Query 041843
Match_columns 800
No_of_seqs 504 out of 3927
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 19:21:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1E-43 3.6E-48 399.2 23.2 313 61-392 127-470 (549)
2 1vt4_I APAF-1 related killer D 100.0 5.7E-38 2E-42 353.9 19.5 287 62-386 128-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1E-35 3.5E-40 372.1 31.2 314 58-392 120-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.7E-34 2E-38 325.7 28.2 308 58-389 120-448 (591)
5 2z81_A CD282 antigen, TOLL-lik 99.9 2.6E-25 8.8E-30 252.5 17.9 170 401-582 10-184 (549)
6 3vq2_A TLR4, TOLL-like recepto 99.9 7.3E-25 2.5E-29 251.9 20.2 149 399-551 14-167 (606)
7 4fmz_A Internalin; leucine ric 99.9 8.9E-25 3E-29 232.5 19.2 287 415-755 40-326 (347)
8 3rgz_A Protein brassinosteroid 99.9 3.9E-25 1.3E-29 260.0 14.6 149 400-550 204-356 (768)
9 3t6q_A CD180 antigen; protein- 99.9 3.5E-24 1.2E-28 246.2 22.1 325 399-748 15-409 (606)
10 2id5_A Lingo-1, leucine rich r 99.9 1.9E-23 6.6E-28 232.4 26.0 285 399-748 14-305 (477)
11 4ecn_A Leucine-rich repeat pro 99.9 5.5E-25 1.9E-29 256.3 12.5 334 407-772 436-837 (876)
12 1o6v_A Internalin A; bacterial 99.9 1.2E-23 4.2E-28 232.8 22.3 302 399-749 49-363 (466)
13 4fmz_A Internalin; leucine ric 99.9 2.6E-23 9E-28 221.1 24.0 298 398-749 46-343 (347)
14 3t6q_A CD180 antigen; protein- 99.9 7.2E-24 2.5E-28 243.6 21.0 148 399-548 36-190 (606)
15 3bz5_A Internalin-J, INLJ; leu 99.9 9.5E-24 3.3E-28 231.5 21.0 347 399-796 45-396 (457)
16 4eco_A Uncharacterized protein 99.9 9.6E-25 3.3E-29 250.5 13.4 232 437-689 202-468 (636)
17 2z63_A TOLL-like receptor 4, v 99.9 5.2E-24 1.8E-28 243.0 18.8 148 399-550 10-162 (570)
18 3rgz_A Protein brassinosteroid 99.9 2.9E-24 1E-28 252.5 16.3 354 417-792 267-722 (768)
19 2z7x_B TOLL-like receptor 1, v 99.9 3.3E-23 1.1E-27 233.3 23.9 143 398-549 2-150 (520)
20 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-23 5.9E-28 240.4 21.5 124 399-523 35-164 (606)
21 3j0a_A TOLL-like receptor 5; m 99.9 2.1E-23 7.3E-28 247.7 22.7 150 399-551 7-162 (844)
22 1ziw_A TOLL-like receptor 3; i 99.9 9.5E-24 3.3E-28 246.0 19.0 265 399-688 7-306 (680)
23 3bz5_A Internalin-J, INLJ; leu 99.9 8.9E-24 3E-28 231.7 17.5 318 413-788 36-353 (457)
24 4ecn_A Leucine-rich repeat pro 99.9 1.3E-23 4.6E-28 244.7 18.8 331 434-795 440-827 (876)
25 4eco_A Uncharacterized protein 99.9 4.3E-24 1.5E-28 245.1 13.4 332 408-772 195-597 (636)
26 1o6v_A Internalin A; bacterial 99.9 5.6E-23 1.9E-27 227.5 20.7 327 417-788 44-389 (466)
27 3v47_A TOLL-like receptor 5B a 99.9 4.9E-23 1.7E-27 227.9 19.7 345 399-772 13-405 (455)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.4E-22 8.1E-27 228.2 23.8 351 399-772 34-507 (562)
29 3o6n_A APL1; leucine-rich repe 99.9 6.4E-23 2.2E-27 221.7 18.0 301 417-772 43-349 (390)
30 3o6n_A APL1; leucine-rich repe 99.9 2.4E-22 8.3E-27 217.1 17.9 296 398-748 47-348 (390)
31 2z63_A TOLL-like receptor 4, v 99.9 1.4E-22 4.7E-27 231.2 16.6 148 399-548 31-188 (570)
32 2id5_A Lingo-1, leucine rich r 99.9 3.3E-22 1.1E-26 222.4 18.5 278 422-762 14-308 (477)
33 1ziw_A TOLL-like receptor 3; i 99.9 8.3E-22 2.8E-26 229.5 22.7 75 401-475 78-155 (680)
34 2z7x_B TOLL-like receptor 1, v 99.9 2.1E-21 7.3E-26 218.5 24.7 144 422-582 3-150 (520)
35 3v47_A TOLL-like receptor 5B a 99.9 1.7E-22 5.8E-27 223.5 15.0 343 422-789 13-410 (455)
36 2ft3_A Biglycan; proteoglycan, 99.9 4.2E-22 1.4E-26 210.1 17.1 294 419-749 33-330 (332)
37 3oja_B Anopheles plasmodium-re 99.9 3E-22 1E-26 228.5 17.0 293 401-748 56-354 (597)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.2E-21 7.5E-26 220.2 24.0 148 420-582 32-181 (562)
39 3oja_B Anopheles plasmodium-re 99.9 4.1E-22 1.4E-26 227.4 17.6 301 417-772 49-355 (597)
40 2z81_A CD282 antigen, TOLL-lik 99.9 7.1E-22 2.4E-26 224.1 18.1 150 398-549 28-184 (549)
41 3j0a_A TOLL-like receptor 5; m 99.9 4.9E-21 1.7E-25 227.5 24.7 153 422-584 7-162 (844)
42 4fcg_A Uncharacterized protein 99.9 1.5E-21 5E-26 204.7 17.2 204 441-694 81-293 (328)
43 1xku_A Decorin; proteoglycan, 99.9 4.2E-21 1.5E-25 202.3 20.4 272 419-726 31-304 (330)
44 2z80_A TOLL-like receptor 2, v 99.9 1.8E-21 6E-26 207.2 16.0 175 400-586 35-214 (353)
45 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-21 3.7E-26 204.6 9.9 221 420-689 51-279 (313)
46 1ogq_A PGIP-2, polygalacturona 99.8 2.6E-21 8.8E-26 201.7 11.4 255 441-757 50-309 (313)
47 4g8a_A TOLL-like receptor 4; l 99.8 3.5E-20 1.2E-24 214.4 21.6 148 400-551 35-187 (635)
48 3zyi_A Leucine-rich repeat-con 99.8 9.7E-21 3.3E-25 208.6 15.9 239 399-689 57-301 (452)
49 3zyj_A Leucine-rich repeat-con 99.8 9.3E-21 3.2E-25 208.0 15.5 238 400-689 47-290 (440)
50 4fcg_A Uncharacterized protein 99.8 1E-20 3.5E-25 198.3 12.6 219 419-688 81-311 (328)
51 2z80_A TOLL-like receptor 2, v 99.8 1.6E-19 5.4E-24 192.1 18.6 269 422-749 34-311 (353)
52 4g8a_A TOLL-like receptor 4; l 99.8 1.5E-19 5E-24 209.2 18.4 125 398-523 54-184 (635)
53 2z66_A Variable lymphocyte rec 99.8 6.5E-20 2.2E-24 191.0 12.8 169 401-581 12-186 (306)
54 1jl5_A Outer protein YOPM; leu 99.8 3.3E-20 1.1E-24 203.1 10.7 312 401-788 16-351 (454)
55 1xku_A Decorin; proteoglycan, 99.8 9.2E-19 3.1E-23 184.3 20.9 259 399-689 34-304 (330)
56 2z66_A Variable lymphocyte rec 99.8 1.8E-19 6.1E-24 187.7 14.7 219 422-689 10-234 (306)
57 2ft3_A Biglycan; proteoglycan, 99.8 2.2E-19 7.5E-24 189.2 15.3 282 399-725 36-330 (332)
58 1jl5_A Outer protein YOPM; leu 99.8 2E-18 7E-23 188.9 22.8 260 419-754 111-371 (454)
59 3g06_A SSPH2 (leucine-rich rep 99.8 3.7E-18 1.3E-22 192.6 24.8 231 398-689 42-272 (622)
60 3zyi_A Leucine-rich repeat-con 99.8 3.4E-19 1.2E-23 196.2 15.7 242 421-726 56-301 (452)
61 1ozn_A Reticulon 4 receptor; N 99.8 1.6E-19 5.3E-24 185.9 10.5 218 422-689 14-236 (285)
62 1ozn_A Reticulon 4 receptor; N 99.8 9.4E-19 3.2E-23 180.1 16.3 219 399-666 14-236 (285)
63 3zyj_A Leucine-rich repeat-con 99.8 9.6E-19 3.3E-23 191.9 16.9 242 421-726 45-290 (440)
64 3o53_A Protein LRIM1, AGAP0063 99.8 7E-20 2.4E-24 191.4 6.2 262 419-753 34-300 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-17 4.6E-22 188.0 20.4 255 419-749 40-294 (622)
66 2o6q_A Variable lymphocyte rec 99.7 1.2E-17 4.1E-22 170.1 16.2 196 399-634 19-218 (270)
67 1wwl_A Monocyte differentiatio 99.7 3.2E-19 1.1E-23 186.0 2.6 244 419-688 43-306 (312)
68 3oja_A Leucine-rich immune mol 99.7 1.3E-18 4.5E-23 192.4 7.5 211 420-690 35-249 (487)
69 1p9a_G Platelet glycoprotein I 99.7 1.6E-17 5.4E-22 170.6 14.7 201 415-666 6-206 (290)
70 1h6u_A Internalin H; cell adhe 99.7 7.1E-18 2.4E-22 175.1 11.3 127 416-550 38-164 (308)
71 2z62_A TOLL-like receptor 4, v 99.7 1.3E-17 4.6E-22 170.5 13.2 218 400-666 11-235 (276)
72 3o53_A Protein LRIM1, AGAP0063 99.7 4E-18 1.4E-22 178.0 8.3 267 421-760 12-283 (317)
73 2xwt_C Thyrotropin receptor; s 99.7 1.6E-17 5.5E-22 165.9 11.3 128 420-549 32-168 (239)
74 2xwt_C Thyrotropin receptor; s 99.7 1.8E-17 6.2E-22 165.5 11.7 140 430-583 22-169 (239)
75 1h6u_A Internalin H; cell adhe 99.7 4.5E-17 1.5E-21 169.0 14.9 166 398-583 43-208 (308)
76 2o6q_A Variable lymphocyte rec 99.7 5.2E-17 1.8E-21 165.3 15.1 198 420-666 17-216 (270)
77 3rfs_A Internalin B, repeat mo 99.7 1E-17 3.6E-22 170.7 9.7 156 415-583 37-194 (272)
78 2z62_A TOLL-like receptor 4, v 99.7 6.5E-17 2.2E-21 165.4 15.2 216 424-689 12-235 (276)
79 2qen_A Walker-type ATPase; unk 99.7 5.5E-16 1.9E-20 164.7 23.0 291 61-386 11-348 (350)
80 3oja_A Leucine-rich immune mol 99.7 6.2E-18 2.1E-22 187.1 7.1 237 438-747 31-270 (487)
81 3rfs_A Internalin B, repeat mo 99.7 4.8E-17 1.7E-21 165.7 12.4 174 398-583 43-218 (272)
82 1p9a_G Platelet glycoprotein I 99.7 7.6E-17 2.6E-21 165.5 13.6 193 399-634 13-208 (290)
83 1z7x_W Ribonuclease inhibitor; 99.7 2.1E-18 7.3E-23 190.9 -0.6 260 419-689 3-295 (461)
84 4ay9_X Follicle-stimulating ho 99.7 2.8E-16 9.7E-21 166.4 15.2 237 401-689 14-257 (350)
85 1w5s_A Origin recognition comp 99.7 1.1E-15 3.6E-20 166.4 19.6 304 61-382 21-387 (412)
86 3m19_A Variable lymphocyte rec 99.7 4.4E-16 1.5E-20 156.6 15.3 174 398-584 16-193 (251)
87 2fna_A Conserved hypothetical 99.7 4.8E-15 1.6E-19 157.9 23.0 287 61-385 12-355 (357)
88 4ay9_X Follicle-stimulating ho 99.7 9.2E-16 3.2E-20 162.4 16.5 238 444-748 12-255 (350)
89 3m19_A Variable lymphocyte rec 99.7 5.7E-16 2E-20 155.7 14.1 176 420-634 15-192 (251)
90 1h6t_A Internalin B; cell adhe 99.7 5.5E-16 1.9E-20 159.3 13.5 172 415-634 42-213 (291)
91 1z7x_W Ribonuclease inhibitor; 99.7 2.7E-17 9.3E-22 182.0 3.8 317 412-749 49-408 (461)
92 3ogk_B Coronatine-insensitive 99.6 7.6E-17 2.6E-21 184.5 5.9 176 417-605 162-351 (592)
93 4ezg_A Putative uncharacterize 99.6 8.8E-16 3E-20 148.0 11.9 154 416-584 41-195 (197)
94 2ast_B S-phase kinase-associat 99.6 1.5E-16 5.2E-21 167.9 6.6 131 441-581 70-206 (336)
95 3ogk_B Coronatine-insensitive 99.6 2.7E-16 9.2E-21 180.0 8.7 310 416-755 189-528 (592)
96 2ast_B S-phase kinase-associat 99.6 2.1E-16 7.1E-21 166.9 6.6 222 443-725 49-282 (336)
97 2ca6_A RAN GTPase-activating p 99.6 1.5E-16 5.2E-21 171.3 4.3 85 438-523 29-133 (386)
98 1wwl_A Monocyte differentiatio 99.6 5.4E-16 1.8E-20 161.5 8.3 203 439-665 93-306 (312)
99 4glp_A Monocyte differentiatio 99.6 7.8E-17 2.7E-21 167.7 1.7 205 440-689 90-305 (310)
100 1m9s_A Internalin B; cell inva 99.6 2.1E-15 7.3E-20 169.9 12.0 152 415-585 39-190 (605)
101 1h6t_A Internalin B; cell adhe 99.6 2.5E-14 8.4E-19 146.9 16.3 167 398-584 48-214 (291)
102 3e6j_A Variable lymphocyte rec 99.6 1.8E-14 6.1E-19 142.3 14.1 146 401-550 24-172 (229)
103 2ca6_A RAN GTPase-activating p 99.6 7.2E-16 2.4E-20 166.0 4.2 246 408-689 21-314 (386)
104 1m9s_A Internalin B; cell inva 99.6 3.3E-15 1.1E-19 168.4 9.4 146 419-583 21-166 (605)
105 1xeu_A Internalin C; cellular 99.6 1.2E-14 4.1E-19 146.8 12.3 157 407-584 30-186 (263)
106 2v9t_B SLIT homolog 2 protein 99.6 1.5E-14 5.3E-19 141.7 12.6 150 422-583 14-165 (220)
107 2p1m_B Transport inhibitor res 99.6 9.5E-16 3.2E-20 175.5 4.1 206 417-631 103-324 (594)
108 2v9t_B SLIT homolog 2 protein 99.6 2.1E-14 7.3E-19 140.7 13.1 149 399-551 14-166 (220)
109 4ezg_A Putative uncharacterize 99.6 2.9E-14 1E-18 137.3 13.7 148 398-550 46-194 (197)
110 2o6s_A Variable lymphocyte rec 99.5 1.5E-14 5E-19 140.9 10.8 145 401-549 12-160 (208)
111 2o6s_A Variable lymphocyte rec 99.5 1.5E-14 5.1E-19 140.8 10.9 149 422-582 10-160 (208)
112 4glp_A Monocyte differentiatio 99.5 8.9E-15 3E-19 152.1 8.7 196 421-634 93-307 (310)
113 2p1m_B Transport inhibitor res 99.5 2.1E-15 7.2E-20 172.6 4.2 153 417-580 154-324 (594)
114 2qby_B CDC6 homolog 3, cell di 99.5 1.1E-12 3.7E-17 141.1 25.1 286 62-371 20-339 (384)
115 1xeu_A Internalin C; cellular 99.5 3.9E-15 1.3E-19 150.3 5.4 170 417-635 17-186 (263)
116 2xot_A Amphoterin-induced prot 99.5 3.4E-14 1.2E-18 151.0 12.2 171 400-583 22-202 (361)
117 2v70_A SLIT-2, SLIT homolog 2 99.5 6.1E-14 2.1E-18 137.4 12.6 150 422-583 14-166 (220)
118 3e6j_A Variable lymphocyte rec 99.5 5.6E-14 1.9E-18 138.7 12.1 150 421-583 21-172 (229)
119 2v70_A SLIT-2, SLIT homolog 2 99.5 9.4E-14 3.2E-18 136.1 12.4 148 400-551 15-167 (220)
120 2v1u_A Cell division control p 99.5 1.6E-12 5.5E-17 139.9 22.9 289 61-371 18-351 (387)
121 2qby_A CDC6 homolog 1, cell di 99.5 9.9E-13 3.4E-17 141.5 20.9 291 61-371 19-348 (386)
122 3goz_A Leucine-rich repeat-con 99.5 2.6E-14 9E-19 152.1 8.1 227 424-689 3-264 (362)
123 2xot_A Amphoterin-induced prot 99.5 7.7E-14 2.6E-18 148.2 10.2 156 422-586 21-179 (361)
124 3cvr_A Invasion plasmid antige 99.5 8E-14 2.7E-18 155.1 10.6 131 400-550 63-193 (571)
125 3goz_A Leucine-rich repeat-con 99.4 2.1E-14 7.1E-19 152.9 3.2 161 418-584 21-210 (362)
126 2ell_A Acidic leucine-rich nuc 99.4 2.9E-13 9.9E-18 126.6 10.1 128 419-550 24-160 (168)
127 1fnn_A CDC6P, cell division co 99.4 1E-11 3.5E-16 133.7 23.2 287 62-371 17-351 (389)
128 3cvr_A Invasion plasmid antige 99.4 5.9E-13 2E-17 148.2 13.3 134 420-583 60-193 (571)
129 1a9n_A U2A', U2A'; complex (nu 99.4 2.4E-13 8.4E-18 128.1 8.6 140 435-584 13-154 (176)
130 2je0_A Acidic leucine-rich nuc 99.4 3.7E-13 1.3E-17 123.1 8.6 123 419-545 17-148 (149)
131 1a9n_A U2A', U2A'; complex (nu 99.4 3.3E-13 1.1E-17 127.2 7.1 134 413-550 13-153 (176)
132 2ell_A Acidic leucine-rich nuc 99.4 5E-12 1.7E-16 118.2 13.6 133 397-531 25-165 (168)
133 1njg_A DNA polymerase III subu 99.3 2.5E-11 8.6E-16 121.5 17.4 195 62-267 23-231 (250)
134 1w8a_A SLIT protein; signaling 99.3 4.5E-12 1.5E-16 121.2 11.1 128 422-551 11-140 (192)
135 2wfh_A SLIT homolog 2 protein 99.3 3.9E-12 1.3E-16 121.5 10.4 124 422-549 13-138 (193)
136 2wfh_A SLIT homolog 2 protein 99.3 7.9E-12 2.7E-16 119.4 12.1 126 444-583 13-139 (193)
137 2o6r_A Variable lymphocyte rec 99.3 9.2E-12 3.1E-16 117.4 12.4 128 421-551 9-138 (177)
138 2je0_A Acidic leucine-rich nuc 99.3 6.6E-12 2.2E-16 114.7 10.3 122 398-520 19-148 (149)
139 4b8c_D Glucose-repressible alc 99.3 1.3E-12 4.5E-17 151.2 5.5 110 437-550 220-329 (727)
140 1w8a_A SLIT protein; signaling 99.3 1.3E-11 4.3E-16 118.1 11.2 124 399-525 11-139 (192)
141 2chg_A Replication factor C sm 99.3 7.5E-11 2.6E-15 116.0 16.5 182 62-265 17-205 (226)
142 1dce_A Protein (RAB geranylger 99.3 1.4E-12 4.9E-17 146.0 4.4 123 442-576 442-566 (567)
143 4b8c_D Glucose-repressible alc 99.2 8.3E-12 2.8E-16 144.5 9.3 140 409-551 214-355 (727)
144 2o6r_A Variable lymphocyte rec 99.2 5.5E-11 1.9E-15 112.1 11.9 125 400-527 11-139 (177)
145 1dce_A Protein (RAB geranylger 99.2 2.2E-11 7.6E-16 136.3 10.5 121 420-544 442-567 (567)
146 1ds9_A Outer arm dynein; leuci 99.2 4.8E-13 1.6E-17 128.8 -3.0 108 437-549 44-152 (198)
147 1ds9_A Outer arm dynein; leuci 99.1 7.1E-13 2.4E-17 127.6 -5.0 134 407-543 36-180 (198)
148 2r9u_A Variable lymphocyte rec 99.1 2.3E-10 8E-15 107.0 10.1 103 444-551 15-119 (174)
149 3g39_A Variable lymphocyte rec 99.1 3.6E-10 1.2E-14 105.4 10.0 103 443-550 11-115 (170)
150 3g39_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 105.6 9.5 101 421-523 11-113 (170)
151 2r9u_A Variable lymphocyte rec 99.1 4E-10 1.4E-14 105.4 10.0 105 422-529 15-121 (174)
152 1sxj_B Activator 1 37 kDa subu 99.1 9.7E-10 3.3E-14 114.8 13.9 182 62-265 21-211 (323)
153 3sb4_A Hypothetical leucine ri 99.1 2.1E-10 7.3E-15 120.0 8.3 102 488-628 225-328 (329)
154 1hqc_A RUVB; extended AAA-ATPa 99.0 1.6E-08 5.6E-13 105.4 19.8 174 61-267 11-214 (324)
155 1iqp_A RFCS; clamp loader, ext 99.0 3.3E-09 1.1E-13 110.9 12.9 181 62-267 25-215 (327)
156 4fdw_A Leucine rich hypothetic 98.9 2.1E-08 7.2E-13 107.0 17.7 166 420-632 114-282 (401)
157 4fdw_A Leucine rich hypothetic 98.9 3E-08 1E-12 105.9 18.7 216 419-688 135-355 (401)
158 1jr3_A DNA polymerase III subu 98.9 2E-08 6.8E-13 107.1 16.3 192 62-264 16-221 (373)
159 3te6_A Regulatory protein SIR3 98.9 1.3E-08 4.4E-13 103.3 13.7 167 63-232 21-212 (318)
160 3sb4_A Hypothetical leucine ri 98.9 7E-09 2.4E-13 108.3 12.2 283 418-745 24-327 (329)
161 2ifg_A High affinity nerve gro 98.8 9.3E-09 3.2E-13 108.4 9.8 99 447-550 14-116 (347)
162 2chq_A Replication factor C sm 98.8 3.3E-08 1.1E-12 102.8 13.9 178 62-264 17-204 (319)
163 2ifg_A High affinity nerve gro 98.8 2.5E-08 8.7E-13 105.1 11.0 101 423-524 12-115 (347)
164 3bos_A Putative DNA replicatio 98.7 3.4E-08 1.2E-12 98.0 8.0 170 62-265 28-218 (242)
165 1sxj_A Activator 1 95 kDa subu 98.6 2.9E-07 9.9E-12 101.9 15.3 189 62-264 39-253 (516)
166 3h4m_A Proteasome-activating n 98.6 6.6E-07 2.3E-11 91.1 16.9 174 62-263 17-230 (285)
167 3un9_A NLR family member X1; l 98.6 7.2E-09 2.5E-13 109.5 2.0 157 419-583 72-252 (372)
168 1sxj_D Activator 1 41 kDa subu 98.6 2.3E-07 8E-12 97.9 12.8 190 62-263 37-234 (353)
169 1jbk_A CLPB protein; beta barr 98.6 4.2E-08 1.4E-12 93.6 6.1 46 62-108 22-67 (195)
170 2z4s_A Chromosomal replication 98.6 2.7E-07 9.4E-12 99.6 12.6 179 63-262 106-304 (440)
171 3un9_A NLR family member X1; l 98.6 8.1E-09 2.8E-13 109.2 0.4 130 419-551 101-253 (372)
172 3pvs_A Replication-associated 98.5 2.1E-06 7E-11 92.5 18.6 172 61-264 25-215 (447)
173 3pfi_A Holliday junction ATP-d 98.5 7.3E-07 2.5E-11 93.4 14.7 169 61-264 28-227 (338)
174 3u61_B DNA polymerase accessor 98.5 2E-06 6.9E-11 89.3 15.9 173 61-261 25-213 (324)
175 3uk6_A RUVB-like 2; hexameric 98.4 1.4E-06 4.9E-11 92.3 13.5 195 62-264 44-303 (368)
176 1xwi_A SKD1 protein; VPS4B, AA 98.4 2E-05 6.7E-10 81.3 21.6 178 62-265 12-224 (322)
177 3d8b_A Fidgetin-like protein 1 98.4 5.2E-06 1.8E-10 87.1 17.3 177 62-265 84-296 (357)
178 1sxj_E Activator 1 40 kDa subu 98.4 1.1E-06 3.6E-11 92.8 12.1 192 62-264 14-237 (354)
179 2qz4_A Paraplegin; AAA+, SPG7, 98.4 1.1E-05 3.9E-10 80.7 19.0 177 62-263 6-221 (262)
180 1a5t_A Delta prime, HOLB; zinc 98.4 6.9E-06 2.4E-10 85.3 17.4 167 67-263 7-204 (334)
181 1d2n_A N-ethylmaleimide-sensit 98.4 9.1E-06 3.1E-10 81.9 17.7 161 62-256 33-229 (272)
182 1l8q_A Chromosomal replication 98.4 2.2E-06 7.7E-11 88.9 13.4 173 62-260 11-204 (324)
183 1sxj_C Activator 1 40 kDa subu 98.4 3.8E-06 1.3E-10 87.8 14.8 170 62-260 25-208 (340)
184 3b9p_A CG5977-PA, isoform A; A 98.4 1.4E-05 4.7E-10 81.8 18.5 176 62-264 21-233 (297)
185 3eie_A Vacuolar protein sortin 98.3 1.3E-05 4.5E-10 82.8 17.9 176 62-264 18-228 (322)
186 2qp9_X Vacuolar protein sortin 98.3 1.2E-05 4E-10 84.3 17.4 176 62-264 51-261 (355)
187 3syl_A Protein CBBX; photosynt 98.3 4E-06 1.4E-10 86.4 13.7 151 63-234 32-220 (309)
188 3vfd_A Spastin; ATPase, microt 98.3 2.4E-05 8.1E-10 83.3 19.0 176 62-264 115-326 (389)
189 2zan_A Vacuolar protein sortin 98.3 2E-05 6.7E-10 85.2 18.1 178 62-264 134-345 (444)
190 4fs7_A Uncharacterized protein 98.3 8.6E-06 2.9E-10 87.1 15.1 123 416-546 68-194 (394)
191 4gt6_A Cell surface protein; l 98.2 2E-05 6.7E-10 84.3 17.3 103 437-545 83-190 (394)
192 2ra8_A Uncharacterized protein 98.2 1.4E-06 4.9E-11 91.0 8.0 116 460-584 167-293 (362)
193 4b4t_J 26S protease regulatory 98.2 3.1E-05 1.1E-09 80.5 17.7 167 63-257 149-354 (405)
194 2ra8_A Uncharacterized protein 98.2 1.4E-06 4.9E-11 91.0 7.4 147 504-689 164-318 (362)
195 3cf0_A Transitional endoplasmi 98.2 2.7E-05 9.2E-10 79.6 16.8 171 62-259 15-223 (301)
196 2p65_A Hypothetical protein PF 98.2 1.6E-06 5.5E-11 81.9 6.5 46 62-108 22-67 (187)
197 3pxg_A Negative regulator of g 98.1 1.3E-05 4.4E-10 87.3 12.1 148 62-233 180-340 (468)
198 1lv7_A FTSH; alpha/beta domain 98.1 7.1E-05 2.4E-09 74.6 16.7 173 62-261 12-222 (257)
199 4b4t_L 26S protease subunit RP 98.1 5.5E-05 1.9E-09 80.1 15.7 167 63-257 182-387 (437)
200 2gno_A DNA polymerase III, gam 98.1 2.5E-05 8.4E-10 79.4 12.5 144 66-231 1-152 (305)
201 4b4t_M 26S protease regulatory 98.1 4.1E-05 1.4E-09 81.0 14.4 166 63-256 182-386 (434)
202 4b4t_H 26S protease regulatory 98.1 4.5E-05 1.5E-09 80.3 14.4 167 63-257 210-415 (467)
203 4b4t_I 26S protease regulatory 98.0 5.2E-05 1.8E-09 79.0 14.7 167 63-257 183-388 (437)
204 1in4_A RUVB, holliday junction 98.0 4.5E-05 1.5E-09 79.2 13.9 167 62-263 25-222 (334)
205 3e4g_A ATP synthase subunit S, 98.0 3.2E-06 1.1E-10 77.2 4.5 40 654-693 84-129 (176)
206 2r62_A Cell division protease 98.0 5.4E-06 1.9E-10 83.4 6.6 169 62-257 11-218 (268)
207 3n70_A Transport activator; si 98.0 1.3E-05 4.3E-10 72.0 7.7 46 63-108 2-48 (145)
208 4b4t_K 26S protease regulatory 98.0 7.7E-05 2.6E-09 78.8 14.3 167 63-257 173-379 (428)
209 3hu3_A Transitional endoplasmi 97.9 9E-05 3.1E-09 80.5 14.9 175 62-263 204-414 (489)
210 1qvr_A CLPB protein; coiled co 97.9 1.9E-05 6.7E-10 92.9 10.3 173 62-254 170-369 (854)
211 4fs7_A Uncharacterized protein 97.9 8.2E-05 2.8E-09 79.4 14.1 37 437-474 158-194 (394)
212 2w58_A DNAI, primosome compone 97.9 1.8E-05 6.3E-10 75.6 8.0 59 62-123 25-90 (202)
213 3e4g_A ATP synthase subunit S, 97.9 1.1E-05 3.6E-10 73.8 5.7 87 465-551 61-153 (176)
214 1ofh_A ATP-dependent HSL prote 97.9 5.6E-05 1.9E-09 77.8 11.4 47 62-108 15-74 (310)
215 2ce7_A Cell division protein F 97.8 0.00039 1.3E-08 74.8 17.2 169 62-257 16-221 (476)
216 1io0_A Tropomodulin; LRR prote 97.8 1.1E-05 3.8E-10 75.7 4.6 117 461-584 32-165 (185)
217 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00015 5.1E-09 84.5 15.0 153 62-231 186-362 (758)
218 3pxi_A Negative regulator of g 97.8 7.4E-05 2.5E-09 86.9 12.3 149 62-233 180-340 (758)
219 3rw6_A Nuclear RNA export fact 97.7 2.2E-05 7.6E-10 77.5 5.4 58 464-523 169-231 (267)
220 1io0_A Tropomodulin; LRR prote 97.7 1.4E-05 4.7E-10 75.1 3.8 111 437-550 32-164 (185)
221 3rw6_A Nuclear RNA export fact 97.7 4.3E-05 1.5E-09 75.5 6.6 77 440-518 169-257 (267)
222 3ec2_A DNA replication protein 97.7 3.6E-05 1.2E-09 72.0 5.6 114 67-200 19-142 (180)
223 2c9o_A RUVB-like 1; hexameric 97.7 0.00039 1.3E-08 75.4 14.3 47 62-108 37-87 (456)
224 3cf2_A TER ATPase, transitiona 97.6 0.0002 6.8E-09 81.7 11.8 168 63-257 205-407 (806)
225 4gt6_A Cell surface protein; l 97.5 0.0017 5.9E-08 69.1 17.0 274 414-724 82-366 (394)
226 4fcw_A Chaperone protein CLPB; 97.5 0.00011 3.8E-09 75.5 7.0 60 63-125 18-85 (311)
227 3co5_A Putative two-component 97.5 6.4E-05 2.2E-09 67.1 4.4 47 62-108 4-51 (143)
228 2kjq_A DNAA-related protein; s 97.5 4.3E-05 1.5E-09 68.6 2.7 39 83-124 35-73 (149)
229 4h09_A Hypothetical leucine ri 97.4 0.0073 2.5E-07 63.8 20.4 123 417-547 44-168 (379)
230 1ixz_A ATP-dependent metallopr 97.4 0.0016 5.6E-08 64.4 13.8 168 62-257 16-221 (254)
231 2x8a_A Nuclear valosin-contain 97.4 0.0027 9.3E-08 63.4 15.1 147 62-232 10-192 (274)
232 3t15_A Ribulose bisphosphate c 97.4 0.0012 4E-08 66.9 12.6 26 83-108 35-60 (293)
233 3pxi_A Negative regulator of g 97.4 0.00014 4.7E-09 84.7 6.3 144 62-231 491-675 (758)
234 1iy2_A ATP-dependent metallopr 97.3 0.0011 3.6E-08 66.8 11.6 169 61-257 39-245 (278)
235 2dhr_A FTSH; AAA+ protein, hex 97.3 0.0017 5.9E-08 70.2 13.1 166 61-257 30-236 (499)
236 1ypw_A Transitional endoplasmi 97.2 0.0011 3.9E-08 76.8 11.8 168 62-257 204-407 (806)
237 3m6a_A ATP-dependent protease 97.1 0.0032 1.1E-07 69.6 12.7 46 63-108 82-132 (543)
238 2b8t_A Thymidine kinase; deoxy 97.0 0.0003 1E-08 67.3 2.9 113 84-202 12-127 (223)
239 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.00085 2.9E-08 67.2 5.3 69 84-177 123-193 (331)
240 3lw7_A Adenylate kinase relate 96.8 0.015 5E-07 53.6 13.2 23 85-108 2-24 (179)
241 2cvh_A DNA repair and recombin 96.8 0.0033 1.1E-07 60.5 8.9 87 83-176 19-115 (220)
242 3hr8_A Protein RECA; alpha and 96.7 0.0035 1.2E-07 64.6 8.8 87 83-177 60-150 (356)
243 1jr3_D DNA polymerase III, del 96.7 0.0096 3.3E-07 61.8 12.4 161 74-263 9-184 (343)
244 2qgz_A Helicase loader, putati 96.7 0.0012 4E-08 67.3 5.0 55 67-123 133-189 (308)
245 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0029 9.9E-08 61.6 7.8 112 84-201 23-168 (235)
246 1n0w_A DNA repair protein RAD5 96.7 0.0056 1.9E-07 60.0 9.9 92 84-176 24-129 (243)
247 1v5w_A DMC1, meiotic recombina 96.6 0.013 4.4E-07 60.6 12.3 58 83-141 121-181 (343)
248 2zr9_A Protein RECA, recombina 96.6 0.012 4.2E-07 60.7 11.6 86 83-176 60-149 (349)
249 2z43_A DNA repair and recombin 96.6 0.01 3.4E-07 61.0 10.8 93 83-176 106-213 (324)
250 1g5t_A COB(I)alamin adenosyltr 96.5 0.0019 6.4E-08 59.8 4.6 114 85-201 29-163 (196)
251 2bjv_A PSP operon transcriptio 96.5 0.0025 8.5E-08 63.6 5.8 61 62-125 6-67 (265)
252 3io5_A Recombination and repai 96.5 0.009 3.1E-07 59.6 9.5 88 85-178 29-123 (333)
253 1u94_A RECA protein, recombina 96.4 0.015 5.2E-07 60.0 11.1 86 83-176 62-151 (356)
254 1r6b_X CLPA protein; AAA+, N-t 96.4 0.0096 3.3E-07 69.2 10.7 47 62-108 458-512 (758)
255 4h09_A Hypothetical leucine ri 96.4 0.012 4.1E-07 62.1 10.4 103 437-544 236-340 (379)
256 3cf2_A TER ATPase, transitiona 96.4 0.017 5.8E-07 65.9 12.0 167 62-256 477-682 (806)
257 2ehv_A Hypothetical protein PH 96.3 0.004 1.4E-07 61.4 6.2 23 84-106 30-52 (251)
258 3ice_A Transcription terminati 96.3 0.0034 1.2E-07 64.2 5.3 53 73-126 163-215 (422)
259 1qvr_A CLPB protein; coiled co 96.3 0.0049 1.7E-07 72.5 7.4 46 63-108 559-612 (854)
260 1ojl_A Transcriptional regulat 96.2 0.0049 1.7E-07 62.6 6.1 47 62-108 2-49 (304)
261 4a74_A DNA repair and recombin 96.2 0.01 3.6E-07 57.4 8.2 46 84-129 25-73 (231)
262 1xp8_A RECA protein, recombina 96.2 0.012 4E-07 61.1 8.6 86 83-176 73-162 (366)
263 1rz3_A Hypothetical protein rb 96.1 0.0057 1.9E-07 57.9 5.8 43 66-108 2-46 (201)
264 2r44_A Uncharacterized protein 96.1 0.0035 1.2E-07 64.8 4.3 44 62-108 27-70 (331)
265 3c8u_A Fructokinase; YP_612366 96.0 0.006 2.1E-07 58.1 5.2 40 69-108 6-46 (208)
266 2i1q_A DNA repair and recombin 96.0 0.017 5.9E-07 59.2 9.1 59 83-142 97-168 (322)
267 1sky_E F1-ATPase, F1-ATP synth 96.0 0.024 8.1E-07 60.1 9.9 52 85-138 152-204 (473)
268 3nbx_X ATPase RAVA; AAA+ ATPas 95.9 0.0051 1.7E-07 66.7 4.9 44 62-108 22-65 (500)
269 2ck3_D ATP synthase subunit be 95.9 0.085 2.9E-06 55.7 13.5 65 73-139 142-207 (482)
270 3bh0_A DNAB-like replicative h 95.7 0.033 1.1E-06 56.8 9.6 52 83-139 67-118 (315)
271 1qhx_A CPT, protein (chloramph 95.7 0.0058 2E-07 56.5 3.6 24 85-108 4-27 (178)
272 3hws_A ATP-dependent CLP prote 95.7 0.01 3.4E-07 62.2 5.7 46 63-108 16-75 (363)
273 2orw_A Thymidine kinase; TMTK, 95.6 0.00093 3.2E-08 62.2 -2.3 24 85-108 4-27 (184)
274 1fx0_B ATP synthase beta chain 95.6 0.077 2.6E-06 56.3 11.9 101 74-176 155-276 (498)
275 1ypw_A Transitional endoplasmi 95.6 0.0021 7.3E-08 74.6 0.1 149 62-234 477-664 (806)
276 3kb2_A SPBC2 prophage-derived 95.6 0.0067 2.3E-07 55.7 3.4 24 85-108 2-25 (173)
277 3lda_A DNA repair protein RAD5 95.6 0.058 2E-06 56.6 10.9 59 83-142 177-238 (400)
278 1tue_A Replication protein E1; 95.5 0.013 4.5E-07 54.3 4.9 41 68-108 42-82 (212)
279 3vaa_A Shikimate kinase, SK; s 95.4 0.0087 3E-07 56.5 3.6 25 84-108 25-49 (199)
280 1ex7_A Guanylate kinase; subst 95.3 0.0061 2.1E-07 56.4 2.3 24 85-108 2-25 (186)
281 1vma_A Cell division protein F 95.3 0.039 1.3E-06 55.6 8.4 103 69-175 82-195 (306)
282 1um8_A ATP-dependent CLP prote 95.3 0.015 5.2E-07 61.2 5.5 47 62-108 21-96 (376)
283 1ly1_A Polynucleotide kinase; 95.3 0.01 3.5E-07 54.9 3.7 22 85-106 3-24 (181)
284 3sr0_A Adenylate kinase; phosp 95.3 0.018 6.2E-07 54.4 5.3 23 86-108 2-24 (206)
285 3jvv_A Twitching mobility prot 95.2 0.0069 2.4E-07 62.6 2.5 112 84-204 123-234 (356)
286 1odf_A YGR205W, hypothetical 3 95.2 0.018 6.2E-07 57.7 5.5 27 82-108 29-55 (290)
287 3trf_A Shikimate kinase, SK; a 95.2 0.011 3.6E-07 55.2 3.6 25 84-108 5-29 (185)
288 1zp6_A Hypothetical protein AT 95.2 0.011 3.7E-07 55.4 3.6 25 84-108 9-33 (191)
289 3e70_C DPA, signal recognition 95.2 0.1 3.5E-06 53.1 11.1 56 83-141 128-184 (328)
290 1gvn_B Zeta; postsegregational 95.2 0.018 6.1E-07 57.8 5.3 26 83-108 32-57 (287)
291 1kgd_A CASK, peripheral plasma 95.2 0.012 4.2E-07 54.5 3.8 25 84-108 5-29 (180)
292 3uie_A Adenylyl-sulfate kinase 95.2 0.013 4.4E-07 55.4 4.0 26 83-108 24-49 (200)
293 1kag_A SKI, shikimate kinase I 95.1 0.0093 3.2E-07 54.8 2.9 24 85-108 5-28 (173)
294 2px0_A Flagellar biosynthesis 95.1 0.057 2E-06 54.2 8.9 87 83-175 104-191 (296)
295 1pzn_A RAD51, DNA repair and r 95.1 0.045 1.5E-06 56.5 8.2 49 83-131 130-181 (349)
296 3l0o_A Transcription terminati 95.1 0.0081 2.8E-07 61.3 2.4 37 72-108 163-199 (427)
297 2rhm_A Putative kinase; P-loop 95.1 0.013 4.4E-07 55.0 3.7 26 83-108 4-29 (193)
298 3tau_A Guanylate kinase, GMP k 95.1 0.014 4.6E-07 55.6 3.8 26 83-108 7-32 (208)
299 3t61_A Gluconokinase; PSI-biol 95.1 0.01 3.5E-07 56.2 3.0 25 84-108 18-42 (202)
300 1g8p_A Magnesium-chelatase 38 95.0 0.0096 3.3E-07 62.0 2.9 46 62-108 24-69 (350)
301 2ga8_A Hypothetical 39.9 kDa p 95.0 0.024 8.2E-07 57.7 5.6 44 65-108 2-48 (359)
302 3kl4_A SRP54, signal recogniti 95.0 0.1 3.4E-06 55.2 10.5 39 83-124 96-134 (433)
303 3dm5_A SRP54, signal recogniti 95.0 0.14 4.8E-06 54.0 11.6 26 83-108 99-124 (443)
304 3iij_A Coilin-interacting nucl 95.0 0.012 4E-07 54.5 3.0 25 84-108 11-35 (180)
305 2ffh_A Protein (FFH); SRP54, s 94.9 0.067 2.3E-06 56.4 9.1 89 83-175 97-189 (425)
306 1y63_A LMAJ004144AAA protein; 94.9 0.016 5.3E-07 53.9 3.8 25 83-107 9-33 (184)
307 1nks_A Adenylate kinase; therm 94.9 0.013 4.5E-07 54.9 3.4 24 85-108 2-25 (194)
308 4eun_A Thermoresistant glucoki 94.9 0.015 5.1E-07 54.9 3.7 26 83-108 28-53 (200)
309 1zuh_A Shikimate kinase; alpha 94.9 0.014 4.9E-07 53.2 3.5 26 83-108 6-31 (168)
310 3tqc_A Pantothenate kinase; bi 94.9 0.025 8.7E-07 57.2 5.5 45 64-108 69-116 (321)
311 1kht_A Adenylate kinase; phosp 94.9 0.014 4.7E-07 54.7 3.4 24 85-108 4-27 (192)
312 1knq_A Gluconate kinase; ALFA/ 94.9 0.018 6E-07 53.0 4.0 25 84-108 8-32 (175)
313 2qor_A Guanylate kinase; phosp 94.9 0.013 4.5E-07 55.5 3.2 26 83-108 11-36 (204)
314 3cmu_A Protein RECA, recombina 94.9 0.05 1.7E-06 67.9 8.9 86 83-176 1426-1515(2050)
315 1ukz_A Uridylate kinase; trans 94.8 0.018 6E-07 54.6 4.0 26 83-108 14-39 (203)
316 2c95_A Adenylate kinase 1; tra 94.8 0.016 5.4E-07 54.5 3.6 26 83-108 8-33 (196)
317 2plr_A DTMP kinase, probable t 94.8 0.032 1.1E-06 53.1 5.8 25 84-108 4-28 (213)
318 2hf9_A Probable hydrogenase ni 94.8 0.028 9.5E-07 54.2 5.3 40 68-108 23-62 (226)
319 1via_A Shikimate kinase; struc 94.8 0.013 4.4E-07 54.0 2.8 24 85-108 5-28 (175)
320 2ze6_A Isopentenyl transferase 94.8 0.016 5.3E-07 57.1 3.5 24 85-108 2-25 (253)
321 3tr0_A Guanylate kinase, GMP k 94.8 0.018 6.1E-07 54.6 3.8 25 84-108 7-31 (205)
322 3ney_A 55 kDa erythrocyte memb 94.7 0.019 6.5E-07 53.5 3.7 26 83-108 18-43 (197)
323 2yvu_A Probable adenylyl-sulfa 94.7 0.02 6.9E-07 53.3 3.9 26 83-108 12-37 (186)
324 3umf_A Adenylate kinase; rossm 94.7 0.02 6.8E-07 54.4 3.9 26 83-108 28-53 (217)
325 3tlx_A Adenylate kinase 2; str 94.7 0.032 1.1E-06 54.4 5.6 40 69-108 13-53 (243)
326 1tev_A UMP-CMP kinase; ploop, 94.7 0.018 6.1E-07 54.0 3.6 25 84-108 3-27 (196)
327 2p5t_B PEZT; postsegregational 94.7 0.023 7.8E-07 55.9 4.4 26 83-108 31-56 (253)
328 3a00_A Guanylate kinase, GMP k 94.6 0.016 5.3E-07 54.1 3.0 24 85-108 2-25 (186)
329 2j41_A Guanylate kinase; GMP, 94.6 0.02 7E-07 54.3 3.9 25 84-108 6-30 (207)
330 2iyv_A Shikimate kinase, SK; t 94.6 0.015 5E-07 54.1 2.7 24 85-108 3-26 (184)
331 1ye8_A Protein THEP1, hypothet 94.6 0.019 6.6E-07 52.8 3.4 23 86-108 2-24 (178)
332 4a1f_A DNAB helicase, replicat 94.6 0.084 2.9E-06 53.8 8.4 51 84-139 46-96 (338)
333 1j8m_F SRP54, signal recogniti 94.6 0.072 2.5E-06 53.5 7.9 89 84-175 98-189 (297)
334 2jaq_A Deoxyguanosine kinase; 94.6 0.018 6.2E-07 54.5 3.4 23 86-108 2-24 (205)
335 1uf9_A TT1252 protein; P-loop, 94.6 0.022 7.5E-07 53.8 3.9 25 83-107 7-31 (203)
336 3a4m_A L-seryl-tRNA(SEC) kinas 94.5 0.021 7.2E-07 56.4 3.9 26 83-108 3-28 (260)
337 2bdt_A BH3686; alpha-beta prot 94.5 0.02 7E-07 53.4 3.6 23 85-107 3-25 (189)
338 3asz_A Uridine kinase; cytidin 94.5 0.021 7.1E-07 54.4 3.7 26 83-108 5-30 (211)
339 2vli_A Antibiotic resistance p 94.5 0.014 4.8E-07 54.1 2.5 25 84-108 5-29 (183)
340 1ls1_A Signal recognition part 94.5 0.089 3E-06 52.9 8.4 90 83-175 97-189 (295)
341 3k1j_A LON protease, ATP-depen 94.5 0.045 1.5E-06 61.4 6.9 44 62-108 41-84 (604)
342 2wsm_A Hydrogenase expression/ 94.5 0.027 9.1E-07 54.1 4.4 42 66-108 13-54 (221)
343 2xxa_A Signal recognition part 94.5 0.22 7.5E-06 52.8 11.8 104 70-175 78-192 (433)
344 3cm0_A Adenylate kinase; ATP-b 94.5 0.021 7.1E-07 53.1 3.5 25 84-108 4-28 (186)
345 2bwj_A Adenylate kinase 5; pho 94.5 0.02 6.8E-07 53.9 3.4 25 84-108 12-36 (199)
346 1cke_A CK, MSSA, protein (cyti 94.5 0.02 6.7E-07 55.3 3.5 24 85-108 6-29 (227)
347 2qt1_A Nicotinamide riboside k 94.5 0.022 7.5E-07 54.1 3.7 26 83-108 20-45 (207)
348 2cdn_A Adenylate kinase; phosp 94.5 0.022 7.6E-07 53.8 3.7 26 83-108 19-44 (201)
349 1g41_A Heat shock protein HSLU 94.5 0.028 9.7E-07 59.4 4.8 47 62-108 15-74 (444)
350 2qe7_A ATP synthase subunit al 94.5 0.21 7.1E-06 53.1 11.3 99 73-176 151-264 (502)
351 1e6c_A Shikimate kinase; phosp 94.5 0.018 6.1E-07 52.9 2.9 24 85-108 3-26 (173)
352 2z0h_A DTMP kinase, thymidylat 94.4 0.035 1.2E-06 52.1 5.0 23 86-108 2-24 (197)
353 4gp7_A Metallophosphoesterase; 94.4 0.02 7E-07 52.4 3.2 22 84-105 9-30 (171)
354 3rfe_A Platelet glycoprotein I 94.4 0.046 1.6E-06 47.2 5.1 32 467-499 33-65 (130)
355 2if2_A Dephospho-COA kinase; a 94.4 0.021 7.3E-07 54.0 3.3 22 85-106 2-23 (204)
356 2pt5_A Shikimate kinase, SK; a 94.4 0.023 8E-07 51.7 3.5 23 86-108 2-24 (168)
357 1qf9_A UMP/CMP kinase, protein 94.3 0.024 8.3E-07 53.0 3.6 25 84-108 6-30 (194)
358 1uj2_A Uridine-cytidine kinase 94.3 0.026 9.1E-07 55.4 3.9 26 83-108 21-46 (252)
359 2grj_A Dephospho-COA kinase; T 94.3 0.026 8.9E-07 52.6 3.6 26 83-108 11-36 (192)
360 1lvg_A Guanylate kinase, GMP k 94.3 0.02 6.8E-07 53.9 2.9 25 84-108 4-28 (198)
361 1zd8_A GTP:AMP phosphotransfer 94.3 0.024 8.1E-07 54.8 3.5 25 84-108 7-31 (227)
362 2bbw_A Adenylate kinase 4, AK4 94.3 0.025 8.4E-07 55.4 3.6 25 84-108 27-51 (246)
363 1jjv_A Dephospho-COA kinase; P 94.3 0.024 8.3E-07 53.7 3.4 22 85-106 3-24 (206)
364 1xjc_A MOBB protein homolog; s 94.2 0.03 1E-06 50.7 3.7 26 83-108 3-28 (169)
365 1nn5_A Similar to deoxythymidy 94.2 0.026 9E-07 53.9 3.6 25 84-108 9-33 (215)
366 3rfe_A Platelet glycoprotein I 94.2 0.064 2.2E-06 46.3 5.7 53 423-476 12-66 (130)
367 2pbr_A DTMP kinase, thymidylat 94.2 0.025 8.5E-07 53.0 3.4 23 86-108 2-24 (195)
368 2jeo_A Uridine-cytidine kinase 94.2 0.03 1E-06 54.8 4.0 26 83-108 24-49 (245)
369 2wwf_A Thymidilate kinase, put 94.2 0.027 9.3E-07 53.6 3.6 25 84-108 10-34 (212)
370 3oaa_A ATP synthase subunit al 94.2 0.34 1.2E-05 51.4 12.0 97 74-176 152-264 (513)
371 1zu4_A FTSY; GTPase, signal re 94.2 0.06 2.1E-06 54.7 6.3 39 83-124 104-142 (320)
372 1aky_A Adenylate kinase; ATP:A 94.1 0.027 9.4E-07 54.0 3.6 25 84-108 4-28 (220)
373 2pt7_A CAG-ALFA; ATPase, prote 94.1 0.07 2.4E-06 54.6 6.8 101 85-199 172-273 (330)
374 2v54_A DTMP kinase, thymidylat 94.1 0.032 1.1E-06 52.7 3.9 25 84-108 4-28 (204)
375 1htw_A HI0065; nucleotide-bind 94.1 0.035 1.2E-06 49.8 3.9 26 83-108 32-57 (158)
376 1zak_A Adenylate kinase; ATP:A 94.1 0.025 8.4E-07 54.4 3.1 26 83-108 4-29 (222)
377 4e22_A Cytidylate kinase; P-lo 94.1 0.031 1.1E-06 54.9 3.9 26 83-108 26-51 (252)
378 3fb4_A Adenylate kinase; psych 94.0 0.028 9.4E-07 53.8 3.4 23 86-108 2-24 (216)
379 3dl0_A Adenylate kinase; phosp 94.0 0.029 1E-06 53.6 3.5 23 86-108 2-24 (216)
380 2j37_W Signal recognition part 93.9 0.34 1.2E-05 52.3 11.9 38 83-123 100-137 (504)
381 1s96_A Guanylate kinase, GMP k 93.9 0.034 1.2E-06 53.1 3.7 26 83-108 15-40 (219)
382 2ewv_A Twitching motility prot 93.9 0.014 4.8E-07 60.9 1.1 106 83-200 135-243 (372)
383 3gqb_B V-type ATP synthase bet 93.9 0.082 2.8E-06 55.5 6.7 102 74-176 137-261 (464)
384 1znw_A Guanylate kinase, GMP k 93.9 0.033 1.1E-06 52.8 3.6 25 84-108 20-44 (207)
385 3aez_A Pantothenate kinase; tr 93.9 0.036 1.2E-06 56.2 4.0 26 83-108 89-114 (312)
386 1z6g_A Guanylate kinase; struc 93.9 0.029 9.9E-07 53.7 3.1 25 84-108 23-47 (218)
387 3cmu_A Protein RECA, recombina 93.8 0.29 9.8E-06 61.3 12.4 86 83-176 382-471 (2050)
388 2j9r_A Thymidine kinase; TK1, 93.8 0.05 1.7E-06 51.0 4.4 111 83-202 27-139 (214)
389 2pez_A Bifunctional 3'-phospho 93.8 0.04 1.4E-06 50.8 3.8 26 83-108 4-29 (179)
390 2r9v_A ATP synthase subunit al 93.7 0.19 6.6E-06 53.4 9.3 98 74-176 165-277 (515)
391 2yhs_A FTSY, cell division pro 93.7 0.22 7.7E-06 53.1 9.8 26 83-108 292-317 (503)
392 3vr4_D V-type sodium ATPase su 93.7 0.15 5.3E-06 53.5 8.4 100 74-176 141-258 (465)
393 1rj9_A FTSY, signal recognitio 93.7 0.046 1.6E-06 55.1 4.4 26 83-108 101-126 (304)
394 1m7g_A Adenylylsulfate kinase; 93.7 0.041 1.4E-06 52.4 3.8 26 83-108 24-49 (211)
395 2ck3_A ATP synthase subunit al 93.6 0.31 1E-05 51.9 10.6 103 74-176 152-272 (510)
396 3r20_A Cytidylate kinase; stru 93.6 0.038 1.3E-06 53.1 3.5 25 84-108 9-33 (233)
397 1vht_A Dephospho-COA kinase; s 93.6 0.044 1.5E-06 52.5 4.0 23 84-106 4-26 (218)
398 2f6r_A COA synthase, bifunctio 93.6 0.039 1.3E-06 55.2 3.7 24 83-106 74-97 (281)
399 1u0j_A DNA replication protein 93.6 0.072 2.5E-06 51.9 5.4 38 71-108 90-128 (267)
400 3fwy_A Light-independent proto 93.6 0.055 1.9E-06 54.8 4.8 40 83-125 47-86 (314)
401 1sq5_A Pantothenate kinase; P- 93.6 0.073 2.5E-06 54.0 5.7 26 83-108 79-104 (308)
402 3e1s_A Exodeoxyribonuclease V, 93.6 0.097 3.3E-06 58.0 7.0 24 85-108 205-228 (574)
403 1pgv_A TMD-1, tropomodulin TMD 93.5 0.064 2.2E-06 49.8 4.7 116 463-583 39-170 (197)
404 3exa_A TRNA delta(2)-isopenten 93.5 0.047 1.6E-06 54.5 3.9 25 84-108 3-27 (322)
405 4eaq_A DTMP kinase, thymidylat 93.5 0.072 2.5E-06 51.3 5.2 26 83-108 25-50 (229)
406 2c61_A A-type ATP synthase non 93.5 0.29 9.9E-06 51.7 10.1 102 74-175 142-258 (469)
407 3d3q_A TRNA delta(2)-isopenten 93.5 0.043 1.5E-06 55.7 3.7 24 85-108 8-31 (340)
408 2q6t_A DNAB replication FORK h 93.5 0.19 6.5E-06 53.9 9.1 53 83-139 199-251 (444)
409 1xx6_A Thymidine kinase; NESG, 93.5 0.028 9.5E-07 52.3 2.1 109 84-201 8-118 (191)
410 1gtv_A TMK, thymidylate kinase 93.5 0.021 7.3E-07 54.5 1.4 24 85-108 1-24 (214)
411 3p32_A Probable GTPase RV1496/ 93.4 0.13 4.4E-06 53.3 7.3 38 71-108 65-103 (355)
412 3a8t_A Adenylate isopentenyltr 93.3 0.051 1.7E-06 55.0 3.9 25 84-108 40-64 (339)
413 1ak2_A Adenylate kinase isoenz 93.3 0.049 1.7E-06 52.7 3.8 25 84-108 16-40 (233)
414 3crm_A TRNA delta(2)-isopenten 93.3 0.049 1.7E-06 55.0 3.6 24 85-108 6-29 (323)
415 3ake_A Cytidylate kinase; CMP 93.2 0.046 1.6E-06 51.8 3.4 24 85-108 3-26 (208)
416 3vr4_A V-type sodium ATPase ca 93.2 0.22 7.6E-06 53.6 8.8 59 73-136 221-280 (600)
417 3be4_A Adenylate kinase; malar 93.2 0.041 1.4E-06 52.7 2.9 25 84-108 5-29 (217)
418 1np6_A Molybdopterin-guanine d 93.1 0.057 2E-06 49.3 3.6 25 84-108 6-30 (174)
419 1e4v_A Adenylate kinase; trans 93.1 0.048 1.6E-06 52.0 3.2 23 86-108 2-24 (214)
420 3nwj_A ATSK2; P loop, shikimat 93.1 0.043 1.5E-06 53.5 2.9 24 85-108 49-72 (250)
421 2xb4_A Adenylate kinase; ATP-b 93.1 0.05 1.7E-06 52.3 3.3 23 86-108 2-24 (223)
422 3foz_A TRNA delta(2)-isopenten 93.0 0.058 2E-06 53.7 3.7 26 83-108 9-34 (316)
423 3lnc_A Guanylate kinase, GMP k 93.0 0.037 1.3E-06 53.5 2.4 25 84-108 27-52 (231)
424 2i3b_A HCR-ntpase, human cance 93.0 0.045 1.6E-06 50.8 2.9 24 85-108 2-25 (189)
425 3bgw_A DNAB-like replicative h 93.0 0.17 5.8E-06 54.1 7.7 50 83-137 196-245 (444)
426 3end_A Light-independent proto 93.0 0.073 2.5E-06 54.0 4.6 41 83-126 40-80 (307)
427 2r6a_A DNAB helicase, replicat 93.0 0.19 6.6E-06 54.0 8.2 51 83-137 202-252 (454)
428 1fx0_A ATP synthase alpha chai 93.0 0.13 4.4E-06 54.7 6.5 87 83-176 162-265 (507)
429 3mfy_A V-type ATP synthase alp 93.0 0.25 8.4E-06 53.0 8.5 60 73-137 216-276 (588)
430 2onk_A Molybdate/tungstate ABC 92.9 0.057 1.9E-06 52.4 3.5 25 83-108 24-48 (240)
431 2f1r_A Molybdopterin-guanine d 92.9 0.035 1.2E-06 50.6 1.9 24 85-108 3-26 (171)
432 4edh_A DTMP kinase, thymidylat 92.9 0.13 4.4E-06 48.8 5.9 25 84-108 6-30 (213)
433 3iqw_A Tail-anchored protein t 92.9 0.12 4.2E-06 52.7 6.1 46 83-131 15-60 (334)
434 2qmh_A HPR kinase/phosphorylas 92.9 0.053 1.8E-06 50.0 3.0 25 84-108 34-58 (205)
435 3cmw_A Protein RECA, recombina 92.9 0.16 5.6E-06 62.6 8.1 86 83-176 382-471 (1706)
436 1a7j_A Phosphoribulokinase; tr 92.9 0.031 1E-06 56.1 1.5 26 83-108 4-29 (290)
437 2dr3_A UPF0273 protein PH0284; 92.9 0.056 1.9E-06 52.8 3.4 39 84-125 23-61 (247)
438 3io3_A DEHA2D07832P; chaperone 92.8 0.11 3.9E-06 53.2 5.8 49 81-130 15-63 (348)
439 3tif_A Uncharacterized ABC tra 92.8 0.059 2E-06 52.1 3.4 26 83-108 30-55 (235)
440 3b9q_A Chloroplast SRP recepto 92.8 0.066 2.3E-06 53.9 3.9 26 83-108 99-124 (302)
441 3b85_A Phosphate starvation-in 92.8 0.068 2.3E-06 50.5 3.7 23 85-107 23-45 (208)
442 1q57_A DNA primase/helicase; d 92.8 0.29 1E-05 53.5 9.4 52 84-139 242-293 (503)
443 2og2_A Putative signal recogni 92.8 0.12 4.1E-06 53.2 5.8 26 83-108 156-181 (359)
444 2r8r_A Sensor protein; KDPD, P 92.7 0.085 2.9E-06 49.9 4.3 38 85-125 7-44 (228)
445 1pgv_A TMD-1, tropomodulin TMD 92.6 0.1 3.5E-06 48.4 4.5 108 439-548 39-168 (197)
446 2pcj_A ABC transporter, lipopr 92.5 0.056 1.9E-06 51.8 2.9 25 84-108 30-54 (224)
447 3zvl_A Bifunctional polynucleo 92.5 0.065 2.2E-06 56.9 3.6 26 83-108 257-282 (416)
448 2cbz_A Multidrug resistance-as 92.5 0.067 2.3E-06 51.8 3.4 26 83-108 30-55 (237)
449 1g8f_A Sulfate adenylyltransfe 92.5 0.11 3.8E-06 56.1 5.3 46 63-108 373-419 (511)
450 1yrb_A ATP(GTP)binding protein 92.4 0.12 4.2E-06 50.9 5.3 26 83-108 13-38 (262)
451 1ltq_A Polynucleotide kinase; 92.3 0.075 2.6E-06 53.8 3.7 24 85-108 3-26 (301)
452 1b0u_A Histidine permease; ABC 92.2 0.074 2.5E-06 52.4 3.4 26 83-108 31-56 (262)
453 3gfo_A Cobalt import ATP-bindi 92.2 0.067 2.3E-06 53.0 3.0 25 84-108 34-58 (275)
454 3hjn_A DTMP kinase, thymidylat 92.2 0.13 4.3E-06 48.2 4.7 49 86-137 2-50 (197)
455 1svm_A Large T antigen; AAA+ f 92.2 0.15 5.3E-06 52.8 5.8 26 83-108 168-193 (377)
456 2v9p_A Replication protein E1; 92.1 0.087 3E-06 52.8 3.7 26 83-108 125-150 (305)
457 3f9v_A Minichromosome maintena 92.1 0.047 1.6E-06 60.8 2.0 46 62-108 295-351 (595)
458 2olj_A Amino acid ABC transpor 92.1 0.079 2.7E-06 52.1 3.4 26 83-108 49-74 (263)
459 1mv5_A LMRA, multidrug resista 92.1 0.084 2.9E-06 51.4 3.5 26 83-108 27-52 (243)
460 2dyk_A GTP-binding protein; GT 92.1 0.094 3.2E-06 47.0 3.6 24 85-108 2-25 (161)
461 1q3t_A Cytidylate kinase; nucl 92.0 0.093 3.2E-06 50.9 3.8 26 83-108 15-40 (236)
462 2eyu_A Twitching motility prot 92.0 0.1 3.4E-06 51.4 4.0 108 83-202 24-134 (261)
463 1sgw_A Putative ABC transporte 92.0 0.062 2.1E-06 51.0 2.4 25 84-108 35-59 (214)
464 1oix_A RAS-related protein RAB 92.0 0.084 2.9E-06 49.2 3.3 25 84-108 29-53 (191)
465 2ocp_A DGK, deoxyguanosine kin 92.0 0.095 3.2E-06 51.0 3.8 25 84-108 2-26 (241)
466 2zu0_C Probable ATP-dependent 92.0 0.092 3.2E-06 51.9 3.7 25 83-107 45-69 (267)
467 1ji0_A ABC transporter; ATP bi 92.0 0.076 2.6E-06 51.6 3.0 25 84-108 32-56 (240)
468 4g1u_C Hemin import ATP-bindin 91.9 0.075 2.6E-06 52.4 3.0 26 83-108 36-61 (266)
469 1cp2_A CP2, nitrogenase iron p 91.9 0.14 5E-06 50.6 5.2 38 85-125 2-39 (269)
470 2d2e_A SUFC protein; ABC-ATPas 91.9 0.084 2.9E-06 51.6 3.3 24 84-107 29-52 (250)
471 2pze_A Cystic fibrosis transme 91.9 0.077 2.6E-06 51.1 3.0 25 84-108 34-58 (229)
472 1vpl_A ABC transporter, ATP-bi 91.9 0.086 2.9E-06 51.6 3.4 26 83-108 40-65 (256)
473 3cmw_A Protein RECA, recombina 91.9 0.25 8.5E-06 61.0 8.0 86 83-176 1430-1519(1706)
474 2ged_A SR-beta, signal recogni 91.9 0.17 5.8E-06 47.0 5.3 26 83-108 47-72 (193)
475 3lv8_A DTMP kinase, thymidylat 91.9 0.17 5.7E-06 48.8 5.3 25 84-108 27-51 (236)
476 2ghi_A Transport protein; mult 91.9 0.088 3E-06 51.8 3.4 26 83-108 45-70 (260)
477 1g6h_A High-affinity branched- 91.8 0.079 2.7E-06 52.1 3.0 25 84-108 33-57 (257)
478 1w36_D RECD, exodeoxyribonucle 91.8 0.3 1E-05 54.6 8.1 24 85-108 165-188 (608)
479 2ff7_A Alpha-hemolysin translo 91.8 0.081 2.8E-06 51.6 3.0 25 84-108 35-59 (247)
480 2ixe_A Antigen peptide transpo 91.7 0.093 3.2E-06 51.9 3.4 26 83-108 44-69 (271)
481 2wji_A Ferrous iron transport 91.6 0.099 3.4E-06 47.3 3.3 23 85-107 4-26 (165)
482 3kjh_A CO dehydrogenase/acetyl 91.6 0.18 6E-06 49.3 5.4 42 87-131 3-44 (254)
483 3llm_A ATP-dependent RNA helic 91.6 0.5 1.7E-05 45.5 8.5 31 72-105 67-97 (235)
484 3eph_A TRNA isopentenyltransfe 91.6 0.1 3.4E-06 54.1 3.6 24 85-108 3-26 (409)
485 2f9l_A RAB11B, member RAS onco 91.6 0.1 3.5E-06 48.9 3.4 25 84-108 5-29 (199)
486 2yz2_A Putative ABC transporte 91.6 0.098 3.3E-06 51.7 3.4 26 83-108 32-57 (266)
487 3upu_A ATP-dependent DNA helic 91.6 0.12 4.2E-06 55.7 4.5 40 67-108 30-69 (459)
488 2qi9_C Vitamin B12 import ATP- 91.6 0.088 3E-06 51.3 3.0 25 84-108 26-50 (249)
489 2afh_E Nitrogenase iron protei 91.4 0.15 5.1E-06 51.2 4.7 40 84-126 2-41 (289)
490 2vp4_A Deoxynucleoside kinase; 91.4 0.088 3E-06 50.8 2.8 25 83-107 19-43 (230)
491 4tmk_A Protein (thymidylate ki 91.4 0.18 6.2E-06 47.7 4.9 24 85-108 4-27 (213)
492 2zej_A Dardarin, leucine-rich 91.4 0.084 2.9E-06 48.8 2.5 22 86-107 4-25 (184)
493 4hlc_A DTMP kinase, thymidylat 91.4 0.19 6.6E-06 47.2 5.0 24 85-108 3-26 (205)
494 2nq2_C Hypothetical ABC transp 91.3 0.094 3.2E-06 51.3 2.9 25 84-108 31-55 (253)
495 1nlf_A Regulatory protein REPA 91.3 0.099 3.4E-06 52.2 3.2 25 84-108 30-54 (279)
496 2v3c_C SRP54, signal recogniti 91.3 0.12 4.2E-06 54.8 4.0 25 84-108 99-123 (432)
497 2ihy_A ABC transporter, ATP-bi 91.3 0.096 3.3E-06 52.1 3.0 26 83-108 46-71 (279)
498 1cr0_A DNA primase/helicase; R 91.2 0.12 4E-06 52.2 3.6 38 84-123 35-72 (296)
499 3zq6_A Putative arsenical pump 91.1 0.14 4.8E-06 52.3 4.1 46 84-132 14-59 (324)
500 3v9p_A DTMP kinase, thymidylat 91.1 0.13 4.4E-06 49.2 3.5 25 84-108 25-49 (227)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1e-43 Score=399.19 Aligned_cols=313 Identities=14% Similarity=0.156 Sum_probs=248.3
Q ss_pred CCcccchhHHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHHHHHHh--hcccCCCCCCEEEEEEEcCcc--CHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINN--KFVDNPTDFDYVIWVVVSKDL--QLEKIQE 134 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~~--~~~~vv~I~G~~GiGKTtLa~~~~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~ 134 (800)
.+..|||++++++|.++|..+ ++.++|+|+||||+||||||+++|+ +. +...+|+.++||++++.. +...++.
T Consensus 127 ~~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 127 QMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred CCccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHH
Confidence 334359999999999999653 3579999999999999999999998 33 457899999999999875 7899999
Q ss_pred HHHHHhCCCCC-----CCCCCCHHHHHHHHHHHhcCC-ceEEEEccccchhhhhhcCCcCCCCcEEEEEeCCcccccccC
Q 041843 135 TIGKKIGLYTD-----SWKSKSLEEKAQDIFKTLSKK-KFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGGME 208 (800)
Q Consensus 135 ~i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~-~~LlvlDdv~~~~~~~~~~~~~~~~s~iivTtR~~~~~~~~~ 208 (800)
.|+.+++.... .....+.+.....+++.+.++ |+||||||||+..++ .+. ...||+||||||+..++..++
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~--~~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA--QELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH--HHTTCEEEEEESBGGGGGGCC
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc--ccCCCEEEEEcCCHHHHHHcC
Confidence 99999975421 112335667788999999996 999999999998765 221 125999999999999987765
Q ss_pred -ccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q 041843 209 -ARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAMAYKKTPEEWRYAIEVLRRSA 287 (800)
Q Consensus 209 -~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~ 287 (800)
...+|+|++|+.+||++||.++++... ..+.+++++++|+++|+|+||||+++|+.++.+ + |... +.+....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l 355 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKL 355 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHh
Confidence 446899999999999999999987653 235678899999999999999999999998753 2 5443 4444443
Q ss_pred hccCCChhHHHHHHhhhccCCChhhHHHHHh-----------HhccCCCCcccchHHHHHHHHhc--CCcccc--ccchh
Q 041843 288 SEFAGLGKEVYSLLKFSYDCLPNDAIRSCFL-----------YCCLYPEDYSIDKRDLIDCWMCE--GFLEED--KFGTQ 352 (800)
Q Consensus 288 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~l-----------~~~~fp~~~~i~~~~li~~w~a~--g~i~~~--~~~~~ 352 (800)
+... ...+..++.+||+.||+ ++|.||+ |||+||+++.|+ +.+|+|+ ||+... ....+
T Consensus 356 ~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 356 ESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3221 24688899999999988 8999999 999999999999 7899999 999765 23344
Q ss_pred hhHHHHHHHHHHhccccccc---CCcEEEehHHHHHHHHHHhh
Q 041843 353 NRGSHIVTTLVRACLLEEVE---DDQVKMHDVVRDMALWITCE 392 (800)
Q Consensus 353 ~~~~~~~~~L~~~~ll~~~~---~~~~~~h~l~~~~~~~i~~~ 392 (800)
+.+. ++++|++++|++... ..+|+|||++|++|++++.+
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHH
Confidence 5555 999999999998763 35799999999999987755
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=5.7e-38 Score=353.92 Aligned_cols=287 Identities=16% Similarity=0.201 Sum_probs=229.4
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCE-EEEEEEcCccCHHHHHHHHHHHh
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDY-VIWVVVSKDLQLEKIQETIGKKI 140 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l 140 (800)
+..|||++++++|.++|...++.++|+|+||||+||||||+++|++. +...+|+. ++|+++++.++...+...+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34599999999999999874468999999999999999999999865 34567885 99999999999888888877754
Q ss_pred CCCCC----CC-----CCCCHHHHHHHHHHHh---cCCceEEEEccccchhhhhhcCCcCCCCcEEEEEeCCcccccccC
Q 041843 141 GLYTD----SW-----KSKSLEEKAQDIFKTL---SKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGGME 208 (800)
Q Consensus 141 ~~~~~----~~-----~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~~~~~~~~~~~~s~iivTtR~~~~~~~~~ 208 (800)
+.... .. ...+.++....+++.+ .++|+||||||||+..+|+.+ +.|++||||||++.++..+.
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----NLSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----HSSCCEEEECSCSHHHHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----CCCeEEEEeccChHHHHhcC
Confidence 32110 00 0112344556666655 689999999999999888876 36999999999998875444
Q ss_pred ccceEEec------cCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHHhcCC-CHHHHHHHHH
Q 041843 209 ARRKFKVA------CLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAMAYKK-TPEEWRYAIE 281 (800)
Q Consensus 209 ~~~~~~l~------~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~-~~~~w~~~l~ 281 (800)
....|.++ +|+.+||++||.++.+.. . .+...++ |+|+||||+++|+.|+.+. +.++|+..
