Query 041844
Match_columns 97
No_of_seqs 134 out of 740
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 19:23:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p9c_A Caffeic acid O-methyltr 99.6 2.3E-16 7.8E-21 121.0 7.2 83 7-96 8-93 (364)
2 1zg3_A Isoflavanone 4'-O-methy 99.6 1.6E-15 5.5E-20 115.0 4.2 77 13-96 4-80 (358)
3 1fp2_A Isoflavone O-methyltran 99.6 3.8E-15 1.3E-19 112.7 6.0 81 9-96 6-86 (352)
4 3reo_A (ISO)eugenol O-methyltr 99.5 4.8E-15 1.6E-19 113.7 5.5 78 12-96 14-95 (368)
5 3dp7_A SAM-dependent methyltra 99.5 1.6E-14 5.5E-19 110.2 5.1 73 14-96 10-82 (363)
6 4a6d_A Hydroxyindole O-methylt 99.5 2.8E-14 9.6E-19 109.0 6.1 68 18-95 7-74 (353)
7 1fp1_D Isoliquiritigenin 2'-O- 99.5 4.8E-14 1.6E-18 107.5 5.0 78 12-96 15-100 (372)
8 3lst_A CALO1 methyltransferase 99.4 1.3E-13 4.3E-18 104.4 5.5 73 12-96 15-87 (348)
9 1x19_A CRTF-related protein; m 99.4 2.8E-13 9.6E-18 102.5 6.1 74 11-96 22-96 (359)
10 3gwz_A MMCR; methyltransferase 99.3 1.9E-12 6.6E-17 98.9 6.6 69 16-96 35-103 (369)
11 3i53_A O-methyltransferase; CO 99.3 1.7E-12 5.8E-17 97.1 5.6 62 28-96 9-70 (332)
12 2ip2_A Probable phenazine-spec 99.3 3.4E-12 1.2E-16 95.1 7.1 61 29-96 13-73 (334)
13 3mcz_A O-methyltransferase; ad 99.3 1.6E-12 5.5E-17 97.6 3.2 60 29-96 29-88 (352)
14 2r3s_A Uncharacterized protein 99.2 6.1E-12 2.1E-16 93.2 5.1 61 29-96 11-71 (335)
15 1qzz_A RDMB, aclacinomycin-10- 99.2 2.4E-11 8.4E-16 91.6 6.4 61 29-96 21-81 (374)
16 1tw3_A COMT, carminomycin 4-O- 99.1 5.7E-11 1.9E-15 89.3 5.1 61 29-96 24-84 (360)
17 2heo_A Z-DNA binding protein 1 97.1 0.00027 9.3E-09 42.4 2.3 45 48-95 12-56 (67)
18 3mq0_A Transcriptional repress 97.0 0.00046 1.6E-08 51.2 3.5 45 49-96 33-77 (275)
19 2fu4_A Ferric uptake regulatio 97.0 0.00042 1.5E-08 42.1 2.5 46 47-95 18-69 (83)
20 3r0a_A Putative transcriptiona 96.7 0.00094 3.2E-08 43.9 2.7 46 47-95 27-73 (123)
21 1mkm_A ICLR transcriptional re 96.7 0.0012 4.3E-08 47.8 3.6 45 49-96 11-55 (249)
22 2xrn_A HTH-type transcriptiona 96.6 0.0011 3.7E-08 48.0 2.6 44 50-96 10-53 (241)
23 3r4k_A Transcriptional regulat 96.6 0.0005 1.7E-08 50.4 0.7 44 50-96 10-53 (260)
24 1y0u_A Arsenical resistance op 96.5 0.0023 7.8E-08 39.9 3.4 44 47-96 32-75 (96)
25 2y75_A HTH-type transcriptiona 96.5 0.0023 8E-08 41.8 3.6 35 59-96 24-58 (129)
26 3pqk_A Biofilm growth-associat 96.4 0.0043 1.5E-07 38.8 4.4 44 47-95 24-67 (102)
27 2o0y_A Transcriptional regulat 96.3 0.0014 4.8E-08 47.9 2.0 44 50-96 27-70 (260)
28 1xn7_A Hypothetical protein YH 96.3 0.0041 1.4E-07 38.7 3.8 41 51-95 7-47 (78)
29 2jt1_A PEFI protein; solution 96.3 0.0023 7.9E-08 39.8 2.6 34 59-95 22-55 (77)
