH---HHHHHHHHhccC-------C-CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 63 TVVGLQS---QLEQVWRCLVQE-------P-AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 63 ~~vgr~~---~~~~l~~~l~~~-------~-~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.-|.|+ ++++|+++|.+. + =++-|.++||+|.|||-||++++-+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4567665 566777777762 2 25679999999999999999998886
No 199
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.44 E-value=0.0017 Score=69.50 Aligned_cols=135 Identities=18% Similarity=0.173 Sum_probs=81.9
Q ss_pred chhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHhCCCC
Q 041843 66 GLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKIGLYT 144 (800)
Q Consensus 66 gr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~ 144 (800)
.|..-+.++.+.+...+. ++.|.|+.++||||+++.+.... .+. .+++...+.. +..++ .+.
T Consensus 21 ~~~~~~~~l~~~~~~~~~--i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-~d~-------- 83 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF--IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-LDL-------- 83 (398)
T ss_pred hHHhhhHHHHhhcccCCc--EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH-HHH--------
Confidence 344555555555555422 99999999999999998777665 222 4554432211 11111 111
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCceEEEEccccchhhhhhcCCcCCCCc--EEEEEeCCcccc-----cc-cCccceEEec
Q 041843 145 DSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPKNS--AVVFTTRFVDVC-----GG-MEARRKFKVA 216 (800)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~s--~iivTtR~~~~~-----~~-~~~~~~~~l~ 216 (800)
...+...-..++.+++||.|....+|......+-+.. +|++|+-+.... .. .+....+.+-
T Consensus 84 -----------~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~ 152 (398)
T COG1373 84 -----------LRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELY 152 (398)
T ss_pred -----------HHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEEC
Confidence 1111111112778999999999988887655544422 678877754442 11 2345678999
Q ss_pred cCChHHHHHHHH
Q 041843 217 CLSDEDAWELFR 228 (800)
Q Consensus 217 ~L~~~e~~~l~~ 228 (800)
||+..|-..+-.
T Consensus 153 PlSF~Efl~~~~ 164 (398)
T COG1373 153 PLSFREFLKLKG 164 (398)
T ss_pred CCCHHHHHhhcc
Confidence 999999877643
No 200
>PRK08118 topology modulation protein; Reviewed
Probab=97.44 E-value=0.00035 Score=65.06 Aligned_cols=36 Identities=36% Similarity=0.541 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEE
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIW 120 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~w 120 (800)
+.|.|+|++|+||||+|+.+++...-..-+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999997333356777776
No 201
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.43 E-value=0.0039 Score=59.60 Aligned_cols=167 Identities=14% Similarity=0.209 Sum_probs=100.4
Q ss_pred CcccchhHHHHH---HHHHhcc-----CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHH
Q 041843 62 PTVVGLQSQLEQ---VWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQ 133 (800)
Q Consensus 62 ~~~vgr~~~~~~---l~~~l~~-----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 133 (800)
.++||.++...+ |.++|.+ +-.++-|..+|++|.|||-+|+++++.. +-.| +.+. ..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vk-------at 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVK-------AT 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEec-------hH
Confidence 457888876543 4455654 2467899999999999999999999987 2222 1221 11
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEccccch--------------hhhhhcCC-----cCCCCcE
Q 041843 134 ETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-SKKKFALLLDDLWER--------------VDLKKIGV-----PLPKNSA 193 (800)
Q Consensus 134 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~--------------~~~~~~~~-----~~~~~s~ 193 (800)
.-|.+.+ .+-...+..+.++- +.-++++.+|.++.. +.+.++.. .-+.|..
T Consensus 186 ~liGehV---------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 186 ELIGEHV---------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHHh---------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 1222222 12234444555544 346899999998632 11112211 1123777
Q ss_pred EEEEeCCccccccc---CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCC
Q 041843 194 VVFTTRFVDVCGGM---EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGL 256 (800)
Q Consensus 194 iivTtR~~~~~~~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 256 (800)
.|-.|..+..++.. .....++..--+++|-.+++..++.....+.+.. .+.++.+.+|.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 77777766665432 1234677788889999999998886655443322 55666667665
No 202
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.43 E-value=0.0022 Score=75.24 Aligned_cols=168 Identities=17% Similarity=0.199 Sum_probs=96.1
Q ss_pred CcccchhHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 129 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 129 (800)
.++.|.+...+++.+.+.- -...+-+.++|++|+|||++|+++++.. ...| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~~--- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRGP--- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEehH---
Confidence 3467888887777766531 1234568999999999999999999987 3332 222211
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCceEEEEccccchh--------------hhhhcCCcC-----C
Q 041843 130 EKIQETIGKKIGLYTDSWKSKSLEEKAQDIFK-TLSKKKFALLLDDLWERV--------------DLKKIGVPL-----P 189 (800)
Q Consensus 130 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~--------------~~~~~~~~~-----~ 189 (800)
++.... ...+ +..+..+.+ .-...+.+|++|+++... .+..+...+ .
T Consensus 522 -----~l~~~~-------vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 522 -----EILSKW-------VGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred -----HHhhcc-------cCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 111110 1112 223333333 334567999999985321 011111111 1
Q ss_pred CCcEEEEEeCCcccccc-----cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 190 KNSAVVFTTRFVDVCGG-----MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 190 ~~s~iivTtR~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
.+..||.||..+..... -..+..+.++..+.++-.++|+.+........+. ....+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~----~l~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV----DLEELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC----CHHHHHHHcCCCC
Confidence 24556667765544321 1235678899999999999998776544322222 2456777777754
No 203
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0016 Score=64.24 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcc-cCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFV-DNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT 162 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 162 (800)
-++|.++||+|.|||+|++++++... +..+.|....-+.+....-..+- .+ + ...-+..+.+++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKW-------Fs-E----SgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKW-------FS-E----SGKLVAKMFQKIQEL 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHH-------Hh-h----hhhHHHHHHHHHHHH
Confidence 48899999999999999999999872 22334444444443321111111 00 0 223344555666666
Q ss_pred hcCCc--eEEEEccccc
Q 041843 163 LSKKK--FALLLDDLWE 177 (800)
Q Consensus 163 l~~~~--~LlvlDdv~~ 177 (800)
+.++. +.+.+|.|..
T Consensus 245 v~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVES 261 (423)
T ss_pred HhCCCcEEEEEeHHHHH
Confidence 66655 5556799853
No 204
>PRK07261 topology modulation protein; Provisional
Probab=97.39 E-value=0.0005 Score=64.38 Aligned_cols=67 Identities=21% Similarity=0.390 Sum_probs=42.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSK 165 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 165 (800)
.|.|+|++|+||||||+++.....-..-+.|...|-.. ....+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 58999999999999999998775111224444555211 1222344555566666666
Q ss_pred CceEEEEccccc
Q 041843 166 KKFALLLDDLWE 177 (800)
Q Consensus 166 ~~~LlvlDdv~~ 177 (800)
.+ .|+|+...
T Consensus 59 ~~--wIidg~~~ 68 (171)
T PRK07261 59 HD--WIIDGNYS 68 (171)
T ss_pred CC--EEEcCcch
Confidence 56 67788643
No 205
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.35 E-value=0.0039 Score=63.81 Aligned_cols=145 Identities=13% Similarity=0.170 Sum_probs=80.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT 162 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 162 (800)
.+..++|||++|+|||.+|++++... ...| +.++.. +|... -..+.+..++.+.+.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el---g~~~-----i~vsa~--------eL~sk--------~vGEsEk~IR~~F~~ 202 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM---GIEP-----IVMSAG--------ELESE--------NAGEPGKLIRQRYRE 202 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc---CCCe-----EEEEHH--------HhhcC--------cCCcHHHHHHHHHHH
Confidence 56899999999999999999999997 3332 222211 11110 111122222222221
Q ss_pred ------hcCCceEEEEccccch------------hhh--hhcC----C-------------cCCCCcEEEEEeCCccccc
Q 041843 163 ------LSKKKFALLLDDLWER------------VDL--KKIG----V-------------PLPKNSAVVFTTRFVDVCG 205 (800)
Q Consensus 163 ------l~~~~~LlvlDdv~~~------------~~~--~~~~----~-------------~~~~~s~iivTtR~~~~~~ 205 (800)
-++++++|++|+++.. .+. ..+. . .-..+..||+||.++....
T Consensus 203 A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LD 282 (413)
T PLN00020 203 AADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLY 282 (413)
T ss_pred HHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCC
Confidence 1468999999998521 001 1111 0 0122567888887665532
Q ss_pred c--cC---ccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChh
Q 041843 206 G--ME---ARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPL 258 (800)
Q Consensus 206 ~--~~---~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 258 (800)
. .. -+..| ..-+.++-.++++.+....... .....++++...|-|+
T Consensus 283 pALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-----~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 283 APLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-----REDVVKLVDTFPGQPL 333 (413)
T ss_pred HhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-----HHHHHHHHHcCCCCCc
Confidence 1 11 12233 3456677777887776554321 4566777777777764
No 206
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.35 E-value=0.0071 Score=66.24 Aligned_cols=198 Identities=18% Similarity=0.179 Sum_probs=120.8
Q ss_pred CcccchhHHHHHHHHHhcc---C-CCceEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCCCEEEEEEEcCccCHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ---E-PAAGIIGLYGMGGVGKTTLLTQINNKFV-----DNPTDFDYVIWVVVSKDLQLEKI 132 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~---~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~-----~~~~~f~~~~wv~~~~~~~~~~~ 132 (800)
..+-+||.+..+|..++.. + +....+.|.|-+|.|||+.+..|.+... ..-..|+ .+.|+.-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 3466899999999988753 2 3456999999999999999999988652 1123444 345565666679999
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc-----CCceEEEEccccch----hh-hhhcCC-cCCCCcEEEEEeC--
Q 041843 133 QETIGKKIGLYTDSWKSKSLEEKAQDIFKTLS-----KKKFALLLDDLWER----VD-LKKIGV-PLPKNSAVVFTTR-- 199 (800)
Q Consensus 133 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlvlDdv~~~----~~-~~~~~~-~~~~~s~iivTtR-- 199 (800)
+..|..++.... ......+..+..++. .++.++++|+++.. ++ +-.+.. +-.++++++|-+=
T Consensus 475 Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 475 YEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 999999987532 333444555555543 35689999998533 11 222211 2223676555432
Q ss_pred Cccc---------ccccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHH
Q 041843 200 FVDV---------CGGMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRA 266 (800)
Q Consensus 200 ~~~~---------~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 266 (800)
.... ...+ ....+..++.+.++-.++...+......-.....+=++++|+.-.|..-.|+.+.-++
T Consensus 550 TmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred cccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 1111 1111 2346788999999999998887744321122223444555555555555555554443
No 207
>PRK04296 thymidine kinase; Provisional
Probab=97.35 E-value=0.00033 Score=66.93 Aligned_cols=113 Identities=16% Similarity=0.060 Sum_probs=65.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLS 164 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 164 (800)
.++.|+|+.|.||||+|..++.+. ......++.+. ..++.+.....++.+++...+........+..+.+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~---~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY---EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH---HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 578899999999999999999887 23334444442 1112222233445555432221112334455555544 33
Q ss_pred CCceEEEEccccc--hhhhhhcCCc-CCCCcEEEEEeCCccc
Q 041843 165 KKKFALLLDDLWE--RVDLKKIGVP-LPKNSAVVFTTRFVDV 203 (800)
Q Consensus 165 ~~~~LlvlDdv~~--~~~~~~~~~~-~~~~s~iivTtR~~~~ 203 (800)
++.-+||+|.+.- .+++.++... -+.|..||+|.++...
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 4556999999853 2334444333 2348899999986443
No 208
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0014 Score=70.01 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=86.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT 162 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 162 (800)
.+.-|.+|||+|+|||-||+++++.. ...|- .+..+ +++... ...+.......+++.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NFi-----sVKGP----ELlNkY-----------VGESErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANFI-----SVKGP----ELLNKY-----------VGESERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCceE-----eecCH----HHHHHH-----------hhhHHHHHHHHHHHh
Confidence 45678999999999999999999997 45553 33222 111111 112222222333333
Q ss_pred hcCCceEEEEccccchh-------------hhhhcCCc---CC--CCcEEEEEeCCcccccc-----cCccceEEeccCC
Q 041843 163 LSKKKFALLLDDLWERV-------------DLKKIGVP---LP--KNSAVVFTTRFVDVCGG-----MEARRKFKVACLS 219 (800)
Q Consensus 163 l~~~~~LlvlDdv~~~~-------------~~~~~~~~---~~--~~s~iivTtR~~~~~~~-----~~~~~~~~l~~L~ 219 (800)
=..-+++|+||.++... .+.++.-. +. .|.-||-.|..+++.+. -.-+...-++.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 34678999999986431 11222111 11 15667777765555332 1234567788888
Q ss_pred hHHHHHHHHHHhC--cccccCCCChHHHHHHHHHHhCCCh
Q 041843 220 DEDAWELFREKVG--EETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 220 ~~e~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
.+|-.++++.... +.....+-+++++++. .+|.|.-
T Consensus 681 ~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 681 AEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 9999999998886 3333444455555442 3455553
No 209
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.34 E-value=0.005 Score=62.22 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=35.9
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHH
Q 041843 69 SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 132 (800)
Q Consensus 69 ~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 132 (800)
..++++..++..+ ..|.|+|++|+|||++|++++... .. ..+++++.......++
T Consensus 9 ~l~~~~l~~l~~g---~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKSG---YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhcC---CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHH
Confidence 3445555555544 567799999999999999998754 22 2345555554444443
No 210
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.32 E-value=0.0031 Score=68.86 Aligned_cols=170 Identities=16% Similarity=0.131 Sum_probs=92.3
Q ss_pred CcccchhHHHHHHHHHh---cc-----C-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHH
Q 041843 62 PTVVGLQSQLEQVWRCL---VQ-----E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 132 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l---~~-----~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 132 (800)
.++.|.+...+.+.+.. .. + ...+-|.++|++|+|||.+|+++++.. ...| +-++++. +
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~~------l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVGK------L 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhHH------h
Confidence 35678776666665431 11 1 245779999999999999999999987 2222 1222211 1
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCceEEEEccccchhh--------------hhhcCCc---CCCCcEE
Q 041843 133 QETIGKKIGLYTDSWKSKSLEEKAQDIFKT-LSKKKFALLLDDLWERVD--------------LKKIGVP---LPKNSAV 194 (800)
Q Consensus 133 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~--------------~~~~~~~---~~~~s~i 194 (800)
... ....+ +...+.+.+. -...+++|++|+++.... +..+... ...+..|
T Consensus 296 ----~~~-------~vGes-e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 296 ----FGG-------IVGES-ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred ----ccc-------ccChH-HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 100 01111 2222222222 235789999999863210 1111111 1124456
Q ss_pred EEEeCCcccc-----cccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 195 VFTTRFVDVC-----GGMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 195 ivTtR~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
|.||...... ..-..+..+.++.-+.++-.++|+.+......... .......+++.+.|.-
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~--~~~dl~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSW--KKYDIKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcc--cccCHHHHHhhcCCCC
Confidence 6677654332 11133567889999999999999888755321110 0223566777776654
No 211
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.32 E-value=0.0021 Score=63.92 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=101.0
Q ss_pred CcccchhHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHH-HHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK-IQETIG 137 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-~~~~i~ 137 (800)
..++|-.++.+++.+++.. .+...-|.|+||.|.|||+|......+. +...+..+-|........++ .++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHH
Confidence 4689999999999988875 2456788999999999999998887775 34444455555555443322 355555
Q ss_pred HHhCCCCC--CCCCCCHHHHHHHHHHHhcC------CceEEEEccccchhh----------hhhcCCcCCCCcEEEEEeC
Q 041843 138 KKIGLYTD--SWKSKSLEEKAQDIFKTLSK------KKFALLLDDLWERVD----------LKKIGVPLPKNSAVVFTTR 199 (800)
Q Consensus 138 ~~l~~~~~--~~~~~~~~~~~~~l~~~l~~------~~~LlvlDdv~~~~~----------~~~~~~~~~~~s~iivTtR 199 (800)
+++...-. .....+..+....+...|+. -++.+|+|+++-... ++.-...-.+-+.|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 55533211 11334555666677777643 358999988763210 1111111122456778998
Q ss_pred Cccc-------ccccCccceEEeccCChHHHHHHHHHHh
Q 041843 200 FVDV-------CGGMEARRKFKVACLSDEDAWELFREKV 231 (800)
Q Consensus 200 ~~~~-------~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 231 (800)
-... -.......++-++.++-++-.+++++..
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 4322 2222222355667777778777777665
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.31 E-value=0.0012 Score=65.00 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=52.1
Q ss_pred HHHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCC
Q 041843 70 QLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWK 148 (800)
Q Consensus 70 ~~~~l~~~l~~~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 148 (800)
.+..+.++.... .....+.++|.+|+|||+||.++++.. ......+++++ ..++...+..... . .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l---~~~g~~v~~it------~~~l~~~l~~~~~--~---~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNEL---LLRGKSVLIIT------VADIMSAMKDTFS--N---S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEE------HHHHHHHHHHHHh--h---c
Confidence 445555554432 234579999999999999999999987 23345566664 3445544443321 0 1
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEcccc
Q 041843 149 SKSLEEKAQDIFKTLSKKKFALLLDDLW 176 (800)
Q Consensus 149 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~ 176 (800)
.... ..+.+.+. +.=+||+||+.
T Consensus 150 ~~~~----~~~l~~l~-~~dlLvIDDig 172 (244)
T PRK07952 150 ETSE----EQLLNDLS-NVDLLVIDEIG 172 (244)
T ss_pred cccH----HHHHHHhc-cCCEEEEeCCC
Confidence 1112 22334454 34488889984
No 213
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0043 Score=59.09 Aligned_cols=161 Identities=16% Similarity=0.192 Sum_probs=89.1
Q ss_pred cccchhHHHHHHHHHhcc---------C---CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 63 TVVGLQSQLEQVWRCLVQ---------E---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~---------~---~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
++=|-+++++++++++.- + ..++-|.++||+|.|||-+|++.+... ..-|-.
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFLK------------- 235 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFLK------------- 235 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHHH-------------
Confidence 456788999999888631 0 346778999999999999999998775 222211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEccccch--------------------hhhhhcCCcC-
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-SKKKFALLLDDLWER--------------------VDLKKIGVPL- 188 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~--------------------~~~~~~~~~~- 188 (800)
+..--+-|+-+ ... ..+.+.-...- ...+.+|++|.++.. +-+.++-.-.
T Consensus 236 -LAgPQLVQMfI------GdG-AkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss 307 (424)
T KOG0652|consen 236 -LAGPQLVQMFI------GDG-AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS 307 (424)
T ss_pred -hcchHHHhhhh------cch-HHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC
Confidence 00000111100 011 11222222222 356789999987521 0122221111
Q ss_pred CCCcEEEEEeCCcccc-----cccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHH
Q 041843 189 PKNSAVVFTTRFVDVC-----GGMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQ 247 (800)
Q Consensus 189 ~~~s~iivTtR~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 247 (800)
....+||-.|....+. .+-.-++.++.+--+++.-.++++-+........+-.++++++
T Consensus 308 ~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaR 371 (424)
T KOG0652|consen 308 DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELAR 371 (424)
T ss_pred ccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhh
Confidence 1266788777644443 2223345677776666666677777776666555555555554
No 214
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.29 E-value=0.00057 Score=74.61 Aligned_cols=74 Identities=24% Similarity=0.323 Sum_probs=56.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 041843 82 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFK 161 (800)
Q Consensus 82 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 161 (800)
+..+++.++|++|+||||||.-+++.. . -.++-|++|.......+-..|...+....
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa-----G-YsVvEINASDeRt~~~v~~kI~~avq~~s----------------- 380 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA-----G-YSVVEINASDERTAPMVKEKIENAVQNHS----------------- 380 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc-----C-ceEEEecccccccHHHHHHHHHHHHhhcc-----------------
Confidence 356899999999999999999998875 2 35778888888888777777776654322
Q ss_pred Hh--cCCceEEEEccccch
Q 041843 162 TL--SKKKFALLLDDLWER 178 (800)
Q Consensus 162 ~l--~~~~~LlvlDdv~~~ 178 (800)
.+ .+++.-||+|.++..
T Consensus 381 ~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred ccccCCCcceEEEecccCC
Confidence 12 268899999999754
No 215
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.27 E-value=0.0032 Score=73.78 Aligned_cols=169 Identities=17% Similarity=0.154 Sum_probs=93.7
Q ss_pred cccchhHHHHHHHHHhcc---C---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 63 TVVGLQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~---~---------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
++.|.++.++++.+.+.- . ...+.+.|+|++|+|||++|+++++.. ...| +.++.+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------
Confidence 478999999998877631 0 234678999999999999999999886 2222 222221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh----------------hhhhcCCcCCC-CcE
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV----------------DLKKIGVPLPK-NSA 193 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~~~~-~s~ 193 (800)
++ .... ...........+.......+.+|++|+++... ++-.+...+.. +..
T Consensus 247 ~i----~~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EI----MSKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HH----hccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 11 0000 11111222223333345567899999985320 11111111222 334
Q ss_pred EEE-EeCCccccc-cc----CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChh
Q 041843 194 VVF-TTRFVDVCG-GM----EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPL 258 (800)
Q Consensus 194 iiv-TtR~~~~~~-~~----~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 258 (800)
++| ||....... .+ .....+.++..+.++-.++++.+........ ......+++.+.|.--
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc----ccCHHHHHHhCCCCCH
Confidence 444 554332211 11 1235678888899998999886654433221 2235678888888653
No 216
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.00073 Score=67.43 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCC
Q 041843 67 LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS 146 (800)
Q Consensus 67 r~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 146 (800)
+...+.++.+....=....-+.++|++|+|||.||.+++++. ......+.++++ .++..++......
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l---~~~g~sv~f~~~------~el~~~Lk~~~~~---- 154 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNEL---LKAGISVLFITA------PDLLSKLKAAFDE---- 154 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHH---HHcCCeEEEEEH------HHHHHHHHHHHhc----
Confidence 444444444433221156789999999999999999999998 344456666664 4455555554321
Q ss_pred CCCCCHHHHHHHHHHHhcCCceEEEEcccc
Q 041843 147 WKSKSLEEKAQDIFKTLSKKKFALLLDDLW 176 (800)
Q Consensus 147 ~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~ 176 (800)
... ...+.+.+. +-=||||||+-
T Consensus 155 ---~~~---~~~l~~~l~-~~dlLIiDDlG 177 (254)
T COG1484 155 ---GRL---EEKLLRELK-KVDLLIIDDIG 177 (254)
T ss_pred ---Cch---HHHHHHHhh-cCCEEEEeccc
Confidence 111 112222222 23489999984
No 217
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.26 E-value=9.9e-05 Score=82.88 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=16.2
Q ss_pred CCcceEEEeecCC-Ccccc-cccccCCCCCcEEEccC
Q 041843 440 CPHLLTLFLNDNP-LRTIT-GGFFQSMPCLTVLKMSD 474 (800)
Q Consensus 440 ~~~L~~L~l~~~~-l~~~~-~~~~~~l~~L~~L~Ls~ 474 (800)
++.|+.|.+.++. +.... ..+...+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 4555555555543 22111 12234555566666654
No 218
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.24 E-value=0.0017 Score=75.74 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=42.9
Q ss_pred CcccchhHHHHHHHHHhcc------C--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC
Q 041843 62 PTVVGLQSQLEQVWRCLVQ------E--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 125 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~------~--~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 125 (800)
..++|.++.++.+.+.+.. + ....++.++|+.|+|||++|+.++... . ...+.++++.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~---~~~~~~d~se 519 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---G---VHLERFDMSE 519 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---c---CCeEEEeCch
Confidence 4578999999988887753 1 123468899999999999999998876 2 2345556554
No 219
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.23 E-value=0.0011 Score=68.18 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=41.2
Q ss_pred CcccchhHHHHHHHHHhcc-----CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-----~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+++|.++.++++++++.. +...++++|+|++|+||||||+++++..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999865 2346899999999999999999999887
No 220
>PRK04132 replication factor C small subunit; Provisional
Probab=97.22 E-value=0.0067 Score=70.11 Aligned_cols=151 Identities=14% Similarity=0.056 Sum_probs=93.7
Q ss_pred Ec--CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCc
Q 041843 90 YG--MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKK 167 (800)
Q Consensus 90 ~G--~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 167 (800)
.| |.++||||+|.+++++.- ....-..++-++++...+...+.+.+-....... . -..+.