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-- 350 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-- 350 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC--
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC--
Confidence 44467777 999999999999985432 1 2334443 9999999999999999863 67788652
Q ss_pred HHHhhhhccCCChhHHHHHHhhhccCCChhhH-HHHHhHhccCCCCcccchHHHHHHHHhcCCccccccchhhhHHHHHH
Q 041843 282 VLRRSASEFAGLGKEVYSLLKFSYDCLPNDAI-RSCFLYCCLYPEDYSIDKRDLIDCWMCEGFLEEDKFGTQNRGSHIVT 360 (800)
Q Consensus 282 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~c~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~ 360 (800)
....+..++..||+.|++ +. |.||++||+||+++.|+.+.++.+|+++| ++.+..+++
T Consensus 351 -----------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---------eedAe~~L~ 409 (1221)
T 1vt4_I 351 -----------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---------KSDVMVVVN 409 (1221)
T ss_dssp -----------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---------SHHHHHHHH
T ss_pred -----------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---------HHHHHHHHH
Confidence 125899999999999999 67 99999999999999999999999999887 135778999
Q ss_pred HHHHhcccccc-cCCcEEEehHHHHHH
Q 041843 361 TLVRACLLEEV-EDDQVKMHDVVRDMA 386 (800)
Q Consensus 361 ~L~~~~ll~~~-~~~~~~~h~l~~~~~ 386 (800)
+|+++||++.. ...+|+|||++++++
T Consensus 410 eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 410 KLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 99999999976 457899999998865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-35 Score=372.13 Aligned_cols=314 Identities=20% Similarity=0.272 Sum_probs=254.7
Q ss_pred CCCCCcccchhHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCCEEEEEEEcCccC--HHHHH
Q 041843 58 RPTEPTVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP-TDFDYVIWVVVSKDLQ--LEKIQ 133 (800)
Q Consensus 58 ~~~~~~~vgr~~~~~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~~--~~~~~ 133 (800)
|+.++.||||++++++|.+.|.. +++.++|+|+||||+||||||+++|++..... ..++.++|++++.... ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 34456799999999999999964 34689999999999999999999998852213 3567888999988543 44456
Q ss_pred HHHHHHhCCCC--CCCCCCCHHHHHHHHHHHhcCC--ceEEEEccccchhhhhhcCCcCCCCcEEEEEeCCcccccc-cC
Q 041843 134 ETIGKKIGLYT--DSWKSKSLEEKAQDIFKTLSKK--KFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGG-ME 208 (800)
Q Consensus 134 ~~i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~~--~~LlvlDdv~~~~~~~~~~~~~~~~s~iivTtR~~~~~~~-~~ 208 (800)
..++..+.... ......+.++....++..+.++ |+||||||||+..+++.+ ++|++||||||++.++.. +.
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~----~~~~~ilvTtR~~~~~~~~~~ 275 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF----DNQCQILLTTRDKSVTDSVMG 275 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT----CSSCEEEEEESSTTTTTTCCS
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh----cCCCEEEEEcCCHHHHHhhcC
Confidence 66777775432 1224567788888999999877 999999999999888775 569999999999988743 45
Q ss_pred ccceEEecc-CChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q 041843 209 ARRKFKVAC-LSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAMAYKKTPEEWRYAIEVLRRSA 287 (800)
Q Consensus 209 ~~~~~~l~~-L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~ 287 (800)
....+.+++ |+.+||++||...++... +..++.+++|+++|+|+||||+++|++|+.+. ..|...++.+....
T Consensus 276 ~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 276 PKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp CBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCC
T ss_pred CceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhh
Confidence 667899996 999999999999885433 34467799999999999999999999998754 47999888887654
Q ss_pred hcc-----CCChhHHHHHHhhhccCCChhhHHHHHhHhccCCCCcccchHHHHHHHHhcCCccccccchhhhHHHHHHHH
Q 041843 288 SEF-----AGLGKEVYSLLKFSYDCLPNDAIRSCFLYCCLYPEDYSIDKRDLIDCWMCEGFLEEDKFGTQNRGSHIVTTL 362 (800)
Q Consensus 288 ~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~c~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~L 362 (800)
+.. ......+..++.+||+.|++ +.|.||+|||+||+++.|+.+.++.+|.++ ++.+..++++|
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----------~~~~~~~l~~L 418 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------TEEVEDILQEF 418 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----------HHHHHHHHHHH
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC----------HHHHHHHHHHH
Confidence 321 11225799999999999999 799999999999999999999999999754 35678899999
Q ss_pred HHhcccccccCC---cEEEehHHHHHHHHHHhh
Q 041843 363 VRACLLEEVEDD---QVKMHDVVRDMALWITCE 392 (800)
Q Consensus 363 ~~~~ll~~~~~~---~~~~h~l~~~~~~~i~~~ 392 (800)
++++|++....+ +|+||+++|++++....+
T Consensus 419 ~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 419 VNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 999999877544 499999999999987544
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5.7e-34 Score=325.75 Aligned_cols=308 Identities=20% Similarity=0.288 Sum_probs=239.3
Q ss_pred CCCCCcccchhHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhcccC-CCCC-CEEEEEEEcCccCHHHHHH
Q 041843 58 RPTEPTVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDN-PTDF-DYVIWVVVSKDLQLEKIQE 134 (800)
Q Consensus 58 ~~~~~~~vgr~~~~~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~ 134 (800)
|+.++.||||+.++++|.+.|.. .++.++|+|+||||+||||||++++++. .. ..+| +.++|++++.. +...+..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHH
Confidence 44567899999999999999975 2357899999999999999999999875 22 4567 58999999875 3333333
Q ss_pred H---HHHHhCCC--CCCCCCCCHHHHHHHHHHHhcC--CceEEEEccccchhhhhhcCCcCCCCcEEEEEeCCccccccc
Q 041843 135 T---IGKKIGLY--TDSWKSKSLEEKAQDIFKTLSK--KKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGGM 207 (800)
Q Consensus 135 ~---i~~~l~~~--~~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~~~~~~~~~~~~~s~iivTtR~~~~~~~~ 207 (800)
. +...++.. .......+.+.....+...+.+ +++||||||+|+...++.+ +.+++||||||+..++..+
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l----~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF----DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT----CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh----cCCCeEEEECCCcHHHHhc
Confidence 3 34444421 1122445677778888888876 7899999999998777654 5689999999998887654
Q ss_pred CccceEEe---ccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041843 208 EARRKFKV---ACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAMAYKKTPEEWRYAIEVLR 284 (800)
Q Consensus 208 ~~~~~~~l---~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~l~ 284 (800)
. ...+.+ ++|+.+||++||...++... . ...+.+.+|+++|+|+|+||..+|+.++... ..|...++.+.
T Consensus 274 ~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-~---~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~ 346 (591)
T 1z6t_A 274 M-GPKYVVPVESSLGKEKGLEILSLFVNMKK-A---DLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQ 346 (591)
T ss_dssp C-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-G---GSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHH
T ss_pred C-CCceEeecCCCCCHHHHHHHHHHHhCCCc-c---cccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHH
Confidence 3 344555 58999999999999987532 1 1246789999999999999999999998753 46888888877
Q ss_pred hhhhc-----cCCChhHHHHHHhhhccCCChhhHHHHHhHhccCCCCcccchHHHHHHHHhcCCccccccchhhhHHHHH
Q 041843 285 RSASE-----FAGLGKEVYSLLKFSYDCLPNDAIRSCFLYCCLYPEDYSIDKRDLIDCWMCEGFLEEDKFGTQNRGSHIV 359 (800)
Q Consensus 285 ~~~~~-----~~~~~~~i~~~l~~sy~~L~~~~~k~c~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~ 359 (800)
..... .......+..++..||+.|++ +.|.||+++|+||+++.|+.+.+...|.++ .+.+..++
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----------~~~~~~~l 415 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME----------TEEVEDIL 415 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC----------HHHHHHHH
T ss_pred HhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC----------HHHHHHHH
Confidence 54321 111235799999999999999 799999999999999999999999989643 23567889
Q ss_pred HHHHHhccccccc---CCcEEEehHHHHHHHHH
Q 041843 360 TTLVRACLLEEVE---DDQVKMHDVVRDMALWI 389 (800)
Q Consensus 360 ~~L~~~~ll~~~~---~~~~~~h~l~~~~~~~i 389 (800)
+.|++++|+.... ..+|.||++++++++..
T Consensus 416 ~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 416 QEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 9999999998653 24799999999999876
No 5
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=2.6e-25 Score=252.49 Aligned_cols=170 Identities=21% Similarity=0.298 Sum_probs=135.8
Q ss_pred EEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccc
Q 041843 401 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIML 478 (800)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~ 478 (800)
+...+.++.++|..+. +++++|++++|.+..++ .+.++++|++|++++|.+..+++..|..+++|++|++++| .+
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HL 86 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CC
T ss_pred EECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-cc
Confidence 4445667888887664 78999999999998775 4899999999999999999999888999999999999999 55
Q ss_pred ccccc-cccccccccEEeccCCCCcc--cchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcc
Q 041843 479 RQLPT-GISKLVSLQLLDISYTSVTG--LPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRF 555 (800)
Q Consensus 479 ~~lp~-~i~~L~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~ 555 (800)
..+|. .++++++|++|++++|.++. .|..++++++|++|++++|..+..+|...++++++|++|++++|.+..
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---- 162 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN---- 162 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE----
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc----
Confidence 55554 59999999999999999985 467899999999999999876788886668999999999999998765
Q ss_pred cccccchHHHhhCCCCCcEEEEEeccc
Q 041843 556 SSRYVNVAEELLGLKYLEVLEITFRSF 582 (800)
Q Consensus 556 ~~~~~~~~~~l~~l~~L~~L~l~~~~~ 582 (800)
..+..+..+++|+.|+++.|..
T Consensus 163 -----~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 163 -----YQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp -----ECTTTTTTCSEEEEEEEECSBS
T ss_pred -----cChhhhhccccCceEecccCcc
Confidence 2333444444444444444433
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=7.3e-25 Score=251.85 Aligned_cols=149 Identities=21% Similarity=0.231 Sum_probs=122.1
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCCC--CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPT--VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
..+...+.++..+|..+. ++++.|++++|.+..++. +.++++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n- 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN- 90 (606)
T ss_dssp TEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred CceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-
Confidence 356667778888887665 788999999999887764 788999999999999998888877889999999999998
Q ss_pred ccccc-cccccccccccEEeccCCCCcccc-hhhhcCccCceeccccccccc-ccchhhhCCCCCCcEEEeeecCCCC
Q 041843 477 MLRQL-PTGISKLVSLQLLDISYTSVTGLP-EGLKALVNLKCLNLDWADELV-EVPQQLLSNFSRLRVLRMFATGVGS 551 (800)
Q Consensus 477 ~~~~l-p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~-~lp~~~~~~L~~L~~L~l~~~~~~~ 551 (800)
.+..+ |..|+++++|++|++++|.++.+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+..
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCccee
Confidence 45554 888999999999999999888876 678899999999999886433 46766 7889999999998887654
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=8.9e-25 Score=232.46 Aligned_cols=287 Identities=16% Similarity=0.178 Sum_probs=186.4
Q ss_pred ccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEE
Q 041843 415 VRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLL 494 (800)
Q Consensus 415 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L 494 (800)
...+++++.|++.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++| .+..+| .+.++++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEE
Confidence 34556777788887777777777777788888888877777766 677778888888777 566665 47777888888
Q ss_pred eccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcE
Q 041843 495 DISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEV 574 (800)
Q Consensus 495 ~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 574 (800)
++++|.+..+|. +..+++|++|++++|.....++. +.++++|++|++.+|.+... ..+..+++|+.
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~-----------~~~~~l~~L~~ 181 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV-----------TPIANLTDLYS 181 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC-----------GGGGGCTTCSE
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc-----------hhhccCCCCCE
Confidence 888887777765 77777888888877766565554 67777888888777766531 11667777777
Q ss_pred EEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCC
Q 041843 575 LEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVF 654 (800)
Q Consensus 575 L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~ 654 (800)
|+++.|.+..+.. ......++.+.+.++...... .+..+++|++|++++|..... +. ...+
T Consensus 182 L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~-~~-----------~~~l 242 (347)
T 4fmz_A 182 LSLNYNQIEDISP----LASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNNKITDL-SP-----------LANL 242 (347)
T ss_dssp EECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCC-GG-----------GTTC
T ss_pred EEccCCccccccc----ccCCCccceeecccCCCCCCc---hhhcCCcCCEEEccCCccCCC-cc-----------hhcC
Confidence 7777776655443 222345666666665432221 156667777777777754331 11 1246
Q ss_pred CCccEEeeecCCCCCCChhhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcccccccCCC
Q 041843 655 RSLEEVTVDNCGNLKHLTFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLKSIYWK 734 (800)
Q Consensus 655 ~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 734 (800)
++|+.|++++| .++.++.+..+++|++|++++|. +..+ .....+++|+.|++.+|.--...+..
T Consensus 243 ~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~--------------~~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 243 SQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDI--------------SVLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp TTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCC--------------GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred CCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCC--------------hhhcCCCCCCEEECcCCcCCCcChhH
Confidence 77777777776 55666667777777777777764 2221 12345677777777776432222222
Q ss_pred CCCCCCcceEeecCCCCCCCC
Q 041843 735 PLPLPRLKELTVVDCDSLEKL 755 (800)
Q Consensus 735 ~~~~~~L~~L~l~~c~~L~~L 755 (800)
...+++|+.|++++|+ ++.+
T Consensus 307 l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp HHTCTTCSEEECCSSS-CCCC
T ss_pred hhccccCCEEEccCCc-cccc
Confidence 3456677777777653 4443
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=3.9e-25 Score=259.96 Aligned_cols=149 Identities=19% Similarity=0.249 Sum_probs=92.5
Q ss_pred EEEEcCCCccccCccccccccceEEEccccccCC-CC-CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccc
Q 041843 400 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGN-LP-TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM 477 (800)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~ 477 (800)
.+...+..+...++.+..+++++.|++++|.+.. +| .+..+++|++|++++|.+.+..+.. .+++|++|++++|..
T Consensus 204 ~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 281 (768)
T ss_dssp EEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEE
T ss_pred EEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCcc
Confidence 3444444444433445566666666666666642 22 3566666666666666655444331 566666666666643
Q ss_pred ccccccccccc-ccccEEeccCCCCcc-cchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCC
Q 041843 478 LRQLPTGISKL-VSLQLLDISYTSVTG-LPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVG 550 (800)
Q Consensus 478 ~~~lp~~i~~L-~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 550 (800)
...+|..+..+ ++|++|++++|.++. +|..++++++|++|++++|...+.+|...++++++|++|++++|.+.
T Consensus 282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence 34666666654 777777777777764 66677777777777777776544677665677777777777777654
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=3.5e-24 Score=246.18 Aligned_cols=325 Identities=16% Similarity=0.122 Sum_probs=217.1
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
..+...+.++.++|..+. ..++.|++++|.+..++ .+.++++|++|++++|.+..+.+..|.++++|++|++++|.
T Consensus 15 ~~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp TEEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEECCCCCcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 456677778888987765 47899999999998885 58999999999999999999988889999999999999995
Q ss_pred ccccccccccccccccEEeccCCCCccc-chhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcc
Q 041843 477 MLRQLPTGISKLVSLQLLDISYTSVTGL-PEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRF 555 (800)
Q Consensus 477 ~~~~lp~~i~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~ 555 (800)
.....|..++++++|++|++++|.++.+ |..++++++|++|++++|.. ..++...+..+++|++|++++|.+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~---- 167 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI-SSIKLPKGFPTEKLKVLDFQNNAIHY---- 167 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCC-CCCCCCTTCCCTTCCEEECCSSCCCE----
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcc-cccCcccccCCcccCEEEcccCcccc----
Confidence 5455688999999999999999999997 66789999999999998864 55432125569999999999998875
Q ss_pred cccccchHHHhhCCCCCc--EEEEEeccchhHHHhhhccc----------------------------------------
Q 041843 556 SSRYVNVAEELLGLKYLE--VLEITFRSFEAYQTFLSSQK---------------------------------------- 593 (800)
Q Consensus 556 ~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~~~~---------------------------------------- 593 (800)
..+..++.+++|+ .|+++.|.+...........
T Consensus 168 -----~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~ 242 (606)
T 3t6q_A 168 -----LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242 (606)
T ss_dssp -----ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred -----cChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccc
Confidence 4577788888888 77777776654322111000
Q ss_pred --------c-cccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeec
Q 041843 594 --------L-RSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDN 664 (800)
Q Consensus 594 --------l-~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~ 664 (800)
+ ...++.|.+.++.. ..++...+..+++|++|++++|... .+|..+ ..+++|++|++++
T Consensus 243 i~~~~~~~l~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l----------~~l~~L~~L~l~~ 310 (606)
T 3t6q_A 243 ISPAVFEGLCEMSVESINLQKHYF-FNISSNTFHCFSGLQELDLTATHLS-ELPSGL----------VGLSTLKKLVLSA 310 (606)
T ss_dssp CCGGGGGGGGGSEEEEEECTTCCC-SSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC----------CSCTTCCEEECTT
T ss_pred cChhHhchhhcCceeEEEeecCcc-CccCHHHhccccCCCEEeccCCccC-CCChhh----------cccccCCEEECcc
Confidence 0 00344555554432 2333345777888888888887643 333333 2456677777766
Q ss_pred CCCCCCCh--hhhcCCCCcEEEEecCcchhHhhcc--CCCCCcC----------ccc--CccCCcCCcccEeeccCcccc
Q 041843 665 CGNLKHLT--FLVFAPNLKSISVRDCDDMEEIISA--GEFDDIP----------EMT--GIISSPFAKLQHLQLGGLGRL 728 (800)
Q Consensus 665 c~~l~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~--~~~~~~~----------~l~--~~~~~~~~~L~~L~l~~~~~l 728 (800)
| .++.++ .+..+++|++|++++|.....++.. .....+. ... ......+++|+.|++.++.--
T Consensus 311 n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 311 N-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp C-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred C-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence 6 333332 3556666666666665432122110 0000000 000 112345667777777665332
Q ss_pred cccCCCCCCCCCcceEeecC
Q 041843 729 KSIYWKPLPLPRLKELTVVD 748 (800)
Q Consensus 729 ~~~~~~~~~~~~L~~L~l~~ 748 (800)
...+.....+++|+.|++++
T Consensus 390 ~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 390 SLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp EECTTTTTTCTTCSEEECTT
T ss_pred cCCHHHhcCCccCCeEECCC
Confidence 23333445567777777665
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.9e-23 Score=232.38 Aligned_cols=285 Identities=24% Similarity=0.283 Sum_probs=199.3
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
..+...+..+..+|..+. .+++.|++++|.+..++ .+.++++|++|++++|.+..+++..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n- 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN- 90 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-
Confidence 456667778888887664 58899999999998875 5889999999999999999998888999999999999999
Q ss_pred ccccccc-cccccccccEEeccCCCCccc-chhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCc
Q 041843 477 MLRQLPT-GISKLVSLQLLDISYTSVTGL-PEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGR 554 (800)
Q Consensus 477 ~~~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~ 554 (800)
.+..+|. .+.++++|++|+|++|.+..+ |..+..+++|++|++++|. +..+++..+.++++|++|++.+|.+..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 166 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTS--- 166 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSS---
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcc---
Confidence 6777775 478899999999999999885 5678999999999999875 456655558999999999999998765
Q ss_pred ccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCc
Q 041843 555 FSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWI 634 (800)
Q Consensus 555 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 634 (800)
.....+.++++|+.|+++.|.+..+.. ..+..+++|+.|++++|...
T Consensus 167 ------~~~~~l~~l~~L~~L~l~~n~i~~~~~---------------------------~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 167 ------IPTEALSHLHGLIVLRLRHLNINAIRD---------------------------YSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp ------CCHHHHTTCTTCCEEEEESCCCCEECT---------------------------TCSCSCTTCCEEEEECCTTC
T ss_pred ------cChhHhcccCCCcEEeCCCCcCcEeCh---------------------------hhcccCcccceeeCCCCccc
Confidence 455678899999999999887654321 23455566666666666555
Q ss_pred ceEEeccccccccCCCCcCCCCccEEeeecCCCCCCCh--hhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCC
Q 041843 635 KGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLT--FLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISS 712 (800)
Q Consensus 635 ~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~ 712 (800)
..++.... ...+|+.|++++| .++.++ .+..+++|+.|+|++|. +..+.. ....
T Consensus 214 ~~~~~~~~----------~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~ 269 (477)
T 2id5_A 214 DTMTPNCL----------YGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG------------SMLH 269 (477)
T ss_dssp CEECTTTT----------TTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT------------TSCT
T ss_pred cccCcccc----------cCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccCh------------hhcc
Confidence 54433222 2236666666665 344444 24556666666666654 221111 1233
Q ss_pred cCCcccEeeccCccccccc-CCCCCCCCCcceEeecC
Q 041843 713 PFAKLQHLQLGGLGRLKSI-YWKPLPLPRLKELTVVD 748 (800)
Q Consensus 713 ~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~ 748 (800)
.+++|+.|.+.++ .+..+ +.....+++|+.|++++
T Consensus 270 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 270 ELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp TCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCS
T ss_pred ccccCCEEECCCC-ccceECHHHhcCcccCCEEECCC
Confidence 4555666665553 22222 22334455555555554
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=5.5e-25 Score=256.34 Aligned_cols=334 Identities=12% Similarity=0.093 Sum_probs=219.1
Q ss_pred CccccCccccccccceEEEccccccCC------------------CCC-CC--CCCcceEEEeecCCCcccccccccCCC
Q 041843 407 GLTEAPADVRGWEMGRRLSLMKNSIGN------------------LPT-VP--TCPHLLTLFLNDNPLRTITGGFFQSMP 465 (800)
Q Consensus 407 ~~~~~~~~~~~~~~l~~l~l~~~~~~~------------------l~~-~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~ 465 (800)
.+..+|..+..+++++.|++++|.+.. +|. +. ++++|++|++++|.+.+..|..|.+++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 444588889999999999999999987 774 44 899999999999987666566689999
Q ss_pred CCcEEEccCccccc--cccccccccc-------cccEEeccCCCCcccch--hhhcCccCceecccccccccccchhhhC
Q 041843 466 CLTVLKMSDNIMLR--QLPTGISKLV-------SLQLLDISYTSVTGLPE--GLKALVNLKCLNLDWADELVEVPQQLLS 534 (800)
Q Consensus 466 ~L~~L~Ls~~~~~~--~lp~~i~~L~-------~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~~~ 534 (800)
+|++|++++|..+. .+|..++++. +|++|++++|.++.+|. .++++++|++|++++|.. ..+| . ++
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~-~~ 592 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLE-A-FG 592 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC-CBCC-C-CC
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc-ccch-h-hc
Confidence 99999999995244 5898888776 99999999999999998 899999999999998864 5888 3 89
Q ss_pred CCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCC-CcEEEEEeccchhHHHhhhcccccccceecccccccCCcccc
Q 041843 535 NFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKY-LEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIG 613 (800)
Q Consensus 535 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~ 613 (800)
++++|++|++++|.+. ..+..+.++++ |+.|+++.|.+..++....... ...++.|.+.++......+
T Consensus 593 ~L~~L~~L~Ls~N~l~----------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~-~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE----------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS-VYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp TTSEESEEECCSSCCS----------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTC-SSCEEEEECCSSCTTTTSS
T ss_pred CCCcceEEECcCCccc----------cchHHHhhccccCCEEECcCCCCCcCchhhhccc-cCCCCEEECcCCcCCCccc
Confidence 9999999999999876 34556777888 8888888888765443211110 1126666666654432211
Q ss_pred c--cCcC--CcccCceEEeeccCCcceEEecccc--------------ccccCCCCc--------CCCCccEEeeecCCC
Q 041843 614 V--ADLA--DLEQLNTLYFRSCDWIKGLKIDYKD--------------MVQKSRQPC--------VFRSLEEVTVDNCGN 667 (800)
Q Consensus 614 ~--~~l~--~l~~L~~L~l~~~~~~~~l~~~~~~--------------~~~l~~~~~--------~~~~L~~L~l~~c~~ 667 (800)
. ..+. .+++|+.|++++|... .+|..+.. +..++.... .+++|+.|+|++| .
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~ 739 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-K 739 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-C
T ss_pred cchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-C
Confidence 0 0111 2235555555555433 22222110 001111111 1226777777776 4
Q ss_pred CCCChh-hh--cCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcc------cccccCCCCCCC
Q 041843 668 LKHLTF-LV--FAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLG------RLKSIYWKPLPL 738 (800)
Q Consensus 668 l~~l~~-l~--~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~------~l~~~~~~~~~~ 738 (800)
++.++. +. .+++|+.|+|++|.. ..++ .....+++|+.|.+++++ -...++.....+
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N~L-~~lp-------------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYNCF-SSFP-------------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSSCC-SSCC-------------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CccchHHhhhccCCCcCEEEeCCCCC-Cccc-------------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 445543 33 667777777777642 2121 123456777888776532 233445555667
Q ss_pred CCcceEeecCCCCCCCCCCCCCCCCCcceEEEee
Q 041843 739 PRLKELTVVDCDSLEKLPLDSNSANGRRILIRGD 772 (800)
Q Consensus 739 ~~L~~L~l~~c~~L~~L~~~~n~~~l~~~~i~~~ 772 (800)
++|+.|++++| ++..+|.... .+++.+.+.++
T Consensus 806 ~~L~~L~Ls~N-~L~~Ip~~l~-~~L~~LdLs~N 837 (876)
T 4ecn_A 806 PSLIQLQIGSN-DIRKVDEKLT-PQLYILDIADN 837 (876)
T ss_dssp SSCCEEECCSS-CCCBCCSCCC-SSSCEEECCSC
T ss_pred CCCCEEECCCC-CCCccCHhhc-CCCCEEECCCC
Confidence 77888888776 4577776532 24444444443
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.2e-23 Score=232.76 Aligned_cols=302 Identities=18% Similarity=0.231 Sum_probs=183.4
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIML 478 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~ 478 (800)
+.+...+..+..+| .+..+++++.|++++|.+..++.+.++++|++|++++|.+..+++ +..+++|++|++++| .+
T Consensus 49 ~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l 124 (466)
T 1o6v_A 49 TTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QI 124 (466)
T ss_dssp CEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CC
T ss_pred cEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CC
Confidence 45556666666664 467778888888888888888778888888888888888887776 788888888888888 66
Q ss_pred ccccccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCccccc
Q 041843 479 RQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSR 558 (800)
Q Consensus 479 ~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~ 558 (800)
..+|. +.++++|++|++++|.+..+| .++.+++|++|++++ .+..+++ ++++++|++|++++|.+..
T Consensus 125 ~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~~------- 191 (466)
T 1o6v_A 125 TDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVSD------- 191 (466)
T ss_dssp CCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCCC-------
T ss_pred CCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCCC-------
Confidence 77765 788888888888888888776 477777777777753 2344444 6777777777777776543
Q ss_pred ccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEE
Q 041843 559 YVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLK 638 (800)
Q Consensus 559 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~ 638 (800)
...+..+++|+.|+++.|.+..... ....+.++.|.+.++.... . ..+..+++|+.|++++|......+
T Consensus 192 ----~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 192 ----ISVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKD-I--GTLASLTNLTDLDLANNQISNLAP 260 (466)
T ss_dssp ----CGGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred ----ChhhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCccc-c--hhhhcCCCCCEEECCCCccccchh
Confidence 1235566666677666666554332 1223455666665543221 1 234455566666666554322100
Q ss_pred eccccc-------------cccCCCCcCCCCccEEeeecCCCCCCChhhhcCCCCcEEEEecCcchhHhhccCCCCCcCc
Q 041843 639 IDYKDM-------------VQKSRQPCVFRSLEEVTVDNCGNLKHLTFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPE 705 (800)
Q Consensus 639 ~~~~~~-------------~~l~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 705 (800)
+... ...++ ...+++|+.|++++| .++.++.+..+++|+.|++++|. +..+
T Consensus 261 --~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~----------- 324 (466)
T 1o6v_A 261 --LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDI----------- 324 (466)
T ss_dssp --GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCC-----------
T ss_pred --hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc-CCCc-----------
Confidence 1000 00000 123455555555555 34444445555555555555553 1111
Q ss_pred ccCccCCcCCcccEeeccCcccccccCCCCCCCCCcceEeecCC
Q 041843 706 MTGIISSPFAKLQHLQLGGLGRLKSIYWKPLPLPRLKELTVVDC 749 (800)
Q Consensus 706 l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 749 (800)
.....+++|+.|.+.++ .+..++ ....+++|+.|++++|
T Consensus 325 ---~~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 325 ---SPVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHN 363 (466)
T ss_dssp ---GGGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS
T ss_pred ---hhhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCC
Confidence 11345666777777665 344332 2345667777777665
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.6e-23 Score=221.06 Aligned_cols=298 Identities=15% Similarity=0.173 Sum_probs=236.3
Q ss_pred ccEEEEcCCCccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccc
Q 041843 398 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM 477 (800)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~ 477 (800)
-+.+...+..+..+ +.+..+++++.|++++|.+..++.+..+++|++|++++|.++.++. |..+++|++|++++| .
T Consensus 46 L~~L~l~~~~i~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~ 121 (347)
T 4fmz_A 46 ITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-N 121 (347)
T ss_dssp CSEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-C
T ss_pred ccEEEEeCCccccc-hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-c
Confidence 35667777788877 4588899999999999999999999999999999999999988753 899999999999999 7
Q ss_pred cccccccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccc
Q 041843 478 LRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSS 557 (800)
Q Consensus 478 ~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~ 557 (800)
+..+|. +..+++|++|++++|.....+..+..+++|++|++++|. +..++. +..+++|++|++++|.+..
T Consensus 122 i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~------ 191 (347)
T 4fmz_A 122 ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIED------ 191 (347)
T ss_dssp CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCC------
T ss_pred ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcccc------
Confidence 777776 899999999999999555544569999999999999886 466665 7899999999999998764
Q ss_pred cccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceE
Q 041843 558 RYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGL 637 (800)
Q Consensus 558 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l 637 (800)
.. .+..+++|+.|+++.|.+..... ....+.++.|.+.++..... + .+..+++|++|++++|.... +
T Consensus 192 ----~~-~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~l~~n~l~~-~ 258 (347)
T 4fmz_A 192 ----IS-PLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDL-S--PLANLSQLTWLEIGTNQISD-I 258 (347)
T ss_dssp ----CG-GGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCC-C
T ss_pred ----cc-cccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCC-c--chhcCCCCCEEECCCCccCC-C
Confidence 22 27889999999999998876554 23345889999988764332 2 27889999999999996544 2
Q ss_pred EeccccccccCCCCcCCCCccEEeeecCCCCCCChhhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcc
Q 041843 638 KIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKL 717 (800)
Q Consensus 638 ~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L 717 (800)
.. ...+++|+.|++++| .++.++.+..+++|++|++++|......+ .....+++|
T Consensus 259 -~~----------~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------~~l~~l~~L 313 (347)
T 4fmz_A 259 -NA----------VKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDM-------------EVIGGLTNL 313 (347)
T ss_dssp -GG----------GTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGH-------------HHHHTCTTC
T ss_pred -hh----------HhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcCh-------------hHhhccccC
Confidence 11 135789999999999 77888889999999999999986332221 134568999
Q ss_pred cEeeccCcccccccCCCCCCCCCcceEeecCC
Q 041843 718 QHLQLGGLGRLKSIYWKPLPLPRLKELTVVDC 749 (800)
Q Consensus 718 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 749 (800)
+.|++.+++ +..++. ...+++|+.|++++|
T Consensus 314 ~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 314 TTLFLSQNH-ITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp SEEECCSSS-CCCCGG-GGGCTTCSEESSSCC
T ss_pred CEEEccCCc-cccccC-hhhhhccceeehhhh
Confidence 999999975 444433 345666666666665
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=7.2e-24 Score=243.57 Aligned_cols=148 Identities=15% Similarity=0.103 Sum_probs=80.9
Q ss_pred cEEEEcCCCccccC-ccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCc
Q 041843 399 GFLVYAGSGLTEAP-ADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDN 475 (800)
Q Consensus 399 ~~~~~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~ 475 (800)
+.+...+..+..++ ..+..++++++|++++|.+..++ .|.++++|++|++++|.+..+++..|..+++|++|++++|
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence 34445555555552 34555666666666666665443 2566666666666666666655555666666666666666
Q ss_pred cccccc-cccccccccccEEeccCCCCcccc-hhhhcCccCceecccccccccccchhhhCCCCCCc--EEEeeecC
Q 041843 476 IMLRQL-PTGISKLVSLQLLDISYTSVTGLP-EGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLR--VLRMFATG 548 (800)
Q Consensus 476 ~~~~~l-p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~--~L~l~~~~ 548 (800)
.+..+ |..++++++|++|++++|.+..++ ..+..+++|++|++++|. +..+++..++.+++|+ +|++.+|.
T Consensus 116 -~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 116 -GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp -CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred -CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCc
Confidence 33333 455566666666666666665541 222335666666666553 3344333355555555 45555444
No 15
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=9.5e-24 Score=231.50 Aligned_cols=347 Identities=17% Similarity=0.150 Sum_probs=217.5
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIML 478 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~ 478 (800)
+.+...+..+..+| .+..+++++.|++++|.+..+| +..+++|++|++++|.++.++ +..+++|++|++++| .+
T Consensus 45 ~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l 118 (457)
T 3bz5_A 45 TSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KL 118 (457)
T ss_dssp CEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CC
T ss_pred CEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cC
Confidence 45666666777764 6777788888888888887775 778888888888888887764 678888888888888 66
Q ss_pred ccccccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCccccc
Q 041843 479 RQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSR 558 (800)
Q Consensus 479 ~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~ 558 (800)
..+| ++.+++|++|++++|.++.+| ++.+++|++|++++|..++.++ ++.+++|++|++++|.+..
T Consensus 119 ~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~------- 184 (457)
T 3bz5_A 119 TKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE------- 184 (457)
T ss_dssp SCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC-------
T ss_pred Ceec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce-------
Confidence 6665 788888888888888888875 7788888888888886666663 6788888888888887653
Q ss_pred ccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEE
Q 041843 559 YVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLK 638 (800)
Q Consensus 559 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~ 638 (800)
.+ +..+++|+.|+++.|.+..++ ....+.++.|++.++.... ++ +..+++|+.|++++|.... ++
T Consensus 185 ---l~--l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~-~~ 249 (457)
T 3bz5_A 185 ---LD--VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTE-LD 249 (457)
T ss_dssp ---CC--CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSC-CC
T ss_pred ---ec--cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCC-cC
Confidence 22 667788888888888776641 2233577778887765433 22 6677888888888876543 22
Q ss_pred eccccccccCCCCcCCCCccEEeeecCCCCCCChhhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCccc
Q 041843 639 IDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQ 718 (800)
Q Consensus 639 ~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~ 718 (800)
. .....+.......++|+.|++++|.....++ .+.+++|+.|++++|..++.++... ..+. .......++|+
T Consensus 250 ~--~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~--~~L~---~L~l~~~~~L~ 321 (457)
T 3bz5_A 250 V--STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQA--AGIT---ELDLSQNPKLV 321 (457)
T ss_dssp C--TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTT--CCCS---CCCCTTCTTCC
T ss_pred H--HHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCC--Ccce---EechhhcccCC
Confidence 1 1111111112233455666666665444444 4567888888888887665554311 0111 11123344555
Q ss_pred EeeccCcccccccCCCCCCCCCcceEeecC-----CCCCCCCCCCCCCCCCcceEEEeehhccccceecchhhhhhcccc
Q 041843 719 HLQLGGLGRLKSIYWKPLPLPRLKELTVVD-----CDSLEKLPLDSNSANGRRILIRGDEDWWRRLQWEDEATQNAFRLC 793 (800)
Q Consensus 719 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~-----c~~L~~L~~~~n~~~l~~~~i~~~~~~~~~l~~~~~~~~~~~~~~ 793 (800)
.|.+.++ .+..++ ...+++|+.|++++ ++.|..|++..|...+ .+....+..+++.+|.+...+|+.
T Consensus 322 ~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n~l~g-----~~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 322 YLYLNNT-ELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEA-----EGQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp EEECTTC-CCSCCC--CTTCTTCSEEECCSSCCCBCTTGGGSSGGGTSEEE-----EEEEEECCCBCCBTTBEEEECCTT
T ss_pred EEECCCC-cccccc--cccCCcCcEEECCCCCCCCccccccccccCCcEEe-----cceeeecCccccccCcEEEEcChh
Confidence 5555442 233332 33445555555543 2223333333222111 122234566778888888777765
Q ss_pred ccc
Q 041843 794 FQS 796 (800)
Q Consensus 794 f~~ 796 (800)
+..
T Consensus 394 ~~~ 396 (457)
T 3bz5_A 394 LLD 396 (457)
T ss_dssp CBC
T ss_pred Hhc
Confidence 543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=9.6e-25 Score=250.50 Aligned_cols=232 Identities=13% Similarity=0.189 Sum_probs=152.9
Q ss_pred CCCCCcceEEEeecCCCcc------------------ccccccc--CCCCCcEEEccCccccccccccccccccccEEec
Q 041843 437 VPTCPHLLTLFLNDNPLRT------------------ITGGFFQ--SMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDI 496 (800)
Q Consensus 437 ~~~~~~L~~L~l~~~~l~~------------------~~~~~~~--~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L 496 (800)
+.++++|++|++++|.+++ +|+. +. ++++|++|++++|.....+|..++++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 6778888999999888888 6665 66 8888999999888667788888888889999999
Q ss_pred cCCC-Ccc--cchhhhcC------ccCceecccccccccccch-hhhCCCCCCcEEEeeecCCCCCCcccccccchHHHh
Q 041843 497 SYTS-VTG--LPEGLKAL------VNLKCLNLDWADELVEVPQ-QLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEEL 566 (800)
Q Consensus 497 ~~~~-i~~--lp~~i~~l------~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 566 (800)
++|. ++. +|..++.+ ++|++|++++|.. ..+|. +.++++++|++|++++|.+.+ ..+ .+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l-~~ip~~~~l~~l~~L~~L~L~~N~l~g---------~ip-~~ 349 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-KTFPVETSLQKMKKLGMLECLYNQLEG---------KLP-AF 349 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-SSCCCHHHHTTCTTCCEEECCSCCCEE---------ECC-CC
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-CccCchhhhccCCCCCEEeCcCCcCcc---------chh-hh
Confidence 8887 875 88888876 8899999887764 57887 137888889999888887763 233 66
Q ss_pred hCCCCCcEEEEEeccchhHHHhhhccccccc-ceecccccccCCccccccCcCC--cccCceEEeeccCCcceEEecccc
Q 041843 567 LGLKYLEVLEITFRSFEAYQTFLSSQKLRSC-TQALFLHEFCREESIGVADLAD--LEQLNTLYFRSCDWIKGLKIDYKD 643 (800)
Q Consensus 567 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~-l~~L~l~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~l~~~~~~ 643 (800)
+.+++|+.|+++.|.+..++.. ..-... ++.|++.++... .++ ..+.. +++|+.|++++|......|..+..
T Consensus 350 ~~l~~L~~L~L~~N~l~~lp~~---l~~l~~~L~~L~Ls~N~l~-~lp-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 350 GSEIKLASLNLAYNQITEIPAN---FCGFTEQVENLSFAHNKLK-YIP-NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp EEEEEESEEECCSSEEEECCTT---SEEECTTCCEEECCSSCCS-SCC-SCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred CCCCCCCEEECCCCccccccHh---hhhhcccCcEEEccCCcCc-ccc-hhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 6777778888777776643322 222234 777777766543 332 23333 336777777777654432222210
Q ss_pred ccccCCCCcCCCCccEEeeecCCCCCCChh--hhcCCCCcEEEEecCc
Q 041843 644 MVQKSRQPCVFRSLEEVTVDNCGNLKHLTF--LVFAPNLKSISVRDCD 689 (800)
Q Consensus 644 ~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~~~ 689 (800)
. ......+++|+.|++++| .++.++. +..+++|++|++++|.
T Consensus 425 ~---~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 425 L---DPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp T---CSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred c---ccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC
Confidence 0 000112346666666665 3334432 3345666666666553
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=5.2e-24 Score=243.04 Aligned_cols=148 Identities=24% Similarity=0.274 Sum_probs=102.0
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
..+...+.++.++|..+. .+++.|++++|.+..++ .+.++++|++|++++|.+..+++..|.++++|++|++++|
T Consensus 10 ~~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n- 86 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN- 86 (570)
T ss_dssp TEEECCSSCCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred cEEEeCCCCccccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-
Confidence 345555666777766443 46777777777776665 4677777777777777777777766777777777777777
Q ss_pred ccccc-cccccccccccEEeccCCCCcccch-hhhcCccCceeccccccccc-ccchhhhCCCCCCcEEEeeecCCC
Q 041843 477 MLRQL-PTGISKLVSLQLLDISYTSVTGLPE-GLKALVNLKCLNLDWADELV-EVPQQLLSNFSRLRVLRMFATGVG 550 (800)
Q Consensus 477 ~~~~l-p~~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~-~lp~~~~~~L~~L~~L~l~~~~~~ 550 (800)
.+..+ |..|+++++|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccc
Confidence 44444 4567777777777777777777664 47777777777777665322 34555 677777777777777654
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=2.9e-24 Score=252.49 Aligned_cols=354 Identities=19% Similarity=0.140 Sum_probs=175.2
Q ss_pred ccccceEEEccccccC-CCCC-CCC-CCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccccc-cccccccc
Q 041843 417 GWEMGRRLSLMKNSIG-NLPT-VPT-CPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQ 492 (800)
Q Consensus 417 ~~~~l~~l~l~~~~~~-~l~~-~~~-~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~ 492 (800)
.+++++.|++++|.+. .+|. +.. +++|++|++++|.+.+..+..|..+++|++|++++|.....+|.. +.++++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 4455555555555553 3442 222 355555555555555444444555555555555555322345543 55555555
Q ss_pred EEeccCCCCc-ccchhhhcCc-cCceecccccccccccchhh-------------------------hCCCCCCcEEEee
Q 041843 493 LLDISYTSVT-GLPEGLKALV-NLKCLNLDWADELVEVPQQL-------------------------LSNFSRLRVLRMF 545 (800)
Q Consensus 493 ~L~L~~~~i~-~lp~~i~~l~-~L~~L~l~~~~~l~~lp~~~-------------------------~~~L~~L~~L~l~ 545 (800)
+|++++|.+. .+|..+..+. +|++|++++|.....+|... ++++++|++|+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 5555555554 3555555444 45555555444333333321 3344444444444
Q ss_pred ecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCce
Q 041843 546 ATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNT 625 (800)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~ 625 (800)
+|.+.+ ..+..+..+++|+.|+++.|.+.... .......+.++.|.+.++......+ ..+..+++|+.
T Consensus 427 ~N~l~~---------~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~ 494 (768)
T 3rgz_A 427 FNYLSG---------TIPSSLGSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTGEIP-SGLSNCTNLNW 494 (768)
T ss_dssp SSEEES---------CCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCE
T ss_pred CCcccC---------cccHHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCceEEEecCCcccCcCC-HHHhcCCCCCE
Confidence 443322 23334444444555554444433210 0011122345555555544332222 34555556666
Q ss_pred EEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCCh-hhhcCCCCcEEEEecCcchhHhhccCCCC---
Q 041843 626 LYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLT-FLVFAPNLKSISVRDCDDMEEIISAGEFD--- 701 (800)
Q Consensus 626 L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~--- 701 (800)
|++++|.....+|..+ ..+++|+.|++++|.-...+| .+..+++|+.|++++|.....++..-...
T Consensus 495 L~L~~N~l~~~~p~~~----------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~ 564 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWI----------GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564 (768)
T ss_dssp EECCSSCCCSCCCGGG----------GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred EEccCCccCCcCChHH----------hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccch
Confidence 6666655443333222 246778888887774332333 46777888888888776443333211000
Q ss_pred -Cc--------------------------------------------------CcccC---ccCCcCCcccEeeccCccc
Q 041843 702 -DI--------------------------------------------------PEMTG---IISSPFAKLQHLQLGGLGR 727 (800)
Q Consensus 702 -~~--------------------------------------------------~~l~~---~~~~~~~~L~~L~l~~~~~ 727 (800)
.. ..+.| .....+++|+.|+++++.-
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence 00 00000 0123356677777777543
Q ss_pred ccccCCCCCCCCCcceEeecC-------------CCCCCCCCCCCCCCCCcceEEEeehhccccceecchhhhhhccc
Q 041843 728 LKSIYWKPLPLPRLKELTVVD-------------CDSLEKLPLDSNSANGRRILIRGDEDWWRRLQWEDEATQNAFRL 792 (800)
Q Consensus 728 l~~~~~~~~~~~~L~~L~l~~-------------c~~L~~L~~~~n~~~l~~~~i~~~~~~~~~l~~~~~~~~~~~~~ 792 (800)
-..++.....++.|+.|++++ +++|+.|+++.|..++......+....++.|+..+|++...+|.
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 445666666778888888775 44555556665554433322223334566677777777665553
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=3.3e-23 Score=233.28 Aligned_cols=143 Identities=20% Similarity=0.258 Sum_probs=125.7
Q ss_pred ccEEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCc
Q 041843 398 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDN 475 (800)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~ 475 (800)
.+.+...+..+..+|..+. +++++|++++|.+..++ .+.++++|++|++++|.++.+++..|..+++|++|++++|
T Consensus 2 ~~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CCEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred cceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 3567778888999987766 89999999999998887 4899999999999999999998888999999999999999
Q ss_pred cccccccccccccccccEEeccCCCCcc--cchhhhcCccCceecccccccccccchhhhCCCCCC--cEEEeeecCC
Q 041843 476 IMLRQLPTGISKLVSLQLLDISYTSVTG--LPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRL--RVLRMFATGV 549 (800)
Q Consensus 476 ~~~~~lp~~i~~L~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L--~~L~l~~~~~ 549 (800)
.+..+|.. .+++|++|++++|.++. +|..++++++|++|++++|.. .. ..+..+++| ++|++.+|.+
T Consensus 80 -~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 -KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp -CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC-CG---GGGGGGTTSCEEEEEEEECTT
T ss_pred -ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc-ch---hhccccccceeeEEEeecccc
Confidence 77889987 89999999999999987 578999999999999998764 33 226778888 9999999877
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.7e-23 Score=240.38 Aligned_cols=124 Identities=21% Similarity=0.296 Sum_probs=75.6
Q ss_pred cEEEEcCCCccccCc-cccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCc
Q 041843 399 GFLVYAGSGLTEAPA-DVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDN 475 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~ 475 (800)
+.+...+..+..+++ .+..++++++|++++|.+..++ .+.++++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred CEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence 344555555555544 4556666666666666665553 2566666666666666666665555666666666666666
Q ss_pred ccccccc-ccccccccccEEeccCCCCcc--cchhhhcCccCceecccccc
Q 041843 476 IMLRQLP-TGISKLVSLQLLDISYTSVTG--LPEGLKALVNLKCLNLDWAD 523 (800)
Q Consensus 476 ~~~~~lp-~~i~~L~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~~ 523 (800)
.+..+| ..++++++|++|++++|.+.. +|..++++++|++|++++|.
T Consensus 115 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 115 -KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp -CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred -ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 444433 556666666666666666653 56666666666666666553
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=2.1e-23 Score=247.74 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=125.6
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCC-CcccccccccCCCCCcEEEccCc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNP-LRTITGGFFQSMPCLTVLKMSDN 475 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~Ls~~ 475 (800)
..+...+.++..+|. ..++++.|++++|.+..++ .+.++++|++|++++|. ...+++..|.++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 466777888999976 4579999999999998765 58999999999999995 55676777999999999999999
Q ss_pred cccccccccccccccccEEeccCCCCcc-cchh--hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCC
Q 041843 476 IMLRQLPTGISKLVSLQLLDISYTSVTG-LPEG--LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGS 551 (800)
Q Consensus 476 ~~~~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 551 (800)
......|..|+++++|++|+|++|.+.. +|.. ++++++|++|++++|......|...++++++|++|++++|.+..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 4444558999999999999999999987 5655 89999999999998875444343448999999999999998765
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=9.5e-24 Score=245.95 Aligned_cols=265 Identities=18% Similarity=0.182 Sum_probs=186.9
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCCC--CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPT--VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
..+...+.++..+|..+. .++++|++++|.+..++. +.++++|++|++++|.+..+++..|.++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n- 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN- 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-
Confidence 456677778888887665 789999999999988884 889999999999999999998888999999999999999
Q ss_pred ccccccc-cccccccccEEeccCCCCcccc-hhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCc
Q 041843 477 MLRQLPT-GISKLVSLQLLDISYTSVTGLP-EGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGR 554 (800)
Q Consensus 477 ~~~~lp~-~i~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~ 554 (800)
.+..+|. .|+++++|++|++++|.+..+| ..++++++|++|++++|.. ..+++..++++++|++|++++|.+..
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~--- 159 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQA--- 159 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC-SCCCCCSSSCCTTCCEEECCSSCCCC---
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc-cccCchhhcccccCCEEEccCCcccc---
Confidence 7778876 5999999999999999999976 5789999999999998865 44554458899999999999998765
Q ss_pred ccccccchHHHhh--CCCCCcEEEEEeccchhHHHh-hhc-cc-----------------------ccccceeccccccc
Q 041843 555 FSSRYVNVAEELL--GLKYLEVLEITFRSFEAYQTF-LSS-QK-----------------------LRSCTQALFLHEFC 607 (800)
Q Consensus 555 ~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~-~~~-~~-----------------------l~~~l~~L~l~~~~ 607 (800)
..+..+. .+++|+.|+++.|.+...... +.. .. ....++.|.+.++.
T Consensus 160 ------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~ 233 (680)
T 1ziw_A 160 ------LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233 (680)
T ss_dssp ------BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC
T ss_pred ------cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc
Confidence 2333333 457888888887765443211 000 00 01345566665553
Q ss_pred CCccccccCcCCccc--CceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCC-h-hhhcCCCCcEE
Q 041843 608 REESIGVADLADLEQ--LNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHL-T-FLVFAPNLKSI 683 (800)
Q Consensus 608 ~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l-~-~l~~l~~L~~L 683 (800)
... ..+..+..++. |+.|++++|.... +++.. ...+++|+.|+++++. +..+ + .+..+++|+.|
T Consensus 234 l~~-~~~~~~~~l~~~~L~~L~Ls~n~l~~-~~~~~---------~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 234 LST-TSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDS---------FAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp CCE-ECTTTTGGGGGSCCCEEECTTSCCCE-ECTTT---------TTTCTTCCEEECCSCC-BSEECTTTTTTCTTCCEE
T ss_pred ccc-cChhHhhccCcCCCCEEECCCCCcCc-cCccc---------ccCcccccEeeCCCCc-cCccChhhhcCCCCccEE
Confidence 322 22234444443 7777777775433 22111 1235677777776663 2222 2 35566666666
Q ss_pred EEecC
Q 041843 684 SVRDC 688 (800)
Q Consensus 684 ~l~~~ 688 (800)
+++++
T Consensus 302 ~L~~~ 306 (680)
T 1ziw_A 302 NLKRS 306 (680)
T ss_dssp ECTTC
T ss_pred eccch
Confidence 66654
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=8.9e-24 Score=231.75 Aligned_cols=318 Identities=17% Similarity=0.141 Sum_probs=246.0
Q ss_pred ccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccccccccccccc
Q 041843 413 ADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQ 492 (800)
Q Consensus 413 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~ 492 (800)
..+..+++++.|++++|.+..+|.+..+++|++|++++|.+++++ +..+++|++|++++| .+..+| ++++++|+
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLT 109 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCC
T ss_pred cChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCC
Confidence 455677899999999999999999999999999999999999985 789999999999999 677776 89999999
Q ss_pred EEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCC
Q 041843 493 LLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYL 572 (800)
Q Consensus 493 ~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L 572 (800)
+|++++|.++.+| ++.+++|++|++++|. +..++ ++++++|++|++++|.... .. .+..+++|
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~---------~~--~~~~l~~L 172 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKIT---------KL--DVTPQTQL 172 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCCC---------CC--CCTTCTTC
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCccc---------cc--ccccCCcC
Confidence 9999999999987 8999999999999886 56665 6899999999999996543 22 47788999
Q ss_pred cEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCc
Q 041843 573 EVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPC 652 (800)
Q Consensus 573 ~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~ 652 (800)
+.|+++.|.++.++ ....+.++.|.+.++..... .+..+++|+.|++++|.... +| + .
T Consensus 173 ~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~-ip--~----------~ 230 (457)
T 3bz5_A 173 TTLDCSFNKITELD-----VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE-ID--V----------T 230 (457)
T ss_dssp CEEECCSSCCCCCC-----CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC-CC--C----------T
T ss_pred CEEECCCCccceec-----cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccc-cC--c----------c
Confidence 99999999987753 22345788888887754332 37788999999999987554 33 2 2
Q ss_pred CCCCccEEeeecCCCCCCChhhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcccccccC
Q 041843 653 VFRSLEEVTVDNCGNLKHLTFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLKSIY 732 (800)
Q Consensus 653 ~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~ 732 (800)
.+++|+.|+++++ .++.++ +..+++|+.|+++++ .++.+..+... .. .......+++|+.|++++|..+..++
T Consensus 231 ~l~~L~~L~l~~N-~l~~~~-~~~l~~L~~L~l~~n-~L~~L~l~~n~-~~---~~~~~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 231 PLTQLTYFDCSVN-PLTELD-VSTLSKLTTLHCIQT-DLLEIDLTHNT-QL---IYFQAEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp TCTTCSEEECCSS-CCSCCC-CTTCTTCCEEECTTC-CCSCCCCTTCT-TC---CEEECTTCTTCCCCCCTTCTTCCEEE
T ss_pred ccCCCCEEEeeCC-cCCCcC-HHHCCCCCEEeccCC-CCCEEECCCCc-cC---CcccccccccCCEEECCCCcccceec
Confidence 5789999999998 566655 567788888777654 24433322111 00 01123567899999999998888877
Q ss_pred CCCCCCCCcceEeecCCCCCCCCCCCCCCCCCcceEEEeehhccccceecchhhhh
Q 041843 733 WKPLPLPRLKELTVVDCDSLEKLPLDSNSANGRRILIRGDEDWWRRLQWEDEATQN 788 (800)
Q Consensus 733 ~~~~~~~~L~~L~l~~c~~L~~L~~~~n~~~l~~~~i~~~~~~~~~l~~~~~~~~~ 788 (800)
. .+++|+.|++++|++|+.|.++.|..+.- .+..+ ..++.|+..+|.+..
T Consensus 304 ~---~~~~L~~L~l~~~~~L~~L~L~~N~l~~l--~l~~l-~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 304 C---QAAGITELDLSQNPKLVYLYLNNTELTEL--DVSHN-TKLKSLSCVNAHIQD 353 (457)
T ss_dssp C---TTCCCSCCCCTTCTTCCEEECTTCCCSCC--CCTTC-TTCSEEECCSSCCCB
T ss_pred c---CCCcceEechhhcccCCEEECCCCccccc--ccccC-CcCcEEECCCCCCCC
Confidence 4 45788888899999999998888876552 23333 346667777777665
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.3e-23 Score=244.68 Aligned_cols=331 Identities=14% Similarity=0.107 Sum_probs=229.2
Q ss_pred CC-CCCCCCcceEEEeecCCCcc------------------ccccc-ccCCCCCcEEEccCccccccccccccccccccE
Q 041843 434 LP-TVPTCPHLLTLFLNDNPLRT------------------ITGGF-FQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQL 493 (800)
Q Consensus 434 l~-~~~~~~~L~~L~l~~~~l~~------------------~~~~~-~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~ 493 (800)
+| .+.++++|++|++++|.+++ +|+.+ |.++++|++|+|++|.....+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 55 37789999999999999998 77763 349999999999999778899999999999999
Q ss_pred EeccCCC-Ccc--cchhhhcCc-------cCceecccccccccccch-hhhCCCCCCcEEEeeecCCCCCCcccccccch
Q 041843 494 LDISYTS-VTG--LPEGLKALV-------NLKCLNLDWADELVEVPQ-QLLSNFSRLRVLRMFATGVGSYGRFSSRYVNV 562 (800)
Q Consensus 494 L~L~~~~-i~~--lp~~i~~l~-------~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 562 (800)
|+|++|+ ++. +|..++++. +|++|++++|.. ..+|. +.++++++|++|++++|.+.. .
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~l~~L~~L~~L~Ls~N~l~~----------l 588 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNKVRH----------L 588 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-CBCCCHHHHTTCTTCCEEECTTSCCCB----------C
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC-CccCChhhhhcCCCCCEEECCCCCccc----------c
Confidence 9999997 886 899888877 999999998864 58988 238999999999999998762 3
Q ss_pred HHHhhCCCCCcEEEEEeccchhHHHhhhccccccc-ceecccccccCCccccccCcCCc--ccCceEEeeccCCcceEEe
Q 041843 563 AEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSC-TQALFLHEFCREESIGVADLADL--EQLNTLYFRSCDWIKGLKI 639 (800)
Q Consensus 563 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~-l~~L~l~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~l~~ 639 (800)
+ .++.+++|+.|+++.|.+..++.. ..-... ++.|.+.++... .++ ..+..+ ++|+.|++++|.....++
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~~lp~~---l~~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip- 661 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIEEIPED---FCAFTDQVEGLGFSHNKLK-YIP-NIFNAKSVYVMGSVDFSYNKIGSEGR- 661 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCSCCCTT---SCEECTTCCEEECCSSCCC-SCC-SCCCTTCSSCEEEEECCSSCTTTTSS-
T ss_pred h-hhcCCCcceEEECcCCccccchHH---HhhccccCCEEECcCCCCC-cCc-hhhhccccCCCCEEECcCCcCCCccc-
Confidence 4 788899999999999988754432 222345 999999988754 333 344444 459999999998654321
Q ss_pred ccccccccCCCCcCCCCccEEeeecCCCCCCChh--hhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcc
Q 041843 640 DYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTF--LVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKL 717 (800)
Q Consensus 640 ~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L 717 (800)
.+.. .......++|+.|++++| .++.++. +..+++|+.|+|++|. +..++....... ......+++|
T Consensus 662 ~l~~----~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~-----~~~l~nl~~L 730 (876)
T 4ecn_A 662 NISC----SMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPK-----DGNYKNTYLL 730 (876)
T ss_dssp SCSS----CTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCT-----TSCCTTGGGC
T ss_pred cchh----hhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccc-----cccccccCCc
Confidence 1110 001123458999999988 4556654 3478999999999875 333332110000 0012234588
Q ss_pred cEeeccCcccccccCCCCC--CCCCcceEeecCCCCCCCCCCCC-CCCCCcceEEEe------------------ehhcc
Q 041843 718 QHLQLGGLGRLKSIYWKPL--PLPRLKELTVVDCDSLEKLPLDS-NSANGRRILIRG------------------DEDWW 776 (800)
Q Consensus 718 ~~L~l~~~~~l~~~~~~~~--~~~~L~~L~l~~c~~L~~L~~~~-n~~~l~~~~i~~------------------~~~~~ 776 (800)
+.|+++++ .+..++.... .+++|+.|++++| +++.+|... +..+++.+.+.+ ....+
T Consensus 731 ~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 731 TTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp CEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred cEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence 88888875 5666666554 7788888888774 444454321 113334444322 12345
Q ss_pred ccceecchhhhhhcccccc
Q 041843 777 RRLQWEDEATQNAFRLCFQ 795 (800)
Q Consensus 777 ~~l~~~~~~~~~~~~~~f~ 795 (800)
+.|+..+|.+..++...+.
T Consensus 809 ~~L~Ls~N~L~~Ip~~l~~ 827 (876)
T 4ecn_A 809 IQLQIGSNDIRKVDEKLTP 827 (876)
T ss_dssp CEEECCSSCCCBCCSCCCS
T ss_pred CEEECCCCCCCccCHhhcC
Confidence 6778888888554443443
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=4.3e-24 Score=245.08 Aligned_cols=332 Identities=13% Similarity=0.106 Sum_probs=176.1
Q ss_pred ccccCccccccccceEEEccccccCC------------------CCC-CC--CCCcceEEEeecCCCcccccccccCCCC
Q 041843 408 LTEAPADVRGWEMGRRLSLMKNSIGN------------------LPT-VP--TCPHLLTLFLNDNPLRTITGGFFQSMPC 466 (800)
Q Consensus 408 ~~~~~~~~~~~~~l~~l~l~~~~~~~------------------l~~-~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~ 466 (800)
+..+|..+..+++++.|++++|.+.. +|. +. ++++|++|++++|.+.+..|..|.++++
T Consensus 195 l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 195 ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred CccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 33455566666666677776666655 553 44 5666677777666655444444666666
Q ss_pred CcEEEccCccccc--ccccccccc------ccccEEeccCCCCcccch--hhhcCccCceecccccccccccchhhhCCC
Q 041843 467 LTVLKMSDNIMLR--QLPTGISKL------VSLQLLDISYTSVTGLPE--GLKALVNLKCLNLDWADELVEVPQQLLSNF 536 (800)
Q Consensus 467 L~~L~Ls~~~~~~--~lp~~i~~L------~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L 536 (800)
|++|++++|..+. .+|..++++ ++|++|++++|.++.+|. .++++++|++|++++|...+.+| . ++++
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l 352 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSE 352 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCC
Confidence 6777766663133 466666665 666666666666666666 66666666666666665433666 2 5666
Q ss_pred CCCcEEEeeecCCCCCCcccccccchHHHhhCCCC-CcEEEEEeccchhHHHhhhcccccccceecccccccCCc-----
Q 041843 537 SRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKY-LEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREE----- 610 (800)
Q Consensus 537 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~----- 610 (800)
++|++|++++|.+. ..+..+..+++ |+.|+++.|.+..++...... -...++.|.+.++....
T Consensus 353 ~~L~~L~L~~N~l~----------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 353 IKLASLNLAYNQIT----------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK-SVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp EEESEEECCSSEEE----------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTT-CSSCEEEEECCSSCTTTTTTCS
T ss_pred CCCCEEECCCCccc----------cccHhhhhhcccCcEEEccCCcCcccchhhhhc-ccCccCEEECcCCcCCCcchhh
Confidence 66666666666543 23334555555 556665555554332211100 01134444444433221
Q ss_pred -------------------------cccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecC
Q 041843 611 -------------------------SIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNC 665 (800)
Q Consensus 611 -------------------------~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c 665 (800)
.++...+..+++|+.|++++|... .++...... .......+++|+.|++++|
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~--~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKD--ENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEE--TTEECTTGGGCCEEECCSS
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcc--ccccccccCCccEEECcCC
Confidence 122112233445555555554433 222222110 0000001227777777776
Q ss_pred CCCCCChh-hh--cCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCc------ccccccCCCCC
Q 041843 666 GNLKHLTF-LV--FAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGL------GRLKSIYWKPL 736 (800)
Q Consensus 666 ~~l~~l~~-l~--~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~------~~l~~~~~~~~ 736 (800)
.++.++. +. .+++|+.|+|++|.. ..++ .....+++|+.|+++++ .-...++....
T Consensus 499 -~l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~ip-------------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 499 -KLTKLSDDFRATTLPYLVGIDLSYNSF-SKFP-------------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp -CCCBCCGGGSTTTCTTCCEEECCSSCC-SSCC-------------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred -cCCccChhhhhccCCCcCEEECCCCCC-CCcC-------------hhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 3445543 33 677777777777652 2121 12345677777777542 22344555556
Q ss_pred CCCCcceEeecCCCCCCCCCCCCCCCCCcceEEEee
Q 041843 737 PLPRLKELTVVDCDSLEKLPLDSNSANGRRILIRGD 772 (800)
Q Consensus 737 ~~~~L~~L~l~~c~~L~~L~~~~n~~~l~~~~i~~~ 772 (800)
.+++|+.|++++| +++.+|.... ..++.+.+.++
T Consensus 564 ~l~~L~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N 597 (636)
T 4eco_A 564 LCPSLTQLQIGSN-DIRKVNEKIT-PNISVLDIKDN 597 (636)
T ss_dssp GCSSCCEEECCSS-CCCBCCSCCC-TTCCEEECCSC
T ss_pred cCCCCCEEECCCC-cCCccCHhHh-CcCCEEECcCC
Confidence 6777777777775 4566665433 34444544444
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=5.6e-23 Score=227.45 Aligned_cols=327 Identities=18% Similarity=0.192 Sum_probs=223.9
Q ss_pred ccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEec
Q 041843 417 GWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDI 496 (800)
Q Consensus 417 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L 496 (800)
.+.+++.|++.++.+..+|.+..+++|++|++++|.++.+++ +..+++|++|++++| .+..+|. ++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh-hcCCCCCCEEEC
Confidence 457899999999999999999999999999999999999887 899999999999999 6777776 999999999999
Q ss_pred cCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEE
Q 041843 497 SYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLE 576 (800)
Q Consensus 497 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 576 (800)
++|.++.+|. +.++++|++|++++|. +..+|. ++++++|++|++.+ .... ...+.++++|+.|+
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~-~~~~-----------~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGN-QVTD-----------LKPLANLTTLERLD 183 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEE-SCCC-----------CGGGTTCTTCCEEE
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCC-cccC-----------chhhccCCCCCEEE
Confidence 9999999876 9999999999999886 566765 89999999999964 3322 22388999999999
Q ss_pred EEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCC
Q 041843 577 ITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRS 656 (800)
Q Consensus 577 l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 656 (800)
++.|.+..+.. ......++.|.+.++......+ +..+++|+.|++++|.... + ..+ ..+++
T Consensus 184 l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~-~-~~l----------~~l~~ 244 (466)
T 1o6v_A 184 ISSNKVSDISV----LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKD-I-GTL----------ASLTN 244 (466)
T ss_dssp CCSSCCCCCGG----GGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC-C-GGG----------GGCTT
T ss_pred CcCCcCCCChh----hccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCccc-c-hhh----------hcCCC
Confidence 99998876543 2334688999998876543322 6678999999999987543 1 111 23466
Q ss_pred ccEEeeecCCCCCCChhhhcCCCCcEEEEecCcchhHhhccCCCCCcCc-------ccC-ccCCcCCcccEeeccCcccc
Q 041843 657 LEEVTVDNCGNLKHLTFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPE-------MTG-IISSPFAKLQHLQLGGLGRL 728 (800)
Q Consensus 657 L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~-------l~~-~~~~~~~~L~~L~l~~~~~l 728 (800)
|+.|++++| .+..++.+..+++|++|++++|. +..+........+.. +.+ .....+++|+.|++.++. +
T Consensus 245 L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~-l 321 (466)
T 1o6v_A 245 LTDLDLANN-QISNLAPLSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-I 321 (466)
T ss_dssp CSEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-C
T ss_pred CCEEECCCC-ccccchhhhcCCCCCEEECCCCc-cCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc-C
Confidence 666666665 34444445566666666666553 111111000000000 000 113456777788777753 3
Q ss_pred cccCCCCCCCCCcceEeecCC-----------CCCCCCCCCCCCCCCcceEEEeehhccccceecchhhhh
Q 041843 729 KSIYWKPLPLPRLKELTVVDC-----------DSLEKLPLDSNSANGRRILIRGDEDWWRRLQWEDEATQN 788 (800)
Q Consensus 729 ~~~~~~~~~~~~L~~L~l~~c-----------~~L~~L~~~~n~~~l~~~~i~~~~~~~~~l~~~~~~~~~ 788 (800)
..+.. ...+++|+.|++++| ++|+.|.++.|....... .+....+..|+..+|.+..
T Consensus 322 ~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 322 SDISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCchh-hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 33332 346778888887764 444444444444322111 1111234456666666555
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=4.9e-23 Score=227.87 Aligned_cols=345 Identities=19% Similarity=0.193 Sum_probs=230.8
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCc-ccccccccCCCCCcEEEccCc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLR-TITGGFFQSMPCLTVLKMSDN 475 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~Ls~~ 475 (800)
..+...+.++..+|. + .+++++|++++|.+..++ .+.++++|++|++++|.+. .+++..|.++++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 346667778888866 3 378999999999998764 4899999999999999876 677777899999999999999
Q ss_pred cccccccccccccccccEEeccCCCCcc-cchh--hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCC
Q 041843 476 IMLRQLPTGISKLVSLQLLDISYTSVTG-LPEG--LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSY 552 (800)
Q Consensus 476 ~~~~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~ 552 (800)
......|..++++++|++|++++|.++. +|.. ++.+++|++|++++|......|...++++++|++|++++|.+...
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 5444558889999999999999999987 4544 889999999999988754444655578999999999999987642
Q ss_pred Ccccccc-------------------------cchHHHhhCCCCCcEEEEEeccchhHHH-hhhcccccccceecccccc
Q 041843 553 GRFSSRY-------------------------VNVAEELLGLKYLEVLEITFRSFEAYQT-FLSSQKLRSCTQALFLHEF 606 (800)
Q Consensus 553 ~~~~~~~-------------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~~l~~L~l~~~ 606 (800)
....... ......+..+++|+.|+++.|.+..... ..........++.|.+.++
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 1100000 0000112244677777777776644221 1111111245666666654
Q ss_pred cCCcc---------ccccCcC--CcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCC-h-h
Q 041843 607 CREES---------IGVADLA--DLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHL-T-F 673 (800)
Q Consensus 607 ~~~~~---------~~~~~l~--~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l-~-~ 673 (800)
..... .....+. ..++|+.|++++|......+..+ ..+++|+.|++++|. ++.+ + .
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----------~~l~~L~~L~Ls~n~-l~~~~~~~ 318 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF----------SHFTDLEQLTLAQNE-INKIDDNA 318 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT----------TTCTTCCEEECTTSC-CCEECTTT
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCccccccchhhc----------ccCCCCCEEECCCCc-ccccChhH
Confidence 32111 0001112 13678888888887654322222 346889999998884 4443 2 4
Q ss_pred hhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCccccccc-CCCCCCCCCcceEeecCCCCC
Q 041843 674 LVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLKSI-YWKPLPLPRLKELTVVDCDSL 752 (800)
Q Consensus 674 l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~L 752 (800)
+..+++|++|++++|. +..+.. .....+++|+.|+++++. +..+ +.....+++|+.|+++++ ++
T Consensus 319 ~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l 383 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNF-LGSIDS------------RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN-QL 383 (455)
T ss_dssp TTTCTTCCEEECCSSC-CCEECG------------GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred hcCcccCCEEECCCCc-cCCcCh------------hHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCC-cc
Confidence 6788899999998875 222211 234567888899888864 4444 445667888999998884 67
Q ss_pred CCCCCCC--CCCCCcceEEEee
Q 041843 753 EKLPLDS--NSANGRRILIRGD 772 (800)
Q Consensus 753 ~~L~~~~--n~~~l~~~~i~~~ 772 (800)
+.+|... ....++.+.+.++
T Consensus 384 ~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 384 KSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp SCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCHhHhccCCcccEEEccCC
Confidence 7777543 2245666666544
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=2.4e-22 Score=228.20 Aligned_cols=351 Identities=19% Similarity=0.182 Sum_probs=223.5
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
+.+...+..+..+|..+. ++++.|++++|.+..++ .+.++++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N- 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN- 110 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-
Confidence 577888889999987665 79999999999999887 5899999999999999999998888999999999999999
Q ss_pred ccccccccccccccccEEeccCCCCcccc--hhhhcCccCceecccccccccccchhhhCCCCCC--cEEEeeecCC--C
Q 041843 477 MLRQLPTGISKLVSLQLLDISYTSVTGLP--EGLKALVNLKCLNLDWADELVEVPQQLLSNFSRL--RVLRMFATGV--G 550 (800)
Q Consensus 477 ~~~~lp~~i~~L~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L--~~L~l~~~~~--~ 550 (800)
.+..+|.. .+++|++|++++|.++.+| ..++++++|++|++++|.. ...+ +..+++| ++|++.+|.+ .
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~~~---~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQLD---LLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CTTT---TGGGTTSCEEEEEEEESSCCCC
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc-ccCc---hhhhhhceeeEEEeeccccccc
Confidence 78899987 8999999999999999864 7899999999999998754 3322 5566666 9999999877 2
Q ss_pred CCC--ccccc-------------------------------------------ccchHHHhhCCCCCcEEEEEeccchhH
Q 041843 551 SYG--RFSSR-------------------------------------------YVNVAEELLGLKYLEVLEITFRSFEAY 585 (800)
Q Consensus 551 ~~~--~~~~~-------------------------------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~ 585 (800)
... .+..- ....+..+..+++|+.|++..+.+...
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 211 00000 001122333444444444433322211
Q ss_pred --HHhhhcccccccceecccccccCCccccc-------------------------------------------------
Q 041843 586 --QTFLSSQKLRSCTQALFLHEFCREESIGV------------------------------------------------- 614 (800)
Q Consensus 586 --~~~~~~~~l~~~l~~L~l~~~~~~~~~~~------------------------------------------------- 614 (800)
....... ....++.|.+.++.....++.
T Consensus 265 ~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 265 CSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 0000000 011344444433321111100
Q ss_pred ---cCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCChh----hhcCCCCcEEEEec
Q 041843 615 ---ADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTF----LVFAPNLKSISVRD 687 (800)
Q Consensus 615 ---~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~----l~~l~~L~~L~l~~ 687 (800)
.....+++|++|++++|......+..+ ..+++|+.|+++++ .++.++. +..+++|++|++++
T Consensus 344 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGC----------STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTC----------CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred ccccCccCCCCceEEECCCCccccchhhhh----------cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCC
Confidence 001456777777777776544222222 24567777777766 4444432 45667777777776
Q ss_pred CcchhHhhccC--CCCCcC-------cccCccCCcC-CcccEeeccCcccccccCCCCCCCCCcceEeecCCCCCCCCCC
Q 041843 688 CDDMEEIISAG--EFDDIP-------EMTGIISSPF-AKLQHLQLGGLGRLKSIYWKPLPLPRLKELTVVDCDSLEKLPL 757 (800)
Q Consensus 688 ~~~l~~i~~~~--~~~~~~-------~l~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~L~~L~~ 757 (800)
|.....++... ....+. .+.+..+..+ ++|+.|+++++ .+..++.....+++|+.|+++++ +|+.+|.
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~ 490 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPD 490 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCT
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCH
Confidence 65322122110 000000 1112233445 58999999886 67788876678899999999985 6888886
Q ss_pred C--CCCCCCcceEEEee
Q 041843 758 D--SNSANGRRILIRGD 772 (800)
Q Consensus 758 ~--~n~~~l~~~~i~~~ 772 (800)
. .....++.+.+.++
T Consensus 491 ~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 491 GVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp TSTTTCTTCCCEECCSC
T ss_pred HHHhcCCCCCEEEecCC
Confidence 4 22345666666654
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=6.4e-23 Score=221.68 Aligned_cols=301 Identities=15% Similarity=0.205 Sum_probs=234.0
Q ss_pred ccccceEEEccccccCCCCC--CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc-cccccccccccE
Q 041843 417 GWEMGRRLSLMKNSIGNLPT--VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQL 493 (800)
Q Consensus 417 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~ 493 (800)
.+.+++.+++.++.+..+|. +..+++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence 45789999999999999996 688999999999999999999888999999999999999 55555 566899999999
Q ss_pred EeccCCCCcccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCC
Q 041843 494 LDISYTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYL 572 (800)
Q Consensus 494 L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L 572 (800)
|++++|.++.+|.. ++.+++|++|++++|. +..+++..++++++|++|++++|.+.. . .+..+++|
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~---~~~~l~~L 188 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH---------V---DLSLIPSL 188 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB---------C---CGGGCTTC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc---------c---cccccccc
Confidence 99999999999887 4899999999999886 466766668999999999999998764 1 25667899
Q ss_pred cEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCc
Q 041843 573 EVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPC 652 (800)
Q Consensus 573 ~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~ 652 (800)
+.|+++.|.+..+ .....++.|.+.++.... .+ ...+++|+.|++++|..... .+ ..