30 2kko_A Possible transcriptiona 96.3 0.0042 1.4E-07 39.7 4.0 44 47-95 26-69 (108)
31 3jth_A Transcription activator 96.3 0.002 6.9E-08 40.0 2.3 44 47-95 24-67 (98)
32 2htj_A P fimbrial regulatory p 96.3 0.0032 1.1E-07 38.2 3.1 42 50-95 4-45 (81)
33 2g7u_A Transcriptional regulat 96.3 0.0017 5.8E-08 47.3 2.1 44 50-96 18-61 (257)
34 3cuo_A Uncharacterized HTH-typ 96.3 0.0033 1.1E-07 38.5 3.1 45 47-95 25-69 (99)
35 3ech_A MEXR, multidrug resista 96.2 0.02 6.7E-07 37.0 7.0 46 47-96 38-83 (142)
36 1r1u_A CZRA, repressor protein 96.2 0.0035 1.2E-07 39.8 3.2 44 47-95 27-70 (106)
37 2ia2_A Putative transcriptiona 96.2 0.0014 4.6E-08 48.1 1.4 44 50-96 25-68 (265)
38 2oqg_A Possible transcriptiona 96.2 0.0046 1.6E-07 38.9 3.6 44 47-95 22-65 (114)
39 3f6o_A Probable transcriptiona 96.0 0.003 1E-07 40.8 2.3 44 47-95 19-62 (118)
40 1u2w_A CADC repressor, cadmium 96.0 0.0054 1.9E-07 40.0 3.5 45 47-95 43-87 (122)
41 2k02_A Ferrous iron transport 96.0 0.005 1.7E-07 39.3 3.1 41 51-95 7-47 (87)
42 1q1h_A TFE, transcription fact 95.9 0.0048 1.7E-07 39.1 2.6 45 48-95 20-64 (110)
43 2d1h_A ST1889, 109AA long hypo 95.8 0.0043 1.5E-07 38.1 2.1 35 59-96 34-68 (109)
44 1ku9_A Hypothetical protein MJ 95.8 0.0054 1.9E-07 39.4 2.7 42 51-95 31-72 (152)
45 2o03_A Probable zinc uptake re 95.8 0.0074 2.5E-07 39.9 3.4 47 47-96 12-63 (131)
46 1ub9_A Hypothetical protein PH 95.8 0.0047 1.6E-07 37.7 2.2 50 40-95 12-61 (100)
47 1sfx_A Conserved hypothetical 95.8 0.0062 2.1E-07 37.2 2.8 45 47-95 21-65 (109)
48 2fe3_A Peroxide operon regulat 95.7 0.011 3.9E-07 39.7 4.0 50 47-96 23-74 (145)
49 3fm5_A Transcriptional regulat 95.7 0.007 2.4E-07 39.5 2.9 46 48-96 41-86 (150)
50 3lwf_A LIN1550 protein, putati 95.7 0.0097 3.3E-07 41.2 3.7 51 36-95 25-75 (159)
51 3boq_A Transcriptional regulat 95.7 0.0098 3.4E-07 39.0 3.6 46 48-96 49-94 (160)
52 2pg4_A Uncharacterized protein 95.7 0.0074 2.5E-07 37.3 2.8 40 53-95 22-62 (95)
53 3eco_A MEPR; mutlidrug efflux 95.6 0.0072 2.5E-07 38.8 2.8 45 48-95 33-78 (139)
54 3bro_A Transcriptional regulat 95.6 0.0098 3.3E-07 38.0 3.4 45 48-95 36-81 (141)
55 2hr3_A Probable transcriptiona 95.6 0.011 3.7E-07 38.2 3.6 46 47-95 36-81 (147)
56 1r1t_A Transcriptional repress 95.6 0.01 3.5E-07 38.9 3.3 44 47-95 47-90 (122)
57 2nnn_A Probable transcriptiona 95.5 0.0094 3.2E-07 38.0 2.8 44 48-95 40-83 (140)
58 2pn6_A ST1022, 150AA long hypo 95.5 0.013 4.6E-07 38.7 3.7 45 47-95 4-48 (150)
59 3nrv_A Putative transcriptiona 95.4 0.013 4.3E-07 38.0 3.5 44 48-95 42-85 (148)
60 3t8r_A Staphylococcus aureus C 95.4 0.0098 3.3E-07 40.1 3.0 34 59-95 26-59 (143)