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~-----~------------~~~~~ 631 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELF-GENWRHNFLELNASDERGINVIREKVKEFARTKP-----I------------GGASF 631 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC-----c------------CCCCC
Confidence 36 789999999999999861 1111235677777776566554443332221110 0 01245
Q ss_pred eEEEEccccch--hh---hhhcCCcCCCCcEEEEEeCCcc-cccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCC
Q 041843 168 FALLLDDLWER--VD---LKKIGVPLPKNSAVVFTTRFVD-VCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHH 240 (800)
Q Consensus 168 ~LlvlDdv~~~--~~---~~~~~~~~~~~s~iivTtR~~~-~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~ 240 (800)
-++|+|+++.. .+ +..+....+...++|+++.+.. +... ......+.+.+++.++..+.+...+.......+
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~- 710 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT- 710 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC-
Confidence 79999999754 23 3333333345667776666433 2222 233568999999999999888877654332222
Q ss_pred ChHHHHHHHHHHhCCChhHHH
Q 041843 241 SIPQLAQTVAKECGGLPLALI 261 (800)
Q Consensus 241 ~~~~~~~~i~~~~~g~Plai~ 261 (800)
++....|++.++|.+..+.
T Consensus 711 --~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 711 --EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred --HHHHHHHHHHcCCCHHHHH
Confidence 6788999999999885443
No 221
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.22 E-value=0.0025 Score=74.90 Aligned_cols=47 Identities=30% Similarity=0.373 Sum_probs=38.3
Q ss_pred CcccchhHHHHHHHHHhcc-----CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-----~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|.++..++|.+++.. ....+++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999998886532 2234689999999999999999999987
No 222
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.096 Score=54.97 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=81.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLS 164 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 164 (800)
|-..++||+|.|||+++.++++.. .|+.. =+..+...+-.+ ++++....
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIy-dLeLt~v~~n~d------------------------Lr~LL~~t- 284 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIY-DLELTEVKLDSD------------------------LRHLLLAT- 284 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceE-EeeeccccCcHH------------------------HHHHHHhC-
Confidence 568899999999999999999987 44432 222222111111 22222222
Q ss_pred CCceEEEEccccchhhh--------------------hhcCC-------cCCCCcEEEEEeCCccccc-----ccCccce
Q 041843 165 KKKFALLLDDLWERVDL--------------------KKIGV-------PLPKNSAVVFTTRFVDVCG-----GMEARRK 212 (800)
Q Consensus 165 ~~~~LlvlDdv~~~~~~--------------------~~~~~-------~~~~~s~iivTtR~~~~~~-----~~~~~~~ 212 (800)
..+-+||+.|++-..++ ..++. ..++-.-||+||...+-++ .-.-+..
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 23456677776532111 01111 1111234666887555432 2123456
Q ss_pred EEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHH
Q 041843 213 FKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAM 267 (800)
Q Consensus 213 ~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 267 (800)
+.+..=+.+.-..|++.+.+... + ..++.+|.+...|.-+.=..++..|
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~---~---h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE---D---HRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC---C---cchhHHHHHHhhcCccCHHHHHHHH
Confidence 88888899999999999987643 1 3455566665555544444444443
No 223
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.21 E-value=0.00069 Score=70.09 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 123 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 123 (800)
...+.++|+.|+|||.||.++++... .....++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEH
Confidence 37799999999999999999999882 33446677665
No 224
>PRK06526 transposase; Provisional
Probab=97.20 E-value=0.00061 Score=67.95 Aligned_cols=25 Identities=24% Similarity=0.281 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+.|+|++|+|||+||.++....
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4679999999999999999998886
No 225
>PRK06921 hypothetical protein; Provisional
Probab=97.20 E-value=0.0013 Score=66.36 Aligned_cols=38 Identities=32% Similarity=0.346 Sum_probs=30.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCC-CCEEEEEEE
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD-FDYVIWVVV 123 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~ 123 (800)
....+.++|+.|+|||+||.++++.. ... ...+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l---~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL---MRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH---hhhcCceEEEEEH
Confidence 35789999999999999999999987 222 455677664
No 226
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.20 E-value=0.0028 Score=66.84 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=81.3
Q ss_pred cccchhHHHHHHHHHhccCCCceE-EEEEcCCCCcHHHHHHHHHhhcccCCC------------------CCCEEEEEEE
Q 041843 63 TVVGLQSQLEQVWRCLVQEPAAGI-IGLYGMGGVGKTTLLTQINNKFVDNPT------------------DFDYVIWVVV 123 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~~~~~~v-v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~ 123 (800)
.++|-+....++..+....++.+. +.++|+.|+||||+|.++++....... ....+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 467888888899888875434454 999999999999999999998721110 1234444444
Q ss_pred cCccC---HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh-----hhhhcCCcCCCCcEEE
Q 041843 124 SKDLQ---LEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV-----DLKKIGVPLPKNSAVV 195 (800)
Q Consensus 124 ~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----~~~~~~~~~~~~s~ii 195 (800)
+.... ..+..+++.+...... ..+..-++|+|+++... .+......-+....+|
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 44333 2333333333332111 03567899999997542 2333333344577777
Q ss_pred EEeCCc-cccccc-CccceEEeccCCh
Q 041843 196 FTTRFV-DVCGGM-EARRKFKVACLSD 220 (800)
Q Consensus 196 vTtR~~-~~~~~~-~~~~~~~l~~L~~ 220 (800)
++|... .+.... .....+.+.+.+.
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEcCChhhccchhhhcceeeecCCchH
Confidence 777632 232211 2334566666333
No 227
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.18 E-value=0.00095 Score=64.93 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=31.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 123 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 123 (800)
.-.++|.|+.|+||||++..+.... ...|..+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 3578999999999999999999887 678888877754
No 228
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.18 E-value=0.0018 Score=66.44 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=65.1
Q ss_pred chhHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCC
Q 041843 66 GLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGL 142 (800)
Q Consensus 66 gr~~~~~~l~~~l~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 142 (800)
+|....+...+++.. +...+-+.|+|+.|+|||.||.++++... .....+.++.++ .+..++......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~---~~g~~v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA---KKGVSSTLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEEEHH------HHHHHHHHHHhc
Confidence 455555555555543 12356899999999999999999999983 333445666553 455555544321
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hhhh--hcCCc-----CCCCcEEEEEeC
Q 041843 143 YTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VDLK--KIGVP-----LPKNSAVVFTTR 199 (800)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~--~~~~~-----~~~~s~iivTtR 199 (800)
.+..+ ..+.+. +-=||||||+... .+|. .+... ...+..+|+||.
T Consensus 206 -------~~~~~----~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 -------GSVKE----KIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -------CcHHH----HHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 12222 223333 4568999998422 2232 22221 123567888886
No 229
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.17 E-value=4.6e-05 Score=65.08 Aligned_cols=88 Identities=25% Similarity=0.342 Sum_probs=78.7
Q ss_pred ccceEEEccccccCCCCC--CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEec
Q 041843 419 EMGRRLSLMKNSIGNLPT--VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDI 496 (800)
Q Consensus 419 ~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L 496 (800)
..+..+++++|.+..+|. ...++-+.+|++.+|.+..+|.. +..++.|+.|+++.| .+...|.-|..|.+|-+||.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence 466788999999998884 35667899999999999999998 899999999999999 88899999999999999999
Q ss_pred cCCCCcccchhh
Q 041843 497 SYTSVTGLPEGL 508 (800)
Q Consensus 497 ~~~~i~~lp~~i 508 (800)
.+|.+..+|..+
T Consensus 131 ~~na~~eid~dl 142 (177)
T KOG4579|consen 131 PENARAEIDVDL 142 (177)
T ss_pred CCCccccCcHHH
Confidence 999998888764
No 230
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.024 Score=58.96 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=52.9
Q ss_pred CCceEEEEccccch--hhhhhc---CCcCCCCcEEEEEe-CCcccccc-cCccceEEeccCChHHHHHHHHHHhCccccc
Q 041843 165 KKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTT-RFVDVCGG-MEARRKFKVACLSDEDAWELFREKVGEETIE 237 (800)
Q Consensus 165 ~~~~LlvlDdv~~~--~~~~~~---~~~~~~~s~iivTt-R~~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 237 (800)
++.-++|+|+++.. .....+ ...-++++.+|++| +...+... ......+.+.+++.++..+.+... +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~---- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV---- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC----
Confidence 45568889998754 222222 22234455555544 43444432 234568999999999999999765 11
Q ss_pred CCCChHHHHHHHHHHhCCChhHHHHH
Q 041843 238 SHHSIPQLAQTVAKECGGLPLALIII 263 (800)
Q Consensus 238 ~~~~~~~~~~~i~~~~~g~Plai~~~ 263 (800)
+ . ...++..++|.|.....+
T Consensus 206 -~---~--~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -A---D--ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -C---h--HHHHHHHcCCCHHHHHHH
Confidence 1 1 223577889999755443
No 231
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.15 E-value=0.00045 Score=63.47 Aligned_cols=124 Identities=23% Similarity=0.267 Sum_probs=74.3
Q ss_pred ceEEEeecCCCccccccccc-CCCCCcEEEccCccccccccccccccccccEEeccCCCCcccchhhhc-CccCceeccc
Q 041843 443 LLTLFLNDNPLRTITGGFFQ-SMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEGLKA-LVNLKCLNLD 520 (800)
Q Consensus 443 L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~-l~~L~~L~l~ 520 (800)
=+.+++.+.++..+.. ++ -..+.-.+||++| .+..++ .+..++.|.+|.+.+|+|+.+-..+.. +++|+.|.+.
T Consensus 21 e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--LGATLDQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccchhh--ccccccccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 3555666555433322 11 1335667888888 555554 466778888888888888887655543 4568888887
Q ss_pred cccc--ccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEE
Q 041843 521 WADE--LVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEIT 578 (800)
Q Consensus 521 ~~~~--l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 578 (800)
+|+. ++++-+ +..+++|++|.+.+|.+....+ .-.-.+..+++|+.|+..
T Consensus 97 nNsi~~l~dl~p--La~~p~L~~Ltll~Npv~~k~~------YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 97 NNSIQELGDLDP--LASCPKLEYLTLLGNPVEHKKN------YRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred Ccchhhhhhcch--hccCCccceeeecCCchhcccC------ceeEEEEecCcceEeehh
Confidence 6542 223333 5667777888777776654332 122234556667776655
No 232
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.15 E-value=0.00034 Score=65.81 Aligned_cols=72 Identities=29% Similarity=0.397 Sum_probs=43.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
..-+.|+|+.|+|||.||.++++... .....+.|+++ .+++..+...- ......+ +.+.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~---~~g~~v~f~~~------~~L~~~l~~~~-------~~~~~~~----~~~~l 106 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI---RKGYSVLFITA------SDLLDELKQSR-------SDGSYEE----LLKRL 106 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEEH------HHHHHHHHCCH-------CCTTHCH----HHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc---cCCcceeEeec------Cceeccccccc-------cccchhh----hcCcc
Confidence 46799999999999999999998873 23345666653 44555543221 1122222 23334
Q ss_pred cCCceEEEEcccc
Q 041843 164 SKKKFALLLDDLW 176 (800)
Q Consensus 164 ~~~~~LlvlDdv~ 176 (800)
.+ -=||||||+.
T Consensus 107 ~~-~dlLilDDlG 118 (178)
T PF01695_consen 107 KR-VDLLILDDLG 118 (178)
T ss_dssp HT-SSCEEEETCT
T ss_pred cc-ccEecccccc
Confidence 33 3577899984
No 233
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0034 Score=68.61 Aligned_cols=152 Identities=16% Similarity=0.210 Sum_probs=89.8
Q ss_pred CcccchhHHHHHHHHHhcc-----CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 136 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 136 (800)
.+=+|.++..++|.+++.- ..+.++++++||+|+|||++|+.++... ...| +.+++..-.+..++--.=
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhhcccc
Confidence 3458999999999998742 3356899999999999999999999987 3333 223455544444432221
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHh---cCCceEEEEccccch---------hhhhhcCCc-----CC--------CC
Q 041843 137 GKKIGLYTDSWKSKSLEEKAQDIFKTL---SKKKFALLLDDLWER---------VDLKKIGVP-----LP--------KN 191 (800)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~---------~~~~~~~~~-----~~--------~~ 191 (800)
...++ ...-++.+.| +-..-|+.+|.|+.. ..+-++..| |. +=
T Consensus 485 RTYVG------------AMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 485 RTYVG------------AMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred eeeec------------cCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccch
Confidence 11111 1112233333 334568889998632 122222222 11 13
Q ss_pred cEEEEEeCCccc----ccccCccceEEeccCChHHHHHHHHHHh
Q 041843 192 SAVVFTTRFVDV----CGGMEARRKFKVACLSDEDAWELFREKV 231 (800)
Q Consensus 192 s~iivTtR~~~~----~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 231 (800)
|+|++...-..+ .........|++.++..+|-.++-.++.
T Consensus 553 SkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 565553321111 1112345689999999999888877765
No 234
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.12 E-value=0.0026 Score=59.33 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccC
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 128 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 128 (800)
++.|+|++|+||||+|..++... ......++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 47899999999999999998887 33456778888765543
No 235
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.09 E-value=0.0023 Score=63.27 Aligned_cols=46 Identities=26% Similarity=0.374 Sum_probs=36.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 132 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 132 (800)
...++.|+|++|+|||++|.+++.... .....++|++.. .+....+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 457999999999999999999988772 345778999987 5554444
No 236
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.09 E-value=0.018 Score=60.73 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccC----HHHHHHHHHHHh
Q 041843 67 LQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ----LEKIQETIGKKI 140 (800)
Q Consensus 67 r~~~~~~l~~~l~~~--~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~----~~~~~~~i~~~l 140 (800)
|+...+.+.+.+.+. ....+|+|.|.=|+||||+.+.+.+........-..+++.+.....+ ...++..|..++
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 345567777777763 57889999999999999999999998832211223444444433222 344444444444
No 237
>PRK09183 transposase/IS protein; Provisional
Probab=97.08 E-value=0.0015 Score=65.55 Aligned_cols=25 Identities=36% Similarity=0.402 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+.|+|+.|+|||+||.+++...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999998775
No 238
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.06 E-value=0.0034 Score=73.04 Aligned_cols=156 Identities=17% Similarity=0.212 Sum_probs=85.9
Q ss_pred CCcccchhHHHHHHHHHhcc-----CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET 135 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~-----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 135 (800)
+.+.+|.++..++|.+++.. .....++.++|++|+||||+|+.++... ...|- .+..+...+..++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~---~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYV---RMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEEcCCCCCHHHhccc
Confidence 34689999999999988753 2245689999999999999999999876 33332 2333333333222211
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch---------hhhhhcCCc--------------CC-CC
Q 041843 136 IGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER---------VDLKKIGVP--------------LP-KN 191 (800)
Q Consensus 136 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---------~~~~~~~~~--------------~~-~~ 191 (800)
-....+ .......+.+... ....-+++||+++.. ..+-++..+ +. .+
T Consensus 395 ~~~~~g--------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIG--------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCC--------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 111111 1111222223222 223447889998532 111111111 11 13
Q ss_pred cEEEEEeCCccccc-ccCccceEEeccCChHHHHHHHHHHh
Q 041843 192 SAVVFTTRFVDVCG-GMEARRKFKVACLSDEDAWELFREKV 231 (800)
Q Consensus 192 s~iivTtR~~~~~~-~~~~~~~~~l~~L~~~e~~~l~~~~~ 231 (800)
..+|.|+....+.. ..+...++.+.+++.+|-.++.+++.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 33444554332211 11334578999999999998887775
No 239
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0084 Score=67.34 Aligned_cols=171 Identities=17% Similarity=0.192 Sum_probs=102.0
Q ss_pred CcccchhHHHHHHHH---HhccC--------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 62 PTVVGLQSQLEQVWR---CLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~---~l~~~--------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
.++.|.++..++|.+ +|... .-++=|.++||+|.|||-||++++-.. . +-|+.++...-++
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGSEFvE 382 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGSEFVE 382 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechHHHHH
Confidence 457788776655555 45442 235779999999999999999999886 2 3445554431111
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEccccchh-----------------hhhhcCCc---CC
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-SKKKFALLLDDLWERV-----------------DLKKIGVP---LP 189 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~-----------------~~~~~~~~---~~ 189 (800)
... ... ..+.+.+...- ...++.+.+|+++... .+.++... +.
T Consensus 383 --------~~~-------g~~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 383 --------MFV-------GVG-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred --------Hhc-------ccc-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 111 011 22333333333 3467899999876331 12222111 11
Q ss_pred C--CcEEEEEeCCcccccc-----cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhH
Q 041843 190 K--NSAVVFTTRFVDVCGG-----MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLA 259 (800)
Q Consensus 190 ~--~s~iivTtR~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (800)
. +..++-+|+...+.+. -..++.+.++.-+..+-.++|.-++...... .+..++.+ |+...-|.+=|
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHH
Confidence 1 3334446655555332 2345678899999999999999998765532 33355566 99999888744
No 240
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.03 E-value=0.026 Score=58.32 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=34.9
Q ss_pred eEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHH
Q 041843 212 KFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLAL 260 (800)
Q Consensus 212 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 260 (800)
++++++++.+|+..++.-+....-.......+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887755443222333556666666679998643
No 241
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.02 E-value=0.0059 Score=60.49 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=55.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC------CEEEEEEEcCccCHHHHHHHHHHHhCCCC----CC---CCC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF------DYVIWVVVSKDLQLEKIQETIGKKIGLYT----DS---WKS 149 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~---~~~ 149 (800)
...++.|+|++|+|||++|.+++... .... ..++|++....++...+.+.. ....... +. ...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~-~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLVQLA-VRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHHHHH-HHhccchhhhhccEEEEeC
Confidence 45799999999999999999998775 2223 678999988777765544322 2221110 00 012
Q ss_pred CCHHHHHHHHHHHhc----CCceEEEEcccc
Q 041843 150 KSLEEKAQDIFKTLS----KKKFALLLDDLW 176 (800)
Q Consensus 150 ~~~~~~~~~l~~~l~----~~~~LlvlDdv~ 176 (800)
.+.++....+.+... .+.-++|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 344444444444332 345688999974
No 242
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.01 E-value=0.0082 Score=61.25 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=43.3
Q ss_pred CCcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 131 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 131 (800)
++.++=..+....+...+..+ +.|.|.|++|+||||+|++++... ... .+.|.+.......+
T Consensus 44 d~~y~f~~~~~~~vl~~l~~~---~~ilL~G~pGtGKTtla~~lA~~l---~~~---~~rV~~~~~l~~~D 105 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAYD---RRVMVQGYHGTGKSTHIEQIAARL---NWP---CVRVNLDSHVSRID 105 (327)
T ss_pred CCCccCCHHHHHHHHHHHhcC---CcEEEEeCCCChHHHHHHHHHHHH---CCC---eEEEEecCCCChhh
Confidence 445555656667777777654 579999999999999999999987 222 23555555544433
No 243
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.01 E-value=0.038 Score=53.71 Aligned_cols=209 Identities=12% Similarity=0.156 Sum_probs=119.9
Q ss_pred cccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhccc---CCCCCCEEEEEEEcCc-------------
Q 041843 63 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVD---NPTDFDYVIWVVVSKD------------- 126 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~------------- 126 (800)
.+.++++.-.++.....++ +.+...++||.|.||-|.+..+.+..-. .+-+-+..-|.+.+..
T Consensus 14 ~l~~~~e~~~~Lksl~~~~-d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTG-DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hcccHHHHHHHHHHhcccC-CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 4677777777777766644 7899999999999999999888777511 0112233444432221
Q ss_pred --------cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCce-EEEEccccch--h---hhhhcCCcCCCCc
Q 041843 127 --------LQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKF-ALLLDDLWER--V---DLKKIGVPLPKNS 192 (800)
Q Consensus 127 --------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~~--~---~~~~~~~~~~~~s 192 (800)
..-+-+.++++++++... ..+ .-..+.| ++|+-.+++. + .++.-.......+
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~------qie--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQ------QIE--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhc------chh--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 011223444444432110 000 0112343 4555555432 1 2332223334467
Q ss_pred EEEEEeCCc-cccccc-CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHHhcC
Q 041843 193 AVVFTTRFV-DVCGGM-EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAMAYK 270 (800)
Q Consensus 193 ~iivTtR~~-~~~~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~ 270 (800)
|+|+...+- .+.... ...-.++++..+++|....+.+....+....+ ++.+.+|+++++|+-.-...+-...+-+
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 777644321 121111 22346899999999999999998877775555 8899999999999764333333332211
Q ss_pred ----------CCHHHHHHHHHHHHhhhhc
Q 041843 271 ----------KTPEEWRYAIEVLRRSASE 289 (800)
Q Consensus 271 ----------~~~~~w~~~l~~l~~~~~~ 289 (800)
...-+|+..+++.....-.
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~i~~ 264 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARVILK 264 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHHHHh
Confidence 1345899888877665443
No 244
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.00 E-value=0.0021 Score=62.77 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=38.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQE 134 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 134 (800)
...++.|+|++|+|||++|.+++... ......++|++... +....+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 45899999999999999999998876 23457899999876 55555544
No 245
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.00 E-value=0.0038 Score=73.82 Aligned_cols=61 Identities=25% Similarity=0.325 Sum_probs=43.7
Q ss_pred CcccchhHHHHHHHHHhcc------C--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC
Q 041843 62 PTVVGLQSQLEQVWRCLVQ------E--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 125 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~------~--~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 125 (800)
..++|.+..++.+...+.. + ....++.++|+.|+|||++|+.+++.. .......+.++++.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l---~~~~~~~i~id~se 636 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM---FDSDDAMVRIDMSE 636 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh---hcCCCcEEEEEhHH
Confidence 3578999999888888753 1 112478999999999999999999876 22223345555543
No 246
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.00 E-value=0.004 Score=58.99 Aligned_cols=47 Identities=28% Similarity=0.486 Sum_probs=37.9
Q ss_pred CcccchhHHHHHHHHH---hccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRC---LVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~---l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++|.|...+.+++- +..+...--|.+||-.|+|||+|++++.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 4589999888888754 2334345679999999999999999999998
No 247
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0065 Score=57.64 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=83.4
Q ss_pred ccchhHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHH
Q 041843 64 VVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 131 (800)
Q Consensus 64 ~vgr~~~~~~l~~~l~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 131 (800)
+=|.+-+.+++.+...- -+.++-|.++|++|.|||-||++++++. ...|-. +.. .+
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t---~a~fir-----vvg----se 224 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIR-----VVG----SE 224 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---chheee-----ecc----HH
Confidence 45677777777766421 0357889999999999999999999987 444432 211 11
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCceEEEEccccch------------hhhhhcC----Cc---C--C
Q 041843 132 IQETIGKKIGLYTDSWKSKSLEEKAQDIFKT-LSKKKFALLLDDLWER------------VDLKKIG----VP---L--P 189 (800)
Q Consensus 132 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~------------~~~~~~~----~~---~--~ 189 (800)
+.+.. ++ .+ . ...+.+.+. =.+.+.++++|.++.. .....+. .. | .