T Consensus 189 ~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~-~~---~~~~~~L~~L~l~~n~l~~~---~~---------l~ 245 (390)
T 3o6n_A 189 FHANVSYNLLSTL-------AIPIAVEELDASHNSINV-VR---GPVNVELTILKLQHNNLTDT---AW---------LL 245 (390)
T ss_dssp SEEECCSSCCSEE-------ECCSSCSEEECCSSCCCE-EE---CCCCSSCCEEECCSSCCCCC---GG---------GG
T ss_pred ceeeccccccccc-------CCCCcceEEECCCCeeee-cc---ccccccccEEECCCCCCccc---HH---------Hc
Confidence 9999998876543 223477888887765422 22 12357899999999875541 11 23
Q ss_pred CCCCccEEeeecCCCCCCC--hhhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcccccc
Q 041843 653 VFRSLEEVTVDNCGNLKHL--TFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLKS 730 (800)
Q Consensus 653 ~~~~L~~L~l~~c~~l~~l--~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~ 730 (800)
.+++|+.|+++++ .++.+ ..+..+++|++|++++|. ++.+. .....+++|+.|++.++ .+..
T Consensus 246 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-------------~~~~~l~~L~~L~L~~n-~l~~ 309 (390)
T 3o6n_A 246 NYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALN-------------LYGQPIPTLKVLDLSHN-HLLH 309 (390)
T ss_dssp GCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSC-CCEEE-------------CSSSCCTTCCEEECCSS-CCCC
T ss_pred CCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCc-CcccC-------------cccCCCCCCCEEECCCC-ccee
Confidence 5789999999998 44443 357789999999999875 33221 12356899999999986 5666
Q ss_pred cCCCCCCCCCcceEeecCCCCCCCCCCCCCCCCCcceEEEee
Q 041843 731 IYWKPLPLPRLKELTVVDCDSLEKLPLDSNSANGRRILIRGD 772 (800)
Q Consensus 731 ~~~~~~~~~~L~~L~l~~c~~L~~L~~~~n~~~l~~~~i~~~ 772 (800)
++.....+++|+.|+++++ .++.+|+... ..++.+.+.++
T Consensus 310 ~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~-~~L~~L~l~~N 349 (390)
T 3o6n_A 310 VERNQPQFDRLENLYLDHN-SIVTLKLSTH-HTLKNLTLSHN 349 (390)
T ss_dssp CGGGHHHHTTCSEEECCSS-CCCCCCCCTT-CCCSEEECCSS
T ss_pred cCccccccCcCCEEECCCC-ccceeCchhh-ccCCEEEcCCC
Confidence 6665567899999999986 5788875543 45667776654
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.4e-22 Score=217.15 Aligned_cols=296 Identities=20% Similarity=0.231 Sum_probs=230.0
Q ss_pred ccEEEEcCCCccccCcc-ccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccC
Q 041843 398 EGFLVYAGSGLTEAPAD-VRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSD 474 (800)
Q Consensus 398 ~~~~~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~ 474 (800)
-+.+...+..+..+|+. +..+++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence 45677777788888766 467899999999999998876 589999999999999999999998899999999999999
Q ss_pred cccccccccc-ccccccccEEeccCCCCcccc-hhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCC
Q 041843 475 NIMLRQLPTG-ISKLVSLQLLDISYTSVTGLP-EGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSY 552 (800)
Q Consensus 475 ~~~~~~lp~~-i~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~ 552 (800)
| .+..+|.. +.++++|++|++++|.+..++ ..++.+++|++|++++|. +..++ ++.+++|++|++.+|.+..
T Consensus 127 n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 127 N-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSCCSE-
T ss_pred C-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeecccccccc-
Confidence 9 77888876 489999999999999999975 458999999999999875 46665 5678999999999887653
Q ss_pred CcccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccC
Q 041843 553 GRFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCD 632 (800)
Q Consensus 553 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 632 (800)
+...++|+.|+++.|.+..++. .....++.|.+.++..... ..+..+++|++|++++|.
T Consensus 201 -------------~~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~ 259 (390)
T 3o6n_A 201 -------------LAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE 259 (390)
T ss_dssp -------------EECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC
T ss_pred -------------cCCCCcceEEECCCCeeeeccc-----cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCc
Confidence 2344689999999888766532 2235788899888765432 457788999999999997
Q ss_pred CcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCChh-hhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccC
Q 041843 633 WIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTF-LVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIIS 711 (800)
Q Consensus 633 ~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~ 711 (800)
.....+..+. .+++|+.|+++++ .++.++. ...+++|++|++++|. +..++. ..
T Consensus 260 l~~~~~~~~~----------~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------------~~ 314 (390)
T 3o6n_A 260 LEKIMYHPFV----------KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVER-------------NQ 314 (390)
T ss_dssp CCEEESGGGT----------TCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGG-------------GH
T ss_pred CCCcChhHcc----------ccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCc-------------cc
Confidence 6553333332 4789999999998 5565553 4578999999999985 333321 23
Q ss_pred CcCCcccEeeccCcccccccCCCCCCCCCcceEeecC
Q 041843 712 SPFAKLQHLQLGGLGRLKSIYWKPLPLPRLKELTVVD 748 (800)
Q Consensus 712 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 748 (800)
..+++|+.|++.++. +..++ ...+++|+.|++++
T Consensus 315 ~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 315 PQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSH 348 (390)
T ss_dssp HHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCS
T ss_pred cccCcCCEEECCCCc-cceeC--chhhccCCEEEcCC
Confidence 457899999998853 44443 34566666666665
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=231.22 Aligned_cols=148 Identities=22% Similarity=0.256 Sum_probs=105.1
Q ss_pred cEEEEcCCCccccCc-cccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCc
Q 041843 399 GFLVYAGSGLTEAPA-DVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDN 475 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~ 475 (800)
+.+...+..+..+++ .+..++++++|++++|.+..++ .+.++++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence 445566666666543 5677788888888888887765 3778888888888888888887777888888888888888
Q ss_pred cccccccc-cccccccccEEeccCCCCcc--cchhhhcCccCceecccccccccccchhhhCCCCCC----cEEEeeecC
Q 041843 476 IMLRQLPT-GISKLVSLQLLDISYTSVTG--LPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRL----RVLRMFATG 548 (800)
Q Consensus 476 ~~~~~lp~-~i~~L~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L----~~L~l~~~~ 548 (800)
.+..+|. .++++++|++|++++|.++. +|..++++++|++|++++|.. ..+++..++.+++| +.|++++|.
T Consensus 111 -~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 111 -NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp -CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred -ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhcccCCCC
Confidence 5666654 57788888888888887775 677888888888888887643 44443334445444 445554443
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=222.42 Aligned_cols=278 Identities=20% Similarity=0.256 Sum_probs=216.1
Q ss_pred eEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccc-ccccccccccccEEeccCCC
Q 041843 422 RRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQ-LPTGISKLVSLQLLDISYTS 500 (800)
Q Consensus 422 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~-lp~~i~~L~~L~~L~L~~~~ 500 (800)
+.++.+++.+..+|... .+++++|++++|.++.+++..|..+++|++|+|++| .+.. .|..+.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc
Confidence 46777788888888522 368999999999999998888999999999999999 5554 48899999999999999999
Q ss_pred Ccccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEe
Q 041843 501 VTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITF 579 (800)
Q Consensus 501 i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 579 (800)
++.+|.. +.++++|++|++++|.. ..+++..+.++++|++|++.+|.+.. ..+..+.++++|+.|+++.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVY---------ISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEEECCTTCCE---------ECTTSSTTCTTCCEEEEES
T ss_pred CCccCcccccCCCCCCEEECCCCcc-ccCChhHccccccCCEEECCCCccce---------eChhhccCCCCCCEEECCC
Confidence 9998875 68999999999998864 55555558999999999999998765 4456788899999999998
Q ss_pred ccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccE
Q 041843 580 RSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEE 659 (800)
Q Consensus 580 ~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~ 659 (800)
|.+..+.. ..+..+++|+.|++++|.... ++.. ....+++|+.
T Consensus 162 n~l~~~~~---------------------------~~l~~l~~L~~L~l~~n~i~~-~~~~---------~~~~l~~L~~ 204 (477)
T 2id5_A 162 CNLTSIPT---------------------------EALSHLHGLIVLRLRHLNINA-IRDY---------SFKRLYRLKV 204 (477)
T ss_dssp CCCSSCCH---------------------------HHHTTCTTCCEEEEESCCCCE-ECTT---------CSCSCTTCCE
T ss_pred CcCcccCh---------------------------hHhcccCCCcEEeCCCCcCcE-eChh---------hcccCcccce
Confidence 87654221 236678999999999987554 2221 1235789999
Q ss_pred EeeecCCCCCCChh-hhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcccccccCC-CCCC
Q 041843 660 VTVDNCGNLKHLTF-LVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLKSIYW-KPLP 737 (800)
Q Consensus 660 L~l~~c~~l~~l~~-l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~ 737 (800)
|++++|..+..++. .....+|++|++++|. ++.++. .....+++|+.|+++++. +..++. ....
T Consensus 205 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 270 (477)
T 2id5_A 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPY------------LAVRHLVYLRFLNLSYNP-ISTIEGSMLHE 270 (477)
T ss_dssp EEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCH------------HHHTTCTTCCEEECCSSC-CCEECTTSCTT
T ss_pred eeCCCCccccccCcccccCccccEEECcCCc-ccccCH------------HHhcCccccCeeECCCCc-CCccChhhccc
Confidence 99999977766543 4455699999999985 332221 234568899999999864 555543 3567
Q ss_pred CCCcceEeecC-------------CCCCCCCCCCCCCC
Q 041843 738 LPRLKELTVVD-------------CDSLEKLPLDSNSA 762 (800)
Q Consensus 738 ~~~L~~L~l~~-------------c~~L~~L~~~~n~~ 762 (800)
+++|+.|++++ |++|+.|.++.|.+
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC
Confidence 88999998875 56777777777653
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=8.3e-22 Score=229.55 Aligned_cols=75 Identities=25% Similarity=0.210 Sum_probs=33.3
Q ss_pred EEEcCCCccccCc-cccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCc
Q 041843 401 LVYAGSGLTEAPA-DVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDN 475 (800)
Q Consensus 401 ~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~ 475 (800)
+...+..+..+|+ .+..++++++|++++|.+..++ .+.++++|++|++++|.+...++..|..+++|++|++++|
T Consensus 78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred EECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 3333334444433 2444444444444444444443 2444444444444444444444443444444444444444
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=2.1e-21 Score=218.46 Aligned_cols=144 Identities=19% Similarity=0.191 Sum_probs=123.8
Q ss_pred eEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccc-ccccccccccccEEeccCCC
Q 041843 422 RRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQ-LPTGISKLVSLQLLDISYTS 500 (800)
Q Consensus 422 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~-lp~~i~~L~~L~~L~L~~~~ 500 (800)
+.+++++|.+..+|.... ++|++|++++|.+..+++..|..+++|++|++++| .+.. .|..++++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc
Confidence 579999999999996333 89999999999999999888999999999999999 5555 48899999999999999999
Q ss_pred CcccchhhhcCccCceeccccccccc-ccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCC--cEEEE
Q 041843 501 VTGLPEGLKALVNLKCLNLDWADELV-EVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYL--EVLEI 577 (800)
Q Consensus 501 i~~lp~~i~~l~~L~~L~l~~~~~l~-~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L--~~L~l 577 (800)
++.+|.. .+++|++|++++|.... .+|.. ++++++|++|++++|.+.. ..+..+++| +.|++
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~------------~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK------------SSVLPIAHLNISKVLL 145 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG------------GGGGGGTTSCEEEEEE
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccch------------hhccccccceeeEEEe
Confidence 9999987 89999999999886533 35555 8999999999999998753 235556666 99999
Q ss_pred Eeccc
Q 041843 578 TFRSF 582 (800)
Q Consensus 578 ~~~~~ 582 (800)
+.|.+
T Consensus 146 ~~n~l 150 (520)
T 2z7x_B 146 VLGET 150 (520)
T ss_dssp EECTT
T ss_pred ecccc
Confidence 99887
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=1.7e-22 Score=223.51 Aligned_cols=343 Identities=15% Similarity=0.139 Sum_probs=225.9
Q ss_pred eEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc-cccccccccccEEeccCCC
Q 041843 422 RRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQLLDISYTS 500 (800)
Q Consensus 422 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~~ 500 (800)
+.++..++.+..+|.+. ++|++|++++|.++.+++..|.++++|++|++++|.....+ |..+.++++|++|++++|.
T Consensus 13 ~~~~c~~~~l~~lp~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 13 YNAICINRGLHQVPELP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TEEECCSSCCSSCCCCC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cccCcCCCCcccCCCCC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 45777788888888833 89999999999999998888999999999999999544455 5679999999999999999
Q ss_pred Cccc-chhhhcCccCceecccccccccccch-hhhCCCCCCcEEEeeecCCCCCCcccccccchHHH-hhCCCCCcEEEE
Q 041843 501 VTGL-PEGLKALVNLKCLNLDWADELVEVPQ-QLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEE-LLGLKYLEVLEI 577 (800)
Q Consensus 501 i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l 577 (800)
++.+ |..++++++|++|++++|.....+|. ..++++++|++|++++|.+.. ..+.. +.++++|+.|++
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK---------IQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS---------CCCCGGGGGCTTCCEEEC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc---------cCcccccCCCCcccEEeC
Confidence 9986 77899999999999999875433333 347899999999999998875 33333 788999999999
Q ss_pred EeccchhHHHhhhcccccccceecccccccCCcccc-------ccCcCCcccCceEEeeccCCcceEEeccccc------
Q 041843 578 TFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIG-------VADLADLEQLNTLYFRSCDWIKGLKIDYKDM------ 644 (800)
Q Consensus 578 ~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~-------~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~------ 644 (800)
+.|.+..........-....++.|.+.++....... ...+..+++|++|++++|......+..+...
T Consensus 162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L 241 (455)
T 3v47_A 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241 (455)
T ss_dssp TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred CCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence 999876542211111111356666666654322111 0123345678888888876543222111110
Q ss_pred --------------------c---ccCCCCcCCCCccEEeeecCCCCCCCh-hhhcCCCCcEEEEecCcchhHhhccCCC
Q 041843 645 --------------------V---QKSRQPCVFRSLEEVTVDNCGNLKHLT-FLVFAPNLKSISVRDCDDMEEIISAGEF 700 (800)
Q Consensus 645 --------------------~---~l~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~ 700 (800)
. .........++|+.|++++|.-...++ .+..+++|++|++++|.. ..+..
T Consensus 242 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~---- 316 (455)
T 3v47_A 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDD---- 316 (455)
T ss_dssp EEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-CEECT----
T ss_pred eeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc-cccCh----
Confidence 0 000001123688889988874333233 477889999999988762 22211
Q ss_pred CCcCcccCccCCcCCcccEeeccCccccccc-CCCCCCCCCcceEeecCC-------------CCCCCCCCCCCCCCCcc
Q 041843 701 DDIPEMTGIISSPFAKLQHLQLGGLGRLKSI-YWKPLPLPRLKELTVVDC-------------DSLEKLPLDSNSANGRR 766 (800)
Q Consensus 701 ~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c-------------~~L~~L~~~~n~~~l~~ 766 (800)
.....+++|+.|++.++ .+..+ +.....+++|+.|++++| ++|+.|.+++|.+....
T Consensus 317 --------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 317 --------NAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp --------TTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred --------hHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence 24456789999999986 44444 334567889999988863 44444444444433211
Q ss_pred eEEEeehhccccceecchhhhhh
Q 041843 767 ILIRGDEDWWRRLQWEDEATQNA 789 (800)
Q Consensus 767 ~~i~~~~~~~~~l~~~~~~~~~~ 789 (800)
..+.+....++.|+..+|.+...
T Consensus 388 ~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 388 DGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCC
T ss_pred HhHhccCCcccEEEccCCCcccC
Confidence 11112223345566666655543
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=4.2e-22 Score=210.11 Aligned_cols=294 Identities=16% Similarity=0.116 Sum_probs=215.8
Q ss_pred ccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccc-ccccccccccccEEecc
Q 041843 419 EMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQ-LPTGISKLVSLQLLDIS 497 (800)
Q Consensus 419 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~-lp~~i~~L~~L~~L~L~ 497 (800)
.+++.++++++.+..+|... .++|++|++++|.+..+++..|..+++|++|++++| .+.. .|..++++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence 36889999999999988533 479999999999999998878999999999999999 5555 48889999999999999
Q ss_pred CCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEE
Q 041843 498 YTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEI 577 (800)
Q Consensus 498 ~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 577 (800)
+|.++.+|..+. ++|++|++++|. +..+|...+.++++|++|++.+|.+.... ..+..+..+ +|+.|++
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSG-------FEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGG-------SCTTSSCSC-CCSCCBC
T ss_pred CCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCC-------CCcccccCC-ccCEEEC
Confidence 999999998766 899999999875 57788777899999999999999875311 234456666 8999999
Q ss_pred EeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCc
Q 041843 578 TFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSL 657 (800)
Q Consensus 578 ~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L 657 (800)
+.|.+..++.. +...++.|.+.++... ......+..+++|+.|++++|..... +... ...+++|
T Consensus 180 ~~n~l~~l~~~-----~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~---------~~~l~~L 243 (332)
T 2ft3_A 180 SEAKLTGIPKD-----LPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMI-ENGS---------LSFLPTL 243 (332)
T ss_dssp CSSBCSSCCSS-----SCSSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCCC-CTTG---------GGGCTTC
T ss_pred cCCCCCccCcc-----ccCCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCcC-ChhH---------hhCCCCC
Confidence 99988765432 2258888999887543 33335688899999999999875442 2211 1257899
Q ss_pred cEEeeecCCCCCCCh-hhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcccc--cccCCC
Q 041843 658 EEVTVDNCGNLKHLT-FLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRL--KSIYWK 734 (800)
Q Consensus 658 ~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l--~~~~~~ 734 (800)
+.|++++| .++.++ .+..+++|++|+++++. ++.+....... . .....++.|+.|.+.+.+.. ...+..
T Consensus 244 ~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~-~-----~~~~~~~~l~~L~l~~N~~~~~~~~~~~ 315 (332)
T 2ft3_A 244 RELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCP-V-----GFGVKRAYYNGISLFNNPVPYWEVQPAT 315 (332)
T ss_dssp CEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSC-S-----SCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred CEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCccChhHccc-c-----ccccccccccceEeecCcccccccCccc
Confidence 99999998 566665 48899999999999875 44332211000 0 01123678999999986532 112222
Q ss_pred CCCCCCcceEeecCC
Q 041843 735 PLPLPRLKELTVVDC 749 (800)
Q Consensus 735 ~~~~~~L~~L~l~~c 749 (800)
...+++|+.+++.++
T Consensus 316 ~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNY 330 (332)
T ss_dssp GTTBCCSTTEEC---
T ss_pred ccccchhhhhhcccc
Confidence 334556666666554
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3e-22 Score=228.49 Aligned_cols=293 Identities=20% Similarity=0.218 Sum_probs=133.9
Q ss_pred EEEcCCCccccCcc-ccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccc
Q 041843 401 LVYAGSGLTEAPAD-VRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM 477 (800)
Q Consensus 401 ~~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~ 477 (800)
+...+..+..+|+. +..+++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|+.+++|++|+|++| .
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 134 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-D 134 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-C
Confidence 33334444444333 233444455555555444443 2444455555555555544444444444555555555554 3
Q ss_pred ccccccc-ccccccccEEeccCCCCcccch-hhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcc
Q 041843 478 LRQLPTG-ISKLVSLQLLDISYTSVTGLPE-GLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRF 555 (800)
Q Consensus 478 ~~~lp~~-i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~ 555 (800)
+..+|.. ++++++|++|+|++|.++.+|. .++.+++|++|++++|. +..++ ++.+++|++|++++|.+..
T Consensus 135 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~l~~---- 206 (597)
T 3oja_B 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLLST---- 206 (597)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSCCSE----
T ss_pred CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCcccc----
Confidence 3344433 2444555555555554444322 34444555555554442 23332 2334444444444443321
Q ss_pred cccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcc
Q 041843 556 SSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIK 635 (800)
Q Consensus 556 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 635 (800)
+....+|+.|+++.|.+..++.. ....++.|.+.++.... +..+..+++|+.|++++|....
T Consensus 207 ----------l~~~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 207 ----------LAIPIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp ----------EECCTTCSEEECCSSCCCEEECS-----CCSCCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCE
T ss_pred ----------ccCCchhheeeccCCcccccccc-----cCCCCCEEECCCCCCCC---ChhhccCCCCCEEECCCCccCC
Confidence 12233455555555544332211 11345555555554322 1335556666666666665443
Q ss_pred eEEeccccccccCCCCcCCCCccEEeeecCCCCCCChh-hhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcC
Q 041843 636 GLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTF-LVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPF 714 (800)
Q Consensus 636 ~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~ 714 (800)
..+..+. .+++|+.|++++| .++.++. ...+|+|+.|+|++|.. ..++. ....+
T Consensus 269 ~~~~~~~----------~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l-~~i~~-------------~~~~l 323 (597)
T 3oja_B 269 IMYHPFV----------KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHL-LHVER-------------NQPQF 323 (597)
T ss_dssp EESGGGT----------TCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCC-CCCGG-------------GHHHH
T ss_pred CCHHHhc----------CccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCC-CccCc-------------ccccC
Confidence 2222222 3456666666665 3444332 33456666666666541 11111 12345
Q ss_pred CcccEeeccCcccccccCCCCCCCCCcceEeecC
Q 041843 715 AKLQHLQLGGLGRLKSIYWKPLPLPRLKELTVVD 748 (800)
Q Consensus 715 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 748 (800)
++|+.|++.++. +..++ ...+++|+.|++++
T Consensus 324 ~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 324 DRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSH 354 (597)
T ss_dssp TTCSEEECCSSC-CCCCC--CCTTCCCSEEECCS
T ss_pred CCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeC
Confidence 566666666542 33332 34455666666655
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=2.2e-21 Score=220.23 Aligned_cols=148 Identities=19% Similarity=0.251 Sum_probs=124.1
Q ss_pred cceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc-cccccccccccEEeccC
Q 041843 420 MGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQLLDISY 498 (800)
Q Consensus 420 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~ 498 (800)
..+.++++++.+..+|... .++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..+.++++|++|++++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCC
Confidence 3478999999999998632 289999999999999999888999999999999999 55555 78899999999999999
Q ss_pred CCCcccchhhhcCccCceecccccccccccch-hhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEE
Q 041843 499 TSVTGLPEGLKALVNLKCLNLDWADELVEVPQ-QLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEI 577 (800)
Q Consensus 499 ~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 577 (800)
|.++.+|.. .+++|++|++++|. +..+|. ..++++++|++|++++|.+.. .....+..+ +|+.|++
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---------~~~~~l~~L-~L~~L~L 176 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---------LDLLPVAHL-HLSCILL 176 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---------TTTGGGTTS-CEEEEEE
T ss_pred CcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---------Cchhhhhhc-eeeEEEe
Confidence 999999987 89999999999886 455542 348999999999999998764 233344444 4599999
Q ss_pred Eeccc
Q 041843 578 TFRSF 582 (800)
Q Consensus 578 ~~~~~ 582 (800)
+.|.+
T Consensus 177 ~~n~l 181 (562)
T 3a79_B 177 DLVSY 181 (562)
T ss_dssp EESSC
T ss_pred ecccc
Confidence 99876
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=4.1e-22 Score=227.42 Aligned_cols=301 Identities=15% Similarity=0.195 Sum_probs=233.3
Q ss_pred ccccceEEEccccccCCCCC--CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc-cccccccccccE
Q 041843 417 GWEMGRRLSLMKNSIGNLPT--VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQL 493 (800)
Q Consensus 417 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~ 493 (800)
.+.+++.+++.++.+..+|. +..+++|++|++++|.+..+++..|..+++|++|+|++| .+..+ |..++++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCE
Confidence 45688999999999999986 678999999999999999999888999999999999999 55555 456799999999
Q ss_pred EeccCCCCcccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCC
Q 041843 494 LDISYTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYL 572 (800)
Q Consensus 494 L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L 572 (800)
|+|++|.++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+.. . .++.+++|
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~---------~---~~~~l~~L 194 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH---------V---DLSLIPSL 194 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB---------C---CGGGCTTC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC---------c---Chhhhhhh
Confidence 99999999999887 4899999999999886 466666668999999999999998764 1 25668899
Q ss_pred cEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCc
Q 041843 573 EVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPC 652 (800)
Q Consensus 573 ~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~ 652 (800)
+.|+++.|.+..+ .....++.|.+.++.... .+. ...++|+.|++++|.... +.. ..
T Consensus 195 ~~L~l~~n~l~~l-------~~~~~L~~L~ls~n~l~~-~~~---~~~~~L~~L~L~~n~l~~--~~~----------l~ 251 (597)
T 3oja_B 195 FHANVSYNLLSTL-------AIPIAVEELDASHNSINV-VRG---PVNVELTILKLQHNNLTD--TAW----------LL 251 (597)
T ss_dssp SEEECCSSCCSEE-------ECCTTCSEEECCSSCCCE-EEC---SCCSCCCEEECCSSCCCC--CGG----------GG
T ss_pred hhhhcccCccccc-------cCCchhheeeccCCcccc-ccc---ccCCCCCEEECCCCCCCC--Chh----------hc
Confidence 9999998877643 233468888888775422 221 123689999999987654 111 23
Q ss_pred CCCCccEEeeecCCCCCCC--hhhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcccccc
Q 041843 653 VFRSLEEVTVDNCGNLKHL--TFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLKS 730 (800)
Q Consensus 653 ~~~~L~~L~l~~c~~l~~l--~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~ 730 (800)
.+++|+.|++++|. +..+ ..+..+++|+.|+|++|. +..++ .....+|+|+.|+++++ .+..
T Consensus 252 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~-------------~~~~~l~~L~~L~Ls~N-~l~~ 315 (597)
T 3oja_B 252 NYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNR-LVALN-------------LYGQPIPTLKVLDLSHN-HLLH 315 (597)
T ss_dssp GCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSC-CCEEE-------------CSSSCCTTCCEEECCSS-CCCC
T ss_pred cCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCC-CCCCC-------------cccccCCCCcEEECCCC-CCCc
Confidence 57899999999984 4443 357889999999999875 33221 23356899999999986 5666
Q ss_pred cCCCCCCCCCcceEeecCCCCCCCCCCCCCCCCCcceEEEee
Q 041843 731 IYWKPLPLPRLKELTVVDCDSLEKLPLDSNSANGRRILIRGD 772 (800)
Q Consensus 731 ~~~~~~~~~~L~~L~l~~c~~L~~L~~~~n~~~l~~~~i~~~ 772 (800)
++.....+++|+.|++++| ++..+|+... ..+..+.+.++
T Consensus 316 i~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~L~~L~l~~N 355 (597)
T 3oja_B 316 VERNQPQFDRLENLYLDHN-SIVTLKLSTH-HTLKNLTLSHN 355 (597)
T ss_dssp CGGGHHHHTTCSEEECCSS-CCCCCCCCTT-CCCSEEECCSS
T ss_pred cCcccccCCCCCEEECCCC-CCCCcChhhc-CCCCEEEeeCC
Confidence 6665667899999999996 5777776543 45666666654
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=7.1e-22 Score=224.14 Aligned_cols=150 Identities=19% Similarity=0.194 Sum_probs=116.4
Q ss_pred ccEEEEcCCCccccC-ccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccC
Q 041843 398 EGFLVYAGSGLTEAP-ADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSD 474 (800)
Q Consensus 398 ~~~~~~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~ 474 (800)
-+.+...+..+..++ ..+..++++++|++++|.+..++ .+.++++|++|++++|.+..+++..|..+++|++|++++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 345666666676664 46788889999999999987776 388899999999999999888888788999999999999
Q ss_pred ccccc--cccccccccccccEEeccCCC-Ccccc-hhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCC
Q 041843 475 NIMLR--QLPTGISKLVSLQLLDISYTS-VTGLP-EGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGV 549 (800)
Q Consensus 475 ~~~~~--~lp~~i~~L~~L~~L~L~~~~-i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~ 549 (800)
| .+. ..|..++++++|++|++++|. +..+| ..++.+++|++|++++|......|.. ++++++|++|++..|..
T Consensus 108 n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 108 N-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSES 184 (549)
T ss_dssp C-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBS
T ss_pred C-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCcc
Confidence 8 555 346778889999999999886 66676 46888889999999887654445544 67777777777666654
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=4.9e-21 Score=227.47 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=131.3
Q ss_pred eEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc-cccccccccccEEeccCCC
Q 041843 422 RRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQLLDISYTS 500 (800)
Q Consensus 422 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~~ 500 (800)
+..+.+++.+..+|. -.++|++|++++|.++.+++..|.++++|++|++++|..+..+ |..|+++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 456777888899998 5689999999999999998888999999999999999666666 7889999999999999999
Q ss_pred Cccc-chhhhcCccCceecccccccccccch-hhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEE
Q 041843 501 VTGL-PEGLKALVNLKCLNLDWADELVEVPQ-QLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEIT 578 (800)
Q Consensus 501 i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 578 (800)
+..+ |..++++++|++|++++|.....+|. ..++++++|++|++++|.+... .....++++++|+.|+++
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~--------~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL--------YLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC--------CCCGGGGTCSSCCEEEEE
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc--------ccchhHhhCCCCCEEECC
Confidence 9986 88899999999999999875444444 3478999999999999988652 233578999999999999
Q ss_pred eccchh
Q 041843 579 FRSFEA 584 (800)
Q Consensus 579 ~~~~~~ 584 (800)
.|.+..
T Consensus 157 ~N~i~~ 162 (844)
T 3j0a_A 157 SNQIFL 162 (844)
T ss_dssp SSCCCC
T ss_pred CCcCCe
Confidence 988754
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.5e-21 Score=204.73 Aligned_cols=204 Identities=22% Similarity=0.379 Sum_probs=130.4
Q ss_pred CcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccCCCCcccchhhhcCccCceeccc
Q 041843 441 PHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLD 520 (800)
Q Consensus 441 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~ 520 (800)
.+++.|++++|.++.+|+. +..+++|++|++++| .+..+|..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 5667777777777766665 445777777777777 55577777777777777777777777777777777777777777
Q ss_pred ccccccccchhh--------hCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcc
Q 041843 521 WADELVEVPQQL--------LSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQ 592 (800)
Q Consensus 521 ~~~~l~~lp~~~--------~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 592 (800)
+|+..+.+|..+ ++++++|++|++++|.+. ..+..++++++|+.|+++.|.+..++.
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----------~lp~~l~~l~~L~~L~L~~N~l~~l~~----- 223 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR----------SLPASIANLQNLKSLKIRNSPLSALGP----- 223 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC----------CCCGGGGGCTTCCEEEEESSCCCCCCG-----
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC----------cchHhhcCCCCCCEEEccCCCCCcCch-----
Confidence 777677777652 223777888888777665 244557777777777777776543221
Q ss_pred cccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCCh
Q 041843 593 KLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLT 672 (800)
Q Consensus 593 ~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 672 (800)
.+..+++|++|++++|.....++..+. .+++|+.|++++|.....++
T Consensus 224 -----------------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~----------~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 224 -----------------------AIHHLPKLEELDLRGCTALRNYPPIFG----------GRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp -----------------------GGGGCTTCCEEECTTCTTCCBCCCCTT----------CCCCCCEEECTTCTTCCBCC
T ss_pred -----------------------hhccCCCCCEEECcCCcchhhhHHHhc----------CCCCCCEEECCCCCchhhcc
Confidence 234455666666666555544333222 34566666666665555444
Q ss_pred -hhhcCCCCcEEEEecCcchhHh
Q 041843 673 -FLVFAPNLKSISVRDCDDMEEI 694 (800)
Q Consensus 673 -~l~~l~~L~~L~l~~~~~l~~i 694 (800)
.+..+++|++|+|++|+.++.+
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCC
T ss_pred hhhhcCCCCCEEeCCCCCchhhc
Confidence 3556666666666666544433
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=4.2e-21 Score=202.25 Aligned_cols=272 Identities=18% Similarity=0.180 Sum_probs=199.0
Q ss_pred ccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc-cccccccccccEEecc
Q 041843 419 EMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQLLDIS 497 (800)
Q Consensus 419 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~ 497 (800)
.+++.++++++.+..+|... .++|++|++++|.++.+++..|..+++|++|++++| .+..+ |..++++++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECC
Confidence 36788999988888888522 378999999999999998877899999999999999 55554 8889999999999999
Q ss_pred CCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEE
Q 041843 498 YTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEI 577 (800)
Q Consensus 498 ~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 577 (800)
+|.++.+|..+. ++|++|++++|. +..++...+.++++|++|++++|.+.... ..+..+.++++|+.|++
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSG-------IENGAFQGMKKLSYIRI 178 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGG-------BCTTGGGGCTTCCEEEC
T ss_pred CCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccC-------cChhhccCCCCcCEEEC
Confidence 999999987765 799999999875 56777777899999999999998775321 34566788999999999
Q ss_pred EeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCc
Q 041843 578 TFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSL 657 (800)
Q Consensus 578 ~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L 657 (800)
+.|.+..++.. ....++.|.+.++.. ....+..+..+++|+.|++++|.... ++.... ..+++|
T Consensus 179 ~~n~l~~l~~~-----~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~---------~~l~~L 242 (330)
T 1xku_A 179 ADTNITTIPQG-----LPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISA-VDNGSL---------ANTPHL 242 (330)
T ss_dssp CSSCCCSCCSS-----CCTTCSEEECTTSCC-CEECTGGGTTCTTCCEEECCSSCCCE-ECTTTG---------GGSTTC
T ss_pred CCCccccCCcc-----ccccCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCcCce-eChhhc---------cCCCCC
Confidence 98887754432 125778888877653 33333567788889999998887543 222111 246888
Q ss_pred cEEeeecCCCCCCCh-hhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcc
Q 041843 658 EEVTVDNCGNLKHLT-FLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLG 726 (800)
Q Consensus 658 ~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 726 (800)
+.|++++| .++.++ .+..+++|++|++++|. ++.+........ .....++.|+.|.+.+.+
T Consensus 243 ~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~------~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 243 RELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPP------GYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCS------SCCTTSCCCSEEECCSSS
T ss_pred CEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCc------ccccccccccceEeecCc
Confidence 99999888 455654 47788889999888875 333322111000 011235677788887744
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=207.21 Aligned_cols=175 Identities=22% Similarity=0.296 Sum_probs=126.8
Q ss_pred EEEEcCCCccccCccccccccceEEEccccccCCCCC--CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccc
Q 041843 400 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPT--VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM 477 (800)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~ 477 (800)
.+...+..+.++|..+. ++++.|++++|.+..++. +.++++|++|++++|.++.+++..|.++++|++|++++| .
T Consensus 35 ~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-Y 111 (353)
T ss_dssp EEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-c
Confidence 34455566777766554 477888888888777664 777788888888888877777766777888888888887 5
Q ss_pred ccccccc-ccccccccEEeccCCCCcccch--hhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCc
Q 041843 478 LRQLPTG-ISKLVSLQLLDISYTSVTGLPE--GLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGR 554 (800)
Q Consensus 478 ~~~lp~~-i~~L~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~ 554 (800)
+..+|.. ++++++|++|++++|.++.+|. .+..+++|++|++++|..+..+++..++++++|++|++++|.+..
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--- 188 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--- 188 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc---
Confidence 6666655 6778888888888887777776 577788888888887755666665557778888888888777654
Q ss_pred ccccccchHHHhhCCCCCcEEEEEeccchhHH
Q 041843 555 FSSRYVNVAEELLGLKYLEVLEITFRSFEAYQ 586 (800)
Q Consensus 555 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 586 (800)
..+..+..+++|+.|+++.|.+..++
T Consensus 189 ------~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 189 ------YEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp ------ECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred ------cCHHHHhccccCCeecCCCCccccch
Confidence 34566777777888888777765544
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.1e-21 Score=204.56 Aligned_cols=221 Identities=17% Similarity=0.209 Sum_probs=128.0
Q ss_pred cceEEEccccccC---CCC-CCCCCCcceEEEeec-CCCcccccccccCCCCCcEEEccCccccccccccccccccccEE
Q 041843 420 MGRRLSLMKNSIG---NLP-TVPTCPHLLTLFLND-NPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLL 494 (800)
Q Consensus 420 ~l~~l~l~~~~~~---~l~-~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L 494 (800)
+++.|+++++.+. .+| .+.++++|++|++++ |.+.+..+..|..+++|++|++++|.....+|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 5666666666664 244 356666666666663 55554434445666666666666663333566666666666666
Q ss_pred eccCCCCc-ccchhhhcCccCceecccccccccccchhhhCCCC-CCcEEEeeecCCCCCCcccccccchHHHhhCCCCC
Q 041843 495 DISYTSVT-GLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFS-RLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYL 572 (800)
Q Consensus 495 ~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L 572 (800)
++++|.++ .+|..++.+++|++|++++|.....+|.. +++++ +|++|++++|.+.. ..+..+..++ |
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~---------~~~~~~~~l~-L 199 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG---------KIPPTFANLN-L 199 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE---------ECCGGGGGCC-C
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec---------cCChHHhCCc-c
Confidence 66666666 35666666666666666666543355554 55565 66666666665543 3344455554 6
Q ss_pred cEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCc
Q 041843 573 EVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPC 652 (800)
Q Consensus 573 ~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~ 652 (800)
+.|+++.|.+... .+..+..+++|+.|++++|......+ . ..
T Consensus 200 ~~L~Ls~N~l~~~---------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~-~----------~~ 241 (313)
T 1ogq_A 200 AFVDLSRNMLEGD---------------------------ASVLFGSDKNTQKIHLAKNSLAFDLG-K----------VG 241 (313)
T ss_dssp SEEECCSSEEEEC---------------------------CGGGCCTTSCCSEEECCSSEECCBGG-G----------CC
T ss_pred cEEECcCCcccCc---------------------------CCHHHhcCCCCCEEECCCCceeeecC-c----------cc
Confidence 6666655543321 11345667778888887775432111 1 12
Q ss_pred CCCCccEEeeecCCCCCCCh-hhhcCCCCcEEEEecCc
Q 041843 653 VFRSLEEVTVDNCGNLKHLT-FLVFAPNLKSISVRDCD 689 (800)
Q Consensus 653 ~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~~~ 689 (800)
.+++|++|++++|.-...++ .+..+++|++|++++|.
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 35777777777764321333 46667777777777765
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=2.6e-21 Score=201.71 Aligned_cols=255 Identities=15% Similarity=0.164 Sum_probs=196.3
Q ss_pred CcceEEEeecCCCcc--cccccccCCCCCcEEEccC-ccccccccccccccccccEEeccCCCCc-ccchhhhcCccCce
Q 041843 441 PHLLTLFLNDNPLRT--ITGGFFQSMPCLTVLKMSD-NIMLRQLPTGISKLVSLQLLDISYTSVT-GLPEGLKALVNLKC 516 (800)
Q Consensus 441 ~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~Ls~-~~~~~~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~l~~L~~ 516 (800)
.+++.|++++|.+.+ ..+..|..+++|++|++++ |.....+|..++++++|++|++++|.++ .+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 689999999999986 4444589999999999995 6455689999999999999999999998 58999999999999
Q ss_pred ecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCC-CCcEEEEEeccchhHHHhhhccccc
Q 041843 517 LNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLK-YLEVLEITFRSFEAYQTFLSSQKLR 595 (800)
Q Consensus 517 L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~ 595 (800)
|++++|.....+|.. ++++++|++|++++|.+.. ..+..+..++ +|+.|+++.|.+....
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~---------~~p~~l~~l~~~L~~L~L~~N~l~~~~--------- 190 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISG---------AIPDSYGSFSKLFTSMTISRNRLTGKI--------- 190 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEE---------ECCGGGGCCCTTCCEEECCSSEEEEEC---------
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCcccC---------cCCHHHhhhhhcCcEEECcCCeeeccC---------
Confidence 999988765577776 8999999999999998764 5677888887 9999999887654210
Q ss_pred ccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCChhhh
Q 041843 596 SCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTFLV 675 (800)
Q Consensus 596 ~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~l~ 675 (800)
+..+..++ |+.|++++|......+..+ ..+++|+.|+++++.-...++.+.
T Consensus 191 ------------------~~~~~~l~-L~~L~Ls~N~l~~~~~~~~----------~~l~~L~~L~L~~N~l~~~~~~~~ 241 (313)
T 1ogq_A 191 ------------------PPTFANLN-LAFVDLSRNMLEGDASVLF----------GSDKNTQKIHLAKNSLAFDLGKVG 241 (313)
T ss_dssp ------------------CGGGGGCC-CSEEECCSSEEEECCGGGC----------CTTSCCSEEECCSSEECCBGGGCC
T ss_pred ------------------ChHHhCCc-ccEEECcCCcccCcCCHHH----------hcCCCCCEEECCCCceeeecCccc
Confidence 12344455 9999999987544322222 357899999999985444566678
Q ss_pred cCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcccccccCCCCCCCCCcceEeecCCCCCCCC
Q 041843 676 FAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLKSIYWKPLPLPRLKELTVVDCDSLEKL 755 (800)
Q Consensus 676 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~L~~L 755 (800)
.+++|++|++++|.....++ .....+++|+.|++.++.--..++.. ..+++|+.+++.+.+.|...
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~p-------------~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTLP-------------QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CCTTCCEEECCSSCCEECCC-------------GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred ccCCCCEEECcCCcccCcCC-------------hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 89999999999986322221 23456889999999986443355554 66788888888887767665
Q ss_pred CC
Q 041843 756 PL 757 (800)
Q Consensus 756 ~~ 757 (800)
|+
T Consensus 308 p~ 309 (313)
T 1ogq_A 308 PL 309 (313)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=3.5e-20 Score=214.37 Aligned_cols=148 Identities=25% Similarity=0.294 Sum_probs=127.3
Q ss_pred EEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccc
Q 041843 400 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM 477 (800)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~ 477 (800)
.+.+.+.++.++|..+. .++++|++++|.+..++ .|.++++|++|+|++|.++.++++.|.++++|++|+|++| .
T Consensus 35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-P 111 (635)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-c
Confidence 34556678889987765 57999999999999988 4899999999999999999999988999999999999999 6
Q ss_pred cccccc-cccccccccEEeccCCCCcccch-hhhcCccCceeccccccccc-ccchhhhCCCCCCcEEEeeecCCCC
Q 041843 478 LRQLPT-GISKLVSLQLLDISYTSVTGLPE-GLKALVNLKCLNLDWADELV-EVPQQLLSNFSRLRVLRMFATGVGS 551 (800)
Q Consensus 478 ~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~-~lp~~~~~~L~~L~~L~l~~~~~~~ 551 (800)
+..+|. .|.++.+|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+..
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccc
Confidence 777764 58999999999999999999876 48999999999999886422 34554 7899999999999998754
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=9.7e-21 Score=208.60 Aligned_cols=239 Identities=23% Similarity=0.295 Sum_probs=189.0
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
..+...+.++..+|..+. .+++.|++++|.+..++ .+.++++|++|++++|.+..+++..|.++++|++|+|++|
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n- 133 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN- 133 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-
Confidence 345667778888887665 68999999999998775 5889999999999999999999888999999999999999
Q ss_pred ccccccc-cccccccccEEeccCCCCcccch-hhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCc
Q 041843 477 MLRQLPT-GISKLVSLQLLDISYTSVTGLPE-GLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGR 554 (800)
Q Consensus 477 ~~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~ 554 (800)
.+..+|. .+.++++|++|+|++|.++.+|. .+.++++|++|++++|+.+..+|...+.++++|++|++++|.+...
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-- 211 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-- 211 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--
Confidence 6667665 48889999999999999999876 6889999999999998888999988889999999999999987642
Q ss_pred ccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCc
Q 041843 555 FSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWI 634 (800)
Q Consensus 555 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 634 (800)
..+..+++|+.|+++.|.+..+. +..+..+++|+.|++++|...
T Consensus 212 ---------~~~~~l~~L~~L~Ls~N~l~~~~---------------------------~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 212 ---------PNLTPLVGLEELEMSGNHFPEIR---------------------------PGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp ---------CCCTTCTTCCEEECTTSCCSEEC---------------------------GGGGTTCTTCCEEECTTSCCC
T ss_pred ---------ccccccccccEEECcCCcCcccC---------------------------cccccCccCCCEEEeCCCcCc
Confidence 24677888999998887665421 134667778888888887654
Q ss_pred ceEEeccccccccCCCCcCCCCccEEeeecCCCCCCChh--hhcCCCCcEEEEecCc
Q 041843 635 KGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTF--LVFAPNLKSISVRDCD 689 (800)
Q Consensus 635 ~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~~~ 689 (800)
...+..+ ..+++|+.|+++++ .++.++. +..+++|+.|+|++++
T Consensus 256 ~~~~~~~----------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 256 LIERNAF----------DGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECTTTT----------TTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred eECHHHh----------cCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 3212112 24678888888887 5565543 5677888888888765
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=9.3e-21 Score=207.99 Aligned_cols=238 Identities=22% Similarity=0.294 Sum_probs=190.4
Q ss_pred EEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccc
Q 041843 400 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM 477 (800)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~ 477 (800)
.+...+..+..+|..+. .+++.|++++|.+..++ .+.++++|++|++++|.+..+++..|.++++|++|+|++| .
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~ 123 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-R 123 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-C
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-c
Confidence 45666778888887665 68899999999998776 5889999999999999999999888999999999999999 6
Q ss_pred cccccc-cccccccccEEeccCCCCcccch-hhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcc
Q 041843 478 LRQLPT-GISKLVSLQLLDISYTSVTGLPE-GLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRF 555 (800)
Q Consensus 478 ~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~ 555 (800)
+..+|. .+..+++|++|+|++|.++.+|. .+..+++|++|++++|+.+..++...+.++++|++|++++|.+...
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--- 200 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--- 200 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC---
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc---
Confidence 777765 68899999999999999999775 6889999999999998888899887789999999999999987632
Q ss_pred cccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcc
Q 041843 556 SSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIK 635 (800)
Q Consensus 556 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 635 (800)
..+..+++|+.|+++.|.+..+ ....+..+++|+.|++++|....
T Consensus 201 --------~~~~~l~~L~~L~Ls~N~l~~~---------------------------~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 201 --------PNLTPLIKLDELDLSGNHLSAI---------------------------RPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp --------CCCTTCSSCCEEECTTSCCCEE---------------------------CTTTTTTCTTCCEEECTTCCCCE
T ss_pred --------cccCCCcccCEEECCCCccCcc---------------------------ChhhhccCccCCEEECCCCceeE
Confidence 2467788889998887765432 12456778888888888876543
Q ss_pred eEEeccccccccCCCCcCCCCccEEeeecCCCCCCChh--hhcCCCCcEEEEecCc
Q 041843 636 GLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTF--LVFAPNLKSISVRDCD 689 (800)
Q Consensus 636 ~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~~~ 689 (800)
++... ...+++|+.|+|+++ .++.++. +..+++|+.|+|++++
T Consensus 246 -~~~~~---------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 246 -IERNA---------FDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -ECTTS---------STTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -EChhh---------hcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 22221 124688888888887 5666553 5678888888888765
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1e-20 Score=198.33 Aligned_cols=219 Identities=24% Similarity=0.370 Sum_probs=166.1
Q ss_pred ccceEEEccccccCCCCC-CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEecc
Q 041843 419 EMGRRLSLMKNSIGNLPT-VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDIS 497 (800)
Q Consensus 419 ~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~ 497 (800)
..++.|++++|.+..+|. +.++++|++|++++|.+..+|.. +..+++|++|++++| .+..+|..++++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence 467788888888887774 66788888888888888876654 678888888888888 666888888888888888888
Q ss_pred CCC-Ccccchhhhc---------CccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhh
Q 041843 498 YTS-VTGLPEGLKA---------LVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELL 567 (800)
Q Consensus 498 ~~~-i~~lp~~i~~---------l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 567 (800)
+|. +..+|..++. +++|++|++++|. +..+|.. ++++++|++|++++|.+.. .+..+.
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~-l~~l~~L~~L~L~~N~l~~----------l~~~l~ 226 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPAS-IANLQNLKSLKIRNSPLSA----------LGPAIH 226 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGG-GGGCTTCCEEEEESSCCCC----------CCGGGG
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHh-hcCCCCCCEEEccCCCCCc----------Cchhhc
Confidence 864 4457776654 8888888888775 4577776 7888888888888887763 444677
Q ss_pred CCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEecccccccc
Q 041843 568 GLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQK 647 (800)
Q Consensus 568 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l 647 (800)
.+++|+.|++++|.+.. .. +..+..+++|+.|++++|.....+|..+.
T Consensus 227 ~l~~L~~L~Ls~n~~~~--------------------------~~-p~~~~~l~~L~~L~L~~n~~~~~~p~~~~----- 274 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALR--------------------------NY-PPIFGGRAPLKRLILKDCSNLLTLPLDIH----- 274 (328)
T ss_dssp GCTTCCEEECTTCTTCC--------------------------BC-CCCTTCCCCCCEEECTTCTTCCBCCTTGG-----
T ss_pred cCCCCCEEECcCCcchh--------------------------hh-HHHhcCCCCCCEEECCCCCchhhcchhhh-----
Confidence 88888888887665432 11 13467788899999999887776655443
Q ss_pred CCCCcCCCCccEEeeecCCCCCCCh-hhhcCCCCcEEEEecC
Q 041843 648 SRQPCVFRSLEEVTVDNCGNLKHLT-FLVFAPNLKSISVRDC 688 (800)
Q Consensus 648 ~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~~ 688 (800)
.+++|+.|++++|..+..+| .+..+++|+.+++...
T Consensus 275 -----~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 275 -----RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp -----GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred -----cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 47899999999988777776 4889999999988753
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=192.09 Aligned_cols=269 Identities=21% Similarity=0.253 Sum_probs=191.4
Q ss_pred eEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc-cccccccccccEEeccCCC
Q 041843 422 RRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQLLDISYTS 500 (800)
Q Consensus 422 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~~ 500 (800)
...+.+++.+..+|.. -.++|++|++++|.++.+++..|..+++|++|++++| .+..+ |..++++++|++|++++|.
T Consensus 34 ~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc
Confidence 3477888999998862 2369999999999999999878999999999999999 55555 6679999999999999999
Q ss_pred Ccccchh-hhcCccCceecccccccccccch-hhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEE
Q 041843 501 VTGLPEG-LKALVNLKCLNLDWADELVEVPQ-QLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEIT 578 (800)
Q Consensus 501 i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 578 (800)
++.+|.. ++.+++|++|++++|. +..+|. ..++++++|++|++++|..... ..+..+.++++|+.|+++
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~--------~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTK--------IQRKDFAGLTFLEELEID 182 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCE--------ECTTTTTTCCEEEEEEEE
T ss_pred CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccc--------cCHHHccCCCCCCEEECC
Confidence 9999877 8999999999999885 577887 5589999999999999853221 345678889999999999
Q ss_pred eccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCcc
Q 041843 579 FRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLE 658 (800)
Q Consensus 579 ~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~ 658 (800)
.|.+.... +..+..+++|++|++++|... .++..+.. .+++|+
T Consensus 183 ~n~l~~~~---------------------------~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~---------~~~~L~ 225 (353)
T 2z80_A 183 ASDLQSYE---------------------------PKSLKSIQNVSHLILHMKQHI-LLLEIFVD---------VTSSVE 225 (353)
T ss_dssp ETTCCEEC---------------------------TTTTTTCSEEEEEEEECSCST-THHHHHHH---------HTTTEE
T ss_pred CCCcCccC---------------------------HHHHhccccCCeecCCCCccc-cchhhhhh---------hccccc
Confidence 88765321 134666778888888887642 22222211 357888
Q ss_pred EEeeecCCCCCCCh-----hhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcccccccCC
Q 041843 659 EVTVDNCGNLKHLT-----FLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLKSIYW 733 (800)
Q Consensus 659 ~L~l~~c~~l~~l~-----~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~ 733 (800)
.|+++++. ++.++ .....+.++.++++++.--..-.. .++ .....+++|+.|+++++ .+..++.
T Consensus 226 ~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~-----~l~----~~l~~l~~L~~L~Ls~N-~l~~i~~ 294 (353)
T 2z80_A 226 CLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-----QVM----KLLNQISGLLELEFSRN-QLKSVPD 294 (353)
T ss_dssp EEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHH-----HHH----HHHHTCTTCCEEECCSS-CCCCCCT
T ss_pred EEECCCCc-cccccccccccccccchhhccccccccccCcchh-----hhH----HHHhcccCCCEEECCCC-CCCccCH
Confidence 88888773 33322 233466777788877642111000 000 12345778888888875 5666655
Q ss_pred CC-CCCCCcceEeecCC
Q 041843 734 KP-LPLPRLKELTVVDC 749 (800)
Q Consensus 734 ~~-~~~~~L~~L~l~~c 749 (800)
.. ..+++|+.|+++++
T Consensus 295 ~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 295 GIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred HHHhcCCCCCEEEeeCC
Confidence 43 45566666666554
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=1.5e-19 Score=209.18 Aligned_cols=125 Identities=24% Similarity=0.313 Sum_probs=111.1
Q ss_pred ccEEEEcCCCccccCc-cccccccceEEEccccccCCCCC--CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccC
Q 041843 398 EGFLVYAGSGLTEAPA-DVRGWEMGRRLSLMKNSIGNLPT--VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSD 474 (800)
Q Consensus 398 ~~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~ 474 (800)
-+.+...+..++.+|+ .+..++++++|++++|.+..++. |.++++|++|+|++|.++.+++..|.++++|++|++++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC
Confidence 4677888888888875 58889999999999999998874 88999999999999999999998899999999999999
Q ss_pred ccccccccc-cccccccccEEeccCCCCcc--cchhhhcCccCceecccccc
Q 041843 475 NIMLRQLPT-GISKLVSLQLLDISYTSVTG--LPEGLKALVNLKCLNLDWAD 523 (800)
Q Consensus 475 ~~~~~~lp~-~i~~L~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~~ 523 (800)
| .+..+|. .|+++++|++|++++|.++. +|..++.+++|++|++++|.
T Consensus 134 N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 134 T-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp S-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred C-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 9 6777764 58999999999999999886 57888999999999999875
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=6.5e-20 Score=190.96 Aligned_cols=169 Identities=21% Similarity=0.264 Sum_probs=87.3
Q ss_pred EEEcCCCccccCccccccccceEEEccccccCCCCC--CCCCCcceEEEeecCCCcccc--cccccCCCCCcEEEccCcc
Q 041843 401 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPT--VPTCPHLLTLFLNDNPLRTIT--GGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~Ls~~~ 476 (800)
+...+.++..+|..+. +++++|++++|.+..+|. +.++++|++|++++|.+..+. +..+..+++|++|++++|
T Consensus 12 l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n- 88 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN- 88 (306)
T ss_dssp EECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-
T ss_pred EEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-
Confidence 3444445555554332 455566666666555553 455566666666666554332 122344556666666665
Q ss_pred ccccccccccccccccEEeccCCCCcccch--hhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCc
Q 041843 477 MLRQLPTGISKLVSLQLLDISYTSVTGLPE--GLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGR 554 (800)
Q Consensus 477 ~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~ 554 (800)
.+..+|..+..+++|++|++++|.++.+|. .+..+++|++|++++|.. ..+++..+.++++|++|++++|.+...
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 165 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQEN-- 165 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECTTCEEGGG--
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECCCCccccc--
Confidence 445555555556666666666665555443 455556666666655543 333333355556666666555543310
Q ss_pred ccccccchHHHhhCCCCCcEEEEEecc
Q 041843 555 FSSRYVNVAEELLGLKYLEVLEITFRS 581 (800)
Q Consensus 555 ~~~~~~~~~~~l~~l~~L~~L~l~~~~ 581 (800)
..+..+..+++|+.|+++.|.
T Consensus 166 ------~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 166 ------FLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ------EECSCCTTCTTCCEEECTTSC
T ss_pred ------cchhHHhhCcCCCEEECCCCC
Confidence 123334445555555555443
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=3.3e-20 Score=203.13 Aligned_cols=312 Identities=20% Similarity=0.157 Sum_probs=173.0
Q ss_pred EEEcCCCccccCccccccccceEEEccccccC-CCC-CCCCCCcc-------------eEEEeecCCCcccccccccCCC
Q 041843 401 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIG-NLP-TVPTCPHL-------------LTLFLNDNPLRTITGGFFQSMP 465 (800)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~l~-~~~~~~~L-------------~~L~l~~~~l~~~~~~~~~~l~ 465 (800)
+...+..+..+|..+..+++++.|++++|.+. .+| .+.++.+| +.|++++|.++++|.. .+
T Consensus 16 L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~----~~ 91 (454)
T 1jl5_A 16 PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL----PP 91 (454)
T ss_dssp ------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC----CT
T ss_pred hhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC----cC
Confidence 33445566677777777788888888877763 555 35555554 7788888877776651 36
Q ss_pred CCcEEEccCccccccccccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEee
Q 041843 466 CLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMF 545 (800)
Q Consensus 466 ~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~ 545 (800)
+|++|++++| .+..+|.. +.+|++|++++|.++.+|.. .++|++|++++|. +..+|. ++++++|++|+++
T Consensus 92 ~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp~--~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 92 HLESLVASCN-SLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLPE--LQNSSFLKIIDVD 161 (454)
T ss_dssp TCSEEECCSS-CCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCCC--CTTCTTCCEEECC
T ss_pred CCCEEEccCC-cCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCcc--cCCCCCCCEEECC
Confidence 7888888877 56667753 36778888888877776642 2578888888764 455773 7788888888888
Q ss_pred ecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCce
Q 041843 546 ATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNT 625 (800)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~ 625 (800)
+|.+... +. ...+|+.|+++.|.+..++. ....+.++.|.+.++.... ++ . ..++|++
T Consensus 162 ~N~l~~l----------p~---~~~~L~~L~L~~n~l~~l~~----~~~l~~L~~L~l~~N~l~~-l~--~--~~~~L~~ 219 (454)
T 1jl5_A 162 NNSLKKL----------PD---LPPSLEFIAAGNNQLEELPE----LQNLPFLTAIYADNNSLKK-LP--D--LPLSLES 219 (454)
T ss_dssp SSCCSCC----------CC---CCTTCCEEECCSSCCSSCCC----CTTCTTCCEEECCSSCCSS-CC--C--CCTTCCE
T ss_pred CCcCccc----------CC---CcccccEEECcCCcCCcCcc----ccCCCCCCEEECCCCcCCc-CC--C--CcCcccE
Confidence 7766531 11 12477778877777665432 2223456666666654321 11 1 1246777
Q ss_pred EEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCChhhhcCCCCcEEEEecCcchhHhhccCCCCCcCc
Q 041843 626 LYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPE 705 (800)
Q Consensus 626 L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 705 (800)
|++++|... .++ .+ ..+++|+.|++++| .++.++. .+++|++|++++|. ++.
T Consensus 220 L~l~~n~l~-~lp-~~----------~~l~~L~~L~l~~N-~l~~l~~--~~~~L~~L~l~~N~-l~~------------ 271 (454)
T 1jl5_A 220 IVAGNNILE-ELP-EL----------QNLPFLTTIYADNN-LLKTLPD--LPPSLEALNVRDNY-LTD------------ 271 (454)
T ss_dssp EECCSSCCS-SCC-CC----------TTCTTCCEEECCSS-CCSSCCS--CCTTCCEEECCSSC-CSC------------
T ss_pred EECcCCcCC-ccc-cc----------CCCCCCCEEECCCC-cCCcccc--cccccCEEECCCCc-ccc------------
Confidence 777766543 232 12 24567777777776 4444443 24677777777664 211
Q ss_pred ccCccCCcCCcccEeeccCcccccccCCCCCCCCCcceEeecCC---------CCCCCCCCCCCCCCCcceEEEeehhcc
Q 041843 706 MTGIISSPFAKLQHLQLGGLGRLKSIYWKPLPLPRLKELTVVDC---------DSLEKLPLDSNSANGRRILIRGDEDWW 776 (800)
Q Consensus 706 l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c---------~~L~~L~~~~n~~~l~~~~i~~~~~~~ 776 (800)
.+..+++|+.|++.++ .+..++.. .++|+.|+++++ ++|+.|.++.|.... +......+
T Consensus 272 ----l~~~~~~L~~L~ls~N-~l~~l~~~---~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~----lp~~~~~L 339 (454)
T 1jl5_A 272 ----LPELPQSLTFLDVSEN-IFSGLSEL---PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE----LPALPPRL 339 (454)
T ss_dssp ----CCCCCTTCCEEECCSS-CCSEESCC---CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC----CCCCCTTC
T ss_pred ----cCcccCcCCEEECcCC-ccCcccCc---CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc----ccccCCcC
Confidence 1223467777777764 34443322 256666666553 245555555554331 11123445
Q ss_pred ccceecchhhhh
Q 041843 777 RRLQWEDEATQN 788 (800)
Q Consensus 777 ~~l~~~~~~~~~ 788 (800)
+.|+..+|.+..
T Consensus 340 ~~L~L~~N~l~~ 351 (454)
T 1jl5_A 340 ERLIASFNHLAE 351 (454)
T ss_dssp CEEECCSSCCSC
T ss_pred CEEECCCCcccc
Confidence 666666676665
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=9.2e-19 Score=184.34 Aligned_cols=259 Identities=18% Similarity=0.207 Sum_probs=199.7
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCCC--CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPT--VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
+.+...+..+..+|..+. +.++.|++++|.+..++. +.++++|++|++++|.+..+.+..|..+++|++|++++|
T Consensus 34 ~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n- 110 (330)
T 1xku_A 34 RVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN- 110 (330)
T ss_dssp TEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-
T ss_pred eEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-
Confidence 456667777888876654 689999999999988874 899999999999999999997777999999999999999
Q ss_pred ccccccccccccccccEEeccCCCCcccch-hhhcCccCceeccccccccc-ccchhhhCCCCCCcEEEeeecCCCCCCc
Q 041843 477 MLRQLPTGISKLVSLQLLDISYTSVTGLPE-GLKALVNLKCLNLDWADELV-EVPQQLLSNFSRLRVLRMFATGVGSYGR 554 (800)
Q Consensus 477 ~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~-~lp~~~~~~L~~L~~L~l~~~~~~~~~~ 554 (800)
.+..+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.... .+....+.++++|++|++.+|.+...
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-- 186 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-- 186 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC--
T ss_pred cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC--
Confidence 7888988775 799999999999999765 58999999999999886421 13334488999999999999987642
Q ss_pred ccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCc
Q 041843 555 FSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWI 634 (800)
Q Consensus 555 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 634 (800)
+..+ .++|+.|+++.|.+..... ........++.|.+.++... ......+..+++|++|++++|...
T Consensus 187 --------~~~~--~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 187 --------PQGL--PPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp --------CSSC--CTTCSEEECTTSCCCEECT--GGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEECCSSCCS
T ss_pred --------Cccc--cccCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCcCc-eeChhhccCCCCCCEEECCCCcCc
Confidence 2222 2789999999888765421 11223357888999887643 333356788999999999999754
Q ss_pred ceEEeccccccccCCCCcCCCCccEEeeecCCCCCCChh--h------hcCCCCcEEEEecCc
Q 041843 635 KGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTF--L------VFAPNLKSISVRDCD 689 (800)
Q Consensus 635 ~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~--l------~~l~~L~~L~l~~~~ 689 (800)
.+|.. ...+++|+.|++++| .++.++. + ...++|+.|++.+++
T Consensus 254 -~lp~~----------l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 254 -KVPGG----------LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp -SCCTT----------TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred -cCChh----------hccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 33322 235799999999998 4565543 2 135789999999877
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=1.8e-19 Score=187.65 Aligned_cols=219 Identities=21% Similarity=0.243 Sum_probs=167.5
Q ss_pred eEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc---cccccccccccEEeccC
Q 041843 422 RRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL---PTGISKLVSLQLLDISY 498 (800)
Q Consensus 422 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l---p~~i~~L~~L~~L~L~~ 498 (800)
+.++..++.+..+|.- -.++|++|++++|.++.+++.+|..+++|++|++++| .+..+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence 3678888888888852 2378999999999999999988999999999999999 55544 67788899999999999
Q ss_pred CCCcccchhhhcCccCceecccccccccccch-hhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEE
Q 041843 499 TSVTGLPEGLKALVNLKCLNLDWADELVEVPQ-QLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEI 577 (800)
Q Consensus 499 ~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 577 (800)
|.+..+|..+..+++|++|++++|. +..++. ..+.++++|++|++++|.+.. ..+..+..+++|+.|++
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRV---------AFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEE---------CSTTTTTTCTTCCEEEC
T ss_pred CccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCc---------cchhhcccCcCCCEEEC
Confidence 9999999999999999999999886 466654 458899999999999997754 44556788899999998
Q ss_pred EeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCc
Q 041843 578 TFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSL 657 (800)
Q Consensus 578 ~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L 657 (800)
+.|.+... ..+..+..+++|++|++++|.... +++.. ...+++|
T Consensus 158 ~~n~l~~~--------------------------~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~---------~~~l~~L 201 (306)
T 2z66_A 158 AGNSFQEN--------------------------FLPDIFTELRNLTFLDLSQCQLEQ-LSPTA---------FNSLSSL 201 (306)
T ss_dssp TTCEEGGG--------------------------EECSCCTTCTTCCEEECTTSCCCE-ECTTT---------TTTCTTC
T ss_pred CCCccccc--------------------------cchhHHhhCcCCCEEECCCCCcCC-cCHHH---------hcCCCCC
Confidence 87765420 111346667888888888876443 22211 1246788
Q ss_pred cEEeeecCCCCCCCh--hhhcCCCCcEEEEecCc
Q 041843 658 EEVTVDNCGNLKHLT--FLVFAPNLKSISVRDCD 689 (800)
Q Consensus 658 ~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~~~ 689 (800)
+.|+++++ .++.++ .+..+++|++|++++|.
T Consensus 202 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 202 QVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp CEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred CEEECCCC-ccCccChhhccCcccCCEeECCCCC
Confidence 88888777 344443 35667777777777765
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=2.2e-19 Score=189.22 Aligned_cols=282 Identities=19% Similarity=0.212 Sum_probs=209.5
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
+.+...+..+..+|..+. ++++.|++++|.+..++ .+.++++|++|++++|.++.+++..|..+++|++|++++|
T Consensus 36 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n- 112 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN- 112 (332)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-
T ss_pred CEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-
Confidence 456667777888877664 68999999999998886 4899999999999999999998888999999999999999
Q ss_pred ccccccccccccccccEEeccCCCCcccchh-hhcCccCceeccccccccc-ccchhhhCCCCCCcEEEeeecCCCCCCc
Q 041843 477 MLRQLPTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDWADELV-EVPQQLLSNFSRLRVLRMFATGVGSYGR 554 (800)
Q Consensus 477 ~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~-~lp~~~~~~L~~L~~L~l~~~~~~~~~~ 554 (800)
.+..+|..+. ++|++|++++|.++.+|.. +..+++|++|++++|..-. .+++..+..+ +|++|++++|.+...
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l-- 187 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI-- 187 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC--
T ss_pred cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc--
Confidence 7888998776 8999999999999998764 8999999999999886421 1333447777 999999999987642
Q ss_pred ccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCc
Q 041843 555 FSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWI 634 (800)
Q Consensus 555 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 634 (800)
+..+ .++|+.|+++.|.+..... ........++.|.+.++... ......+..+++|+.|++++|...
T Consensus 188 --------~~~~--~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 188 --------PKDL--PETLNELHLDHNKIQAIEL--EDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp --------CSSS--CSSCSCCBCCSSCCCCCCT--TSSTTCTTCSCCBCCSSCCC-CCCTTGGGGCTTCCEEECCSSCCC
T ss_pred --------Cccc--cCCCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCcCC-cCChhHhhCCCCCCEEECCCCcCe
Confidence 2222 2689999999988766432 11223457888999887543 333346788999999999998754
Q ss_pred ceEEeccccccccCCCCcCCCCccEEeeecCCCCCCChh--hh------cCCCCcEEEEecCcchh-HhhccCCCCCcCc
Q 041843 635 KGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTF--LV------FAPNLKSISVRDCDDME-EIISAGEFDDIPE 705 (800)
Q Consensus 635 ~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~--l~------~l~~L~~L~l~~~~~l~-~i~~~~~~~~~~~ 705 (800)
.+|..+ ..+++|+.|+++++ .++.++. +. ..++|+.|++.+++... .+..
T Consensus 255 -~lp~~l----------~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~--------- 313 (332)
T 2ft3_A 255 -RVPAGL----------PDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP--------- 313 (332)
T ss_dssp -BCCTTG----------GGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG---------
T ss_pred -ecChhh----------hcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCc---------
Confidence 344333 35799999999998 5665543 22 25789999999987321 1111
Q ss_pred ccCccCCcCCcccEeeccCc
Q 041843 706 MTGIISSPFAKLQHLQLGGL 725 (800)
Q Consensus 706 l~~~~~~~~~~L~~L~l~~~ 725 (800)
.....+++|+.|.+.++
T Consensus 314 ---~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 314 ---ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp ---GGGTTBCCSTTEEC---
T ss_pred ---ccccccchhhhhhcccc
Confidence 23445677777777664
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=2e-18 Score=188.94 Aligned_cols=260 Identities=19% Similarity=0.219 Sum_probs=126.3
Q ss_pred ccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccC
Q 041843 419 EMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISY 498 (800)
Q Consensus 419 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~ 498 (800)
.+++.|++++|.+..++.+. ++|++|++++|.++.+| . |..+++|++|++++| .+..+|..+ .+|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcC
Confidence 34444444444444443322 34555555555554444 2 445555555555555 334444322 2455555555
Q ss_pred CCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEE
Q 041843 499 TSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEIT 578 (800)
Q Consensus 499 ~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 578 (800)
|.++.+| .++.+++|++|++++|. +..+|.. .++|++|++++|.+.. .+ .++.+++|+.|+++
T Consensus 183 n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~----~~~L~~L~l~~n~l~~----------lp-~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 183 NQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL----PLSLESIVAGNNILEE----------LP-ELQNLPFLTTIYAD 245 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC----CTTCCEEECCSSCCSS----------CC-CCTTCTTCCEEECC
T ss_pred CcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC----cCcccEEECcCCcCCc----------cc-ccCCCCCCCEEECC
Confidence 5555544 34555555555555443 2333331 1345555555544331 22 25566667777776
Q ss_pred eccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCcc
Q 041843 579 FRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLE 658 (800)
Q Consensus 579 ~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~ 658 (800)
.|.+..++. ....++.|.+.++.... ++ ..+++|+.|++++|.... ++ ..+++|+
T Consensus 246 ~N~l~~l~~------~~~~L~~L~l~~N~l~~-l~----~~~~~L~~L~ls~N~l~~-l~-------------~~~~~L~ 300 (454)
T 1jl5_A 246 NNLLKTLPD------LPPSLEALNVRDNYLTD-LP----ELPQSLTFLDVSENIFSG-LS-------------ELPPNLY 300 (454)
T ss_dssp SSCCSSCCS------CCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSE-ES-------------CCCTTCC
T ss_pred CCcCCcccc------cccccCEEECCCCcccc-cC----cccCcCCEEECcCCccCc-cc-------------CcCCcCC
Confidence 666554332 12456666666554221 11 113566667766665332 11 0124666
Q ss_pred EEeeecCCCCCCChhhhcC-CCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcccccccCCCCCC
Q 041843 659 EVTVDNCGNLKHLTFLVFA-PNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLKSIYWKPLP 737 (800)
Q Consensus 659 ~L~l~~c~~l~~l~~l~~l-~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 737 (800)
.|++++| .++.++ .+ ++|++|++++|. +.. .+..+++|+.|++.++ .+..++. .
T Consensus 301 ~L~l~~N-~l~~i~---~~~~~L~~L~Ls~N~-l~~----------------lp~~~~~L~~L~L~~N-~l~~lp~---~ 355 (454)
T 1jl5_A 301 YLNASSN-EIRSLC---DLPPSLEELNVSNNK-LIE----------------LPALPPRLERLIASFN-HLAEVPE---L 355 (454)
T ss_dssp EEECCSS-CCSEEC---CCCTTCCEEECCSSC-CSC----------------CCCCCTTCCEEECCSS-CCSCCCC---C
T ss_pred EEECcCC-cCCccc---CCcCcCCEEECCCCc-ccc----------------ccccCCcCCEEECCCC-ccccccc---h
Confidence 6666665 233222 22 366666666653 111 2223567777777664 4555544 4
Q ss_pred CCCcceEeecCCCCCCC
Q 041843 738 LPRLKELTVVDCDSLEK 754 (800)
Q Consensus 738 ~~~L~~L~l~~c~~L~~ 754 (800)
+++|+.|+++++ +++.
T Consensus 356 l~~L~~L~L~~N-~l~~ 371 (454)
T 1jl5_A 356 PQNLKQLHVEYN-PLRE 371 (454)
T ss_dssp CTTCCEEECCSS-CCSS
T ss_pred hhhccEEECCCC-CCCc
Confidence 567777777664 3444
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=3.7e-18 Score=192.56 Aligned_cols=231 Identities=25% Similarity=0.215 Sum_probs=154.4
Q ss_pred ccEEEEcCCCccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccc
Q 041843 398 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM 477 (800)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~ 477 (800)
...+.+.+..+..+|..+. ++++.|++++|.+..+|. .+++|++|++++|.++.+|. .+++|++|++++| .
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~ 112 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-P 112 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-C
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-c
Confidence 4567777778888877665 688888888888888877 57888888888888887775 5688888888888 6
Q ss_pred cccccccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccc
Q 041843 478 LRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSS 557 (800)
Q Consensus 478 ~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~ 557 (800)
+..+|. .+.+|++|++++|.++.+|.. +++|++|++++|. +..+|. .+.+|+.|++++|.+..