61 3jw4_A Transcriptional regulat 95.4 0.013 4.4E-07 38.1 3.5 46 48-96 43-89 (148)
62 2fbh_A Transcriptional regulat 95.4 0.013 4.5E-07 37.5 3.3 45 48-95 39-83 (146)
63 3f6v_A Possible transcriptiona 95.3 0.0078 2.7E-07 41.1 2.3 52 38-96 52-103 (151)
64 2gxg_A 146AA long hypothetical 95.3 0.013 4.5E-07 37.7 3.2 44 47-95 38-81 (146)
65 2lkp_A Transcriptional regulat 95.3 0.017 5.9E-07 36.8 3.8 44 47-95 33-76 (119)
66 2jsc_A Transcriptional regulat 95.3 0.0058 2E-07 39.6 1.4 44 47-95 22-65 (118)
67 3tgn_A ADC operon repressor AD 95.3 0.015 5.1E-07 37.5 3.3 45 47-96 39-83 (146)
68 1mzb_A Ferric uptake regulatio 95.3 0.02 6.8E-07 38.0 4.0 50 47-96 19-71 (136)
69 2x4h_A Hypothetical protein SS 95.2 0.016 5.4E-07 37.6 3.4 35 58-95 28-62 (139)
70 2xig_A Ferric uptake regulatio 95.2 0.02 6.8E-07 38.8 4.0 50 47-96 28-79 (150)
71 2cfx_A HTH-type transcriptiona 95.1 0.02 6.7E-07 38.0 3.7 45 47-95 6-50 (144)
72 3bpv_A Transcriptional regulat 95.1 0.017 5.8E-07 36.7 3.3 45 48-96 31-75 (138)
73 1ylf_A RRF2 family protein; st 95.1 0.016 5.6E-07 39.0 3.3 49 37-95 13-61 (149)
74 2w25_A Probable transcriptiona 95.1 0.02 6.8E-07 38.1 3.6 45 47-95 8-52 (150)
75 3k2z_A LEXA repressor; winged 95.1 0.02 6.7E-07 40.0 3.7 40 53-95 16-55 (196)
76 3k0l_A Repressor protein; heli 95.0 0.028 9.6E-07 37.2 4.3 44 48-95 48-91 (162)
77 3deu_A Transcriptional regulat 95.0 0.014 4.8E-07 39.3 2.8 46 48-96 55-100 (166)
78 3bja_A Transcriptional regulat 95.0 0.021 7.3E-07 36.2 3.5 44 48-95 35-78 (139)
79 2fbk_A Transcriptional regulat 95.0 0.015 5.1E-07 39.4 2.9 46 48-96 71-118 (181)
80 3kp7_A Transcriptional regulat 95.0 0.13 4.3E-06 33.4 7.3 43 48-95 40-82 (151)
81 3k69_A Putative transcription 95.0 0.035 1.2E-06 38.3 4.7 48 38-95 12-59 (162)
82 2cyy_A Putative HTH-type trans 95.0 0.023 7.8E-07 37.9 3.6 45 47-95 8-52 (151)
83 2p5v_A Transcriptional regulat 94.9 0.023 7.9E-07 38.3 3.6 45 47-95 11-55 (162)
84 1i1g_A Transcriptional regulat 94.9 0.025 8.4E-07 36.9 3.6 44 48-95 6-49 (141)
85 1xd7_A YWNA; structural genomi 94.8 0.029 1E-06 37.6 3.9 47 38-96 9-55 (145)
86 3df8_A Possible HXLR family tr 94.8 0.037 1.3E-06 35.6 4.2 34 60-96 39-75 (111)
87 2dbb_A Putative HTH-type trans 94.8 0.026 9E-07 37.4 3.5 45 47-95 10-54 (151)
88 3b73_A PHIH1 repressor-like pr 94.7 0.016 5.6E-07 38.1 2.4 46 47-96 14-61 (111)
89 2cg4_A Regulatory protein ASNC 94.7 0.027 9.1E-07 37.5 3.5 45 47-95 9-53 (152)
90 1qgp_A Protein (double strande 94.7 0.02 6.8E-07 35.1 2.6 46 47-95 15-62 (77)
91 3g3z_A NMB1585, transcriptiona 94.7 0.022 7.4E-07 36.8 2.9 44 48-95 33-76 (145)
92 3i4p_A Transcriptional regulat 94.7 0.029 9.8E-07 38.1 3.7 45 47-95 4-48 (162)
