BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041844
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 31 NTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVR 90
+ ++F++SM+LK +++GI D IHNH KPMTL++L +L++HP+K LH + L
Sbjct: 17 HVYNFVSSMALKSA--MELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTH 74
Query: 91 SGFF 94
+GFF
Sbjct: 75 NGFF 78
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 31 NTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVR 90
+ ++F++SM+LK +++GI D IHNH KPMTL++L +L++HP+K LH + L
Sbjct: 16 HVYNFVSSMALKSA--MELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTH 73
Query: 91 SGFF 94
+GFF
Sbjct: 74 NGFF 77
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 31 NTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVR 90
+ ++F++SM+LK +++GI D IHNH KPMTL++L +L++HP+K LH + L
Sbjct: 13 HVYNFVSSMALKSA--MELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTH 70
Query: 91 SGFF 94
+GFF
Sbjct: 71 NGFF 74
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Query: 10 NNSSDELLQAQLLNCANPCLDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLG 69
N E+ +AQ L N ++F++SMSLK I++ IP+IIHNH KP+TL+ L+
Sbjct: 7 NRKPSEIFKAQAL-----LYKNMYAFVDSMSLKWS--IEMNIPNIIHNHGKPITLSNLVS 59
Query: 70 ALQIHPTKTRCLHFLVCSLVRSGFFNL 96
LQI TK + L+ L +GFF +
Sbjct: 60 ILQIPSTKVDNVQRLMRYLAHNGFFEI 86
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 15 ELLQAQLLNCANPCLDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIH 74
E+ +AQ L + ++FI+SMSLK +++ IP+II NH KP++L+ L+ LQ+
Sbjct: 12 EIFKAQAL-----LYKHIYAFIDSMSLKWA--VEMNIPNIIQNHGKPISLSNLVSILQVP 64
Query: 75 PTKTRCLHFLVCSLVRSGFFNL 96
+K + L+ L +GFF +
Sbjct: 65 SSKIGNVRRLMRYLAHNGFFEI 86
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine
Substituted Isoflavone O-Methyltransferase
Length = 352
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 15 ELLQAQLLNCANPCLDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIH 74
E+ +AQ L + ++FI+S SLK ++ IP+II NH KP++L+ L+ LQ+
Sbjct: 12 EIFKAQAL-----LYKHIYAFIDSXSLKWA--VEXNIPNIIQNHGKPISLSNLVSILQVP 64
Query: 75 PTKTRCLHFLVCSLVRSGFFNL 96
+K + L L +GFF +
Sbjct: 65 SSKIGNVRRLXRYLAHNGFFEI 86
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 28.9 bits (63), Expect = 0.79, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 14 DELLQAQLLNCANPCLDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKP--MTLNQLL 68
++LLQ + + + FSF+++ + + V L QV P II++ P M + LL
Sbjct: 361 NDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLL 417
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 14 DELLQAQLLNCANPCLDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKP 61
++LLQ + + FSF+++ + + V L QV P II++ P
Sbjct: 280 NDLLQLDCIGVSXAEXPVDFSFVDTTARQIVALAQVNTPQIIYHVLSP 327
>pdb|3HVW|A Chain A, Crystal Structure Of The Ggdef Domain Of The Pa2567
Protein From Pseudomonas Aeruginosa, Northeast
Structural Genomics Consortium Target Par365c
Length = 176
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 33 FSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFL 84
+ F N + L+ I+ +PD P LL Q T++ CL L
Sbjct: 50 YPFSNDLXLEARDRIRAELPDFTLYKISPTRFGLLLPRQQQEETESVCLRLL 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,720,291
Number of Sequences: 62578
Number of extensions: 87004
Number of successful extensions: 238
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 9
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)