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~------ 175 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTS------ 175 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC------
T ss_pred CCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCC------
Confidence 777776 567888888888888888764 4788888888774 566664 35678888888887653
Q ss_pred cccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceE
Q 041843 558 RYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGL 637 (800)
Q Consensus 558 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l 637 (800)
.+ ..+++|+.|+++.|.+..++. ..+.++.|.+.++... .++ ..+++|+.|++++|.... +
T Consensus 176 ----l~---~~~~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 176 ----LP---MLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLT-SLP----ALPSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp ----CC---CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCS-SCC----CCCTTCCEEECCSSCCSC-C
T ss_pred ----Cc---ccCCCCcEEECCCCCCCCCCC------ccchhhEEECcCCccc-ccC----CCCCCCCEEEccCCccCc-C
Confidence 22 446778888888877665332 1235555555554321 111 113556666666654322 1
Q ss_pred EeccccccccCCCCcCCCCccEEeeecCCCCCCChhhhcCCCCcEEEEecCc
Q 041843 638 KIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTFLVFAPNLKSISVRDCD 689 (800)
Q Consensus 638 ~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~~~ 689 (800)
+ ..+++|+.|++++| .++.++. .+++|+.|++++|.
T Consensus 237 p-------------~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 237 P-------------VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQ 272 (622)
T ss_dssp C-------------CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC
T ss_pred C-------------CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCCC
Confidence 1 12456666666665 4555554 45666666666653
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=3.4e-19 Score=196.25 Aligned_cols=242 Identities=18% Similarity=0.213 Sum_probs=189.9
Q ss_pred ceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc-cccccccccccEEeccCC
Q 041843 421 GRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQLLDISYT 499 (800)
Q Consensus 421 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~ 499 (800)
...++..+..+..+|... .+++++|++++|.++.+++..|.++++|++|+|++| .+..+ |..+.++++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC
Confidence 456777888888888522 278999999999999998888999999999999999 55554 578999999999999999
Q ss_pred CCcccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEE
Q 041843 500 SVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEIT 578 (800)
Q Consensus 500 ~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 578 (800)
.++.+|.. +..+++|++|++++|. +..+|...+.++++|++|++.+|..... .....+.++++|+.|+++
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~--------i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEY--------ISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCE--------ECTTTTTTCTTCCEEECT
T ss_pred cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccc--------cChhhccCCCCCCEEECC
Confidence 99998765 8889999999999885 6788887799999999999998654431 233457888999999998
Q ss_pred eccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCcc
Q 041843 579 FRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLE 658 (800)
Q Consensus 579 ~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~ 658 (800)
.|.+..+ ..+..+++|+.|++++|......+..+. .+++|+
T Consensus 205 ~n~l~~~-----------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------~l~~L~ 245 (452)
T 3zyi_A 205 MCNIKDM-----------------------------PNLTPLVGLEELEMSGNHFPEIRPGSFH----------GLSSLK 245 (452)
T ss_dssp TSCCSSC-----------------------------CCCTTCTTCCEEECTTSCCSEECGGGGT----------TCTTCC
T ss_pred CCccccc-----------------------------ccccccccccEEECcCCcCcccCccccc----------CccCCC
Confidence 7765432 2366789999999999976553232332 478999
Q ss_pred EEeeecCCCCCCC--hhhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcc
Q 041843 659 EVTVDNCGNLKHL--TFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLG 726 (800)
Q Consensus 659 ~L~l~~c~~l~~l--~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 726 (800)
.|+++++ .++.+ ..+..+++|+.|+|++|. ++.++. .....+++|+.|++.+.+
T Consensus 246 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 246 KLWVMNS-QVSLIERNAFDGLASLVELNLAHNN-LSSLPH------------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCT------------TSSTTCTTCCEEECCSSC
T ss_pred EEEeCCC-cCceECHHHhcCCCCCCEEECCCCc-CCccCh------------HHhccccCCCEEEccCCC
Confidence 9999998 44444 247789999999999985 333322 344568899999998744
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=1.6e-19 Score=185.94 Aligned_cols=218 Identities=18% Similarity=0.225 Sum_probs=124.0
Q ss_pred eEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc-cccccccccccEEeccCCC
Q 041843 422 RRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQLLDISYTS 500 (800)
Q Consensus 422 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~~ 500 (800)
+.++..++.+..+|. .-.++|+.|++++|.++.+++..|..+++|++|++++| .+..+ |..+.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence 345555555555553 12356666666666666666555666666666666666 33333 5556666666666666664
Q ss_pred -Cccc-chhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEE
Q 041843 501 -VTGL-PEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEIT 578 (800)
Q Consensus 501 -i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 578 (800)
+..+ |..+..+++|++|++++|. +..+++..+.++++|++|++++|.+.. .....+..+++|+.|+++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQA---------LPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC---------CCTTTTTTCTTCCEEECC
T ss_pred CccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccc---------cCHhHhccCCCccEEECC
Confidence 5555 4456666666666666554 344444445666666666666665543 223345566666666666
Q ss_pred eccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCcc
Q 041843 579 FRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLE 658 (800)
Q Consensus 579 ~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~ 658 (800)
.|.+..++ ...+..+++|++|++++|......+..+ ..+++|+
T Consensus 162 ~n~l~~~~---------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------~~l~~L~ 204 (285)
T 1ozn_A 162 GNRISSVP---------------------------ERAFRGLHSLDRLLLHQNRVAHVHPHAF----------RDLGRLM 204 (285)
T ss_dssp SSCCCEEC---------------------------TTTTTTCTTCCEEECCSSCCCEECTTTT----------TTCTTCC
T ss_pred CCcccccC---------------------------HHHhcCccccCEEECCCCcccccCHhHc----------cCccccc
Confidence 55443211 1234556667777776665433211111 2356777
Q ss_pred EEeeecCCCCCCChh--hhcCCCCcEEEEecCc
Q 041843 659 EVTVDNCGNLKHLTF--LVFAPNLKSISVRDCD 689 (800)
Q Consensus 659 ~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~~~ 689 (800)
.|+++++ .++.++. +..+++|++|++++++
T Consensus 205 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 205 TLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred EeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 7777766 4444442 5667777777777665
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=9.4e-19 Score=180.05 Aligned_cols=219 Identities=23% Similarity=0.342 Sum_probs=178.7
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
..+...+.++..+|..+ .++++.|++++|.+..++ .+..+++|++|++++|.++.+.+..|..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 44566777788887655 368999999999998887 38899999999999999999988789999999999999995
Q ss_pred ccccc-cccccccccccEEeccCCCCccc-chhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCc
Q 041843 477 MLRQL-PTGISKLVSLQLLDISYTSVTGL-PEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGR 554 (800)
Q Consensus 477 ~~~~l-p~~i~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~ 554 (800)
.+..+ |..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+|...++++++|++|++++|.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 167 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS--- 167 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE---
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccc---
Confidence 46666 77899999999999999999997 5668999999999999885 577877768999999999999998764
Q ss_pred ccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCc
Q 041843 555 FSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWI 634 (800)
Q Consensus 555 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 634 (800)
.....+..+++|+.|+++.|.+... .+..+..+++|+.|++++|...
T Consensus 168 ------~~~~~~~~l~~L~~L~l~~n~l~~~---------------------------~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 168 ------VPERAFRGLHSLDRLLLHQNRVAHV---------------------------HPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp ------ECTTTTTTCTTCCEEECCSSCCCEE---------------------------CTTTTTTCTTCCEEECCSSCCS
T ss_pred ------cCHHHhcCccccCEEECCCCccccc---------------------------CHhHccCcccccEeeCCCCcCC
Confidence 3344578899999999988765432 1245777899999999999755
Q ss_pred ceEEeccccccccCCCCcCCCCccEEeeecCC
Q 041843 635 KGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCG 666 (800)
Q Consensus 635 ~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 666 (800)
. ++.... ..+++|+.|++++++
T Consensus 215 ~-~~~~~~---------~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 215 A-LPTEAL---------APLRALQYLRLNDNP 236 (285)
T ss_dssp C-CCHHHH---------TTCTTCCEEECCSSC
T ss_pred c-CCHHHc---------ccCcccCEEeccCCC
Confidence 4 332222 247899999999874
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=9.6e-19 Score=191.92 Aligned_cols=242 Identities=17% Similarity=0.219 Sum_probs=189.8
Q ss_pred ceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc-cccccccccccEEeccCC
Q 041843 421 GRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQLLDISYT 499 (800)
Q Consensus 421 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~ 499 (800)
.+.++..+..+..+|... .++++.|++++|.++.+++..|.++++|++|+|++| .+..+ |..+.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC
Confidence 456778888888888532 278999999999999999888999999999999999 55554 578999999999999999
Q ss_pred CCcccch-hhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEE
Q 041843 500 SVTGLPE-GLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEIT 578 (800)
Q Consensus 500 ~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 578 (800)
.++.+|. .+..+++|++|++++|. +..+|...+.++++|++|++.+|..... .....+.++++|+.|+++
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~--------i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSY--------ISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCE--------ECTTTTTTCSSCCEEECT
T ss_pred cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcce--------eCcchhhcccccCeecCC
Confidence 9999876 58999999999999875 6788887799999999999998654431 233467889999999998
Q ss_pred eccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCcc
Q 041843 579 FRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLE 658 (800)
Q Consensus 579 ~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~ 658 (800)
.|.+..+ ..+..+++|+.|++++|......+..+ ..+++|+
T Consensus 194 ~n~l~~~-----------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------~~l~~L~ 234 (440)
T 3zyj_A 194 MCNLREI-----------------------------PNLTPLIKLDELDLSGNHLSAIRPGSF----------QGLMHLQ 234 (440)
T ss_dssp TSCCSSC-----------------------------CCCTTCSSCCEEECTTSCCCEECTTTT----------TTCTTCC
T ss_pred CCcCccc-----------------------------cccCCCcccCEEECCCCccCccChhhh----------ccCccCC
Confidence 7765432 236678999999999997554222222 2579999
Q ss_pred EEeeecCCCCCCCh--hhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcc
Q 041843 659 EVTVDNCGNLKHLT--FLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLG 726 (800)
Q Consensus 659 ~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 726 (800)
.|+++++ .++.++ .+..+++|+.|+|++|. ++.+.. .....+++|+.|++.+.+
T Consensus 235 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 235 KLWMIQS-QIQVIERNAFDNLQSLVEINLAHNN-LTLLPH------------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTC-CCCEECTTSSTTCTTCCEEECTTSC-CCCCCT------------TTTSSCTTCCEEECCSSC
T ss_pred EEECCCC-ceeEEChhhhcCCCCCCEEECCCCC-CCccCh------------hHhccccCCCEEEcCCCC
Confidence 9999998 455443 47789999999999975 333322 345568899999998643
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=7e-20 Score=191.42 Aligned_cols=262 Identities=16% Similarity=0.161 Sum_probs=133.1
Q ss_pred ccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEec
Q 041843 419 EMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDI 496 (800)
Q Consensus 419 ~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L 496 (800)
++++.|++++|.+..++ .+..+++|++|++++|.+...++ |..+++|++|++++| .+..+| ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEE----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-cccccc----CCCCcCEEEC
Confidence 35555555555555544 24555555555555555554443 455555555555555 344333 2255555555
Q ss_pred cCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHh-hCCCCCcEE
Q 041843 497 SYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEEL-LGLKYLEVL 575 (800)
Q Consensus 497 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L 575 (800)
++|.++.++.. .+++|++|++++|. +..+++..++.+++|++|++++|.+.. ..+..+ ..+++|+.|
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDT---------VNFAELAASSDTLEHL 174 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCE---------EEGGGGGGGTTTCCEE
T ss_pred CCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCc---------ccHHHHhhccCcCCEE
Confidence 55555554422 24555555555543 333433334555555555555555443 222222 244555555
Q ss_pred EEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCC
Q 041843 576 EITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFR 655 (800)
Q Consensus 576 ~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~ 655 (800)
+++.|.+..+ .....+++|++|++++|... .++..+. .++
T Consensus 175 ~L~~N~l~~~-----------------------------~~~~~l~~L~~L~Ls~N~l~-~l~~~~~----------~l~ 214 (317)
T 3o53_A 175 NLQYNFIYDV-----------------------------KGQVVFAKLKTLDLSSNKLA-FMGPEFQ----------SAA 214 (317)
T ss_dssp ECTTSCCCEE-----------------------------ECCCCCTTCCEEECCSSCCC-EECGGGG----------GGT
T ss_pred ECCCCcCccc-----------------------------ccccccccCCEEECCCCcCC-cchhhhc----------ccC
Confidence 5554443321 11223567777777776543 2333322 356
Q ss_pred CccEEeeecCCCCCCCh-hhhcCCCCcEEEEecCcch-hHhhccCCCCCcCcccCccCCcCCcccEeeccCcccccccCC
Q 041843 656 SLEEVTVDNCGNLKHLT-FLVFAPNLKSISVRDCDDM-EEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLKSIYW 733 (800)
Q Consensus 656 ~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~~~~l-~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~ 733 (800)
+|+.|++++| .++.++ .+..+++|+.|++++|+.. ..+. .....+++|+.|.+.++..++....
T Consensus 215 ~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~-------------~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 215 GVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLR-------------DFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHH-------------HHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred cccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHH-------------HHHhccccceEEECCCchhccCCch
Confidence 7777777776 444443 3556677777777776543 1111 1233456666666666555555444
Q ss_pred CCCCCCCcceEeecCCCCCC
Q 041843 734 KPLPLPRLKELTVVDCDSLE 753 (800)
Q Consensus 734 ~~~~~~~L~~L~l~~c~~L~ 753 (800)
.....+.+....-..|..|.
T Consensus 281 ~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 281 EECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp CCCSSTTCEEETTEEEBCCT
T ss_pred hccCCCceecccceeeccCC
Confidence 33334444444444455444
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.3e-17 Score=187.98 Aligned_cols=255 Identities=20% Similarity=0.167 Sum_probs=188.9
Q ss_pred ccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccC
Q 041843 419 EMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISY 498 (800)
Q Consensus 419 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~ 498 (800)
..++.|++++|.+..+|.... ++|++|++++|.++.+|. .+++|++|+|++| .+..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 357899999999999986333 899999999999998886 5789999999999 7888987 789999999999
Q ss_pred CCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEE
Q 041843 499 TSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEIT 578 (800)
Q Consensus 499 ~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 578 (800)
|.++.+|. .+.+|+.|++++|. +..+|.. +++|++|++++|.+... +. .+.+|+.|+++
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~l----------~~---~~~~L~~L~L~ 169 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLASL----------PA---LPSELCKLWAY 169 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSCC----------CC---CCTTCCEEECC
T ss_pred CcCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCCc----------CC---ccCCCCEEECC
Confidence 99999987 67899999999875 6778863 58999999999987642 11 34789999999
Q ss_pred eccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCcc
Q 041843 579 FRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLE 658 (800)
Q Consensus 579 ~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~ 658 (800)
.|.+..++ ...+.++.|+++++.... ++ ..+++|+.|++++|.... ++ ..+++|+
T Consensus 170 ~N~l~~l~------~~~~~L~~L~Ls~N~l~~-l~----~~~~~L~~L~L~~N~l~~-l~-------------~~~~~L~ 224 (622)
T 3g06_A 170 NNQLTSLP------MLPSGLQELSVSDNQLAS-LP----TLPSELYKLWAYNNRLTS-LP-------------ALPSGLK 224 (622)
T ss_dssp SSCCSCCC------CCCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSS-CC-------------CCCTTCC
T ss_pred CCCCCCCc------ccCCCCcEEECCCCCCCC-CC----CccchhhEEECcCCcccc-cC-------------CCCCCCC
Confidence 98887654 233577778877765322 21 124678888888775432 11 1247788
Q ss_pred EEeeecCCCCCCChhhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcccccccCCCCCCC
Q 041843 659 EVTVDNCGNLKHLTFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLKSIYWKPLPL 738 (800)
Q Consensus 659 ~L~l~~c~~l~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 738 (800)
.|++++| .++.++ ..+++|+.|++++|. ++.+ +..+++|+.|++.++ .+..++.....+
T Consensus 225 ~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~l----------------p~~~~~L~~L~Ls~N-~L~~lp~~l~~l 283 (622)
T 3g06_A 225 ELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSL----------------PMLPSGLLSLSVYRN-QLTRLPESLIHL 283 (622)
T ss_dssp EEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCC----------------CCCCTTCCEEECCSS-CCCSCCGGGGGS
T ss_pred EEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcC----------------CcccccCcEEeCCCC-CCCcCCHHHhhc
Confidence 8888877 566666 566888888888864 2221 225677888888875 555665545556
Q ss_pred CCcceEeecCC
Q 041843 739 PRLKELTVVDC 749 (800)
Q Consensus 739 ~~L~~L~l~~c 749 (800)
++|+.|+++++
T Consensus 284 ~~L~~L~L~~N 294 (622)
T 3g06_A 284 SSETTVNLEGN 294 (622)
T ss_dssp CTTCEEECCSC
T ss_pred cccCEEEecCC
Confidence 66666666654
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=1.2e-17 Score=170.11 Aligned_cols=196 Identities=24% Similarity=0.433 Sum_probs=145.7
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCCC--CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPT--VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
..+...+..+..+|..+. .+++.|++++|.+..++. +.++++|++|++++|.++.+++..|..+++|++|++++|
T Consensus 19 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n- 95 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN- 95 (270)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-
T ss_pred CEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-
Confidence 456666677777766554 578888888888877773 778888888888888888888877788888888888888
Q ss_pred ccccccc-cccccccccEEeccCCCCcccch-hhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCc
Q 041843 477 MLRQLPT-GISKLVSLQLLDISYTSVTGLPE-GLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGR 554 (800)
Q Consensus 477 ~~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~ 554 (800)
.+..+|. .+.++++|++|++++|.++.+|. .++.+++|++|++++|. +..+|...++++++|++|++++|.+..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~--- 171 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKR--- 171 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC---
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcE---
Confidence 5555553 45778888888888888888654 46788888888888774 567777667888888888888887664
Q ss_pred ccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCc
Q 041843 555 FSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWI 634 (800)
Q Consensus 555 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 634 (800)
..+..+..+++|+.|+++.|.+..+ +...+..+++|+.|++++|+..
T Consensus 172 ------~~~~~~~~l~~L~~L~L~~N~l~~~---------------------------~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 ------VPEGAFDKLTELKTLKLDNNQLKRV---------------------------PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ------CCTTTTTTCTTCCEEECCSSCCSCC---------------------------CTTTTTTCTTCCEEECCSSCBC
T ss_pred ------eChhHhccCCCcCEEECCCCcCCcC---------------------------CHHHhccccCCCEEEecCCCee
Confidence 2334567778888888877665432 1134667888999999888643
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=3.2e-19 Score=185.97 Aligned_cols=244 Identities=16% Similarity=0.105 Sum_probs=129.7
Q ss_pred ccceEEEccccccCCCCC-CCCCCcceEEEeecCCCcc--ccccccc-------CCCCCcEEEccCccccccccccc--c
Q 041843 419 EMGRRLSLMKNSIGNLPT-VPTCPHLLTLFLNDNPLRT--ITGGFFQ-------SMPCLTVLKMSDNIMLRQLPTGI--S 486 (800)
Q Consensus 419 ~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~--~~~~~~~-------~l~~L~~L~Ls~~~~~~~lp~~i--~ 486 (800)
.+++.+++.+|.+ .+|. +... |+.|++++|.+.. ++.. +. .+++|++|++++|.....+|..+ .
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 4556666666666 5553 2222 6666666666543 2222 22 46777777777774334566655 6
Q ss_pred ccccccEEeccCCCCcccchhhhcC-----ccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccc
Q 041843 487 KLVSLQLLDISYTSVTGLPEGLKAL-----VNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVN 561 (800)
Q Consensus 487 ~L~~L~~L~L~~~~i~~lp~~i~~l-----~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 561 (800)
.+++|++|++++|.++.+|..++.+ ++|++|++++|. +..+++..++++++|++|++++|.+.+.. .
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~ 190 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGER-------G 190 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHH-------H
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcch-------H
Confidence 7777777777777777766666665 677777777664 35555444677777777777777654210 1
Q ss_pred hHHHh--hCCCCCcEEEEEeccchhHHHhhhcc-cccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEE
Q 041843 562 VAEEL--LGLKYLEVLEITFRSFEAYQTFLSSQ-KLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLK 638 (800)
Q Consensus 562 ~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~-~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~ 638 (800)
.+..+ ..+++|+.|+++.|.+..+....... ...+.++.|+++++......+...+..+++|++|++++|... .+|
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence 23344 66777777777777665433221110 111233333333332222221123334555666666655433 121
Q ss_pred eccccccccCCCCcCCCCccEEeeecCCCCCCChhhhcCCCCcEEEEecC
Q 041843 639 IDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTFLVFAPNLKSISVRDC 688 (800)
Q Consensus 639 ~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~~ 688 (800)
..+ +++|+.|+++++ .++.++.+..+++|++|+++++
T Consensus 270 ~~~------------~~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 270 KGL------------PAKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp SSC------------CSEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTC
T ss_pred hhc------------cCCceEEECCCC-CCCCChhHhhCCCCCEEeccCC
Confidence 110 145555666555 3444444555555555555554
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.3e-18 Score=192.42 Aligned_cols=211 Identities=17% Similarity=0.172 Sum_probs=104.5
Q ss_pred cceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEecc
Q 041843 420 MGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDIS 497 (800)
Q Consensus 420 ~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~ 497 (800)
+++.|++++|.+..++ .+..+++|++|++++|.+.+.++ |..+++|++|+|++| .+..+|. .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEECc
Confidence 4555555555554443 24555555555555555544443 455555555555555 3443332 2455555555
Q ss_pred CCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhh-CCCCCcEEE
Q 041843 498 YTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELL-GLKYLEVLE 576 (800)
Q Consensus 498 ~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~ 576 (800)
+|.++.+|.. .+++|+.|++++|.. ..+++..++++++|++|++++|.+.. ..+..+. .+++|+.|+
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~---------~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDT---------VNFAELAASSDTLEHLN 175 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCC-CSGGGBCGGGGSSEEEEECTTSCCCE---------EEGGGGGGGTTTCCEEE
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCC-CCCCchhhcCCCCCCEEECCCCCCCC---------cChHHHhhhCCcccEEe
Confidence 5555554332 344555555554432 33322224555555555555554443 2233332 445555555
Q ss_pred EEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCC
Q 041843 577 ITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRS 656 (800)
Q Consensus 577 l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 656 (800)
++.|.+..+ .....+++|+.|++++|.... +++.+. .+++
T Consensus 176 Ls~N~l~~~-----------------------------~~~~~l~~L~~L~Ls~N~l~~-~~~~~~----------~l~~ 215 (487)
T 3oja_A 176 LQYNFIYDV-----------------------------KGQVVFAKLKTLDLSSNKLAF-MGPEFQ----------SAAG 215 (487)
T ss_dssp CTTSCCCEE-----------------------------ECCCCCTTCCEEECCSSCCCE-ECGGGG----------GGTT
T ss_pred cCCCccccc-----------------------------cccccCCCCCEEECCCCCCCC-CCHhHc----------CCCC
Confidence 554443321 112235667777776665332 333322 3566
Q ss_pred ccEEeeecCCCCCCCh-hhhcCCCCcEEEEecCcc
Q 041843 657 LEEVTVDNCGNLKHLT-FLVFAPNLKSISVRDCDD 690 (800)
Q Consensus 657 L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~~~~ 690 (800)
|+.|++++| .++.+| .+..+++|+.|++++|+.
T Consensus 216 L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 216 VTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred ccEEEecCC-cCcccchhhccCCCCCEEEcCCCCC
Confidence 777777666 344433 355666677777766653
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=1.6e-17 Score=170.63 Aligned_cols=201 Identities=20% Similarity=0.186 Sum_probs=155.5
Q ss_pred ccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEE
Q 041843 415 VRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLL 494 (800)
Q Consensus 415 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L 494 (800)
+..+++++.++++++.+..+|... .++++.|++++|.+..+++..|..+++|++|++++| .+..+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence 345677889999999998888532 278999999999999888888899999999999999 67777754 789999999
Q ss_pred eccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcE
Q 041843 495 DISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEV 574 (800)
Q Consensus 495 ~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 574 (800)
++++|.++.+|..+..+++|++|++++|. +..+|++.+.++++|++|++++|.+.. .....+..+++|+.
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~---------~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT---------LPPGLLTPTPKLEK 152 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCC---------CCTTTTTTCTTCCE
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCc---------cChhhcccccCCCE
Confidence 99999999999889999999999999775 577887778999999999999998765 33445677888888
Q ss_pred EEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCC
Q 041843 575 LEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVF 654 (800)
Q Consensus 575 L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~ 654 (800)
|+++.|.+..++ ...+..+++|+.|++++|... .+|..+ ...
T Consensus 153 L~L~~N~l~~l~---------------------------~~~~~~l~~L~~L~L~~N~l~-~ip~~~----------~~~ 194 (290)
T 1p9a_G 153 LSLANNNLTELP---------------------------AGLLNGLENLDTLLLQENSLY-TIPKGF----------FGS 194 (290)
T ss_dssp EECTTSCCSCCC---------------------------TTTTTTCTTCCEEECCSSCCC-CCCTTT----------TTT
T ss_pred EECCCCcCCccC---------------------------HHHhcCcCCCCEEECCCCcCC-ccChhh----------ccc
Confidence 888777654321 134566788888888887643 233222 234
Q ss_pred CCccEEeeecCC
Q 041843 655 RSLEEVTVDNCG 666 (800)
Q Consensus 655 ~~L~~L~l~~c~ 666 (800)
.+|+.|.+++++
T Consensus 195 ~~L~~l~L~~Np 206 (290)
T 1p9a_G 195 HLLPFAFLHGNP 206 (290)
T ss_dssp CCCSEEECCSCC
T ss_pred ccCCeEEeCCCC
Confidence 677777777653
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=7.1e-18 Score=175.06 Aligned_cols=127 Identities=24% Similarity=0.372 Sum_probs=82.6
Q ss_pred cccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEe
Q 041843 416 RGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLD 495 (800)
Q Consensus 416 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~ 495 (800)
..+++++.|++.++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+| .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEE
Confidence 3456677777777777666666667777777777777666665 566777777777776 455554 466667777777
Q ss_pred ccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCC
Q 041843 496 ISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVG 550 (800)
Q Consensus 496 L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 550 (800)
+++|.++.+|. +..+++|++|++++|. +..++. ++++++|++|++++|.+.
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCC
Confidence 77776666653 6666666777666653 345544 566666666666666554
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=1.3e-17 Score=170.52 Aligned_cols=218 Identities=21% Similarity=0.219 Sum_probs=151.9
Q ss_pred EEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccc
Q 041843 400 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM 477 (800)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~ 477 (800)
.+...+..+.++|..+. .+++.|++++|.+..++ .+.++++|++|++++|.+..+++..|..+++|++|++++| .
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-P 87 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-c
Confidence 34455566777776554 57888999999887776 4788889999999999888888877888899999999988 4
Q ss_pred cccc-cccccccccccEEeccCCCCcccch-hhhcCccCceecccccccccc--cchhhhCCCCCCcEEEeeecCCCCCC
Q 041843 478 LRQL-PTGISKLVSLQLLDISYTSVTGLPE-GLKALVNLKCLNLDWADELVE--VPQQLLSNFSRLRVLRMFATGVGSYG 553 (800)
Q Consensus 478 ~~~l-p~~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~--lp~~~~~~L~~L~~L~l~~~~~~~~~ 553 (800)
+..+ |..+.++++|++|++++|.+..++. .++.+++|++|++++|.. .. +|.. ++++++|++|++++|.+....
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-QSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC-CCCCCCGG-GGGCTTCCEEECCSSCCCEEC
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcc-ceecCchh-hccCCCCCEEECCCCCCCcCC
Confidence 5444 4678888999999999998888765 588888999999987754 44 4555 788899999999888776421
Q ss_pred cccccccchHHHhhCCCCCc-EEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccC
Q 041843 554 RFSSRYVNVAEELLGLKYLE-VLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCD 632 (800)
Q Consensus 554 ~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 632 (800)
. .....+..++.|. .|+++.|.+..+.. ..+ ...+|+.|++++|.
T Consensus 166 ~------~~~~~l~~L~~l~l~L~ls~n~l~~~~~---------------------------~~~-~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 166 C------TDLRVLHQMPLLNLSLDLSLNPMNFIQP---------------------------GAF-KEIRLKELALDTNQ 211 (276)
T ss_dssp G------GGGHHHHTCTTCCEEEECCSSCCCEECT---------------------------TSS-CSCCEEEEECCSSC
T ss_pred H------HHhhhhhhccccceeeecCCCcccccCc---------------------------ccc-CCCcccEEECCCCc
Confidence 0 2334444455444 67777666543221 112 22367888888776
Q ss_pred CcceEEeccccccccCCCCcCCCCccEEeeecCC
Q 041843 633 WIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCG 666 (800)
Q Consensus 633 ~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 666 (800)
.. .++.... ..+++|+.|++++++
T Consensus 212 l~-~~~~~~~---------~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 212 LK-SVPDGIF---------DRLTSLQKIWLHTNP 235 (276)
T ss_dssp CS-CCCTTTT---------TTCCSCCEEECCSSC
T ss_pred ee-ecCHhHh---------cccccccEEEccCCc
Confidence 43 2232221 246788888887653
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=4e-18 Score=178.04 Aligned_cols=267 Identities=16% Similarity=0.144 Sum_probs=196.4
Q ss_pred ceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccC
Q 041843 421 GRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISY 498 (800)
Q Consensus 421 l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~ 498 (800)
+...+++.+.+...+ -+..+++|++|++++|.++.+++..|..+++|++|++++| .+...+. +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcC
Confidence 344455555553332 1456789999999999999998878999999999999999 5665554 89999999999999
Q ss_pred CCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEE
Q 041843 499 TSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEIT 578 (800)
Q Consensus 499 ~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 578 (800)
|.++.+| ..++|++|++++|. +..++. ..+++|++|++++|.+.. ..+..+..+++|+.|+++
T Consensus 90 n~l~~l~----~~~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~~---------~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 90 NYVQELL----VGPSIETLHAANNN-ISRVSC---SRGQGKKNIYLANNKITM---------LRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp SEEEEEE----ECTTCCEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCCS---------GGGBCTGGGSSEEEEECT
T ss_pred Ccccccc----CCCCcCEEECCCCc-cCCcCc---cccCCCCEEECCCCCCCC---------ccchhhhccCCCCEEECC
Confidence 9998877 34899999999875 466664 357899999999998875 334466778889999988
Q ss_pred eccchhHHHhhhcccccccceecccccccCCccccccCc-CCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCc
Q 041843 579 FRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADL-ADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSL 657 (800)
Q Consensus 579 ~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L 657 (800)
.|.+.... +..+ ..+++|++|++++|.... ++.. ..+++|
T Consensus 153 ~N~l~~~~---------------------------~~~~~~~l~~L~~L~L~~N~l~~-~~~~-----------~~l~~L 193 (317)
T 3o53_A 153 LNEIDTVN---------------------------FAELAASSDTLEHLNLQYNFIYD-VKGQ-----------VVFAKL 193 (317)
T ss_dssp TSCCCEEE---------------------------GGGGGGGTTTCCEEECTTSCCCE-EECC-----------CCCTTC
T ss_pred CCCCCccc---------------------------HHHHhhccCcCCEEECCCCcCcc-cccc-----------cccccC
Confidence 77655321 1122 357899999999997544 2211 137899
Q ss_pred cEEeeecCCCCCCC-hhhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcccc-cccCCCC
Q 041843 658 EEVTVDNCGNLKHL-TFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRL-KSIYWKP 735 (800)
Q Consensus 658 ~~L~l~~c~~l~~l-~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~ 735 (800)
+.|++++| .++.+ +.+..+++|++|++++|. ++.++. ....+++|+.|++.+++-. ..++...
T Consensus 194 ~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~-------------~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 194 KTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEK-------------ALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp CEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECT-------------TCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred CEEECCCC-cCCcchhhhcccCcccEEECcCCc-ccchhh-------------HhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 99999998 45555 457889999999999985 333321 3456789999999986543 2333444
Q ss_pred CCCCCcceEeecCCCCCCCCCCCCC
Q 041843 736 LPLPRLKELTVVDCDSLEKLPLDSN 760 (800)
Q Consensus 736 ~~~~~L~~L~l~~c~~L~~L~~~~n 760 (800)
..++.|+.|++.+++.++..+....
T Consensus 259 ~~~~~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 259 SKNQRVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp HTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred hccccceEEECCCchhccCCchhcc
Confidence 5678899999988887776655433
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=1.6e-17 Score=165.90 Aligned_cols=128 Identities=15% Similarity=0.346 Sum_probs=63.0
Q ss_pred cceEEEccccccCCCCC--CCCCCcceEEEeecCC-CcccccccccCCCCCcEEEccC-cccccccc-ccccccccccEE
Q 041843 420 MGRRLSLMKNSIGNLPT--VPTCPHLLTLFLNDNP-LRTITGGFFQSMPCLTVLKMSD-NIMLRQLP-TGISKLVSLQLL 494 (800)
Q Consensus 420 ~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~Ls~-~~~~~~lp-~~i~~L~~L~~L 494 (800)
+++.|++++|.+..++. +.++++|++|++++|. ++.+++..|.++++|++|++++ | .+..+| ..+.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEE
Confidence 45555555555544442 4455555555555554 5555544455555555555554 3 333433 234455555555
Q ss_pred eccCCCCcccchhhhcCccCc---eecccccccccccchhhhCCCCCCc-EEEeeecCC
Q 041843 495 DISYTSVTGLPEGLKALVNLK---CLNLDWADELVEVPQQLLSNFSRLR-VLRMFATGV 549 (800)
Q Consensus 495 ~L~~~~i~~lp~~i~~l~~L~---~L~l~~~~~l~~lp~~~~~~L~~L~-~L~l~~~~~ 549 (800)
++++|.++.+|. ++.+.+|+ +|++++|..+..+|...+.++++|+ +|++++|.+
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 555555555544 44444444 5555544234444444444555555 555544443
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=1.8e-17 Score=165.49 Aligned_cols=140 Identities=24% Similarity=0.306 Sum_probs=98.2
Q ss_pred ccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccc-cccccccccEEeccC-CCCcccch-
Q 041843 430 SIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPT-GISKLVSLQLLDISY-TSVTGLPE- 506 (800)
Q Consensus 430 ~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~-~~i~~lp~- 506 (800)
.+..+|. -.++|++|++++|.++.+++..|..+++|++|++++|..+..+|. .+.++++|++|++++ |.++.+|.
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 3666666 334788888888888888887788888888888888843666654 677888888888887 78888764
Q ss_pred hhhcCccCceecccccccccccchhhhCCCCCCc---EEEeeec-CCCCCCcccccccchHHHhhCCCCCc-EEEEEecc
Q 041843 507 GLKALVNLKCLNLDWADELVEVPQQLLSNFSRLR---VLRMFAT-GVGSYGRFSSRYVNVAEELLGLKYLE-VLEITFRS 581 (800)
Q Consensus 507 ~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~ 581 (800)
.+..+++|++|++++|. +..+|. ++.+++|+ +|++++| .+.. .....+.++++|+ .|+++.|.
T Consensus 100 ~f~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~---------i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDNPYMTS---------IPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp SEECCTTCCEEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESCTTCCE---------ECTTTTTTTBSSEEEEECCSCC
T ss_pred HhCCCCCCCEEeCCCCC-Cccccc--cccccccccccEEECCCCcchhh---------cCcccccchhcceeEEEcCCCC
Confidence 46778888888888765 456775 66777777 7777777 5543 2223355566666 66665554
Q ss_pred ch
Q 041843 582 FE 583 (800)
Q Consensus 582 ~~ 583 (800)
+.
T Consensus 168 l~ 169 (239)
T 2xwt_C 168 FT 169 (239)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=4.5e-17 Score=169.04 Aligned_cols=166 Identities=21% Similarity=0.334 Sum_probs=121.2
Q ss_pred ccEEEEcCCCccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccc
Q 041843 398 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM 477 (800)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~ 477 (800)
-+.+...+..+..++ .+..+++++.|++++|.+..++.+..+++|++|++++|.++.++. +..+++|++|++++| .
T Consensus 43 L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~ 118 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTST-Q 118 (308)
T ss_dssp CCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTS-C
T ss_pred cCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCC-C
Confidence 345666666677664 577777888888888888777777788888888888888777653 677888888888888 5
Q ss_pred cccccccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccc
Q 041843 478 LRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSS 557 (800)
Q Consensus 478 ~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~ 557 (800)
+..+|. +..+++|++|++++|.++.+|. ++.+++|++|++++|. +..++. +.++++|++|++++|.+...
T Consensus 119 l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~----- 188 (308)
T 1h6u_A 119 ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKISDI----- 188 (308)
T ss_dssp CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCC-----
T ss_pred CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccCcC-----
Confidence 666664 7778888888888888877765 7778888888888764 456665 67788888888887776531
Q ss_pred cccchHHHhhCCCCCcEEEEEeccch
Q 041843 558 RYVNVAEELLGLKYLEVLEITFRSFE 583 (800)
Q Consensus 558 ~~~~~~~~l~~l~~L~~L~l~~~~~~ 583 (800)
+ .+..+++|+.|+++.|.+.
T Consensus 189 -----~-~l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 189 -----S-PLASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp -----G-GGGGCTTCCEEECTTSCCC
T ss_pred -----h-hhcCCCCCCEEEccCCccC
Confidence 1 2666777777777766554
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=5.2e-17 Score=165.35 Aligned_cols=198 Identities=20% Similarity=0.271 Sum_probs=146.7
Q ss_pred cceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccccc-ccccccccEEeccC
Q 041843 420 MGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDISY 498 (800)
Q Consensus 420 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~~L~L~~ 498 (800)
..+.++++++.+..+|... .++|+.|++++|.+..+++..|..+++|++|++++| .+..+|.. +.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 4568899999998888522 268999999999999998877899999999999999 67777765 47899999999999
Q ss_pred CCCcccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEE
Q 041843 499 TSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEI 577 (800)
Q Consensus 499 ~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 577 (800)
|.++.+|.. +..+++|++|++++|. +..+|+..++++++|++|++++|.+.. .....+..+++|+.|++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQS---------LPKGVFDKLTSLKELRL 164 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC---------CCTTTTTTCTTCCEEEC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCc---------cCHhHccCCcccceeEe
Confidence 999987754 5889999999999775 577777668899999999999987764 23334677788888888
Q ss_pred EeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCc
Q 041843 578 TFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSL 657 (800)
Q Consensus 578 ~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L 657 (800)
+.|.+..++ ...+..+++|++|++++|.... ++.... ..+++|
T Consensus 165 ~~n~l~~~~---------------------------~~~~~~l~~L~~L~L~~N~l~~-~~~~~~---------~~l~~L 207 (270)
T 2o6q_A 165 YNNQLKRVP---------------------------EGAFDKLTELKTLKLDNNQLKR-VPEGAF---------DSLEKL 207 (270)
T ss_dssp CSSCCSCCC---------------------------TTTTTTCTTCCEEECCSSCCSC-CCTTTT---------TTCTTC
T ss_pred cCCcCcEeC---------------------------hhHhccCCCcCEEECCCCcCCc-CCHHHh---------ccccCC
Confidence 776544321 1335667788888888775432 222211 235667
Q ss_pred cEEeeecCC
Q 041843 658 EEVTVDNCG 666 (800)
Q Consensus 658 ~~L~l~~c~ 666 (800)
+.|++++++
T Consensus 208 ~~L~l~~N~ 216 (270)
T 2o6q_A 208 KMLQLQENP 216 (270)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 777776653
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=1e-17 Score=170.68 Aligned_cols=156 Identities=22% Similarity=0.308 Sum_probs=119.8
Q ss_pred ccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccc-cccccccccE
Q 041843 415 VRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPT-GISKLVSLQL 493 (800)
Q Consensus 415 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~ 493 (800)
...+.+++.|.+.++.+..++.+..+++|++|++++|.+..++ .+..+++|++|++++| .+..+|. .++++++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence 4456778888888888888888888888888888888887764 3778888888888888 5555554 4688888888
Q ss_pred EeccCCCCcccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCC
Q 041843 494 LDISYTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYL 572 (800)
Q Consensus 494 L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L 572 (800)
|++++|.++.+|.. ++.+++|++|++++|. +..+|+..++++++|++|++++|.+.. ..+..+..+++|
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~l~~L 183 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQS---------LPEGVFDKLTQL 183 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC---------CCTTTTTTCTTC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCc---------cCHHHhcCCccC
Confidence 88888888887654 6788888888888774 567777667888888888888887764 333445677777
Q ss_pred cEEEEEeccch
Q 041843 573 EVLEITFRSFE 583 (800)
Q Consensus 573 ~~L~l~~~~~~ 583 (800)
+.|+++.|.+.
T Consensus 184 ~~L~L~~N~l~ 194 (272)
T 3rfs_A 184 KDLRLYQNQLK 194 (272)
T ss_dssp CEEECCSSCCS
T ss_pred CEEECCCCcCC
Confidence 77777766554
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=6.5e-17 Score=165.41 Aligned_cols=216 Identities=20% Similarity=0.197 Sum_probs=166.1
Q ss_pred EEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccc-ccccccccccEEeccCCCCc
Q 041843 424 LSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLP-TGISKLVSLQLLDISYTSVT 502 (800)
Q Consensus 424 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~i~ 502 (800)
+.-.+..+..+|... .++|++|++++|.++.+++..|..+++|++|++++| .+..++ ..+.++++|++|++++|.++
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccC
Confidence 445556666777522 267999999999999999877999999999999999 566655 57899999999999999999
Q ss_pred ccc-hhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEecc
Q 041843 503 GLP-EGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRS 581 (800)
Q Consensus 503 ~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 581 (800)
.++ ..+..+++|++|++++|. +..++...++++++|++|++++|.+... ..+..+..+++|+.|+++.|.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSF--------KLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCC--------CCCGGGGGCTTCCEEECCSSC
T ss_pred ccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCcccee--------cCchhhccCCCCCEEECCCCC
Confidence 976 568999999999999875 5666665589999999999999987642 246788899999999999887
Q ss_pred chhHHHhhhcccccccceecccccccCCccccccCcCCcccCc----eEEeeccCCcceEEeccccccccCCCCcCCCCc
Q 041843 582 FEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLN----TLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSL 657 (800)
Q Consensus 582 ~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L 657 (800)
+..+.. ..+..+++|+ +|++++|.... ++... ....+|
T Consensus 161 l~~~~~---------------------------~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~----------~~~~~L 202 (276)
T 2z62_A 161 IQSIYC---------------------------TDLRVLHQMPLLNLSLDLSLNPMNF-IQPGA----------FKEIRL 202 (276)
T ss_dssp CCEECG---------------------------GGGHHHHTCTTCCEEEECCSSCCCE-ECTTS----------SCSCCE
T ss_pred CCcCCH---------------------------HHhhhhhhccccceeeecCCCcccc-cCccc----------cCCCcc
Confidence 654321 1233334444 78998887543 33222 234589
Q ss_pred cEEeeecCCCCCCChh--hhcCCCCcEEEEecCc
Q 041843 658 EEVTVDNCGNLKHLTF--LVFAPNLKSISVRDCD 689 (800)
Q Consensus 658 ~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~~~ 689 (800)
+.|+++++ .++.++. +..+++|+.|++++++
T Consensus 203 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 203 KELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 99999998 4666654 5789999999999765
No 79
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.71 E-value=5.5e-16 Score=164.71 Aligned_cols=291 Identities=14% Similarity=0.089 Sum_probs=178.1
Q ss_pred CCcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCcc------CHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL------QLEKIQE 134 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~ 134 (800)
+..||||+++++++.+++..+ +++.|+|++|+|||||+++++++. . ++|+++.... +...+..
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~---~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY---PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC---SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC---CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHH
Confidence 467999999999999988764 799999999999999999998875 1 6788775443 5666666
Q ss_pred HHHHHhCCC--------------C--CCCCCCCHHHHHHHHHHHhcC-CceEEEEccccchhh---------hhhcCCc-
Q 041843 135 TIGKKIGLY--------------T--DSWKSKSLEEKAQDIFKTLSK-KKFALLLDDLWERVD---------LKKIGVP- 187 (800)
Q Consensus 135 ~i~~~l~~~--------------~--~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~~---------~~~~~~~- 187 (800)
.+...+... . .........+..+.+.+.... ++++||+||++...+ +..+...
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 666654320 0 000124556666666655543 499999999965321 2222110
Q ss_pred -CCCCcEEEEEeCCccccc----------cc-C-ccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhC
Q 041843 188 -LPKNSAVVFTTRFVDVCG----------GM-E-ARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECG 254 (800)
Q Consensus 188 -~~~~s~iivTtR~~~~~~----------~~-~-~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 254 (800)
-..+.++|+|++...... .. + ....+.+.+|+.+|+.+++...+.......+ .+.+.++++.++
T Consensus 160 ~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tg 236 (350)
T 2qen_A 160 DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLD 236 (350)
T ss_dssp HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHT
T ss_pred HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhC
Confidence 113788999988643211 01 1 1247899999999999999876533221112 567899999999
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhccCCChhHHHHHHhhhccCCChhhHHHHHhHhccCCCCcccchHHH
Q 041843 255 GLPLALIIIGRAMAYKKTPEEWRYAIEVLRRSASEFAGLGKEVYSLLKFSYDCLPNDAIRSCFLYCCLYPEDYSIDKRDL 334 (800)
Q Consensus 255 g~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~l~~~~fp~~~~i~~~~l 334 (800)
|+|+++..++..+....+...+.. .+...... .....+.. +.+ + ++ ..+..+..+|. . .++...+
T Consensus 237 G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~l~~---l~~-~-~~-~~~~~l~~la~-g---~~~~~~l 301 (350)
T 2qen_A 237 GIPGWLVVFGVEYLRNGDFGRAMK---RTLEVAKG--LIMGELEE---LRR-R-SP-RYVDILRAIAL-G---YNRWSLI 301 (350)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHH--HHHHHHHH---HHH-H-CH-HHHHHHHHHHT-T---CCSHHHH
T ss_pred CCHHHHHHHHHHHhccccHhHHHH---HHHHHHHH--HHHHHHHH---HHh-C-Ch-hHHHHHHHHHh-C---CCCHHHH
Confidence 999999999876533223322211 11110000 00011111 111 2 55 67888888887 2 2344444
Q ss_pred HHHHHhcCCccccccchhhhHHHHHHHHHHhcccccccCCcEEE-ehHHHHHH
Q 041843 335 IDCWMCEGFLEEDKFGTQNRGSHIVTTLVRACLLEEVEDDQVKM-HDVVRDMA 386 (800)
Q Consensus 335 i~~w~a~g~i~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~-h~l~~~~~ 386 (800)
........ - .........+++.|.+.+++... .+.|.+ |++++.+.
T Consensus 302 ~~~~~~~~-~----~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 302 RDYLAVKG-T----KIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVL 348 (350)
T ss_dssp HHHHHHTT-C----CCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHH
T ss_pred HHHHHHHh-C----CCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHH
Confidence 43322110 0 01224567789999999999876 355655 67777664
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=6.2e-18 Score=187.07 Aligned_cols=237 Identities=18% Similarity=0.181 Sum_probs=179.9
Q ss_pred CCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccCCCCcccchhhhcCccCcee
Q 041843 438 PTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCL 517 (800)
Q Consensus 438 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 517 (800)
..+++|++|++++|.+..+++..|..+++|++|+|++| .+...+. ++.+++|++|+|++|.++.+|.. ++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEE
Confidence 45669999999999999999888999999999999999 5655554 99999999999999999988743 899999
Q ss_pred cccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhccccccc
Q 041843 518 NLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSC 597 (800)
Q Consensus 518 ~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~ 597 (800)
++++|. +..+|. ..+++|++|++++|.+.. ..+..++++++|+.|+++.|.+....
T Consensus 105 ~L~~N~-l~~~~~---~~l~~L~~L~L~~N~l~~---------~~~~~~~~l~~L~~L~Ls~N~l~~~~----------- 160 (487)
T 3oja_A 105 HAANNN-ISRVSC---SRGQGKKNIYLANNKITM---------LRDLDEGCRSRVQYLDLKLNEIDTVN----------- 160 (487)
T ss_dssp ECCSSC-CCCEEE---CCCSSCEEEECCSSCCCS---------GGGBCGGGGSSEEEEECTTSCCCEEE-----------
T ss_pred ECcCCc-CCCCCc---cccCCCCEEECCCCCCCC---------CCchhhcCCCCCCEEECCCCCCCCcC-----------
Confidence 999886 466664 357899999999998875 44556778899999999887765321
Q ss_pred ceecccccccCCccccccCcC-CcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCC-hhhh
Q 041843 598 TQALFLHEFCREESIGVADLA-DLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHL-TFLV 675 (800)
Q Consensus 598 l~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l-~~l~ 675 (800)
+..+. .+++|+.|++++|.... ++.. ..+++|+.|++++| .++.+ +.+.
T Consensus 161 ----------------~~~l~~~l~~L~~L~Ls~N~l~~-~~~~-----------~~l~~L~~L~Ls~N-~l~~~~~~~~ 211 (487)
T 3oja_A 161 ----------------FAELAASSDTLEHLNLQYNFIYD-VKGQ-----------VVFAKLKTLDLSSN-KLAFMGPEFQ 211 (487)
T ss_dssp ----------------GGGGGGGTTTCCEEECTTSCCCE-EECC-----------CCCTTCCEEECCSS-CCCEECGGGG
T ss_pred ----------------hHHHhhhCCcccEEecCCCcccc-cccc-----------ccCCCCCEEECCCC-CCCCCCHhHc
Confidence 12233 57899999999998554 2211 14789999999998 45554 4578
Q ss_pred cCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcccc-cccCCCCCCCCCcceEeec
Q 041843 676 FAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRL-KSIYWKPLPLPRLKELTVV 747 (800)
Q Consensus 676 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~ 747 (800)
.+++|+.|++++|. +..++ .....+++|+.|++.+++-. ..++.....++.|+.+.+.
T Consensus 212 ~l~~L~~L~Ls~N~-l~~lp-------------~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 212 SAAGVTWISLRNNK-LVLIE-------------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGTTCSEEECTTSC-CCEEC-------------TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCccEEEecCCc-Ccccc-------------hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 89999999999976 33222 13456789999999986543 2333333456667766665
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=4.8e-17 Score=165.72 Aligned_cols=174 Identities=22% Similarity=0.383 Sum_probs=149.9
Q ss_pred ccEEEEcCCCccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccc
Q 041843 398 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM 477 (800)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~ 477 (800)
-+.+...+..+..+ +.+..+++++.|++++|.+..++.+..+++|++|++++|.++.+++..|..+++|++|++++| .
T Consensus 43 L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 120 (272)
T 3rfs_A 43 IDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-Q 120 (272)
T ss_dssp CCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-C
T ss_pred eeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-c
Confidence 34566677777776 568889999999999999999999999999999999999999999988999999999999999 5
Q ss_pred cccccc-cccccccccEEeccCCCCcccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcc
Q 041843 478 LRQLPT-GISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRF 555 (800)
Q Consensus 478 ~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~ 555 (800)
+..+|. .++++++|++|++++|.++.+|.. ++.+++|++|++++|. +..+|+..++++++|++|++++|.+..
T Consensus 121 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~---- 195 (272)
T 3rfs_A 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKS---- 195 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC----
T ss_pred CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCc----
Confidence 666654 478999999999999999998765 6899999999999885 577887778999999999999998875
Q ss_pred cccccchHHHhhCCCCCcEEEEEeccch
Q 041843 556 SSRYVNVAEELLGLKYLEVLEITFRSFE 583 (800)
Q Consensus 556 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 583 (800)
..+..+..+++|+.|+++.|.+.
T Consensus 196 -----~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 196 -----VPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp -----CCTTTTTTCTTCCEEECCSSCBC
T ss_pred -----cCHHHHhCCcCCCEEEccCCCcc
Confidence 34455788999999999877643
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=7.6e-17 Score=165.50 Aligned_cols=193 Identities=25% Similarity=0.319 Sum_probs=163.4
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
..+...+.++..+|..+. +.++.|++++|.+..++ .+..+++|++|++++|.++.+++. ..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N- 87 (290)
T 1p9a_G 13 LEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHN- 87 (290)
T ss_dssp CEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSS-
T ss_pred cEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCC-
Confidence 456677788888987765 68999999999998776 489999999999999999988764 78999999999999
Q ss_pred ccccccccccccccccEEeccCCCCcccc-hhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcc
Q 041843 477 MLRQLPTGISKLVSLQLLDISYTSVTGLP-EGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRF 555 (800)
Q Consensus 477 ~~~~lp~~i~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~ 555 (800)
.+..+|..+..+++|++|++++|+++.+| ..+..+++|++|++++|. +..+|.+++..+++|++|++++|.+..
T Consensus 88 ~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~---- 162 (290)
T 1p9a_G 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTE---- 162 (290)
T ss_dssp CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSC----
T ss_pred cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCc----
Confidence 88899999999999999999999999987 468999999999999875 678888888999999999999998875
Q ss_pred cccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCc
Q 041843 556 SSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWI 634 (800)
Q Consensus 556 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 634 (800)
.....+..+++|+.|+++.|.+..++ ..+..+++|+.|++++|+..
T Consensus 163 -----l~~~~~~~l~~L~~L~L~~N~l~~ip----------------------------~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 -----LPAGLLNGLENLDTLLLQENSLYTIP----------------------------KGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp -----CCTTTTTTCTTCCEEECCSSCCCCCC----------------------------TTTTTTCCCSEEECCSCCBC
T ss_pred -----cCHHHhcCcCCCCEEECCCCcCCccC----------------------------hhhcccccCCeEEeCCCCcc
Confidence 33445678999999999988765432 12344568899999988754
No 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=2.1e-18 Score=190.92 Aligned_cols=260 Identities=16% Similarity=0.080 Sum_probs=129.1
Q ss_pred ccceEEEccccccCCCC--C-CCCCCcceEEEeecCCCcccc----cccccCCCCCcEEEccCcccccccccccc-ccc-
Q 041843 419 EMGRRLSLMKNSIGNLP--T-VPTCPHLLTLFLNDNPLRTIT----GGFFQSMPCLTVLKMSDNIMLRQLPTGIS-KLV- 489 (800)
Q Consensus 419 ~~l~~l~l~~~~~~~l~--~-~~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~-~L~- 489 (800)
++++.|+++++.+...+ . +..+++|++|++++|.+.... +..+..+++|++|++++|......+..+. .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 35666666666654332 1 455666777777777665321 22355667777777777632222222222 233
Q ss_pred ---cccEEeccCCCCc-----ccchhhhcCccCceecccccccccc----cchhhhCCCCCCcEEEeeecCCCCCCcccc
Q 041843 490 ---SLQLLDISYTSVT-----GLPEGLKALVNLKCLNLDWADELVE----VPQQLLSNFSRLRVLRMFATGVGSYGRFSS 557 (800)
Q Consensus 490 ---~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~l~~----lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~ 557 (800)
+|++|++++|.++ .+|..+..+++|++|++++|..-.. +........++|++|++++|.+....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---- 158 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS---- 158 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG----
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH----
Confidence 5777777777666 2566666677777777776653211 11121223456777777666554310
Q ss_pred cccchHHHhhCCCCCcEEEEEeccchhHHH--hhhcc-cccccceecccccccCCccc---cccCcCCcccCceEEeecc
Q 041843 558 RYVNVAEELLGLKYLEVLEITFRSFEAYQT--FLSSQ-KLRSCTQALFLHEFCREESI---GVADLADLEQLNTLYFRSC 631 (800)
Q Consensus 558 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~-~l~~~l~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~~ 631 (800)
.......+..+++|+.|+++.|.+..... +.... .....++.|.+.++...... -...+..+++|++|++++|
T Consensus 159 -~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 159 -CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp -HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred -HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 00234455566677777777666544221 11100 01235666666665432210 0123445566777777666
Q ss_pred CCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCC-----Ch-hhhcCCCCcEEEEecCc
Q 041843 632 DWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKH-----LT-FLVFAPNLKSISVRDCD 689 (800)
Q Consensus 632 ~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~-----l~-~l~~l~~L~~L~l~~~~ 689 (800)
.....-...+.. .....+++|++|++++| .++. ++ .+..+++|++|++++|.
T Consensus 238 ~l~~~~~~~l~~-----~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 238 KLGDVGMAELCP-----GLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp BCHHHHHHHHHH-----HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred cCChHHHHHHHH-----HHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 432210000000 00012456666666666 3443 11 23446666666666654
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=2.8e-16 Score=166.39 Aligned_cols=237 Identities=17% Similarity=0.169 Sum_probs=139.1
Q ss_pred EEEcCCCccccCccccccccceEEEccccccCCCCC--CCCCCcceEEEeecCCC-cccccccccCCCCCcEE-EccCcc
Q 041843 401 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPT--VPTCPHLLTLFLNDNPL-RTITGGFFQSMPCLTVL-KMSDNI 476 (800)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l-~~~~~~~~~~l~~L~~L-~Ls~~~ 476 (800)
+...+.+++++|..+. .+++.|++++|.+..+|. |.++++|++|+|++|.+ +.+++..|.++++|..+ .+++|
T Consensus 14 v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N- 90 (350)
T 4ay9_X 14 FLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN- 90 (350)
T ss_dssp EEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET-
T ss_pred EEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC-
Confidence 4444555566655442 355566666666665552 55566666666666654 33444455555555443 33333
Q ss_pred ccccc-cccccccccccEEeccCCCCcccch-hhhcCccCceecccccccccccchhhhCCCC-CCcEEEeeecCCCCCC
Q 041843 477 MLRQL-PTGISKLVSLQLLDISYTSVTGLPE-GLKALVNLKCLNLDWADELVEVPQQLLSNFS-RLRVLRMFATGVGSYG 553 (800)
Q Consensus 477 ~~~~l-p~~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~-~L~~L~l~~~~~~~~~ 553 (800)
.+..+ |..+..+++|++|++++|.++.+|. .+....++..|++.++..+..+|...+..+. .|++|++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-- 168 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-- 168 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--
Confidence 44444 3445556666666666666555443 2334445555555555455555554444443 35555555554432
Q ss_pred cccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCC
Q 041843 554 RFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDW 633 (800)
Q Consensus 554 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 633 (800)
++....... .++.+.+.++.....++...|..+++|+.|++++|..
T Consensus 169 --------i~~~~f~~~--------------------------~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 169 --------IHNSAFNGT--------------------------QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp --------ECTTSSTTE--------------------------EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred --------CChhhcccc--------------------------chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence 111111122 3445555555555556656788999999999999864
Q ss_pred cceEEeccccccccCCCCcCCCCccEEeeecCCCCCCChhhhcCCCCcEEEEecCc
Q 041843 634 IKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTFLVFAPNLKSISVRDCD 689 (800)
Q Consensus 634 ~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~~~ 689 (800)
. .+|. ..+.+|++|.+.++.+++.+|.+..+++|+.+++.+..
T Consensus 215 ~-~lp~------------~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 215 H-SLPS------------YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp C-CCCS------------SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred C-ccCh------------hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCCCc
Confidence 3 3332 24689999999999999999999999999999997643
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.67 E-value=1.1e-15 Score=166.42 Aligned_cols=304 Identities=12% Similarity=0.085 Sum_probs=182.1
Q ss_pred CCcccchhHHHHHHHHHh-cc---C--CCceEEEE--EcCCCCcHHHHHHHHHhhcccC--CCCC-CEEEEEEEcCccCH
Q 041843 61 EPTVVGLQSQLEQVWRCL-VQ---E--PAAGIIGL--YGMGGVGKTTLLTQINNKFVDN--PTDF-DYVIWVVVSKDLQL 129 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l-~~---~--~~~~vv~I--~G~~GiGKTtLa~~~~~~~~~~--~~~f-~~~~wv~~~~~~~~ 129 (800)
+..|+||+++++++.+.+ .. + ...+.+.| +|++|+||||||+++++..... ...+ ..++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 42 2 24567777 9999999999999999886210 0012 34678887777788
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc--CCceEEEEccccch--------hhhhhcCCc---CC-----CC
Q 041843 130 EKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLS--KKKFALLLDDLWER--------VDLKKIGVP---LP-----KN 191 (800)
Q Consensus 130 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~--------~~~~~~~~~---~~-----~~ 191 (800)
..+...++.+++..... ...+..+....+.+.+. +++++||+||++.. ..+..+... .+ .+
T Consensus 101 ~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 89999999988654221 22345566666666664 67999999999653 222222111 22 34
Q ss_pred cEEEEEeCCcccccccC---------ccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhC------CC
Q 041843 192 SAVVFTTRFVDVCGGME---------ARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECG------GL 256 (800)
Q Consensus 192 s~iivTtR~~~~~~~~~---------~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~ 256 (800)
..+|+||+.......+. ....+.+++|+.++++++|..++..... ...-..+....+++.++ |+
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCCCc
Confidence 55787887544221110 1123999999999999999876532110 01112678899999999 99
Q ss_pred hhHHHHHHHHHh-----cC---CCHHHHHHHHHHHHhhhhccCCChhHH-HHHHhhhccCCChhhHHHHHhHhccCC--C
Q 041843 257 PLALIIIGRAMA-----YK---KTPEEWRYAIEVLRRSASEFAGLGKEV-YSLLKFSYDCLPNDAIRSCFLYCCLYP--E 325 (800)
Q Consensus 257 Plai~~~~~~l~-----~~---~~~~~w~~~l~~l~~~~~~~~~~~~~i-~~~l~~sy~~L~~~~~k~c~l~~~~fp--~ 325 (800)
|..+..+..... .. -+.+.+...+.. .. ...+.-.+..|++ ..+.++..++.+. .
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~-------------~~~~~~~~~~l~~l~~-~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE-------------NEAASIQTHELEALSI-HELIILRLIAEATLGG 324 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH-------------C------CCSSSSSCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-------------HhccchHHHHHHcCCH-HHHHHHHHHHHHHhcC
Confidence 976655543221 11 122333322211 01 2334556788998 7888888787643 2
Q ss_pred CcccchHHHHHHHH--h-cCCccccccchhhhHHHHHHHHHHhcccccc-----cCCcEEEehHH
Q 041843 326 DYSIDKRDLIDCWM--C-EGFLEEDKFGTQNRGSHIVTTLVRACLLEEV-----EDDQVKMHDVV 382 (800)
Q Consensus 326 ~~~i~~~~li~~w~--a-~g~i~~~~~~~~~~~~~~~~~L~~~~ll~~~-----~~~~~~~h~l~ 382 (800)
+..+....+...+. + .-. .. ..........+++.|.+.+++... ..++|++|.+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTMY-NV-KPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHHS-CC-CCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCCccHHHHHHHHHHHHHhhc-CC-CCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 33455555444332 1 100 00 001124466789999999999764 23455566544
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=4.4e-16 Score=156.59 Aligned_cols=174 Identities=23% Similarity=0.345 Sum_probs=150.1
Q ss_pred ccEEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCc
Q 041843 398 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDN 475 (800)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~ 475 (800)
...+...+..+..+|..+. ..++.|++++|.+..++ .+.++++|++|++++|.++.+++..|..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3457778888889987765 68999999999998877 4889999999999999999999988999999999999999
Q ss_pred ccccccc-ccccccccccEEeccCCCCcccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCC
Q 041843 476 IMLRQLP-TGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYG 553 (800)
Q Consensus 476 ~~~~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~ 553 (800)
.+..+| ..+..+++|++|+|++|.++.+|.. +..+++|++|++++|. +..+|+..++++++|++|++++|.+..
T Consensus 94 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-- 169 (251)
T 3m19_A 94 -QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQS-- 169 (251)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC--
T ss_pred -cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCc--
Confidence 566665 5678999999999999999998876 5889999999999875 678888768999999999999998875
Q ss_pred cccccccchHHHhhCCCCCcEEEEEeccchh
Q 041843 554 RFSSRYVNVAEELLGLKYLEVLEITFRSFEA 584 (800)
Q Consensus 554 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 584 (800)
..+..+..+++|+.|++++|.+..
T Consensus 170 -------~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 -------VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp -------CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred -------cCHHHHhCCCCCCEEEeeCCceeC
Confidence 344567889999999999988753
No 87
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.66 E-value=4.8e-15 Score=157.88 Aligned_cols=287 Identities=14% Similarity=0.093 Sum_probs=170.2
Q ss_pred CCcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc-----cCHHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-----LQLEKIQET 135 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~ 135 (800)
+..||||+++++++.+ +.. +++.|+|++|+|||||++++++.. .. ..+|+++... .+...+...
T Consensus 12 ~~~~~gR~~el~~L~~-l~~----~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA----PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS----SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC----CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHH
Confidence 4679999999999999 654 699999999999999999999886 22 2578887643 344445444
Q ss_pred HHHHhC--------------C----CCCC----C-----CCCCHHHHHHHHHHHhcCCceEEEEccccchh-----hhhh
Q 041843 136 IGKKIG--------------L----YTDS----W-----KSKSLEEKAQDIFKTLSKKKFALLLDDLWERV-----DLKK 183 (800)
Q Consensus 136 i~~~l~--------------~----~~~~----~-----~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----~~~~ 183 (800)
+...+. . ..+. . ......+....+.+.-. ++++||+||++... ++..
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHH
Confidence 444331 0 0000 0 12234444444443322 49999999995432 2211
Q ss_pred cCCcC---CCCcEEEEEeCCccccc----------cc-Cc-cceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHH
Q 041843 184 IGVPL---PKNSAVVFTTRFVDVCG----------GM-EA-RRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQT 248 (800)
Q Consensus 184 ~~~~~---~~~s~iivTtR~~~~~~----------~~-~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 248 (800)
+...+ ..+.++|+|++...... .. +. ...+.+.+|+.+|+.+++...+.......+ + ...
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~-~~~ 234 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK----D-YEV 234 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC----C-HHH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC----c-HHH
Confidence 11111 13678999999754211 11 11 257899999999999999886532221111 1 289
Q ss_pred HHHHhCCChhHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhccCCChhHHHHHHh-hhc--cCCChhhHHHHHhHhccCCC
Q 041843 249 VAKECGGLPLALIIIGRAMAYKKTPEEWRYAIEVLRRSASEFAGLGKEVYSLLK-FSY--DCLPNDAIRSCFLYCCLYPE 325 (800)
Q Consensus 249 i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~~k~c~l~~~~fp~ 325 (800)
|++.++|+|+++..++..+....+...|.. .+..... ..+...+. +.+ ..+++ ..+..+..+|. .
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~-g- 302 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAIN---QTLEYAK------KLILKEFENFLHGREIARK-RYLNIMRTLSK-C- 302 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHH---HHHHHHH------HHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT-C-
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHH---HHHHHHH------HHHHHHHHHHhhccccccH-HHHHHHHHHHc-C-
Confidence 999999999999999887654333333321 1110000 01111111 111 15666 68888888887 2
Q ss_pred CcccchHHHHHHHH-hcCCccccccchhhhHHHHHHHHHHhcccccccCCcEE-EehHHHHH
Q 041843 326 DYSIDKRDLIDCWM-CEGFLEEDKFGTQNRGSHIVTTLVRACLLEEVEDDQVK-MHDVVRDM 385 (800)
Q Consensus 326 ~~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~-~h~l~~~~ 385 (800)
. +...+..... ..|. .........+++.|.+.+++...+ +.|. .|++++++
T Consensus 303 -~--~~~~l~~~~~~~~g~-----~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~ 355 (357)
T 2fna_A 303 -G--KWSDVKRALELEEGI-----EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLA 355 (357)
T ss_dssp -B--CHHHHHHHHHHHHCS-----CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHH
T ss_pred -C--CHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHh
Confidence 1 3333332110 1121 012245677899999999998764 5566 46788765
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=9.2e-16 Score=162.44 Aligned_cols=238 Identities=16% Similarity=0.146 Sum_probs=172.1
Q ss_pred eEEEeecCCCcccccccccCCCCCcEEEccCccccccccc-cccccccccEEeccCCCCcc-cch-hhhcCccCceeccc
Q 041843 444 LTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPT-GISKLVSLQLLDISYTSVTG-LPE-GLKALVNLKCLNLD 520 (800)
Q Consensus 444 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~~~i~~-lp~-~i~~l~~L~~L~l~ 520 (800)
++++.+++.++.+|..+ .+++++|+|++| .++.+|. .|.++++|++|+|++|.+.+ +|. .+.++++|+.+...
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 67889999999998764 367999999999 7888875 58899999999999998755 665 46788888876665
Q ss_pred ccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccchhHHHhhhccccccccee
Q 041843 521 WADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQA 600 (800)
Q Consensus 521 ~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~ 600 (800)
+++.+..+|++.+.++++|++|++++|.+.... ...+....++..|++..+.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~---------~~~~~~~~~l~~l~l~~~~------------------- 139 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLP---------DVHKIHSLQKVLLDIQDNI------------------- 139 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCC---------CCTTCCBSSCEEEEEESCT-------------------
T ss_pred cCCcccccCchhhhhccccccccccccccccCC---------chhhcccchhhhhhhcccc-------------------
Confidence 566788888877899999999999999876421 1122233445566654321
Q ss_pred cccccccCCccccccCcCCc-ccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCChh--hhcC
Q 041843 601 LFLHEFCREESIGVADLADL-EQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTF--LVFA 677 (800)
Q Consensus 601 L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l 677 (800)
....++...+..+ ..++.|++++|... .++.... ...+|++|.+.++..++.++. +..+
T Consensus 140 -------~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f----------~~~~L~~l~l~~~n~l~~i~~~~f~~l 201 (350)
T 4ay9_X 140 -------NIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF----------NGTQLDELNLSDNNNLEELPNDVFHGA 201 (350)
T ss_dssp -------TCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSS----------TTEEEEEEECTTCTTCCCCCTTTTTTE
T ss_pred -------ccccccccchhhcchhhhhhcccccccc-CCChhhc----------cccchhHHhhccCCcccCCCHHHhccC
Confidence 1122222334444 46888999888643 3433322 346888999988878888874 6789
Q ss_pred CCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCcccccccCCCCCCCCCcceEeecC
Q 041843 678 PNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLKSIYWKPLPLPRLKELTVVD 748 (800)
Q Consensus 678 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 748 (800)
++|++|+|+++. ++.+ ....|..|+.|.+.++.+++.++. ...+++|+.+++.+
T Consensus 202 ~~L~~LdLs~N~-l~~l---------------p~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 202 SGPVILDISRTR-IHSL---------------PSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp ECCSEEECTTSC-CCCC---------------CSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred cccchhhcCCCC-cCcc---------------ChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 999999999875 3332 335688899999999999988885 46788999998875
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=5.7e-16 Score=155.75 Aligned_cols=176 Identities=20% Similarity=0.268 Sum_probs=147.1
Q ss_pred cceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc-cccccccccccEEeccC
Q 041843 420 MGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQLLDISY 498 (800)
Q Consensus 420 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~ 498 (800)
..+.++++++.+..+|.... ++++.|++++|.+..+++..|..+++|++|++++| .+..+ |..+.++++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCC
Confidence 45689999999999986322 78999999999999999888999999999999999 55554 55689999999999999
Q ss_pred CCCcccch-hhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEE
Q 041843 499 TSVTGLPE-GLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEI 577 (800)
Q Consensus 499 ~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 577 (800)
|.++.+|. .+..+++|++|++++|. +..+|...+.++++|++|++++|.+.. ..+..+..+++|+.|++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQS---------IPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC---------CCTTTTTTCTTCCEEEC
T ss_pred CcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCc---------cCHHHcCcCcCCCEEEC
Confidence 99999875 46899999999999875 678888878999999999999998875 33456888999999999
Q ss_pred EeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCc
Q 041843 578 TFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWI 634 (800)
Q Consensus 578 ~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 634 (800)
+.|.+..+. ...+..+++|+.|++++|...
T Consensus 163 ~~N~l~~~~---------------------------~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 163 STNQLQSVP---------------------------HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CSSCCSCCC---------------------------TTTTTTCTTCCEEECCSCCBC
T ss_pred CCCcCCccC---------------------------HHHHhCCCCCCEEEeeCCcee
Confidence 988765322 134677889999999998753
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=5.5e-16 Score=159.26 Aligned_cols=172 Identities=22% Similarity=0.340 Sum_probs=141.6
Q ss_pred ccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEE
Q 041843 415 VRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLL 494 (800)
Q Consensus 415 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L 494 (800)
...+++++.|++++|.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++| .+..+|. +..+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh-hccCCCCCEE
Confidence 44567889999999999999888899999999999999988877 789999999999999 6777664 8999999999
Q ss_pred eccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcE
Q 041843 495 DISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEV 574 (800)
Q Consensus 495 ~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 574 (800)
++++|.++.++ .+..+++|++|++++|. +..++. ++++++|++|++++|.+.. .+. +..+++|+.
T Consensus 118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~----------~~~-l~~l~~L~~ 182 (291)
T 1h6t_A 118 SLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD----------IVP-LAGLTKLQN 182 (291)
T ss_dssp ECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCC----------CGG-GTTCTTCCE
T ss_pred ECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCcccc----------chh-hcCCCccCE
Confidence 99999998874 68899999999999875 466643 7899999999999998764 222 888899999
Q ss_pred EEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCc
Q 041843 575 LEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWI 634 (800)
Q Consensus 575 L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 634 (800)
|+++.|.++.++ .+..+++|+.|++++|...
T Consensus 183 L~L~~N~i~~l~-----------------------------~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 183 LYLSKNHISDLR-----------------------------ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp EECCSSCCCBCG-----------------------------GGTTCTTCSEEEEEEEEEE
T ss_pred EECCCCcCCCCh-----------------------------hhccCCCCCEEECcCCccc
Confidence 999888765321 2566788888998887643
No 91
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=2.7e-17 Score=182.00 Aligned_cols=317 Identities=18% Similarity=0.152 Sum_probs=200.2
Q ss_pred CccccccccceEEEccccccCCC--CCC-CCCC----cceEEEeecCCCccc----ccccccCCCCCcEEEccCcccccc
Q 041843 412 PADVRGWEMGRRLSLMKNSIGNL--PTV-PTCP----HLLTLFLNDNPLRTI----TGGFFQSMPCLTVLKMSDNIMLRQ 480 (800)
Q Consensus 412 ~~~~~~~~~l~~l~l~~~~~~~l--~~~-~~~~----~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~Ls~~~~~~~ 480 (800)
+..+..+++++.|++++|.+... ..+ ..++ +|++|++++|.+... .+..+..+++|++|++++|.....