93 2fa5_A Transcriptional regulat 94.7 0.029 1E-06 36.8 3.6 45 48-96 51-95 (162)
94 3oop_A LIN2960 protein; protei 94.7 0.014 4.9E-07 37.6 2.0 44 48-95 39-82 (143)
95 1oyi_A Double-stranded RNA-bin 94.6 0.016 5.4E-07 36.7 2.1 43 48-95 19-61 (82)
96 2hzt_A Putative HTH-type trans 94.6 0.021 7.1E-07 36.3 2.6 41 51-96 19-60 (107)
97 1z7u_A Hypothetical protein EF 94.6 0.026 8.9E-07 36.1 3.1 39 52-95 28-67 (112)
98 3mwm_A ZUR, putative metal upt 94.6 0.03 1E-06 37.5 3.5 50 47-96 15-66 (139)
99 3u2r_A Regulatory protein MARR 94.6 0.02 6.7E-07 38.2 2.6 45 48-95 48-93 (168)
100 3bdd_A Regulatory protein MARR 94.6 0.023 7.9E-07 36.2 2.8 45 47-95 32-76 (142)
101 3cdh_A Transcriptional regulat 94.5 0.027 9.4E-07 36.7 3.1 44 48-95 45-88 (155)
102 3bj6_A Transcriptional regulat 94.5 0.022 7.6E-07 36.9 2.6 44 48-95 42-85 (152)
103 1p6r_A Penicillinase repressor 94.5 0.016 5.5E-07 34.9 1.8 47 48-95 11-58 (82)
104 1qbj_A Protein (double-strande 94.5 0.038 1.3E-06 34.4 3.6 46 47-95 11-58 (81)
105 2eth_A Transcriptional regulat 94.5 0.026 8.7E-07 37.0 2.9 45 47-95 45-89 (154)
106 2a61_A Transcriptional regulat 94.5 0.025 8.6E-07 36.2 2.8 44 48-95 35-78 (145)
107 2ia0_A Putative HTH-type trans 94.4 0.036 1.2E-06 38.2 3.6 45 47-95 18-62 (171)
108 2rdp_A Putative transcriptiona 94.4 0.027 9.3E-07 36.4 2.8 44 48-95 44-87 (150)
109 1lj9_A Transcriptional regulat 94.4 0.025 8.5E-07 36.3 2.6 44 48-95 31-74 (144)
110 1uly_A Hypothetical protein PH 94.4 0.045 1.5E-06 38.6 4.2 44 47-95 21-64 (192)
111 3f3x_A Transcriptional regulat 94.3 0.023 7.9E-07 36.6 2.4 43 48-95 39-81 (144)
112 1on2_A Transcriptional regulat 94.3 0.033 1.1E-06 36.2 3.2 33 60-95 21-53 (142)
113 2e1c_A Putative HTH-type trans 94.3 0.042 1.4E-06 37.9 3.8 45 47-95 28-72 (171)
114 2w57_A Ferric uptake regulatio 94.2 0.029 1E-06 38.0 2.8 50 47-96 18-70 (150)
115 2qww_A Transcriptional regulat 94.2 0.029 9.8E-07 36.5 2.6 45 48-96 43-87 (154)
116 2bv6_A MGRA, HTH-type transcri 94.2 0.038 1.3E-06 35.4 3.2 44 48-95 39-82 (142)
117 4hbl_A Transcriptional regulat 94.1 0.029 9.9E-07 36.6 2.5 45 48-96 43-87 (149)
118 1xmk_A Double-stranded RNA-spe 94.0 0.04 1.4E-06 34.4 2.9 42 50-95 15-57 (79)
119 1jgs_A Multiple antibiotic res 94.0 0.036 1.2E-06 35.3 2.8 44 48-95 36-79 (138)
120 1tbx_A ORF F-93, hypothetical 94.0 0.034 1.1E-06 34.3 2.5 45 48-96 10-58 (99)
121 2g9w_A Conserved hypothetical 93.9 0.035 1.2E-06 36.5 2.7 49 47-95 10-59 (138)
122 3nqo_A MARR-family transcripti 93.9 0.039 1.3E-06 37.9 3.0 46 47-95 42-88 (189)
123 2fbi_A Probable transcriptiona 93.9 0.028 9.5E-07 35.8 2.1 45 47-95 37-81 (142)