T Consensus 225 fvqky---lg-eg-------p-rmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~ 292 (408)
T KOG0727|consen 225 FVQKY---LG-EG-------P-RMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT 292 (408)
T ss_pred HHHHH---hc-cC-------c-HHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc
Confidence 11111 11 11 1 122222222 2456788999998532 1111111 11 1 1
Q ss_pred CCcEEEEEeCCccc-----ccccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHH
Q 041843 190 KNSAVVFTTRFVDV-----CGGMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQ 244 (800)
Q Consensus 190 ~~s~iivTtR~~~~-----~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~ 244 (800)
.+.+||..|..... ...-.-++.++.+--+..+-.-.|...........+-++++
T Consensus 293 ~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~ 352 (408)
T KOG0727|consen 293 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLED 352 (408)
T ss_pred cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHH
Confidence 26788887763332 22212345666665555566666666554444334434443
No 248
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.99 E-value=0.0089 Score=66.78 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=38.4
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+++|.+..++.+...+... ....|.|+|+.|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~-~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP-NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999998877654 45677899999999999999998753
No 249
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.98 E-value=0.0077 Score=69.01 Aligned_cols=167 Identities=16% Similarity=0.139 Sum_probs=91.0
Q ss_pred cccchhHHHHHHHHHh---ccC--------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHH
Q 041843 63 TVVGLQSQLEQVWRCL---VQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 131 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l---~~~--------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 131 (800)
++.|.+...+++.+.+ ... .-.+-|.|+|++|+|||++|+.++... ...| +.++.+ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~------~ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGS------D 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehH------H
Confidence 4567666665555443 211 113459999999999999999998886 2222 222221 1
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh----------------hhhhcCCc---C--CC
Q 041843 132 IQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV----------------DLKKIGVP---L--PK 190 (800)
Q Consensus 132 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~---~--~~ 190 (800)
+... . ...........+...-...+.+|++|+++... .+..+... + ..
T Consensus 221 ~~~~----~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 221 FVEM----F-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred hHHh----h-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 1110 0 01111222223333334578999999986431 11122111 1 12
Q ss_pred CcEEEEEeCCccccccc-----CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCC
Q 041843 191 NSAVVFTTRFVDVCGGM-----EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGL 256 (800)
Q Consensus 191 ~s~iivTtR~~~~~~~~-----~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 256 (800)
+..||.||..++..... ..++.+.++..+.++-.++++.+........+.+ ...+++.+.|.
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 45566677765543311 2356788998999899999988876544322222 33466666553
No 250
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.96 E-value=0.0012 Score=63.57 Aligned_cols=109 Identities=11% Similarity=0.117 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH-HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE-KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
..+.|+|+.|+||||++..+.... .......++.- ..+.... .-...+..+-. ...+.....+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPIEFVHESKRSLINQRE------VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCccccccCccceeeecc------cCCCccCHHHHHHHHh
Confidence 478999999999999999988776 22223333322 1111100 00000111100 0111223445566777
Q ss_pred cCCceEEEEccccchhhhhhcCCcCCCCcEEEEEeCCccc
Q 041843 164 SKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDV 203 (800)
Q Consensus 164 ~~~~~LlvlDdv~~~~~~~~~~~~~~~~s~iivTtR~~~~ 203 (800)
...+=.+++|++.+.+.+.........|..++.|+-...+
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAAETGHLVMSTLHTNSA 111 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcH
Confidence 7778899999998776655543333346666666654433
No 251
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.95 E-value=0.0026 Score=63.98 Aligned_cols=131 Identities=16% Similarity=0.232 Sum_probs=72.6
Q ss_pred chhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEE----EcCcc---------CHHHH
Q 041843 66 GLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVV----VSKDL---------QLEKI 132 (800)
Q Consensus 66 gr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~----~~~~~---------~~~~~ 132 (800)
+|..+..--.++|.++ +...|.+.|.+|.|||.||-+..=.....++.|..++-.. +.++. -+.--
T Consensus 228 prn~eQ~~ALdlLld~-dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PW 306 (436)
T COG1875 228 PRNAEQRVALDLLLDD-DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPW 306 (436)
T ss_pred cccHHHHHHHHHhcCC-CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccch
Confidence 3555554455666766 8999999999999999888766544323344554333211 22111 01111
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHH----------HHhcCC---ceEEEEccccc--hhhhhhcCCcCCCCcEEEEE
Q 041843 133 QETIGKKIGLYTDSWKSKSLEEKAQDIF----------KTLSKK---KFALLLDDLWE--RVDLKKIGVPLPKNSAVVFT 197 (800)
Q Consensus 133 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~----------~~l~~~---~~LlvlDdv~~--~~~~~~~~~~~~~~s~iivT 197 (800)
.+.|...+...... .... ...++.+. .+++|+ +.++|+|.+.+ ..++..+....+.|++|+.|
T Consensus 307 mq~i~DnLE~L~~~-~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~G~GsKIVl~ 384 (436)
T COG1875 307 MQAIFDNLEVLFSP-NEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRAGEGSKIVLT 384 (436)
T ss_pred HHHHHhHHHHHhcc-cccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhccCCCEEEEc
Confidence 23333322211110 1111 22222221 123454 47999999975 46677777778889999998
Q ss_pred eC
Q 041843 198 TR 199 (800)
Q Consensus 198 tR 199 (800)
--
T Consensus 385 gd 386 (436)
T COG1875 385 GD 386 (436)
T ss_pred CC
Confidence 75
No 252
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.94 E-value=0.00068 Score=59.60 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 253
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0017 Score=73.26 Aligned_cols=105 Identities=22% Similarity=0.355 Sum_probs=69.0
Q ss_pred CcccchhHHHHHHHHHhcc--------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ--------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQ 133 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~--------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 133 (800)
..++|.++.++.+.+.+.. +....+....||.|||||-||++++... .+.=+..+.+++|.......+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHHHH
Confidence 4589999999999988753 1234678889999999999999999988 5544667777776544333333
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCce-EEEEccccc
Q 041843 134 ETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKF-ALLLDDLWE 177 (800)
Q Consensus 134 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~ 177 (800)
+-| +.+. ... ..++ --.+-+.++.++| +|.||++..
T Consensus 568 rLI----GaPP-GYV--Gyee-GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 568 RLI----GAPP-GYV--GYEE-GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred HHh----CCCC-CCc--eecc-ccchhHhhhcCCCeEEEechhhh
Confidence 322 2211 111 1111 2235556677887 777899963
No 254
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.91 E-value=0.0002 Score=80.45 Aligned_cols=113 Identities=19% Similarity=0.079 Sum_probs=55.5
Q ss_pred CCCCCcEEEccCcccccc--ccccccccccccEEeccCC--CCccc----chhhhcCccCceecccccccccccchhhhC
Q 041843 463 SMPCLTVLKMSDNIMLRQ--LPTGISKLVSLQLLDISYT--SVTGL----PEGLKALVNLKCLNLDWADELVEVPQQLLS 534 (800)
Q Consensus 463 ~l~~L~~L~Ls~~~~~~~--lp~~i~~L~~L~~L~L~~~--~i~~l----p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~ 534 (800)
.++.|+.|.+.++..+.. +-.....+++|+.|+++++ .+... +.....+.+|+.|++++|..+.+..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666666644443 2234455666666666652 11111 122334466666666666533332221122
Q ss_pred -CCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccc
Q 041843 535 -NFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSF 582 (800)
Q Consensus 535 -~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 582 (800)
.+++|++|.+..|....+. ........+++|+.|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~-------gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDE-------GLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchh-------HHHHHHHhcCcccEEeeecCcc
Confidence 2566666665555422211 3344444566666666665544
No 255
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.90 E-value=0.0025 Score=75.44 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=44.5
Q ss_pred CcccchhHHHHHHHHHhcc------C--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC
Q 041843 62 PTVVGLQSQLEQVWRCLVQ------E--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 125 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~------~--~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 125 (800)
..++|.++.++.+...+.. + ....++.++||.|+|||+||+.+++.. .+.-...+.++++.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l---~~~~~~~~~~d~s~ 577 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF---FGSEDAMIRLDMSE 577 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCccceEEEEchh
Confidence 4688999999999888752 1 123467799999999999999999886 33334455555554
No 256
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.90 E-value=0.0067 Score=59.65 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=33.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 128 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 128 (800)
...++.|+|++|+||||+|.+++... ......++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 45899999999999999999998886 23455778887655443
No 257
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.012 Score=64.41 Aligned_cols=150 Identities=19% Similarity=0.135 Sum_probs=85.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCcc--CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL--QLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIF 160 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 160 (800)
..+.|.|.|+.|+|||+||+++++... ++....+.+++++.-. .++.+++.+-. .+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-------------------vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-------------------VFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHH-------------------HHH
Confidence 456899999999999999999999983 5666677778876532 23333333222 233
Q ss_pred HHhcCCceEEEEccccch--------hh-----------hhhc-CCcCCCCcE--EEEEeCCccccc-----ccCccceE
Q 041843 161 KTLSKKKFALLLDDLWER--------VD-----------LKKI-GVPLPKNSA--VVFTTRFVDVCG-----GMEARRKF 213 (800)
Q Consensus 161 ~~l~~~~~LlvlDdv~~~--------~~-----------~~~~-~~~~~~~s~--iivTtR~~~~~~-----~~~~~~~~ 213 (800)
+.+.-.+-+|||||++-. .+ +.++ ......+.+ +|.|.....-.. ..-.....
T Consensus 489 e~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~ 568 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVI 568 (952)
T ss_pred HHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEE
Confidence 345567899999998521 01 1111 111122444 344444322211 11123467
Q ss_pred EeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCC
Q 041843 214 KVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGL 256 (800)
Q Consensus 214 ~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 256 (800)
.++.+..++-.++++...-.... ....+...-+..+|+|.
T Consensus 569 ~L~ap~~~~R~~IL~~~~s~~~~---~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 569 ALPAPAVTRRKEILTTIFSKNLS---DITMDDLDFLSVKTEGY 608 (952)
T ss_pred ecCCcchhHHHHHHHHHHHhhhh---hhhhHHHHHHHHhcCCc
Confidence 88888888877777655432221 11133344477888774
No 258
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.86 E-value=0.015 Score=64.17 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=43.1
Q ss_pred cccchhHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE
Q 041843 63 TVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 123 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 123 (800)
+++--.+-++++..||.. ....+++.++||+|+||||.++.+++.. .|+.+-|.+.
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~np 79 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWINP 79 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecCC
Confidence 455555677888888764 2346799999999999999999999886 5677778653
No 259
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.84 E-value=0.0042 Score=59.35 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc-cCHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTDS-WKSKSLEEKAQDIFK 161 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 161 (800)
++++.++|+.|+||||.+.+++.... ..-..+..++.... ....+-++..++.++.+... ....+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~---~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK---LKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh---hccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 47999999999999999998888872 22556777776432 24455567778877764211 123344444444344
Q ss_pred HhcCC-ceEEEEccc
Q 041843 162 TLSKK-KFALLLDDL 175 (800)
Q Consensus 162 ~l~~~-~~LlvlDdv 175 (800)
..+.+ -=++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 34333 347777776
No 260
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00078 Score=64.76 Aligned_cols=83 Identities=28% Similarity=0.329 Sum_probs=42.4
Q ss_pred ccccceEEEccccccCCCCCCCCCCcceEEEeecCCC--c-ccccccccCCCCCcEEEccCcccccccccc---cccccc
Q 041843 417 GWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPL--R-TITGGFFQSMPCLTVLKMSDNIMLRQLPTG---ISKLVS 490 (800)
Q Consensus 417 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l--~-~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~---i~~L~~ 490 (800)
.+..+..+++.+..+.++..+..+++|+.|.++.|.. . +++.. ...+++|++|++++| .+.. +++ ...+.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKD-LSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-cccc-ccccchhhhhcc
Confidence 3445566666666666666666667777777776632 1 11111 234466666666666 3322 111 233444
Q ss_pred ccEEeccCCCCc
Q 041843 491 LQLLDISYTSVT 502 (800)
Q Consensus 491 L~~L~L~~~~i~ 502 (800)
|..||+.+|..+
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 455555554433
No 261
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=9.7e-05 Score=70.88 Aligned_cols=100 Identities=27% Similarity=0.258 Sum_probs=65.0
Q ss_pred CCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccCCCCcccch--hhhcCccCcee
Q 041843 440 CPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPE--GLKALVNLKCL 517 (800)
Q Consensus 440 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L 517 (800)
+.+.+.|++.+|.+..+.- ..+|+.|++|.||-| .++.+. .+..+.+|+.|.|+.|.|..+-+ .+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4456667777777766643 567788888888877 555553 36677778888888877776543 35677777777
Q ss_pred cccccccccccchh----hhCCCCCCcEEE
Q 041843 518 NLDWADELVEVPQQ----LLSNFSRLRVLR 543 (800)
Q Consensus 518 ~l~~~~~l~~lp~~----~~~~L~~L~~L~ 543 (800)
-|..|...+.-+.. ++.-|++|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77666544444322 345566666665
No 262
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.79 E-value=0.0027 Score=75.38 Aligned_cols=62 Identities=26% Similarity=0.322 Sum_probs=45.9
Q ss_pred CcccchhHHHHHHHHHhcc------C--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc
Q 041843 62 PTVVGLQSQLEQVWRCLVQ------E--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 126 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~------~--~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 126 (800)
..++|.+..++.+...+.. + ....++.++|+.|+|||++|+.++... .......+.++++..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~~ 634 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSEY 634 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechhh
Confidence 4589999999999988754 1 123578899999999999999999886 333344555665543
No 263
>PRK06696 uridine kinase; Validated
Probab=96.79 E-value=0.0031 Score=62.12 Aligned_cols=43 Identities=12% Similarity=0.235 Sum_probs=36.3
Q ss_pred chhHHHHHHHHHhcc--CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 66 GLQSQLEQVWRCLVQ--EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 66 gr~~~~~~l~~~l~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.|.+.+++|.+.+.. .+...+|+|.|.+|+||||+|+.+++..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467778888887754 3467899999999999999999999887
No 264
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.039 Score=57.29 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
-...+.++|+.|+||||+|+.++...
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999998886
No 265
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.78 E-value=0.0073 Score=60.26 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=37.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC---CCCCEEEEEEEcCccCHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDLQLEKIQE 134 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~ 134 (800)
...++.|+|++|+|||++|.+++....... +....++|++....++...+.+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 457999999999999999999976541111 1136899999888776655433
No 266
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0069 Score=69.96 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=38.5
Q ss_pred CcccchhHHHHHHHHHhcc--------CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQ--------EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~--------~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++|.++.++.|.+.+.. +.....+.++|+.|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999888762 1224578999999999999999998886
No 267
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.049 Score=51.86 Aligned_cols=161 Identities=18% Similarity=0.300 Sum_probs=89.3
Q ss_pred ccc-hhHHHHHHHHHhcc---C---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 64 VVG-LQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 64 ~vg-r~~~~~~l~~~l~~---~---------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
++| -+.++++|.+.+.- . ..++-+.++|++|.|||-||++++++. ...|+.+|.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH---H
Confidence 555 46777777766531 0 356789999999999999999999886 1345666643 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEccccch------------hh--------hhhcCC-cC
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-SKKKFALLLDDLWER------------VD--------LKKIGV-PL 188 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~------------~~--------~~~~~~-~~ 188 (800)
-+++-|.+. ....+.+.-.- ..-+-+|+.|.+++. .. +.++-. .-
T Consensus 217 lvqk~igeg-------------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 217 LVQKYIGEG-------------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHHhhhh-------------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 122222111 11111111111 235677888887532 00 111100 01
Q ss_pred CCCcEEEEEeCCccccc-----ccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHH
Q 041843 189 PKNSAVVFTTRFVDVCG-----GMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQT 248 (800)
Q Consensus 189 ~~~s~iivTtR~~~~~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 248 (800)
..+-+||.+|..-++.+ .-..++.++.++-+++.-.++++-+.........-++..++++
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaek 348 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEK 348 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHh
Confidence 12677888776444432 2234567889998888888888777655443322233443333
No 268
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.71 E-value=0.011 Score=55.07 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++.|.|.+|+||||+|..++...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc
Confidence 368999999999999999998775
No 269
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.71 E-value=0.005 Score=63.07 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=57.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 041843 82 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS---WKSKSLEEKAQD 158 (800)
Q Consensus 82 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 158 (800)
+..+++-|+|++|+||||||.+++... ......++|++....++.. .+++++...+. ..+...++....
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEI 124 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 345799999999999999999988776 2345677899887765543 34444432111 123345555555
Q ss_pred HHHHhc-CCceEEEEcccc
Q 041843 159 IFKTLS-KKKFALLLDDLW 176 (800)
Q Consensus 159 l~~~l~-~~~~LlvlDdv~ 176 (800)
+...++ +..-+||+|-|.
T Consensus 125 ~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHhhccCCcEEEEcchh
Confidence 555443 456799999974
No 270
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.66 E-value=0.0052 Score=62.99 Aligned_cols=86 Identities=20% Similarity=0.163 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS---WKSKSLEEKAQDI 159 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 159 (800)
.-+++-|+|++|+||||||.+++... ......++|++....++.. .+.+++...+. ..+.+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45799999999999999999988776 3345678899987766653 23334332111 1233455555555
Q ss_pred HHHhc-CCceEEEEcccc
Q 041843 160 FKTLS-KKKFALLLDDLW 176 (800)
Q Consensus 160 ~~~l~-~~~~LlvlDdv~ 176 (800)
...++ +..-+||+|-|.
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55443 456799999974
No 271
>PRK06762 hypothetical protein; Provisional
Probab=96.66 E-value=0.022 Score=53.18 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.+|+|+|+.|+||||+|+.+++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 272
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.63 E-value=0.0052 Score=72.42 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=43.8
Q ss_pred CcccchhHHHHHHHHHhcc--------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEc
Q 041843 62 PTVVGLQSQLEQVWRCLVQ--------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS 124 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~--------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 124 (800)
..++|.++.++.+.+.+.. +....++.++|+.|+|||.+|++++... .+.....+-++++
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l---~~~~~~~~~~dms 633 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL---YGGEQNLITINMS 633 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH---hCCCcceEEEeHH
Confidence 4588999999999888742 1233578999999999999999998887 3333444444443
No 273
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.63 E-value=0.013 Score=58.37 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=35.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET 135 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 135 (800)
...++.|.|++|+|||++|.++.... -.....++|++... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHH
Confidence 45899999999999999999987765 23456788888765 34444443
No 274
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.14 Score=57.10 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=57.9
Q ss_pred cccchhHHHHHHHHHhcc----------C-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHH
Q 041843 63 TVVGLQSQLEQVWRCLVQ----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 131 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~----------~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 131 (800)
++=|-++...+|.+-+.- + ....-|.++|++|.|||-+|++|+-++ . .-|+.|..+ +
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGP----E 740 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGP----E 740 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCH----H
Confidence 455778888888776643 1 124578999999999999999999887 2 234444433 1
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccc
Q 041843 132 IQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWE 177 (800)
Q Consensus 132 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 177 (800)
+++.. ...+.+...+.+.+.=..+++.|+||.+++
T Consensus 741 LLNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 LLNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHH-----------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 11111 122333333333333346899999999874
No 275
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.63 E-value=0.018 Score=57.84 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=69.0
Q ss_pred HHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEE---EcCccCHHHHHHHHHHHhCCC-CC-
Q 041843 71 LEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVV---VSKDLQLEKIQETIGKKIGLY-TD- 145 (800)
Q Consensus 71 ~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~~~-~~- 145 (800)
.+.+...+..+++...++|.|+.|+||||+++.++.... .....+++. +...... .+++...... ..
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhH----HHHHHHhccccccc
Confidence 344444554444567899999999999999999998872 223333332 2111111 2332222111 10
Q ss_pred ---CCCCCCHHHHHHHHHHHhc-CCceEEEEccccchhhhhhcCCcCCCCcEEEEEeCCccc
Q 041843 146 ---SWKSKSLEEKAQDIFKTLS-KKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDV 203 (800)
Q Consensus 146 ---~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~~~~~~~~~~~~~s~iivTtR~~~~ 203 (800)
..+..+.......+...+. -.+-++|+|.+...+.+..+...+..|..||+||-+..+
T Consensus 170 ~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 170 VGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDV 231 (270)
T ss_pred ccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHH
Confidence 0001111111223333333 578899999997776666554444468889999975444
No 276
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.62 E-value=0.0061 Score=57.60 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEE
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVV 122 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 122 (800)
...+|+|+|+.|+||||+|+.++... ...+..+++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEe
Confidence 45799999999999999999999988 34555555553
No 277
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.61 E-value=0.0009 Score=64.36 Aligned_cols=107 Identities=26% Similarity=0.275 Sum_probs=61.0
Q ss_pred CCCcceEEEeecCCCcccccccccCCCCCcEEEccCc--cccccccccccccccccEEeccCCCCcccc--hhhhcCccC
Q 041843 439 TCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDN--IMLRQLPTGISKLVSLQLLDISYTSVTGLP--EGLKALVNL 514 (800)
Q Consensus 439 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~--~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp--~~i~~l~~L 514 (800)
.+..|..|.+.+..++.+.. |-.+++|+.|.+|.| +....++-...++++|++|++++|+|+.+. ..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 34455555555555544432 456777788888777 444445545556677888888777666421 134566677
Q ss_pred ceeccccccccc--ccchhhhCCCCCCcEEEeeec
Q 041843 515 KCLNLDWADELV--EVPQQLLSNFSRLRVLRMFAT 547 (800)
Q Consensus 515 ~~L~l~~~~~l~--~lp~~~~~~L~~L~~L~l~~~ 547 (800)
..|++.+|.... .--..++.-+++|.+|+-...
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 777777664322 111223455666666665444
No 278
>PRK09354 recA recombinase A; Provisional
Probab=96.57 E-value=0.0069 Score=62.59 Aligned_cols=86 Identities=17% Similarity=0.163 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS---WKSKSLEEKAQDI 159 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 159 (800)
.-+++-|+|++|+||||||.+++... ......++|++....++.. .++.++...+. ..+...++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45799999999999999999998776 3455778999988877653 34444432111 1233455555555
Q ss_pred HHHhc-CCceEEEEcccc
Q 041843 160 FKTLS-KKKFALLLDDLW 176 (800)
Q Consensus 160 ~~~l~-~~~~LlvlDdv~ 176 (800)
...++ +..-+||+|-|.
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55543 456799999974
No 279
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.57 E-value=0.011 Score=58.93 Aligned_cols=92 Identities=18% Similarity=0.337 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-CEEEEEEEcC-ccCHHHHHHHHHHHhCCCC----CCCCCCCHHHH-
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF-DYVIWVVVSK-DLQLEKIQETIGKKIGLYT----DSWKSKSLEEK- 155 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~- 155 (800)
.-+.++|.|.+|+||||||+++++.. ..+| +.++++-+.+ .....++.+++...-.... .........+.
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 45789999999999999999999987 3333 3455555544 3456666666654321110 00011112111
Q ss_pred -----HHHHHHHh---cCCceEEEEccccc
Q 041843 156 -----AQDIFKTL---SKKKFALLLDDLWE 177 (800)
Q Consensus 156 -----~~~l~~~l---~~~~~LlvlDdv~~ 177 (800)
.-.+.+++ +++.+|+++||+..
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 22233444 38999999999843
No 280
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0064 Score=68.80 Aligned_cols=152 Identities=20% Similarity=0.246 Sum_probs=92.6
Q ss_pred cccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccC--CC--CCCEEEEEEEcCccCHHHHHHHHHH
Q 041843 63 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN--PT--DFDYVIWVVVSKDLQLEKIQETIGK 138 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~--~~--~f~~~~wv~~~~~~~~~~~~~~i~~ 138 (800)
.++||++++.++++.|... ...--.++|.+|+|||++|.-++.+.... .. ....++-++ +..