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 34455667889999999887442 111 1222 799999999988742 245578899999999999843222
Q ss_pred cccccc-----ccccccEEeccCCCCcc-----cchhhhcCccCceecccccccccccchhhh-----CCCCCCcEEEee
Q 041843 481 LPTGIS-----KLVSLQLLDISYTSVTG-----LPEGLKALVNLKCLNLDWADELVEVPQQLL-----SNFSRLRVLRMF 545 (800)
Q Consensus 481 lp~~i~-----~L~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~-----~~L~~L~~L~l~ 545 (800)
.+..+. .+.+|++|++++|.++. ++..+..+++|++|++++|.. ...+...+ ..+++|++|+++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI-NEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC-HHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc-chHHHHHHHHHHhcCCCCceEEEcc
Confidence 233333 25679999999998875 566778889999999998863 33221112 246799999999
Q ss_pred ecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccchhHHH--hhhc-ccccccceecccccccCCccc---cccCcCC
Q 041843 546 ATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQT--FLSS-QKLRSCTQALFLHEFCREESI---GVADLAD 619 (800)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~-~~l~~~l~~L~l~~~~~~~~~---~~~~l~~ 619 (800)
+|.+.... ....+..+..+++|+.|+++.|.+..... +... ..-...++.|++.++...... -...+..
T Consensus 208 ~n~l~~~~-----~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 282 (461)
T 1z7x_W 208 SCGVTSDN-----CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282 (461)
T ss_dssp TSCCBTTH-----HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHH-----HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh
Confidence 98775410 00246677888999999999998765321 1111 112457889999887532210 1134556
Q ss_pred cccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCCCCC------hhhhcCCCCcEEEEecCcchhH
Q 041843 620 LEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHL------TFLVFAPNLKSISVRDCDDMEE 693 (800)
Q Consensus 620 l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l------~~l~~l~~L~~L~l~~~~~l~~ 693 (800)
+++|++|++++|.....-+..+... .....++|+.|++++|. ++.. ..+..+++|++|++++|. +..
T Consensus 283 ~~~L~~L~Ls~n~i~~~~~~~l~~~-----l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~ 355 (461)
T 1z7x_W 283 KESLKELSLAGNELGDEGARLLCET-----LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LED 355 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHH-----HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHH
T ss_pred CCCcceEECCCCCCchHHHHHHHHH-----hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-ccc
Confidence 8899999999986532111111110 00123699999999984 4432 235678999999999985 443
Q ss_pred hhccCCCCCcCcccCccCCcCCcccEeeccCccccc-----ccCCCCCCCCCcceEeecCC
Q 041843 694 IISAGEFDDIPEMTGIISSPFAKLQHLQLGGLGRLK-----SIYWKPLPLPRLKELTVVDC 749 (800)
Q Consensus 694 i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~L~~L~l~~c 749 (800)
..... +........++|+.|++.+|. +. .++.....+++|+.|++++|
T Consensus 356 ~~~~~-------l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 356 AGVRE-------LCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHH-------HHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred ccHHH-------HHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCC
Confidence 32100 000111236789999999873 43 33333344678888888775
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=7.6e-17 Score=184.51 Aligned_cols=176 Identities=14% Similarity=0.042 Sum_probs=104.1
Q ss_pred ccccceEEEccccccCCCC------CCCCCCcceEEEeecCCCcccc----cccccCCCCCcEEEccCcccccccccccc
Q 041843 417 GWEMGRRLSLMKNSIGNLP------TVPTCPHLLTLFLNDNPLRTIT----GGFFQSMPCLTVLKMSDNIMLRQLPTGIS 486 (800)
Q Consensus 417 ~~~~l~~l~l~~~~~~~l~------~~~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~ 486 (800)
.+++++.|++++|.+.... -...+++|++|++++|.+..+. +..+..+++|++|++++| .+..+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHh
Confidence 5567888888888764322 1245678888888888776332 233567788888888887 6666777788
Q ss_pred ccccccEEeccCCCC----cccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccch
Q 041843 487 KLVSLQLLDISYTSV----TGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNV 562 (800)
Q Consensus 487 ~L~~L~~L~L~~~~i----~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 562 (800)
++++|++|+++.... ...+..+..+++|+.|++.++ ....+|.. +..+++|++|++++|.+... ..
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~~~--------~~ 310 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLETE--------DH 310 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCCHH--------HH
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCCHH--------HH
Confidence 888888888864311 123344555666666666543 22444443 56677777777777764321 22
Q ss_pred HHHhhCCCCCcEEEEEeccchhHHHhhhcccccccceeccccc
Q 041843 563 AEELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHE 605 (800)
Q Consensus 563 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~ 605 (800)
...+..+++|+.|+++ +.+... .+.......+.++.|.+.+
T Consensus 311 ~~~~~~~~~L~~L~L~-~~~~~~-~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETR-NVIGDR-GLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp HHHHTTCTTCCEEEEE-GGGHHH-HHHHHHHHCTTCCEEEEEC
T ss_pred HHHHHhCcCCCEEecc-CccCHH-HHHHHHHhCCCCCEEEeec
Confidence 2345667777777776 333221 1111112234566666663
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=8.8e-16 Score=148.01 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=131.4
Q ss_pred cccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEe
Q 041843 416 RGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLD 495 (800)
Q Consensus 416 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~ 495 (800)
..+++++.|++++|.+..+|.+..+++|++|++++|.++.++ .+..+++|++|++++|......|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 566789999999999999999999999999999999887665 388999999999999944445788899999999999
Q ss_pred ccCCCCcc-cchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcE
Q 041843 496 ISYTSVTG-LPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEV 574 (800)
Q Consensus 496 L~~~~i~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 574 (800)
+++|.++. .|..++.+++|++|++++|..+..+|. +.++++|++|++++|.+.. .. .+..+++|+.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~----------~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD----------YR-GIEDFPKLNQ 185 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC----------CT-TGGGCSSCCE
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC----------hH-HhccCCCCCE
Confidence 99999987 778899999999999999876788874 8999999999999998764 22 6788999999
Q ss_pred EEEEeccchh
Q 041843 575 LEITFRSFEA 584 (800)
Q Consensus 575 L~l~~~~~~~ 584 (800)
|++++|.+..
T Consensus 186 L~l~~N~i~~ 195 (197)
T 4ezg_A 186 LYAFSQTIGG 195 (197)
T ss_dssp EEECBC----
T ss_pred EEeeCcccCC
Confidence 9999887653
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=1.5e-16 Score=167.91 Aligned_cols=131 Identities=17% Similarity=0.112 Sum_probs=80.5
Q ss_pred CcceEEEeecCCCcccccccccCCCCCcEEEccCcccccc-ccccccccccccEEeccCCCCcc-cchhhhcCccCceec
Q 041843 441 PHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQ-LPTGISKLVSLQLLDISYTSVTG-LPEGLKALVNLKCLN 518 (800)
Q Consensus 441 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~-lp~~i~~L~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~ 518 (800)
++++.|++.+|.+...++. +..+++|++|++++|..... +|..+..+++|++|++++|.++. .|..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5666677766666665555 33567777777777632222 56666677777777777776664 556666677777777
Q ss_pred ccccccccc--cchhhhCCCCCCcEEEeeec-CCCCCCcccccccchHHHhhCCC-CCcEEEEEecc
Q 041843 519 LDWADELVE--VPQQLLSNFSRLRVLRMFAT-GVGSYGRFSSRYVNVAEELLGLK-YLEVLEITFRS 581 (800)
Q Consensus 519 l~~~~~l~~--lp~~~~~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~ 581 (800)
+++|..+.. +|.. +.++++|++|++++| .+... ..+..+..++ +|+.|++++|.
T Consensus 149 L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~--------~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 149 LSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK--------HVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp CTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH--------HHHHHHHHSCTTCCEEECCSCG
T ss_pred CCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH--------HHHHHHHhcccCCCEEEeCCCc
Confidence 776643342 3332 566777777777776 44321 2455566666 77777776663
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=2.7e-16 Score=179.95 Aligned_cols=310 Identities=16% Similarity=0.136 Sum_probs=204.4
Q ss_pred cccccceEEEccccccCCCC-----C-CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccc---cccccccc
Q 041843 416 RGWEMGRRLSLMKNSIGNLP-----T-VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIML---RQLPTGIS 486 (800)
Q Consensus 416 ~~~~~l~~l~l~~~~~~~l~-----~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~---~~lp~~i~ 486 (800)
..+++++.|++++|.+..+. . +..+++|++|++++|.+..++ .++..+++|+.|+++++... ...+..+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 45678999999999886433 1 457899999999999988876 45889999999999864222 34456778
Q ss_pred ccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHh
Q 041843 487 KLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEEL 566 (800)
Q Consensus 487 ~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 566 (800)
.+++|+.|+++++....+|..+..+++|++|++++|.........++.++++|++|++.++ +... ......
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~--------~l~~~~ 338 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDR--------GLEVLA 338 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH--------HHHHHH
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHH--------HHHHHH
Confidence 8899999999988777788888899999999999887322222234689999999999833 2220 334445
Q ss_pred hCCCCCcEEEEEe-----------ccchhHHHhhhcccccccceecccccccCCccccccCcCC-cccCceEEeecc---
Q 041843 567 LGLKYLEVLEITF-----------RSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLAD-LEQLNTLYFRSC--- 631 (800)
Q Consensus 567 ~~l~~L~~L~l~~-----------~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~--- 631 (800)
..+++|+.|+++. +.++.. .........+.++.|.+.. .......+..+.. +++|++|+++++
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQR-GLIALAQGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHH-HHHHHHHHCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred HhCCCCCEEEeecCccccccccccCccCHH-HHHHHHhhCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence 6789999999993 444321 1111122345788888833 3333322233433 788999999853
Q ss_pred CCcceEEeccccccccCCCCcCCCCccEEeeecCCC-CCC--Chhh-hcCCCCcEEEEecCcchhHhhccCCCCCcCccc
Q 041843 632 DWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGN-LKH--LTFL-VFAPNLKSISVRDCDDMEEIISAGEFDDIPEMT 707 (800)
Q Consensus 632 ~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~-l~~--l~~l-~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~ 707 (800)
..+...|.+- .++.....+++|+.|+++.|.+ ++. +..+ ..+++|++|+|++|..-.....
T Consensus 417 n~l~~~p~~~----~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----------- 481 (592)
T 3ogk_B 417 ERITDLPLDN----GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM----------- 481 (592)
T ss_dssp SCCSSCCCHH----HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH-----------
T ss_pred ccccCchHHH----HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH-----------
Confidence 3343222110 0001112478999999988754 222 2223 3489999999998862221111
Q ss_pred CccCCcCCcccEeeccCcccccc--cCCCCCCCCCcceEeecCCCCCCCC
Q 041843 708 GIISSPFAKLQHLQLGGLGRLKS--IYWKPLPLPRLKELTVVDCDSLEKL 755 (800)
Q Consensus 708 ~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~c~~L~~L 755 (800)
.....+++|+.|++++|+ +.. +......+++|+.|++++|. ++.-
T Consensus 482 -~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 482 -EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp -HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred -HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 123457899999999987 332 22222457899999999986 6543
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=2.1e-16 Score=166.91 Aligned_cols=222 Identities=16% Similarity=0.171 Sum_probs=153.5
Q ss_pred ceEEEeecCCCcccccccccCC--CCCcEEEccCccccccccccccccccccEEeccCCCCcc--cchhhhcCccCceec
Q 041843 443 LLTLFLNDNPLRTITGGFFQSM--PCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTG--LPEGLKALVNLKCLN 518 (800)
Q Consensus 443 L~~L~l~~~~l~~~~~~~~~~l--~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~ 518 (800)
++.++++++.+. +..+..+ +++++|++++| .+...+..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 456677766554 3446666 89999999999 666666668889999999999998875 888899999999999
Q ss_pred ccccccccccchhhhCCCCCCcEEEeeec-CCCCCCcccccccchHHHhhCCCCCcEEEEEec-cchhHHHhhhcccccc
Q 041843 519 LDWADELVEVPQQLLSNFSRLRVLRMFAT-GVGSYGRFSSRYVNVAEELLGLKYLEVLEITFR-SFEAYQTFLSSQKLRS 596 (800)
Q Consensus 519 l~~~~~l~~lp~~~~~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~l~~ 596 (800)
+++|......|.. ++++++|++|++++| .+... ..+..+.++++|+.|++++| .++.... .
T Consensus 125 L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~--------~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~------- 187 (336)
T 2ast_B 125 LEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEF--------ALQTLLSSCSRLDELNLSWCFDFTEKHV-Q------- 187 (336)
T ss_dssp CTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHH--------HHHHHHHHCTTCCEEECCCCTTCCHHHH-H-------
T ss_pred CcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHH--------HHHHHHhcCCCCCEEcCCCCCCcChHHH-H-------
Confidence 9999754455555 789999999999999 44321 25566888999999999988 6654210 0
Q ss_pred cceecccccccCCccccccCcCCcc-cCceEEeeccC-Ccc--eEEeccccccccCCCCcCCCCccEEeeecCCCCCC--
Q 041843 597 CTQALFLHEFCREESIGVADLADLE-QLNTLYFRSCD-WIK--GLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKH-- 670 (800)
Q Consensus 597 ~l~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~-~~~--~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~-- 670 (800)
..+..++ +|++|++++|. .+. .++..+ ..+++|+.|++++|..++.
T Consensus 188 ------------------~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~----------~~~~~L~~L~l~~~~~l~~~~ 239 (336)
T 2ast_B 188 ------------------VAVAHVSETITQLNLSGYRKNLQKSDLSTLV----------RRCPNLVHLDLSDSVMLKNDC 239 (336)
T ss_dssp ------------------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHH----------HHCTTCSEEECTTCTTCCGGG
T ss_pred ------------------HHHHhcccCCCEEEeCCCcccCCHHHHHHHH----------hhCCCCCEEeCCCCCcCCHHH
Confidence 1133456 77777777774 121 111111 2357788888887754433
Q ss_pred ChhhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeeccCc
Q 041843 671 LTFLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQLGGL 725 (800)
Q Consensus 671 l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 725 (800)
++.+..+++|++|++++|..+..... .....+++|+.|++.+|
T Consensus 240 ~~~l~~l~~L~~L~l~~~~~~~~~~~------------~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 240 FQEFFQLNYLQHLSLSRCYDIIPETL------------LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTCTTCCGGGG------------GGGGGCTTCCEEECTTS
T ss_pred HHHHhCCCCCCEeeCCCCCCCCHHHH------------HHHhcCCCCCEEeccCc
Confidence 44567778888888888753221110 12345778888888776
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=1.5e-16 Score=171.28 Aligned_cols=85 Identities=19% Similarity=0.160 Sum_probs=40.1
Q ss_pred CCCCcceEEEeecCCCccccc----ccccCCCCCcEEEccCccccc----cccccc-------cccccccEEeccCCCCc
Q 041843 438 PTCPHLLTLFLNDNPLRTITG----GFFQSMPCLTVLKMSDNIMLR----QLPTGI-------SKLVSLQLLDISYTSVT 502 (800)
Q Consensus 438 ~~~~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~Ls~~~~~~----~lp~~i-------~~L~~L~~L~L~~~~i~ 502 (800)
..+++|++|++++|.+....+ ..+..+++|++|+|++| .+. .+|..+ ..+++|++|+|++|.+.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 344555555555555443221 11344555555555554 111 223222 44555555555555554
Q ss_pred c-----cchhhhcCccCceecccccc
Q 041843 503 G-----LPEGLKALVNLKCLNLDWAD 523 (800)
Q Consensus 503 ~-----lp~~i~~l~~L~~L~l~~~~ 523 (800)
. +|..+..+++|++|++++|.
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 4 44455555555555555543
No 98
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=5.4e-16 Score=161.45 Aligned_cols=203 Identities=16% Similarity=0.135 Sum_probs=100.3
Q ss_pred CCCcceEEEeecCCCcc-cccccc-cCCCCCcEEEccCcccccccccccccc-----ccccEEeccCCCCcccc-hhhhc
Q 041843 439 TCPHLLTLFLNDNPLRT-ITGGFF-QSMPCLTVLKMSDNIMLRQLPTGISKL-----VSLQLLDISYTSVTGLP-EGLKA 510 (800)
Q Consensus 439 ~~~~L~~L~l~~~~l~~-~~~~~~-~~l~~L~~L~Ls~~~~~~~lp~~i~~L-----~~L~~L~L~~~~i~~lp-~~i~~ 510 (800)
++++|++|++++|.+++ +|..+| ..+++|++|++++| .+...|..++.+ ++|++|++++|.+..+| ..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 35555555555555553 333322 55555556665555 344445555554 55556666555555544 44555
Q ss_pred CccCceecccccccccc--cchh-hhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccchhHHH
Q 041843 511 LVNLKCLNLDWADELVE--VPQQ-LLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEAYQT 587 (800)
Q Consensus 511 l~~L~~L~l~~~~~l~~--lp~~-~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 587 (800)
+++|++|++++|...+. +|.. .++++++|++|++++|.+..... .....+..+++|+.|+++.|.+.....
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG------VCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH------HHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH------HHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 55566665555543222 1222 11555555666655555442100 111222345555555555555444221
Q ss_pred hhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecC
Q 041843 588 FLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNC 665 (800)
Q Consensus 588 ~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c 665 (800)
. ........++.|+++++... .++ ..+. ++|++|++++|..... |. + ..+++|+.|+++++
T Consensus 246 ~-~~~~~l~~L~~L~Ls~N~l~-~ip-~~~~--~~L~~L~Ls~N~l~~~-p~-~----------~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 246 A-PSCDWPSQLNSLNLSFTGLK-QVP-KGLP--AKLSVLDLSYNRLDRN-PS-P----------DELPQVGNLSLKGN 306 (312)
T ss_dssp C-SCCCCCTTCCEEECTTSCCS-SCC-SSCC--SEEEEEECCSSCCCSC-CC-T----------TTSCEEEEEECTTC
T ss_pred h-hhhhhcCCCCEEECCCCccC-hhh-hhcc--CCceEEECCCCCCCCC-hh-H----------hhCCCCCEEeccCC
Confidence 0 00111235555555555432 222 2222 6788888888765432 21 2 24678888888776
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=7.8e-17 Score=167.74 Aligned_cols=205 Identities=15% Similarity=0.094 Sum_probs=102.7
Q ss_pred CCcceEEEeecCCCcccccccc--cCCCCCcEEEccCcccccccc----ccccccccccEEeccCCCCcccc-hhhhcCc
Q 041843 440 CPHLLTLFLNDNPLRTITGGFF--QSMPCLTVLKMSDNIMLRQLP----TGISKLVSLQLLDISYTSVTGLP-EGLKALV 512 (800)
Q Consensus 440 ~~~L~~L~l~~~~l~~~~~~~~--~~l~~L~~L~Ls~~~~~~~lp----~~i~~L~~L~~L~L~~~~i~~lp-~~i~~l~ 512 (800)
+++|+.|++++|.+.+..+..+ ..+++|++|++++|......| ..+..+++|++|++++|.+..+| ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3446666666666554443333 555666666666652222222 22334556666666666555543 3455566
Q ss_pred cCceecccccccccc--cch-hhhCCCCCCcEEEeeecCCCCCCcccccccchHH-HhhCCCCCcEEEEEeccchhHHHh
Q 041843 513 NLKCLNLDWADELVE--VPQ-QLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAE-ELLGLKYLEVLEITFRSFEAYQTF 588 (800)
Q Consensus 513 ~L~~L~l~~~~~l~~--lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~ 588 (800)
+|++|++++|..... ++. ..++++++|++|++++|.+.... ..+. .+..+++|+.|+++.|.+.....
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-------~~~~~l~~~l~~L~~L~Ls~N~l~~~~p- 241 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT-------GVCAALAAAGVQPHSLDLSHNSLRATVN- 241 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH-------HHHHHHHHHTCCCSSEECTTSCCCCCCC-
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH-------HHHHHHHhcCCCCCEEECCCCCCCccch-
Confidence 666666665543221 211 11245556666666655553210 1111 13445555555555554332100
Q ss_pred hhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEeeecCCCC
Q 041843 589 LSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNL 668 (800)
Q Consensus 589 ~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l 668 (800)
.....+..+++|++|++++|... .+|.. .+++|+.|++++| .+
T Consensus 242 -----------------------~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~------------~~~~L~~L~Ls~N-~l 284 (310)
T 4glp_A 242 -----------------------PSAPRCMWSSALNSLNLSFAGLE-QVPKG------------LPAKLRVLDLSSN-RL 284 (310)
T ss_dssp -----------------------SCCSSCCCCTTCCCEECCSSCCC-SCCSC------------CCSCCSCEECCSC-CC
T ss_pred -----------------------hhHHhccCcCcCCEEECCCCCCC-chhhh------------hcCCCCEEECCCC-cC
Confidence 00011222367777777777644 22211 1267777777776 45
Q ss_pred CCChhhhcCCCCcEEEEecCc
Q 041843 669 KHLTFLVFAPNLKSISVRDCD 689 (800)
Q Consensus 669 ~~l~~l~~l~~L~~L~l~~~~ 689 (800)
+.++.+..+++|+.|++++++
T Consensus 285 ~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 285 NRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCCCTTSCCCCSCEECSSTT
T ss_pred CCCchhhhCCCccEEECcCCC
Confidence 555556667777777777654
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=2.1e-15 Score=169.91 Aligned_cols=152 Identities=21% Similarity=0.328 Sum_probs=122.7
Q ss_pred ccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEE
Q 041843 415 VRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLL 494 (800)
Q Consensus 415 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L 494 (800)
...+.+++.|++++|.+..++.+..+++|+.|+|++|.+..+++ +..+++|++|+|++| .+..+| .+..+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 44567788888888888888888888999999999998888876 788889999999988 667766 68888999999
Q ss_pred eccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcE
Q 041843 495 DISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEV 574 (800)
Q Consensus 495 ~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 574 (800)
+|++|.+..+| .+..+++|+.|+|++|. +..++. ++.|++|+.|++++|.+.. ..+ +..+++|+.
T Consensus 115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~---------~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 115 SLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD---------IVP--LAGLTKLQN 179 (605)
T ss_dssp ECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCCC---------CGG--GTTCTTCCE
T ss_pred EecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCCC---------chh--hccCCCCCE
Confidence 99999888875 58888899999998775 466643 7888999999998887764 222 788888888
Q ss_pred EEEEeccchhH
Q 041843 575 LEITFRSFEAY 585 (800)
Q Consensus 575 L~l~~~~~~~~ 585 (800)
|+++.|.+..+
T Consensus 180 L~Ls~N~i~~l 190 (605)
T 1m9s_A 180 LYLSKNHISDL 190 (605)
T ss_dssp EECCSSCCCBC
T ss_pred EECcCCCCCCC
Confidence 88888876653
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=2.5e-14 Score=146.93 Aligned_cols=167 Identities=20% Similarity=0.324 Sum_probs=146.1
Q ss_pred ccEEEEcCCCccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccc
Q 041843 398 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM 477 (800)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~ 477 (800)
-+.+...+..+..+ +.+..+++++.|++++|.+..++.+..+++|++|++++|.++.++. +..+++|++|++++| .
T Consensus 48 L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~ 123 (291)
T 1h6t_A 48 IDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN-G 123 (291)
T ss_dssp CCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS-C
T ss_pred ccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCC-c
Confidence 35667777778877 4588889999999999999999889999999999999999988765 899999999999999 7
Q ss_pred cccccccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccc
Q 041843 478 LRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSS 557 (800)
Q Consensus 478 ~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~ 557 (800)
+..++ .+..+++|++|++++|.++.+ ..++.+++|++|++++|. +..+++ +..+++|++|++++|.+..
T Consensus 124 i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~~------ 192 (291)
T 1h6t_A 124 ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISD------ 192 (291)
T ss_dssp CCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCB------
T ss_pred CCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCCC------
Confidence 77775 689999999999999999998 579999999999999885 577766 7899999999999998763
Q ss_pred cccchHHHhhCCCCCcEEEEEeccchh
Q 041843 558 RYVNVAEELLGLKYLEVLEITFRSFEA 584 (800)
Q Consensus 558 ~~~~~~~~l~~l~~L~~L~l~~~~~~~ 584 (800)
. ..+..+++|+.|++++|.+..
T Consensus 193 ----l-~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 ----L-RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ----C-GGGTTCTTCSEEEEEEEEEEC
T ss_pred ----C-hhhccCCCCCEEECcCCcccC
Confidence 2 348899999999999987654
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=1.8e-14 Score=142.28 Aligned_cols=146 Identities=28% Similarity=0.415 Sum_probs=81.3
Q ss_pred EEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccc
Q 041843 401 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIML 478 (800)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~ 478 (800)
+...+..+..+|..+. .+++.|++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|+|++| .+
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l 100 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QL 100 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cC
Confidence 3344445555554433 45566666666665553 2455566666666666665555555556666666666666 44
Q ss_pred cccccc-ccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCC
Q 041843 479 RQLPTG-ISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVG 550 (800)
Q Consensus 479 ~~lp~~-i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 550 (800)
..+|.. +..+++|++|++++|.++.+|..+..+++|++|++++|. +..+|...+..+++|++|++.+|.+.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 444332 455666666666666666666556666666666666543 34555444555666666666555443
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=7.2e-16 Score=165.98 Aligned_cols=246 Identities=15% Similarity=0.145 Sum_probs=167.2
Q ss_pred ccccCccccccccceEEEccccccCCC-----C-CCCCCCcceEEEeecCCCccc----cccc------ccCCCCCcEEE
Q 041843 408 LTEAPADVRGWEMGRRLSLMKNSIGNL-----P-TVPTCPHLLTLFLNDNPLRTI----TGGF------FQSMPCLTVLK 471 (800)
Q Consensus 408 ~~~~~~~~~~~~~l~~l~l~~~~~~~l-----~-~~~~~~~L~~L~l~~~~l~~~----~~~~------~~~l~~L~~L~ 471 (800)
+..++..+..+++++.|++++|.+... + .+..+++|++|++++|.+..+ |..+ +..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 444545566678899999999988653 2 367899999999999865533 3332 47899999999
Q ss_pred ccCcccccc-----ccccccccccccEEeccCCCCcc-----cchhhhcC---------ccCceecccccccc-cccch-
Q 041843 472 MSDNIMLRQ-----LPTGISKLVSLQLLDISYTSVTG-----LPEGLKAL---------VNLKCLNLDWADEL-VEVPQ- 530 (800)
Q Consensus 472 Ls~~~~~~~-----lp~~i~~L~~L~~L~L~~~~i~~-----lp~~i~~l---------~~L~~L~l~~~~~l-~~lp~- 530 (800)
|++| .+.. +|..+.++++|++|+|++|.+.. ++..+..+ ++|++|++++|..- ..+|.
T Consensus 101 Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 101 LSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp CCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred CCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 9999 4444 78889999999999999999874 44445555 89999999988643 23442
Q ss_pred -hhhCCCCCCcEEEeeecCCCCCCcccccccchHH-HhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccC
Q 041843 531 -QLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAE-ELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCR 608 (800)
Q Consensus 531 -~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~ 608 (800)
..+..+++|++|++++|.+.... ...... .+..+++|+.|+++.|.+......
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g-----~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~-------------------- 234 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEG-----IEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-------------------- 234 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHH-----HHHHHHTTGGGCTTCCEEECCSSCCHHHHHH--------------------
T ss_pred HHHHHhCCCcCEEECcCCCCCHhH-----HHHHHHHHhhcCCCccEEECcCCCCCcHHHH--------------------
Confidence 23678999999999999775310 001333 677899999999999887532110
Q ss_pred CccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCC--cCCCCccEEeeecCCCCCC-----Chh-h-hcCCC
Q 041843 609 EESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQP--CVFRSLEEVTVDNCGNLKH-----LTF-L-VFAPN 679 (800)
Q Consensus 609 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~--~~~~~L~~L~l~~c~~l~~-----l~~-l-~~l~~ 679 (800)
.++ ..+..+++|++|++++|.....-...+ +... ..+++|+.|++++| .++. ++. + ..+++
T Consensus 235 --~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l------~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~ 304 (386)
T 2ca6_A 235 --ALA-IALKSWPNLRELGLNDCLLSARGAAAV------VDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPD 304 (386)
T ss_dssp --HHH-HHGGGCTTCCEEECTTCCCCHHHHHHH------HHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTT
T ss_pred --HHH-HHHccCCCcCEEECCCCCCchhhHHHH------HHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCC
Confidence 000 124556778888888876433100000 0000 12578888888887 3444 332 3 45788
Q ss_pred CcEEEEecCc
Q 041843 680 LKSISVRDCD 689 (800)
Q Consensus 680 L~~L~l~~~~ 689 (800)
|++|++++|+
T Consensus 305 L~~L~l~~N~ 314 (386)
T 2ca6_A 305 LLFLELNGNR 314 (386)
T ss_dssp CCEEECTTSB
T ss_pred ceEEEccCCc
Confidence 8888888775
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=3.3e-15 Score=168.37 Aligned_cols=146 Identities=21% Similarity=0.306 Sum_probs=105.1
Q ss_pred ccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccC
Q 041843 419 EMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISY 498 (800)
Q Consensus 419 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~ 498 (800)
..+..+.+..+.+..+.....+++|+.|++++|.+..++. +..+++|++|+|++| .+..+|. ++.+++|++|+|++
T Consensus 21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcC
Confidence 3445555666666666666677888888888888877763 678888888888888 6666665 78888888888888
Q ss_pred CCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEE
Q 041843 499 TSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEIT 578 (800)
Q Consensus 499 ~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 578 (800)
|.+..+| .+..+++|+.|++++|. +..++. +..|++|+.|++++|.+.. . ..+..+++|+.|+++
T Consensus 97 N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~----------l-~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 97 NKIKDLS-SLKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYLGNNKITD----------I-TVLSRLTKLDTLSLE 161 (605)
T ss_dssp SCCCCCT-TSTTCTTCCEEECTTSC-CCCCGG--GGGCTTCSEEECCSSCCCC----------C-GGGGSCTTCSEEECC
T ss_pred CCCCCCh-hhccCCCCCEEEecCCC-CCCCcc--ccCCCccCEEECCCCccCC----------c-hhhcccCCCCEEECc
Confidence 8888776 67788888888888765 455554 6778888888888776653 1 456666777777766
Q ss_pred eccch
Q 041843 579 FRSFE 583 (800)
Q Consensus 579 ~~~~~ 583 (800)
.|.+.
T Consensus 162 ~N~l~ 166 (605)
T 1m9s_A 162 DNQIS 166 (605)
T ss_dssp SSCCC
T ss_pred CCcCC
Confidence 65543
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=1.2e-14 Score=146.76 Aligned_cols=157 Identities=19% Similarity=0.216 Sum_probs=135.9
Q ss_pred CccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccccccc
Q 041843 407 GLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGIS 486 (800)
Q Consensus 407 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~ 486 (800)
.+.+++ .+..+++++.|++++|.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++| .+..+|....
T Consensus 30 ~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~~ 105 (263)
T 1xeu_A 30 SVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIPS 105 (263)
T ss_dssp CTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCCC
T ss_pred Cccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCcccc
Confidence 445553 566788999999999999999999999999999999999999887 889999999999999 7788876444
Q ss_pred ccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHh
Q 041843 487 KLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEEL 566 (800)
Q Consensus 487 ~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 566 (800)
.+|++|++++|.++.+| .+..+++|+.|++++|. +..+|. ++.+++|++|++++|.+.. . ..+
T Consensus 106 --~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~----------~-~~l 168 (263)
T 1xeu_A 106 --ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN----------T-GGL 168 (263)
T ss_dssp --SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB----------C-TTS
T ss_pred --CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc----------h-HHh
Confidence 99999999999999986 68999999999999875 577764 8899999999999998864 2 567
Q ss_pred hCCCCCcEEEEEeccchh
Q 041843 567 LGLKYLEVLEITFRSFEA 584 (800)
Q Consensus 567 ~~l~~L~~L~l~~~~~~~ 584 (800)
..+++|+.|++++|.+..
T Consensus 169 ~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTCCCCCEEEEEEEEEEC
T ss_pred ccCCCCCEEeCCCCcccC
Confidence 889999999999988754
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=1.5e-14 Score=141.70 Aligned_cols=150 Identities=17% Similarity=0.295 Sum_probs=106.6
Q ss_pred eEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccc-ccccccccccccEEeccCCC
Q 041843 422 RRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQ-LPTGISKLVSLQLLDISYTS 500 (800)
Q Consensus 422 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~-lp~~i~~L~~L~~L~L~~~~ 500 (800)
+.++.+++.+..+|... .++|+.|++++|.++.+++..|..+++|++|+|++| .+.. .|..+.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc
Confidence 35666677777776422 167788888888887777766777888888888887 4444 36777788888888888888
Q ss_pred Ccccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEe
Q 041843 501 VTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITF 579 (800)
Q Consensus 501 i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 579 (800)
|+.+|.. +..+++|++|++++|. +..+++..+.++++|++|++++|.+.. .....+..+++|+.|+++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~---------~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQT---------IAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC---------CCTTTTTTCTTCCEEECCS
T ss_pred CCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCE---------ECHHHHhCCCCCCEEEeCC
Confidence 8877765 4677888888888764 455655557778888888888877764 3334566777788888877
Q ss_pred ccch
Q 041843 580 RSFE 583 (800)
Q Consensus 580 ~~~~ 583 (800)
|.+.
T Consensus 162 N~~~ 165 (220)
T 2v9t_B 162 NPFI 165 (220)
T ss_dssp SCEE
T ss_pred CCcC
Confidence 7653
No 107
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=9.5e-16 Score=175.53 Aligned_cols=206 Identities=18% Similarity=0.114 Sum_probs=117.5
Q ss_pred ccccceEEEccccccCCC--CCCC-CCCcceEEEeecCC-Cccc-ccccccCCCCCcEEEccCcccccc-----cccccc
Q 041843 417 GWEMGRRLSLMKNSIGNL--PTVP-TCPHLLTLFLNDNP-LRTI-TGGFFQSMPCLTVLKMSDNIMLRQ-----LPTGIS 486 (800)
Q Consensus 417 ~~~~l~~l~l~~~~~~~l--~~~~-~~~~L~~L~l~~~~-l~~~-~~~~~~~l~~L~~L~Ls~~~~~~~-----lp~~i~ 486 (800)
.+++++.|+++++.+... ..+. .+++|++|++.+|. +... .+.++..+++|++|++++|. +.. ++....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhh
Confidence 355788888887765321 1222 57788888888873 3321 22334578888888888884 322 333334
Q ss_pred ccccccEEeccCCC--Ccc--cchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccch
Q 041843 487 KLVSLQLLDISYTS--VTG--LPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNV 562 (800)
Q Consensus 487 ~L~~L~~L~L~~~~--i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 562 (800)
.+++|++|++++|. +.. ++.-+.++++|++|++++|..+..+|.. +.++++|++|++..+...-.. ......
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~---~~~~~l 257 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRP---DVYSGL 257 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCH---HHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccch---hhHHHH
Confidence 66788888888875 321 3333456788888888888666666654 678888888887665421100 000033
Q ss_pred HHHhhCCCCCcEE-EEEeccchhHHHhhhcccccccceecccccccCCccccc-cCcCCcccCceEEeecc
Q 041843 563 AEELLGLKYLEVL-EITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGV-ADLADLEQLNTLYFRSC 631 (800)
Q Consensus 563 ~~~l~~l~~L~~L-~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~ 631 (800)
+..+.++++|+.| .+.......++.. ....+.++.|.+.++. ...... ..+..+++|++|++++|
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVPAYLPAV---YSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCGGGGGGG---HHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHhcCCCcccccCCcccchhhHHHH---HHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 4456667777766 2222221112111 1123466777776665 222111 12345667777777665
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=2.1e-14 Score=140.68 Aligned_cols=149 Identities=23% Similarity=0.353 Sum_probs=130.9
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
..+...+.++.++|..+. .+++.|++++|.+..++ .+..+++|++|++++|.+..+.+..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N- 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-
Confidence 356677778888987665 68999999999999888 5889999999999999999998888999999999999999
Q ss_pred cccccccc-ccccccccEEeccCCCCccc-chhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCC
Q 041843 477 MLRQLPTG-ISKLVSLQLLDISYTSVTGL-PEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGS 551 (800)
Q Consensus 477 ~~~~lp~~-i~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 551 (800)
.+..+|.. +.++++|++|+|++|.++.+ |..+..+++|++|++++|. +..++...+..+++|++|++.+|.+.-
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 77788765 68899999999999999997 5678999999999999875 677887778999999999999997643
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=2.9e-14 Score=137.28 Aligned_cols=148 Identities=20% Similarity=0.286 Sum_probs=128.3
Q ss_pred ccEEEEcCCCccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccc
Q 041843 398 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM 477 (800)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~ 477 (800)
-..+...+..+.++| .+..+++++.|++++|.+..++.+..+++|++|++++|.+....+..|..+++|++|++++|..
T Consensus 46 L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 46 LTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp CCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred ccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence 356677777888886 7888999999999999999998999999999999999999886566689999999999999955
Q ss_pred cccccccccccccccEEeccCCC-CcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCC
Q 041843 478 LRQLPTGISKLVSLQLLDISYTS-VTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVG 550 (800)
Q Consensus 478 ~~~lp~~i~~L~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 550 (800)
....|..++++++|++|++++|. ++.+| .+..+++|++|++++|. +..++. +..+++|++|++.+|.+.
T Consensus 125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 125 DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp BGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC---
T ss_pred CcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcccC
Confidence 55678889999999999999997 88888 79999999999999886 567773 889999999999999765
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=1.5e-14 Score=140.88 Aligned_cols=145 Identities=28% Similarity=0.476 Sum_probs=90.9
Q ss_pred EEEcCCCccccCccccccccceEEEccccccCCCCC--CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccc
Q 041843 401 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPT--VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIML 478 (800)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~ 478 (800)
+...+.++..+|..+. ++++.|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|++++| .+
T Consensus 12 v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l 88 (208)
T 2o6s_A 12 VECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QL 88 (208)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cC
Confidence 4444555555554432 466677777776666653 556677777777777766666666666777777777766 44
Q ss_pred cccccc-ccccccccEEeccCCCCcccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCC
Q 041843 479 RQLPTG-ISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGV 549 (800)
Q Consensus 479 ~~lp~~-i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~ 549 (800)
..+|.. +.++++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...+.++++|++|++.+|.+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe
Confidence 454433 46667777777777766666544 5666677777776653 4555555566667777777666644
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=1.5e-14 Score=140.83 Aligned_cols=149 Identities=26% Similarity=0.409 Sum_probs=123.0
Q ss_pred eEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccccc-ccccccccEEeccCCC
Q 041843 422 RRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDISYTS 500 (800)
Q Consensus 422 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~~L~L~~~~ 500 (800)
+.++..++.+..+|.. -.++|++|++++|.++.+++..|..+++|++|++++| .+..+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc
Confidence 4677778888887742 2468999999999999999888899999999999999 66677654 6889999999999999
Q ss_pred Ccccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEe
Q 041843 501 VTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITF 579 (800)
Q Consensus 501 i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 579 (800)
++.+|.. +..+++|++|++++|. +..+|...+.++++|++|++++|.+.. .....+..+++|+.|+++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~---------~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKS---------VPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC---------CCTTTTTTCTTCCEEECCS
T ss_pred CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccce---------eCHHHhccCCCccEEEecC
Confidence 9998765 6899999999999875 577887778899999999999998764 2334467788888888887
Q ss_pred ccc
Q 041843 580 RSF 582 (800)
Q Consensus 580 ~~~ 582 (800)
|.+
T Consensus 158 N~~ 160 (208)
T 2o6s_A 158 NPW 160 (208)
T ss_dssp CCB
T ss_pred CCe
Confidence 754
No 112
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=8.9e-15 Score=152.12 Aligned_cols=196 Identities=17% Similarity=0.114 Sum_probs=84.1
Q ss_pred ceEEEccccccCC-CCC-C--CCCCcceEEEeecCCCccccc----ccccCCCCCcEEEccCcccccccccccccccccc
Q 041843 421 GRRLSLMKNSIGN-LPT-V--PTCPHLLTLFLNDNPLRTITG----GFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQ 492 (800)
Q Consensus 421 l~~l~l~~~~~~~-l~~-~--~~~~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~ 492 (800)
++.|++++|.+.. .|. + ..+++|++|++++|.+....+ ..+..+++|++|++++|......|..++.+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4445555444432 221 2 444455555555554443211 1123444555555555522222233444455555
Q ss_pred EEeccCCCCcc---cchh--hhcCccCceecccccccccccchh---hhCCCCCCcEEEeeecCCCCCCcccccccchHH
Q 041843 493 LLDISYTSVTG---LPEG--LKALVNLKCLNLDWADELVEVPQQ---LLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAE 564 (800)
Q Consensus 493 ~L~L~~~~i~~---lp~~--i~~l~~L~~L~l~~~~~l~~lp~~---~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 564 (800)
+|++++|++.. ++.. ++.+++|++|++++|. +..+|.. .++++++|++|++++|.+.. ..+.
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~---------~~p~ 242 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRA---------TVNP 242 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCC---------CCCS
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCc---------cchh
Confidence 55555554332 2211 2344455555555443 2322221 23344555555555554433 1122
Q ss_pred HhhCC---CCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCc
Q 041843 565 ELLGL---KYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWI 634 (800)
Q Consensus 565 ~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 634 (800)
.+..+ ++|+.|+++.|.++.++... .+.++.|+++++.... + ..+..+++|+.|++++|...
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-----~~~L~~L~Ls~N~l~~-~--~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLEQVPKGL-----PAKLRVLDLSSNRLNR-A--PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCCSCCSCC-----CSCCSCEECCSCCCCS-C--CCTTSCCCCSCEECSSTTTS
T ss_pred hHHhccCcCcCCEEECCCCCCCchhhhh-----cCCCCEEECCCCcCCC-C--chhhhCCCccEEECcCCCCC
Confidence 22222 34555555554444322111 1344444444443221 1 12456788888888888654
No 113
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=2.1e-15 Score=172.65 Aligned_cols=153 Identities=22% Similarity=0.230 Sum_probs=81.3
Q ss_pred ccccceEEEccccccCC-----CCCC-CCCCcceEEEeecCCCccccc----ccccCCCCCcEEEccCcccccccccccc
Q 041843 417 GWEMGRRLSLMKNSIGN-----LPTV-PTCPHLLTLFLNDNPLRTITG----GFFQSMPCLTVLKMSDNIMLRQLPTGIS 486 (800)
Q Consensus 417 ~~~~l~~l~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~Ls~~~~~~~lp~~i~ 486 (800)
.+++++.|++++|.+.. ++.+ ..+++|++|++++|. ..+.. ..+..+++|++|++++|..+..+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 45677777777776533 2222 356777777777765 22221 1234467777777777755555666667
Q ss_pred ccccccEEeccCCC-------CcccchhhhcCccCcee-cccccccccccchhhhCCCCCCcEEEeeecCCCCCCccccc
Q 041843 487 KLVSLQLLDISYTS-------VTGLPEGLKALVNLKCL-NLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSR 558 (800)
Q Consensus 487 ~L~~L~~L~L~~~~-------i~~lp~~i~~l~~L~~L-~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~ 558 (800)
++++|++|+++++. +..++..+.++++|+.| .+.+.. ...+|.. +..+++|++|++++|.+...
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~-~~~~~~L~~L~L~~~~l~~~------ 304 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAV-YSVCSRLTTLNLSYATVQSY------ 304 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGG-HHHHTTCCEEECTTCCCCHH------
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHH-HHhhCCCCEEEccCCCCCHH------
Confidence 77777777754432 23344444445555544 222211 1223322 33456666666666653320
Q ss_pred ccchHHHhhCCCCCcEEEEEec
Q 041843 559 YVNVAEELLGLKYLEVLEITFR 580 (800)
Q Consensus 559 ~~~~~~~l~~l~~L~~L~l~~~ 580 (800)
.....+..+++|+.|+++.+
T Consensus 305 --~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 305 --DLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp --HHHHHHTTCTTCCEEEEEGG
T ss_pred --HHHHHHhcCCCcCEEeCcCc
Confidence 12233455666666666655
No 114
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=1.1e-12 Score=141.07 Aligned_cols=286 Identities=15% Similarity=0.008 Sum_probs=179.8
Q ss_pred CcccchhHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhcccC----CCC-CCEEEEEEEcCcc-CHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDN----PTD-FDYVIWVVVSKDL-QLEKI 132 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----~~~-f~~~~wv~~~~~~-~~~~~ 132 (800)
..++||+++++++.+++.. ++..+.+.|+|++|+|||++|+++++..... ... ...++|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999999987754 3356799999999999999999999875211 111 4567888887776 88888
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh------h-hhhcCCcCCCCcEEEEEeCCccccc
Q 041843 133 QETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV------D-LKKIGVPLPKNSAVVFTTRFVDVCG 205 (800)
Q Consensus 133 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------~-~~~~~~~~~~~s~iivTtR~~~~~~ 205 (800)
...++..+..................+.+.+..++.+|||||++... . +..+.... .+..+|+||+......
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHh
Confidence 88888887322211233344666777888888777799999996532 1 22332222 5788999998653211
Q ss_pred cc------CccceEEeccCChHHHHHHHHHHhCc--ccccCCCChHHHHHHHHHHhC---CChh-HHHHHHHHH--h---
Q 041843 206 GM------EARRKFKVACLSDEDAWELFREKVGE--ETIESHHSIPQLAQTVAKECG---GLPL-ALIIIGRAM--A--- 268 (800)
Q Consensus 206 ~~------~~~~~~~l~~L~~~e~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~~~~l--~--- 268 (800)
.+ .....+.+++++.++..+++..++.. .....+ ++..+.+++.++ |.|. |+..+..+. .
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 11 11238999999999999999987632 111122 567788888888 9887 433333322 2
Q ss_pred cCCCHHHHHHHHHHHHhhhhccCCChhHHHHHHhhhccCCChhhHHHHHhHhccCCCC-cccchHHHHHHHHhcCCcccc
Q 041843 269 YKKTPEEWRYAIEVLRRSASEFAGLGKEVYSLLKFSYDCLPNDAIRSCFLYCCLYPED-YSIDKRDLIDCWMCEGFLEED 347 (800)
Q Consensus 269 ~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~l~~~~fp~~-~~i~~~~li~~w~a~g~i~~~ 347 (800)
..-+.+.+..+++.... ..+..++..|++ +.+..+..++. ... ..+. +.....--..| ..
T Consensus 256 ~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g-~~-- 316 (384)
T 2qby_B 256 GIIRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIE-SEDVMSAH-KMYTDLCNKFK-QK-- 316 (384)
T ss_dssp SCCCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT-CC--
T ss_pred CccCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHH-hcccChHH-HHHHHHHHHcC-CC--
Confidence 12466666666554321 234456677887 56666655555 111 1111 01111111112 11
Q ss_pred ccchhhhHHHHHHHHHHhcccccc
Q 041843 348 KFGTQNRGSHIVTTLVRACLLEEV 371 (800)
Q Consensus 348 ~~~~~~~~~~~~~~L~~~~ll~~~ 371 (800)
........+++..|.+.+++...
T Consensus 317 -~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 -PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp -CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred -CCCHHHHHHHHHHHHhCCCEEEE
Confidence 12235667889999999999764
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.53 E-value=3.9e-15 Score=150.34 Aligned_cols=170 Identities=19% Similarity=0.228 Sum_probs=142.7
Q ss_pred ccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEec
Q 041843 417 GWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDI 496 (800)
Q Consensus 417 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L 496 (800)
.+.++..+++.++.+..++.+..+++|++|++++|.++.++ .+..+++|++|++++| .+..+|. +.++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 45677788889999998888889999999999999999887 3889999999999999 7888887 999999999999
Q ss_pred cCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEE
Q 041843 497 SYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLE 576 (800)
Q Consensus 497 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 576 (800)
++|.++.+|.... .+|++|++++|. +..++. ++++++|++|++++|.+.. . ..+..+++|+.|+
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~----------~-~~l~~l~~L~~L~ 156 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTDS--LIHLKNLEILSIRNNKLKS----------I-VMLGFLSKLEVLD 156 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSC-CSBSGG--GTTCTTCCEEECTTSCCCB----------C-GGGGGCTTCCEEE
T ss_pred CCCccCCcCcccc--CcccEEEccCCc-cCCChh--hcCcccccEEECCCCcCCC----------C-hHHccCCCCCEEE
Confidence 9999999886443 999999999885 567764 8999999999999998764 2 3688899999999
Q ss_pred EEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcc
Q 041843 577 ITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIK 635 (800)
Q Consensus 577 l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 635 (800)
++.|.+... ..+..+++|+.|++++|....
T Consensus 157 L~~N~i~~~-----------------------------~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 157 LHGNEITNT-----------------------------GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CTTSCCCBC-----------------------------TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCCCcCcch-----------------------------HHhccCCCCCEEeCCCCcccC
Confidence 988776542 236678899999999986543
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=3.4e-14 Score=150.97 Aligned_cols=171 Identities=22% Similarity=0.312 Sum_probs=138.8
Q ss_pred EEEEcCCCccccCccccccccceEEEccccccCCCCC--CC-CCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 400 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPT--VP-TCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
.+...+..+..+|..+. ..++.|++++|.+..++. +. ++++|++|++++|.++.+++..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N- 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN- 98 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-
Confidence 56667778888877654 468899999999988774 55 8999999999999999999888999999999999999
Q ss_pred ccccccc-cccccccccEEeccCCCCccc-chhhhcCccCceecccccccccccchhhh---CCCCCCcEEEeeecCCCC
Q 041843 477 MLRQLPT-GISKLVSLQLLDISYTSVTGL-PEGLKALVNLKCLNLDWADELVEVPQQLL---SNFSRLRVLRMFATGVGS 551 (800)
Q Consensus 477 ~~~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~---~~L~~L~~L~l~~~~~~~ 551 (800)
.+..+|. .+.++.+|++|+|++|.|..+ |..+..+++|++|++++|. +..+|...+ .++++|++|++++|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 5666654 688999999999999999986 5678999999999999775 678888766 679999999999998875
Q ss_pred CCcccccccchHHHhhCCCC--CcEEEEEeccch
Q 041843 552 YGRFSSRYVNVAEELLGLKY--LEVLEITFRSFE 583 (800)
Q Consensus 552 ~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 583 (800)
.....+..++. |+.|++++|.+.
T Consensus 178 ---------l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 ---------LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ---------CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ---------cCHHHhhhccHhhcceEEecCCCcc
Confidence 34556666766 478888887764
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=6.1e-14 Score=137.42 Aligned_cols=150 Identities=17% Similarity=0.279 Sum_probs=110.6
Q ss_pred eEEEccccccCCCCCCCCCCcceEEEeecCCCcccc-cccccCCCCCcEEEccCcccccccc-ccccccccccEEeccCC
Q 041843 422 RRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTIT-GGFFQSMPCLTVLKMSDNIMLRQLP-TGISKLVSLQLLDISYT 499 (800)
Q Consensus 422 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~ 499 (800)
+.++++++.+..+|... ...++.|++++|.++.++ ..+|..+++|++|++++| .+..+| ..+.++++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence 46777888887777421 345678888888888774 455778888888888888 555554 46888888888888888
Q ss_pred CCcccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEE
Q 041843 500 SVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEIT 578 (800)
Q Consensus 500 ~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 578 (800)
.++.+|.. +..+++|++|++++|. +..+++..+.++++|++|++++|.+.. ..+..+..+++|+.|+++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~---------~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITT---------VAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCC---------BCTTTTTTCTTCCEEECC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCE---------ECHHHhcCCCCCCEEEec
Confidence 88886654 7788888888888775 455554457888888888888887765 345667778888888888
Q ss_pred eccch
Q 041843 579 FRSFE 583 (800)
Q Consensus 579 ~~~~~ 583 (800)
+|.+.
T Consensus 162 ~N~l~ 166 (220)
T 2v70_A 162 ANPFN 166 (220)
T ss_dssp SCCEE
T ss_pred CcCCc
Confidence 77654
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=5.6e-14 Score=138.73 Aligned_cols=150 Identities=23% Similarity=0.316 Sum_probs=129.8
Q ss_pred ceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccc-cccccccccEEeccCC
Q 041843 421 GRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPT-GISKLVSLQLLDISYT 499 (800)
Q Consensus 421 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~~ 499 (800)
...++.+++.+..+|... .++|++|++++|.+..+++..|..+++|++|+|++| .+..+|. .+..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence 456888899999988632 389999999999999998888999999999999999 6777775 4689999999999999
Q ss_pred CCcccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEE
Q 041843 500 SVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEIT 578 (800)
Q Consensus 500 ~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 578 (800)
.|+.+|.. +..+++|++|++++|. +..+|.. +.++++|++|++++|.+.. .....+..+++|+.|+++
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~---------~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKS---------IPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCC---------CCTTTTTTCTTCCEEECT
T ss_pred cCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCc---------cCHHHHhCCCCCCEEEee
Confidence 99998765 6899999999999875 6789987 7999999999999998875 334567889999999999
Q ss_pred eccch
Q 041843 579 FRSFE 583 (800)
Q Consensus 579 ~~~~~ 583 (800)
+|.+.
T Consensus 168 ~N~~~ 172 (229)
T 3e6j_A 168 GNPWD 172 (229)
T ss_dssp TSCBC
T ss_pred CCCcc
Confidence 88764
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=9.4e-14 Score=136.09 Aligned_cols=148 Identities=18% Similarity=0.271 Sum_probs=127.1
Q ss_pred EEEEcCCCccccCccccccccceEEEccccccCCCCC---CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 400 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPT---VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
.+...+..+..+|..+. ..++.|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N- 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN- 91 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-
Confidence 56677778888887654 457899999999988843 789999999999999999999988999999999999999
Q ss_pred cccccc-ccccccccccEEeccCCCCccc-chhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCC
Q 041843 477 MLRQLP-TGISKLVSLQLLDISYTSVTGL-PEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGS 551 (800)
Q Consensus 477 ~~~~lp-~~i~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 551 (800)
.+..+| ..+.++++|++|+|++|.++.+ |..+..+++|++|++++|. +..+++..+..+++|++|++.+|.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 555554 5589999999999999999997 6779999999999999886 566755558999999999999997654
No 120
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.49 E-value=1.6e-12 Score=139.91 Aligned_cols=289 Identities=15% Similarity=0.136 Sum_probs=179.3
Q ss_pred CCcccchhHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhcccCC---CCCCEEEEEEEcCccCHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDLQLEKIQE 134 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~ 134 (800)
+..++||+++++++..++.. ....+.+.|+|++|+||||+|+++++...... +.-..++|+++....+...+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 36799999999999998854 33567899999999999999999998762110 1134577888888888889999
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHhc--CCceEEEEccccchhh-------hhhcCCcC-----CCCcEEEEEeCC
Q 041843 135 TIGKKIGLYTDSWKSKSLEEKAQDIFKTLS--KKKFALLLDDLWERVD-------LKKIGVPL-----PKNSAVVFTTRF 200 (800)
Q Consensus 135 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~-------~~~~~~~~-----~~~s~iivTtR~ 200 (800)
.++.+++.... .......+....+.+.+. +++.+||||+++.... +..+.... +.+..+|+||+.
T Consensus 98 ~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 98 AIAEAVGVRVP-FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHSCCCC-SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 99998865322 133446666677777763 4688999999965321 22221111 346678888876
Q ss_pred cccccccC-------ccceEEeccCChHHHHHHHHHHhCc--ccccCCCChHHHHHHHHHHhC---CChhHH-HHHHHHH
Q 041843 201 VDVCGGME-------ARRKFKVACLSDEDAWELFREKVGE--ETIESHHSIPQLAQTVAKECG---GLPLAL-IIIGRAM 267 (800)
Q Consensus 201 ~~~~~~~~-------~~~~~~l~~L~~~e~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~~---g~Plai-~~~~~~l 267 (800)
......+. ....+.+++++.++..+++..++.. .....+ .+..+.+++.++ |.|..+ ..+..+.
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 53322111 1147899999999999999987642 111222 456778888888 999433 3322221
Q ss_pred h-----c--CCCHHHHHHHHHHHHhhhhccCCChhHHHHHHhhhccCCChhhHHHHHhHhc-cCCCCcccchHHHHHHHH
Q 041843 268 A-----Y--KKTPEEWRYAIEVLRRSASEFAGLGKEVYSLLKFSYDCLPNDAIRSCFLYCC-LYPEDYSIDKRDLIDCWM 339 (800)
Q Consensus 268 ~-----~--~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~l~~~-~fp~~~~i~~~~li~~w~ 339 (800)
. + .-+.+.+..+++... ...+.-++..+++ +.+..+...+ ++.....+....+.+...
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 1 125556655554332 1234456678888 5555555444 443223454443333221
Q ss_pred ----hcCCccccccchhhhHHHHHHHHHHhcccccc
Q 041843 340 ----CEGFLEEDKFGTQNRGSHIVTTLVRACLLEEV 371 (800)
Q Consensus 340 ----a~g~i~~~~~~~~~~~~~~~~~L~~~~ll~~~ 371 (800)
..| .. .........+++.|...++++..
T Consensus 320 ~~~~~~~-~~---~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 320 ELTSTLG-LE---HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHTT-CC---CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcC-CC---CCCHHHHHHHHHHHHhCCCeEEE
Confidence 112 11 12235667889999999999874
No 121
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=9.9e-13 Score=141.53 Aligned_cols=291 Identities=14% Similarity=0.120 Sum_probs=174.9
Q ss_pred CCcccchhHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
+..|+||+++++++.+++.. ++..+.+.|+|++|+||||||+++++...........++|+++....+...+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 36799999999999998874 345679999999999999999999987621111034678888777777788888888
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhc--CCceEEEEccccchh------hhhhcCCcC----CCCcEEEEEeCCccccc
Q 041843 138 KKIGLYTDSWKSKSLEEKAQDIFKTLS--KKKFALLLDDLWERV------DLKKIGVPL----PKNSAVVFTTRFVDVCG 205 (800)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~~~~~~~~~----~~~s~iivTtR~~~~~~ 205 (800)
..++..... ...+..+....+.+.+. +++.+||+|+++... .+..+.... ..+..+|+||+......
T Consensus 99 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 99 ESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 877543221 23345566666666664 458999999996432 222221111 22567788888664432
Q ss_pred ccCc-------cceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhC---CChhHHHHHHH-HHh-----c
Q 041843 206 GMEA-------RRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECG---GLPLALIIIGR-AMA-----Y 269 (800)
Q Consensus 206 ~~~~-------~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plai~~~~~-~l~-----~ 269 (800)
.+.. ...+.+++++.++..+++...+.... ....-..+..+.+++.++ |.|..+..+.. ... .
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 2211 14799999999999999988753211 011122667788888888 99984433332 211 1
Q ss_pred --CCCHHHHHHHHHHHHhhhhccCCChhHHHHHHhhhccCCChhhHHHHHhHhccCCC-C-cccchHHHHHHH--Hhc--
Q 041843 270 --KKTPEEWRYAIEVLRRSASEFAGLGKEVYSLLKFSYDCLPNDAIRSCFLYCCLYPE-D-YSIDKRDLIDCW--MCE-- 341 (800)
Q Consensus 270 --~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~l~~~~fp~-~-~~i~~~~li~~w--~a~-- 341 (800)
.-+.+.+..+++... ...+.-.+..+++ ..+..+..++...+ + ..+....+.+.. +++
T Consensus 257 ~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEIE-------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp CSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 124555555443322 1234455677877 55655555553211 1 223333332221 111
Q ss_pred CCccccccchhhhHHHHHHHHHHhcccccc
Q 041843 342 GFLEEDKFGTQNRGSHIVTTLVRACLLEEV 371 (800)
Q Consensus 342 g~i~~~~~~~~~~~~~~~~~L~~~~ll~~~ 371 (800)
| +.. ........+++.|.+.+++...
T Consensus 323 g-~~~---~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 G-VEA---VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp T-CCC---CCHHHHHHHHHHHHHHTSEEEE
T ss_pred C-CCC---CCHHHHHHHHHHHHhCCCEEEE
Confidence 2 111 1124567789999999999653
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=2.6e-14 Score=152.05 Aligned_cols=227 Identities=15% Similarity=0.131 Sum_probs=138.1
Q ss_pred EEccccccCC-CCCCC-CCCcceEEEeecCCCccccc----ccccCCC-CCcEEEccCcccccccccccccc-----ccc
Q 041843 424 LSLMKNSIGN-LPTVP-TCPHLLTLFLNDNPLRTITG----GFFQSMP-CLTVLKMSDNIMLRQLPTGISKL-----VSL 491 (800)
Q Consensus 424 l~l~~~~~~~-l~~~~-~~~~L~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~Ls~~~~~~~lp~~i~~L-----~~L 491 (800)
+.++.|.+.. +|.+. ..++|++|++++|.+...+. ..|..++ +|++|+|++|......+..++.+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4455566543 33333 33448888888888877765 5567777 78888888884333345566665 788
Q ss_pred cEEeccCCCCcccch-h----hhcC-ccCceecccccccccccchhh----hCC-CCCCcEEEeeecCCCCCCccccccc
Q 041843 492 QLLDISYTSVTGLPE-G----LKAL-VNLKCLNLDWADELVEVPQQL----LSN-FSRLRVLRMFATGVGSYGRFSSRYV 560 (800)
Q Consensus 492 ~~L~L~~~~i~~lp~-~----i~~l-~~L~~L~l~~~~~l~~lp~~~----~~~-L~~L~~L~l~~~~~~~~~~~~~~~~ 560 (800)
++|+|++|.++..+. . +..+ ++|++|++++|. +...+... +.. .++|++|++++|.+.... ..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-----~~ 156 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS-----SD 156 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC-----HH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH-----HH
Confidence 888888888876433 2 4444 788888888775 45444432 333 358888888888765311 00
Q ss_pred chHHHhhCCC-CCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCc-ccCceEEeeccCCcce--
Q 041843 561 NVAEELLGLK-YLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADL-EQLNTLYFRSCDWIKG-- 636 (800)
Q Consensus 561 ~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~-- 636 (800)
.....+..++ +|+.|+++.|.+........ ...+..+ ++|++|++++|.....
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l-----------------------~~~l~~~~~~L~~L~Ls~N~i~~~~~ 213 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAEL-----------------------AKFLASIPASVTSLDLSANLLGLKSY 213 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHH-----------------------HHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHH-----------------------HHHHHhCCCCCCEEECCCCCCChhHH
Confidence 2344455555 78888888776654221000 0112334 4888888888864331
Q ss_pred --EEeccccccccCCCCcCCCCccEEeeecCCCCCCChh------hhcCCCCcEEEEecCc
Q 041843 637 --LKIDYKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTF------LVFAPNLKSISVRDCD 689 (800)
Q Consensus 637 --l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~------l~~l~~L~~L~l~~~~ 689 (800)
++..+.. ..++|+.|++++| .++..+. +..+++|+.|++++|.
T Consensus 214 ~~l~~~l~~---------~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 214 AELAYIFSS---------IPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHHHHH---------SCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHhc---------CCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 1111111 1358888888887 4555432 3567889999998875
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=7.7e-14 Score=148.22 Aligned_cols=156 Identities=20% Similarity=0.237 Sum_probs=126.3
Q ss_pred eEEEccccccCCCCCCCCCCcceEEEeecCCCccccccccc-CCCCCcEEEccCcccccccc-ccccccccccEEeccCC
Q 041843 422 RRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQ-SMPCLTVLKMSDNIMLRQLP-TGISKLVSLQLLDISYT 499 (800)
Q Consensus 422 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~ 499 (800)
+.++.+++.+..+|... .+.++.|++++|.++.+++..|. .+++|++|+|++| .+..+| ..+.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC
Confidence 57899999999988522 35689999999999999988887 9999999999999 666665 56999999999999999
Q ss_pred CCcccch-hhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEE
Q 041843 500 SVTGLPE-GLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEIT 578 (800)
Q Consensus 500 ~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 578 (800)
.++.+|. .+..+.+|++|++++|. +..+++..+.++++|++|++++|.+..... .....+..+++|+.|+++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~------~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPV------ELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCG------GGTC----CTTCCEEECC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCH------HHhcCcccCCcCCEEECC
Confidence 9999876 58999999999999886 567766669999999999999998875210 112222678999999999
Q ss_pred eccchhHH
Q 041843 579 FRSFEAYQ 586 (800)
Q Consensus 579 ~~~~~~~~ 586 (800)
.|.+..++
T Consensus 172 ~N~l~~l~ 179 (361)
T 2xot_A 172 SNKLKKLP 179 (361)
T ss_dssp SSCCCCCC
T ss_pred CCCCCccC
Confidence 98876543
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=8e-14 Score=155.14 Aligned_cols=131 Identities=24% Similarity=0.280 Sum_probs=68.6
Q ss_pred EEEEcCCCccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccc
Q 041843 400 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLR 479 (800)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~ 479 (800)
.+...+..+..+|..+. ++++.|++++|.+..+| ..+++|++|++++|.++.+|. +.. +|++|++++| .+.
T Consensus 63 ~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N-~l~ 133 (571)
T 3cvr_A 63 ELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNN-QLT 133 (571)
T ss_dssp EEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSS-CCS
T ss_pred EEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCC-cCC
Confidence 34444445555544332 45555555555555555 345555555555555555544 222 5555555555 444
Q ss_pred cccccccccccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCC
Q 041843 480 QLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVG 550 (800)
Q Consensus 480 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 550 (800)
.+|. .+++|++|++++|.|+.+|. .+++|++|++++|. +..+|. +. ++|++|++++|.+.
T Consensus 134 ~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 134 MLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCS
T ss_pred CCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCC
Confidence 4554 45555555555555555554 34555555555543 344554 32 55555555555544
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=2.1e-14 Score=152.85 Aligned_cols=161 Identities=17% Similarity=0.225 Sum_probs=118.3
Q ss_pred cccceEEEccccccCCCC------CCCCCC-cceEEEeecCCCcccccccccCC-----CCCcEEEccCccccccccccc
Q 041843 418 WEMGRRLSLMKNSIGNLP------TVPTCP-HLLTLFLNDNPLRTITGGFFQSM-----PCLTVLKMSDNIMLRQLPTGI 485 (800)
Q Consensus 418 ~~~l~~l~l~~~~~~~l~------~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~Ls~~~~~~~lp~~i 485 (800)
..+++.|++++|.+...+ .+..++ +|++|++++|.+....+..+..+ ++|++|++++|......+..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 345999999999998775 256777 89999999999888766555554 999999999994333445544
Q ss_pred cc----c-ccccEEeccCCCCcccch-h----hhc-CccCceeccccccccc----ccchhhhCCCC-CCcEEEeeecCC
Q 041843 486 SK----L-VSLQLLDISYTSVTGLPE-G----LKA-LVNLKCLNLDWADELV----EVPQQLLSNFS-RLRVLRMFATGV 549 (800)
Q Consensus 486 ~~----L-~~L~~L~L~~~~i~~lp~-~----i~~-l~~L~~L~l~~~~~l~----~lp~~~~~~L~-~L~~L~l~~~~~ 549 (800)
+. + ++|++|++++|.++..+. . +.. .++|++|++++|..-. .++.. +..++ +|++|++++|.+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-LAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-HHTSCTTCCEEECTTSCG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-HhcCCccccEeeecCCCC
Confidence 44 4 899999999999988654 2 333 3699999999886432 33333 45665 999999999987
Q ss_pred CCCCcccccccchHHHhhCC-CCCcEEEEEeccchh
Q 041843 550 GSYGRFSSRYVNVAEELLGL-KYLEVLEITFRSFEA 584 (800)
Q Consensus 550 ~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~ 584 (800)
..... ......+..+ ++|+.|+++.|.+..
T Consensus 180 ~~~~~-----~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 180 ASKNC-----AELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp GGSCH-----HHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred chhhH-----HHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 64210 0233455666 599999999998765
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=2.9e-13 Score=126.63 Aligned_cols=128 Identities=22% Similarity=0.224 Sum_probs=94.3
Q ss_pred ccceEEEccccccC--CCCC-CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccc-ccccccccccccEE
Q 041843 419 EMGRRLSLMKNSIG--NLPT-VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQ-LPTGISKLVSLQLL 494 (800)
Q Consensus 419 ~~l~~l~l~~~~~~--~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~-lp~~i~~L~~L~~L 494 (800)
++++.|++++|.+. .+|. +..+++|++|++++|.++.+ ..+..+++|++|++++| .+.. +|..+.++++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence 56778888888876 6765 36778888888888887776 34777888888888888 4444 67666678888888
Q ss_pred eccCCCCcccc--hhhhcCccCceecccccccccccch---hhhCCCCCCcEEEeeecCCC
Q 041843 495 DISYTSVTGLP--EGLKALVNLKCLNLDWADELVEVPQ---QLLSNFSRLRVLRMFATGVG 550 (800)
Q Consensus 495 ~L~~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~---~~~~~L~~L~~L~l~~~~~~ 550 (800)
++++|.++.+| ..+..+++|++|++++|. +..+|. ..+..+++|++|++.+|...
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888887766 567778888888888775 455555 34777888888888777654
No 127
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.43 E-value=1e-11 Score=133.69 Aligned_cols=287 Identities=15% Similarity=0.097 Sum_probs=176.5
Q ss_pred CcccchhHHHHHHHHHhcc---CCCce--EEEEEcCCCCcHHHHHHHHHhhcccCCCC-CCEEEEEEEcCccCHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ---EPAAG--IIGLYGMGGVGKTTLLTQINNKFVDNPTD-FDYVIWVVVSKDLQLEKIQET 135 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~---~~~~~--vv~I~G~~GiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~ 135 (800)
..++||+++++++.+++.. +.... .+.|+|++|+||||+|+++++.. ... -..++|++++...+...+...
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 6799999999999998865 22334 89999999999999999999987 232 246778888787788889999
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhc--CCceEEEEccccch--hhhhhcCCcC---C----CCcEEEEEeCCcccc
Q 041843 136 IGKKIGLYTDSWKSKSLEEKAQDIFKTLS--KKKFALLLDDLWER--VDLKKIGVPL---P----KNSAVVFTTRFVDVC 204 (800)
Q Consensus 136 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~--~~~~~~~~~~---~----~~s~iivTtR~~~~~ 204 (800)
++..++..... ......+....+.+.+. +++.+||+|+++.. ..+..+...+ . .+..||++|+.....
T Consensus 94 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 94 IARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 99888653221 23345566666666654 56899999999653 2233322111 1 366788888765432
Q ss_pred cccC-------ccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHh---------CCChhHHHHHHHHHh
Q 041843 205 GGME-------ARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKEC---------GGLPLALIIIGRAMA 268 (800)
Q Consensus 205 ~~~~-------~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plai~~~~~~l~ 268 (800)
..+. ....+.+++++.++..+++...+.... ....-.++....+++.+ +|.|..+..+.....
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 2221 113699999999999999988764311 00111267888999999 798865544433221
Q ss_pred c-----C---CCHHHHHHHHHHHHhhhhccCCChhHHHHHHhhhccCCChhhHHHHHhHhccCC---CCcccchHHHHHH
Q 041843 269 Y-----K---KTPEEWRYAIEVLRRSASEFAGLGKEVYSLLKFSYDCLPNDAIRSCFLYCCLYP---EDYSIDKRDLIDC 337 (800)
Q Consensus 269 ~-----~---~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~l~~~~fp---~~~~i~~~~li~~ 337 (800)
. . -+.+.......... ...+.-.+..|++ +.+.++..++.+. .+..+....+...
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~ 317 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEES 317 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHH
Confidence 1 1 12233322222111 0111223455666 5666666565443 2224555555443
Q ss_pred HHh----cCCccccccchhhhHHHHHHHHHHhcccccc
Q 041843 338 WMC----EGFLEEDKFGTQNRGSHIVTTLVRACLLEEV 371 (800)
Q Consensus 338 w~a----~g~i~~~~~~~~~~~~~~~~~L~~~~ll~~~ 371 (800)
+.. .|... -.......+++.|.+.+++...
T Consensus 318 ~~~~~~~~~~~~----~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 318 YKIVCEEYGERP----RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHHTTCCC----CCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHcCCCC----CCHHHHHHHHHHHHhCCCeEEe
Confidence 322 12111 1234567889999999999874
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=5.9e-13 Score=148.18 Aligned_cols=134 Identities=28% Similarity=0.353 Sum_probs=98.4
Q ss_pred cceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccCC
Q 041843 420 MGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYT 499 (800)
Q Consensus 420 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~ 499 (800)
+++.|++++|.+..+|... +++|++|++++|.++.+| ..+++|++|++++| .+..+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 6778888888888777522 378888888888888777 24678888888888 6667887 665 8888888888
Q ss_pred CCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEe
Q 041843 500 SVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITF 579 (800)
Q Consensus 500 ~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 579 (800)
.++.+|. .+++|+.|++++|. +..+|. .+++|++|++++|.+... +. +. ++|+.|+++.
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~~l----------p~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLTFL----------PE-LP--ESLEALDVST 189 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCC----------CC-CC--TTCCEEECCS
T ss_pred cCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCCCc----------ch-hh--CCCCEEECcC
Confidence 8888887 67888888888775 456765 567888888888876531 11 22 6667777666
Q ss_pred ccch
Q 041843 580 RSFE 583 (800)
Q Consensus 580 ~~~~ 583 (800)
|.++
T Consensus 190 N~L~ 193 (571)
T 3cvr_A 190 NLLE 193 (571)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 6554
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=2.4e-13 Score=128.13 Aligned_cols=140 Identities=21% Similarity=0.240 Sum_probs=74.9
Q ss_pred CCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccCCCCcccchhh-hcCcc
Q 041843 435 PTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEGL-KALVN 513 (800)
Q Consensus 435 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i-~~l~~ 513 (800)
+.+.++.+|+.|++++|.++.++ .+....++|++|++++| .+..+ ..+..+++|++|++++|.++.+|..+ +.+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 34445556666666666655553 22222236666666666 44444 35566666666666666666655443 56666
Q ss_pred Cceecccccccccccch-hhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccchh
Q 041843 514 LKCLNLDWADELVEVPQ-QLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEA 584 (800)
Q Consensus 514 L~~L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 584 (800)
|++|++++|. +..+|. ..+..+++|++|++++|.+..... .....+..+++|+.|+++.|....
T Consensus 90 L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~------~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKH------YRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTT------HHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHh------HHHHHHHHCCccceeCCCcCCHHH
Confidence 6666666553 355554 125566666666666665432110 111235566666666666665543
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=3.7e-13 Score=123.09 Aligned_cols=123 Identities=24% Similarity=0.237 Sum_probs=94.2
Q ss_pred ccceEEEccccccC--CCCC-CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccc-ccccccccccccEE
Q 041843 419 EMGRRLSLMKNSIG--NLPT-VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQ-LPTGISKLVSLQLL 494 (800)
Q Consensus 419 ~~l~~l~l~~~~~~--~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~-lp~~i~~L~~L~~L 494 (800)
++++.|++++|.+. .+|. +..+++|++|++++|.++.+ ..+..+++|++|++++| .+.. +|..++.+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEE
Confidence 57788888888887 6664 47788888888888888777 34778888888888888 4444 77777778888888
Q ss_pred eccCCCCcccc--hhhhcCccCceecccccccccccch---hhhCCCCCCcEEEee
Q 041843 495 DISYTSVTGLP--EGLKALVNLKCLNLDWADELVEVPQ---QLLSNFSRLRVLRMF 545 (800)
Q Consensus 495 ~L~~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~---~~~~~L~~L~~L~l~ 545 (800)
++++|.++.+| ..++.+++|++|++++|. +..+|. ..++.+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 88888888765 678888888888888775 455655 447778888887764
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=3.3e-13 Score=127.22 Aligned_cols=134 Identities=19% Similarity=0.228 Sum_probs=116.2
Q ss_pred ccccccccceEEEccccccCCCCCCCCCC-cceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccc-ccccc
Q 041843 413 ADVRGWEMGRRLSLMKNSIGNLPTVPTCP-HLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGI-SKLVS 490 (800)
Q Consensus 413 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i-~~L~~ 490 (800)
+.+....+++.|++++|.+..++.+..+. +|++|++++|.++.+ ..|..+++|++|++++| .+..+|..+ +.+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC-cccccCcchhhcCCC
Confidence 34456678999999999999998877766 999999999999988 34899999999999999 777887655 89999
Q ss_pred ccEEeccCCCCcccch--hhhcCccCceecccccccccccchh---hhCCCCCCcEEEeeecCCC
Q 041843 491 LQLLDISYTSVTGLPE--GLKALVNLKCLNLDWADELVEVPQQ---LLSNFSRLRVLRMFATGVG 550 (800)
Q Consensus 491 L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~---~~~~L~~L~~L~l~~~~~~ 550 (800)
|++|++++|.+..+|. .++.+++|++|++++|. +..+|.. +++.+++|++|++..|...
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999999999987 89999999999999886 4677764 5789999999999988653
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=5e-12 Score=118.16 Aligned_cols=133 Identities=24% Similarity=0.236 Sum_probs=116.9
Q ss_pred cccEEEEcCCCcc--ccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccC
Q 041843 397 KEGFLVYAGSGLT--EAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSD 474 (800)
Q Consensus 397 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~ 474 (800)
.-+.+...+..+. .+|..+..+++++.|++++|.+..++.+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 104 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence 3466777777887 88888889999999999999998888899999999999999999986666678899999999999
Q ss_pred cccccccc--ccccccccccEEeccCCCCcccch----hhhcCccCceecccccccccccchh
Q 041843 475 NIMLRQLP--TGISKLVSLQLLDISYTSVTGLPE----GLKALVNLKCLNLDWADELVEVPQQ 531 (800)
Q Consensus 475 ~~~~~~lp--~~i~~L~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~l~~~~~l~~lp~~ 531 (800)
| .+..+| ..+..+++|++|++++|.++.+|. .+..+++|++|++++|. ..++|.+
T Consensus 105 N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 105 N-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp S-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred C-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 9 778876 789999999999999999999887 78999999999999885 4666653
No 133
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.33 E-value=2.5e-11 Score=121.46 Aligned_cols=195 Identities=16% Similarity=0.150 Sum_probs=116.0
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
..++||+.+++.+..++..+...+.+.|+|++|+||||+|+++++.... ...+.. ..+.. ... ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~-~~~~~~---~~~~~---~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-ETGITA---TPCGV---CDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC-TTCSCS---SCCSC---SHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-CCCCCC---CCCcc---cHH-HHHHhccCC
Confidence 4689999999999999987644568999999999999999999987621 111100 00000 000 000000000
Q ss_pred CC--CCCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccc--hhhhhhcC---CcCCCCcEEEEEeCCcccccc--c
Q 041843 142 LY--TDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWE--RVDLKKIG---VPLPKNSAVVFTTRFVDVCGG--M 207 (800)
Q Consensus 142 ~~--~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~~~~~~---~~~~~~s~iivTtR~~~~~~~--~ 207 (800)
.. .-.............+.+.+ .+++.+||+||++. ...+..+. ...+.+..+|+||+....... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 00 00000000111122222222 35679999999964 23333332 223447888888876443211 1
Q ss_pred CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHH
Q 041843 208 EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAM 267 (800)
Q Consensus 208 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 267 (800)
.....+.+++++.++..+++...+.......+ .+..+.|++.++|+|..+..+...+
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22357999999999999999988754332222 5778899999999999888776543
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=4.5e-12 Score=121.18 Aligned_cols=128 Identities=20% Similarity=0.262 Sum_probs=97.8
Q ss_pred eEEEccccccCCCCCCCCCCcceEEEeecCCCcccccc-cccCCCCCcEEEccCccccccccccccccccccEEeccCCC
Q 041843 422 RRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGG-FFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTS 500 (800)
Q Consensus 422 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~ 500 (800)
+.++++++.+..+|... ..+|++|++++|.+..+++. +|..+++|++|+|++|......|..+.++++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 57788888888887522 23888889988888888764 57888889999998884333347788888889999999888
Q ss_pred Ccccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCC
Q 041843 501 VTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGS 551 (800)
Q Consensus 501 i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 551 (800)
|+.+|.. +..+++|++|++++|.. ..+++..+..+++|++|++.+|.+..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCC-CEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcC-CeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 8886554 78888888888887754 44544447888888888888887654
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=3.9e-12 Score=121.53 Aligned_cols=124 Identities=22% Similarity=0.333 Sum_probs=81.5
Q ss_pred eEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccc-ccccccccccEEeccCCC
Q 041843 422 RRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLP-TGISKLVSLQLLDISYTS 500 (800)
Q Consensus 422 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~ 500 (800)
+.++++++.+..+|... .++|++|++++|.++.+|. .|..+++|++|+|++| .+..++ ..|.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 45667777777766421 2567777777777776663 3667777777777777 444443 456777777777777777
Q ss_pred Ccccch-hhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCC
Q 041843 501 VTGLPE-GLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGV 549 (800)
Q Consensus 501 i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~ 549 (800)
|+.+|. .+..+++|++|++++|. +..+|.+.+..+++|++|++.+|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 777554 46677777777777654 4566665566677777777766654
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=7.9e-12 Score=119.38 Aligned_cols=126 Identities=19% Similarity=0.302 Sum_probs=106.5
Q ss_pred eEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccCCCCcccch-hhhcCccCceeccccc
Q 041843 444 LTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPE-GLKALVNLKCLNLDWA 522 (800)
Q Consensus 444 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~ 522 (800)
++++++++.++.+|..+ .++|++|++++| .+..+|..+.++.+|++|+|++|.|+.++. .+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67899999999988764 368999999999 788999999999999999999999999764 5899999999999987
Q ss_pred ccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccch
Q 041843 523 DELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFE 583 (800)
Q Consensus 523 ~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 583 (800)
. +..+|+..+.++++|++|++++|.+.. .....+..+++|+.|+++.|.+.
T Consensus 89 ~-l~~i~~~~f~~l~~L~~L~L~~N~l~~---------~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 R-LRCIPPRTFDGLKSLRLLSLHGNDISV---------VPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp C-CCBCCTTTTTTCTTCCEEECCSSCCCB---------CCTTTTTTCTTCCEEECCSSCEE
T ss_pred c-cCEeCHHHhCCCCCCCEEECCCCCCCe---------eChhhhhcCccccEEEeCCCCee
Confidence 5 677777678999999999999998874 33445778899999999988764
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=9.2e-12 Score=117.45 Aligned_cols=128 Identities=27% Similarity=0.450 Sum_probs=104.4
Q ss_pred ceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccccc-ccccccccEEeccCC
Q 041843 421 GRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDISYT 499 (800)
Q Consensus 421 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~~L~L~~~ 499 (800)
.+.+++.++.+..+|. .-.++|+.|++++|.++.+++..|..+++|++|++++| .+..+|.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence 3567788888888774 23378999999999998888887888999999999999 66666654 688999999999999
Q ss_pred CCcccchh-hhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCC
Q 041843 500 SVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGS 551 (800)
Q Consensus 500 ~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 551 (800)
.++.+|.. +..+++|++|++++|. +..+|...+.++++|++|++.+|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99987765 6888999999999774 578888767889999999998887653
No 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=6.6e-12 Score=114.69 Aligned_cols=122 Identities=25% Similarity=0.244 Sum_probs=108.5
Q ss_pred ccEEEEcCCCcc--ccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCc
Q 041843 398 EGFLVYAGSGLT--EAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDN 475 (800)
Q Consensus 398 ~~~~~~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~ 475 (800)
-+.+...+..+. .+|..+..+++++.|++++|.+..++.+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence 456777777877 788888899999999999999998888999999999999999999855666788999999999999
Q ss_pred ccccccc--ccccccccccEEeccCCCCcccch----hhhcCccCceeccc
Q 041843 476 IMLRQLP--TGISKLVSLQLLDISYTSVTGLPE----GLKALVNLKCLNLD 520 (800)
Q Consensus 476 ~~~~~lp--~~i~~L~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~l~ 520 (800)
.+..+| ..++.+++|++|++++|.++.+|. .++.+++|+.|+++
T Consensus 99 -~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 99 -KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred -cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 677765 889999999999999999999876 68999999999986
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.29 E-value=1.3e-12 Score=151.15 Aligned_cols=110 Identities=25% Similarity=0.311 Sum_probs=59.5
Q ss_pred CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccCCCCcccchhhhcCccCce
Q 041843 437 VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKC 516 (800)
Q Consensus 437 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 516 (800)
+..+++|++|+|++|.+..+++.++ .+++|++|+|++| .+..+|..|++|++|++|+|++|.|+.+|..++.|.+|++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 4455555555555555555554432 5555555555555 4445555555555555555555555555555555555555
Q ss_pred ecccccccccccchhhhCCCCCCcEEEeeecCCC
Q 041843 517 LNLDWADELVEVPQQLLSNFSRLRVLRMFATGVG 550 (800)
Q Consensus 517 L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 550 (800)
|+|++|. +..+|.. +++|++|++|++++|.+.
T Consensus 298 L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 298 FYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp EECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EECCCCC-CCccChh-hhcCCCccEEeCCCCccC
Confidence 5555443 3455554 555555555555555544
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=1.3e-11 Score=118.05 Aligned_cols=124 Identities=24% Similarity=0.354 Sum_probs=108.0
Q ss_pred cEEEEcCCCccccCccccccccceEEEccccccCCCCC---CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCc
Q 041843 399 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPT---VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDN 475 (800)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~ 475 (800)
+.+...+.++.++|..+.. +++.|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4566777888889876653 89999999999988874 789999999999999999998888999999999999999
Q ss_pred cccccc-cccccccccccEEeccCCCCccc-chhhhcCccCceecccccccc
Q 041843 476 IMLRQL-PTGISKLVSLQLLDISYTSVTGL-PEGLKALVNLKCLNLDWADEL 525 (800)
Q Consensus 476 ~~~~~l-p~~i~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l 525 (800)
.+..+ |..+.++++|++|+|++|.++.+ |..+..+++|++|++++|...
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 -KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred -cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 55555 45589999999999999999985 778999999999999988643
No 141
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.27 E-value=7.5e-11 Score=116.03 Aligned_cols=182 Identities=13% Similarity=0.066 Sum_probs=115.1
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
..++||++.++++.+++... ..+.+.|+|++|+|||++|+++++.... ...-...+.+..+.......+...+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-CCCCEEEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHhc-cccccceEEeccccccChHHHHHHHHHHhc
Confidence 56899999999999998876 3445999999999999999999987511 111122333444333333333222222111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hh---hhhcCCcCCCCcEEEEEeCCccccc--ccCccceEE
Q 041843 142 LYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VD---LKKIGVPLPKNSAVVFTTRFVDVCG--GMEARRKFK 214 (800)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~---~~~~~~~~~~~s~iivTtR~~~~~~--~~~~~~~~~ 214 (800)
... .-.+++.+||+||++.. .. +..+....+.+.++|+||+...... .......+.
T Consensus 95 ~~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 95 TAP-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp SCC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred ccC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 100 01256899999999653 22 2222222345788888888653211 112234789
Q ss_pred eccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHH
Q 041843 215 VACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGR 265 (800)
Q Consensus 215 l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 265 (800)
+.+++.++..+++.+.+.......+ ++....+++.++|.|..+..+..
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999987754332222 57788899999999986554443
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=1.4e-12 Score=145.95 Aligned_cols=123 Identities=22% Similarity=0.238 Sum_probs=92.4
Q ss_pred cceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccCCCCcccchhhhcCccCceecccc
Q 041843 442 HLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDW 521 (800)
Q Consensus 442 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~ 521 (800)
.|++|++++|.++.+|. |..+++|++|+|++| .+..+|..++++++|++|+|++|.|+.+| .++.+++|++|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 47888888888888765 788888888888888 66788888888888888888888888888 788888888888887
Q ss_pred ccccccc--chhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEE
Q 041843 522 ADELVEV--PQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLE 576 (800)
Q Consensus 522 ~~~l~~l--p~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 576 (800)
|. +..+ |.. +++|++|++|++++|.+..... .....+..+++|+.|+
T Consensus 518 N~-l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~------~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NR-LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG------IQERLAEMLPSVSSIL 566 (567)
T ss_dssp SC-CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS------CTTHHHHHCTTCSEEE
T ss_pred CC-CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc------HHHHHHHHCcccCccC
Confidence 75 4555 554 7888888888888887654321 1223344467777764
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=8.3e-12 Score=144.45 Aligned_cols=140 Identities=21% Similarity=0.207 Sum_probs=102.5
Q ss_pred cccCccccccccceEEEccccccCCCC-CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccc
Q 041843 409 TEAPADVRGWEMGRRLSLMKNSIGNLP-TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISK 487 (800)
Q Consensus 409 ~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~ 487 (800)
...+..+..+..++.|++++|.+..+| .+..+++|++|+|++|.++.+|.. |..+++|++|+|++| .+..+|..|++
T Consensus 214 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~ 291 (727)
T 4b8c_D 214 VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGS 291 (727)
T ss_dssp --------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGG
T ss_pred ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcC
Confidence 334456677788889999999888887 466888899999999988877765 688899999999998 66788888889
Q ss_pred cccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCC-CCcEEEeeecCCCC
Q 041843 488 LVSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFS-RLRVLRMFATGVGS 551 (800)
Q Consensus 488 L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~-~L~~L~l~~~~~~~ 551 (800)
|.+|++|+|++|.|+.+|..++.|++|++|+|++|.....+|.. +..+. .+..|++.+|.+..
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcccC
Confidence 99999999999988888888889999999999888654444443 43332 12235666665543
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=5.5e-11 Score=112.08 Aligned_cols=125 Identities=26% Similarity=0.447 Sum_probs=107.5
Q ss_pred EEEEcCCCccccCccccccccceEEEccccccCCCCC--CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccc
Q 041843 400 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIGNLPT--VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIM 477 (800)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~ 477 (800)
.+...+.++..+|..+. ++++.|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|++++| .
T Consensus 11 ~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~ 87 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-K 87 (177)
T ss_dssp EEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-C
Confidence 45666777888875544 689999999999988885 688999999999999999999988899999999999999 6
Q ss_pred ccccccc-ccccccccEEeccCCCCcccchh-hhcCccCceecccccccccc
Q 041843 478 LRQLPTG-ISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDWADELVE 527 (800)
Q Consensus 478 ~~~lp~~-i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~ 527 (800)
+..+|.. +.++++|++|++++|.++.+|.. +..+++|++|++++|.....
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 6676654 68999999999999999998876 47899999999999865443
No 145
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=2.2e-11 Score=136.34 Aligned_cols=121 Identities=24% Similarity=0.261 Sum_probs=107.7
Q ss_pred cceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccCC
Q 041843 420 MGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYT 499 (800)
Q Consensus 420 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~ 499 (800)
.++.|++++|.+..+|.+..+++|++|++++|.++.+|.. |+.+++|++|+|++| .+..+| .++++++|++|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 4789999999999999999999999999999999988775 899999999999999 777899 8999999999999999
Q ss_pred CCccc--chhhhcCccCceecccccccccccchh---hhCCCCCCcEEEe
Q 041843 500 SVTGL--PEGLKALVNLKCLNLDWADELVEVPQQ---LLSNFSRLRVLRM 544 (800)
Q Consensus 500 ~i~~l--p~~i~~l~~L~~L~l~~~~~l~~lp~~---~~~~L~~L~~L~l 544 (800)
.|+.+ |..++.+++|+.|++++|. +..+|+. ++..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 99998 8999999999999999886 4555543 2445899999864
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=4.8e-13 Score=128.85 Aligned_cols=108 Identities=22% Similarity=0.333 Sum_probs=70.7
Q ss_pred CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEeccCCCCcccchhhhcCccCce
Q 041843 437 VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTGLPEGLKALVNLKC 516 (800)
Q Consensus 437 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 516 (800)
+..+++|++|++++|.++.++ .+..+++|++|++++| .+..+|..+..+++|++|++++|.++.+| .++.+++|++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 556667777777777666655 3666777777777777 55666666666677777777777776666 5666777777
Q ss_pred ecccccccccccch-hhhCCCCCCcEEEeeecCC
Q 041843 517 LNLDWADELVEVPQ-QLLSNFSRLRVLRMFATGV 549 (800)
Q Consensus 517 L~l~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~ 549 (800)
|++++|. +..+|. ..+.++++|++|++.+|.+
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 7777654 344443 2356677777777766654
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=7.1e-13 Score=127.63 Aligned_cols=134 Identities=25% Similarity=0.281 Sum_probs=113.1
Q ss_pred CccccCccccccccceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccccccc
Q 041843 407 GLTEAPADVRGWEMGRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGIS 486 (800)
Q Consensus 407 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~ 486 (800)
.+..+|..+..+++++.|++++|.+..+|.+..+++|++|++++|.++.++.. +..+++|++|++++| .+..+| .+.
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~-~~~ 112 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIASLS-GIE 112 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEE-ECCCHH-HHH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCC-cCCcCC-ccc
Confidence 45556557788899999999999999999889999999999999999988764 677899999999999 777788 699
Q ss_pred ccccccEEeccCCCCcccch--hhhcCccCceecccccccccccch---------hhhCCCCCCcEEE
Q 041843 487 KLVSLQLLDISYTSVTGLPE--GLKALVNLKCLNLDWADELVEVPQ---------QLLSNFSRLRVLR 543 (800)
Q Consensus 487 ~L~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~---------~~~~~L~~L~~L~ 543 (800)
.+++|++|++++|.++.+|. .+..+++|++|++++|......|. .++..+++|++|+
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999999999999998775 789999999999998865333332 2366788888876
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=2.3e-10 Score=107.01 Aligned_cols=103 Identities=21% Similarity=0.336 Sum_probs=67.7
Q ss_pred eEEEeecCCCcccccccccCCCCCcEEEccCccccccc-cccccccccccEEeccCCCCcccchh-hhcCccCceecccc
Q 041843 444 LTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDW 521 (800)
Q Consensus 444 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~ 521 (800)
+.+++++|.+..+|..+ .++|++|+|++| .+..+ |..+.++++|++|+|++|+|+.+|.. +..+++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56666666666666543 256777777777 44444 55666777777777777777776655 36677777777776
Q ss_pred cccccccchhhhCCCCCCcEEEeeecCCCC
Q 041843 522 ADELVEVPQQLLSNFSRLRVLRMFATGVGS 551 (800)
Q Consensus 522 ~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 551 (800)
|. +..+|...+.++++|++|++.+|.+..
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred Cc-cceeCHHHhccccCCCEEEeCCCCccc
Confidence 54 456666656777777777777776553
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=3.6e-10 Score=105.40 Aligned_cols=103 Identities=24% Similarity=0.359 Sum_probs=68.8
Q ss_pred ceEEEeecCCCcccccccccCCCCCcEEEccCccccccc-cccccccccccEEeccCCCCcccchh-hhcCccCceeccc
Q 041843 443 LLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLD 520 (800)
Q Consensus 443 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~ 520 (800)
.+++++++|.++.+|..+ .++|++|+|++| .+..+ |..+.++++|++|+|++|+|+.+|.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 356666666666666543 256777777777 44444 55567777777777777777776654 4677777777777
Q ss_pred ccccccccchhhhCCCCCCcEEEeeecCCC
Q 041843 521 WADELVEVPQQLLSNFSRLRVLRMFATGVG 550 (800)
Q Consensus 521 ~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 550 (800)
+|. +..+|+..+.++++|++|++++|.+.
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQ-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCc-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 664 46666655677777777777777654
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=3.3e-10 Score=105.63 Aligned_cols=101 Identities=27% Similarity=0.425 Sum_probs=71.6
Q ss_pred ceEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccccc-ccccccccEEeccCC
Q 041843 421 GRRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDISYT 499 (800)
Q Consensus 421 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~~L~L~~~ 499 (800)
.+.++++++.+..+|... .++|++|++++|.++.+++..|..+++|++|+|++| .+..+|.. +.++++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 356777777777777422 367777777777777777766777777777777777 55565544 467777777777777
Q ss_pred CCcccchh-hhcCccCceecccccc
Q 041843 500 SVTGLPEG-LKALVNLKCLNLDWAD 523 (800)
Q Consensus 500 ~i~~lp~~-i~~l~~L~~L~l~~~~ 523 (800)
.|+.+|.. +..+++|++|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 77777654 6777777777777664
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=4e-10 Score=105.38 Aligned_cols=105 Identities=23% Similarity=0.321 Sum_probs=86.3
Q ss_pred eEEEccccccCCCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccccc-ccccccccEEeccCCC
Q 041843 422 RRLSLMKNSIGNLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTG-ISKLVSLQLLDISYTS 500 (800)
Q Consensus 422 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~~L~L~~~~ 500 (800)
+.++++++.+..+|... .++|++|++++|.++.+++..|..+++|++|+|++| .+..+|.. +.++++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 57888888888888632 288999999999999988888889999999999999 77777765 5789999999999999
Q ss_pred Ccccchh-hhcCccCceecccccccccccc
Q 041843 501 VTGLPEG-LKALVNLKCLNLDWADELVEVP 529 (800)
Q Consensus 501 i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp 529 (800)
|+.+|.. +..+++|++|++++|.. ...+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~-~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPW-DCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCB-CTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCCc-cccc
Confidence 9998875 88899999999998753 4334
No 152
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=9.7e-10 Score=114.78 Aligned_cols=182 Identities=14% Similarity=0.129 Sum_probs=112.4
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
..++|++..++.+.+++..+ ..+.+.|+|++|+|||++|+.+++.... ......+++++.+.......+. ++...+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG-NMPHMIISGMPGIGKTTSVHCLAHELLG-RSYADGVLELNASDDRGIDVVR-NQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC-CCCCEEEECSTTSSHHHHHHHHHHHHHG-GGHHHHEEEECTTSCCSHHHHH-THHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCCEEEecCccccChHHHH-HHHHHHH
Confidence 56899999999999998876 3444999999999999999999988511 1111123333333322222211 1111110
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEccccch--hhhhhc---CCcCCCCcEEEEEeCCcccc-cc-cCccceE
Q 041843 142 LYTDSWKSKSLEEKAQDIFKTL-SKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTTRFVDVC-GG-MEARRKF 213 (800)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~--~~~~~~---~~~~~~~s~iivTtR~~~~~-~~-~~~~~~~ 213 (800)
... ..+ .+++.++|+||++.. .....+ ....+.+..+|+||+..... .. ......+
T Consensus 98 ~~~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 98 QKK----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp HBC----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred hcc----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 000 001 356899999999753 222222 22234577888888754321 11 1223589
Q ss_pred EeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhH-HHHHHH
Q 041843 214 KVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLA-LIIIGR 265 (800)
Q Consensus 214 ~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-i~~~~~ 265 (800)
.+.+++.++..+++...+.......+ ++....+++.++|.|.. +..+..
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999987654332222 57788999999999954 444433
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=2.1e-10 Score=119.95 Aligned_cols=102 Identities=24% Similarity=0.236 Sum_probs=50.9
Q ss_pred cccccEEeccCCCCcccchh-hhcCccCceecccccccccccchhhhCCCCCCc-EEEeeecCCCCCCcccccccchHHH
Q 041843 488 LVSLQLLDISYTSVTGLPEG-LKALVNLKCLNLDWADELVEVPQQLLSNFSRLR-VLRMFATGVGSYGRFSSRYVNVAEE 565 (800)
Q Consensus 488 L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~ 565 (800)
+.+|+.|+|++|.++.+|.. +..+.+|+.+++.++ +..++..+|.++.+|+ .+++.. .+.. .....
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~---------I~~~a 292 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTA---------IEFGA 292 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCE---------ECTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceE---------Echhh
Confidence 34555555555555554432 444555555555443 4445555555555555 555543 2221 22334
Q ss_pred hhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEe
Q 041843 566 LLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYF 628 (800)
Q Consensus 566 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 628 (800)
+.+|++|+.+++..+.+ ..++...|.++++|+.++.
T Consensus 293 F~~c~~L~~l~l~~n~i---------------------------~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 293 FMGCDNLRYVLATGDKI---------------------------TTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTEEEEEECSSCC---------------------------CEECTTTTCTTCCCCEEEC
T ss_pred hhCCccCCEEEeCCCcc---------------------------CccchhhhcCCcchhhhcc
Confidence 44455555555443333 2333356788888888763
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.99 E-value=1.6e-08 Score=105.38 Aligned_cols=174 Identities=10% Similarity=0.041 Sum_probs=107.8
Q ss_pred CCcccchhHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 136 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 136 (800)
-..|+|++..++++...+.. +.....+.|+|++|+|||++|+++++.. ... ..++.++......++...+
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~~l 84 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAAIL 84 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHHHH
Confidence 35799999999998887753 2244688999999999999999999876 222 2344433322222221111
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh--hhhhcC---Cc------------------CCCCcE
Q 041843 137 GKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV--DLKKIG---VP------------------LPKNSA 193 (800)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~~~---~~------------------~~~~s~ 193 (800)
... ..++.+|++|+++... ....+. .. ...+.+
T Consensus 85 -----------------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 85 -----------------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp -----------------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred -----------------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 100 1346688899986431 111110 00 001356
Q ss_pred EEEEeCCcccc-ccc-Cc-cceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHH
Q 041843 194 VVFTTRFVDVC-GGM-EA-RRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAM 267 (800)
Q Consensus 194 iivTtR~~~~~-~~~-~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 267 (800)
+|.||...... ..+ .. ...+.+.+++.+|..+++...+.......+ .+....+++.++|+|..+..+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66666643321 111 11 257899999999999999888754332222 6788999999999998877766554
No 155
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=3.3e-09 Score=110.93 Aligned_cols=181 Identities=17% Similarity=0.127 Sum_probs=112.5
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
..++|+++.++.+..++..+ ..+.+.|+|++|+||||+|+.+++.... ...-...+.+..+.......+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~------- 95 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG-SMPHLLFAGPPGVGKTTAALALARELFG-ENWRHNFLELNASDERGINVIRE------- 95 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-CCCEEEEESCTTSSHHHHHHHHHHHHHG-GGHHHHEEEEETTCHHHHHTTHH-------
T ss_pred HHhhCCHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCceEEeeccccCchHHHHH-------
Confidence 56899999999999998876 4456999999999999999999988511 11001123333222111111111
Q ss_pred CCCCCCCCCCHHHHHHHHHHH--h-cCCceEEEEccccch--hhhhh---cCCcCCCCcEEEEEeCCcccc-cc-cCccc
Q 041843 142 LYTDSWKSKSLEEKAQDIFKT--L-SKKKFALLLDDLWER--VDLKK---IGVPLPKNSAVVFTTRFVDVC-GG-MEARR 211 (800)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlvlDdv~~~--~~~~~---~~~~~~~~s~iivTtR~~~~~-~~-~~~~~ 211 (800)
....+... + .+++.++|+||++.. ..... +....+.+.++|+||...... .. .....
T Consensus 96 -------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 96 -------------KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp -------------HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred -------------HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 11111110 1 256889999999753 22222 222234577888888754321 11 11234
Q ss_pred eEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHHHH
Q 041843 212 KFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGRAM 267 (800)
Q Consensus 212 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 267 (800)
.+.+.+++.++..+++...+.......+ .+....+++.++|.|..+..+...+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 7899999999999999887754432223 6778899999999998665544433
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=2.1e-08 Score=107.05 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=113.4
Q ss_pred cceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc-cccccccccccEEec
Q 041843 420 MGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQLLDI 496 (800)
Q Consensus 420 ~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L 496 (800)
.+..+.+. +.+..++ .|.++ +|+.+.+..+ ++.++...|.++ +|+.+.+..+ +..+ +..|.++.+|+.+++
T Consensus 114 ~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 114 GYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEEC
T ss_pred CccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeec
Confidence 33444443 2344444 36665 6899998766 888888888875 6999998864 4444 456888999999999
Q ss_pred cCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEE
Q 041843 497 SYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLE 576 (800)
Q Consensus 497 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 576 (800)
..|.++.+|.......+|+.+.+..+ +..++..+|.++++|+.+.+..+ +.. .....+.+ .+|+.+.
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~---------I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VST---------IGQEAFRE-SGITTVK 254 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCE---------ECTTTTTT-CCCSEEE
T ss_pred CCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccC---------cccccccc-CCccEEE
Confidence 99999998877655789999999743 78888888999999999988654 221 12223333 5677776
Q ss_pred EEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccC
Q 041843 577 ITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCD 632 (800)
Q Consensus 577 l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 632 (800)
+. +.+ ..++...|..+++|+.+.+.++.
T Consensus 255 lp-~~i---------------------------~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 255 LP-NGV---------------------------TNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp EE-TTC---------------------------CEECTTTTTTCTTCCEEEEESSC
T ss_pred eC-CCc---------------------------cEEChhHhhCCCCCCEEEeCCcc
Confidence 63 111 12222457778888888887754
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=3e-08 Score=105.90 Aligned_cols=216 Identities=13% Similarity=0.143 Sum_probs=147.9
Q ss_pred ccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEEec
Q 041843 419 EMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDI 496 (800)
Q Consensus 419 ~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L 496 (800)
.+++.+.+..+ +..++ .|.++ +|+.+.+.. .++.+....|.+|.+|+.+++++| .+..+|.......+|+.+.+
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC
T ss_pred CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe
Confidence 46888887655 66665 36665 699999986 688999889999999999999998 78888876666799999999
Q ss_pred cCCCCcccch-hhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEE
Q 041843 497 SYTSVTGLPE-GLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVL 575 (800)
Q Consensus 497 ~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 575 (800)
..+ ++.++. .+.++.+|+.+.+..+ +..++..+|.+ .+|+.+.+.. .+.. .....+.++++|+.+
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~~---------I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-GVTN---------IASRAFYYCPELAEV 276 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET-TCCE---------ECTTTTTTCTTCCEE
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC-CccE---------EChhHhhCCCCCCEE
Confidence 854 777765 5788999999999864 68888888888 8999999943 3332 345678889999999
Q ss_pred EEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCC
Q 041843 576 EITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFR 655 (800)
Q Consensus 576 ~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~ 655 (800)
.+..+.... .....++...|..+++|+.+.+..+ +..++.... ..+.
T Consensus 277 ~l~~~~~~~----------------------~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF---------~~c~ 323 (401)
T 4fdw_A 277 TTYGSTFND----------------------DPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLL---------GGNR 323 (401)
T ss_dssp EEESSCCCC----------------------CTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTT---------TTCC
T ss_pred EeCCccccC----------------------CcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhh---------cCCC
Confidence 998654320 0011222245666777777777632 333322221 1345
Q ss_pred CccEEeeecCCCCCCCh--hhhcCCCCcEEEEecC
Q 041843 656 SLEEVTVDNCGNLKHLT--FLVFAPNLKSISVRDC 688 (800)
Q Consensus 656 ~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~~ 688 (800)
+|+.+.+.+ +++.+. .+..+ +|+.+.+.++
T Consensus 324 ~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 324 KVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp SCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred CccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 666666643 233332 23444 5666666553
No 158
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.89 E-value=2e-08 Score=107.07 Aligned_cols=192 Identities=15% Similarity=0.106 Sum_probs=111.4
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
..++|++..++.+...+..+.....+.|+|++|+||||+|+.+++.... ...... ..+... . ....+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~-~~~~~~---~~~~~~---~-~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-ETGITA---TPCGVC---D-NCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC-TTCSCS---SCCSSS---H-HHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-CCCCCC---CCCccc---H-HHHHHhccCC
Confidence 4699999999999999987644568899999999999999999987621 111100 000000 0 0011110000
Q ss_pred -----CCCC-CCCCCCHHHHHHHHHHH-hcCCceEEEEccccch--hhhhhc---CCcCCCCcEEEEEeCCcccc-c-cc
Q 041843 142 -----LYTD-SWKSKSLEEKAQDIFKT-LSKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTTRFVDVC-G-GM 207 (800)
Q Consensus 142 -----~~~~-~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~--~~~~~~---~~~~~~~s~iivTtR~~~~~-~-~~ 207 (800)
.... ........+....+... ..+++.++|+||++.. .....+ ....+.+..+|++|....-. . ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 0000 00111222222111110 1356789999999643 222222 22234467777777644321 1 11
Q ss_pred CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHH
Q 041843 208 EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIG 264 (800)
Q Consensus 208 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 264 (800)
.....+.+.+++.++..+++.+.+.......+ .+....+++.++|.|..+..+.
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 23367899999999999999887644332222 5678899999999998776554
No 159
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.3e-08 Score=103.33 Aligned_cols=167 Identities=7% Similarity=0.057 Sum_probs=107.3
Q ss_pred cccchhHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCC--C--CCEEEEEEEcCccCHHHHHHH
Q 041843 63 TVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT--D--FDYVIWVVVSKDLQLEKIQET 135 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~--~--f~~~~wv~~~~~~~~~~~~~~ 135 (800)
.+.|||+++++|...|.. ++..+.+.|+|++|+|||++|+.+++....... . --.++.+++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 378999999999988765 446789999999999999999999998732211 1 124567777777888899999
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHh---cCCceEEEEccccchhh---hhhcCC--cCCC-CcEEEEEeCCccccc-
Q 041843 136 IGKKIGLYTDSWKSKSLEEKAQDIFKTL---SKKKFALLLDDLWERVD---LKKIGV--PLPK-NSAVVFTTRFVDVCG- 205 (800)
Q Consensus 136 i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~---~~~~~~--~~~~-~s~iivTtR~~~~~~- 205 (800)
|.+++.... .......+.+..+.+.+ .++++++|||+++...+ +-.+.. .... ...||.++...+...
T Consensus 101 I~~~L~g~~--~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKEN--LCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCC--CCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 999986432 11222233444444443 45679999999975421 111111 0111 233444454332211
Q ss_pred --------ccCccceEEeccCChHHHHHHHHHHhC
Q 041843 206 --------GMEARRKFKVACLSDEDAWELFREKVG 232 (800)
Q Consensus 206 --------~~~~~~~~~l~~L~~~e~~~l~~~~~~ 232 (800)
.+ ....+.+.+++.+|..+++.+++.
T Consensus 179 ~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 124689999999999999988874
No 160
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=7e-09 Score=108.34 Aligned_cols=283 Identities=11% Similarity=0.024 Sum_probs=127.5
Q ss_pred cccceEEEcccccc-CCCCCCCC-CCcceEEEeecCCCc--ccccccccCCCCCcEEEccCccccccccccccc------
Q 041843 418 WEMGRRLSLMKNSI-GNLPTVPT-CPHLLTLFLNDNPLR--TITGGFFQSMPCLTVLKMSDNIMLRQLPTGISK------ 487 (800)
Q Consensus 418 ~~~l~~l~l~~~~~-~~l~~~~~-~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~------ 487 (800)
+.++..|.+.++-- ..+..+.. +++|++|+|++|.+. ..... .++.++.+.+..+ .+. +..|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~-~I~--~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN-FVP--AYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT-EEC--TTTTEEEETTEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccc-ccC--HHHhcccccccc
Confidence 44566666654311 11111122 667777777777765 22221 1222344444443 111 123444
Q ss_pred --cccccEEeccCCCCcccch-hhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCC-CCCcccccccchH
Q 041843 488 --LVSLQLLDISYTSVTGLPE-GLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVG-SYGRFSSRYVNVA 563 (800)
Q Consensus 488 --L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~-~~~~~~~~~~~~~ 563 (800)
+.+|+.|+|.. .++.++. .+..+++|+.|++.++. +..++..+|.++.++..+........ .... ...
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~------i~~ 169 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNR------WEH 169 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTT------TTT
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhcccc------ccc
Confidence 66666666666 5666554 35666666666666543 34556555665555554443221000 0000 001
Q ss_pred HHhhCCCCCc-EEEEEeccchhHHHhhhcc-cccccceecccccccCCccccccCc-CCcccCceEEeeccCCcceEEec
Q 041843 564 EELLGLKYLE-VLEITFRSFEAYQTFLSSQ-KLRSCTQALFLHEFCREESIGVADL-ADLEQLNTLYFRSCDWIKGLKID 640 (800)
Q Consensus 564 ~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~-~l~~~l~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~l~~~ 640 (800)
..+.++..|+ .+.+... ..++...... .....+..+.+.+.- .......+ ..+++|+++++.+|. +..++..
T Consensus 170 ~~f~~~~~L~~~i~~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~ 244 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVGAM--GKLEDEIMKAGLQPRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISKTN-ATTIPDF 244 (329)
T ss_dssp SCEEESCCCEEEEEECTT--CCHHHHHHHTTCCGGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTTBC-CCEECTT
T ss_pred cccccccccceeEEecCC--CcHHHHHhhcccCccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCCCC-cceecHh
Confidence 1122333333 2222211 1111111000 001112222222110 00000011 125677777777665 3333332
Q ss_pred cccccccCCCCcCCCCccEEeeecCCCCCCChh--hhcCCCCc-EEEEecCcchhHhhccCCCCCcCcccCccCCcCCcc
Q 041843 641 YKDMVQKSRQPCVFRSLEEVTVDNCGNLKHLTF--LVFAPNLK-SISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKL 717 (800)
Q Consensus 641 ~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~-~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L 717 (800)
.. ..+.+|++|.+.+. ++.++. +..+++|+ .+.+.+ .++.+.. ..+..+++|
T Consensus 245 aF---------~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~------------~aF~~c~~L 299 (329)
T 3sb4_A 245 TF---------AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF------------GAFMGCDNL 299 (329)
T ss_dssp TT---------TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT------------TTTTTCTTE
T ss_pred hh---------hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch------------hhhhCCccC
Confidence 22 13567777777663 555442 56777777 777765 3444322 345567778
Q ss_pred cEeeccCcccccccCC-CCCCCCCcceEe
Q 041843 718 QHLQLGGLGRLKSIYW-KPLPLPRLKELT 745 (800)
Q Consensus 718 ~~L~l~~~~~l~~~~~-~~~~~~~L~~L~ 745 (800)
+.|.+.+ .++..++. .+..+++|+.+.
T Consensus 300 ~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 8888754 45666665 334455555554
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.81 E-value=9.3e-09 Score=108.43 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=44.3
Q ss_pred EeecC-CCcccccccccCCCCCcEEEccC-cccccccc-ccccccccccEEeccCCCCcccch-hhhcCccCceeccccc
Q 041843 447 FLNDN-PLRTITGGFFQSMPCLTVLKMSD-NIMLRQLP-TGISKLVSLQLLDISYTSVTGLPE-GLKALVNLKCLNLDWA 522 (800)
Q Consensus 447 ~l~~~-~l~~~~~~~~~~l~~L~~L~Ls~-~~~~~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~ 522 (800)
+++++ .++.+|. +..+.+|++|+|++ | .+..+| ..|++|.+|++|+|++|.|+.+|. .+.+|++|++|+|++|
T Consensus 14 ~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 14 RCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp ECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 44444 4444443 44444444555543 3 333333 334444555555555554444332 3444555555555443
Q ss_pred ccccccchhhhCCCCCCcEEEeeecCCC
Q 041843 523 DELVEVPQQLLSNFSRLRVLRMFATGVG 550 (800)
Q Consensus 523 ~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 550 (800)
. +..+|...+..+. |+.|++.+|.+.
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred c-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 2 3444444333333 555555555443
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.80 E-value=3.3e-08 Score=102.79 Aligned_cols=178 Identities=14% Similarity=0.112 Sum_probs=110.6
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
.+++|++..++.+.+++..+ ..+.+.|+|++|+|||++|+.+++... ....-..++.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------------ 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------------ 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT-CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT------------
T ss_pred HHHhCCHHHHHHHHHHHhCC-CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh------------
Confidence 46899999999999988776 444499999999999999999998851 1110011222333221110
Q ss_pred CCCCCCCCCCHHHHHHHHHHH--h-cCCceEEEEccccch--hh---hhhcCCcCCCCcEEEEEeCCcccc-cc-cCccc
Q 041843 142 LYTDSWKSKSLEEKAQDIFKT--L-SKKKFALLLDDLWER--VD---LKKIGVPLPKNSAVVFTTRFVDVC-GG-MEARR 211 (800)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlvlDdv~~~--~~---~~~~~~~~~~~s~iivTtR~~~~~-~~-~~~~~ 211 (800)
....+....+... + .+++.++|+|+++.. .. +..+....+.+.++|+||....-. .. .....
T Consensus 83 --------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 83 --------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp --------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred --------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 0111111111111 1 256889999999643 22 333333334577888888754321 11 12235
Q ss_pred eEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHH
Q 041843 212 KFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIG 264 (800)
Q Consensus 212 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 264 (800)
.+.+.+++.++..+++...+.......+ .+....+++.++|.+..+....
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 7999999999999999888754432223 6778899999999997655443
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.75 E-value=2.5e-08 Score=105.05 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=86.0
Q ss_pred EEEcccc-ccCCCCCCCCCCcceEEEeec-CCCcccccccccCCCCCcEEEccCccccccc-cccccccccccEEeccCC
Q 041843 423 RLSLMKN-SIGNLPTVPTCPHLLTLFLND-NPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQLLDISYT 499 (800)
Q Consensus 423 ~l~l~~~-~~~~l~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~ 499 (800)
.++.+++ .+..+|.+..+.+|+.|+|++ |.+..+++..|..+++|++|+|++| .+..+ |..|.+|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 4677777 888899888889999999996 9999999888999999999999999 55554 557899999999999999
Q ss_pred CCcccchhhhcCccCceeccccccc
Q 041843 500 SVTGLPEGLKALVNLKCLNLDWADE 524 (800)
Q Consensus 500 ~i~~lp~~i~~l~~L~~L~l~~~~~ 524 (800)
.|+.+|..+....+|+.|++.+|..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCc
Confidence 9999987765555599999997753
No 164
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.66 E-value=3.4e-08 Score=98.05 Aligned_cols=170 Identities=8% Similarity=0.050 Sum_probs=103.0
Q ss_pred Ccccch---hHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 041843 62 PTVVGL---QSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 138 (800)
Q Consensus 62 ~~~vgr---~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 138 (800)
.+|+|+ +..++.+..+.... ..+.+.|+|++|+||||+|+++++... .....+.|+++...... +..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~------~~~ 97 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD-GVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI------STA 97 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC-SCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS------CGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH------HHH
Confidence 457763 35666666666554 568899999999999999999998872 22345666665432110 000
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchhh----hhhcCCc----CCCCc-EEEEEeCCccc-cccc-
Q 041843 139 KIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERVD----LKKIGVP----LPKNS-AVVFTTRFVDV-CGGM- 207 (800)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----~~~~~~~----~~~~s-~iivTtR~~~~-~~~~- 207 (800)
. .+.+ .++.+||+||++.... .+.+... ...+. ++|+||+.... ....
T Consensus 98 ~--------------------~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 98 L--------------------LEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp G--------------------GTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred H--------------------HHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 0 0011 3467999999864311 1222111 11133 47777764321 1111
Q ss_pred -------CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHHH
Q 041843 208 -------EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIGR 265 (800)
Q Consensus 208 -------~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 265 (800)
.....+.+++++.++..+++...+.......+ .+....+++.++|.+..+..+..
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHHH
Confidence 11267899999999999999887753332222 67788999999998876655443
No 165
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=2.9e-07 Score=101.87 Aligned_cols=189 Identities=10% Similarity=0.093 Sum_probs=108.5
Q ss_pred CcccchhHHHHHHHHHhccC----------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC
Q 041843 62 PTVVGLQSQLEQVWRCLVQE----------------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 125 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~----------------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 125 (800)
.+++|+++.++++.+++... +..+.+.|+|++|+||||+|+++++.. . ..++.++++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~-~~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----G-YDILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----T-CEEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----C-CCEEEEeCCC
Confidence 56899999999999998651 134799999999999999999999886 1 2344555555
Q ss_pred ccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchhh-----hhhcCCcCC-CCcEEEEEeC
Q 041843 126 DLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERVD-----LKKIGVPLP-KNSAVVFTTR 199 (800)
Q Consensus 126 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-----~~~~~~~~~-~~s~iivTtR 199 (800)
......+...+........ ...-...... .....+++.+||+|+++.... +..+...+. .+..||+++.
T Consensus 113 ~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~ 187 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMS---VVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICN 187 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCC---STTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEES
T ss_pred cchHHHHHHHHHHHhcccc---HHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEc
Confidence 4443322222221111000 0000000000 001235779999999964311 122211111 1344555554
Q ss_pred Ccc---cccccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh-hHHHHHH
Q 041843 200 FVD---VCGGMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP-LALIIIG 264 (800)
Q Consensus 200 ~~~---~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~ 264 (800)
+.. +.........+.+++++.++..+++...+.......+ ++....|++.++|.+ .++..+.
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 322 1111223457899999999999999887754433333 456788999999955 4455443
No 166
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.63 E-value=6.6e-07 Score=91.13 Aligned_cols=174 Identities=18% Similarity=0.187 Sum_probs=103.8
Q ss_pred CcccchhHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 129 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 129 (800)
.+++|.++.++++.+.+.. -...+.+.|+|++|+|||++|+++++.. ... .+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHHH-
Confidence 5689999999999888743 1245779999999999999999999886 222 22232221100
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHhcCCceEEEEccccch----------------hhhhhcCC-----c
Q 041843 130 EKIQETIGKKIGLYTDSWKSKSLEEKAQDIF-KTLSKKKFALLLDDLWER----------------VDLKKIGV-----P 187 (800)
Q Consensus 130 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~----------------~~~~~~~~-----~ 187 (800)
. ...........+. ......+.+|+||+++.. ..+..+.. .
T Consensus 90 ----------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 90 ----------------K-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp ----------------C-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred ----------------h-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 0 0111122222222 233456789999999542 11111111 1
Q ss_pred CCCCcEEEEEeCCccccc-----ccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCC-ChhHHH
Q 041843 188 LPKNSAVVFTTRFVDVCG-----GMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGG-LPLALI 261 (800)
Q Consensus 188 ~~~~s~iivTtR~~~~~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~ 261 (800)
...+..||.||....... .......+.++..+.++..+++..++.......+. ....+++.+.| .|-.|.
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV----NLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHHCTTCCHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC----CHHHHHHHcCCCCHHHHH
Confidence 123567788887554432 11223478999999999999999887654433222 24667777777 454444
Q ss_pred HH
Q 041843 262 II 263 (800)
Q Consensus 262 ~~ 263 (800)
.+
T Consensus 229 ~l 230 (285)
T 3h4m_A 229 AI 230 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 167
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.62 E-value=7.2e-09 Score=109.54 Aligned_cols=157 Identities=19% Similarity=0.176 Sum_probs=76.9
Q ss_pred ccceEEEccccccCCCC-----C-C-CCCCcceEEEeecCCCccccc-ccccCCCCCcEEEccCcccccc-ccccc----
Q 041843 419 EMGRRLSLMKNSIGNLP-----T-V-PTCPHLLTLFLNDNPLRTITG-GFFQSMPCLTVLKMSDNIMLRQ-LPTGI---- 485 (800)
Q Consensus 419 ~~l~~l~l~~~~~~~l~-----~-~-~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~Ls~~~~~~~-lp~~i---- 485 (800)
+.++.|++++|.+.... . + ..+++|+.|++++|.+..... .+...+++|++|+|++| .+.. -...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 35666777766654321 1 1 223566666666666543221 12233456666666666 3322 11222
Q ss_pred -cccccccEEeccCCCCcc-----cchhhhcCccCceeccccccccccc-----chhhhCCCCCCcEEEeeecCCCCCCc
Q 041843 486 -SKLVSLQLLDISYTSVTG-----LPEGLKALVNLKCLNLDWADELVEV-----PQQLLSNFSRLRVLRMFATGVGSYGR 554 (800)
Q Consensus 486 -~~L~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~~l-----p~~~~~~L~~L~~L~l~~~~~~~~~~ 554 (800)
...++|++|+|++|.|+. ++..+..+++|++|++++|. +... +.. +...++|++|++++|.+....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g- 227 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTA- 227 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHH-
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHH-
Confidence 134556666666666544 34444556666666666554 2221 121 445556666666666554210
Q ss_pred ccccccchHHHhhCCCCCcEEEEEeccch
Q 041843 555 FSSRYVNVAEELLGLKYLEVLEITFRSFE 583 (800)
Q Consensus 555 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 583 (800)
.......+...++|+.|++++|.+.
T Consensus 228 ----~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ----ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp ----HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred ----HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 0012333444555555555555543
No 168
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=2.3e-07 Score=97.90 Aligned_cols=190 Identities=14% Similarity=0.148 Sum_probs=109.9
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccC-CCCCCEEEEEEEcCccCHHHHHHHHHHHh
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN-PTDFDYVIWVVVSKDLQLEKIQETIGKKI 140 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 140 (800)
..++|+++.++.+..++..+ ..+.+.|+|++|+||||+|+.+++..... ...+ .+..++.+.......+...+....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA-NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVREKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT-TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHTTHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcC-CCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHHHHHHHHh
Confidence 56899999999999998876 33448999999999999999998875100 0111 233333333233333222221111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hh---hhhcCCcCCCCcEEEEEeCCccc-cccc-CccceE
Q 041843 141 GLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VD---LKKIGVPLPKNSAVVFTTRFVDV-CGGM-EARRKF 213 (800)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~---~~~~~~~~~~~s~iivTtR~~~~-~~~~-~~~~~~ 213 (800)
...... .... .....-.+++-++++|+++.. .. +..+....+...++|++|....- ...+ .....+
T Consensus 115 ~~~~~~-~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 115 RLTVSK-PSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HSCCCC-CCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred hhcccc-cchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 100000 0000 000011235579999998643 11 22222223346677777754332 1111 122478
Q ss_pred EeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHH
Q 041843 214 KVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIII 263 (800)
Q Consensus 214 ~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 263 (800)
.+.+++.++..+.+...+.......+ ++..+.|++.++|.|..+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999887754332223 678899999999999765443
No 169
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.58 E-value=4.2e-08 Score=93.58 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=41.1
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++||+++++++.+.+... ..+.+.|+|++|+|||++|+++++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR-TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC-CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999998775 55778999999999999999999886
No 170
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.57 E-value=2.7e-07 Score=99.55 Aligned_cols=179 Identities=17% Similarity=0.101 Sum_probs=105.3
Q ss_pred ccc-chhH--HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHH
Q 041843 63 TVV-GLQS--QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKK 139 (800)
Q Consensus 63 ~~v-gr~~--~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 139 (800)
.|+ |... ....+.......+....+.|+|++|+||||||+++++..... .....++++++. .+..++...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~------~~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSE------KFLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHH------HHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHH------HHHHHHHHH
Confidence 466 6433 333444444443226789999999999999999999876211 112234555543 233444443
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh----hhhhcCCc----CCCCcEEEEEeCCccc-c------
Q 041843 140 IGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV----DLKKIGVP----LPKNSAVVFTTRFVDV-C------ 204 (800)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----~~~~~~~~----~~~~s~iivTtR~~~~-~------ 204 (800)
+... . ...+...+..++-+|++||++... ..+.+... ...|..||+||..... .
T Consensus 179 ~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 179 MKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 3211 1 122334444467899999995432 12222111 2347788888875321 1
Q ss_pred --cccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHH
Q 041843 205 --GGMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALII 262 (800)
Q Consensus 205 --~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 262 (800)
..+.....+.+++++.++..+++.+.+.......+ ++....|++.++|.+..+.-
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 11222357889999999999999888754332233 45677889999998865543
No 171
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.56 E-value=8.1e-09 Score=109.15 Aligned_cols=130 Identities=19% Similarity=0.214 Sum_probs=77.1
Q ss_pred ccceEEEccccccCCC--CCC-CCCCcceEEEeecCCCcccccccc-----cCCCCCcEEEccCcccccc-----ccccc
Q 041843 419 EMGRRLSLMKNSIGNL--PTV-PTCPHLLTLFLNDNPLRTITGGFF-----QSMPCLTVLKMSDNIMLRQ-----LPTGI 485 (800)
Q Consensus 419 ~~l~~l~l~~~~~~~l--~~~-~~~~~L~~L~l~~~~l~~~~~~~~-----~~l~~L~~L~Ls~~~~~~~-----lp~~i 485 (800)
.+++.|++++|.+... ..+ ..+++|+.|++++|.+.......+ ...++|++|+|++| .+.. ++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHH
Confidence 4677777777766331 111 234567777777777654433222 24566777777777 3332 44445
Q ss_pred cccccccEEeccCCCCcc-----cchhhhcCccCceecccccccccc-----cchhhhCCCCCCcEEEeeecCCCC
Q 041843 486 SKLVSLQLLDISYTSVTG-----LPEGLKALVNLKCLNLDWADELVE-----VPQQLLSNFSRLRVLRMFATGVGS 551 (800)
Q Consensus 486 ~~L~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~~-----lp~~~~~~L~~L~~L~l~~~~~~~ 551 (800)
..+++|++|+|++|.|.. ++..+...++|++|++++|.. +. ++.. +...++|++|++++|.+..
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i-~~~g~~~l~~~-L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-GDTAALALARA-AREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC-CHHHHHHHHHH-HHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC-CHHHHHHHHHH-HHhCCCCCEEeccCCCCCH
Confidence 667777777777777664 345566667777777776643 32 1221 3455677777777776654
No 172
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.55 E-value=2.1e-06 Score=92.46 Aligned_cols=172 Identities=16% Similarity=0.130 Sum_probs=104.6
Q ss_pred CCcccchhHHH---HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc-cCHHHHHHHH
Q 041843 61 EPTVVGLQSQL---EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETI 136 (800)
Q Consensus 61 ~~~~vgr~~~~---~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 136 (800)
-..++|.+..+ ..+...+..+ ..+.+.|+|++|+||||+|+.+++.. ... ++.++.. .....+. .+
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~-~~~~vLL~GppGtGKTtlAr~ia~~~---~~~-----f~~l~a~~~~~~~ir-~~ 94 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAG-HLHSMILWGPPGTGKTTLAEVIARYA---NAD-----VERISAVTSGVKEIR-EA 94 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHT-CCCEEEEECSTTSSHHHHHHHHHHHT---TCE-----EEEEETTTCCHHHHH-HH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcC-CCcEEEEECCCCCcHHHHHHHHHHHh---CCC-----eEEEEeccCCHHHHH-HH
Confidence 35689999988 7777777776 56789999999999999999999886 222 2233221 1222211 11
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHH-HHhcCCceEEEEccccch--hhhhhcCCcCCCC-cEEEE-EeCCccc--c-cccC
Q 041843 137 GKKIGLYTDSWKSKSLEEKAQDIF-KTLSKKKFALLLDDLWER--VDLKKIGVPLPKN-SAVVF-TTRFVDV--C-GGME 208 (800)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~--~~~~~~~~~~~~~-s~iiv-TtR~~~~--~-~~~~ 208 (800)
. .... ....+++.+|++|++... ...+.+...+..+ ..+|. ||.+... . ....
T Consensus 95 ~-------------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 95 I-------------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp H-------------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHT
T ss_pred H-------------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhC
Confidence 1 1111 112467899999999643 2233332222233 33443 4444321 1 1112
Q ss_pred ccceEEeccCChHHHHHHHHHHhCc-------ccccCCCChHHHHHHHHHHhCCChhHHHHHH
Q 041843 209 ARRKFKVACLSDEDAWELFREKVGE-------ETIESHHSIPQLAQTVAKECGGLPLALIIIG 264 (800)
Q Consensus 209 ~~~~~~l~~L~~~e~~~l~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 264 (800)
...++.+++++.++..+++.+.+.. .....+ ++..+.+++.++|.+..+.-+.
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~---~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLP---DETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECC---HHHHHHHHHHHCSCHHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 3457899999999999999887643 111122 6788899999999986554443
No 173
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.54 E-value=7.3e-07 Score=93.37 Aligned_cols=169 Identities=13% Similarity=0.111 Sum_probs=103.2
Q ss_pred CCcccchhHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 136 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 136 (800)
-..++|++..++++..++.. ......|.|+|++|+|||++|+++++.. ... .+.+++........+.
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~---~~~~~~~~~~~~~~~~--- 98 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SAN---IKTTAAPMIEKSGDLA--- 98 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCC---EEEEEGGGCCSHHHHH---
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEecchhccchhHHH---
Confidence 35799999999999888764 2345678999999999999999998886 222 2223332211111111
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hhh-------hhcCC---------------cCCCCc
Q 041843 137 GKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VDL-------KKIGV---------------PLPKNS 192 (800)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~-------~~~~~---------------~~~~~s 192 (800)
..+.. ..+..+|+||+++.. ... +.... ..+ +.
T Consensus 99 --------------------~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~ 155 (338)
T 3pfi_A 99 --------------------AILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KF 155 (338)
T ss_dssp --------------------HHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC-CC
T ss_pred --------------------HHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC-Ce
Confidence 11111 235678889998643 111 11100 001 24
Q ss_pred EEEEEeCCccccc-c-c-CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHH
Q 041843 193 AVVFTTRFVDVCG-G-M-EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIG 264 (800)
Q Consensus 193 ~iivTtR~~~~~~-~-~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 264 (800)
.+|.+|....... . . .....+.+++++.++..+++...+.......+ .+....+++.+.|.|-.+..+.
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCE---EKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEEC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHCcCHHHHHHHH
Confidence 6666666433211 0 1 12357999999999999999887754332222 6778889999999996555443
No 174
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.48 E-value=2e-06 Score=89.33 Aligned_cols=173 Identities=14% Similarity=0.100 Sum_probs=103.7
Q ss_pred CCcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHh
Q 041843 61 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKI 140 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 140 (800)
-.+++|.++.++.+.+++..+....++.++|++|+|||++|+++++.. . ..++.++.+.. ....+...+....
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~i~~~~~~~~ 97 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDFVRGPLTNFA 97 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHHHHTHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHHHHHHHHHHH
Confidence 357899999999999999876456788888999999999999999886 1 22344443321 2222211111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh---hhhhcC---CcCCCCcEEEEEeCCccccc-cc-Cccce
Q 041843 141 GLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV---DLKKIG---VPLPKNSAVVFTTRFVDVCG-GM-EARRK 212 (800)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---~~~~~~---~~~~~~s~iivTtR~~~~~~-~~-~~~~~ 212 (800)
... ...+++.++|+||++... ....+. ...+.+.++|+||....-.. .+ .....
T Consensus 98 ~~~------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 98 SAA------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HBC------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred hhc------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 000 012467899999997543 222221 22233678888887543211 11 12347
Q ss_pred EEeccCChHHHHHHH-------HHHhCcccccCCCChH-HHHHHHHHHhCCChhHHH
Q 041843 213 FKVACLSDEDAWELF-------REKVGEETIESHHSIP-QLAQTVAKECGGLPLALI 261 (800)
Q Consensus 213 ~~l~~L~~~e~~~l~-------~~~~~~~~~~~~~~~~-~~~~~i~~~~~g~Plai~ 261 (800)
+.+++++.++-.+++ ...+.......+ + +....+++.++|.+..+.
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~---~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA---DMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS---CHHHHHHHHHHTCSCTTHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC---cHHHHHHHHHhCCCCHHHHH
Confidence 899999988854433 222222222222 3 778889999998876443
No 175
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.43 E-value=1.4e-06 Score=92.32 Aligned_cols=195 Identities=12% Similarity=0.051 Sum_probs=102.2
Q ss_pred CcccchhHHHHHH---HHHhccCC-CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEc----CccCHHHHH
Q 041843 62 PTVVGLQSQLEQV---WRCLVQEP-AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS----KDLQLEKIQ 133 (800)
Q Consensus 62 ~~~vgr~~~~~~l---~~~l~~~~-~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~----~~~~~~~~~ 133 (800)
..|+|++...+.+ .+.+..+. ..+.+.|+|++|+|||++|+++++.. ..... .+.+... ......+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~-~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL---GPDTP-FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH---CSSCC-EEEEEGGGGSCSSSCHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh---cccCC-cccccchhhhhcccchhHHH
Confidence 5799999887764 44444432 23689999999999999999999987 22111 1222211 122333333
Q ss_pred HHHHHHhCC-C--------------------CC-------CCCCCCHHHHHHHHHHHh-----cCC----ceEEEEcccc
Q 041843 134 ETIGKKIGL-Y--------------------TD-------SWKSKSLEEKAQDIFKTL-----SKK----KFALLLDDLW 176 (800)
Q Consensus 134 ~~i~~~l~~-~--------------------~~-------~~~~~~~~~~~~~l~~~l-----~~~----~~LlvlDdv~ 176 (800)
......... . .. .............+.... .++ +.+|++|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 333322100 0 00 000000111222221111 233 4599999996
Q ss_pred ch--hhhh---hcCCcCCCCcEEEEEeC-Cccc--------cc-----ccCccceEEeccCChHHHHHHHHHHhCccccc
Q 041843 177 ER--VDLK---KIGVPLPKNSAVVFTTR-FVDV--------CG-----GMEARRKFKVACLSDEDAWELFREKVGEETIE 237 (800)
Q Consensus 177 ~~--~~~~---~~~~~~~~~s~iivTtR-~~~~--------~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 237 (800)
.. .... ....... ...++++|. ...+ .. .......+.+++++.++..+++..++......
T Consensus 200 ~l~~~~~~~L~~~le~~~-~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDM-APVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp GSBHHHHHHHHHHTTCTT-CCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred ccChHHHHHHHHHhhCcC-CCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 53 2222 2222211 223444443 1110 00 01123458999999999999999887543322
Q ss_pred CCCChHHHHHHHHHHhC-CChhHHHHHH
Q 041843 238 SHHSIPQLAQTVAKECG-GLPLALIIIG 264 (800)
Q Consensus 238 ~~~~~~~~~~~i~~~~~-g~Plai~~~~ 264 (800)
.+ .+....+++.+. |.|..+..+.
T Consensus 279 ~~---~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 279 MS---EDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp BC---HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CC---HHHHHHHHHHhcCCCHHHHHHHH
Confidence 22 677888999997 8876554433
No 176
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.43 E-value=2e-05 Score=81.27 Aligned_cols=178 Identities=15% Similarity=0.178 Sum_probs=105.3
Q ss_pred CcccchhHHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-----------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
.+++|.++..+++.+.+.. ....+.|.|+|++|+|||++|+++++.. .. ...+.+..+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~--~~~~~i~~~~l~--- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NN--STFFSISSSDLV--- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT---TS--CEEEEEECCSSC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc---CC--CcEEEEEhHHHH---
Confidence 5689999988888876521 1234789999999999999999999886 11 122333332211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCceEEEEccccchh-------------hhhhc----CCc--CCC
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT-LSKKKFALLLDDLWERV-------------DLKKI----GVP--LPK 190 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~-------------~~~~~----~~~--~~~ 190 (800)
....... +.....+.+. -..++.+|++|+++... ....+ ... -..
T Consensus 84 --------------~~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 84 --------------SKWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp --------------CSSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred --------------hhhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 0011122 2233333333 24578899999996431 01111 111 122
Q ss_pred CcEEEEEeCCcccccc-c--CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCC-hhHHHHHHH
Q 041843 191 NSAVVFTTRFVDVCGG-M--EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGL-PLALIIIGR 265 (800)
Q Consensus 191 ~s~iivTtR~~~~~~~-~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~ 265 (800)
+..||.||..+..... + .....+.++..+.++-.++++.++.......+ ......|++.+.|. +-.|..+..
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT---EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC---HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4556667764432211 0 22357889999999999999888755432212 56778899999887 444555543
No 177
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.42 E-value=5.2e-06 Score=87.10 Aligned_cols=177 Identities=11% Similarity=0.061 Sum_probs=105.3
Q ss_pred CcccchhHHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-----------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
.+++|.+..++++.+.+.. ....+.|.|+|++|+|||++|+++++.. .. ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhc--
Confidence 4689999999999887642 1245789999999999999999999876 21 233444432111
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEccccch-------------hhhhhcCC-------cCC
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-SKKKFALLLDDLWER-------------VDLKKIGV-------PLP 189 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~-------------~~~~~~~~-------~~~ 189 (800)
. ...........+.... ..++.+|+||+++.. ..+..+.. ...
T Consensus 156 ---------------~-~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 ---------------K-WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ---------------S-STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ---------------c-ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 0011122222233322 356789999998532 00111111 112
Q ss_pred CCcEEEEEeCCcccccc-c--CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCC-ChhHHHHHHH
Q 041843 190 KNSAVVFTTRFVDVCGG-M--EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGG-LPLALIIIGR 265 (800)
Q Consensus 190 ~~s~iivTtR~~~~~~~-~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 265 (800)
.+..||.||........ + .....+.+...+.++..+++...+........ .+....+++.+.| .+-.|..+..
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 24566667765432211 0 12346788999999999999887744332222 5678889999988 4555655543
No 178
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=1.1e-06 Score=92.81 Aligned_cols=192 Identities=11% Similarity=0.096 Sum_probs=104.1
Q ss_pred CcccchhHHHHHHHHHh-ccCCCceEEEEEcCCCCcHHHHHHHHHhhcccC-CC--CCCE--------------------
Q 041843 62 PTVVGLQSQLEQVWRCL-VQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN-PT--DFDY-------------------- 117 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l-~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~--~f~~-------------------- 117 (800)
.+++|.+..++.+.+++ ..+ ..+.+.|+|+.|+||||+|+.++...... .+ .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY 92 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSS
T ss_pred HHhcCCHHHHHHHHHHHhhCC-CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccc
Confidence 56899999999999988 554 33349999999999999999998854111 11 0000
Q ss_pred EEEEEEcCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--h---hhhhcCCcCCCC
Q 041843 118 VIWVVVSKDL-QLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--V---DLKKIGVPLPKN 191 (800)
Q Consensus 118 ~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~---~~~~~~~~~~~~ 191 (800)
.+.+..+... ......++++..+.... ...... .+ ..+.+++-++|+|++... . .+..+....+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 93 HLEITPSDMGNNDRIVIQELLKEVAQME------QVDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp EEEECCC----CCHHHHHHHHHHHTTTT------C--------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred eEEecHhhcCCcchHHHHHHHHHHHHhc------cccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 1111111000 00001112222211000 000000 00 002346779999998653 1 122222223457
Q ss_pred cEEEEEeCCccc-cccc-CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHHH
Q 041843 192 SAVVFTTRFVDV-CGGM-EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIIIG 264 (800)
Q Consensus 192 s~iivTtR~~~~-~~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 264 (800)
..+|++|.+... ...+ .....+.+.+++.++..+.+...+.......+. ++....|++.++|.+..+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHH
Confidence 778887765332 1111 233678999999999999998877543322110 3567889999999986554443
No 179
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.41 E-value=1.1e-05 Score=80.74 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=99.2
Q ss_pred CcccchhHHHHHHHHHhc---cC--------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 62 PTVVGLQSQLEQVWRCLV---QE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~---~~--------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
.+++|.++..+++.+.+. .. ...+.+.|+|++|+|||++|+++++.. ... .+.+.++.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh--
Confidence 468999988888866542 11 234678999999999999999999986 222 23333332110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh-----------------hhhhcCCc-----C
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV-----------------DLKKIGVP-----L 188 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----------------~~~~~~~~-----~ 188 (800)
.............+.......+.+|++|+++... .+..+... -
T Consensus 78 ---------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 ---------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ---------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ---------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 0011111111222223334567999999996430 11112111 1
Q ss_pred CCCcEEEEEeCCcccccc--c---CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChh-HHHH
Q 041843 189 PKNSAVVFTTRFVDVCGG--M---EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPL-ALII 262 (800)
Q Consensus 189 ~~~s~iivTtR~~~~~~~--~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~ 262 (800)
..+..||.||........ . .....+.++..+.++-.+++...+....... ........+++.+.|.+- .|..
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~--~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ--SSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB--THHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc--chhhHHHHHHHHCCCCCHHHHHH
Confidence 225567777765442211 1 1235788999999999999988775433221 122345778888888753 4443
Q ss_pred H
Q 041843 263 I 263 (800)
Q Consensus 263 ~ 263 (800)
+
T Consensus 221 l 221 (262)
T 2qz4_A 221 I 221 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 180
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.39 E-value=6.9e-06 Score=85.34 Aligned_cols=167 Identities=13% Similarity=0.105 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCC-------------------CCCEEEEEEEcCcc
Q 041843 67 LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-------------------DFDYVIWVVVSKDL 127 (800)
Q Consensus 67 r~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------~f~~~~wv~~~~~~ 127 (800)
.++..+.+...+..+.-.+.+.++|+.|+|||++|+.+++....... +++ ..++....
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~-- 83 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK-- 83 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT--
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc--
Confidence 35567778888777644578999999999999999999987621110 122 22222210
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCceEEEEccccch--hhhh---hcCCcCCCCcEEEEE
Q 041843 128 QLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLK---KIGVPLPKNSAVVFT 197 (800)
Q Consensus 128 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~---~~~~~~~~~s~iivT 197 (800)
.......++. +.+.+.+ .+++-++|+|+++.. .... ......+.+..+|++
T Consensus 84 ------------------~~~~~~i~~i-r~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~ 144 (334)
T 1a5t_A 84 ------------------GKNTLGVDAV-REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLA 144 (334)
T ss_dssp ------------------TCSSBCHHHH-HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEE
T ss_pred ------------------cCCCCCHHHH-HHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 0011122221 2222332 256789999999753 2222 222223346777777
Q ss_pred eCCcc-cccc-cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHH
Q 041843 198 TRFVD-VCGG-MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIII 263 (800)
Q Consensus 198 tR~~~-~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 263 (800)
|.+.. +... ......+.+.+++.++..+.+.+.. . .+ ++.+..+++.++|.|..+..+
T Consensus 145 t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~--~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---T--MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---C--CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred eCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---C--CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 76543 2211 1234579999999999999998875 1 11 566788999999999766543
No 181
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.39 E-value=9.1e-06 Score=81.90 Aligned_cols=161 Identities=14% Similarity=0.071 Sum_probs=91.5
Q ss_pred CcccchhHHHHHHHHH-------hcc--CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHH
Q 041843 62 PTVVGLQSQLEQVWRC-------LVQ--EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 132 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~-------l~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 132 (800)
..++|.+..++++... +.. ....+.+.|+|++|+|||++|+++++.. ... .+.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~---~~~i~~~~~------ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFP---FIKICSPDK------ 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCS---EEEEECGGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEeCHHH------
Confidence 4578888777766663 321 2356789999999999999999999986 222 122222210
Q ss_pred HHHHHHHhCCCCCCCCCCCHHH---HH-HHHHHHhcCCceEEEEccccch---------------hhhhhcCCcC---CC
Q 041843 133 QETIGKKIGLYTDSWKSKSLEE---KA-QDIFKTLSKKKFALLLDDLWER---------------VDLKKIGVPL---PK 190 (800)
Q Consensus 133 ~~~i~~~l~~~~~~~~~~~~~~---~~-~~l~~~l~~~~~LlvlDdv~~~---------------~~~~~~~~~~---~~ 190 (800)
+ ....... .. ..+......++.+|++|+++.. ..+..+.... +.
T Consensus 101 -------~-------~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~ 166 (272)
T 1d2n_A 101 -------M-------IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGR 166 (272)
T ss_dssp -------C-------TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTC
T ss_pred -------h-------cCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCC
Confidence 0 0011111 11 2222233456889999998642 1122222211 12
Q ss_pred CcEEEEEeCCcccccc---cC-ccceEEeccCCh-HHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCC
Q 041843 191 NSAVVFTTRFVDVCGG---ME-ARRKFKVACLSD-EDAWELFREKVGEETIESHHSIPQLAQTVAKECGGL 256 (800)
Q Consensus 191 ~s~iivTtR~~~~~~~---~~-~~~~~~l~~L~~-~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 256 (800)
...||.||........ .. ....+.+++++. ++..+++.+.. . .+ .+....+++.+.|.
T Consensus 167 ~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~----~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 167 KLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-N----FK---DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-C----SC---HHHHHHHHHHHTTS
T ss_pred CEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-C----CC---HHHHHHHHHHhcCC
Confidence 3456777776543221 11 145688999988 66666665532 1 11 56688899999883
No 182
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.39 E-value=2.2e-06 Score=88.93 Aligned_cols=173 Identities=16% Similarity=0.143 Sum_probs=98.9
Q ss_pred Cccc-ch--hHHHHHHHHHhccCC-CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 041843 62 PTVV-GL--QSQLEQVWRCLVQEP-AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 62 ~~~v-gr--~~~~~~l~~~l~~~~-~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
.+|+ |. ......+...+...+ ....+.|+|++|+||||||+.+++..... ...++++++. .+...+.
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~------~~~~~~~ 81 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSAD------DFAQAMV 81 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHH------HHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHH------HHHHHHH
Confidence 3455 53 233444555444432 35689999999999999999999887221 2234555532 2333333
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh----hhhhcCCc----CCCCcEEEEEeCCccc-c----
Q 041843 138 KKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV----DLKKIGVP----LPKNSAVVFTTRFVDV-C---- 204 (800)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----~~~~~~~~----~~~~s~iivTtR~~~~-~---- 204 (800)
..+.. ... ..+.... .++.+|++||+.... ..+.+... ...+..||+||..... .
T Consensus 82 ~~~~~-------~~~----~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 82 EHLKK-------GTI----NEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHH-------TCH----HHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHc-------CcH----HHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 33211 011 1222222 236799999986432 11222111 2236678888764321 1
Q ss_pred ----cccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHH
Q 041843 205 ----GGMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLAL 260 (800)
Q Consensus 205 ----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 260 (800)
..+.....+.+++ +.++..+++...+.......+ ++....+++.+ |..-.+
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHHH
Confidence 1112225689999 999999999888754332222 67788899999 877543
No 183
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=3.8e-06 Score=87.82 Aligned_cols=170 Identities=15% Similarity=0.201 Sum_probs=102.9
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-EEEEEEEcCccCHHHHHHHHHHHh
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-YVIWVVVSKDLQLEKIQETIGKKI 140 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 140 (800)
..++|.+..++.+...+..+ +.+.+.++|+.|+||||+|+.++..... ..+. .+..++.+......