T Consensus 171 PvIGRd~EI~r~iqIL~RR-~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD-------------~g~ 236 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRR-TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD-------------LGS 236 (786)
T ss_pred CCcChHHHHHHHHHHHhcc-CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec-------------HHH
Confidence 4799999999999999764 22234678999999999999999887321 00 111111111 111
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhcC-CceEEEEccccch----------hhhhhcCCc-CCCC-cE-EEEEeCCccc-
Q 041843 139 KIGLYTDSWKSKSLEEKAQDIFKTLSK-KKFALLLDDLWER----------VDLKKIGVP-LPKN-SA-VVFTTRFVDV- 203 (800)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~----------~~~~~~~~~-~~~~-s~-iivTtR~~~~- 203 (800)
-+.. ..-..+.+++.+.+.+.++. .++.|++|.+-.. .|...+..| +..| -+ |--||-++.-
T Consensus 237 LvAG---akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk 313 (786)
T COG0542 237 LVAG---AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRK 313 (786)
T ss_pred Hhcc---ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHH
Confidence 1111 11456788888888888764 4799999997321 122223233 4434 23 4445543221
Q ss_pred -----ccccCccceEEeccCChHHHHHHHHHHh
Q 041843 204 -----CGGMEARRKFKVACLSDEDAWELFREKV 231 (800)
Q Consensus 204 -----~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 231 (800)
+..-...+.+.++..+.+++.++++-..
T Consensus 314 ~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 314 YIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 1111345688999999999999987554
No 281
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.52 E-value=0.017 Score=57.39 Aligned_cols=89 Identities=16% Similarity=0.222 Sum_probs=56.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCC---------------
Q 041843 82 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS--------------- 146 (800)
Q Consensus 82 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--------------- 146 (800)
+...++.|+|++|+|||++|.+++... ...-..++|+..... ..++.+.+ .+++....+
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~ 96 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTE 96 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccc
Confidence 346899999999999999999997665 234568889888654 34444443 223321110
Q ss_pred ---CCCCCHHHHHHHHHHHhcC-CceEEEEcccc
Q 041843 147 ---WKSKSLEEKAQDIFKTLSK-KKFALLLDDLW 176 (800)
Q Consensus 147 ---~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 176 (800)
....+.+.....+.+.+.. +.-++|+|.+.
T Consensus 97 ~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 97 GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0122335556666666654 55688899864
No 282
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.51 E-value=0.015 Score=52.94 Aligned_cols=114 Identities=20% Similarity=0.147 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc---cCHHHHHHHHHHHhCCC--CC--CCCCCCHHH---
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD---LQLEKIQETIGKKIGLY--TD--SWKSKSLEE--- 154 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~--~~--~~~~~~~~~--- 154 (800)
..|-|++..|.||||+|...+-+. -++...+.++..-.. .+-..+++.+- .+... .. .....+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra---~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA---LGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 578888888999999999998887 344455666554333 23333333331 11000 00 001111111
Q ss_pred ----HHHHHHHHhc-CCceEEEEccccc--------hhhhhhcCCcCCCCcEEEEEeCCcc
Q 041843 155 ----KAQDIFKTLS-KKKFALLLDDLWE--------RVDLKKIGVPLPKNSAVVFTTRFVD 202 (800)
Q Consensus 155 ----~~~~l~~~l~-~~~~LlvlDdv~~--------~~~~~~~~~~~~~~s~iivTtR~~~ 202 (800)
..+..++.+. +.-=|+|||++-. .+++-++...-+.+..||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1222333333 3446999999832 2344444455566889999999743
No 283
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.51 E-value=0.0038 Score=66.91 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=40.1
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++||++.++.+...+..+ ..|.|.|++|+|||++|+.++...
T Consensus 20 ~~i~gre~vI~lll~aalag---~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG---ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC---CCEEEECCCChhHHHHHHHHHHHh
Confidence 46899999999999998876 689999999999999999999876
No 284
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.50 E-value=0.0028 Score=68.73 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=40.8
Q ss_pred CcccchhHHHHHHHHHhcc-----CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-----~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+++|.++.+++|++.|.. +...+++.++||+|+||||||+.+++-.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 3689999999999999832 2356899999999999999999999987
No 285
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.02 Score=64.11 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=77.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT 162 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 162 (800)
..+.+.++|++|.|||.||+++++.. ...|-.+.+ . ++.. .+...........+...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~--------~l~s-------k~vGesek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S--------ELLS-------KWVGESEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H--------HHhc-------cccchHHHHHHHHHHHH
Confidence 45689999999999999999999966 344433322 1 1111 01122223333334444
Q ss_pred hcCCceEEEEccccchh-------------hhhhcCCcC---CC--CcEEEEEeCCcccccc-----cCccceEEeccCC
Q 041843 163 LSKKKFALLLDDLWERV-------------DLKKIGVPL---PK--NSAVVFTTRFVDVCGG-----MEARRKFKVACLS 219 (800)
Q Consensus 163 l~~~~~LlvlDdv~~~~-------------~~~~~~~~~---~~--~s~iivTtR~~~~~~~-----~~~~~~~~l~~L~ 219 (800)
-+..++.|++|+++... ...++...+ .. +..||-||..+..... ..-+..+.++.-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 45789999999985321 112221111 12 3445555554444331 1235688999999
Q ss_pred hHHHHHHHHHHhCccc
Q 041843 220 DEDAWELFREKVGEET 235 (800)
Q Consensus 220 ~~e~~~l~~~~~~~~~ 235 (800)
.++..+.|+.+.....
T Consensus 412 ~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 412 LEERLEIFKIHLRDKK 427 (494)
T ss_pred HHHHHHHHHHHhcccC
Confidence 9999999999886433
No 286
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.13 Score=52.59 Aligned_cols=167 Identities=15% Similarity=0.068 Sum_probs=92.9
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhccc-------CCCCCCEEEEEEE-cCccCHHHHHHHHHHHhC
Q 041843 70 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVD-------NPTDFDYVIWVVV-SKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 70 ~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~-------~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~ 141 (800)
.++.+.+.+..+.-.++..++|..|.||+++|..+++.... ...+-+.+.+++. ......+++. ++.+.+.
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~ 82 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLY 82 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhc
Confidence 34556666666544567779999999999999999887511 1111212333321 1112222222 2222221
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchhh-----hhhcCCcCCCCcEEEEEeCC-cccccc-cCccceEE
Q 041843 142 LYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERVD-----LKKIGVPLPKNSAVVFTTRF-VDVCGG-MEARRKFK 214 (800)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-----~~~~~~~~~~~s~iivTtR~-~~~~~~-~~~~~~~~ 214 (800)
... .-.+.+-++|+|+++...+ +-.+....|+++.+|++|.+ ..+... ......++
T Consensus 83 ~~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 83 FSS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred cCC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 110 0014677888898864422 33333444556776665543 333322 23467899
Q ss_pred eccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHH
Q 041843 215 VACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIII 263 (800)
Q Consensus 215 l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 263 (800)
+.+++.++..+.+... + . + ++.+..++...+|.=.|+..+
T Consensus 146 f~~l~~~~l~~~l~~~-~-~----~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 146 VKEPDQQKILAKLLSK-N-K----E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred CCCCCHHHHHHHHHHc-C-C----C---hhHHHHHHHHcCCHHHHHHHH
Confidence 9999999999888654 1 1 1 345666777777633455543
No 287
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.44 E-value=0.02 Score=54.23 Aligned_cols=124 Identities=16% Similarity=0.188 Sum_probs=63.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCC--C----------CCC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS--W----------KSK 150 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~----------~~~ 150 (800)
...+++|.|+.|+|||||++.++..... ....+++.-. .+......+.+.++..... . ..-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP----QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC----CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 3478999999999999999999887621 1223333211 1111111122222111000 0 001
Q ss_pred C-HHHHHHHHHHHhcCCceEEEEccccchh------hhhhcCCcCCCCcEEEEEeCCcccccccCccceEEe
Q 041843 151 S-LEEKAQDIFKTLSKKKFALLLDDLWERV------DLKKIGVPLPKNSAVVFTTRFVDVCGGMEARRKFKV 215 (800)
Q Consensus 151 ~-~~~~~~~l~~~l~~~~~LlvlDdv~~~~------~~~~~~~~~~~~s~iivTtR~~~~~~~~~~~~~~~l 215 (800)
+ -+...-.+.+.+-.++-++++|+..+.- .+.++...+..+..||++|.+...... .++.+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1 1222233555566788899999975321 122222222336778888887666542 3444444
No 288
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.086 Score=58.08 Aligned_cols=146 Identities=18% Similarity=0.168 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLS 164 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 164 (800)
.-|.++|++|+|||-||.+++... . .-++++..+ + ++. +.++ .+.+.....+.+.-.
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~---~-----~~fisvKGP---E-lL~---KyIG--------aSEq~vR~lF~rA~~ 758 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNS---N-----LRFISVKGP---E-LLS---KYIG--------ASEQNVRDLFERAQS 758 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhC---C-----eeEEEecCH---H-HHH---HHhc--------ccHHHHHHHHHHhhc
Confidence 458999999999999999998876 1 234555443 1 111 1112 222333333334445
Q ss_pred CCceEEEEccccch-------------hhhhhcCCcCC-----CCcEEEEEeCCccccc-----ccCccceEEeccCChH
Q 041843 165 KKKFALLLDDLWER-------------VDLKKIGVPLP-----KNSAVVFTTRFVDVCG-----GMEARRKFKVACLSDE 221 (800)
Q Consensus 165 ~~~~LlvlDdv~~~-------------~~~~~~~~~~~-----~~s~iivTtR~~~~~~-----~~~~~~~~~l~~L~~~ 221 (800)
-+++.++||.+++. ....++...+. .|.-|+-.|..++..+ .-.-++.+.-+.-++.
T Consensus 759 a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~ 838 (952)
T KOG0735|consen 759 AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEP 838 (952)
T ss_pred cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcH
Confidence 69999999998642 11222222111 2555555443333322 1122334444555667
Q ss_pred HHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 222 DAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 222 e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
|-.+++........... ....+.++.+.+|.-
T Consensus 839 eRl~il~~ls~s~~~~~----~vdl~~~a~~T~g~t 870 (952)
T KOG0735|consen 839 ERLEILQVLSNSLLKDT----DVDLECLAQKTDGFT 870 (952)
T ss_pred HHHHHHHHHhhccCCcc----ccchHHHhhhcCCCc
Confidence 77888877765433222 233556667777664
No 289
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.069 Score=52.39 Aligned_cols=168 Identities=17% Similarity=0.175 Sum_probs=90.9
Q ss_pred cccchhHHHHHHHHHhc---------cCC--CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHH
Q 041843 63 TVVGLQSQLEQVWRCLV---------QEP--AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 131 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~---------~~~--~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 131 (800)
++-|-|...+.+.+... .+. .-+-|.++||+|.|||-||++|+... . . -|.++|..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA-n-S------TFFSvSSS----- 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA-N-S------TFFSVSSS----- 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc-C-C------ceEEeehH-----
Confidence 45677777777777642 222 24689999999999999999999886 1 1 23344432
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEccccch---------hhhhhc--------CCcCCC--C
Q 041843 132 IQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-SKKKFALLLDDLWER---------VDLKKI--------GVPLPK--N 191 (800)
Q Consensus 132 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~---------~~~~~~--------~~~~~~--~ 191 (800)
++....... .+.+...+.+.- .+++-+|++|.++.. +.-+.+ .....+ |
T Consensus 201 ---DLvSKWmGE--------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 201 ---DLVSKWMGE--------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred ---HHHHHHhcc--------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 122221111 133444444443 468899999998632 112221 111111 5
Q ss_pred cEEEEEeCCccccccc---CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 192 SAVVFTTRFVDVCGGM---EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 192 s~iivTtR~~~~~~~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
..|+-.|..+-++... .....|-++--....-..+|+-+.|...... .++..+++.++..|.-
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~L---T~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVL---TEQDFKELARKTEGYS 335 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCcccc---chhhHHHHHhhcCCCC
Confidence 5566566654443321 1122333332233334456777776544222 2566777778877653
No 290
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0055 Score=58.61 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=35.3
Q ss_pred cccchhHHHHHHHHHhccC------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 63 TVVGLQSQLEQVWRCLVQE------------PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~~------------~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
++=|-.++++++.+..... ..++-|.++|++|.|||-+|++++++.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 3456677777776654320 356788999999999999999999987
No 291
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.41 E-value=0.0052 Score=57.03 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=43.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC-
Q 041843 87 IGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSK- 165 (800)
Q Consensus 87 v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~- 165 (800)
+.|.|.+|+|||++|.+++... ...++++.-....+.+ +.+.|.+-.......+. ..+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~---t~E~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIARHRKRRPAHWR---TIETPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCce---EeecHHHHHHHHHhc
Confidence 6799999999999999997652 2356666666665543 33333332211121111 12222333333321
Q ss_pred -CceEEEEccc
Q 041843 166 -KKFALLLDDL 175 (800)
Q Consensus 166 -~~~LlvlDdv 175 (800)
+.-.+++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 2347999996
No 292
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.41 E-value=0.027 Score=60.70 Aligned_cols=89 Identities=21% Similarity=0.169 Sum_probs=52.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc-cCHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTDS-WKSKSLEEKAQDIF 160 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 160 (800)
.+.+|.++|+.|+||||.|..++.... .....+.-+++... ....+.+..++.+++.+... ....+....+....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~---~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK---KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 467999999999999999999998872 22234444554322 12234455566666543211 11233344444444
Q ss_pred HHhcCCceEEEEccc
Q 041843 161 KTLSKKKFALLLDDL 175 (800)
Q Consensus 161 ~~l~~~~~LlvlDdv 175 (800)
+...+. -+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 444444 56888887
No 293
>PRK13695 putative NTPase; Provisional
Probab=96.40 E-value=0.0059 Score=57.55 Aligned_cols=23 Identities=48% Similarity=0.686 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 294
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.40 E-value=0.031 Score=51.22 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=67.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE---c------------------Ccc--------------
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV---S------------------KDL-------------- 127 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~---~------------------~~~-------------- 127 (800)
....+.|+|++|+||||+.+.+|...... ...+|+.- + +++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt----~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT----RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC----CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 34799999999999999999999886222 22344331 1 111
Q ss_pred -------CHHHH---HHHHHHHhCCCCCC----CCCCCHHHHHHHHHHHhcCCceEEEEccc----cchhhhhh--cCCc
Q 041843 128 -------QLEKI---QETIGKKIGLYTDS----WKSKSLEEKAQDIFKTLSKKKFALLLDDL----WERVDLKK--IGVP 187 (800)
Q Consensus 128 -------~~~~~---~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvlDdv----~~~~~~~~--~~~~ 187 (800)
...++ ..+.++..++.... ..-..-++..-.+.+.+-+++-+++-|.- +.+..|+- +...
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 11112 22222333322110 01122233344566677788999999974 32222222 2222
Q ss_pred CCC-CcEEEEEeCCccccccc
Q 041843 188 LPK-NSAVVFTTRFVDVCGGM 207 (800)
Q Consensus 188 ~~~-~s~iivTtR~~~~~~~~ 207 (800)
+.. |..|+++|-+..+...+
T Consensus 183 inr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhc
Confidence 332 99999999998886655
No 295
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.39 E-value=0.024 Score=59.21 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=40.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC---CCCCEEEEEEEcCccCHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDLQLEKIQETI 136 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i 136 (800)
...++-|+|++|+|||++|.+++....... ..-..++|++....++...+.+..
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~ 157 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMA 157 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHH
Confidence 457899999999999999999987752111 112489999999888877765443
No 296
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.38 E-value=0.013 Score=55.12 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=45.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHhCCCC-CCCCCCCHHHHHH-HHHHH
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKIGLYT-DSWKSKSLEEKAQ-DIFKT 162 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~-~l~~~ 162 (800)
++.++|++|+||||+++.++.... .....++.++..... ...+.+.......+... ......+..+... .+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~---~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK---KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 688999999999999999998872 222344445543211 22222333333333211 1112234444443 33333
Q ss_pred hcCCceEEEEcccc
Q 041843 163 LSKKKFALLLDDLW 176 (800)
Q Consensus 163 l~~~~~LlvlDdv~ 176 (800)
..+..-++|+|-.-
T Consensus 79 ~~~~~d~viiDt~g 92 (173)
T cd03115 79 REENFDVVIVDTAG 92 (173)
T ss_pred HhCCCCEEEEECcc
Confidence 34444466677763
No 297
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.37 E-value=0.0098 Score=56.89 Aligned_cols=37 Identities=24% Similarity=0.165 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 125 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 125 (800)
++.|.|++|+|||++|.+++.... .....++|++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~ 37 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE 37 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC
Confidence 368999999999999999988762 3445678887654
No 298
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.36 E-value=0.013 Score=58.74 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=41.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccc---CCCCCCEEEEEEEcCccCHHHHHHHHHHHh
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVD---NPTDFDYVIWVVVSKDLQLEKIQETIGKKI 140 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 140 (800)
...+.=|+|++|+|||+||.+++-...- ..+.-..++|++....++.+.+.+ |++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhcc
Confidence 3468999999999999999888755411 122345799999999998888764 45543
No 299
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.0046 Score=54.87 Aligned_cols=25 Identities=48% Similarity=0.539 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...|+|+|++|+||||+++.+++..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4579999999999999999999987
No 300
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.30 E-value=0.01 Score=56.92 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
-+++.|.|++|+||||+++.+....
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998877
No 301
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.30 E-value=0.038 Score=57.05 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=42.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC---CCCCCEEEEEEEcCccCHHHHHHHHHHHhCC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDN---PTDFDYVIWVVVSKDLQLEKIQETIGKKIGL 142 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 142 (800)
...++-|+|++|+|||+++.+++-..... ...-..++|++....++.+++.+ +++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 45789999999999999999877543111 12235899999999888888765 4555543
No 302
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.29 E-value=0.023 Score=52.93 Aligned_cols=122 Identities=13% Similarity=0.125 Sum_probs=62.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-----CEEEEEEEcCccCH--HHHHHHHHHHhCCCCCCCCCCCHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF-----DYVIWVVVSKDLQL--EKIQETIGKKIGLYTDSWKSKSLEEK 155 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f-----~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~ 155 (800)
.-.+++|.|+.|.|||||++.++.......+.. ..+.++ .+.... ..+.+.+... .. ..-..-+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~--~~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WD--DVLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CC--CCCCHHHHH
Confidence 347999999999999999999988762221111 112222 222111 1222222210 01 111222333
Q ss_pred HHHHHHHhcCCceEEEEccccch------hhhhhcCCcCCCCcEEEEEeCCcccccccCccceEEe
Q 041843 156 AQDIFKTLSKKKFALLLDDLWER------VDLKKIGVPLPKNSAVVFTTRFVDVCGGMEARRKFKV 215 (800)
Q Consensus 156 ~~~l~~~l~~~~~LlvlDdv~~~------~~~~~~~~~~~~~s~iivTtR~~~~~~~~~~~~~~~l 215 (800)
.-.+.+.+-.++-++++|+-... ..+.++.... +..||++|.+..... ..++.+.+
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 33455666678889999996432 1122222222 466777887665543 23444444
No 303
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.29 E-value=0.017 Score=60.98 Aligned_cols=84 Identities=24% Similarity=0.352 Sum_probs=50.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KSKSLEEKAQDIF 160 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 160 (800)
..++.|.|.+|+|||||+.+++.... .....++|++.... ..++. .-+..++...+.. ...+.++..+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 47999999999999999999998872 33356788876543 33332 2233444322211 1223333333332
Q ss_pred HHhcCCceEEEEcccc
Q 041843 161 KTLSKKKFALLLDDLW 176 (800)
Q Consensus 161 ~~l~~~~~LlvlDdv~ 176 (800)
..+.-++|+|.+.
T Consensus 156 ---~~~~~lVVIDSIq 168 (372)
T cd01121 156 ---ELKPDLVIIDSIQ 168 (372)
T ss_pred ---hcCCcEEEEcchH
Confidence 2366788889874
No 304
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.27 E-value=0.0079 Score=58.46 Aligned_cols=61 Identities=21% Similarity=0.239 Sum_probs=38.1
Q ss_pred HHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHH
Q 041843 70 QLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 131 (800)
Q Consensus 70 ~~~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 131 (800)
...++.+.+.. .++..+|+|+|++|+|||||.-++...+ ...++--.++=|+-+.+++--.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGA 75 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGA 75 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCc
Confidence 34455555544 3467899999999999999999999888 3334444666666666665433
No 305
>PRK04328 hypothetical protein; Provisional
Probab=96.25 E-value=0.02 Score=57.31 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=32.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 126 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 126 (800)
...++.|.|++|+|||+||.++.... ......++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 45799999999999999999987765 234567888887653
No 306
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.013 Score=55.71 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
++.+|+|.|.+|+||||+|+.++..+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999998
No 307
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.24 E-value=0.017 Score=52.35 Aligned_cols=100 Identities=23% Similarity=0.226 Sum_probs=55.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT 162 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 162 (800)
...+++|.|+.|.|||||++.++.... .....+|++-.. .+.... .-..-+...-.+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~~~~-------------~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTWGSTV-------------KIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEECCeE-------------EEEEEc---cCCHHHHHHHHHHHH
Confidence 347999999999999999999987752 223334432110 000000 011112223345556
Q ss_pred hcCCceEEEEccccch------hhhhhcCCcCCCCcEEEEEeCCcccc
Q 041843 163 LSKKKFALLLDDLWER------VDLKKIGVPLPKNSAVVFTTRFVDVC 204 (800)
Q Consensus 163 l~~~~~LlvlDdv~~~------~~~~~~~~~~~~~s~iivTtR~~~~~ 204 (800)
+..++-++++|+.... ..+.++...+ +..||++|.+....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 6677889999997422 1222222222 35678888765544
No 308
>PRK10867 signal recognition particle protein; Provisional
Probab=96.24 E-value=0.036 Score=59.60 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCC-CCEEEEEEEc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD-FDYVIWVVVS 124 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~ 124 (800)
.+.+|.++|++|+||||.|..++.... .. ...+..|++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~---~~~G~kV~lV~~D 138 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK---KKKKKKVLLVAAD 138 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH---HhcCCcEEEEEcc
Confidence 367999999999999999999888762 22 3344555543
No 309
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.24 E-value=0.0049 Score=55.75 Aligned_cols=37 Identities=27% Similarity=0.225 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 123 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 123 (800)
..+|.|+|.+|+||||||+++.+.. ......+.+++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LDg 38 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLDG 38 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEecC
Confidence 4689999999999999999999998 444556666653
No 310
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.028 Score=52.81 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=63.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC--ccCHHHHHHHHHHHhCCCCC--CCCCCCH------
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK--DLQLEKIQETIGKKIGLYTD--SWKSKSL------ 152 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~--~~~~~~~------ 152 (800)
...+++|.|+.|.|||||++.++.-.. .....+++.-.. ...... ....++.... .....+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD----PTSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC----CCCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhC
Confidence 347999999999999999999988762 122333332111 001111 1111111000 0000111
Q ss_pred --HHHHHHHHHHhcCCceEEEEccccch------hhhhhcCCcCCCCcEEEEEeCCcccccccCccceEEe
Q 041843 153 --EEKAQDIFKTLSKKKFALLLDDLWER------VDLKKIGVPLPKNSAVVFTTRFVDVCGGMEARRKFKV 215 (800)
Q Consensus 153 --~~~~~~l~~~l~~~~~LlvlDdv~~~------~~~~~~~~~~~~~s~iivTtR~~~~~~~~~~~~~~~l 215 (800)
+...-.+...+-.++-++++|+-... ..+..+...+..+..||++|.+...... .++.+.+
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11222355556678889999997432 2222332233346778888887666543 3444444
No 311
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.039 Score=53.82 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=37.5
Q ss_pred cccchhHHHHHHHHHhcc---C---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 63 TVVGLQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~---~---------~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
++=|-+.++++|.+...- . ..++-|.++|.+|.|||-||+++++..
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc
Confidence 355788999999887642 1 346778999999999999999999987
No 312
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.20 E-value=0.0026 Score=61.22 Aligned_cols=151 Identities=18% Similarity=0.131 Sum_probs=77.9
Q ss_pred CCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCC----CCChh--hhcCCCCcEEEEecCcch
Q 041843 618 ADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNL----KHLTF--LVFAPNLKSISVRDCDDM 691 (800)
Q Consensus 618 ~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l----~~l~~--l~~l~~L~~L~l~~~~~l 691 (800)
.+-|.|++.....|..-.. +.... .....+-.+|+.+.+..+.-- +.+-. +..+.+|+.|+|..+...
T Consensus 154 a~kp~Le~vicgrNRleng-s~~~~-----a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 154 ADKPKLEVVICGRNRLENG-SKELS-----AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred ccCCCceEEEeccchhccC-cHHHH-----HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 4568888888877764321 11100 001112358888888776321 11222 356889999999886532
Q ss_pred hHhhccCCCCCcCcccCccCCcCCcccEeeccCcccccccCCCCCCCCCcceEeecCCCCCCCCCCCCCCCCCcceEEE-
Q 041843 692 EEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLKSIYWKPLPLPRLKELTVVDCDSLEKLPLDSNSANGRRILIR- 770 (800)
Q Consensus 692 ~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~L~~L~~~~n~~~l~~~~i~- 770 (800)
..-.. .-+......+.|..|.+.+|-- ..- +.-.-++..+=...|+|..||...|...+..+...
T Consensus 228 ~~gS~---------~La~al~~W~~lrEL~lnDCll-s~~----G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~ 293 (388)
T COG5238 228 LEGSR---------YLADALCEWNLLRELRLNDCLL-SNE----GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDIS 293 (388)
T ss_pred hhhHH---------HHHHHhcccchhhhccccchhh-ccc----cHHHHHHHhhhhcCCCccccccchhhhcCceeeeec
Confidence 21100 0112334566678888877621 110 00001111111224778888888877665554442
Q ss_pred ------eehhccccceecchhhhh
Q 041843 771 ------GDEDWWRRLQWEDEATQN 788 (800)
Q Consensus 771 ------~~~~~~~~l~~~~~~~~~ 788 (800)
+....+..++.++|.+++
T Consensus 294 l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 294 LNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhhhhcccHHHHHHHHccCcchh
Confidence 223445566667666655
No 313
>PRK07667 uridine kinase; Provisional
Probab=96.20 E-value=0.0097 Score=57.04 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=29.2
Q ss_pred HHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 72 EQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 72 ~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.+.+.+.. .+...+|+|.|++|+||||+|+.+....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455555544 2345799999999999999999999887
No 314
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.20 E-value=0.033 Score=53.69 Aligned_cols=128 Identities=14% Similarity=0.173 Sum_probs=72.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE---c-------------------Ccc-------------
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV---S-------------------KDL------------- 127 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~---~-------------------~~~------------- 127 (800)
.-.+|+|+|+.|+|||||...+..--.. -...+++.. . +.+
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~p----t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKP----TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC----CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 3469999999999999999988655411 122222221 1 111
Q ss_pred -----------CHHHHHHHHHHHhCCCCCC-----CCCCCHHHHHHHHHHHhcCCceEEEEcccc----c--hhhhhhcC
Q 041843 128 -----------QLEKIQETIGKKIGLYTDS-----WKSKSLEEKAQDIFKTLSKKKFALLLDDLW----E--RVDLKKIG 185 (800)
Q Consensus 128 -----------~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~----~--~~~~~~~~ 185 (800)
...+....++..+++.... ..-..-++..-.+.+.+-..+-+|+.|+-- . ...+-.+.
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 1122344455554543111 112223344456777788889999999852 1 12233332
Q ss_pred CcCC--CCcEEEEEeCCcccccccCccceEEec
Q 041843 186 VPLP--KNSAVVFTTRFVDVCGGMEARRKFKVA 216 (800)
Q Consensus 186 ~~~~--~~s~iivTtR~~~~~~~~~~~~~~~l~ 216 (800)
..+. .|..||+.|-++.++..+ ++++.+.
T Consensus 186 ~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 186 RELNKERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 3332 277899999999888753 4455443
No 315
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.19 E-value=0.025 Score=54.41 Aligned_cols=23 Identities=43% Similarity=0.691 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+|+|.|++|+||||+|+++....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999988
No 316
>PRK14974 cell division protein FtsY; Provisional
Probab=96.19 E-value=0.044 Score=56.91 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccC--HHHHHHHHHHHhCCCCC-CCCCCCHHHHH-HH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ--LEKIQETIGKKIGLYTD-SWKSKSLEEKA-QD 158 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~-~~~~~~~~~~~-~~ 158 (800)
++.+++++|+.|+||||++..++.... ...+ .++.+... .+. ..+-++..+..++.+.- .....+....+ +.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~-~V~li~~D-t~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGF-SVVIAAGD-TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCC-eEEEecCC-cCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 468999999999999999998888762 1223 34444432 222 22234455666654321 11223333332 22
Q ss_pred HHHHhcCCceEEEEcccc
Q 041843 159 IFKTLSKKKFALLLDDLW 176 (800)
Q Consensus 159 l~~~l~~~~~LlvlDdv~ 176 (800)
+...-....=++++|-.-
T Consensus 215 i~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHHhCCCCEEEEECCC
Confidence 222212222388999873
No 317
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.045 Score=57.10 Aligned_cols=88 Identities=19% Similarity=0.191 Sum_probs=48.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFK 161 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 161 (800)
..++|+|+|++|+||||++..++... ......+..++..... ...+-+...+..++.+. ....+.....+.+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L---~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv--~v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF---HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV--IAVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH---HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE--EecCCHHHHHHHHHH
Confidence 35799999999999999999999877 2333345555554321 11222233333344322 112344444444433
Q ss_pred HhcC-CceEEEEccc
Q 041843 162 TLSK-KKFALLLDDL 175 (800)
Q Consensus 162 ~l~~-~~~LlvlDdv 175 (800)
.-.. +.=++++|-.
T Consensus 315 lk~~~~~DvVLIDTa 329 (436)
T PRK11889 315 FKEEARVDYILIDTA 329 (436)
T ss_pred HHhccCCCEEEEeCc
Confidence 2221 2347778876
No 318
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.18 E-value=0.0093 Score=62.93 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
-.+++|.|+.|.||||||+.+.--.
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHccc
Confidence 3689999999999999999996654
No 319
>PRK06547 hypothetical protein; Provisional
Probab=96.16 E-value=0.0079 Score=56.12 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=26.4
Q ss_pred HHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 76 RCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 76 ~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+... ...+|+|.|++|+||||+|+.+++..
T Consensus 8 ~~~~~~-~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 8 ARLCGG-GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHhhcC-CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 334443 67899999999999999999998875
No 320
>PHA00729 NTP-binding motif containing protein
Probab=96.14 E-value=0.0077 Score=57.99 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=27.9
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 73 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 73 ~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+.+.+... +...|+|+|.+|+||||||.++++..
T Consensus 7 ~~~~~l~~~-~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNN-GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcC-CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555554 55689999999999999999999875
No 321
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.02 Score=59.97 Aligned_cols=89 Identities=21% Similarity=0.262 Sum_probs=50.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc-cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFK 161 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 161 (800)
...+++++|+.|+||||++.+++..... ......+..++.... ....+-++...+.++.... ...+..+... ...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~-~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~l~~-~l~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVM-RFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--AVKDGGDLQL-ALA 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEecccccccHHHHHHHHHHHcCCceE--ecCCcccHHH-HHH
Confidence 3579999999999999999999987621 112245666654332 2334445555555554321 1112222222 233
Q ss_pred HhcCCceEEEEcccc
Q 041843 162 TLSKKKFALLLDDLW 176 (800)
Q Consensus 162 ~l~~~~~LlvlDdv~ 176 (800)
.+.++ -++++|..-
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 44554 456699973
No 322
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.01 Score=55.65 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.|.|.|++|+||||+|+.+++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999986
No 323
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.12 E-value=0.029 Score=52.59 Aligned_cols=121 Identities=18% Similarity=0.161 Sum_probs=62.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC--CC---CC--CEEEEEEEcCccCHHHHHHHHHHHhCCCCC--CCC--CCC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDN--PT---DF--DYVIWVVVSKDLQLEKIQETIGKKIGLYTD--SWK--SKS 151 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~--~~---~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~--~~~ 151 (800)
...+++|+|+.|+|||||.+.+..+.-.+ .. .+ ..+.|+ .+ .+.+..++.... ... .-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34799999999999999999986321000 00 01 012232 11 345555554321 111 111
Q ss_pred H-HHHHHHHHHHhcCC--ceEEEEccccch---h---hhhhcCCcC-CCCcEEEEEeCCcccccccCccceEEe
Q 041843 152 L-EEKAQDIFKTLSKK--KFALLLDDLWER---V---DLKKIGVPL-PKNSAVVFTTRFVDVCGGMEARRKFKV 215 (800)
Q Consensus 152 ~-~~~~~~l~~~l~~~--~~LlvlDdv~~~---~---~~~~~~~~~-~~~s~iivTtR~~~~~~~~~~~~~~~l 215 (800)
. +...-.+...+-.+ +-++++|+.... . .+.+....+ ..|..||++|.+...... .++++.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1 22223344555566 788999997432 1 122221112 136778888887665432 3445554
No 324
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.11 E-value=0.0025 Score=36.36 Aligned_cols=19 Identities=32% Similarity=0.607 Sum_probs=9.9
Q ss_pred ccEEeccCCCCcccchhhh
Q 041843 491 LQLLDISYTSVTGLPEGLK 509 (800)
Q Consensus 491 L~~L~L~~~~i~~lp~~i~ 509 (800)
|++||+++|.++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 325
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.10 E-value=0.0071 Score=65.44 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=53.7
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE-EEcC-ccCHHHHHHHHHHHhCCCCCCCCCC
Q 041843 73 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWV-VVSK-DLQLEKIQETIGKKIGLYTDSWKSK 150 (800)
Q Consensus 73 ~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv-~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~ 150 (800)
++++.+..=+.-+..+|+|++|+|||||++.+++.... .+-+..++| -+.. ...+.++.+.+-..+-... ...
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~--n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT---~D~ 479 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT--NNPECHLMVVLVDERPEEVTDMQRSVKGEVIAST---FDR 479 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh--cCCCeEEEEEEEeCchhhHHHHHHhccceEEEEC---CCC
Confidence 34444544335578999999999999999999987632 222333333 3332 3334444333311111001 111
Q ss_pred CH------HHHHHHHHHHh--cCCceEEEEccccc
Q 041843 151 SL------EEKAQDIFKTL--SKKKFALLLDDLWE 177 (800)
Q Consensus 151 ~~------~~~~~~l~~~l--~~~~~LlvlDdv~~ 177 (800)
.. ....-.+-+++ .++.+||++|++..
T Consensus 480 p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 480 PPSDHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 11 12222233333 68999999999843
No 326
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.09 E-value=0.026 Score=56.50 Aligned_cols=91 Identities=20% Similarity=0.181 Sum_probs=59.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHH---HHHHH
Q 041843 82 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLE---EKAQD 158 (800)
Q Consensus 82 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~~~ 158 (800)
+..+++=|+|+.|.||||+|.+++-.. +.....++|++....+++..+.......+.... -....+.+ +.++.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~-v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLL-VSQPDTGEQQLEIAEK 133 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhccee-EecCCCHHHHHHHHHH
Confidence 355789999999999999999988776 455558999999999988776554444221100 00222233 23333
Q ss_pred HHHHhcCCceEEEEcccc
Q 041843 159 IFKTLSKKKFALLLDDLW 176 (800)
Q Consensus 159 l~~~l~~~~~LlvlDdv~ 176 (800)
+......+--|+|+|.+-
T Consensus 134 ~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 134 LARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHhccCCCCEEEEecCc
Confidence 444334445788889874
No 327
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.09 E-value=0.016 Score=51.47 Aligned_cols=102 Identities=17% Similarity=0.334 Sum_probs=43.2
Q ss_pred CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccc-ccccccccccEEeccCCCCcccch-hhhcCccC
Q 041843 437 VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLP-TGISKLVSLQLLDISYTSVTGLPE-GLKALVNL 514 (800)
Q Consensus 437 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L 514 (800)
|.++.+|+.+.+.. .+..+....|..+.+|+.+.+.++ +..++ ..+.++.+|+.+.+.. .+..++. .+..+.+|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 45555666666553 355555555666666666666553 33333 2344455566666644 3444333 23445666
Q ss_pred ceecccccccccccchhhhCCCCCCcEEEee
Q 041843 515 KCLNLDWADELVEVPQQLLSNFSRLRVLRMF 545 (800)
Q Consensus 515 ~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~ 545 (800)
+.+.+..+ +..++...+.+. +|+.+.+.
T Consensus 84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 66666432 445555555555 66665554
No 328
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.08 E-value=0.0046 Score=54.93 Aligned_cols=22 Identities=36% Similarity=0.771 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 041843 87 IGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 87 v~I~G~~GiGKTtLa~~~~~~~ 108 (800)
|+|.|+.|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998884
No 329
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.06 E-value=0.0052 Score=47.42 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+|+|.|..|+||||+|+++.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998884
No 330
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.06 E-value=0.036 Score=56.08 Aligned_cols=89 Identities=20% Similarity=0.272 Sum_probs=49.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH--HHHHHHHHHhCCCC-CCCCCCCHHHH-HHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE--KIQETIGKKIGLYT-DSWKSKSLEEK-AQD 158 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~-~~~~~~~~~~~-~~~ 158 (800)
..+++.++|++|+||||++..++... ......+.++++.. +... +-+....+..+... ......+.... ...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l---~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL---KKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH---HhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 46899999999999999999998877 23335667776543 2222 22222334443221 00112223222 233
Q ss_pred HHHHhcCCceEEEEccc
Q 041843 159 IFKTLSKKKFALLLDDL 175 (800)
Q Consensus 159 l~~~l~~~~~LlvlDdv 175 (800)
+.....+..=++|+|-.
T Consensus 147 l~~~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTA 163 (272)
T ss_pred HHHHHHCCCCEEEEeCC
Confidence 44433344567888886
No 331
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.086 Score=58.27 Aligned_cols=170 Identities=15% Similarity=0.129 Sum_probs=94.1
Q ss_pred CCcccchhHHHHHHH---HHhccC--------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCH
Q 041843 61 EPTVVGLQSQLEQVW---RCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 129 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~---~~l~~~--------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 129 (800)
-.+.-|.++..+++. +.|.+. .-++-|.++|++|.|||.||++++.+. .+ ..| ..|.+.-+
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V-PFf------~iSGS~FV 220 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV-PFF------SISGSDFV 220 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC-Cce------eccchhhh
Confidence 346678887665554 455542 124678999999999999999999987 32 122 22221111
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh----------------hhhhcCCc---CCC
Q 041843 130 EKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV----------------DLKKIGVP---LPK 190 (800)
Q Consensus 130 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~---~~~ 190 (800)
+ .+.........+.+.+.-+.-++++++|.++... .+.++... +..
T Consensus 221 e---------------mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 221 E---------------MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred h---------------hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 1 0122222333445555556778999999986431 22222111 222
Q ss_pred --CcEEEEEeCCcccc-----cccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 191 --NSAVVFTTRFVDVC-----GGMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 191 --~s~iivTtR~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
|..|+-.|..+++. ..-..++.+.++.-+...-.++++-++.......+-++.. |++.+-|.-
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~----iAr~tpGfs 355 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK----IARGTPGFS 355 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH----HhhhCCCcc
Confidence 33334344444443 2224456777777777777778876665544333323322 666666543
No 332
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.04 E-value=0.037 Score=54.29 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=68.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC-----ccCHHHHHHHHHHHhCCCCCC-----CCCCCH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-----DLQLEKIQETIGKKIGLYTDS-----WKSKSL 152 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~-----~~~~~~ 152 (800)
...+++|+|..|+||||+++.+..-. .... +.++..-.+ .....+-..+++..++...+. ..-..-
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45799999999999999999998876 2222 233333111 222344456666666543211 111222
Q ss_pred HHHHHHHHHHhcCCceEEEEccccchhh------hhhcCCcCCC--CcEEEEEeCCccccccc
Q 041843 153 EEKAQDIFKTLSKKKFALLLDDLWERVD------LKKIGVPLPK--NSAVVFTTRFVDVCGGM 207 (800)
Q Consensus 153 ~~~~~~l~~~l~~~~~LlvlDdv~~~~~------~~~~~~~~~~--~s~iivTtR~~~~~~~~ 207 (800)
+...-.+.+.+.-++-++|.|+.-+.-| .-.+...+.. |-..++.|-+-.+...+
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 2223356677888999999999744322 1111111111 56667777665555443
No 333
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.04 E-value=0.047 Score=54.13 Aligned_cols=41 Identities=27% Similarity=0.308 Sum_probs=31.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 126 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 126 (800)
....+.|.|++|+||||+|.+++.... .....++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 457999999999999999999876542 23457888887543
No 334
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.03 E-value=0.012 Score=52.19 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=33.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCC
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLY 143 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 143 (800)
+|.|.|++|+||||+|+.++++. . +.. .+.-.+++++++..++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---g--l~~---------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---G--LKL---------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---C--Cce---------eeccHHHHHHHHHcCCC
Confidence 78999999999999999999987 1 111 12346788888887764
No 335
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.03 E-value=0.018 Score=51.12 Aligned_cols=118 Identities=18% Similarity=0.349 Sum_probs=65.8
Q ss_pred ccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccc-ccccccccc
Q 041843 415 VRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLP-TGISKLVSL 491 (800)
Q Consensus 415 ~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L 491 (800)
+....+++.+.+.. .+..++ .|..+.+|+.+.+..+ +..++...|.+++.|+.+.+.++ +..++ ..+..+.+|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccc
Confidence 34445777788764 565665 4788989999999875 88888888999989999999764 34443 356669999
Q ss_pred cEEeccCCCCcccch-hhhcCccCceecccccccccccchhhhCCCCCCc
Q 041843 492 QLLDISYTSVTGLPE-GLKALVNLKCLNLDWADELVEVPQQLLSNFSRLR 540 (800)
Q Consensus 492 ~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~ 540 (800)
+.+++..+ +..++. .+.+. +|+.+.+.. .+..++...+.++++|+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence 99999765 666654 35666 899988875 35777887788877764
No 336
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.03 E-value=0.027 Score=48.44 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=34.9
Q ss_pred cccchhHHHHHHHHHhc----c--CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 63 TVVGLQSQLEQVWRCLV----Q--EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~----~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++|.+-..+.+.+++. + ...+-|+.++|+.|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46777666666666553 2 2456789999999999999999998884
No 337
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.02 E-value=0.021 Score=54.97 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCC-------CCCEEEEEEEcCc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPT-------DFDYVIWVVVSKD 126 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-------~f~~~~wv~~~~~ 126 (800)
..++.|.|++|+||||++.+++........ .-..++|++...+
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 368999999999999999999888743221 2247888877665
No 338
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.02 E-value=0.049 Score=56.69 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=42.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccc---CCCCCCEEEEEEEcCccCHHHHHHHHHHHhCC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVD---NPTDFDYVIWVVVSKDLQLEKIQETIGKKIGL 142 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 142 (800)
...++-|+|++|+|||+|+.+++-.... ..+.-..++|++....|+.+++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4578889999999999999988654311 112235899999999999888765 4455544
No 339
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.00064 Score=65.43 Aligned_cols=69 Identities=25% Similarity=0.461 Sum_probs=38.2
Q ss_pred CCccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCccccc-ccccCCCCCcEEEccCc
Q 041843 406 SGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITG-GFFQSMPCLTVLKMSDN 475 (800)
Q Consensus 406 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~Ls~~ 475 (800)
.++.++ .-...++.+..|+++-|+|.++.++..|.+|+.|+|..|.+..+.. ..+.++++||+|.|..|
T Consensus 29 ~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 29 CGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred CCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 344444 3333455566666666666666666666666666666665554432 12455666666666555
No 340
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.00 E-value=0.016 Score=57.08 Aligned_cols=102 Identities=13% Similarity=0.105 Sum_probs=59.8
Q ss_pred CcccchhHHHHHHHHHhcc------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET 135 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 135 (800)
..++|..-..+.|+..+.. ..++-++++||+.|+||.-+++.+++...+..-+- .....
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S---------------~~V~~ 146 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS---------------PFVHH 146 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc---------------hhHHH
Confidence 4577877777777766653 24567999999999999999999999873221111 11222
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEccccch
Q 041843 136 IGKKIGLYTDSWKSKSLEEKAQDIFKTLS-KKKFALLLDDLWER 178 (800)
Q Consensus 136 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~ 178 (800)
.......+.+.......+++...+++.++ -++-|+|+|+++..
T Consensus 147 fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 147 FVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 22222222211111122233333444433 37899999999754
No 341
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.00 E-value=0.012 Score=57.91 Aligned_cols=60 Identities=25% Similarity=0.332 Sum_probs=42.9
Q ss_pred HHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHH
Q 041843 72 EQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 132 (800)
Q Consensus 72 ~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 132 (800)
.+++..+.. .++..+|+|+|.+|+|||||.-++...+ ...++--.++=|+-|.+++--.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccc
Confidence 455555554 3567899999999999999999998888 44445456666666666654333
No 342
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.028 Score=51.68 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...++|.||+|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999998774
No 343
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.96 E-value=0.035 Score=52.62 Aligned_cols=118 Identities=21% Similarity=0.265 Sum_probs=62.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEc--CccCHHHHH------HHHHHHhCCCCC---CCCCCC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS--KDLQLEKIQ------ETIGKKIGLYTD---SWKSKS 151 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~~~------~~i~~~l~~~~~---~~~~~~ 151 (800)
...+++|.|+.|+|||||++.++.... .....+++.-. ...+..... .++++.++.... ....-+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 347999999999999999999988752 22333333211 111221111 113444443210 011111
Q ss_pred -HHHHHHHHHHHhcCCceEEEEccccch------hhhhhcCCcCCC--CcEEEEEeCCcccc
Q 041843 152 -LEEKAQDIFKTLSKKKFALLLDDLWER------VDLKKIGVPLPK--NSAVVFTTRFVDVC 204 (800)
Q Consensus 152 -~~~~~~~l~~~l~~~~~LlvlDdv~~~------~~~~~~~~~~~~--~s~iivTtR~~~~~ 204 (800)
-+...-.+.+.+-..+-++++|+.... ..+.++...+.. +..||++|.+....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 122233455666778899999997432 122222222222 56788888765543
No 344
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.022 Score=52.68 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.|.++|++|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 568899999999999999999887
No 345
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.94 E-value=0.033 Score=56.87 Aligned_cols=87 Identities=25% Similarity=0.332 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFK 161 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 161 (800)
..++++|+|+.|+||||++..++..... ......+..++..... ...+-+....+.++.+.. ...+..+....+ +
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~-~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l-~ 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL-EHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKAL-D 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-HcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHH-H
Confidence 3569999999999999999999887621 1122456666654321 122222333333443221 222333333333 3
Q ss_pred HhcCCceEEEEcc
Q 041843 162 TLSKKKFALLLDD 174 (800)
Q Consensus 162 ~l~~~~~LlvlDd 174 (800)
.+.+ .=+|++|.
T Consensus 269 ~~~~-~d~vliDt 280 (282)
T TIGR03499 269 RLRD-KDLILIDT 280 (282)
T ss_pred HccC-CCEEEEeC
Confidence 3343 34777775
No 346
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.92 E-value=0.036 Score=59.56 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=49.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKIGLYTDS-WKSKSLEEKAQDIF 160 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 160 (800)
.+.++.++|++|+||||.|..++.... ......+.-|++.... ...+-+...+...+.+.-. ....++.+......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~--~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK--KKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH--HhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 367999999999999999999988751 1122344555543221 1222233444544433211 12234444444444
Q ss_pred HHhcCCce-EEEEcccc
Q 041843 161 KTLSKKKF-ALLLDDLW 176 (800)
Q Consensus 161 ~~l~~~~~-LlvlDdv~ 176 (800)
+....+.+ ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 44433444 77778763
No 347
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.92 E-value=0.0039 Score=60.00 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=33.5
Q ss_pred cCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCCh---hh-----hcCCCCcEEEEecC
Q 041843 617 LADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLT---FL-----VFAPNLKSISVRDC 688 (800)
Q Consensus 617 l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~---~l-----~~l~~L~~L~l~~~ 688 (800)
+..+.+|+.|++.+|.....-. ..+....+.-+.|+.|.+.+|- ++.-. .+ ...|+|..|...++
T Consensus 210 l~y~~~LevLDlqDNtft~~gS------~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 210 LFYSHSLEVLDLQDNTFTLEGS------RYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHHhCcceeeeccccchhhhhH------HHHHHHhcccchhhhccccchh-hccccHHHHHHHhhhhcCCCccccccchh
Confidence 4556788888888876432100 0000111122558888888872 32211 11 14566666666554
Q ss_pred c
Q 041843 689 D 689 (800)
Q Consensus 689 ~ 689 (800)
.