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g-~~~~~ll~Gp~G~GKTtla~~la~~l~~--~~~~~~~~~~~~~~~~~~~---------- 91 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG-KLPHLLFYGPPGTGKTSTIVALAREIYG--KNYSNMVLELNASDDRGID---------- 91 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-CCCCEEEECSSSSSHHHHHHHHHHHHHT--TSHHHHEEEECTTSCCSHH----------
T ss_pred HHhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHcC--CCccceEEEEcCcccccHH----------
Confidence 45789999999998888876 4444999999999999999999988621 1111 12222222211221
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHh------cCCceEEEEccccch--hh---hhhcCCcCCCCcEEEEEeCCccc-ccc-c
Q 041843 141 GLYTDSWKSKSLEEKAQDIFKTL------SKKKFALLLDDLWER--VD---LKKIGVPLPKNSAVVFTTRFVDV-CGG-M 207 (800)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~l------~~~~~LlvlDdv~~~--~~---~~~~~~~~~~~s~iivTtR~~~~-~~~-~ 207 (800)
...+.+.... .+.+-++|+|+++.. .. +..+....+....+|++|....- ... .
T Consensus 92 -------------~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 92 -------------VVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL 158 (340)
T ss_dssp -------------HHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -------------HHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH
Confidence 1111111111 234678999998642 22 22222223446677777764321 111 1
Q ss_pred CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHH
Q 041843 208 EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLAL 260 (800)
Q Consensus 208 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 260 (800)
.....+.+.+++.++..+.+...+.......+ ++..+.+++.++|.+.-+
T Consensus 159 sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 159 SQCTRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHH
T ss_pred hhceeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 12347889999999999988877643322222 567888999999988643
No 184
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.36 E-value=1.4e-05 Score=81.84 Aligned_cols=176 Identities=12% Similarity=0.100 Sum_probs=103.8
Q ss_pred CcccchhHHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-----------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
.+++|.+..++.+.+.+.. ....+.+.|+|++|+|||++|++++... .. ..+.++++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhh--
Confidence 5689999999999887632 1135789999999999999999999886 22 223333322110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCceEEEEccccchhh-----------------hhhcCCc----C
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT-LSKKKFALLLDDLWERVD-----------------LKKIGVP----L 188 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~-----------------~~~~~~~----~ 188 (800)
. ...........+... ....+.+|++|+++.... +..+... .
T Consensus 93 ---------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ---------------K-YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ---------------S-SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ---------------c-ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 111223333333332 345678999999954310 1111000 1
Q ss_pred CCCcEEEEEeCCcccccc-c--CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChh-HHHHHH
Q 041843 189 PKNSAVVFTTRFVDVCGG-M--EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPL-ALIIIG 264 (800)
Q Consensus 189 ~~~s~iivTtR~~~~~~~-~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 264 (800)
+.+..||.||........ + .....+.++..+.++..+++...+.......+ .+....+++.+.|.+- ++..+.
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD---TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 124566777775432211 0 12346778888888888888877654332112 5677889999999875 554443
No 185
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.34 E-value=1.3e-05 Score=82.85 Aligned_cols=176 Identities=16% Similarity=0.158 Sum_probs=105.5
Q ss_pred CcccchhHHHHHHHHHhc----------c-CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 62 PTVVGLQSQLEQVWRCLV----------Q-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~----------~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
.+++|.++.++++.+.+. . ....+.|.|+|++|+|||++|+++++.. ... .+.++++
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchH------
Confidence 468999999999988872 1 1234679999999999999999999986 222 2223321
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEccccchhh-----------------hhhcCC--cCCC
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-SKKKFALLLDDLWERVD-----------------LKKIGV--PLPK 190 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~~-----------------~~~~~~--~~~~ 190 (800)
+ +... .....+.....+.+.. ..++.+|+||+++.... +..+.. ....
T Consensus 86 ~----l~~~--------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 D----LVSK--------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp H----HHTT--------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred H----Hhhc--------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 1 1110 0111223333333332 35678999999964310 111111 1123
Q ss_pred CcEEEEEeCCcccccc-c--CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCC-hhHHHHHH
Q 041843 191 NSAVVFTTRFVDVCGG-M--EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGL-PLALIIIG 264 (800)
Q Consensus 191 ~s~iivTtR~~~~~~~-~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 264 (800)
+..||.||..+..... + .....+.++..+.++-.++++.++........ ......+++.+.|. +-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566667775443221 0 12356788999999999999988865432212 56678899998874 54555444
No 186
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.33 E-value=1.2e-05 Score=84.27 Aligned_cols=176 Identities=16% Similarity=0.166 Sum_probs=104.0
Q ss_pred CcccchhHHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-----------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
.+++|.+..+++|.+.+.. ....+-|.|+|++|+|||++|+++++.. ... .+.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 4689999999999887621 1123568999999999999999999987 222 2223321
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCceEEEEccccchhh-------------hhhcCCc------CCC
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT-LSKKKFALLLDDLWERVD-------------LKKIGVP------LPK 190 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~-------------~~~~~~~------~~~ 190 (800)
+ +.... .... +.....+... -..++.+|+||+++.... ...+... -..
T Consensus 119 ~----l~~~~-------~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 D----LVSKW-------MGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp H----HHSCC----------C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred H----Hhhhh-------cchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 1 11110 1111 2222333332 245789999999974310 1111111 122
Q ss_pred CcEEEEEeCCcccccc-c--CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCC-hhHHHHHH
Q 041843 191 NSAVVFTTRFVDVCGG-M--EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGL-PLALIIIG 264 (800)
Q Consensus 191 ~s~iivTtR~~~~~~~-~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 264 (800)
+..||.||..+..... + .....+.++..+.++-.+++..++.......+ ......|++.+.|. +-.|..+.
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566667765432210 0 23357789999999999999988765432112 56678899999884 54555544
No 187
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.33 E-value=4e-06 Score=86.43 Aligned_cols=151 Identities=14% Similarity=0.173 Sum_probs=85.9
Q ss_pred cccchhHHHHHHHHHhcc--------------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccC
Q 041843 63 TVVGLQSQLEQVWRCLVQ--------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 128 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~--------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 128 (800)
.++|.++..+++.+.+.. ......+.|+|++|+|||++|+++++.... .......-++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHH--
Confidence 579999888888766531 224567999999999999999998887622 111111112333211
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch-----------hhhhhc---CCcCCCCcEE
Q 041843 129 LEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER-----------VDLKKI---GVPLPKNSAV 194 (800)
Q Consensus 129 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----------~~~~~~---~~~~~~~s~i 194 (800)
.+. .... .........+.+.. +..+|++|+++.. ..+..+ ......+..|
T Consensus 109 ----------~l~---~~~~-g~~~~~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 109 ----------DLV---GQYI-GHTAPKTKEVLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp ----------GTC---CSST-TCHHHHHHHHHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred ----------Hhh---hhcc-cccHHHHHHHHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 010 0001 11122222222222 3569999999732 222222 1222346678
Q ss_pred EEEeCCcc----------cccccCccceEEeccCChHHHHHHHHHHhCcc
Q 041843 195 VFTTRFVD----------VCGGMEARRKFKVACLSDEDAWELFREKVGEE 234 (800)
Q Consensus 195 ivTtR~~~----------~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~ 234 (800)
|+||.... +... ....+.+++++.++..+++..++...
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred EEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 88875322 1111 23678999999999999998877543
No 188
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.29 E-value=2.4e-05 Score=83.31 Aligned_cols=176 Identities=12% Similarity=0.098 Sum_probs=102.0
Q ss_pred CcccchhHHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-----------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
.+++|.+..++++.+.+.. ....+.|.|+|++|+|||++|+++++.. .. ..+.++++.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--
Confidence 4689999999999988721 1134789999999999999999998886 21 223333322111
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCceEEEEccccchh-------------hhhhc-------CCcCC
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT-LSKKKFALLLDDLWERV-------------DLKKI-------GVPLP 189 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~-------------~~~~~-------~~~~~ 189 (800)
.. .... ......+... -...+.+|+||+++... ....+ ....+
T Consensus 187 ~~---------------~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 KY---------------VGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp --------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cc---------------cchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 00 0111 1222222222 23456899999996430 01111 11112
Q ss_pred CCcEEEEEeCCcccccc--c-CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChh-HHHHHH
Q 041843 190 KNSAVVFTTRFVDVCGG--M-EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPL-ALIIIG 264 (800)
Q Consensus 190 ~~s~iivTtR~~~~~~~--~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 264 (800)
....||.||........ . .....+.+...+.++..+++...+........ .+....+++.+.|..- +|..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT---QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 24566667765333211 0 12246889999999999999888755432222 5677889999988654 554443
No 189
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.28 E-value=2e-05 Score=85.21 Aligned_cols=178 Identities=15% Similarity=0.147 Sum_probs=103.5
Q ss_pred CcccchhHHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-----------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
.+++|.+...+.+.+.+.. ....+.|.|+|++|+|||++|+++++.. .. . -++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---~~--~--~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NN--S--TFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---CS--S--EEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---CC--C--CEEEEeHHH---
Confidence 4689999999999887621 1234789999999999999999999886 11 1 223333221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh-------------hhhhcCCcC------CCC
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV-------------DLKKIGVPL------PKN 191 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~~------~~~ 191 (800)
+.... .+. ......... ...-..++.+|+||+++... ....+...+ ..+
T Consensus 204 -l~~~~---~g~-----~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 -LVSKW---LGE-----SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred -HHhhh---cch-----HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 11000 110 111222222 12223578899999997430 111221111 235
Q ss_pred cEEEEEeCCcccccc--c-CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCC-hhHHHHHH
Q 041843 192 SAVVFTTRFVDVCGG--M-EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGL-PLALIIIG 264 (800)
Q Consensus 192 s~iivTtR~~~~~~~--~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 264 (800)
..||.||..+..... . .....+.++..+.++..+++..++.......+ ......|++.+.|. +-.|..+.
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 677777765433211 0 22357788888999999999888755432222 56678899999884 44555444
No 190
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.27 E-value=8.6e-06 Score=87.11 Aligned_cols=123 Identities=13% Similarity=0.201 Sum_probs=57.5
Q ss_pred cccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccc-ccccccccccc
Q 041843 416 RGWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQL-PTGISKLVSLQ 492 (800)
Q Consensus 416 ~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~ 492 (800)
..+.+|+.+.+. +.+..++ .|.+|.+|+.+.+..+ ++.++...|.++.+|+.+.+..+ +..+ ...+.++..+.
T Consensus 68 ~~c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 68 QGCRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTCTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTCCCSE
T ss_pred hCCCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeecccccc
Confidence 344455555554 2244443 3555666666665433 45555555555555555544332 1111 11122222111
Q ss_pred EEeccCCCCccc-chhhhcCccCceecccccccccccchhhhCCCCCCcEEEeee
Q 041843 493 LLDISYTSVTGL-PEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFA 546 (800)
Q Consensus 493 ~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~ 546 (800)
..... .+..+ ...+.++.+|+.+.+..+ +..++.+++.++.+|+.+.+..
T Consensus 144 ~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 144 ITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp EECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 11111 11111 123556667777776533 3556666667777777666643
No 191
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.25 E-value=2e-05 Score=84.30 Aligned_cols=103 Identities=16% Similarity=0.239 Sum_probs=47.5
Q ss_pred CCCCCcceEEEeecCC---CcccccccccCCCCCcEEEccCcccccccc-ccccccccccEEeccCCCCcccch-hhhcC
Q 041843 437 VPTCPHLLTLFLNDNP---LRTITGGFFQSMPCLTVLKMSDNIMLRQLP-TGISKLVSLQLLDISYTSVTGLPE-GLKAL 511 (800)
Q Consensus 437 ~~~~~~L~~L~l~~~~---l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~l 511 (800)
|.+|.+|+.+.+..+. ++.+....|..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..++. .+..+
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c 159 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYC 159 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccce-eeeecccceecc
Confidence 4555555555555432 44455555555555555544433 22222 23445555555555432 222222 34445
Q ss_pred ccCceecccccccccccchhhhCCCCCCcEEEee
Q 041843 512 VNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMF 545 (800)
Q Consensus 512 ~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~ 545 (800)
.+|+.+.+..+ +..+...++.+ .+|+.+.+.
T Consensus 160 ~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip 190 (394)
T 4gt6_A 160 YSLHTVTLPDS--VTAIEERAFTG-TALTQIHIP 190 (394)
T ss_dssp TTCCEEECCTT--CCEECTTTTTT-CCCSEEEEC
T ss_pred cccccccccce--eeEeccccccc-cceeEEEEC
Confidence 55555555432 34444444432 345555543
No 192
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.24 E-value=1.4e-06 Score=91.02 Aligned_cols=116 Identities=22% Similarity=0.196 Sum_probs=62.5
Q ss_pred cccCCCCCcEEEccCccccccccccccccccccEEeccCCCCcc-cchhhh--cCccCceeccccc--cc-----ccccc
Q 041843 460 FFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYTSVTG-LPEGLK--ALVNLKCLNLDWA--DE-----LVEVP 529 (800)
Q Consensus 460 ~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~i~--~l~~L~~L~l~~~--~~-----l~~lp 529 (800)
++..+++|+.|++++|..+ .+|. + .+++|++|+|..|.+.. ....+. .+++|++|+|+.+ .. +..+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3566777888888776322 3343 3 36778888887776544 112232 6777777777421 10 11111
Q ss_pred hhh-hCCCCCCcEEEeeecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccchh
Q 041843 530 QQL-LSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEA 584 (800)
Q Consensus 530 ~~~-~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 584 (800)
..+ ...+++|++|++.+|.+.... .........+++|+.|+++.|.+..
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~------~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVV------VEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHH------HHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHH------HHHHHhCccCCCCCEEECCCCCCCh
Confidence 110 124678888888777654210 0111112346677777777766544
No 193
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=3.1e-05 Score=80.46 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=100.4
Q ss_pred cccchhHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 63 TVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
++.|-++..++|.+.+.- -..++-|.++||+|+|||.||+++++.. ... .+.+..+.-.+
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~s-- 220 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCK---FIRVSGAELVQ-- 220 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCE---EEEEEGGGGSC--
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCC---ceEEEhHHhhc--
Confidence 467888888888776531 1345779999999999999999999997 222 23333322110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCceEEEEccccchh----------------hhhhcCC---cC--
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT-LSKKKFALLLDDLWERV----------------DLKKIGV---PL-- 188 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~----------------~~~~~~~---~~-- 188 (800)
.... ..+..++.+... -...+++|++|+++... .+..+.. .+
T Consensus 221 ---------------k~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 221 ---------------KYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp ---------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred ---------------cccc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 0111 112223333332 24578999999986320 0111111 11
Q ss_pred CCCcEEEEEeCCccccc-----ccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 189 PKNSAVVFTTRFVDVCG-----GMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 189 ~~~s~iivTtR~~~~~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
..+..||.||..+...+ .-..+..+.++.-+.++-.++|+.+........+-+ ...+++.+.|.-
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 12556777777555432 113456899999999999999988876554333323 466778887754
No 194
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=1.4e-06 Score=91.04 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=83.0
Q ss_pred cchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCcccccccchHHHhh--CCCCCcEEEEEecc
Q 041843 504 LPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYVNVAEELL--GLKYLEVLEITFRS 581 (800)
Q Consensus 504 lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~ 581 (800)
++..+..+++|+.|++++|..+ .++. + .+++|++|++..|.+.. .....+. .+++|+.|+++.+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l~~---------~~l~~l~~~~lp~L~~L~L~~~~ 230 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGLPD---------SVVEDILGSDLPNLEKLVLYVGV 230 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBCCH---------HHHHHHHHSBCTTCCEEEEECBC
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCCCh---------HHHHHHHHccCCCCcEEEEeccc
Confidence 4455667778888888776332 3444 3 37889999988777654 3444554 68888888886421
Q ss_pred chhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccccccCCCCcCCCCccEEe
Q 041843 582 FEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDMVQKSRQPCVFRSLEEVT 661 (800)
Q Consensus 582 ~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~ 661 (800)
..... .. .++.+ . .......+++|+.|.+.+|.........+.. ...+++|+.|+
T Consensus 231 ~~~~~----~~----~~~~l--------~--~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-------a~~~~~L~~Ld 285 (362)
T 2ra8_A 231 EDYGF----DG----DMNVF--------R--PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-------SDILPQLETMD 285 (362)
T ss_dssp GGGTC----CS----CGGGT--------G--GGSCTTTCTTCCEEEEESCTTHHHHHHHHHH-------CSSGGGCSEEE
T ss_pred ccccc----ch----hHHHH--------H--HHHhcCCCCCcCEEeCCCCCCchHHHHHHHh-------CccCCCCCEEE
Confidence 10000 00 00000 0 0011134688888888887754321111111 02367888888
Q ss_pred eecCCCCCCC------hhhhcCCCCcEEEEecCc
Q 041843 662 VDNCGNLKHL------TFLVFAPNLKSISVRDCD 689 (800)
Q Consensus 662 l~~c~~l~~l------~~l~~l~~L~~L~l~~~~ 689 (800)
|+.+ .+.+. ..+..+++|+.|+|++|.
T Consensus 286 Ls~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 286 ISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 8665 45542 123567888888888775
No 195
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.22 E-value=2.7e-05 Score=79.59 Aligned_cols=171 Identities=15% Similarity=0.165 Sum_probs=100.3
Q ss_pred CcccchhHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 129 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 129 (800)
.+++|.++.++++.+.+.. -...+.|.|+|++|+|||++|+++++.. .. ..+.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~---~~i~v~------~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA---NFISIK------G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---EEEEEC------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CC---CEEEEE------h
Confidence 4689999988888877642 1245789999999999999999999986 22 122222 2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh-------------------h-hhhcCC-cC
Q 041843 130 EKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV-------------------D-LKKIGV-PL 188 (800)
Q Consensus 130 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------------~-~~~~~~-~~ 188 (800)
.++.... .+. .. ......+.......+.++++|+++... . +..+.. .-
T Consensus 83 ~~l~~~~---~g~-----~~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMW---FGE-----SE---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHH---HTT-----CT---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhh---cCc-----hH---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 2222222 111 01 111222333334578999999996421 0 111111 11
Q ss_pred CCCcEEEEEeCCcccccc--c---CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhH
Q 041843 189 PKNSAVVFTTRFVDVCGG--M---EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLA 259 (800)
Q Consensus 189 ~~~s~iivTtR~~~~~~~--~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 259 (800)
..+..||.||........ . .....+.++..+.++-.++++..+.......+.+ ...+++.+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 225677778775533221 1 2235789999999999999988875544322222 34566677777644
No 196
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.19 E-value=1.6e-06 Score=81.86 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=41.0
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++||+++++++.+.+... ..+.+.|+|++|+|||++|+++++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~-~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR-TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC-CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999998775 45678999999999999999999886
No 197
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.10 E-value=1.3e-05 Score=87.27 Aligned_cols=148 Identities=14% Similarity=0.166 Sum_probs=82.6
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC--C--CCCEEEEEEEcCccCHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP--T--DFDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~--~--~f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
..++||+++++++...+... ...-+.|+|++|+|||++|+.+++...... . ....++.++++ .
T Consensus 180 d~iiGr~~~i~~l~~~l~r~-~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------~ 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR-TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------T 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS-SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCccCcHHHHHHHHHHHhcc-CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------c
Confidence 45899999999999998764 445678999999999999999998862110 0 01122233332 0
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEccccchhhhhhcCCcCCCC-cEEEEEeCCccc------cc-ccC
Q 041843 138 KKIGLYTDSWKSKSLEEKAQDIFKTL-SKKKFALLLDDLWERVDLKKIGVPLPKN-SAVVFTTRFVDV------CG-GME 208 (800)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~~~~~~~~~~~~~-s~iivTtR~~~~------~~-~~~ 208 (800)
...+ . .... ...+...+ ...+.+|++| ...+....+...+..| .++|.+|..... .. ...
T Consensus 247 ~~~g----~-~e~~----~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 247 KYRG----E-FEDR----LKKVMDEIRQAGNIILFID--AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp -----------CTT----HHHHHHHHHTCCCCEEEEC--C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred cccc----h-HHHH----HHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 0000 0 0111 22222222 3567899999 2222222333333343 556666654431 01 111
Q ss_pred ccceEEeccCChHHHHHHHHHHhCc
Q 041843 209 ARRKFKVACLSDEDAWELFREKVGE 233 (800)
Q Consensus 209 ~~~~~~l~~L~~~e~~~l~~~~~~~ 233 (800)
....+.+++.+.++..+++...+..
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred hCccceeCCCCHHHHHHHHHHHHHH
Confidence 2346899999999999999876643
No 198
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.10 E-value=7.1e-05 Score=74.57 Aligned_cols=173 Identities=15% Similarity=0.116 Sum_probs=95.6
Q ss_pred CcccchhHHHHHHHHHhc---cC--------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 62 PTVVGLQSQLEQVWRCLV---QE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~---~~--------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
.+++|.+...+++.+.+. .. ...+-+.|+|++|+||||+|+++++.. ...| +.++.+.-..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 568999988877766532 10 124568999999999999999999886 2222 3333221100
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh----------------hhhhcCCc----C-C
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV----------------DLKKIGVP----L-P 189 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~----~-~ 189 (800)
.............+.......+.++++|+++... .+..+... . .
T Consensus 84 ---------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 ---------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp ---------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred ---------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 0011222222233333334567899999984220 11111110 1 2
Q ss_pred CCcEEEEEeCCccccc-cc----CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCC-ChhHHH
Q 041843 190 KNSAVVFTTRFVDVCG-GM----EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGG-LPLALI 261 (800)
Q Consensus 190 ~~s~iivTtR~~~~~~-~~----~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~ 261 (800)
.+..||.||....... .+ .....+.++..+.++-.++++.+........+. ....+++.+.| .+--|.
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~----~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI----DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCCHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc----cHHHHHHHcCCCCHHHHH
Confidence 2556777776544221 11 123567888888888888888776543322221 13456667777 554444
No 199
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=5.5e-05 Score=80.07 Aligned_cols=167 Identities=14% Similarity=0.229 Sum_probs=99.1
Q ss_pred cccchhHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 63 TVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
++.|-++..++|.+.+.- -..++-|.++||+|+|||.+|+++++.. ... .+.+..+.-.+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s-- 253 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD-- 253 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC--
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc--
Confidence 467888888888776531 1346789999999999999999999997 222 23333322110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCceEEEEccccchh----------------hhhhcCCc---C--
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFK-TLSKKKFALLLDDLWERV----------------DLKKIGVP---L-- 188 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~----------------~~~~~~~~---~-- 188 (800)
..... .+..++.+.. .-...+++|++|+++... .+..+... +
T Consensus 254 ---------------k~~Ge-se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 ---------------KYIGE-SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp ---------------SSSSH-HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred ---------------ccchH-HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 01111 1222223322 234578999999986320 01111111 1
Q ss_pred CCCcEEEEEeCCcccccc--c---CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 189 PKNSAVVFTTRFVDVCGG--M---EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 189 ~~~s~iivTtR~~~~~~~--~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
..+..||.||..+..... . ..+..+.++..+.++-.++|+.+........+.+ ...+++.+.|.-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 125678888875554332 1 1345788988899999999988875544333323 456677777754
No 200
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=2.5e-05 Score=79.44 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=88.1
Q ss_pred chhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCCEEEEEEEcC-ccCHHHHHHHHHHHhCCC
Q 041843 66 GLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP-TDFDYVIWVVVSK-DLQLEKIQETIGKKIGLY 143 (800)
Q Consensus 66 gr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 143 (800)
|-++.++.+...+..+. .+.+.++|+.|+||||+|+.+++...... .+.+ +.+++.+. ...++++ +++...+...
T Consensus 1 g~~~~~~~L~~~i~~~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~ 77 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE-GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYS 77 (305)
T ss_dssp ---CHHHHHHHHHHTCS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSC
T ss_pred ChHHHHHHHHHHHHCCC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhc
Confidence 45667788888888774 78999999999999999999987531111 2333 34454432 2333333 2233333211
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hhhhhc---CCcCCCCcEEEEEeCCc-ccccccCccceEEecc
Q 041843 144 TDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTTRFV-DVCGGMEARRKFKVAC 217 (800)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~---~~~~~~~s~iivTtR~~-~~~~~~~~~~~~~l~~ 217 (800)
. ..+++-++|+|+++.. ...+.+ ....++.+.+|++|.++ .+...+... .+++.+
T Consensus 78 p------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 78 P------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp C------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred c------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 1 1245779999999643 222322 23334567777766543 333333333 899999
Q ss_pred CChHHHHHHHHHHh
Q 041843 218 LSDEDAWELFREKV 231 (800)
Q Consensus 218 L~~~e~~~l~~~~~ 231 (800)
++.++..+.+.+.+
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 201
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=4.1e-05 Score=80.97 Aligned_cols=166 Identities=19% Similarity=0.182 Sum_probs=97.8
Q ss_pred cccchhHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 63 TVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
++.|-++..++|.+.+.- -..++-|.++||+|+|||.+|+++++.. ... .+.+..+.-.
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~--- 252 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLV--- 252 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGC---
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhh---
Confidence 578889888888776421 1346789999999999999999999997 222 2333322110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCceEEEEccccch-------h-------------hhhhcCCcC-
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFK-TLSKKKFALLLDDLWER-------V-------------DLKKIGVPL- 188 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~-------~-------------~~~~~~~~~- 188 (800)
..... ..+..++.+.. .-...+++|++|+++.. . -+..+...-
T Consensus 253 --------------~~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 253 --------------QMYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp --------------SSCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred --------------hcccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 00011 11222333332 22357899999998521 0 011111111
Q ss_pred CCCcEEEEEeCCcccccc-----cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCC
Q 041843 189 PKNSAVVFTTRFVDVCGG-----MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGL 256 (800)
Q Consensus 189 ~~~s~iivTtR~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 256 (800)
..+..||.||..+..... -..+..+.++..+.++-.++|+.+........+-+ ...+++.+.|.
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 124567778876554332 12345789999999999999987765443322222 45677788775
No 202
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=4.5e-05 Score=80.34 Aligned_cols=167 Identities=19% Similarity=0.211 Sum_probs=99.6
Q ss_pred cccchhHHHHHHHHHhcc-----------C-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 63 TVVGLQSQLEQVWRCLVQ-----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~-----------~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
++.|-++..++|.+.+.- + ..++-|.++|++|+|||.+|+++++.. ... .+.+..+.-.
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~--- 280 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELV--- 280 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGC---
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhh---
Confidence 577888888888776421 1 356889999999999999999999997 222 2333322110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCceEEEEccccchh----------------h----hhhcCCcC-
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFK-TLSKKKFALLLDDLWERV----------------D----LKKIGVPL- 188 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~----------------~----~~~~~~~~- 188 (800)
...... .+..++.+.. .-...+++|++|+++... . +..+-..-
T Consensus 281 --------------sk~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 281 --------------QKYVGE-GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp --------------CCSSSH-HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred --------------cccCCH-HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 001111 1222333332 334678999999986320 0 11111111
Q ss_pred CCCcEEEEEeCCcccccc-----cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 189 PKNSAVVFTTRFVDVCGG-----MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 189 ~~~s~iivTtR~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
..+..||.||..+..... -..+..+.++..+.++-.++|+.++.......+-+ ...|++.+.|.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 124566777765444321 12456889999999999999988876554333323 456777887753
No 203
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=5.2e-05 Score=79.04 Aligned_cols=167 Identities=15% Similarity=0.164 Sum_probs=98.4
Q ss_pred cccchhHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 63 TVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
++.|-++..++|.+.+.- -...+-|.++||+|+|||.+|+++++.. ... .+.+..+.-.
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~---fi~v~~s~l~--- 253 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SAT---FLRIVGSELI--- 253 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCE---EEEEESGGGC---
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCC---EEEEEHHHhh---
Confidence 466888888888776421 1345789999999999999999999997 222 2223322110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCceEEEEccccchh----------------hhhhcCC---cC--
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT-LSKKKFALLLDDLWERV----------------DLKKIGV---PL-- 188 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~----------------~~~~~~~---~~-- 188 (800)
.. .....+..++.+... -...+++|++|+++... .+..+.. .+
T Consensus 254 --------------sk-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 254 --------------QK-YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp --------------CS-SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred --------------hc-cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 00 111122233333332 24578999999986320 0111111 11
Q ss_pred CCCcEEEEEeCCccccccc-----CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 189 PKNSAVVFTTRFVDVCGGM-----EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 189 ~~~s~iivTtR~~~~~~~~-----~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
..+..||.||..+...+.. ..+..+.++.-+.++-.++|+.+........+-+ ...+++.+.|.-
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 1255677788765553321 2345688888899999999988876554333323 456677777753
No 204
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.02 E-value=4.5e-05 Score=79.17 Aligned_cols=167 Identities=18% Similarity=0.206 Sum_probs=92.7
Q ss_pred CcccchhHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
..++|.+..++.+...+.. +.....++|+|+.|+||||||+.++... ...+. ..+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~-----~~sg~~~--------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH-----VTSGPVL--------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE-----EEETTTC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE-----EEechHh---------
Confidence 4688998888887766643 2244689999999999999999999987 22211 1111100
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hhhhhc-------CC---------------cCCCCcE
Q 041843 138 KKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VDLKKI-------GV---------------PLPKNSA 193 (800)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~-------~~---------------~~~~~s~ 193 (800)
....+. ..+...+ .++.++++|++... ...+.+ .. .++ ...
T Consensus 88 ------------~~~~~l-~~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~-~~~ 152 (334)
T 1in4_A 88 ------------VKQGDM-AAILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ-PFT 152 (334)
T ss_dssp ------------CSHHHH-HHHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------C-CCE
T ss_pred ------------cCHHHH-HHHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCC-CeE
Confidence 000111 1111122 23446677776432 111111 00 000 122
Q ss_pred EE-EEeCCccccccc--CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHH
Q 041843 194 VV-FTTRFVDVCGGM--EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIII 263 (800)
Q Consensus 194 ii-vTtR~~~~~~~~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 263 (800)
++ .|++...+...+ .....+.+++.+.++..+++.+.+.......+ .+.+..|++.++|.|..+..+
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~---~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIE---DAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHTSTTCHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHhcCCChHHHHHH
Confidence 22 233322221111 11235789999999999999887643322222 677899999999999755433
No 205
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=3.2e-06 Score=77.21 Aligned_cols=40 Identities=10% Similarity=0.320 Sum_probs=18.7
Q ss_pred CCCccEEeeecCCCCCCC--hhhhcC----CCCcEEEEecCcchhH
Q 041843 654 FRSLEEVTVDNCGNLKHL--TFLVFA----PNLKSISVRDCDDMEE 693 (800)
Q Consensus 654 ~~~L~~L~l~~c~~l~~l--~~l~~l----~~L~~L~l~~~~~l~~ 693 (800)
+++|++|+|++|..+++- ..+..+ ++|++|+|++|+.+++
T Consensus 84 ~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 84 LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 455555555555544432 223322 2455555555554443
No 206
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.02 E-value=5.4e-06 Score=83.42 Aligned_cols=169 Identities=15% Similarity=0.105 Sum_probs=90.3
Q ss_pred CcccchhHHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-----------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
.+++|.++.++++.+.+.. ....+-+.|+|++|+|||++|+++++.. ...|-. +..+.-.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~---v~~~~~~--- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFFS---MGGSSFI--- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCCC---CCSCTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEE---echHHHH---
Confidence 5689998888777766531 1123458899999999999999999986 222211 1111100
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh-----------------hhhhcCCcCC----
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV-----------------DLKKIGVPLP---- 189 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----------------~~~~~~~~~~---- 189 (800)
....... ...... .+......++.+|++|+++... .+..+...+.
T Consensus 82 -------~~~~~~~----~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 82 -------EMFVGLG----ASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp -------TSCSSSC----SSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred -------HhhcchH----HHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 0000000 001111 1122223467899999995431 1222222221
Q ss_pred --CCcEEEEEeCCccccc-c-c---CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 190 --KNSAVVFTTRFVDVCG-G-M---EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 190 --~~s~iivTtR~~~~~~-~-~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
....||.||....... . . .....+.++..+.++-.+++...+.......+.. ...+++.+.|.|
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~g~~ 218 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN----LQEVAKLTAGLA 218 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCC----TTTTTSSSCSSC
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccC----HHHHHHHcCCCC
Confidence 1246677776554221 1 1 1235678899999999999988775433222211 223455566654
No 207
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.99 E-value=1.3e-05 Score=71.97 Aligned_cols=46 Identities=24% Similarity=0.253 Sum_probs=36.6
Q ss_pred cccchhHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 63 TVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++|++..++++.+.+.. ......|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999888754 1133567899999999999999999876
No 208
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=7.7e-05 Score=78.78 Aligned_cols=167 Identities=17% Similarity=0.213 Sum_probs=93.3
Q ss_pred cccchhHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 63 TVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
++.|-++..++|.+.+.- -..++-|.++||+|+|||++|+++++.. ... .+.+..+.-.+
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~-- 244 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVH-- 244 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCC--
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhc--
Confidence 567888888888776531 1345779999999999999999999987 222 23333322110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCceEEEEccccchh----------------hhhhcCCc---C--
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFK-TLSKKKFALLLDDLWERV----------------DLKKIGVP---L-- 188 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~----------------~~~~~~~~---~-- 188 (800)
.... ..+..++.+.. .-...++++++|+++... .+..+... +
T Consensus 245 ---------------~~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 ---------------KYLG-EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp ---------------SSCS-HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred ---------------cccc-hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 0111 11222233332 234578999999985210 01111111 1
Q ss_pred CCCcEEEEEeCCccccc-----ccCccceEEeccC-ChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 189 PKNSAVVFTTRFVDVCG-----GMEARRKFKVACL-SDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 189 ~~~s~iivTtR~~~~~~-----~~~~~~~~~l~~L-~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
..+..||.||..+.... ....+..+.++.+ +.++-.++|+.+........+-+ ...+++.+.|.-
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 12556777887554432 1123446778655 45555667776665443332222 456777777753
No 209
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.95 E-value=9e-05 Score=80.49 Aligned_cols=175 Identities=16% Similarity=0.148 Sum_probs=102.0
Q ss_pred CcccchhHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 129 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 129 (800)
..++|.+..++++.+.+.. ....+-|.|+|++|+|||++|+++++.. .. ..+.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~~~---- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGPE---- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEHHH----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEchH----
Confidence 3589999999999887642 1345679999999999999999998876 22 233333211
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch----------------hhhhhcCCc--CCCC
Q 041843 130 EKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER----------------VDLKKIGVP--LPKN 191 (800)
Q Consensus 130 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~~~~~~~~--~~~~ 191 (800)
+...+ ...........+...-.+++.+|+||+++.. ..+-.+... ...+
T Consensus 274 ------l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 274 ------IMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp ------HHTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred ------hhhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 11110 1111122223333444567889999998421 011111111 1225
Q ss_pred cEEEEEeCCccccc-c----cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCC-hhHHHHH
Q 041843 192 SAVVFTTRFVDVCG-G----MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGL-PLALIII 263 (800)
Q Consensus 192 s~iivTtR~~~~~~-~----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 263 (800)
..||.||....... . ......+.+...+.++-.+++..++.......+.+ ..++++.+.|. +-.+..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 56666777543211 1 12334689999999999999998876544333222 35566667664 4444433
No 210
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.94 E-value=1.9e-05 Score=92.91 Aligned_cols=173 Identities=16% Similarity=0.186 Sum_probs=94.0
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC--C--CCCEEEEEEEcCccCHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP--T--DFDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~--~--~f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
..++||++++.++.+.+... ....+.|+|++|+|||++|+.+++...... . ....+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~-~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR-TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS-SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred cccCCcHHHHHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---------
Confidence 45899999999999998765 445678999999999999999998862210 0 122344444321100
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhc--CCceEEEEccccchh---------hhh-hcCCcCCC-CcEEEEEeCCccc-
Q 041843 138 KKIGLYTDSWKSKSLEEKAQDIFKTLS--KKKFALLLDDLWERV---------DLK-KIGVPLPK-NSAVVFTTRFVDV- 203 (800)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~---------~~~-~~~~~~~~-~s~iivTtR~~~~- 203 (800)
+. ............+.+.+. +++.+|++|++.... +.. .+...+.. +..+|.+|.....
T Consensus 240 ---g~----~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~ 312 (854)
T 1qvr_A 240 ---GA----KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYR 312 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHH
T ss_pred ---cC----ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHh
Confidence 00 011233444444444443 367999999996432 111 11111111 3445555543221
Q ss_pred ----c-cccCccceEEeccCChHHHHHHHHHHhCcc----cccCCCChHHHHHHHHHHhC
Q 041843 204 ----C-GGMEARRKFKVACLSDEDAWELFREKVGEE----TIESHHSIPQLAQTVAKECG 254 (800)
Q Consensus 204 ----~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~----~~~~~~~~~~~~~~i~~~~~ 254 (800)
. ........+.+++++.++..+++....... ..... .+....+++.+.
T Consensus 313 ~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~---~~al~~~~~ls~ 369 (854)
T 1qvr_A 313 EIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRIS---DSAIIAAATLSH 369 (854)
T ss_dssp HHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEEC---HHHHHHHHHHHH
T ss_pred hhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCC---HHHHHHHHHHHh
Confidence 1 111223468999999999999997544211 11111 455666666663
No 211
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.92 E-value=8.2e-05 Score=79.43 Aligned_cols=37 Identities=27% Similarity=0.471 Sum_probs=15.8
Q ss_pred CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccC
Q 041843 437 VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSD 474 (800)
Q Consensus 437 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~ 474 (800)
|.+|.+|+.+.+.++ +..++...|.++.+|+.+.+..
T Consensus 158 F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 158 FATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred hcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC
Confidence 344444444444332 2334444444444444444433
No 212
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.92 E-value=1.8e-05 Score=75.63 Aligned_cols=59 Identities=25% Similarity=0.153 Sum_probs=39.3
Q ss_pred Ccccchh----HHHHHHHHHhccCCC---ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE
Q 041843 62 PTVVGLQ----SQLEQVWRCLVQEPA---AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 123 (800)
Q Consensus 62 ~~~vgr~----~~~~~l~~~l~~~~~---~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 123 (800)
.+|++.+ ..++.+.+++..... .+.+.|+|++|+|||+||+++++... .....++|+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~ 90 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYV 90 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEh
Confidence 3455533 345555566554311 27899999999999999999999872 23344566654
No 213
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=1.1e-05 Score=73.77 Aligned_cols=87 Identities=10% Similarity=0.054 Sum_probs=56.2
Q ss_pred CCCcEEEccCccccccccccccccccccEEeccCC-CCccc-chhhhcC----ccCceecccccccccccchhhhCCCCC
Q 041843 465 PCLTVLKMSDNIMLRQLPTGISKLVSLQLLDISYT-SVTGL-PEGLKAL----VNLKCLNLDWADELVEVPQQLLSNFSR 538 (800)
Q Consensus 465 ~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~-~i~~l-p~~i~~l----~~L~~L~l~~~~~l~~lp~~~~~~L~~ 538 (800)
.+|+.||+++|.....--..+.++++|++|+|++| .|+.- -..+..+ ++|++|++++|..+++-.-..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 46888888888533333445677888888888888 46651 1234443 367888888876655533333567777
Q ss_pred CcEEEeeecCCCC
Q 041843 539 LRVLRMFATGVGS 551 (800)
Q Consensus 539 L~~L~l~~~~~~~ 551 (800)
|++|++++|...+
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 8888777775443
No 214
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.88 E-value=5.6e-05 Score=77.76 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=39.0
Q ss_pred CcccchhHHHHHHHHHhcc-------------CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-------------EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++|+++.++.+...+.. ......+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999887754 1235678899999999999999999887
No 215
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.83 E-value=0.00039 Score=74.84 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=98.2
Q ss_pred CcccchhHHHHHHHHHhcc--C---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ--E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~--~---------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
.+++|.++.++++.+.+.. + .-.+-|.|+|++|+|||+||++++... ...| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 4689999887777665421 1 123458899999999999999999986 2222 23333221110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch----------------hhhhhcCCc---C--C
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER----------------VDLKKIGVP---L--P 189 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~~~~~~~~---~--~ 189 (800)
............+.......+.+|+||+++.. ..+..+... + .
T Consensus 89 ----------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ----------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ----------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 01111112222333444567899999998542 112222111 1 1
Q ss_pred CCcEEEEEeCCcccccc--c---CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 190 KNSAVVFTTRFVDVCGG--M---EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 190 ~~s~iivTtR~~~~~~~--~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
.+..||.||..+..... . ..+..+.++..+.++-.++++.++.......+.+ ...+++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 25677777776544321 1 2234788898898888888887775544322222 345778888876
No 216
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.83 E-value=1.1e-05 Score=75.74 Aligned_cols=117 Identities=18% Similarity=0.128 Sum_probs=62.2
Q ss_pred ccCCCCCcEEEccCc-ccc----ccccccccccccccEEeccCCCCcc-----cchhhhcCccCceecccccccccc---
Q 041843 461 FQSMPCLTVLKMSDN-IML----RQLPTGISKLVSLQLLDISYTSVTG-----LPEGLKALVNLKCLNLDWADELVE--- 527 (800)
Q Consensus 461 ~~~l~~L~~L~Ls~~-~~~----~~lp~~i~~L~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~~--- 527 (800)
+...++|++|+|++| ... ..+...+...++|++|+|++|.|.. +...+...++|++|++++|.. +.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i-~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI-SGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC-CHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC-CHHHH
Confidence 344555555555554 221 1233334445556666666665543 334445555666666665542 22
Q ss_pred --cchhhhCCCCCCcEEEe--eecCCCCCCcccccccchHHHhhCCCCCcEEEEEeccchh
Q 041843 528 --VPQQLLSNFSRLRVLRM--FATGVGSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFEA 584 (800)
Q Consensus 528 --lp~~~~~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 584 (800)
+... +...++|++|++ .+|.+.... .......+...++|+.|+++.|.+..
T Consensus 111 ~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g-----~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 111 LALVEA-LQSNTSLIELRIDNQSQPLGNNV-----EMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHG-GGGCSSCCEEECCCCSSCCCHHH-----HHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHH-HHhCCCceEEEecCCCCCCCHHH-----HHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 2222 455667777777 666654310 00244555666778888888777654
No 217
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.82 E-value=0.00015 Score=84.53 Aligned_cols=153 Identities=18% Similarity=0.245 Sum_probs=91.8
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCC---CCCEEEE-EEEcCccCHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT---DFDYVIW-VVVSKDLQLEKIQETIG 137 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~---~f~~~~w-v~~~~~~~~~~~~~~i~ 137 (800)
..++||+++++++.+.+... ...-+.|+|++|+|||++|+.+++......- .....+| ++...-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~-~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----------- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR-RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CCccCCHHHHHHHHHHHhcc-CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----------
Confidence 45899999999999998875 4567789999999999999999987621100 0122222 111110
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcC-CceEEEEccccch----------hh-hhhcCCcCCC-CcEEEEEeCCcccc
Q 041843 138 KKIGLYTDSWKSKSLEEKAQDIFKTLSK-KKFALLLDDLWER----------VD-LKKIGVPLPK-NSAVVFTTRFVDVC 204 (800)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~----------~~-~~~~~~~~~~-~s~iivTtR~~~~~ 204 (800)
+. . .......+.....+.+.+.. ++.+|++|++... .+ ...+...+.. +..+|.+|......
T Consensus 254 --~~--~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 254 --LA--G-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFS 328 (758)
T ss_dssp ---C--C-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHH
T ss_pred --hc--c-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHh
Confidence 00 0 01233455555656555543 5789999998643 11 2223233333 45666666533211
Q ss_pred c-------ccCccceEEeccCChHHHHHHHHHHh
Q 041843 205 G-------GMEARRKFKVACLSDEDAWELFREKV 231 (800)
Q Consensus 205 ~-------~~~~~~~~~l~~L~~~e~~~l~~~~~ 231 (800)
. .......+.++..+.++..+++....
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 0 11122368999999999999987654
No 218
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.82 E-value=7.4e-05 Score=86.92 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=83.1
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC--CC--CCEEEEEEEcCccCHHHHHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP--TD--FDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~--~~--f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
..++||+++++++...+... ...-+.|+|++|+|||++|+.+++...... .. ...++.++. .
T Consensus 180 d~iiG~~~~i~~l~~~l~~~-~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------------g 245 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR-TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------------G 245 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS-SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCccCchHHHHHHHHHHhCC-CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------c
Confidence 45899999999999998765 445688999999999999999998862211 00 111222222 0
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchhhhhhcCCcCCC-CcEEEEEeCCccc------ccc-cCc
Q 041843 138 KKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPK-NSAVVFTTRFVDV------CGG-MEA 209 (800)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~-~s~iivTtR~~~~------~~~-~~~ 209 (800)
.... . ......... +...-..++.+|++|. .......+...+.. ..++|.||..... -.. ...
T Consensus 246 ~~~~--G--~~e~~l~~~---~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rR 316 (758)
T 3pxi_A 246 TKYR--G--EFEDRLKKV---MDEIRQAGNIILFIDA--AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERR 316 (758)
T ss_dssp -----------CTTHHHH---HHHHHTCCCCEEEECC----------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred cccc--c--hHHHHHHHH---HHHHHhcCCEEEEEcC--chhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhh
Confidence 0000 0 011112222 2222336778999992 22222223333333 4566666664441 000 112
Q ss_pred cceEEeccCChHHHHHHHHHHhCc
Q 041843 210 RRKFKVACLSDEDAWELFREKVGE 233 (800)
Q Consensus 210 ~~~~~l~~L~~~e~~~l~~~~~~~ 233 (800)
...+.++..+.++..+++......
T Consensus 317 f~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTTT
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHH
Confidence 256899999999999999876543
No 219
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.75 E-value=2.2e-05 Score=77.54 Aligned_cols=58 Identities=26% Similarity=0.346 Sum_probs=25.4
Q ss_pred CCCCcEEEccCcccccc---ccccccccccccEEeccCCCCcccchhhhcCc--cCceecccccc
Q 041843 464 MPCLTVLKMSDNIMLRQ---LPTGISKLVSLQLLDISYTSVTGLPEGLKALV--NLKCLNLDWAD 523 (800)
Q Consensus 464 l~~L~~L~Ls~~~~~~~---lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~l~--~L~~L~l~~~~ 523 (800)
+++|+.|+|++| .+.. +|..+..+++|++|+|++|.|+.+ ..+..+. +|+.|++++|.
T Consensus 169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence 444555555544 2222 223344455555555555554443 1222222 45555555444
No 220
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.74 E-value=1.4e-05 Score=75.13 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=78.0
Q ss_pred CCCCCcceEEEeecC-CCcccc----cccccCCCCCcEEEccCcccccc-----ccccccccccccEEeccCCCCcc---
Q 041843 437 VPTCPHLLTLFLNDN-PLRTIT----GGFFQSMPCLTVLKMSDNIMLRQ-----LPTGISKLVSLQLLDISYTSVTG--- 503 (800)
Q Consensus 437 ~~~~~~L~~L~l~~~-~l~~~~----~~~~~~l~~L~~L~Ls~~~~~~~-----lp~~i~~L~~L~~L~L~~~~i~~--- 503 (800)
+...+.|++|+|++| .+.... ...+...++|++|+|++| .+.. +...+...++|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 355688888888888 765321 223566788999999998 4432 44555666889999999998876
Q ss_pred --cchhhhcCccCceecc--cccccccc-----cchhhhCCCCCCcEEEeeecCCC
Q 041843 504 --LPEGLKALVNLKCLNL--DWADELVE-----VPQQLLSNFSRLRVLRMFATGVG 550 (800)
Q Consensus 504 --lp~~i~~l~~L~~L~l--~~~~~l~~-----lp~~~~~~L~~L~~L~l~~~~~~ 550 (800)
+...+...++|++|++ ++|.. +. +.. .+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i-~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPL-GNNVEMEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCC-CHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCC-CHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence 5666777888999999 65643 32 222 2556688999999888653
No 221
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=4.3e-05 Score=75.49 Aligned_cols=77 Identities=26% Similarity=0.340 Sum_probs=49.6
Q ss_pred CCcceEEEeecCCCccccc--ccccCCCCCcEEEccCccccccccccccccc--cccEEeccCCCCcc-cc-------hh
Q 041843 440 CPHLLTLFLNDNPLRTITG--GFFQSMPCLTVLKMSDNIMLRQLPTGISKLV--SLQLLDISYTSVTG-LP-------EG 507 (800)
Q Consensus 440 ~~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~--~L~~L~L~~~~i~~-lp-------~~ 507 (800)
+++|++|+|++|.+..+++ ..+..+++|++|+|++| .+..+ ..+..+. +|++|+|++|.+.. +| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4566666666666665442 34567778888888877 55554 2344444 78888888887765 43 23
Q ss_pred hhcCccCceec
Q 041843 508 LKALVNLKCLN 518 (800)
Q Consensus 508 i~~l~~L~~L~ 518 (800)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56677777776
No 222
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.69 E-value=3.6e-05 Score=72.03 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCC
Q 041843 67 LQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYT 144 (800)
Q Consensus 67 r~~~~~~l~~~l~~~--~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 144 (800)
.++.++.+.+++..- .....++|+|+.|+||||||+++++......+ ..+++++ ..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g--~~~~~~~------~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG--IRGYFFD------TKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC--CCCCEEE------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC--CeEEEEE------HHHHHHHHHHHhcCch
Confidence 445555555555431 23578999999999999999999988721111 1233333 3444444443332111
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCceEEEEccccc--hh-----hhhhcCCc-CCCCcEEEEEeCC
Q 041843 145 DSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWE--RV-----DLKKIGVP-LPKNSAVVFTTRF 200 (800)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~--~~-----~~~~~~~~-~~~~s~iivTtR~ 200 (800)
.. . +.+.+. ++-+|||||++. .. .+..+... ...+..+|+||..
T Consensus 91 ----~~---~----~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 91 ----DT---K----FLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp ----CS---H----HHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ----HH---H----HHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11 1 122222 467899999963 11 12222111 1247788888873
No 223
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.67 E-value=0.00039 Score=75.44 Aligned_cols=47 Identities=26% Similarity=0.269 Sum_probs=37.0
Q ss_pred CcccchhHHHHHHHHHh---ccC-CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCL---VQE-PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l---~~~-~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++|.++.++++..++ ..+ ...+-+.++|++|+|||++|+++++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 57899999887665543 333 234679999999999999999999886
No 224
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.64 E-value=0.0002 Score=81.68 Aligned_cols=168 Identities=15% Similarity=0.145 Sum_probs=98.3
Q ss_pred cccchhHHHHHHHHHhc----c-----C---CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 63 TVVGLQSQLEQVWRCLV----Q-----E---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~----~-----~---~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
++.|-++.+++|.+.+. . . ..++-|.++|++|+|||+||+++++.. ..+ .+.++.+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~----- 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE----- 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHH-----
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHH-----
Confidence 46788887777776642 1 1 245789999999999999999999886 222 33444321
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccchh-------------hhhhcCC---cCCC--Cc
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWERV-------------DLKKIGV---PLPK--NS 192 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~---~~~~--~s 192 (800)
+. .. ............+...-...+.+|++|+++... .+..+.. .+.. +.
T Consensus 274 -----l~---sk----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 -----IM---SK----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -----HH---SS----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred -----hh---cc----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 11 10 011112222223333345678999999986421 0111111 1111 44
Q ss_pred EEEEEeCCcccccc-c----CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 193 AVVFTTRFVDVCGG-M----EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 193 ~iivTtR~~~~~~~-~----~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
.||.||........ + ..+..++++..+.++-.++++.+........+.+ ...+++++.|.-
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 56667765443221 1 2345789999999999999988876554333323 456778888764
No 225
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.54 E-value=0.0017 Score=69.08 Aligned_cols=274 Identities=13% Similarity=0.131 Sum_probs=153.9
Q ss_pred cccccccceEEEccccc---cCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccccccccc
Q 041843 414 DVRGWEMGRRLSLMKNS---IGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKL 488 (800)
Q Consensus 414 ~~~~~~~l~~l~l~~~~---~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L 488 (800)
.+..+.+|+.+.+..+. +..+. .|.+|.+|+.+.+..+ ++.+....|..+.+|+.+.+..+ ....-...+..+
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c 159 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYC 159 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecc
Confidence 35667889999988764 44444 4788999998877654 77888888999999999999765 322234457788
Q ss_pred ccccEEeccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeecCCCCCCccccccc----chHH
Q 041843 489 VSLQLLDISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFATGVGSYGRFSSRYV----NVAE 564 (800)
Q Consensus 489 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~----~~~~ 564 (800)
.+|+.+.+..+ ++.+....-...+|+.+.+... +..+....+.++.+|..................... ....
T Consensus 160 ~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (394)
T 4gt6_A 160 YSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALI 236 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEE
T ss_pred cccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceecccccccccccceeeccccccccccc
Confidence 99999998655 5555554334467888888643 456666668888888888765543322111000000 0000
Q ss_pred HhhCCCCCcEEEEEeccchhHHHhhhcccccccceecccccccCCccccccCcCCcccCceEEeeccCCcceEEeccccc
Q 041843 565 ELLGLKYLEVLEITFRSFEAYQTFLSSQKLRSCTQALFLHEFCREESIGVADLADLEQLNTLYFRSCDWIKGLKIDYKDM 644 (800)
Q Consensus 565 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~ 644 (800)
.......+..+.+. +.+..+... ...-...++.+.+... ...+....+..++.|+.+.+.. .+..++..-.
T Consensus 237 ~~~~~~~~~~~~ip-~~v~~i~~~--aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF-- 307 (394)
T 4gt6_A 237 RYPSQREDPAFKIP-NGVARIETH--AFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPESVF-- 307 (394)
T ss_dssp ECCTTCCCSEEECC-TTEEEECTT--TTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTT--
T ss_pred ccccccccceEEcC-CcceEcccc--eeeecccccEEecccc--cceecCcccccccccccccCCC--cccccCceee--
Confidence 00111122222211 000000000 0001123344444321 1233334567778888888753 2333332221
Q ss_pred cccCCCCcCCCCccEEeeecCCCCCCCh--hhhcCCCCcEEEEecCcchhHhhccCCCCCcCcccCccCCcCCcccEeec
Q 041843 645 VQKSRQPCVFRSLEEVTVDNCGNLKHLT--FLVFAPNLKSISVRDCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLQL 722 (800)
Q Consensus 645 ~~l~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l 722 (800)
..+.+|+.+.+.+ +++.+. .+..+.+|+.+.|.. .++.+.. ..+..+.+|+.+.+
T Consensus 308 -------~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~------------~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 308 -------AGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPE------------SAFSNCTALNNIEY 364 (394)
T ss_dssp -------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCG------------GGGTTCTTCCEEEE
T ss_pred -------cCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhH------------hHhhCCCCCCEEEE
Confidence 1357888888754 344443 356778888888853 2333322 34556778888888
Q ss_pred cC
Q 041843 723 GG 724 (800)
Q Consensus 723 ~~ 724 (800)
.+
T Consensus 365 ~~ 366 (394)
T 4gt6_A 365 SG 366 (394)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 226
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.52 E-value=0.00011 Score=75.54 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=44.0
Q ss_pred cccchhHHHHHHHHHhccC--------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC
Q 041843 63 TVVGLQSQLEQVWRCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 125 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~~--------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 125 (800)
.++|.+..++.+...+... .....+.|+|++|+|||++|+.+++... ......+.++++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTE 85 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGG
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeeccc
Confidence 5789999998888877542 1235899999999999999999999862 2222345556554
No 227
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.51 E-value=6.4e-05 Score=67.13 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=34.6
Q ss_pred CcccchhHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
-.++|++..++++.+.+.. ......|.|+|++|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3578999999888887754 1123558899999999999999997765
No 228
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.47 E-value=4.3e-05 Score=68.58 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS 124 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 124 (800)
....++|+|+.|+|||||++.++.... . ....++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~--~g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-E--AGKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-T--TTCCEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-h--cCCcEEEEcHH
Confidence 347899999999999999999999873 2 22235565543
No 229
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.45 E-value=0.0073 Score=63.77 Aligned_cols=123 Identities=8% Similarity=0.109 Sum_probs=69.2
Q ss_pred ccccceEEEccccccCCCC--CCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCccccccccccccccccccEE
Q 041843 417 GWEMGRRLSLMKNSIGNLP--TVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLPTGISKLVSLQLL 494 (800)
Q Consensus 417 ~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L 494 (800)
...+++.+.+. ..+..++ .|.+|.+|+.+.+..+ ++.+....|.++ +|..+.+..+ +..++.......+|+.+
T Consensus 44 ~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i 118 (379)
T 4h09_A 44 DRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDF 118 (379)
T ss_dssp GGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEE
T ss_pred cccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCcccc
Confidence 33456666654 3344454 4777888888887643 677777777776 4665555433 44444433333467777
Q ss_pred eccCCCCcccchhhhcCccCceecccccccccccchhhhCCCCCCcEEEeeec
Q 041843 495 DISYTSVTGLPEGLKALVNLKCLNLDWADELVEVPQQLLSNFSRLRVLRMFAT 547 (800)
Q Consensus 495 ~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l~~~ 547 (800)
.+..+ +..+......-.+|..+.+..+ +..+....+.++.+|+.+.+...
T Consensus 119 ~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 119 EFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp ECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTT
T ss_pred cCCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccccc
Confidence 77554 3333333222235555555432 45555555667777777766543
No 230
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.41 E-value=0.0016 Score=64.44 Aligned_cols=168 Identities=16% Similarity=0.151 Sum_probs=90.4
Q ss_pred CcccchhHHHHHHHHHhcc--C---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ--E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~--~---------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
.+++|.++...++.+.... . .-.+-+.|+|+.|+||||||+.++... .. ..+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~~---~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CC---CEEEeeHH------
Confidence 4688988776666554321 1 112348999999999999999999886 21 22333221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEccccchh----------------hhhhcCCcC---C-
Q 041843 131 KIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLS-KKKFALLLDDLWERV----------------DLKKIGVPL---P- 189 (800)
Q Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~----------------~~~~~~~~~---~- 189 (800)
. +.... ..........+.+... ..+.++++|+++... .+..+...+ .
T Consensus 84 ~----~~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 D----FVEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp H----HHHSC--------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred H----HHHHH--------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 1 11100 0011122333333332 456899999984220 011221111 1
Q ss_pred -CCcEEEEEeCCcccccc-----cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 190 -KNSAVVFTTRFVDVCGG-----MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 190 -~~s~iivTtR~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
....++.||..+..... ......+.++..+.++-.++++.++.......+.+ ...+++.+.|.-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 12345556666555321 12345788999999988888887764433222212 345666776653
No 231
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.39 E-value=0.0027 Score=63.39 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=83.1
Q ss_pred CcccchhHHHHHHHHHhcc-----------C-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 129 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-----------~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 129 (800)
.++.|-++..+++.+.+.. + .-.+-+.|+|++|+||||||+.++... .. ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHhh
Confidence 4577888888887765421 0 112339999999999999999999886 22 2344432211000
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEccccchhh-------------hhhcCCcCC-----C
Q 041843 130 EKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-SKKKFALLLDDLWERVD-------------LKKIGVPLP-----K 190 (800)
Q Consensus 130 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~~-------------~~~~~~~~~-----~ 190 (800)
........+..+.+.. ...+.++++|+++.... ...+...+. .
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0001112223333332 34678999999864210 011111111 1
Q ss_pred CcEEEEEeCCccccccc-----CccceEEeccCChHHHHHHHHHHhC
Q 041843 191 NSAVVFTTRFVDVCGGM-----EARRKFKVACLSDEDAWELFREKVG 232 (800)
Q Consensus 191 ~s~iivTtR~~~~~~~~-----~~~~~~~l~~L~~~e~~~l~~~~~~ 232 (800)
...++.+|..+.+.... .-+..+.++..+.++-.++++....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 34566677766654321 2356788999999999999988764
No 232
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.39 E-value=0.0012 Score=66.90 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++.+.++|++|+|||+||+++++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999999999987
No 233
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.38 E-value=0.00014 Score=84.69 Aligned_cols=144 Identities=16% Similarity=0.156 Sum_probs=81.8
Q ss_pred CcccchhHHHHHHHHHhccC--------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHH
Q 041843 62 PTVVGLQSQLEQVWRCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQ 133 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~--------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 133 (800)
..++|.+..++.+...+... .....+.++|++|+|||++|+++++.. .......+.++++......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l---~~~~~~~i~i~~s~~~~~~--- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI---FGDEESMIRIDMSEYMEKH--- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH---HSCTTCEEEEEGGGGCSSC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh---cCCCcceEEEechhccccc---
Confidence 35899999998888877531 112379999999999999999999986 2223345556654321100
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEccccch--hhhhhcCC-----c---------CCCCcEEEEE
Q 041843 134 ETIGKKIGLYTDSWKSKSLEEKAQDIFKTLSKKKFALLLDDLWER--VDLKKIGV-----P---------LPKNSAVVFT 197 (800)
Q Consensus 134 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~~~~-----~---------~~~~s~iivT 197 (800)
.. ........++ ....-+|+||+++.. .....+.. . ...+.+||+|
T Consensus 565 --------------~~-~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 565 --------------ST-SGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp --------------CC-C---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred --------------cc-ccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 00 0001111111 123358999999643 11111110 0 1125688888
Q ss_pred eCCcc-----------------cccccCccceEEeccCChHHHHHHHHHHh
Q 041843 198 TRFVD-----------------VCGGMEARRKFKVACLSDEDAWELFREKV 231 (800)
Q Consensus 198 tR~~~-----------------~~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 231 (800)
|.... ....+ +..+.+.+++.++..+++...+
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl--~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRI--DEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTS--SEEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhC--CeEEecCCCCHHHHHHHHHHHH
Confidence 87311 11222 2478999999999888886654
No 234
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.34 E-value=0.0011 Score=66.81 Aligned_cols=169 Identities=16% Similarity=0.128 Sum_probs=91.5
Q ss_pred CCcccchhHHHHHHHHHhcc--C---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCH
Q 041843 61 EPTVVGLQSQLEQVWRCLVQ--E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 129 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~~--~---------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 129 (800)
-.+++|.++..+++.+.... . .-.+-+.|+|+.|+||||||+.++... . ...+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~---~~~i~~~~~----- 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---R---VPFITASGS----- 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---T---CCEEEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---C---CCEEEecHH-----
Confidence 35689988877776654321 1 112238999999999999999999886 2 122333321
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEccccch----------------hhhhhcCCcCCC--
Q 041843 130 EKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-SKKKFALLLDDLWER----------------VDLKKIGVPLPK-- 190 (800)
Q Consensus 130 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~----------------~~~~~~~~~~~~-- 190 (800)
. +.... .......+..+.+.. ...+.++++|+++.. ..+..+...+..
T Consensus 108 -~----~~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 108 -D----FVEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp -H----HHHST--------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred -H----HHHHH--------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 1 11100 001112222333333 345789999998421 011122111111
Q ss_pred ---CcEEEEEeCCcccccc-----cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 191 ---NSAVVFTTRFVDVCGG-----MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 191 ---~s~iivTtR~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
...++.||..+..... ......+.++..+.++-.+++..++.......+. ....+++.+.|+.
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~----~~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV----DLALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc----CHHHHHHHcCCCC
Confidence 2345556665554321 1234578899999998888888776443322221 2345666776654
No 235
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.29 E-value=0.0017 Score=70.23 Aligned_cols=166 Identities=15% Similarity=0.106 Sum_probs=93.0
Q ss_pred CCcccchhHHHHHHHHHhc---cC--------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCH
Q 041843 61 EPTVVGLQSQLEQVWRCLV---QE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 129 (800)
Q Consensus 61 ~~~~vgr~~~~~~l~~~l~---~~--------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 129 (800)
-.+++|.++.+.++.+... .. .-.+-+.|+|++|+|||+||++++... .. ..+.++.+.-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~---~~i~i~g~~~~~- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGSDFVE- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---CEEEEEGGGGTS-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEehhHHHH-
Confidence 3568999988777766542 11 112349999999999999999999886 21 233333322100
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc----CCceEEEEccccchh----------------hhhhcCCcC-
Q 041843 130 EKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLS----KKKFALLLDDLWERV----------------DLKKIGVPL- 188 (800)
Q Consensus 130 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~----~~~~LlvlDdv~~~~----------------~~~~~~~~~- 188 (800)
.........+...++ ..+.++++|+++... .+..+...+
T Consensus 103 --------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 103 --------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp --------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred --------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 000111222333332 245899999985320 111221111
Q ss_pred ----CCCcEEEEEeCCcccccc-----cCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 189 ----PKNSAVVFTTRFVDVCGG-----MEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 189 ----~~~s~iivTtR~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
..+..|+.||..+..... ...+..+.++..+.++-.++++.++.......+. ....+++.+.|+.
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv----~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV----DLALLAKRTPGFV 236 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS----TTHHHHTTSCSCC
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH----HHHHHHHhcCCCC
Confidence 123456666766554321 1234578999999999899998776443322221 2445677777765
No 236
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.24 E-value=0.0011 Score=76.81 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=94.3
Q ss_pred CcccchhHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 129 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 129 (800)
.+++|.++.++++.+++.. -.....|.|+|++|+||||||++++... ...| +.++...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchH----
Confidence 3588999888888877642 1245689999999999999999998876 2222 3333211
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHH-HHHHHhcCCceEEEEccccchh----------------hhhhcCCcC--CC
Q 041843 130 EKIQETIGKKIGLYTDSWKSKSLEEKAQ-DIFKTLSKKKFALLLDDLWERV----------------DLKKIGVPL--PK 190 (800)
Q Consensus 130 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~l~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~~--~~ 190 (800)
+. .. .......... .+.......+.++++|+++... .+..+.... ..
T Consensus 274 ------l~---~~-----~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~ 339 (806)
T 1ypw_A 274 ------IM---SK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp ------HS---SS-----STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTS
T ss_pred ------hh---hh-----hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccc
Confidence 10 00 1111222222 2333334578899999984220 111111111 12
Q ss_pred CcEEEEEeCCcccccc-c----CccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCCh
Q 041843 191 NSAVVFTTRFVDVCGG-M----EARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLP 257 (800)
Q Consensus 191 ~s~iivTtR~~~~~~~-~----~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 257 (800)
+..+|.||........ + .....+.+...+.++-.+++...+.......+.+ ..++++.+.|.-
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~----l~~la~~t~g~~ 407 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCC----THHHHHSCSSCC
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccch----hHHHHHhhcCcc
Confidence 4566667665433221 1 1234578888899999999987765544322222 234555565553
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.06 E-value=0.0032 Score=69.56 Aligned_cols=46 Identities=30% Similarity=0.413 Sum_probs=35.7
Q ss_pred cccchhHHHHHHHHHhc-----cCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 63 TVVGLQSQLEQVWRCLV-----QEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~-----~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+++|.++..+.+.+.+. .......+.|+|++|+||||||+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47888887777755432 12245689999999999999999999887
No 238
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.97 E-value=0.0003 Score=67.33 Aligned_cols=113 Identities=13% Similarity=-0.040 Sum_probs=63.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
..++.|+|+.|+||||++..++.+. ..+...++.+....+.. ....++..++...+........+..+.+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~---~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRL---EYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH---HHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHH---HhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 4799999999999999999998887 23333444444333221 12234444443322222223344444444444
Q ss_pred cCC-ceEEEEccccch--hhhhhcCCcCCCCcEEEEEeCCcc
Q 041843 164 SKK-KFALLLDDLWER--VDLKKIGVPLPKNSAVVFTTRFVD 202 (800)
Q Consensus 164 ~~~-~~LlvlDdv~~~--~~~~~~~~~~~~~s~iivTtR~~~ 202 (800)
.+. .-+||+|.+... +.++.+......+..||+|-++..
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccc
Confidence 334 459999998632 233332111112788999988543
No 239
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.88 E-value=0.00085 Score=67.22 Aligned_cols=69 Identities=17% Similarity=0.345 Sum_probs=46.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE--cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV--SKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFK 161 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 161 (800)
.+++.|+|++|+|||+||.+++... . ..+.|++. ... +.. ...+.+.....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G-----~~VlyIs~~~eE~-------------v~~-----~~~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-G-----GKDKYATVRFGEP-------------LSG-----YNTDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-H-----TTSCCEEEEBSCS-------------STT-----CBCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-C-----CCEEEEEecchhh-------------hhh-----hhcCHHHHHHHHHH
Confidence 3678999999999999999998762 1 12345565 222 111 11455666777777
Q ss_pred HhcCCceEEEEccccc
Q 041843 162 TLSKKKFALLLDDLWE 177 (800)
Q Consensus 162 ~l~~~~~LlvlDdv~~ 177 (800)
.+...+ +||+|++..
T Consensus 179 ~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHCS-EEEEECCTT
T ss_pred HHhhCC-EEEEecccc
Confidence 777667 999999854
No 240
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.82 E-value=0.015 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 58999999999999999999 443
No 241
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.80 E-value=0.0033 Score=60.54 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCC----------CCCCCCCCH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLY----------TDSWKSKSL 152 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----------~~~~~~~~~ 152 (800)
...++.|+|++|+||||+|..++. . ....++|++.....+...+.. +....+.. .........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 347999999999999999999987 2 124688888766555555443 22222210 000111122
Q ss_pred HHHHHHHHHHhcCCceEEEEcccc
Q 041843 153 EEKAQDIFKTLSKKKFALLLDDLW 176 (800)
Q Consensus 153 ~~~~~~l~~~l~~~~~LlvlDdv~ 176 (800)
......++..+..++-+||+|.+.
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcH
Confidence 334444444444457789999874
No 242
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.74 E-value=0.0035 Score=64.58 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS---WKSKSLEEKAQDI 159 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 159 (800)
...++.|+|++|+||||||.+++.... ..-..++|++....++.. .+++++..... ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 347999999999999999999988862 223457888877666644 44555543221 1234556666655
Q ss_pred HHHhc-CCceEEEEccccc
Q 041843 160 FKTLS-KKKFALLLDDLWE 177 (800)
Q Consensus 160 ~~~l~-~~~~LlvlDdv~~ 177 (800)
...++ .+.-++|+|.+..
T Consensus 132 ~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHTSCCSEEEEECTTT
T ss_pred HHHhhhcCCCeEEehHhhh
Confidence 55543 4567899999743
No 243
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.73 E-value=0.0096 Score=61.82 Aligned_cols=161 Identities=11% Similarity=-0.020 Sum_probs=97.4
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHH
Q 041843 74 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLE 153 (800)
Q Consensus 74 l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 153 (800)
+.+.+. +.-.++..++|+.|.||++.|+.+..... ...|+....+......+..++...
T Consensus 9 l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~------------------ 67 (343)
T 1jr3_D 9 LRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSL------------------ 67 (343)
T ss_dssp HHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHH------------------
T ss_pred HHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHH------------------
Confidence 344444 33568999999999999999999988652 123332111222222333333222
Q ss_pred HHHHHHHH-HhcCCceEEEEccccc---hhh---hhhcCCcCCCCcEEEEEeCCc-------ccccc-cCccceEEeccC
Q 041843 154 EKAQDIFK-TLSKKKFALLLDDLWE---RVD---LKKIGVPLPKNSAVVFTTRFV-------DVCGG-MEARRKFKVACL 218 (800)
Q Consensus 154 ~~~~~l~~-~l~~~~~LlvlDdv~~---~~~---~~~~~~~~~~~s~iivTtR~~-------~~~~~-~~~~~~~~l~~L 218 (800)
+.. -+-+.+-++|+|++.. ... +..+....+++..+|+++... .+... ......++..++
T Consensus 68 -----~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l 142 (343)
T 1jr3_D 68 -----CQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTP 142 (343)
T ss_dssp -----HHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCC
T ss_pred -----hcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCC
Confidence 211 1345677888999854 223 333333334577777666431 12222 123467899999
Q ss_pred ChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCChhHHHHH
Q 041843 219 SDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGLPLALIII 263 (800)
Q Consensus 219 ~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 263 (800)
+.++..+.+.+.+.......+ .+.+..+++.++|....+...
T Consensus 143 ~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 143 EQAQLPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp CTTHHHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHHH
Confidence 999999999888754443333 678889999999988766543
No 244
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.72 E-value=0.0012 Score=67.33 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHhccCC--CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE
Q 041843 67 LQSQLEQVWRCLVQEP--AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 123 (800)
Q Consensus 67 r~~~~~~l~~~l~~~~--~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 123 (800)
+...++.+.+++..-+ ....+.|+|+.|+|||+||+++++.... .....+.++.+
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~--~~g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSE--KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHH--HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHH--hcCCcEEEEEH
Confidence 3445555556665421 2478999999999999999999998720 22234555554
No 245
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.71 E-value=0.0029 Score=61.63 Aligned_cols=112 Identities=19% Similarity=0.186 Sum_probs=60.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCC----------------
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---------------- 147 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---------------- 147 (800)
..+++|.|+.|+|||||++.++..... .-..++|+.... ....+...+. .++......
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccC
Confidence 369999999999999999999866521 123466665433 3444443332 332211100
Q ss_pred -----CCCCHHHHHHHHHHHhc-CCce--EEEEccccc-----hhhhhhcCC---cC--CCCcEEEEEeCCc
Q 041843 148 -----KSKSLEEKAQDIFKTLS-KKKF--ALLLDDLWE-----RVDLKKIGV---PL--PKNSAVVFTTRFV 201 (800)
Q Consensus 148 -----~~~~~~~~~~~l~~~l~-~~~~--LlvlDdv~~-----~~~~~~~~~---~~--~~~s~iivTtR~~ 201 (800)
...+..+....+...+. .++- ++|+|.... ......+.. .+ ..+..||++|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11145555555554443 2444 999999852 211122111 11 1277888888754
No 246
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.71 E-value=0.0056 Score=59.98 Aligned_cols=92 Identities=11% Similarity=0.136 Sum_probs=52.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCC---CCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCC----C---CCCCCHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTD----S---WKSKSLE 153 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~---~~~~~~~ 153 (800)
..++.|+|++|+||||||..++....... ..-..++|+.....+....+. .++..++.... . ....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 47999999999999999999988641100 024578898877755554443 23344433210 0 0111222
Q ss_pred H---HHHHHHHHhc-CCceEEEEcccc
Q 041843 154 E---KAQDIFKTLS-KKKFALLLDDLW 176 (800)
Q Consensus 154 ~---~~~~l~~~l~-~~~~LlvlDdv~ 176 (800)
+ ....+.+.+. .+.-+||+|.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2 2233444443 356788888864
No 247
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.64 E-value=0.013 Score=60.65 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=41.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC---CCCCEEEEEEEcCccCHHHHHHHHHHHhC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDLQLEKIQETIGKKIG 141 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 141 (800)
...++.|+|++|+||||+|.+++....... +.-..++|++....++...+... +..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~-~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI-ADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHH-HHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH-HHHcC
Confidence 457999999999999999999988742111 13457899998887776665443 34443
No 248
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.57 E-value=0.012 Score=60.68 Aligned_cols=86 Identities=20% Similarity=0.193 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS---WKSKSLEEKAQDI 159 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 159 (800)
...++.|+|++|+||||||.+++.... ..-..++|++....++.. .++.++...+. ....+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 347999999999999999999987762 223468899887766543 24445433211 1223455555555
Q ss_pred HHHhc-CCceEEEEcccc
Q 041843 160 FKTLS-KKKFALLLDDLW 176 (800)
Q Consensus 160 ~~~l~-~~~~LlvlDdv~ 176 (800)
..... .+.-+||+|.+.