T Consensus 283 e 283 (388)
T COG5238 283 E 283 (388)
T ss_pred h
Confidence 3
No 348
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.90 E-value=0.029 Score=52.76 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|.|+.|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34799999999999999999998875
No 349
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.89 E-value=0.017 Score=52.14 Aligned_cols=42 Identities=31% Similarity=0.325 Sum_probs=31.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHH
Q 041843 87 IGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQE 134 (800)
Q Consensus 87 v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 134 (800)
|.|+|++|+|||+||+.+++.. . ....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEecccccccccee
Confidence 6899999999999999999987 1 2344467777777776643
No 350
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.88 E-value=0.053 Score=56.54 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=39.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC---CCCCCEEEEEEEcCccCHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDN---PTDFDYVIWVVVSKDLQLEKIQET 135 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~ 135 (800)
...++-|+|++|+|||+++.+++...... ...-..++||+....++.+.+.+.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~ 149 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM 149 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH
Confidence 45789999999999999999998775211 011238999999988888776544
No 351
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.87 E-value=0.025 Score=52.58 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=59.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc--cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD--LQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIF 160 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 160 (800)
...+++|.|+.|+|||||.+.++... ......+++.-..- .+..+. ..+.++... .-..-+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHHH
Confidence 34799999999999999999998775 22334444432111 111111 111121110 1111222333455
Q ss_pred HHhcCCceEEEEccccch------hhhhhcCCcC-CCCcEEEEEeCCccc
Q 041843 161 KTLSKKKFALLLDDLWER------VDLKKIGVPL-PKNSAVVFTTRFVDV 203 (800)
Q Consensus 161 ~~l~~~~~LlvlDdv~~~------~~~~~~~~~~-~~~s~iivTtR~~~~ 203 (800)
+.+-..+-++++|+.... ..+..+...+ ..+..||++|.+...
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 566677889999997432 1122221222 236778888887654
No 352
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.053 Score=58.92 Aligned_cols=89 Identities=21% Similarity=0.326 Sum_probs=47.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFK 161 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 161 (800)
...+++|+|+.|+||||++..++.... .......+..++..... ...+......+.++.... ...+..+... ..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~-aL~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLD-LLE 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHH-HHH
Confidence 357999999999999999999987752 12223445555543211 112222233333332211 1122233333 333
Q ss_pred HhcCCceEEEEcccc
Q 041843 162 TLSKKKFALLLDDLW 176 (800)
Q Consensus 162 ~l~~~~~LlvlDdv~ 176 (800)
.+.+ .=+||+|..-
T Consensus 425 ~l~~-~DLVLIDTaG 438 (559)
T PRK12727 425 RLRD-YKLVLIDTAG 438 (559)
T ss_pred Hhcc-CCEEEecCCC
Confidence 3433 4588889873
No 353
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.84 E-value=0.046 Score=52.81 Aligned_cols=96 Identities=24% Similarity=0.319 Sum_probs=58.1
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC-ccCHHHHHHHHHHHhCCCC----CCCC
Q 041843 74 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEKIQETIGKKIGLYT----DSWK 148 (800)
Q Consensus 74 l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~----~~~~ 148 (800)
.++.+..=..-+.++|.|.+|+|||+|+..+++.. .-+.++++-+.+ .....++.+++...-.... ....
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~ 79 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS 79 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccc
Confidence 34444442234789999999999999999999987 234457777754 3566777776654311110 0001
Q ss_pred CCCHHH----------HHHHHHHHhcCCceEEEEcccc
Q 041843 149 SKSLEE----------KAQDIFKTLSKKKFALLLDDLW 176 (800)
Q Consensus 149 ~~~~~~----------~~~~l~~~l~~~~~LlvlDdv~ 176 (800)
...... .++.+++ +++.+|+++||+.
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHH--TTSEEEEEEETHH
T ss_pred hhhHHHHhhhhccchhhhHHHhh--cCCceeehhhhhH
Confidence 112211 1222333 6899999999983
No 354
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.84 E-value=0.029 Score=56.53 Aligned_cols=118 Identities=19% Similarity=0.185 Sum_probs=63.0
Q ss_pred cchhH-HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCC
Q 041843 65 VGLQS-QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLY 143 (800)
Q Consensus 65 vgr~~-~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 143 (800)
.|... ..+.+.+++.. ....|.|.|+.|.||||+++++.... ...-..++.+.-........ ..+....
T Consensus 62 lg~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~~i---~~~~~~iitiEdp~E~~~~~-----~~q~~v~ 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNIITVEDPVEYQIPG-----INQVQVN 131 (264)
T ss_pred cCCCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEEEECCCceecCCC-----ceEEEeC
Confidence 34333 33444444433 34689999999999999999987776 22222333332221111110 0111111
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchhhhhhcCCcCCCCcEEEEEe
Q 041843 144 TDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTT 198 (800)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~s~iivTt 198 (800)
. .... .....+...++..+=.++++++.+.+....+......|.. ++||
T Consensus 132 ~--~~~~---~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~tGh~-v~tT 180 (264)
T cd01129 132 E--KAGL---TFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAALTGHL-VLST 180 (264)
T ss_pred C--cCCc---CHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHHcCCc-EEEE
Confidence 0 0111 2345566677788899999999887765544333223433 4554
No 355
>PRK08233 hypothetical protein; Provisional
Probab=95.83 E-value=0.0079 Score=57.23 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+|+|.|++|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4799999999999999999999876
No 356
>PRK05973 replicative DNA helicase; Provisional
Probab=95.82 E-value=0.06 Score=52.78 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=34.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 136 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 136 (800)
..++.|.|.+|+|||++|.+++.... .....+++++...+ ..++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEeCC--HHHHHHHH
Confidence 47999999999999999999987762 23456777776654 34444443
No 357
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.81 E-value=0.13 Score=52.61 Aligned_cols=136 Identities=17% Similarity=0.168 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhCCceeeeccCCCCCCCccccCCCCCcccchhHHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHH
Q 041843 24 KVAKMLRDVRALKGDGVFEEVAAPAPESISVADERPTEPTVVGLQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLL 101 (800)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgr~~~~~~l~~~l~~~--~~~~vv~I~G~~GiGKTtLa 101 (800)
.+...+.+++.-.+++..-........ ......|+ |- ..|-..|..+ +..+++-|+|+.|+||||||
T Consensus 2 ~l~~~~~~i~k~~g~~~i~~lg~~~~~--~~~~~i~T-----G~----~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLa 70 (322)
T PF00154_consen 2 ALEKALKQIEKKFGKGSIMRLGDNAES--QNIEVIST-----GS----PALDYALGIGGLPRGRIVEIYGPESSGKTTLA 70 (322)
T ss_dssp HHHHHHHHHHHHHTTTSSEETTS-C-G--CSS-EE-------S-----HHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred hHHHHHHHHHHHhCCCceeecCCcccc--cccceEec-----CC----cccchhhccCccccCceEEEeCCCCCchhhhH
Confidence 466778888888777633222211111 01111111 11 2233334322 34579999999999999999
Q ss_pred HHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHHHHHhcC-CceEEEEccccc
Q 041843 102 TQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KSKSLEEKAQDIFKTLSK-KKFALLLDDLWE 177 (800)
Q Consensus 102 ~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~ 177 (800)
..+.... +.....++|++....++... +..++...++. .+...++......+.++. .--++|+|-|..
T Consensus 71 L~~ia~~---q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 71 LHAIAEA---QKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHHH---HHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT
T ss_pred HHHHHhh---hcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcc
Confidence 9998876 34567899999988766543 33344332221 234456666666666654 346889999854
Q ss_pred h
Q 041843 178 R 178 (800)
Q Consensus 178 ~ 178 (800)
.
T Consensus 143 l 143 (322)
T PF00154_consen 143 L 143 (322)
T ss_dssp -
T ss_pred c
Confidence 3
No 358
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.80 E-value=0.05 Score=56.36 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=40.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccc---CCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVD---NPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
...++.|+|++|+||||++..++..... .......++|++....+...++. .+++..+
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~-~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLL-AIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 4589999999999999999998764311 11122467999988877777643 3444443
No 359
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.79 E-value=0.0056 Score=52.70 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCCE
Q 041843 87 IGLYGMGGVGKTTLLTQINNKFVDNPTDFDY 117 (800)
Q Consensus 87 v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~ 117 (800)
|.|+|.+|+||||+|++++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 6899999999999999999987 556643
No 360
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.78 E-value=0.074 Score=55.44 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=42.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccc--CC-CCCCEEEEEEEcCccCHHHHHHHHHHHhCC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVD--NP-TDFDYVIWVVVSKDLQLEKIQETIGKKIGL 142 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~--~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 142 (800)
...++-|+|++|+|||++|..++-.... .. ..-..++|++....+..+++.+ +++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~q-ia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQ-IAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHH-HHHHcCC
Confidence 4578899999999999999988755311 01 1223799999999988887654 4555543
No 361
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.77 E-value=0.0081 Score=54.52 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998876
No 362
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.75 E-value=0.0066 Score=51.75 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 041843 87 IGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 87 v~I~G~~GiGKTtLa~~~~~~~ 108 (800)
|.|+|++|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999988887
No 363
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.75 E-value=0.0083 Score=56.18 Aligned_cols=49 Identities=27% Similarity=0.396 Sum_probs=33.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 138 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 138 (800)
..+|+|-||-|+||||||+.++++. . +.. +.=.+...+-++.++.+.-+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l-~----~~~-~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL-G----FKV-FYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh-C----Cce-eeecccCChHHHHHHHhHHH
Confidence 4799999999999999999999998 2 322 22233444445555555544
No 364
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.75 E-value=0.046 Score=51.38 Aligned_cols=116 Identities=19% Similarity=0.265 Sum_probs=60.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCC--C-CCCCCH-------
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTD--S-WKSKSL------- 152 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~-~~~~~~------- 152 (800)
...+++|.|+.|.|||||++.++.... .....+++.-....... ..+...++.... . ......
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK----PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 347999999999999999999988752 22334444221110000 111111111000 0 011111
Q ss_pred --HHHHHHHHHHhcCCceEEEEccccchh------hhhhcCCcCC-CCcEEEEEeCCccccc
Q 041843 153 --EEKAQDIFKTLSKKKFALLLDDLWERV------DLKKIGVPLP-KNSAVVFTTRFVDVCG 205 (800)
Q Consensus 153 --~~~~~~l~~~l~~~~~LlvlDdv~~~~------~~~~~~~~~~-~~s~iivTtR~~~~~~ 205 (800)
+...-.+...+..++-++++|+....- .+.++...+. .|..||++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 122234556677888999999974321 1222222222 2677888888765543
No 365
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.75 E-value=0.049 Score=53.72 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=32.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 136 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 136 (800)
...++.|.|+.|+||||+|.+++.... .....+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~---~~g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL---QNGYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEEeCCC--CHHHHHHHH
Confidence 346999999999999999877766552 2224566666333 445555554
No 366
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.74 E-value=0.25 Score=61.32 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++-|.++|++|+|||.||+++|.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999999986
No 367
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.74 E-value=0.0094 Score=58.16 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+..+|+|.|++|+||||||+.++...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999876
No 368
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.74 E-value=0.017 Score=57.24 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=25.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 81 EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 81 ~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+...+++|.|+.|+|||||++.+....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999999887
No 369
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.73 E-value=0.025 Score=59.50 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=38.1
Q ss_pred CcccchhHHHHHHHHHhccC-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQE-------------PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~-------------~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++|.++..+.+.-++... -.++.|.++|++|+|||++|++++...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999888887665431 124789999999999999999999987
No 370
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.73 E-value=0.035 Score=55.83 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 82 PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 82 ~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+..+|.|.|..|+|||||+..+....
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999999886
No 371
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.72 E-value=0.018 Score=50.60 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=29.0
Q ss_pred HHHHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 69 SQLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 69 ~~~~~l~~~l~~~-~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
++.+++-+.+... ....+|.+.|.-|+||||+++.+++..
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444444444331 134699999999999999999999986
No 372
>PRK05439 pantothenate kinase; Provisional
Probab=95.72 E-value=0.085 Score=53.95 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 82 PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 82 ~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.+-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998865
No 373
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.053 Score=49.76 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWV 121 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 121 (800)
-..+.|.|+.|+|||||.+.++--. +..--.+.|-
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl---~p~~G~v~~~ 62 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLL---RPDAGEVYWQ 62 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHccc---CCCCCeEEec
Confidence 4689999999999999999998876 3333345554
No 374
>PTZ00301 uridine kinase; Provisional
Probab=95.71 E-value=0.0092 Score=57.58 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+|+|.|++|+||||+|+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4789999999999999999998775
No 375
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.032 Score=57.60 Aligned_cols=85 Identities=27% Similarity=0.354 Sum_probs=52.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
-.+|.|-|.+|||||||.-+++.+.+ ... .+.+|+-.+.....+ .-+++++...+.. ..-.+...+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~~Qik---lRA~RL~~~~~~l-~l~aEt~~e~I~~~l 164 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEESLQQIK---LRADRLGLPTNNL-YLLAETNLEDIIAEL 164 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCHHHHH---HHHHHhCCCccce-EEehhcCHHHHHHHH
Confidence 36999999999999999999999983 222 678777655433222 2334454433211 111122233344444
Q ss_pred c-CCceEEEEcccc
Q 041843 164 S-KKKFALLLDDLW 176 (800)
Q Consensus 164 ~-~~~~LlvlDdv~ 176 (800)
. .++-++|+|-+.
T Consensus 165 ~~~~p~lvVIDSIQ 178 (456)
T COG1066 165 EQEKPDLVVIDSIQ 178 (456)
T ss_pred HhcCCCEEEEeccc
Confidence 3 578999999985
No 376
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.70 E-value=0.016 Score=59.31 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=41.9
Q ss_pred CcccchhHHHHHHHHHhcc-----CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-----~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..|+|.++.++++++.+.. +.+.+++.+.||.|.||||||..+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999864 3457899999999999999999998887
No 377
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.70 E-value=0.029 Score=53.08 Aligned_cols=26 Identities=42% Similarity=0.529 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.-.+++|.|+.|+|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34799999999999999999998765
No 378
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.70 E-value=0.061 Score=52.31 Aligned_cols=26 Identities=42% Similarity=0.489 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|.|+.|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34799999999999999999998875
No 379
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.69 E-value=0.018 Score=64.98 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=57.3
Q ss_pred CCcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHh
Q 041843 61 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKI 140 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 140 (800)
-..++|.++.++.+...+... +.+.++|++|+||||+|+.+++... ...++..+|..- ...+...+++.+..++
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~---~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR---RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC---CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 356899999999888877765 4799999999999999999998862 334677888665 4446666777776655
Q ss_pred C
Q 041843 141 G 141 (800)
Q Consensus 141 ~ 141 (800)
+
T Consensus 104 G 104 (637)
T PRK13765 104 G 104 (637)
T ss_pred C
Confidence 4
No 380
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.69 E-value=0.039 Score=51.71 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.-.+++|.|+.|+|||||++.++.-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34799999999999999999998765
No 381
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.68 E-value=0.032 Score=60.88 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=32.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 126 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 126 (800)
...++.|.|.+|+|||||+.+++.... .....++|++....
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees 119 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES 119 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc
Confidence 347999999999999999999988873 23456788876543
No 382
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.67 E-value=0.014 Score=58.93 Aligned_cols=88 Identities=24% Similarity=0.321 Sum_probs=48.4
Q ss_pred HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCC
Q 041843 72 EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKS 151 (800)
Q Consensus 72 ~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 151 (800)
..+.+.+... .+-|.++|+.|+|||++++.+.... ...-..+.-++.+.......+++.+-..+.....
T Consensus 23 ~~ll~~l~~~--~~pvLl~G~~GtGKT~li~~~l~~l---~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~------ 91 (272)
T PF12775_consen 23 SYLLDLLLSN--GRPVLLVGPSGTGKTSLIQNFLSSL---DSDKYLVITINFSAQTTSNQLQKIIESKLEKRRG------ 91 (272)
T ss_dssp HHHHHHHHHC--TEEEEEESSTTSSHHHHHHHHHHCS---TTCCEEEEEEES-TTHHHHHHHHCCCTTECECTT------
T ss_pred HHHHHHHHHc--CCcEEEECCCCCchhHHHHhhhccC---CccccceeEeeccCCCCHHHHHHHHhhcEEcCCC------
Confidence 4445555444 3678999999999999999998775 2211134445555544444443322221111000
Q ss_pred HHHHHHHHHHHhcCCceEEEEcccc
Q 041843 152 LEEKAQDIFKTLSKKKFALLLDDLW 176 (800)
Q Consensus 152 ~~~~~~~l~~~l~~~~~LlvlDdv~ 176 (800)
....--.+|+.++++||+.
T Consensus 92 ------~~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 92 ------RVYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp ------EEEEEESSSEEEEEEETTT
T ss_pred ------CCCCCCCCcEEEEEecccC
Confidence 0000013688899999984
No 383
>PTZ00035 Rad51 protein; Provisional
Probab=95.67 E-value=0.12 Score=54.05 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=40.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccc---CCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVD---NPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
...++.|+|++|+|||||+..++-.... ..+.-..++|++....++.+++.+ +++..+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~-ia~~~g 177 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQ-IAERFG 177 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHH-HHHHhC
Confidence 4579999999999999999998765410 111234678999888777766433 344443
No 384
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.67 E-value=0.018 Score=53.44 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=33.7
Q ss_pred ccchhHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 64 VVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 64 ~vgr~~~~~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+||.+..++++.+.+.. ......|.|+|..|+||+.+|+.+++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 47888888888887754 1233677899999999999999998875
No 385
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.66 E-value=0.023 Score=59.96 Aligned_cols=107 Identities=13% Similarity=0.122 Sum_probs=58.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
...+.|.|+.|+||||+++.+.... .......++. +..+... ..... ..+-...+ .........+.+...+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~e--vg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEY--VHRNK-RSLINQRE--VGLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhh--hccCc-cceEEccc--cCCCCcCHHHHHHHhh
Confidence 4789999999999999999998876 2233333332 2222111 10000 00000000 1111123445567778
Q ss_pred cCCceEEEEccccchhhhhhcCCcCCCCcEEEEEeC
Q 041843 164 SKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTR 199 (800)
Q Consensus 164 ~~~~~LlvlDdv~~~~~~~~~~~~~~~~s~iivTtR 199 (800)
+..+=.|++|++.+.+...........|..|+.|.-
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~H 228 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAAETGHLVFGTLH 228 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 889999999999877665543222223555554444
No 386
>PRK14527 adenylate kinase; Provisional
Probab=95.66 E-value=0.018 Score=55.23 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|.|.|++|+||||+|+.+++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998876
No 387
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.66 E-value=0.01 Score=57.80 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|+|++|+||||||+.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 388
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.63 E-value=0.027 Score=59.23 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=39.0
Q ss_pred CCcccchhHHHHHHHHHhcc---------C----CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 61 EPTVVGLQSQLEQVWRCLVQ---------E----PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~---------~----~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...++|.++..+.+..++.. . -..+.+.++|+.|+|||++|+.++...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999988877743 0 114689999999999999999999887
No 389
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.62 E-value=0.052 Score=53.21 Aligned_cols=120 Identities=17% Similarity=0.216 Sum_probs=66.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCC-------------CCCEEEEEEEcC----cc--CHH--------------
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPT-------------DFDYVIWVVVSK----DL--QLE-------------- 130 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-------------~f~~~~wv~~~~----~~--~~~-------------- 130 (800)
...++|+||.|.|||||.+.+..-....++ .-..+.||+=.. .+ ++.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 379999999999999999999874421111 113466654111 11 111
Q ss_pred --------HHHHHHHHHhCCCC---CCCCC-CCHHHHHHHHHHHhcCCceEEEEccccch------hhhhhcCCcCCC-C
Q 041843 131 --------KIQETIGKKIGLYT---DSWKS-KSLEEKAQDIFKTLSKKKFALLLDDLWER------VDLKKIGVPLPK-N 191 (800)
Q Consensus 131 --------~~~~~i~~~l~~~~---~~~~~-~~~~~~~~~l~~~l~~~~~LlvlDdv~~~------~~~~~~~~~~~~-~ 191 (800)
+...+.++++++.. ..... ..-+...-.+.+.|..++=|++||+--.. ..+-++...+.. |
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg 189 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG 189 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 33444455554431 11111 11222233466778899999999995322 222233233322 8
Q ss_pred cEEEEEeCCccc
Q 041843 192 SAVVFTTRFVDV 203 (800)
Q Consensus 192 s~iivTtR~~~~ 203 (800)
..|++.|-+-..
T Consensus 190 ~tIl~vtHDL~~ 201 (254)
T COG1121 190 KTVLMVTHDLGL 201 (254)
T ss_pred CEEEEEeCCcHH
Confidence 889999886544
No 390
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.61 E-value=0.015 Score=57.57 Aligned_cols=88 Identities=23% Similarity=0.267 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCC-CCEEEEEEEcCccCHHHHHHHHHHHhCCCC---------------CC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD-FDYVIWVVVSKDLQLEKIQETIGKKIGLYT---------------DS 146 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------------~~ 146 (800)
...++.|.|++|+|||++|.+++.... .. ...++|++...+. +++.+.+. .++... ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 457999999999999999999876652 23 5667888865543 44444333 222210 00
Q ss_pred CC---CCCHHHHHHHHHHHhcC-CceEEEEcccc
Q 041843 147 WK---SKSLEEKAQDIFKTLSK-KKFALLLDDLW 176 (800)
Q Consensus 147 ~~---~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 176 (800)
.. ..+.+.....+.+.++. +.-.+|+|.+.
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 01 35677777777777654 45789999873
No 391
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.61 E-value=0.076 Score=48.97 Aligned_cols=113 Identities=19% Similarity=0.109 Sum_probs=62.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE---cCccCHHHHHHHHHHHhCCC--CCC--CCCCC-----
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV---SKDLQLEKIQETIGKKIGLY--TDS--WKSKS----- 151 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~i~~~l~~~--~~~--~~~~~----- 151 (800)
...|-|++..|.||||.|..++-+. ..+...++.+.. .....-...+..+ .+... ... ....+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra---~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA---LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence 4688888889999999999998887 334444443333 2222333333332 11100 000 01111
Q ss_pred --HHHHHHHHHHHhcC-CceEEEEcccc--------chhhhhhcCCcCCCCcEEEEEeCCc
Q 041843 152 --LEEKAQDIFKTLSK-KKFALLLDDLW--------ERVDLKKIGVPLPKNSAVVFTTRFV 201 (800)
Q Consensus 152 --~~~~~~~l~~~l~~-~~~LlvlDdv~--------~~~~~~~~~~~~~~~s~iivTtR~~ 201 (800)
..+..+..++.+.. .-=++|||.+- +.+++-++...-+++..||+|-|+.
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 11222333444444 44699999984 2234444545556688999999965
No 392
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.60 E-value=0.096 Score=60.09 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS---WKSKSLEEKAQDI 159 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 159 (800)
..+++-|+|++|+||||||.+++... ......++|++....++.. .+++++...+. ......+.....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45899999999999999998876665 2344668999988777643 55666553221 1233445555555
Q ss_pred HHHhc-CCceEEEEcccc
Q 041843 160 FKTLS-KKKFALLLDDLW 176 (800)
Q Consensus 160 ~~~l~-~~~~LlvlDdv~ 176 (800)
...++ ++.-|||+|-+.
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 466789999984
No 393
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.34 Score=48.94 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=32.5
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 69 SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 69 ~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..-+++...+..+.-.....++|+.|+||+++|.+++...
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 3456777777776456778899999999999999998886
No 394
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.58 E-value=0.011 Score=58.04 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..|.|.|++|+||||+|+.+++.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999998886
No 395
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.58 E-value=0.083 Score=53.62 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 82 PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 82 ~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+.+|+|.|+.|+||||+|+.+....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999998886665
No 396
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.064 Score=61.95 Aligned_cols=101 Identities=17% Similarity=0.317 Sum_probs=68.0
Q ss_pred cccchhHHHHHHHHHhccC------C-CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHH
Q 041843 63 TVVGLQSQLEQVWRCLVQE------P-AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET 135 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~~------~-~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 135 (800)
.++|.++.+..|.+++... + ......+.|+.|+|||-||++++... .+..+..+-++++....
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~~e------- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEFQE------- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhhhh-------
Confidence 3677788888888877541 1 35678899999999999999999998 77888888887765322
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCce-EEEEccccc
Q 041843 136 IGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKF-ALLLDDLWE 177 (800)
Q Consensus 136 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~ 177 (800)
+.+.++. .+.+.. .+....+-+.++.++| +|.||||+.
T Consensus 633 vskligs-p~gyvG---~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 633 VSKLIGS-PPGYVG---KEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred hhhccCC-Cccccc---chhHHHHHHHHhcCCceEEEEechhh
Confidence 2222222 111111 2233467777888885 556799964
No 397
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.57 E-value=0.017 Score=58.19 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.|.|+|.+|+||||+|+++....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999987
No 398
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.54 E-value=0.05 Score=56.39 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEc
Q 041843 87 IGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS 124 (800)
Q Consensus 87 v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 124 (800)
++++|+.|+||||+++.+.+.... .....+.+++..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~--~~g~~v~~~~~D 37 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRR--ERGWAVAVITYD 37 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh--ccCCeEEEEccc
Confidence 689999999999999999988721 122345555543
No 399
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.082 Score=55.03 Aligned_cols=89 Identities=19% Similarity=0.132 Sum_probs=53.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccC-HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ-LEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFK 161 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 161 (800)
..++++|+|+.|+||||++..++... ......+.++++..... ..+-.+..++.++.+.. ...+..+....+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l---~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL---LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 46899999999999999999998776 22334677777654322 23334445555544321 22345554444433
Q ss_pred Hh-cCCceEEEEcccc
Q 041843 162 TL-SKKKFALLLDDLW 176 (800)
Q Consensus 162 ~l-~~~~~LlvlDdv~ 176 (800)
.- .+..=+|++|-.-
T Consensus 280 l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 280 MTYVNCVDHILIDTVG 295 (407)
T ss_pred HHhcCCCCEEEEECCC
Confidence 22 1344678888873
No 400
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.50 E-value=0.13 Score=51.25 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+..|+|++|+|||+||..++...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999999998765
No 401
>PRK06217 hypothetical protein; Validated
Probab=95.50 E-value=0.025 Score=53.78 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..|+|.|.+|+||||+|++++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999886
No 402
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.49 E-value=0.081 Score=58.71 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=58.2
Q ss_pred HHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCC----
Q 041843 72 EQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS---- 146 (800)
Q Consensus 72 ~~l~~~l~~~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---- 146 (800)
..+-+.|..+ ....++.|.|++|+|||||+.+++.... .....++++....+ ..++.... +.++...+.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhC
Confidence 3444444442 3457999999999999999999988872 34456777666543 44444443 333332110
Q ss_pred ---------CCCCCHHHHHHHHHHHhcC-CceEEEEcccc
Q 041843 147 ---------WKSKSLEEKAQDIFKTLSK-KKFALLLDDLW 176 (800)
Q Consensus 147 ---------~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 176 (800)
......++.+..+.+.+.. +.-.+|+|.+.
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 1122335556666666543 44567777763
No 403
>PTZ00494 tuzin-like protein; Provisional
Probab=95.48 E-value=0.29 Score=51.29 Aligned_cols=163 Identities=14% Similarity=0.066 Sum_probs=94.9
Q ss_pred CCCCcccchhHHHHHHHHHhcc--CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHH
Q 041843 59 PTEPTVVGLQSQLEQVWRCLVQ--EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 136 (800)
Q Consensus 59 ~~~~~~vgr~~~~~~l~~~l~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 136 (800)
...+.+|.|+.+-..+.+.|.+ ...+++++++|.-|.|||+|.+...... --..++|++... ++-++.+
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE------~~paV~VDVRg~---EDtLrsV 438 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE------GVALVHVDVGGT---EDTLRSV 438 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc------CCCeEEEEecCC---cchHHHH
Confidence 3456789999998888888865 2357999999999999999999886654 234677887754 3345667
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHH---HHhcCCceEEEEccccchhhhhhcCC---cCC-C--CcEEEEEeCCcccc---
Q 041843 137 GKKIGLYTDSWKSKSLEEKAQDIF---KTLSKKKFALLLDDLWERVDLKKIGV---PLP-K--NSAVVFTTRFVDVC--- 204 (800)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~l~---~~l~~~~~LlvlDdv~~~~~~~~~~~---~~~-~--~s~iivTtR~~~~~--- 204 (800)
.+.++...-+.-.+-++-..+... ....++.-+||+-=-. ...+..+.. .+. + -+.|++----+.+.
T Consensus 439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLRE-GssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLRE-GSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEecc-CCcHHHHHHHHHHHHccchhheeeeechHhhhchhh
Confidence 777776532211222222222222 2345666566653211 111111100 000 1 34555533322221
Q ss_pred cccCccceEEeccCChHHHHHHHHHHh
Q 041843 205 GGMEARRKFKVACLSDEDAWELFREKV 231 (800)
Q Consensus 205 ~~~~~~~~~~l~~L~~~e~~~l~~~~~ 231 (800)
..+..-..|.++.|+.++|.++..+..
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 112234578999999999999887664
No 404
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.055 Score=53.54 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+..++|||++|.|||-+|++++...
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc
Confidence 46789999999999999999999987
No 405
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.45 E-value=0.062 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+|+|.|+.|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 406
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.45 E-value=0.013 Score=56.18 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.++|+|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998765
No 407
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.45 E-value=0.11 Score=53.65 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 123 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 123 (800)
...+++++|+.|+||||++..++.... .....+..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEEEec
Confidence 468999999999999999999998872 22234554544
No 408
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.44 E-value=0.059 Score=53.63 Aligned_cols=102 Identities=15% Similarity=0.137 Sum_probs=60.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcc-cCCCCCCEEEEEEEcCc-cCHHHHHHHHHHHhCCCCC----CCCCCCHHHH-
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFV-DNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTD----SWKSKSLEEK- 155 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~-~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~- 155 (800)
.-+.++|.|.+|+|||+|+..+++... ..+++-+.++++-+.+. ....++.+++...-..... ....+..-.+
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 457899999999999999999987751 01233567788877654 4567777776654222110 0011111111
Q ss_pred -----HHHHHHHh---cCCceEEEEccccch-hhhhhc
Q 041843 156 -----AQDIFKTL---SKKKFALLLDDLWER-VDLKKI 184 (800)
Q Consensus 156 -----~~~l~~~l---~~~~~LlvlDdv~~~-~~~~~~ 184 (800)
.-.+.+++ .++++|+++||+... ...+++
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEi 185 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREI 185 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHH
Confidence 12233443 378999999998543 334444
No 409
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.42 E-value=0.1 Score=56.45 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=48.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccC-HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ-LEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT 162 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 162 (800)
.+++.++|++|+||||++..++.... .......+..++...... ..+-+....+.++.+.. ...+..+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~-~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA-LLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 46899999999999999999887762 012335566676543211 11222233333443221 22233344444433
Q ss_pred hcCCceEEEEccc
Q 041843 163 LSKKKFALLLDDL 175 (800)
Q Consensus 163 l~~~~~LlvlDdv 175 (800)
+. ..=+||+|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 33 3567888976
No 410
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.42 E-value=0.021 Score=54.27 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=30.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 123 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 123 (800)
.++++|+|+.|+|||||++++.... ...|..+++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 4789999999999999999999987 677866665553
No 411
>PRK03839 putative kinase; Provisional
Probab=95.41 E-value=0.012 Score=55.73 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 412
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.38 E-value=0.12 Score=52.88 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=37.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKK 139 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 139 (800)
...++.|.|++|+||||++.+++.... ......++|++...+ ..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 346899999999999999999988762 223567888887653 34444444443
No 413
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.37 E-value=0.031 Score=59.53 Aligned_cols=90 Identities=22% Similarity=0.249 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC-ccCHHHHHHHHHHHhCCCCC----CCCCCCHHHH--
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEKIQETIGKKIGLYTD----SWKSKSLEEK-- 155 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~-- 155 (800)
....++|.|+.|+|||||++.++... ..+.++.+-+.+ .....++..+++..-+.... .........+
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 45789999999999999999998654 224555555544 33455566665443221110 0011112111
Q ss_pred ----HHHHHHHh--cCCceEEEEccccc
Q 041843 156 ----AQDIFKTL--SKKKFALLLDDLWE 177 (800)
Q Consensus 156 ----~~~l~~~l--~~~~~LlvlDdv~~ 177 (800)
.-.+.+++ +++.+|+++||+..
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 11233333 58999999999843
No 414
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.34 E-value=0.012 Score=68.59 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNK 107 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~ 107 (800)
+.++++|+|+.|.||||+.+.+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3479999999999999999998765
No 415
>PRK04040 adenylate kinase; Provisional
Probab=95.33 E-value=0.015 Score=55.28 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+|+|+|++|+||||+++.+++..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999887
No 416
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.022 Score=51.47 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|.++|.+|+||||+|.+++...
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999998
No 417
>PRK15453 phosphoribulokinase; Provisional
Probab=95.31 E-value=0.092 Score=52.33 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|.|.+|+||||+|+++++..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998776
No 418
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.31 E-value=0.051 Score=61.66 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=51.0
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
..++|.++.++.+...+... +.+.++|++|+||||+|+.+++.. . ...|..++++.- ...+...+++.+...++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~---~~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~n-~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK---RNVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYPN-PEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC---CCEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEeC-CCCCchHHHHHHHHhhc
Confidence 56899999988888777765 366799999999999999999887 2 223333333332 22344555666666654
No 419
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.31 E-value=0.063 Score=50.73 Aligned_cols=119 Identities=19% Similarity=0.156 Sum_probs=65.7
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC--EEEEEEEcCccC---HHHHHHHHHHHhCCCCCCCC
Q 041843 74 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD--YVIWVVVSKDLQ---LEKIQETIGKKIGLYTDSWK 148 (800)
Q Consensus 74 l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~ 148 (800)
++..+-+. +..-..|.|++|+||||+.+.++.-.......|- .+.-++-+.... .---+..+...+....
T Consensus 128 li~~ly~~-g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld---- 202 (308)
T COG3854 128 LIKDLYQN-GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLD---- 202 (308)
T ss_pred HHHHHHhc-CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcc----
Confidence 44444444 3445789999999999999999888744333443 223333221100 0000122222222111
Q ss_pred CCCHHHHHHHHHHHhc-CCceEEEEccccchhhhhhcCCcCCCCcEEEEEeCC
Q 041843 149 SKSLEEKAQDIFKTLS-KKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRF 200 (800)
Q Consensus 149 ~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~~~~~~~~~~~~~s~iivTtR~ 200 (800)
..-...-+....+ -.+=.+|.|.+-...+..++...+..|.+++.|.--
T Consensus 203 ---~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~~~GVkli~TaHG 252 (308)
T COG3854 203 ---PCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTALHAGVKLITTAHG 252 (308)
T ss_pred ---cchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHhcCcEEEEeecc
Confidence 1111122222222 256799999998888877776667778888877753
No 420
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.30 E-value=0.044 Score=55.19 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=32.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 126 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 126 (800)
...++.|.|++|+|||++|.+++.... .....+++++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecCC
Confidence 457999999999999999999877652 23557888887643
No 421
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.29 E-value=0.022 Score=53.80 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|+|++|+||||+|++++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 422
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.28 E-value=0.066 Score=58.45 Aligned_cols=52 Identities=25% Similarity=0.304 Sum_probs=35.4
Q ss_pred HHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc
Q 041843 72 EQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 126 (800)
Q Consensus 72 ~~l~~~l~~~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 126 (800)
..+-+.|..+ ....++.|.|.+|+|||||+.+++.... .....++|++....
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EEs 133 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEES 133 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcCC
Confidence 3344444332 2347999999999999999999988762 22245788776543
No 423
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.27 E-value=0.089 Score=49.29 Aligned_cols=115 Identities=20% Similarity=0.133 Sum_probs=64.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc---cCHHHHHHHHHHHhCC---CCC-CCCCCCHH--
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD---LQLEKIQETIGKKIGL---YTD-SWKSKSLE-- 153 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~---~~~-~~~~~~~~-- 153 (800)
....|.|+|..|-||||.|..++-+. -++...+..+..-.. .+-...+..+. .+.. ... .+...+.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra---~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA---VGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHH
Confidence 34799999999999999999998887 344445555554332 23333333220 0100 000 00111111
Q ss_pred -----HHHHHHHHHhcC-CceEEEEccccc--------hhhhhhcCCcCCCCcEEEEEeCCc
Q 041843 154 -----EKAQDIFKTLSK-KKFALLLDDLWE--------RVDLKKIGVPLPKNSAVVFTTRFV 201 (800)
Q Consensus 154 -----~~~~~l~~~l~~-~~~LlvlDdv~~--------~~~~~~~~~~~~~~s~iivTtR~~ 201 (800)
+.....++.+.+ +-=+||||.+-. .+++-++...-+.+..||+|-|+.
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122333444433 446999999832 244444445556688999999964
No 424
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.27 E-value=0.075 Score=56.78 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 123 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 123 (800)
.+.+|.++|+.|+||||+|..++.... .....+..|++
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~---~~G~kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ---RKGFKPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCCEEEEcC
Confidence 468999999999999999999988762 22234555554
No 425
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.25 E-value=0.12 Score=58.46 Aligned_cols=116 Identities=18% Similarity=0.255 Sum_probs=60.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCC-CCCCCCCHHHHHHHHHHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYT-DSWKSKSLEEKAQDIFKT 162 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~l~~~ 162 (800)
.++..|+|.+|.||||+++.+.....+....-...+.+......-...+.+.+...+.... ..............+.+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrl 246 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRL 246 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHH
Confidence 3699999999999999999887765221111124555555554444555555543332110 000000000012222332
Q ss_pred hc------------CCc---eEEEEcccc--chhhhhhcCCcCCCCcEEEEEeC
Q 041843 163 LS------------KKK---FALLLDDLW--ERVDLKKIGVPLPKNSAVVFTTR 199 (800)
Q Consensus 163 l~------------~~~---~LlvlDdv~--~~~~~~~~~~~~~~~s~iivTtR 199 (800)
|. +.+ =++|+|++. +......+...+++++++|+--=
T Consensus 247 Lg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIlvGD 300 (615)
T PRK10875 247 LGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALPPHARVIFLGD 300 (615)
T ss_pred hCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcccCCEEEEecc
Confidence 21 111 389999974 33344445556677888776543
No 426
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.24 E-value=0.04 Score=57.94 Aligned_cols=63 Identities=25% Similarity=0.284 Sum_probs=48.4
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQ 133 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 133 (800)
..++|+++.+..+...+..+ +.+.+.|++|+|||+||+.++... . ....++.+.......++.
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~---~~vll~G~PG~gKT~la~~lA~~l---~---~~~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG---GHVLLEGPPGVGKTLLARALARAL---G---LPFVRIQCTPDLLPSDLL 86 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC---CCEEEECCCCccHHHHHHHHHHHh---C---CCeEEEecCCCCCHHHhc
Confidence 34899999998888888766 688999999999999999999987 2 234455666555555543
No 427
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.23 E-value=0.048 Score=58.35 Aligned_cols=90 Identities=21% Similarity=0.196 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCC----CCCCCCCCHHHH---
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLY----TDSWKSKSLEEK--- 155 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----~~~~~~~~~~~~--- 155 (800)
....++|+|+.|+|||||++.++... .....++++.-.+..++.++........... ... .......+
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~q-sd~~~~~r~~~ 238 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVAT-SDESPMMRRLA 238 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEc-CCCCHHHHHHH
Confidence 34789999999999999999887654 2223455554434455555444333322100 000 11111111
Q ss_pred ---HHHHHHHh--cCCceEEEEccccc
Q 041843 156 ---AQDIFKTL--SKKKFALLLDDLWE 177 (800)
Q Consensus 156 ---~~~l~~~l--~~~~~LlvlDdv~~ 177 (800)
.-.+.+++ +++.+|+++||+..
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchHH
Confidence 11222333 58999999999843
No 428
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.23 E-value=0.017 Score=54.46 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...|.|+|++|+||||+|+++++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999986
No 429
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.19 Score=53.29 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCCEEEEEEEcCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNP-TDFDYVIWVVVSKDL-QLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIF 160 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 160 (800)
..++|.++|+.|+||||.+..++....... .+...+..+++.... ....-++..++.++.+. .......+....+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--KAIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--EeeCcHHHHHHHHH
Confidence 357999999999999999999988762111 233456666655321 12222445555555432 12233444433343
Q ss_pred HHhcCCceEEEEcccc
Q 041843 161 KTLSKKKFALLLDDLW 176 (800)
Q Consensus 161 ~~l~~~~~LlvlDdv~ 176 (800)
+ + ...-++++|.+.
T Consensus 251 ~-~-~~~DlVLIDTaG 264 (388)
T PRK12723 251 Q-S-KDFDLVLVDTIG 264 (388)
T ss_pred H-h-CCCCEEEEcCCC
Confidence 3 3 345688899873
No 430
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.045 Score=50.51 Aligned_cols=111 Identities=22% Similarity=0.245 Sum_probs=59.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCcc--CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL--QLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFK 161 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 161 (800)
..+++|.|+.|.|||||++.++... ......+++...... ..... ...+.... .-..-+...-.+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~---qlS~G~~~r~~l~~ 93 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP---QLSGGQRQRVALAR 93 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHHH----HhceEEEe---eCCHHHHHHHHHHH
Confidence 4799999999999999999998876 223444554432111 11111 11121110 01111223334555
Q ss_pred HhcCCceEEEEccccchh------hhhhcCCcC-CCCcEEEEEeCCccccc
Q 041843 162 TLSKKKFALLLDDLWERV------DLKKIGVPL-PKNSAVVFTTRFVDVCG 205 (800)
Q Consensus 162 ~l~~~~~LlvlDdv~~~~------~~~~~~~~~-~~~s~iivTtR~~~~~~ 205 (800)
.+...+-++++|+....- .+..+...+ ..+..++++|-+.....
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 566678899999985321 122221112 12467888887655544
No 431
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.21 E-value=0.043 Score=59.16 Aligned_cols=92 Identities=18% Similarity=0.281 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC-ccCHHHHHHHHHHHhCCCCC----CCCCCCHHHH--
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEKIQETIGKKIGLYTD----SWKSKSLEEK-- 155 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~-- 155 (800)
.-+.++|.|.+|+|||||+.+++.... +.+-+.++++-+.. .....++..++...-..... .......-.+
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 557899999999999999999988873 22456777766643 44566666666543221110 0011222222
Q ss_pred ----HHHHHHHh---cCCceEEEEcccc
Q 041843 156 ----AQDIFKTL---SKKKFALLLDDLW 176 (800)
Q Consensus 156 ----~~~l~~~l---~~~~~LlvlDdv~ 176 (800)
.-.+.+++ +++.+|+++|++.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 22334444 3799999999984
No 432
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.21 E-value=0.069 Score=61.33 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
....|+|+|..|+|||||++.+..-.
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34799999999999999999997766
No 433
>COG4240 Predicted kinase [General function prediction only]
Probab=95.20 E-value=0.1 Score=49.14 Aligned_cols=86 Identities=10% Similarity=0.048 Sum_probs=50.8
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCC---CCCCCCCCHHHHH
Q 041843 80 QEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLY---TDSWKSKSLEEKA 156 (800)
Q Consensus 80 ~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~ 156 (800)
..+++-+++|.|+-|.||||++..++.... .++ ...+.-.+..+-+-..+-+-.++++.... ..-....+..-..
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~-~kg-~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgl 123 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLA-AKG-LERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGL 123 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHH-Hhc-ccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHH
Confidence 334678999999999999999999999883 222 14666666554444444445555553110 0001223444455
Q ss_pred HHHHHHhcCCc
Q 041843 157 QDIFKTLSKKK 167 (800)
Q Consensus 157 ~~l~~~l~~~~ 167 (800)
..+....+++.
T Consensus 124 nVLnai~~g~~ 134 (300)
T COG4240 124 NVLNAIARGGP 134 (300)
T ss_pred HHHHHHhcCCC
Confidence 55555556654
No 434
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.19 E-value=0.039 Score=52.05 Aligned_cols=23 Identities=35% Similarity=0.751 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+|+|.|..|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 435
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.17 E-value=0.029 Score=53.40 Aligned_cols=94 Identities=17% Similarity=0.149 Sum_probs=48.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
...++|.|+.|+||||+++.+.... .... .++-+ ........-.... .++................+.+...+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i---~~~~-~~i~i--ed~~E~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l 97 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI---PPDE-RIITI--EDTAELQLPHPNW-VRLVTRPGNVEGSGEVTMADLLRSAL 97 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc---CCCC-CEEEE--CCccccCCCCCCE-EEEEEecCCCCCCCccCHHHHHHHHh
Confidence 3789999999999999999998876 2221 22222 1111000000000 00000000000111122344555666
Q ss_pred cCCceEEEEccccchhhhhhc
Q 041843 164 SKKKFALLLDDLWERVDLKKI 184 (800)
Q Consensus 164 ~~~~~LlvlDdv~~~~~~~~~ 184 (800)
+..+=.++++.+.+.+.+..+
T Consensus 98 R~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 98 RMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred ccCCCEEEEEccCcHHHHHHH
Confidence 777888999999877665544
No 436
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.15 E-value=0.014 Score=55.50 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+|.|.|++|+||||+|+.+++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998876
No 437
>PRK00625 shikimate kinase; Provisional
Probab=95.15 E-value=0.016 Score=54.02 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.|.|+|++|+||||+++.+++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998886
No 438
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.14 E-value=0.14 Score=54.76 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEc-CccCHHHHHHHHHHHhCCCCC----CCCCCCHHHH--
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS-KDLQLEKIQETIGKKIGLYTD----SWKSKSLEEK-- 155 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~-- 155 (800)
....++|.|..|+|||||++.++... ..+.++++-+. +.....++..+.+..-+.... .........+
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 55789999999999999999998765 12344445554 334455555444433221100 0011112111
Q ss_pred ----HHHHHHHh--cCCceEEEEccccc
Q 041843 156 ----AQDIFKTL--SKKKFALLLDDLWE 177 (800)
Q Consensus 156 ----~~~l~~~l--~~~~~LlvlDdv~~ 177 (800)
.-.+.+++ +++.+|+++||+..
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 12233333 58999999999843
No 439
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.14 E-value=0.077 Score=56.17 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++.++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 440
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.13 E-value=0.068 Score=60.55 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
....++|+|+.|+|||||++.+....
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45899999999999999999998776
No 441
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.12 E-value=0.028 Score=59.08 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT 162 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 162 (800)
.++=+.|||..|.|||-|.-.+|+.. ..+.+-. ...-.+..++-+.+.... .....+..+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~l-p~~~k~R----------~HFh~Fm~~vh~~l~~~~------~~~~~l~~va~~ 123 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSL-PIKRKRR----------VHFHEFMLDVHSRLHQLR------GQDDPLPQVADE 123 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhC-Ccccccc----------ccccHHHHHHHHHHHHHh------CCCccHHHHHHH
Confidence 56889999999999999999999997 3321100 011223333333332111 011123445566
Q ss_pred hcCCceEEEEcccc--chhh---hhhcCCcCCCCcEEEEEeCCcc
Q 041843 163 LSKKKFALLLDDLW--ERVD---LKKIGVPLPKNSAVVFTTRFVD 202 (800)
Q Consensus 163 l~~~~~LlvlDdv~--~~~~---~~~~~~~~~~~s~iivTtR~~~ 202 (800)
+.++..||.||++. +..+ +..+...+-..+.|+|+|.+..