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 54443 356799999974
No 249
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.56 E-value=0.01 Score=60.98 Aligned_cols=93 Identities=18% Similarity=0.275 Sum_probs=56.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC---CCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS-------WKSKSL 152 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 152 (800)
...++.|+|++|+||||+|.+++....... +.-..++|++....++...+.+. +..++...+. ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~-~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENM-AKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH-HHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH-HHHhCCCHHHHhccEEEEeCCCH
Confidence 347999999999999999999988752110 01357899998887776665543 4444432110 011222
Q ss_pred H---HHHHHHHHHhc--CCceEEEEcccc
Q 041843 153 E---EKAQDIFKTLS--KKKFALLLDDLW 176 (800)
Q Consensus 153 ~---~~~~~l~~~l~--~~~~LlvlDdv~ 176 (800)
+ +....+...+. .+.-+||+|.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 2 23344444443 355788888874
No 250
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.54 E-value=0.0019 Score=59.81 Aligned_cols=114 Identities=19% Similarity=0.105 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc---cCHHHHHHHHHHHhCCCCCCC--CC-------CCH
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD---LQLEKIQETIGKKIGLYTDSW--KS-------KSL 152 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~~~~~--~~-------~~~ 152 (800)
..|.|++..|.||||.|-..+-+. -++...+.++..-.. .+...+...+.-.+......+ .. ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA---~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARA---VGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHH---HHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 466666666799999999998887 345556666654432 223333333310000000000 01 111
Q ss_pred HHHHHHHHHHhcCCc-eEEEEccccc--------hhhhhhcCCcCCCCcEEEEEeCCc
Q 041843 153 EEKAQDIFKTLSKKK-FALLLDDLWE--------RVDLKKIGVPLPKNSAVVFTTRFV 201 (800)
Q Consensus 153 ~~~~~~l~~~l~~~~-~LlvlDdv~~--------~~~~~~~~~~~~~~s~iivTtR~~ 201 (800)
.......++.+.+.+ =|||||++.. .+++-++...-+....||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 223344555554444 5999999832 233333333445688999999964
No 251
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.51 E-value=0.0025 Score=63.55 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=40.6
Q ss_pred CcccchhHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 125 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 125 (800)
..++|.+..+.++.+.+.. ......|.|+|++|+|||++|+.+++... ..-...+.++++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~---~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS---RWQGPFISLNCAA 67 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST---TTTSCEEEEEGGG
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC---ccCCCeEEEecCC
Confidence 3579999999888876653 11336788999999999999999998862 2222344555554
No 252
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.50 E-value=0.009 Score=59.57 Aligned_cols=88 Identities=13% Similarity=0.135 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHH-HHHHH
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KSKSLEEK-AQDIF 160 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~ 160 (800)
.++-|+|++|+||||||.+++....+ ...-..++|++....++.. .+++++...+.. .+.+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 37899999999999999998877621 1124578999988877754 256666543221 23345554 33332
Q ss_pred HH--h-cCCceEEEEccccch
Q 041843 161 KT--L-SKKKFALLLDDLWER 178 (800)
Q Consensus 161 ~~--l-~~~~~LlvlDdv~~~ 178 (800)
.. + +++.-++|+|-+...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 22 2 356789999998543
No 253
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.42 E-value=0.015 Score=60.05 Aligned_cols=86 Identities=19% Similarity=0.183 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KSKSLEEKAQDI 159 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 159 (800)
..+++.|.|++|+||||||.+++.... .....++|++....++... +..++...+.. ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~---~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHH
Confidence 347999999999999999999988762 2234688999877666432 34444322111 123344444444
Q ss_pred HHHh-cCCceEEEEcccc
Q 041843 160 FKTL-SKKKFALLLDDLW 176 (800)
Q Consensus 160 ~~~l-~~~~~LlvlDdv~ 176 (800)
.... ..+.-+||+|.+.
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 4333 2455689999974
No 254
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.40 E-value=0.0096 Score=69.20 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=37.8
Q ss_pred CcccchhHHHHHHHHHhccC--------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~--------~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++|.++.++.+...+... .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999998888776431 123479999999999999999999886
No 255
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.38 E-value=0.012 Score=62.12 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=50.1
Q ss_pred CCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcccccccc-ccccccccccEEeccCCCCcccch-hhhcCccC
Q 041843 437 VPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNIMLRQLP-TGISKLVSLQLLDISYTSVTGLPE-GLKALVNL 514 (800)
Q Consensus 437 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L 514 (800)
+.++..|+.+.+..+ ++.+....|.++.+|+.+.+..+ +..++ ..+.++.+|+.+.+.++.++.++. .+.++.+|
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 444555555555443 44455555555555555555432 22222 234445555555555555555433 34455555
Q ss_pred ceecccccccccccchhhhCCCCCCcEEEe
Q 041843 515 KCLNLDWADELVEVPQQLLSNFSRLRVLRM 544 (800)
Q Consensus 515 ~~L~l~~~~~l~~lp~~~~~~L~~L~~L~l 544 (800)
+.+.+..+ +..++..+|.++.+|+.+.+
T Consensus 313 ~~i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 313 SSVTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred CEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 55555422 44455444555555555444
No 256
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.35 E-value=0.017 Score=65.94 Aligned_cols=167 Identities=15% Similarity=0.230 Sum_probs=80.9
Q ss_pred CcccchhHHHHHHHHHhcc---------C---CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCH
Q 041843 62 PTVVGLQSQLEQVWRCLVQ---------E---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 129 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~---------~---~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 129 (800)
..+.|.++..+++.+.+.- . ...+-|.++|++|.|||.+|+++++.. ... ++.++ .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~----~ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECC----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEec----c
Confidence 4567888888887776531 0 234568899999999999999999987 221 22222 1
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEccccchh----------------hhhhcCCc---CC
Q 041843 130 EKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-SKKKFALLLDDLWERV----------------DLKKIGVP---LP 189 (800)
Q Consensus 130 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~----------------~~~~~~~~---~~ 189 (800)
. ++... +...+. ..++.+.+.- +..+++|+||+++... .+.++... +.
T Consensus 545 ~----~l~s~-------~vGese-~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 545 P----ELLTM-------WFGESE-ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp H----HHHTT-------TCSSCH-HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred c----hhhcc-------ccchHH-HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 1 12111 122333 3344444443 4578999999986320 01111111 11
Q ss_pred C--CcEEEEEeCCccccc-----ccCccceEEeccCChHHHHHHHHHHhCcccccCCCChHHHHHHHHHHhCCC
Q 041843 190 K--NSAVVFTTRFVDVCG-----GMEARRKFKVACLSDEDAWELFREKVGEETIESHHSIPQLAQTVAKECGGL 256 (800)
Q Consensus 190 ~--~s~iivTtR~~~~~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 256 (800)
. +..||-||..+..+. .-.-+..+.++.-+.++-.++|+.+........+-+ ...+++.+.|+
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d----l~~la~~t~g~ 682 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGF 682 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHhCCCC
Confidence 1 334444555443322 112356778887788888888877765544332222 34555666654
No 257
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.34 E-value=0.004 Score=61.36 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINN 106 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~ 106 (800)
..+++|.|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 47999999999999999999883
No 258
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.30 E-value=0.0034 Score=64.17 Aligned_cols=53 Identities=17% Similarity=0.111 Sum_probs=34.6
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc
Q 041843 73 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 126 (800)
Q Consensus 73 ~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 126 (800)
++++.+..=.....++|+|++|+|||||++.+++........+. ++++-+.+.
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER 215 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDER 215 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSC
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCC
Confidence 34455554334579999999999999999998876522122333 345666543
No 259
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.29 E-value=0.0049 Score=72.50 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=37.3
Q ss_pred cccchhHHHHHHHHHhccC--------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 63 TVVGLQSQLEQVWRCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~~--------~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++|.+..++.+...+... .....+.|+|+.|+|||++|+++++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999888888776431 123589999999999999999999886
No 260
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.22 E-value=0.0049 Score=62.62 Aligned_cols=47 Identities=13% Similarity=0.290 Sum_probs=38.1
Q ss_pred CcccchhHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++|++..+.++.+.+.. ......|.|+|++|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3589999999998887754 2234578899999999999999999875
No 261
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.21 E-value=0.01 Score=57.45 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=32.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccC--CC-CCCEEEEEEEcCccCH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDN--PT-DFDYVIWVVVSKDLQL 129 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~--~~-~f~~~~wv~~~~~~~~ 129 (800)
-.+++|+|+.|+|||||++.++...... .. ....++|+........
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4799999999999999999998754110 01 2346788876554443
No 262
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.17 E-value=0.012 Score=61.14 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS---WKSKSLEEKAQDI 159 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 159 (800)
...++.|+|++|+||||||.+++.... .....++|++....++.. .+..++...+. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~---~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ---KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH---HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 346899999999999999999988762 223468999988766644 23444432211 1234556666666
Q ss_pred HHHhc-CCceEEEEcccc
Q 041843 160 FKTLS-KKKFALLLDDLW 176 (800)
Q Consensus 160 ~~~l~-~~~~LlvlDdv~ 176 (800)
....+ ...-+||+|.+.
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 55554 345689999974
No 263
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.15 E-value=0.0057 Score=57.95 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=34.8
Q ss_pred chhHHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 66 GLQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 66 gr~~~~~~l~~~l~~~--~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.|++.++++.+.+... ....+|+|.|+.|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3667778888777642 356799999999999999999998865
No 264
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.09 E-value=0.0035 Score=64.84 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=38.8
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++|+++.++.+...+..+ ..+.++|++|+|||++|+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~---~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG---GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT---CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC---CeEEEECCCCCcHHHHHHHHHHHh
Confidence 46899999999998888765 478999999999999999999876
No 265
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.01 E-value=0.006 Score=58.12 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=31.8
Q ss_pred HHHHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 69 SQLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 69 ~~~~~l~~~l~~~-~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.+++|.+.+... +...+|+|.|+.|+|||||++.++...
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666666542 356899999999999999999998876
No 266
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.01 E-value=0.017 Score=59.21 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=41.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC---------CCC----CEEEEEEEcCccCHHHHHHHHHHHhCC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNP---------TDF----DYVIWVVVSKDLQLEKIQETIGKKIGL 142 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~---------~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~ 142 (800)
...++.|+|++|+||||+|.+++....... ... ..++|++....++..++.+. +..++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~ 168 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGI 168 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCC
Confidence 347999999999999999999987631100 111 57899998887777666543 344443
No 267
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.97 E-value=0.024 Score=60.11 Aligned_cols=52 Identities=23% Similarity=0.418 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCcc-CHHHHHHHHHH
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGK 138 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~ 138 (800)
+.++|+|++|+|||||++.+...... ...+.++++.+.+.. ...+++.++..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~--~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ--EHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH--HTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh--ccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 57899999999999999999887621 122344566665543 44555555543
No 268
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.95 E-value=0.0051 Score=66.68 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=39.0
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.++|+++.++.+...+..+ ..|.|+|++|+|||+||+++++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~---~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG---ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT---CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC---CeeEeecCchHHHHHHHHHHHHHH
Confidence 36899999999998888766 578999999999999999999876
No 269
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.86 E-value=0.085 Score=55.72 Aligned_cols=65 Identities=25% Similarity=0.377 Sum_probs=45.8
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCcc-CHHHHHHHHHHH
Q 041843 73 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKK 139 (800)
Q Consensus 73 ~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 139 (800)
+.++.+..=..-+.++|.|.+|+|||+|++++++... +.+-+.++++-+.... ...++.+++...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4455555422457999999999999999999998762 2334667777776543 566777777654
No 270
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.72 E-value=0.033 Score=56.79 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=38.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKK 139 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 139 (800)
...++.|.|.+|+||||+|.+++..... . ...++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~-~--g~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD-N--DDVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT-T--TCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-c--CCeEEEEECC--CCHHHHHHHHHHH
Confidence 3479999999999999999999877632 2 2577787755 4566666666554
No 271
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.71 E-value=0.0058 Score=56.55 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+|.|+|++|+||||+|+.+++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 689999999999999999999886
No 272
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.68 E-value=0.01 Score=62.20 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=37.3
Q ss_pred cccchhHHHHHHHHHhc-------------c-CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 63 TVVGLQSQLEQVWRCLV-------------Q-EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~-------------~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++|.+..++.+...+. . ......+.|+|++|+|||++|+++++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46899999998888772 1 1134679999999999999999999886
No 273
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.60 E-value=0.00093 Score=62.25 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++.|+|+.|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999997777665
No 274
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.58 E-value=0.077 Score=56.31 Aligned_cols=101 Identities=18% Similarity=0.239 Sum_probs=63.0
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHhCCC-------CC
Q 041843 74 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKIGLY-------TD 145 (800)
Q Consensus 74 l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~ 145 (800)
.++.|..=.+-+.++|.|.+|+|||+|+.++++... +.+.+.++++-+.... ...++.+++...-... ..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 445555533557899999999999999999998862 2345677787776544 5677777776542221 00
Q ss_pred ----CCCCCCHH------HHHHHHHHHh---cCCceEEEEcccc
Q 041843 146 ----SWKSKSLE------EKAQDIFKTL---SKKKFALLLDDLW 176 (800)
Q Consensus 146 ----~~~~~~~~------~~~~~l~~~l---~~~~~LlvlDdv~ 176 (800)
........ ...-.+-+++ +++.+|+++||+.
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 00111222 1222334444 3688999999984
No 275
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.58 E-value=0.0021 Score=74.55 Aligned_cols=149 Identities=17% Similarity=0.232 Sum_probs=82.5
Q ss_pred CcccchhHHHHHHHHHhccC------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCH
Q 041843 62 PTVVGLQSQLEQVWRCLVQE------------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 129 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~------------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 129 (800)
..++|.++..+++.+.+.-. .....+.++|++|+|||+||++++... ...|-. +..+.-.
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~---v~~~~l~-- 548 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFIS---IKGPELL-- 548 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH---TCCCCC---CCCSSST--
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh---CCCEEE---EechHhh--
Confidence 45788888888888776420 134568999999999999999999987 222211 1111100
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEccccch----------------hhhhhcCCcCC---
Q 041843 130 EKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL-SKKKFALLLDDLWER----------------VDLKKIGVPLP--- 189 (800)
Q Consensus 130 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~----------------~~~~~~~~~~~--- 189 (800)
........ .....+.+.. ...+.++++|+++.. ..+..+...+.
T Consensus 549 ---------------~~~~g~~~-~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~ 612 (806)
T 1ypw_A 549 ---------------TMWFGESE-ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp ---------------TCCTTTSS-HHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---
T ss_pred ---------------hhhcCccH-HHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc
Confidence 00011111 2222233322 235678999998531 01222222221
Q ss_pred --CCcEEEEEeCCcccccc--c---CccceEEeccCChHHHHHHHHHHhCcc
Q 041843 190 --KNSAVVFTTRFVDVCGG--M---EARRKFKVACLSDEDAWELFREKVGEE 234 (800)
Q Consensus 190 --~~s~iivTtR~~~~~~~--~---~~~~~~~l~~L~~~e~~~l~~~~~~~~ 234 (800)
.+..||.||........ . .....+.++..+.++-.++++.+....
T Consensus 613 ~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~ 664 (806)
T 1ypw_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 664 (806)
T ss_dssp ---CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC
T ss_pred ccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC
Confidence 13455666654333211 1 123467788889999999998877543
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.56 E-value=0.0067 Score=55.71 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+|+|.|+.|+||||+|+.++...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999886
No 277
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.55 E-value=0.058 Score=56.57 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=39.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC---CCCCCEEEEEEEcCccCHHHHHHHHHHHhCC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDN---PTDFDYVIWVVVSKDLQLEKIQETIGKKIGL 142 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 142 (800)
.-.++.|+|++|+|||||+..++-..... ......++|++....+....+. .+++.++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl 238 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL 238 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence 34799999999999999999876443111 1134578898877766655443 35555543
No 278
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.47 E-value=0.013 Score=54.33 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 68 QSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 68 ~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
-.-+..+..++..-+....+.|+|++|+||||+|.++++..
T Consensus 42 ~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 42 ITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 34456666666553344579999999999999999999887
No 279
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.38 E-value=0.0087 Score=56.52 Aligned_cols=25 Identities=40% Similarity=0.329 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+|+|+|+.|+||||+|+.++...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4699999999999999999999876
No 280
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.35 E-value=0.0061 Score=56.39 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.|+|+||+|+|||||++++..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999998876
No 281
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.33 E-value=0.039 Score=55.62 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=56.0
Q ss_pred HHHHHHHHHhccC-------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHH--HHHHHHHH
Q 041843 69 SQLEQVWRCLVQE-------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK--IQETIGKK 139 (800)
Q Consensus 69 ~~~~~l~~~l~~~-------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~i~~~ 139 (800)
...+++.+.+... ....+++|+|++|+||||++..++.... .....+.++.... +.... -+...++.
T Consensus 82 ~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV~lv~~D~-~r~~a~eqL~~~~~~ 157 (306)
T 1vma_A 82 SLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSVVLAAADT-FRAAAIEQLKIWGER 157 (306)
T ss_dssp HHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEEEEEcccc-ccHHHHHHHHHHHHH
Confidence 3445555555331 2457999999999999999999998873 2223455555432 22221 12334444
Q ss_pred hCCCC-CCCCCCCHHHH-HHHHHHHhcCCceEEEEccc
Q 041843 140 IGLYT-DSWKSKSLEEK-AQDIFKTLSKKKFALLLDDL 175 (800)
Q Consensus 140 l~~~~-~~~~~~~~~~~-~~~l~~~l~~~~~LlvlDdv 175 (800)
.+... ......+.... ...+...+....-++|+|-.
T Consensus 158 ~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 158 VGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTA 195 (306)
T ss_dssp HTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred cCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 44321 11112233332 23444445555568888876
No 282
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.28 E-value=0.015 Score=61.15 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=36.8
Q ss_pred CcccchhHHHHHHHHHhcc-----------------------------CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-----------------------------EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-----------------------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++|.++.++.+...+.. ......+.|+|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3578998888888776620 1124578999999999999999999886
No 283
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.27 E-value=0.01 Score=54.89 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 041843 85 GIIGLYGMGGVGKTTLLTQINN 106 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~ 106 (800)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 284
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.26 E-value=0.018 Score=54.35 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+|.|.|++|+||+|.|+.+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999887
No 285
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.23 E-value=0.0069 Score=62.62 Aligned_cols=112 Identities=11% Similarity=0.126 Sum_probs=61.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
..+++|+|+.|+||||+++.+....... .-..++.+.-.-.+..... ..+..+.. ...........+...|
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~-~~~v~q~~------~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESK-KCLVNQRE------VHRDTLGFSEALRSAL 193 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEE------BTTTBSCHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhcc-ccceeeee------eccccCCHHHHHHHHh
Confidence 3599999999999999999998776211 1122222221111100000 00000000 0001112334677888
Q ss_pred cCCceEEEEccccchhhhhhcCCcCCCCcEEEEEeCCcccc
Q 041843 164 SKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVC 204 (800)
Q Consensus 164 ~~~~~LlvlDdv~~~~~~~~~~~~~~~~s~iivTtR~~~~~ 204 (800)
...+=+|++|++.+.+.++.+......|..|++|+-....+
T Consensus 194 ~~~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSHH
T ss_pred hhCcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChHH
Confidence 88999999999987665554333323377788888765543
No 286
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.23 E-value=0.018 Score=57.70 Aligned_cols=27 Identities=30% Similarity=0.264 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 82 PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 82 ~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+...+|+|+|+.|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998876
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.23 E-value=0.011 Score=55.15 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+.|+|+|+.|+||||+|+.++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 288
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.21 E-value=0.011 Score=55.39 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+++|.|+.|+||||+++.++...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc
Confidence 4789999999999999999997763
No 289
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.21 E-value=0.1 Score=53.08 Aligned_cols=56 Identities=23% Similarity=0.222 Sum_probs=35.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc-cCHHHHHHHHHHHhC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIG 141 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~ 141 (800)
...+++|+|+.|+||||+++.++..... .-..+.++..... ....+-.....+.++
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~---~~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN---HGFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---cCCEEEEEeecccccchHHHHHHHHHHcC
Confidence 4679999999999999999999887722 2223444443321 223333444455554
No 290
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.18 E-value=0.018 Score=57.83 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998875
No 291
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.16 E-value=0.012 Score=54.45 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998865
No 292
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.15 E-value=0.013 Score=55.39 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|+|+.|+||||+|+.++...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999999887
No 293
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.15 E-value=0.0093 Score=54.80 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+|+|+|+.|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 294
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.14 E-value=0.057 Score=54.23 Aligned_cols=87 Identities=16% Similarity=0.149 Sum_probs=47.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc-cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFK 161 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 161 (800)
...+++|+|++|+||||++..++...... ....+..+..... ....+.+....+..+.... ...+..+....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLE--KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh--cCCEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 45799999999999999999998877211 2234555554332 2233333333333333211 1123333333333
Q ss_pred HhcCCceEEEEccc
Q 041843 162 TLSKKKFALLLDDL 175 (800)
Q Consensus 162 ~l~~~~~LlvlDdv 175 (800)
.+ ...=++|+|-.
T Consensus 179 ~~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 LF-SEYDHVFVDTA 191 (296)
T ss_dssp HG-GGSSEEEEECC
T ss_pred Hh-cCCCEEEEeCC
Confidence 34 44557888854
No 295
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.10 E-value=0.045 Score=56.54 Aligned_cols=49 Identities=24% Similarity=0.398 Sum_probs=33.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCC---CCEEEEEEEcCccCHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD---FDYVIWVVVSKDLQLEK 131 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~ 131 (800)
...++.|+|+.|+|||||+..++......... -..++|++....+....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 45899999999999999999998875111111 13458888766544333
No 296
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.08 E-value=0.0081 Score=61.32 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=29.6
Q ss_pred HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 72 EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 72 ~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
-++++.+..=+.-+.++|.|.+|+|||+|++++++..
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 4556666653355789999999999999999998875
No 297
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.08 E-value=0.013 Score=54.95 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|.|.|+.|+||||+|+.++...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34789999999999999999998876
No 298
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.06 E-value=0.014 Score=55.62 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35799999999999999999998876
No 299
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.06 E-value=0.01 Score=56.19 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+|+|.|+.|+||||+|+.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 300
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.00 E-value=0.0096 Score=62.04 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=34.8
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++|.+...+.+....... ...-+.|+|++|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~-~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP-GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG-GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCC-CCceEEEECCCCccHHHHHHHHHHhC
Confidence 46899988766654444332 23459999999999999999999876
No 301
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.99 E-value=0.024 Score=57.73 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=33.4
Q ss_pred cchhHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 65 VGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 65 vgr~~~~~~l~~~l~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
|+-+...+++.+.+.. .+....|.|+|+.|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4556666667666532 3356679999999999999999998875
No 302
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.98 E-value=0.1 Score=55.17 Aligned_cols=39 Identities=28% Similarity=0.173 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS 124 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 124 (800)
...+|.++|++|+||||++..++.... .....+..+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~---~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK---KRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH---HTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEecC
Confidence 368999999999999999999998873 222345555543
No 303
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.96 E-value=0.14 Score=54.04 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+.+|.++|++|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999887
No 304
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.96 E-value=0.012 Score=54.54 Aligned_cols=25 Identities=44% Similarity=0.408 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++|.|+|+.|+||||+|+.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999876
No 305
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.95 E-value=0.067 Score=56.40 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=47.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHH--HHHHHHHHhCCCCC-CCCCCCHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK--IQETIGKKIGLYTD-SWKSKSLEEKAQDI 159 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~i~~~l~~~~~-~~~~~~~~~~~~~l 159 (800)
...+++|+|++|+||||++..++.... .....+..++.. ...... .+.......+...- .....+..+.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~~Vllvd~D-~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~ 172 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV 172 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEeecc-ccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHH
Confidence 357999999999999999999998872 223345555543 233222 12334444443210 01123444443444
Q ss_pred HHHhcCCce-EEEEccc
Q 041843 160 FKTLSKKKF-ALLLDDL 175 (800)
Q Consensus 160 ~~~l~~~~~-LlvlDdv 175 (800)
.+.++...+ ++|+|-.
T Consensus 173 l~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 173 EEKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHHTTCSEEEEECC
T ss_pred HHHHHHCCCCEEEEcCC
Confidence 444432233 6667754
No 306
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.94 E-value=0.016 Score=53.93 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNK 107 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~ 107 (800)
....|+|+|+.|+||||+|+.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999887
No 307
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.94 E-value=0.013 Score=54.90 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+|+|.|+.|+||||+|+.+++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999987
No 308
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.92 E-value=0.015 Score=54.91 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|.|+.|+||||+++.++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999999998875
No 309
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.91 E-value=0.014 Score=53.22 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|.|+.|+||||+|+.++...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999876
No 310
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.91 E-value=0.025 Score=57.24 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=32.4
Q ss_pred ccchhHHHHHHHHHhccC---CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 64 VVGLQSQLEQVWRCLVQE---PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 64 ~vgr~~~~~~l~~~l~~~---~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
++|....+..+...+... +.+.+|+|.|+.|+||||+|+.+....
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344445555555544432 345699999999999999999998776
No 311
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.89 E-value=0.014 Score=54.66 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+|+|.|+.|+||||+|+.++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 312
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.88 E-value=0.018 Score=53.03 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+++|+|+.|+||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4789999999999999999998765
No 313
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.86 E-value=0.013 Score=55.49 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++|+|+|+.|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35789999999999999999998876
No 314
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.86 E-value=0.05 Score=67.93 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KSKSLEEKAQDI 159 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 159 (800)
..+.|.|+|++|+|||+||.+++... ......+.|+++...++... ++.++...+.. .....++..+.+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea---~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 45899999999999999999998887 33455788888888776665 33444221111 222334555555
Q ss_pred HHHhc-CCceEEEEcccc
Q 041843 160 FKTLS-KKKFALLLDDLW 176 (800)
Q Consensus 160 ~~~l~-~~~~LlvlDdv~ 176 (800)
.+..+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 54443 567899999984
No 315
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.85 E-value=0.018 Score=54.56 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|.|+.|+||||+|+.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46799999999999999999998875
No 316
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.81 E-value=0.016 Score=54.46 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|.|+.|+||||+|+.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34799999999999999999998876
No 317
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.80 E-value=0.032 Score=53.11 Aligned_cols=25 Identities=24% Similarity=0.439 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...|+|.|+.|+||||+|+.+++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999987
No 318
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.78 E-value=0.028 Score=54.18 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 68 QSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 68 ~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
++..+++...+... ...+|+|+|.+|+|||||+..+....
T Consensus 23 ~~~a~~~r~~~~~~-~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKH-GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33444555544433 57899999999999999999998875
No 319
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.77 E-value=0.013 Score=53.97 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.|+|.|++|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999886
No 320
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.77 E-value=0.016 Score=57.08 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+++|.|+.|+||||+|++++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 578999999999999999999876
No 321
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.77 E-value=0.018 Score=54.57 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 322
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.72 E-value=0.019 Score=53.52 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++++|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 35799999999999999999998775
No 323
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.70 E-value=0.02 Score=53.27 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|.|+.|+||||+++.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999886
No 324
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.70 E-value=0.02 Score=54.44 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++|.|.|++|+||||.|+.+++.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999887
No 325
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.70 E-value=0.032 Score=54.43 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 69 SQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 69 ~~~~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+.++.+.... ......|+|.|++|+||||+|+.+++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 344444433322 2256789999999999999999998876
No 326
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.69 E-value=0.018 Score=54.05 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+|+|.|+.|+||||+|+.++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 327
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.66 E-value=0.023 Score=55.95 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|.|.|++|+||||+|+.++...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998876
No 328
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.64 E-value=0.016 Score=54.06 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
++++|.|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998775
No 329
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.63 E-value=0.02 Score=54.27 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+++|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998775
No 330
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.60 E-value=0.015 Score=54.14 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
++|+|+|++|+||||+|+.++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999998876
No 331
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.58 E-value=0.019 Score=52.82 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998775
No 332
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.58 E-value=0.084 Score=53.80 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=37.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKK 139 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 139 (800)
..++.|.|.+|+||||+|..++..... .-..++|++. ..+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC--CCCHHHHHHHHHHH
Confidence 479999999999999999999888732 3356777665 44566666665544
No 333
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.58 E-value=0.072 Score=53.49 Aligned_cols=89 Identities=19% Similarity=0.126 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccC-HHHHHHHHHHHhCCCC-CCCCCCCHHHHHHHHHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ-LEKIQETIGKKIGLYT-DSWKSKSLEEKAQDIFK 161 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~l~~ 161 (800)
..+++++|++|+||||++..++.... .....+.+++...... ..+.+.......+... ......+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 56999999999999999999988873 2233466666543222 2222333444444321 01122345555544555
Q ss_pred Hhc-CCceEEEEccc
Q 041843 162 TLS-KKKFALLLDDL 175 (800)
Q Consensus 162 ~l~-~~~~LlvlDdv 175 (800)
.++ +.-=++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 554 33337788875
No 334
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.58 E-value=0.018 Score=54.49 Aligned_cols=23 Identities=35% Similarity=0.687 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.|+|.|+.|+||||+|+.+++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999887
No 335
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.55 E-value=0.022 Score=53.81 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNK 107 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~ 107 (800)
...+|+|+|+.|+||||+|+.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4679999999999999999999764
No 336
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.55 E-value=0.021 Score=56.45 Aligned_cols=26 Identities=31% Similarity=0.453 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|.|.|++|+||||+|+.++...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999874
No 337
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.55 E-value=0.02 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNK 107 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~ 107 (800)
.+++|.|+.|+||||+++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999764
No 338
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.55 E-value=0.021 Score=54.44 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|+|+.|+|||||++.++...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998875
No 339
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.55 E-value=0.014 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+|+|.|+.|+||||+|+.+++..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998876
No 340
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.52 E-value=0.089 Score=52.85 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=49.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH-HHHHHHHHHhCCCCCC-CCCCCHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE-KIQETIGKKIGLYTDS-WKSKSLEEKAQDIF 160 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 160 (800)
...+++|+|.+|+||||++..++.... .....+.++......... ..+..+....+...-. ....+..+......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 357999999999999999999998873 222345555543222111 1122334444432110 01234444443333
Q ss_pred HHh-cCCceEEEEccc
Q 041843 161 KTL-SKKKFALLLDDL 175 (800)
Q Consensus 161 ~~l-~~~~~LlvlDdv 175 (800)
..+ ....=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 333 244557888976
No 341
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.51 E-value=0.045 Score=61.43 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=39.0
Q ss_pred CcccchhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++|.+..++.+...+..+ ..+.|+|+.|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g---~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK---RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC---CEEEEEeCCCCCHHHHHHHHhccC
Confidence 45899999998888888766 589999999999999999999986
No 342
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.51 E-value=0.027 Score=54.09 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 66 GLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 66 gr~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.++..+++...+... ..++|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~-~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRES-GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHH-TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc-CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4445555555555444 57899999999999999999998875
No 343
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.51 E-value=0.22 Score=52.84 Aligned_cols=104 Identities=18% Similarity=0.168 Sum_probs=54.9
Q ss_pred HHHHHHHHhccC--------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHh
Q 041843 70 QLEQVWRCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKI 140 (800)
Q Consensus 70 ~~~~l~~~l~~~--------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l 140 (800)
..+++.+.+... ...++|.++|.+|+||||+|..++..... . +...+.-+++.... ...+.+.......
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~-~-~G~kVllvd~D~~r~~a~~ql~~~~~~~ 155 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLRE-K-HKKKVLVVSADVYRPAAIKQLETLAEQV 155 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHH-T-SCCCEEEEECCCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-h-cCCeEEEEecCCCCccHHHHHHhhcccC
Confidence 345555555421 24679999999999999999999988732 1 13445556654322 2222222333333
Q ss_pred CCCC-CCCCCCCHHHHHHHHHHHhc-CCceEEEEccc
Q 041843 141 GLYT-DSWKSKSLEEKAQDIFKTLS-KKKFALLLDDL 175 (800)
Q Consensus 141 ~~~~-~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv 175 (800)
+... ......+..+........+. ..-=++|+|-.
T Consensus 156 ~l~v~~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 156 GVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTA 192 (433)
T ss_dssp TCEECCCCSSSCHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CeeEEeCCCCCCHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3221 00112344444444444443 22236677775
No 344
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.50 E-value=0.021 Score=53.14 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...|+|.|+.|+||||+|+.+++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998875
No 345
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.50 E-value=0.02 Score=53.92 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+|+|.|+.|+||||+|+.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 346
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.50 E-value=0.02 Score=55.33 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+|+|+|+.|+||||+|+.++...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998875
No 347
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.49 E-value=0.022 Score=54.11 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|+|+.|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999997764
No 348
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.48 E-value=0.022 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
....|+|+|+.|+||||+|+.++...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998876
No 349
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.47 E-value=0.028 Score=59.41 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=37.0
Q ss_pred CcccchhHHHHHHHHHhcc-------------CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQ-------------EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~-------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++|.++..+.+...+.. ....+-+.++|++|+||||+|++++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578988888888766522 0134679999999999999999999987
No 350
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.46 E-value=0.21 Score=53.09 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=56.8
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHH-HHHhhcccCCCCCC-EEEEEEEcCc-cCHHHHHHHHHHHhCCCCC----
Q 041843 73 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLT-QINNKFVDNPTDFD-YVIWVVVSKD-LQLEKIQETIGKKIGLYTD---- 145 (800)
Q Consensus 73 ~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~-~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---- 145 (800)
+.++.+..=.+-+.++|.|.+|+|||+||. .+++.. +-+ .++++-+.+. ....++.+++...-.....
T Consensus 151 raID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ 225 (502)
T 2qe7_A 151 KAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT 225 (502)
T ss_dssp HHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred eecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence 345555553345789999999999999964 666654 234 3466666654 3566677777653222110
Q ss_pred CCCCCCHHHH------HHHHHHHh--cCCceEEEEcccc
Q 041843 146 SWKSKSLEEK------AQDIFKTL--SKKKFALLLDDLW 176 (800)
Q Consensus 146 ~~~~~~~~~~------~~~l~~~l--~~~~~LlvlDdv~ 176 (800)
.........+ .-.+-+++ +++.+|+++||+.
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 226 ASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 0011222211 11222333 5789999999984
No 351
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.46 E-value=0.018 Score=52.85 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
++|+|.|+.|+||||+|+.++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 352
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.43 E-value=0.035 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999886
No 353
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.43 E-value=0.02 Score=52.38 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQIN 105 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~ 105 (800)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4799999999999999999643
No 354
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.37 E-value=0.046 Score=47.22 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=12.5
Q ss_pred CcEEEccCcccccccccc-ccccccccEEeccCC
Q 041843 467 LTVLKMSDNIMLRQLPTG-ISKLVSLQLLDISYT 499 (800)
Q Consensus 467 L~~L~Ls~~~~~~~lp~~-i~~L~~L~~L~L~~~ 499 (800)
|++|+|++| .+..+|.. +..+++|++|+|++|
T Consensus 33 l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGN-NLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence 444444444 33333322 233444444444443
No 355
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.37 E-value=0.021 Score=54.03 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 041843 85 GIIGLYGMGGVGKTTLLTQINN 106 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~ 106 (800)
.+|+|+|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 356
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.36 E-value=0.023 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.|+|.|+.|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 357
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.33 E-value=0.024 Score=53.00 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+|+|.|+.|+||||+|+.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 358
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.29 E-value=0.026 Score=55.45 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|.|+.|+||||+|+.++...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998865
No 359
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.29 E-value=0.026 Score=52.63 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|+|+.|+||||+|+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998874
No 360
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.28 E-value=0.02 Score=53.92 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 361
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.28 E-value=0.024 Score=54.79 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...|+|.|+.|+||||+|+.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 362
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.26 E-value=0.025 Score=55.45 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+|+|.|+.|+||||+++.+++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999999765
No 363
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.25 E-value=0.024 Score=53.73 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 041843 85 GIIGLYGMGGVGKTTLLTQINN 106 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~ 106 (800)
.+|+|+|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999966
No 364
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.23 E-value=0.03 Score=50.69 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++++|.|+.|+||||++..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999998876
No 365
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.22 E-value=0.026 Score=53.86 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+|+|.|+.|+||||+|+.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 366
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.22 E-value=0.064 Score=46.28 Aligned_cols=53 Identities=21% Similarity=0.341 Sum_probs=43.2
Q ss_pred EEEccccccC--CCCCCCCCCcceEEEeecCCCcccccccccCCCCCcEEEccCcc
Q 041843 423 RLSLMKNSIG--NLPTVPTCPHLLTLFLNDNPLRTITGGFFQSMPCLTVLKMSDNI 476 (800)
Q Consensus 423 ~l~l~~~~~~--~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 476 (800)
.++-+++.+. .+|.. --++|+.|+|++|.++.+++.+|..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5666777776 67632 12469999999999999999999999999999999993
No 367
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.21 E-value=0.025 Score=53.02 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+|+|.|+.|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 368
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.17 E-value=0.03 Score=54.78 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|.|+.|+|||||++.++...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998764
No 369
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.17 E-value=0.027 Score=53.62 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+|+|.|+.|+||||+|+.+++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 370
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.17 E-value=0.34 Score=51.37 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=56.4
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHhCCCCC----CC
Q 041843 74 VWRCLVQEPAAGIIGLYGMGGVGKTTLL-TQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKIGLYTD----SW 147 (800)
Q Consensus 74 l~~~l~~~~~~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~----~~ 147 (800)
.++.+..=.+-+.++|.|.+|+|||+|| ..+++.. ..-..++++-+.+.. ...++.+++...-.+... ..
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 3455554234578999999999999996 4565543 222345677776543 566777776554222110 00
Q ss_pred CCCCHHH----------HHHHHHHHhcCCceEEEEcccc
Q 041843 148 KSKSLEE----------KAQDIFKTLSKKKFALLLDDLW 176 (800)
Q Consensus 148 ~~~~~~~----------~~~~l~~~l~~~~~LlvlDdv~ 176 (800)
....... .++.+++ +++.+|+++||+.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChH
Confidence 1122221 1223332 5899999999984
No 371
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.16 E-value=0.06 Score=54.70 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS 124 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 124 (800)
...+++|+|++|+||||++..++.... .....+.++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA---ELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCC
Confidence 457999999999999999999988873 223345555543
No 372
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.14 E-value=0.027 Score=54.01 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...|+|.|+.|+||||+|+.++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999886
No 373
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.14 E-value=0.07 Score=54.58 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTLS 164 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 164 (800)
.+++|+|+.|+|||||++.+..... . -...+.+.-........ ....+.... . .-......+...+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~---~-~~g~i~i~~~~e~~~~~----~~~~i~~~~----g-gg~~~r~~la~aL~ 238 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP---K-EERIISIEDTEEIVFKH----HKNYTQLFF----G-GNITSADCLKSCLR 238 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC---T-TSCEEEEESSCCCCCSS----CSSEEEEEC----B-TTBCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---C-CCcEEEECCeecccccc----chhEEEEEe----C-CChhHHHHHHHHhh
Confidence 6899999999999999999988762 1 23445544221111000 000000000 0 11223345666777
Q ss_pred CCceEEEEccccchhhhhhcCCcCCCCc-EEEEEeC
Q 041843 165 KKKFALLLDDLWERVDLKKIGVPLPKNS-AVVFTTR 199 (800)
Q Consensus 165 ~~~~LlvlDdv~~~~~~~~~~~~~~~~s-~iivTtR 199 (800)
.++=++++|++.+.+.++.+ ..+..|. .+|+||-
T Consensus 239 ~~p~ilildE~~~~e~~~~l-~~~~~g~~tvi~t~H 273 (330)
T 2pt7_A 239 MRPDRIILGELRSSEAYDFY-NVLCSGHKGTLTTLH 273 (330)
T ss_dssp SCCSEEEECCCCSTHHHHHH-HHHHTTCCCEEEEEE
T ss_pred hCCCEEEEcCCChHHHHHHH-HHHhcCCCEEEEEEc
Confidence 88889999998765444433 2222333 3566654
No 374
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.10 E-value=0.032 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...|+|.|+.|+||||+++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998875
No 375
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.07 E-value=0.035 Score=49.83 Aligned_cols=26 Identities=35% Similarity=0.309 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|.|+.|+|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34799999999999999999998875
No 376
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.06 E-value=0.025 Score=54.45 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
....|+|.|+.|+||||+|+.+++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999999887
No 377
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.05 E-value=0.031 Score=54.87 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|.|+.|+||||+++.++...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999999776
No 378
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.04 E-value=0.028 Score=53.80 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 379
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.02 E-value=0.029 Score=53.62 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998875
No 380
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.94 E-value=0.34 Score=52.32 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 123 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 123 (800)
..++|.|+|.+|+||||++..++.... .....+..|+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~---~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ---RKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEec
Confidence 467999999999999999999998772 22234555555
No 381
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.91 E-value=0.034 Score=53.10 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34799999999999999999998876
No 382
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.91 E-value=0.014 Score=60.92 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCC-C--CCCCCHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTD-S--WKSKSLEEKAQDI 159 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~--~~~~~~~~~~~~l 159 (800)
...+++|+|+.|+||||+++.+....... . -..+.++.. +... ........... . ..... ....+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~-~g~I~~~e~--~~e~-----~~~~~~~~v~Q~~~g~~~~~---~~~~l 202 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQT-K-SYHIITIED--PIEY-----VFKHKKSIVNQREVGEDTKS---FADAL 202 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHH-S-CCEEEEEES--SCCS-----CCCCSSSEEEEEEBTTTBSC---SHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcC-C-CcEEEEecc--cHhh-----hhccCceEEEeeecCCCHHH---HHHHH
Confidence 34799999999999999999998876211 0 122333331 1110 00000000000 0 01111 23456
Q ss_pred HHHhcCCceEEEEccccchhhhhhcCCcCCCCcEEEEEeCC
Q 041843 160 FKTLSKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRF 200 (800)
Q Consensus 160 ~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~s~iivTtR~ 200 (800)
...+...+=+|++|++.+.+.+.........|..|+.|+-.
T Consensus 203 ~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~ 243 (372)
T 2ewv_A 203 RAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHT 243 (372)
T ss_dssp HHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCC
T ss_pred HHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECc
Confidence 67777778899999997665544332222346667666654
No 383
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.89 E-value=0.082 Score=55.47 Aligned_cols=102 Identities=11% Similarity=0.128 Sum_probs=57.4
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC--------CCCC-EEEEEEEcC-ccCHHHHHHHHHHHhCCC
Q 041843 74 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP--------TDFD-YVIWVVVSK-DLQLEKIQETIGKKIGLY 143 (800)
Q Consensus 74 l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~--------~~f~-~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 143 (800)
.++.+..=.+-+.++|.|.+|+|||+|+.++++.. ... ++-+ .++++-+.+ .....++.+++...-...
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~ 215 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALS 215 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccccc
Confidence 34445442244678999999999999999998886 221 1111 556666654 445666777665431111
Q ss_pred -----CCCCCCCCHHHH-----HHHHHHHh---cCCceEEEEcccc
Q 041843 144 -----TDSWKSKSLEEK-----AQDIFKTL---SKKKFALLLDDLW 176 (800)
Q Consensus 144 -----~~~~~~~~~~~~-----~~~l~~~l---~~~~~LlvlDdv~ 176 (800)
....+....... .-.+.+++ .++.+|+++||+.
T Consensus 216 rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 216 RSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp GEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 000111111111 12233444 3789999999984
No 384
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.88 E-value=0.033 Score=52.80 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+++|.|+.|+|||||++.+....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4799999999999999999998876
No 385
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.87 E-value=0.036 Score=56.16 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|.|+.|+|||||++.+..-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 56799999999999999999998876
No 386
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.86 E-value=0.029 Score=53.70 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998865
No 387
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.83 E-value=0.29 Score=61.33 Aligned_cols=86 Identities=19% Similarity=0.183 Sum_probs=58.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KSKSLEEKAQDI 159 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 159 (800)
...++.|+|++|+||||||.+++.... .....++|++.....+... ++.++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 347999999999999999999998873 2335788988887776542 45555432211 234556665555
Q ss_pred HHHh-cCCceEEEEcccc
Q 041843 160 FKTL-SKKKFALLLDDLW 176 (800)
Q Consensus 160 ~~~l-~~~~~LlvlDdv~ 176 (800)
.... ....-+||+|-+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCcEEEECCHH
Confidence 5444 3456799999984
No 388
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.79 E-value=0.05 Score=51.05 Aligned_cols=111 Identities=16% Similarity=0.065 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKT 162 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 162 (800)
...+..++|+-|.||||.|...+.+.. .....++.+....+ .+.-...+...++...+........ .+.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~---~~g~kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~ 97 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ---FAKQHAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKH 97 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEECC-------------------CCEEECSSGG----GGGGG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH---HCCCEEEEEEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHH
Confidence 347889999999999999998888872 22233333332211 1111223343333322111111111 23333
Q ss_pred hcCCceEEEEccccc--hhhhhhcCCcCCCCcEEEEEeCCcc
Q 041843 163 LSKKKFALLLDDLWE--RVDLKKIGVPLPKNSAVVFTTRFVD 202 (800)
Q Consensus 163 l~~~~~LlvlDdv~~--~~~~~~~~~~~~~~s~iivTtR~~~ 202 (800)
+.++--+|++|.+.- .++++.+......+..||+|-++..
T Consensus 98 ~~~~~dvViIDEaQF~~~~~V~~l~~l~~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 98 ITEEMDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQD 139 (214)
T ss_dssp CCSSCCEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEECSBC
T ss_pred HhcCCCEEEEECcccCCHHHHHHHHHHhhCCCEEEEEecccc
Confidence 333334999999853 3444333221224789999998544
No 389
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.75 E-value=0.04 Score=50.78 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|+|+.|+||||+++.++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998875
No 390
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.75 E-value=0.19 Score=53.37 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=55.3
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHH-HHHhhcccCCCCCC-EEEEEEEcCc-cCHHHHHHHHHHHhCCCC----CC
Q 041843 74 VWRCLVQEPAAGIIGLYGMGGVGKTTLLT-QINNKFVDNPTDFD-YVIWVVVSKD-LQLEKIQETIGKKIGLYT----DS 146 (800)
Q Consensus 74 l~~~l~~~~~~~vv~I~G~~GiGKTtLa~-~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~----~~ 146 (800)
.++.+..=..-+.++|.|.+|+|||+||. .+++.. .-+ .++++-+.+. ....++.+.+...-.+.. ..
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 34555542245789999999999999965 666654 234 3466666654 356666766665321110 00
Q ss_pred CCCCCHHHH------HHHHHHHh--cCCceEEEEcccc
Q 041843 147 WKSKSLEEK------AQDIFKTL--SKKKFALLLDDLW 176 (800)
Q Consensus 147 ~~~~~~~~~------~~~l~~~l--~~~~~LlvlDdv~ 176 (800)
........+ .-.+-+++ +++.+|+++||+.
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 011222111 11222333 5789999999984
No 391
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.74 E-value=0.22 Score=53.09 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|+.|+||||+++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45799999999999999999998876
No 392
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.73 E-value=0.15 Score=53.46 Aligned_cols=100 Identities=11% Similarity=0.056 Sum_probs=58.1
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC----EEEEEEEcC-ccCHHHHHHHHHHHhCCCC----
Q 041843 74 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD----YVIWVVVSK-DLQLEKIQETIGKKIGLYT---- 144 (800)
Q Consensus 74 l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~----~~~wv~~~~-~~~~~~~~~~i~~~l~~~~---- 144 (800)
.++.+..=..-+.++|.|.+|+|||+|+.++++.. . .+.+ .++++-+.+ .....++.+++...-....
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~--~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV 217 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQA-T--VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMF 217 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-B--CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHH-H--hccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEE
Confidence 34444442234678999999999999999999886 2 2222 556666654 4456777777655321110
Q ss_pred CCCCCCCHHHHH------HHHHHHh---cCCceEEEEcccc
Q 041843 145 DSWKSKSLEEKA------QDIFKTL---SKKKFALLLDDLW 176 (800)
Q Consensus 145 ~~~~~~~~~~~~------~~l~~~l---~~~~~LlvlDdv~ 176 (800)
..........+. -.+.+++ .++.+|+++||+.
T Consensus 218 ~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 218 MNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 000122222221 2233444 3789999999984
No 393
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.72 E-value=0.046 Score=55.10 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|+.|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 394
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.68 E-value=0.041 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|.|+.|+||||+|+.++...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998876
No 395
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.65 E-value=0.31 Score=51.94 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=56.8
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHH-HHHHhhccc---CCCCCC-EEEEEEEcCc-cCHHHHHHHHHHHhCCCC---
Q 041843 74 VWRCLVQEPAAGIIGLYGMGGVGKTTLL-TQINNKFVD---NPTDFD-YVIWVVVSKD-LQLEKIQETIGKKIGLYT--- 144 (800)
Q Consensus 74 l~~~l~~~~~~~vv~I~G~~GiGKTtLa-~~~~~~~~~---~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~--- 144 (800)
.++.+..=..-+.++|.|.+|+|||+|| ..+++.... ...+-+ .++++-+.+. ....++.+.+...-.+..
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 4455555334578999999999999995 466665510 001223 4666667654 356667777665322110
Q ss_pred -CCCCCCCHHHHH------HHHHHHh--cCCceEEEEcccc
Q 041843 145 -DSWKSKSLEEKA------QDIFKTL--SKKKFALLLDDLW 176 (800)
Q Consensus 145 -~~~~~~~~~~~~------~~l~~~l--~~~~~LlvlDdv~ 176 (800)
..........+. -.+-+++ +++.+|+++||+.
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 000112221111 1222333 5789999999984
No 396
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.65 E-value=0.038 Score=53.07 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+|+|.|++|+||||+|+.++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.64 E-value=0.044 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINN 106 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~ 106 (800)
..+|+|.|+.|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 398
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.63 E-value=0.039 Score=55.17 Aligned_cols=24 Identities=29% Similarity=0.657 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINN 106 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~ 106 (800)
...+|+|+|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 399
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.61 E-value=0.072 Score=51.94 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=29.3
Q ss_pred HHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 71 LEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 71 ~~~l~~~l~~~-~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+..++... +....+.|+|++|+|||.+|.++++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34455566554 345689999999999999999999864
No 400
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.61 E-value=0.055 Score=54.81 Aligned_cols=40 Identities=25% Similarity=0.428 Sum_probs=31.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 125 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 125 (800)
..+||+|+|-|||||||.|..++.-.+ .....+.-|++..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA---~~GkkVllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFS---ILGKRVLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHH---HCCCeEEEEecCC
Confidence 579999999999999999998888773 2334567777663
No 401
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.60 E-value=0.073 Score=53.99 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|.|+.|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998875
No 402
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.55 E-value=0.097 Score=57.99 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+++.|+|++|+||||++..+....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998876
No 403
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.54 E-value=0.064 Score=49.77 Aligned_cols=116 Identities=11% Similarity=0.052 Sum_probs=57.9
Q ss_pred CCCCCcEEEccCccccc-----cccccccccccccEEeccCCCCcc-----cchhhhcCccCceeccccccccc----cc
Q 041843 463 SMPCLTVLKMSDNIMLR-----QLPTGISKLVSLQLLDISYTSVTG-----LPEGLKALVNLKCLNLDWADELV----EV 528 (800)
Q Consensus 463 ~l~~L~~L~Ls~~~~~~-----~lp~~i~~L~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~----~l 528 (800)
+-+.|+.|+|+++..+. .+-+.+..-..|+.|+|++|.|.. +-..+..-+.|++|+|++|..-. .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 34455666665531221 123334445566666666666654 33344455666666666554211 11
Q ss_pred chhhhCCCCCCcEEEeeecCC--CCCCcccccccchHHHhhCCCCCcEEEEEeccch
Q 041843 529 PQQLLSNFSRLRVLRMFATGV--GSYGRFSSRYVNVAEELLGLKYLEVLEITFRSFE 583 (800)
Q Consensus 529 p~~~~~~L~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 583 (800)
-.. +..=+.|++|++.++.. .+.. ....+...+..-+.|..|+++.+...
T Consensus 119 a~a-L~~N~tL~~L~L~n~~~~~ig~~----g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 119 LRS-TLVTQSIVEFKADNQRQSVLGNQ----VEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHH-TTTTCCCSEEECCCCSSCCCCHH----HHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHH-HhhCCceeEEECCCCcCcCcCHH----HHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 111 33445577777765422 1100 00024455666677888888776643
No 404
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.50 E-value=0.047 Score=54.46 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++|+|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998876
No 405
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.48 E-value=0.072 Score=51.30 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
....|+|.|+.|+||||+++.+++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999998
No 406
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.48 E-value=0.29 Score=51.73 Aligned_cols=102 Identities=11% Similarity=0.060 Sum_probs=59.1
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCCEEEEEEEcC-ccCHHHHHHHHHHHhCCCC----CCC
Q 041843 74 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP-TDFDYVIWVVVSK-DLQLEKIQETIGKKIGLYT----DSW 147 (800)
Q Consensus 74 l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~----~~~ 147 (800)
.++.+..=..-+.++|.|.+|+|||+|+.+++......+ +.-+.++++-+.+ .....++.+++...-.+.. ...
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 345555423457788999999999999999999872111 1224566666654 4456777777765421110 000
Q ss_pred CCCCHHHH------HHHHHHHh---cCCceEEEEccc
Q 041843 148 KSKSLEEK------AQDIFKTL---SKKKFALLLDDL 175 (800)
Q Consensus 148 ~~~~~~~~------~~~l~~~l---~~~~~LlvlDdv 175 (800)
.......+ .-.+.+++ +++.+|+++||+
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11222221 12233333 479999999997
No 407
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.47 E-value=0.043 Score=55.74 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999886
No 408
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.47 E-value=0.19 Score=53.88 Aligned_cols=53 Identities=9% Similarity=-0.031 Sum_probs=37.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKK 139 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 139 (800)
...++.|.|.+|+||||+|..++..... .....++|++.. .+..++...+...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 3469999999999999999999888632 123457776654 4456666665543
No 409
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.47 E-value=0.028 Score=52.27 Aligned_cols=109 Identities=11% Similarity=0.005 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKSKSLEEKAQDIFKTL 163 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 163 (800)
.++..++|+.|.||||.+..++++.. ...... +.+....+ .+.-...+...++...+.....+.. .+.+.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~--~~g~kV-~v~k~~~d--~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~ 78 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK--IAKQKI-QVFKPEID--NRYSKEDVVSHMGEKEQAVAIKNSR----EILKYF 78 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCE-EEEEEC---------CEEECTTSCEEECEEESSST----HHHHHC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEE-EEEEeccC--ccchHHHHHhhcCCceeeEeeCCHH----HHHHHH
Confidence 47999999999999999999888872 123333 33332211 1111112222232211110111111 344444
Q ss_pred cCCceEEEEccccc--hhhhhhcCCcCCCCcEEEEEeCCc
Q 041843 164 SKKKFALLLDDLWE--RVDLKKIGVPLPKNSAVVFTTRFV 201 (800)
Q Consensus 164 ~~~~~LlvlDdv~~--~~~~~~~~~~~~~~s~iivTtR~~ 201 (800)
.+.-=+|++|.+.. ...++.+......+..||+|.++.
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDM 118 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSB
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 44334999999743 333443322122378899998854
No 410
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.46 E-value=0.021 Score=54.46 Aligned_cols=24 Identities=33% Similarity=0.679 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+|+|.|+.|+||||+|+.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998876
No 411
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.36 E-value=0.13 Score=53.34 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=29.1
Q ss_pred HHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 71 LEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 71 ~~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++.+.+.. .+...+|+|+|.+|+||||++..++...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444444442 3467899999999999999999998776
No 412
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.32 E-value=0.051 Score=54.97 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++|+|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4699999999999999999998876
No 413
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.31 E-value=0.049 Score=52.73 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...|+|.|+.|+||||+|+.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999887
No 414
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.25 E-value=0.049 Score=54.95 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
++|+|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999886
No 415
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.25 E-value=0.046 Score=51.81 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
++|+|.|+.|+||||+|+.++...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999998876
No 416
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.24 E-value=0.22 Score=53.58 Aligned_cols=59 Identities=22% Similarity=0.297 Sum_probs=41.8
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc-cCHHHHHHHH
Q 041843 73 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETI 136 (800)
Q Consensus 73 ~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 136 (800)
++++.|..=..-+.++|.|.+|+|||+|+.++++.. +-+.++++-+... ....++++++
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 345666553355899999999999999999998875 2356777777654 3455555554
No 417
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.21 E-value=0.041 Score=52.65 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...|+|.|+.|+||||+|+.++...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999886
No 418
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.10 E-value=0.057 Score=49.29 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.++++|+|+.|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998875
No 419
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.09 E-value=0.048 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.|+|.|+.|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 420
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.08 E-value=0.043 Score=53.51 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+|+|+|+.|+||||+++.++...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 689999999999999999999876
No 421
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.08 E-value=0.05 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 422
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.05 E-value=0.058 Score=53.74 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++|+|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999886
No 423
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.04 E-value=0.037 Score=53.53 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=16.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-hhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQIN-NKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~-~~~ 108 (800)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 424
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.03 E-value=0.045 Score=50.82 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+++|+|+.|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468999999999999999998876
No 425
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.01 E-value=0.17 Score=54.06 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=35.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
...++.|.|.+|+||||+|.+++..... ....++|++... +..++...+.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~---~g~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD---NDDVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH---TTCEEEEECSSS--CTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH---cCCEEEEEECCC--CHHHHHHHHH
Confidence 3469999999999999999999888732 234677766554 3334444443
No 426
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.99 E-value=0.073 Score=54.04 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=32.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 126 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 126 (800)
..++|+|+|-||+||||+|..++...++ ....++-|++...
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~---~G~~VlliD~D~~ 80 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSI---LGKRVLQIGCDPK 80 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEESSS
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHH---CCCeEEEEeCCCC
Confidence 5789999999999999999999888732 2345777776643
No 427
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.98 E-value=0.19 Score=54.04 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=35.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
...++.|.|.+|+||||+|..++..... .....++|++... +..++...+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCC--CHHHHHHHHH
Confidence 3469999999999999999999888631 1233577776543 4455555543
No 428
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.98 E-value=0.13 Score=54.73 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCcHHHHHH-HHHhhcccCCCCCC-EEEEEEEcCc-cCHHHHHHHHHHHhCCC--------CCCCCC--
Q 041843 83 AAGIIGLYGMGGVGKTTLLT-QINNKFVDNPTDFD-YVIWVVVSKD-LQLEKIQETIGKKIGLY--------TDSWKS-- 149 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~-~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~--------~~~~~~-- 149 (800)
+-+.++|.|.+|+|||+||. .+++.. . -+ .++++-+.+. ....++.+++...-.+. .++...
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ---G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC---T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh---c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 45788999999999999964 666654 2 23 4466666554 34556666655431111 000000
Q ss_pred CCH----HHHHHHHHHHhcCCceEEEEcccc
Q 041843 150 KSL----EEKAQDIFKTLSKKKFALLLDDLW 176 (800)
Q Consensus 150 ~~~----~~~~~~l~~~l~~~~~LlvlDdv~ 176 (800)
.-. -..++.+++ +++.+|+++||+.
T Consensus 237 ~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp THHHHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 001 122333443 5899999999984
No 429
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.95 E-value=0.25 Score=53.02 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=42.3
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCcc-CHHHHHHHHH
Q 041843 73 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIG 137 (800)
Q Consensus 73 ~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 137 (800)
++++.+..=..-+.++|.|.+|+|||+|++++++.. +-+.++++-+.+.. ...++.+++-
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~~ 276 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEFP 276 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHTT
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHHH
Confidence 345555542245789999999999999999998764 23577787777554 4566666653
No 430
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.94 E-value=0.057 Score=52.37 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
. .+++|.|+.|+|||||++.++.-.
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred C-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 5 899999999999999999998765
No 431
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.92 E-value=0.035 Score=50.57 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
++++|+|+.|+|||||++.+....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 432
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.92 E-value=0.13 Score=48.78 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...|+|.|+.|+||||+++.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 433
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.91 E-value=0.12 Score=52.72 Aligned_cols=46 Identities=24% Similarity=0.227 Sum_probs=34.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 131 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 131 (800)
..+++.+.|-||+||||+|..++...+ .....++-|+.....++..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~l~~ 60 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHNLSD 60 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCChhH
Confidence 568899999999999999999998883 3445677777665444433
No 434
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.91 E-value=0.053 Score=50.02 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+.|.|.|+.|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3679999999999999999998775
No 435
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.89 E-value=0.16 Score=62.56 Aligned_cols=86 Identities=19% Similarity=0.183 Sum_probs=58.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KSKSLEEKAQDI 159 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 159 (800)
..+++.|+|++|+||||||.+++.... .....++|++.....+... ++.++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---HhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 357999999999999999999988873 2345789998887776542 45555432221 234555555555
Q ss_pred HHHh-cCCceEEEEcccc
Q 041843 160 FKTL-SKKKFALLLDDLW 176 (800)
Q Consensus 160 ~~~l-~~~~~LlvlDdv~ 176 (800)
.... +.+.-+||+|-+.
T Consensus 454 ~~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHhcCCCEEEECCHH
Confidence 5444 3456799999985
No 436
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.87 E-value=0.031 Score=56.13 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998865
No 437
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.86 E-value=0.056 Score=52.81 Aligned_cols=39 Identities=23% Similarity=0.184 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 125 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 125 (800)
..++.|.|++|+||||+|.+++..... .-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 469999999999999999988776522 234577776544
No 438
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.81 E-value=0.11 Score=53.25 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=34.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHH
Q 041843 81 EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 130 (800)
Q Consensus 81 ~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 130 (800)
....+++.+.|-||+||||+|..++...+.. .....++-|+.....++.
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~-~~g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALA-QPNEQFLLISTDPAHNLS 63 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSSCHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCCCChH
Confidence 3356899999999999999999999887300 334456667765444433
No 439
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.79 E-value=0.059 Score=52.15 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34799999999999999999997765
No 440
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.79 E-value=0.066 Score=53.92 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998886
No 441
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.79 E-value=0.068 Score=50.51 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNK 107 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~ 107 (800)
.+++|.|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999875
No 442
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.77 E-value=0.29 Score=53.47 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKK 139 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 139 (800)
..++.|.|.+|+||||+|.+++..... .+-..++|++... +..++...++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~--~~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGT--AMGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTT--TSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHH--hcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 468999999999999999999988732 2234677776544 456666655443
No 443
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.76 E-value=0.12 Score=53.19 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35699999999999999999999887
No 444
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.75 E-value=0.085 Score=49.91 Aligned_cols=38 Identities=26% Similarity=0.138 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 125 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 125 (800)
-.|.+.|.||+||||+|..++.... ...+ .+..+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~--~~G~-~V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL--RQGV-RVMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH--HTTC-CEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--HCCC-CEEEEEeCC
Confidence 4588999999999999999988873 1223 344555544
No 445
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.57 E-value=0.1 Score=48.39 Aligned_cols=108 Identities=11% Similarity=0.032 Sum_probs=68.1
Q ss_pred CCCcceEEEeecC-CCccc----ccccccCCCCCcEEEccCccccc-----cccccccccccccEEeccCCCCcc-----
Q 041843 439 TCPHLLTLFLNDN-PLRTI----TGGFFQSMPCLTVLKMSDNIMLR-----QLPTGISKLVSLQLLDISYTSVTG----- 503 (800)
Q Consensus 439 ~~~~L~~L~l~~~-~l~~~----~~~~~~~l~~L~~L~Ls~~~~~~-----~lp~~i~~L~~L~~L~L~~~~i~~----- 503 (800)
+-+.|+.|+|++| .+... ....+..-..|+.|+|++| .+. .+.+.+..-..|++|+|++|.|..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 3466777787764 54321 1122556678888888888 443 233444556789999999998875
Q ss_pred cchhhhcCccCceeccccccc--ccc-----cchhhhCCCCCCcEEEeeecC
Q 041843 504 LPEGLKALVNLKCLNLDWADE--LVE-----VPQQLLSNFSRLRVLRMFATG 548 (800)
Q Consensus 504 lp~~i~~l~~L~~L~l~~~~~--l~~-----lp~~~~~~L~~L~~L~l~~~~ 548 (800)
+-..+..-+.|+.|+|++|.. ++. +.. ++..=+.|..|+++.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCC
Confidence 444566667799999985421 221 222 24556788999987654
No 446
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.53 E-value=0.056 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+++|+|+.|+|||||++.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4699999999999999999997665
No 447
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.53 E-value=0.065 Score=56.91 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998765
No 448
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.51 E-value=0.067 Score=51.80 Aligned_cols=26 Identities=23% Similarity=0.532 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34799999999999999999997765
No 449
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.47 E-value=0.11 Score=56.05 Aligned_cols=46 Identities=11% Similarity=-0.035 Sum_probs=34.0
Q ss_pred cccchhHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 63 TVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 63 ~~vgr~~~~~~l~~~l~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+.|.+..+.+.+.... .....+|.+.|+.|+||||+|++++...
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 445565555555555422 2245799999999999999999999998
No 450
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.43 E-value=0.12 Score=50.85 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...++.+.|.||+||||++..++...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999877
No 451
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.33 E-value=0.075 Score=53.76 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.+|.|.|++|+||||+|+.++...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 589999999999999999998753
No 452
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.25 E-value=0.074 Score=52.38 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|.|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44799999999999999999997765
No 453
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.20 E-value=0.067 Score=52.98 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+++|+|+.|+|||||++.++.-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4799999999999999999997754
No 454
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.17 E-value=0.13 Score=48.21 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 041843 86 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 137 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 137 (800)
.|+|-|.-|+||||.++.+++.. ......+++..-.......+..+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L---~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL---EKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---HHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 47899999999999999999988 22333344444333333444444443
No 455
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.17 E-value=0.15 Score=52.84 Aligned_cols=26 Identities=23% Similarity=0.077 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|+.|+|||||++.++...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45799999999999999999999765
No 456
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.13 E-value=0.087 Score=52.83 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|+.|+|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45799999999999999999998765
No 457
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.12 E-value=0.047 Score=60.83 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=34.7
Q ss_pred CcccchhHHHHHHHHHhccCCCce-----------EEEEEcCCCCcHHHHHHHHHhhc
Q 041843 62 PTVVGLQSQLEQVWRCLVQEPAAG-----------IIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 62 ~~~vgr~~~~~~l~~~l~~~~~~~-----------vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.++|.+...+.+...+..+ ..+ -|.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g-~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG-VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC-CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCC-CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 56889988766665544433 111 58999999999999999998775
No 458
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.10 E-value=0.079 Score=52.08 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|.|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45799999999999999999997765
No 459
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.08 E-value=0.084 Score=51.37 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|+.|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44799999999999999999997664
No 460
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.06 E-value=0.094 Score=46.97 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.|+|.|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998764
No 461
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.04 E-value=0.093 Score=50.87 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+|+|.|+.|+||||+++.++...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998875
No 462
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.02 E-value=0.1 Score=51.35 Aligned_cols=108 Identities=16% Similarity=0.199 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC-ccCHHHHHHHHHH--HhCCCCCCCCCCCHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEKIQETIGK--KIGLYTDSWKSKSLEEKAQDI 159 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~~~l 159 (800)
...+++|+|+.|+||||+++.+..... ..+...+++.-.. .+-.... ..+.. .++. ..... ...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl-----~~~~l---~~~l 91 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE-----DTKSF---ADAL 91 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT-----TBSCH---HHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC-----CHHHH---HHHH
Confidence 347999999999999999999987651 1112223222111 0000000 00000 0000 11122 3455
Q ss_pred HHHhcCCceEEEEccccchhhhhhcCCcCCCCcEEEEEeCCcc
Q 041843 160 FKTLSKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVD 202 (800)
Q Consensus 160 ~~~l~~~~~LlvlDdv~~~~~~~~~~~~~~~~s~iivTtR~~~ 202 (800)
...+...+=++++|+..+......+......|..|++||-+..
T Consensus 92 a~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 92 RAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNT 134 (261)
T ss_dssp HHHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred HHHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcch
Confidence 5666667778999998655443332222223667888887544
No 463
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.02 E-value=0.062 Score=50.97 Aligned_cols=25 Identities=36% Similarity=0.664 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+++|+|+.|+|||||++.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999997765
No 464
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.01 E-value=0.084 Score=49.21 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
.-.|+|+|+.|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998764
No 465
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.98 E-value=0.095 Score=51.00 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...|+|.|..|+||||+++.+++..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999886
No 466
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.97 E-value=0.092 Score=51.86 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNK 107 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~ 107 (800)
...+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4479999999999999999999875
No 467
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.96 E-value=0.076 Score=51.56 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+++|+|+.|+|||||++.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4699999999999999999997765
No 468
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.95 E-value=0.075 Score=52.42 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|+.|+|||||++.++.-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34799999999999999999998765
No 469
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.94 E-value=0.14 Score=50.61 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcC
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 125 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 125 (800)
++|+|.|-||+||||+|..++...+ .....++-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la---~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH---AMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH---TTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH---HCCCcEEEEcCCC
Confidence 5788899999999999999998883 2334567777654
No 470
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.93 E-value=0.084 Score=51.59 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNK 107 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~ 107 (800)
..+++|.|+.|+|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
No 471
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.93 E-value=0.077 Score=51.09 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+++|+|+.|+|||||++.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4699999999999999999998775
No 472
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.93 E-value=0.086 Score=51.64 Aligned_cols=26 Identities=42% Similarity=0.585 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|.|+.|+|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44799999999999999999997765
No 473
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.92 E-value=0.25 Score=61.02 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=63.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KSKSLEEKAQDI 159 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 159 (800)
+-++|-|+|+.|+||||||.++.... +......+|+++....+..- ++.++...+.. .+..-++.+..+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 45899999999999999999998776 45667889999888777664 66676654332 344456666666
Q ss_pred HHHhc-CCceEEEEcccc
Q 041843 160 FKTLS-KKKFALLLDDLW 176 (800)
Q Consensus 160 ~~~l~-~~~~LlvlDdv~ 176 (800)
...++ +..-+||+|-|.
T Consensus 1502 ~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHcCCCCEEEEccHH
Confidence 66665 456799999984
No 474
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.89 E-value=0.17 Score=47.02 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998764
No 475
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.87 E-value=0.17 Score=48.75 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...|+|.|+.|+||||+++.+++..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 476
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.86 E-value=0.088 Score=51.76 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|+.|+|||||++.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34799999999999999999998765
No 477
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.85 E-value=0.079 Score=52.06 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+++|+|+.|+|||||++.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4699999999999999999997765
No 478
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.85 E-value=0.3 Score=54.57 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+++.|+|++|.||||++..+....
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 799999999999999988876655
No 479
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.79 E-value=0.081 Score=51.57 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+++|+|+.|+|||||++.++.-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4699999999999999999997765
No 480
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.71 E-value=0.093 Score=51.93 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44799999999999999999997765
No 481
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.64 E-value=0.099 Score=47.30 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNK 107 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~ 107 (800)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999764
No 482
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.62 E-value=0.18 Score=49.32 Aligned_cols=42 Identities=31% Similarity=0.436 Sum_probs=31.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHH
Q 041843 87 IGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 131 (800)
Q Consensus 87 v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 131 (800)
|+|.|-||+||||+|..++...+ .....++-|+.....++..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la---~~g~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA---SDYDKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT---TTCSCEEEEEECTTSCHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCCcChHH
Confidence 56699999999999999999983 3335677777765454443
No 483
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.62 E-value=0.5 Score=45.54 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=22.2
Q ss_pred HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHH
Q 041843 72 EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQIN 105 (800)
Q Consensus 72 ~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~ 105 (800)
+++...+..+ +.+.|.|+.|+||||++..+.
T Consensus 67 ~~~i~~i~~g---~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 67 SEILEAISQN---SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHHC---SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHhcC---CEEEEEeCCCCCcHHhHHHHH
Confidence 4444444444 689999999999998766554
No 484
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.61 E-value=0.1 Score=54.15 Aligned_cols=24 Identities=42% Similarity=0.652 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
++|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 689999999999999999999886
No 485
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.60 E-value=0.1 Score=48.93 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...|+|+|+.|+|||||++.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998764
No 486
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.59 E-value=0.098 Score=51.67 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34799999999999999999997765
No 487
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.59 E-value=0.12 Score=55.68 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 67 LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 67 r~~~~~~l~~~l~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+.++.+...+..+. +.+.|.|++|+|||+++.++....
T Consensus 30 Q~~av~~~~~~i~~~~--~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK--HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHSSS--CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC--CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4445555555555542 499999999999999999998887
No 488
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.57 E-value=0.088 Score=51.31 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+++|+|+.|+|||||++.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999998776
No 489
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.44 E-value=0.15 Score=51.17 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=30.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 126 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 126 (800)
.++|+|.|-||+||||+|..++...++ ....++-|+....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~---~G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE---MGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH---CCCeEEEEecCCC
Confidence 468888999999999999999988732 2345666776543
No 490
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.41 E-value=0.088 Score=50.78 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNK 107 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~ 107 (800)
...+|+|.|+.|+||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998765
No 491
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.39 E-value=0.18 Score=47.68 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..|+|.|+.|+||||+++.+++..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999887
No 492
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.38 E-value=0.084 Score=48.82 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 041843 86 IIGLYGMGGVGKTTLLTQINNK 107 (800)
Q Consensus 86 vv~I~G~~GiGKTtLa~~~~~~ 107 (800)
.|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 493
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.36 E-value=0.19 Score=47.23 Aligned_cols=24 Identities=29% Similarity=0.582 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 85 GIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 85 ~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
+.|+|-|+-|+||||+++.+++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999988
No 494
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.35 E-value=0.094 Score=51.30 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+++|.|+.|+|||||++.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998765
No 495
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.32 E-value=0.099 Score=52.19 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..++.|+|++|+||||||..++...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999998765
No 496
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.32 E-value=0.12 Score=54.79 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
..+|.|+|++|+||||+|..++...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998876
No 497
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.31 E-value=0.096 Score=52.05 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 83 AAGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 83 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...+++|+|+.|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34699999999999999999998765
No 498
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.18 E-value=0.12 Score=52.18 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEE
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 123 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 123 (800)
..+++|.|++|+|||||++.++...... ....++|+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeC
Confidence 4799999999999999999998876321 1224556554
No 499
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.14 E-value=0.14 Score=52.32 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=32.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEEcCccCHHHH
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 132 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 132 (800)
..++...|-||+||||+|..++...+ .....++-|+.....++...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA---~~G~rVLlvD~D~~~~l~~~ 59 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMA---RSGKKTLVISTDPAHSLSDS 59 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEECCSSCCHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH---HCCCcEEEEeCCCCcCHHHH
Confidence 46777889999999999999998873 23445666666554454433
No 500
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.10 E-value=0.13 Score=49.23 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 041843 84 AGIIGLYGMGGVGKTTLLTQINNKF 108 (800)
Q Consensus 84 ~~vv~I~G~~GiGKTtLa~~~~~~~ 108 (800)
...|+|.|+.|+||||+++.+++..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
Done!