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRP 168 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCC
Confidence 66777899999973 3322 3333333333444555554433
No 442
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.09 E-value=0.19 Score=51.80 Aligned_cols=90 Identities=23% Similarity=0.275 Sum_probs=50.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEc-CccCHHHHHHHHHHHhCCCC----CCCCCCCHHHH--
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS-KDLQLEKIQETIGKKIGLYT----DSWKSKSLEEK-- 155 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~-- 155 (800)
....++|.|..|+|||||++.++... .. +..+..-+. +.....++.......-.... ...........
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~---~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT---TA--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---CC--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 44789999999999999999998765 21 223333332 44456666665554432211 00011111111
Q ss_pred ----HHHHHHHh--cCCceEEEEccccc
Q 041843 156 ----AQDIFKTL--SKKKFALLLDDLWE 177 (800)
Q Consensus 156 ----~~~l~~~l--~~~~~LlvlDdv~~ 177 (800)
.-.+.+++ +++.+|+++||+..
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 11222222 58999999999843
No 443
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.08 E-value=0.019 Score=51.65 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=32.5
Q ss_pred cchhHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 65 VGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 65 vgr~~~~~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
||+...++++.+.+.. ......|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 5777777777777654 1234678999999999999999998876
No 444
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.08 E-value=0.02 Score=53.97 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
++|.+.|++|+||||+|+++....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 689999999999999999998875
No 445
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.07 E-value=0.034 Score=54.48 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.|.|.|++|+||||+|+.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 446
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.07 E-value=0.23 Score=51.05 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=41.7
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC-ccCHHHHHHHHH
Q 041843 73 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEKIQETIG 137 (800)
Q Consensus 73 ~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~ 137 (800)
++++.+..=..-+.++|.|..|+|||+|++++++.. +-+.++++-+.+ .....+++.++-
T Consensus 146 rvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 146 RVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhhccccccCCCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 344444442345799999999999999999998865 235677777754 345666666654
No 447
>PRK05922 type III secretion system ATPase; Validated
Probab=95.06 E-value=0.057 Score=57.67 Aligned_cols=90 Identities=16% Similarity=0.236 Sum_probs=49.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEc-CccCHHHHHHHHHHHhCCCCCC----CCCCCHHHH--
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS-KDLQLEKIQETIGKKIGLYTDS----WKSKSLEEK-- 155 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~-- 155 (800)
....++|.|+.|+|||||++.++... . . +....+-+. ......+.+.+..........- ........+
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~---~-~-d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS---K-S-TINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC---C-C-CceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 45689999999999999999998765 1 2 222332232 2333445554444333221100 011111111
Q ss_pred ----HHHHHHHh--cCCceEEEEccccc
Q 041843 156 ----AQDIFKTL--SKKKFALLLDDLWE 177 (800)
Q Consensus 156 ----~~~l~~~l--~~~~~LlvlDdv~~ 177 (800)
.-.+.+++ +++++|+++|++..
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 12233333 58999999999843
No 448
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.05 E-value=0.061 Score=57.83 Aligned_cols=93 Identities=18% Similarity=0.327 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC-ccCHHHHHHHHHHHhCCCCC----CCCCCCHHHH--
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEKIQETIGKKIGLYTD----SWKSKSLEEK-- 155 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~-- 155 (800)
.-+.++|.|.+|+|||||+.+++..... ++-+.++++-+.. .....++.+++...-..... .........+
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~--~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAK--EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4578999999999999999998777621 1224566666643 44566777777654222110 0011222221
Q ss_pred ----HHHHHHHh---cCCceEEEEccccc
Q 041843 156 ----AQDIFKTL---SKKKFALLLDDLWE 177 (800)
Q Consensus 156 ----~~~l~~~l---~~~~~LlvlDdv~~ 177 (800)
.-.+.+++ +++.+|+++|++..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 22344444 67999999999843
No 449
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.03 E-value=0.027 Score=56.57 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.|.++|++|+||||+|++++...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999887
No 450
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.03 E-value=0.03 Score=53.97 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|+|++|+||||+|+.+....
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998876
No 451
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.02 E-value=0.041 Score=52.34 Aligned_cols=43 Identities=30% Similarity=0.386 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
.|+|+|-||+||||+|..++.+.. ..+...+.-|+...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~--~~~~~~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL--SKGGYNVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH--hcCCceEEEEeCCCCCChH
Confidence 689999999999999999666652 2232456667776666543
No 452
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.02 E-value=0.09 Score=50.77 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNK 107 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~ 107 (800)
...+++|.|+.|+|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3479999999999999999999886
No 453
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.15 Score=48.49 Aligned_cols=59 Identities=12% Similarity=0.186 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCceEEEEccccchhhhhhcCCc-------CCCCcEEEEEeCCcccccccCccceEE
Q 041843 156 AQDIFKTLSKKKFALLLDDLWERVDLKKIGVP-------LPKNSAVVFTTRFVDVCGGMEARRKFK 214 (800)
Q Consensus 156 ~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~-------~~~~s~iivTtR~~~~~~~~~~~~~~~ 214 (800)
...+.+.+-=++-+.|||..++--|++.+..- ...++-+++.|-.+.++....++.++-
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 34455555667889999999876655544211 122666666666677777766555543
No 454
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.00 E-value=0.19 Score=52.46 Aligned_cols=59 Identities=24% Similarity=0.280 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHhCCC
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKIGLY 143 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~ 143 (800)
.++|.++||.|+||||-...++.++. ....-..+..++..... ...+-++..++-++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCc
Confidence 68999999999999966555555552 12334456666654322 2333344445545543
No 455
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.00 E-value=0.02 Score=51.80 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 041843 86 IIGLYGMGGVGKTTLLTQIN 105 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~ 105 (800)
.|.|+|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999997
No 456
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.99 E-value=0.18 Score=49.24 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|.|+.|.|||||++.++...
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34789999999999999999998775
No 457
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.97 E-value=0.11 Score=51.65 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCCEE-EEEEEcC-ccCHHHHHHHHHHHhCCCCC----CCCCCCHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLL-TQINNKFVDNPTDFDYV-IWVVVSK-DLQLEKIQETIGKKIGLYTD----SWKSKSLEEK 155 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~~f~~~-~wv~~~~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~ 155 (800)
.-+.++|.|.+|+|||+|| ..+.+.. +-+.+ +++-+.+ .....++.+++...-..... ....+....+
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4578999999999999996 5555443 22333 5555544 34566777776654221100 0011111111
Q ss_pred ------HHHHHHHh--cCCceEEEEccccch-hhhhhc
Q 041843 156 ------AQDIFKTL--SKKKFALLLDDLWER-VDLKKI 184 (800)
Q Consensus 156 ------~~~l~~~l--~~~~~LlvlDdv~~~-~~~~~~ 184 (800)
.-.+.+++ +++.+|+++||+... ..++++
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 11222222 589999999998543 334444
No 458
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.96 E-value=0.021 Score=54.08 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+++|+|+.|+||||+++.++...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 459
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.96 E-value=0.021 Score=51.12 Aligned_cols=23 Identities=48% Similarity=0.761 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998875
No 460
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.96 E-value=0.12 Score=51.19 Aligned_cols=106 Identities=9% Similarity=0.126 Sum_probs=68.5
Q ss_pred CCcccchhHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKK 139 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 139 (800)
.+.|+|-... .++..++.. ....+.+.++|..|+|||+-++.+++.. ...+-+..+..+....++..+...
T Consensus 71 ~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i~~~ 142 (297)
T COG2842 71 APDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILIICAA 142 (297)
T ss_pred cccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHHHHH
Confidence 4567775443 222233322 1123599999999999999999998776 223444566666666666666655
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch
Q 041843 140 IGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER 178 (800)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~ 178 (800)
.... ...........+...+.+..-+++.|+.+..
T Consensus 143 ~~~~----~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L 177 (297)
T COG2842 143 AFGA----TDGTINDLTERLMIRLRDTVRLIIVDEADRL 177 (297)
T ss_pred Hhcc----cchhHHHHHHHHHHHHccCcceeeeehhhcc
Confidence 5432 3345556666777777888899999998643
No 461
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.96 E-value=0.14 Score=54.87 Aligned_cols=91 Identities=23% Similarity=0.246 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCC----CCCCCCHHHH---
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTD----SWKSKSLEEK--- 155 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~--- 155 (800)
....++|.|..|+|||||++.++... . ....++...-.+...+.++..+.+..-+.... .........+
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~---~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT---D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 44789999999999999999888765 2 22334433334444566665554433221110 0011111111
Q ss_pred ---HHHHHHHh--cCCceEEEEccccc
Q 041843 156 ---AQDIFKTL--SKKKFALLLDDLWE 177 (800)
Q Consensus 156 ---~~~l~~~l--~~~~~LlvlDdv~~ 177 (800)
.-.+.+++ +++.+|+++||+..
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 12233333 57899999999843
No 462
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=94.96 E-value=0.55 Score=48.72 Aligned_cols=59 Identities=7% Similarity=-0.072 Sum_probs=37.8
Q ss_pred ccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHH
Q 041843 209 ARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAM 267 (800)
Q Consensus 209 ~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 267 (800)
...++++..++.+|+.++..-+....-......-++..+++.-..+|+|--+..++..+
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 44578999999999999876655322211011115567778888899996666555543
No 463
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.94 E-value=0.018 Score=55.67 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+|+|.|+.|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 464
>COG3910 Predicted ATPase [General function prediction only]
Probab=94.93 E-value=0.44 Score=43.84 Aligned_cols=26 Identities=38% Similarity=0.454 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++..|+|..|+|||||..+++-..
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhhc
Confidence 45899999999999999999887654
No 465
>PHA02244 ATPase-like protein
Probab=94.93 E-value=0.053 Score=56.17 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=31.7
Q ss_pred CCcccchhHHHH----HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 61 EPTVVGLQSQLE----QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 61 ~~~~vgr~~~~~----~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+..++|....+. .+..++..+ .-|.|+|++|+|||++|+++++..
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~---~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN---IPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC---CCEEEECCCCCCHHHHHHHHHHHh
Confidence 345677555443 444444433 457889999999999999999886
No 466
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.47 Score=48.52 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=39.3
Q ss_pred CcccchhHHHHHHHHHhcc---------C----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCE
Q 041843 62 PTVVGLQSQLEQVWRCLVQ---------E----PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDY 117 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~---------~----~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~ 117 (800)
.++-|-+...+++.+...- . ...+-|.++||+|.|||-+|++++.+. ...|-.
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fIn 157 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---GANFIN 157 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc---CCCcce
Confidence 4556777777777766421 0 245789999999999999999999987 555543
No 467
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.92 E-value=0.019 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998774
No 468
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.92 E-value=0.019 Score=54.18 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998886
No 469
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.90 E-value=0.039 Score=56.69 Aligned_cols=49 Identities=27% Similarity=0.324 Sum_probs=36.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET 135 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 135 (800)
.+++.+.|-||+||||+|.+.+-..+ .....++-|......++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999877763 22244777777776677666554
No 470
>PLN02348 phosphoribulokinase
Probab=94.88 E-value=0.061 Score=56.26 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=30.4
Q ss_pred HHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 71 LEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 71 ~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+.......+...+|+|.|.+|+||||+|+.+.+..
T Consensus 36 ~~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 36 ASSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred hHHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455554544567899999999999999999999887
No 471
>PF13245 AAA_19: Part of AAA domain
Probab=94.87 E-value=0.045 Score=43.02 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+++.|.|++|.|||+++.+.....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3688899999999995555544444
No 472
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.85 E-value=0.27 Score=47.73 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|.|+.|+|||||++.++...
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34799999999999999999998764
No 473
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.80 E-value=0.15 Score=54.47 Aligned_cols=88 Identities=23% Similarity=0.301 Sum_probs=46.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc-cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFK 161 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 161 (800)
...+++++|+.|+||||++..++.... .......+..+..... ....+-+...++.++.... ...+..+.... ..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~-~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~v~~~~dl~~a-l~ 265 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAV-IRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--SIKDIADLQLM-LH 265 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--cCCCHHHHHHH-HH
Confidence 357999999999999999998887641 1122233444443321 1223334445555554321 22233333222 23
Q ss_pred HhcCCceEEEEccc
Q 041843 162 TLSKKKFALLLDDL 175 (800)
Q Consensus 162 ~l~~~~~LlvlDdv 175 (800)
.+.++ -++++|-.
T Consensus 266 ~l~~~-d~VLIDTa 278 (420)
T PRK14721 266 ELRGK-HMVLIDTV 278 (420)
T ss_pred HhcCC-CEEEecCC
Confidence 34443 45666765
No 474
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.79 E-value=0.05 Score=57.25 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=57.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHH--HHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQE--TIGKKIGLYTDSWKSKSLEEKAQDIFK 161 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~--~i~~~l~~~~~~~~~~~~~~~~~~l~~ 161 (800)
...|.|+|+.|+||||+++.+..........-..++.+.-.-.+....... ....|.. ...+.......++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~------v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSE------IPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeee------ccccccCHHHHHHH
Confidence 479999999999999999999877621111112333332211111111100 0011110 01111234455667
Q ss_pred HhcCCceEEEEccccchhhhhhcCCcCCCCcEEEEEe
Q 041843 162 TLSKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTT 198 (800)
Q Consensus 162 ~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~s~iivTt 198 (800)
.++..+-.+++..+.+.+...........|-. ++||
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al~aa~tGh~-v~tT 243 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAALEAALTGHP-VYTT 243 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHHHHHHcCCc-EEEe
Confidence 88888999999999887766543232222433 4555
No 475
>PRK14529 adenylate kinase; Provisional
Probab=94.79 E-value=0.12 Score=50.28 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=45.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCC--EEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFD--YVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
.|.|.|++|+||||+|+.++..+ .. .+.. ..+.-.+..........+.++..- .....+.....+.+++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~-~~-~~is~gdllr~~i~~~t~lg~~i~~~i~~G-------~lvpdei~~~lv~~~l 72 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKY-DL-AHIESGAIFREHIGGGTELGKKAKEYIDRG-------DLVPDDITIPMILETL 72 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CC-CCcccchhhhhhccCCChHHHHHHHHHhcc-------CcchHHHHHHHHHHHH
Confidence 37899999999999999999887 21 1221 111111222223333344444322 2223344445566666
Q ss_pred cCC-ceEEEEcccc
Q 041843 164 SKK-KFALLLDDLW 176 (800)
Q Consensus 164 ~~~-~~LlvlDdv~ 176 (800)
.+. ..-+|||.+-
T Consensus 73 ~~~~~~g~iLDGfP 86 (223)
T PRK14529 73 KQDGKNGWLLDGFP 86 (223)
T ss_pred hccCCCcEEEeCCC
Confidence 432 4568999984
No 476
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.77 E-value=0.039 Score=53.80 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 041843 87 IGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 87 v~I~G~~GiGKTtLa~~~~~~~ 108 (800)
|.|.|++|+||||+|+.++..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998876
No 477
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.75 E-value=0.05 Score=51.53 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=32.9
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+++|.+.....+.-..... .-+.++|++|+|||++|+.+..-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~---h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG---HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC-----EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcCC---CCeEEECCCCCCHHHHHHHHHHhC
Confidence 46788888777776655543 689999999999999999997654
No 478
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.73 E-value=0.039 Score=52.92 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|..|+|||||++.++--.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 34799999999999999999997765
No 479
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.73 E-value=0.047 Score=56.18 Aligned_cols=152 Identities=17% Similarity=0.247 Sum_probs=78.4
Q ss_pred ccchhHHHHHHHHHhccC----------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCC-CC---CEEEEEE-
Q 041843 64 VVGLQSQLEQVWRCLVQE----------------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-DF---DYVIWVV- 122 (800)
Q Consensus 64 ~vgr~~~~~~l~~~l~~~----------------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-~f---~~~~wv~- 122 (800)
..|-..++..|.+.+... ....++.|+|.+|+||||+.+++......... .| ...+-+.
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~ 452 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccc
Confidence 345566777777776321 23468999999999999999999776511100 00 0111111
Q ss_pred --------Ec--CccCHHHHHHHHHHH-------------hCCCCCCC------CCCCHHHHHHHHHHHhcCCceEEEEc
Q 041843 123 --------VS--KDLQLEKIQETIGKK-------------IGLYTDSW------KSKSLEEKAQDIFKTLSKKKFALLLD 173 (800)
Q Consensus 123 --------~~--~~~~~~~~~~~i~~~-------------l~~~~~~~------~~~~~~~~~~~l~~~l~~~~~LlvlD 173 (800)
-+ ..++-..++.++... .++..+-. .-.+-+.-..++...+..++-+++.|
T Consensus 453 nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 453 NTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 11 112212233333322 22211100 01111222345666777888999999
Q ss_pred cccchh---hhhhcCCc---CC--CCcEEEEEeCCcccccccCccceEEe
Q 041843 174 DLWERV---DLKKIGVP---LP--KNSAVVFTTRFVDVCGGMEARRKFKV 215 (800)
Q Consensus 174 dv~~~~---~~~~~~~~---~~--~~s~iivTtR~~~~~~~~~~~~~~~l 215 (800)
.+...- ....+... +. .|+.+++.|+.+++...+.++..+-+
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~v 582 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILV 582 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEe
Confidence 975321 11111111 11 27777777777888777766655443
No 480
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.73 E-value=0.033 Score=54.20 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINN 106 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~ 106 (800)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999874
No 481
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.70 E-value=0.1 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+|+|.|.+|+||||+|+++.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l 23 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF 23 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998877
No 482
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.70 E-value=0.039 Score=55.84 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=39.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 041843 82 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 82 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
+..+++.|+|.+|+|||++|.++.... ...+..++||+.... ..++.+...
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHH
Confidence 356899999999999999999999987 445888999887654 334444333
No 483
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.70 E-value=0.051 Score=47.02 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+|.+.|.=|+||||+++.++...
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3899999999999999999998886
No 484
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.69 E-value=0.017 Score=32.92 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=13.8
Q ss_pred CCcEEEccCccccccccccccc
Q 041843 466 CLTVLKMSDNIMLRQLPTGISK 487 (800)
Q Consensus 466 ~L~~L~Ls~~~~~~~lp~~i~~ 487 (800)
+|++|++++| .++.+|.+|++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4677777777 56677766554
No 485
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.69 E-value=0.031 Score=53.43 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|.|.|.+|+||||+|+.++.+.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998885
No 486
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.67 E-value=0.19 Score=56.49 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCC-------------CCCC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTD-------------SWKS 149 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------~~~~ 149 (800)
...++.|.|++|+|||++|.+++... ......++|++.... ..++.+.. ..++...+ ....
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~---~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 345 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAA---CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPES 345 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCccc
Confidence 45789999999999999999998776 345577888887654 44444333 23332110 0112
Q ss_pred CCHHHHHHHHHHHhcC-CceEEEEcccc
Q 041843 150 KSLEEKAQDIFKTLSK-KKFALLLDDLW 176 (800)
Q Consensus 150 ~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 176 (800)
...++....+.+.+.. +.-++|+|.+.
T Consensus 346 ~~~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 346 YGLEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 2344555556665543 45678999873
No 487
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.67 E-value=0.042 Score=57.07 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=37.4
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.++|.++.++.+.-.+... +..-+.+.|+.|+||||+|+.++.-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~-~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDP-GIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhcc-CCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 56899999998887655433 34579999999999999999998775
No 488
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.66 E-value=0.024 Score=51.66 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+|.|.|+.|+||||+|+.++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 489
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.66 E-value=0.053 Score=52.71 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=27.2
Q ss_pred HhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 77 CLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 77 ~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++++++|+++|+.|+|||||..++.+..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444579999999999999999999998875
No 490
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.66 E-value=0.02 Score=30.16 Aligned_cols=16 Identities=44% Similarity=0.708 Sum_probs=6.7
Q ss_pred cccEEeccCCCCcccc
Q 041843 490 SLQLLDISYTSVTGLP 505 (800)
Q Consensus 490 ~L~~L~L~~~~i~~lp 505 (800)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 491
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.65 E-value=0.064 Score=57.13 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=30.3
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 70 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 70 ~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++.+.+.+... ....+.|.|+||.|||++.+++.+..
T Consensus 9 ~~~~v~~~~~~~-~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENE-EGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHcc-CCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 345555555544 56789999999999999999999987
No 492
>PRK08149 ATP synthase SpaL; Validated
Probab=94.64 E-value=0.22 Score=53.25 Aligned_cols=89 Identities=15% Similarity=0.249 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEc-CccCHHHHHHHHHHHhCCCC-----CCCCCCCHH---
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS-KDLQLEKIQETIGKKIGLYT-----DSWKSKSLE--- 153 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~--- 153 (800)
....++|.|+.|+|||||++.++... .-+.++...+. +.....++..+......... .. ......
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~-sd~p~~~r~ 223 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT-SDFSSVDRC 223 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC-CCCCHHHHH
Confidence 45789999999999999999998754 22333334443 34456666666665432210 00 111111
Q ss_pred ---HHHHHHHHHh--cCCceEEEEccccc
Q 041843 154 ---EKAQDIFKTL--SKKKFALLLDDLWE 177 (800)
Q Consensus 154 ---~~~~~l~~~l--~~~~~LlvlDdv~~ 177 (800)
.....+.+++ +++++|+++||+..
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1122233333 58999999999843
No 493
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.62 E-value=0.2 Score=53.98 Aligned_cols=91 Identities=21% Similarity=0.255 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCC----CCCCCCHHHH---
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTD----SWKSKSLEEK--- 155 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~--- 155 (800)
....++|.|..|+|||||++.++... .. -..+++..-.+.....++.+.+...-..... .......-.+
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~---~~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGT---QC-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CC-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 45799999999999999999998765 11 1245554445555666666666544222110 0011111111
Q ss_pred ---HHHHHHHh--cCCceEEEEccccc
Q 041843 156 ---AQDIFKTL--SKKKFALLLDDLWE 177 (800)
Q Consensus 156 ---~~~l~~~l--~~~~~LlvlDdv~~ 177 (800)
.-.+.+++ +++.+|+++|++..
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 12233333 58899999999843
No 494
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.62 E-value=0.032 Score=52.93 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++|+|+|++|+|||||++++....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46899999999999999999998765
No 495
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.61 E-value=0.032 Score=57.51 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHH
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQ 133 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 133 (800)
+++.+.|-||+||||+|.+.+-..++ ....+.-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~---~G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR---RGKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTS-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh---CCCCeeEeecCCCccHHHHh
Confidence 68999999999999999998888732 33445555555444444443
No 496
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.58 E-value=0.066 Score=49.56 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++++|+|+.|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 497
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.55 E-value=0.064 Score=57.28 Aligned_cols=33 Identities=36% Similarity=0.529 Sum_probs=27.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD 116 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~ 116 (800)
.+..+|+|++|+||||+.+.++.+......+++
T Consensus 101 g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d 133 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID 133 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc
Confidence 478999999999999999999988755555554
No 498
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.55 E-value=0.065 Score=51.74 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+|+|.|+.|+||||+++.+++..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999887
No 499
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.54 E-value=0.16 Score=54.62 Aligned_cols=93 Identities=23% Similarity=0.338 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc-cCHHHHHHHHHHHhCCCCC----CCCCCCHHHH--
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTD----SWKSKSLEEK-- 155 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~-- 155 (800)
.-+.++|.|.+|+|||+|+.+++.... ..+-+.++++-+... ....++.+++...-..... .......-.+
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 457899999999999999999988862 123467788877544 4566666666543221100 0011112111
Q ss_pred ----HHHHHHHh---cCCceEEEEccccc
Q 041843 156 ----AQDIFKTL---SKKKFALLLDDLWE 177 (800)
Q Consensus 156 ----~~~l~~~l---~~~~~LlvlDdv~~ 177 (800)
.-.+.+++ +++++|+++||+..
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 22344444 46899999999843
No 500
>PRK13949 shikimate kinase; Provisional
Probab=94.53 E-value=0.032 Score=52.02 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.|.|+|+.|+||||+++.+++..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999987
Done!