124 1z91_A Organic hydroperoxide r 93.8 0.021 7.1E-07 36.8 1.4 45 48-96 42-86 (147)
125 3s2w_A Transcriptional regulat 93.8 0.035 1.2E-06 36.5 2.6 43 49-95 53-95 (159)
126 2p4w_A Transcriptional regulat 93.8 0.042 1.4E-06 39.2 3.1 45 47-96 16-60 (202)
127 3cjn_A Transcriptional regulat 93.7 0.038 1.3E-06 36.3 2.6 44 48-95 54-97 (162)
128 2pex_A Transcriptional regulat 93.7 0.039 1.3E-06 35.9 2.6 44 48-95 49-92 (153)
129 2nyx_A Probable transcriptiona 93.7 0.029 9.8E-07 37.5 2.0 44 48-95 47-90 (168)
130 4aik_A Transcriptional regulat 93.7 0.063 2.2E-06 35.7 3.6 41 52-95 37-77 (151)
131 3e6m_A MARR family transcripti 93.7 0.026 8.8E-07 37.3 1.7 44 48-95 55-98 (161)
132 4fx0_A Probable transcriptiona 93.4 0.054 1.8E-06 36.0 2.9 33 60-95 51-83 (148)
133 2qvo_A Uncharacterized protein 93.3 0.02 6.9E-07 35.4 0.6 32 60-94 29-60 (95)
134 2f2e_A PA1607; transcription f 93.3 0.07 2.4E-06 35.8 3.4 34 60-96 36-69 (146)
135 2k4b_A Transcriptional regulat 93.2 0.033 1.1E-06 35.8 1.6 48 47-95 36-84 (99)
136 1s3j_A YUSO protein; structura 93.2 0.031 1.1E-06 36.3 1.5 44 48-95 39-82 (155)
137 2hoe_A N-acetylglucosamine kin 93.2 0.054 1.8E-06 41.1 2.9 54 36-96 12-65 (380)
138 3hsr_A HTH-type transcriptiona 93.1 0.032 1.1E-06 36.0 1.4 41 51-95 41-81 (140)
139 2frh_A SARA, staphylococcal ac 93.1 0.036 1.2E-06 35.8 1.6 46 48-96 39-85 (127)
140 2xvc_A ESCRT-III, SSO0910; cel 93.0 0.093 3.2E-06 31.4 3.2 44 49-95 13-56 (59)
141 2qm3_A Predicted methyltransfe 93.0 0.055 1.9E-06 41.0 2.7 40 50-95 47-86 (373)
142 2wte_A CSA3; antiviral protein 93.0 0.063 2.2E-06 39.4 2.9 45 48-96 154-198 (244)
143 2fsw_A PG_0823 protein; alpha- 92.8 0.073 2.5E-06 33.6 2.8 34 59-95 36-70 (107)
144 1yyv_A Putative transcriptiona 92.6 0.053 1.8E-06 36.0 1.9 34 60-96 47-81 (131)
145 4b8x_A SCO5413, possible MARR- 92.5 0.047 1.6E-06 36.1 1.6 34 59-95 49-82 (147)
146 2dk5_A DNA-directed RNA polyme 92.5 0.068 2.3E-06 33.9 2.2 43 50-95 24-67 (91)
147 3eyy_A Putative iron uptake re 92.5 0.11 3.9E-06 34.8 3.5 48 47-95 20-69 (145)
148 1okr_A MECI, methicillin resis 92.5 0.038 1.3E-06 35.0 1.0 45 50-95 14-59 (123)
149 4ets_A Ferric uptake regulatio 92.3 0.15 5.1E-06 35.0 4.0 50 47-96 34-87 (162)
150 2lnb_A Z-DNA-binding protein 1 92.3 0.11 3.8E-06 32.8 3.0 42 50-94 23-64 (80)
151 2h09_A Transcriptional regulat 92.3 0.11 3.8E-06 34.2 3.2 39 53-95 47-85 (155)
152 2zkz_A Transcriptional repress 92.2 0.071 2.4E-06 33.3 2.0 44 47-95 28-71 (99)
153 4g6q_A Putative uncharacterize 91.9 0.064 2.2E-06 37.4 1.8 44 47-95 24-68 (182)
154 1j5y_A Transcriptional regulat 91.8 0.17 5.7E-06 35.0 3.8 44 47-93 22-65 (187)
155 4a5n_A Uncharacterized HTH-typ 91.7 0.1 3.6E-06 35.0 2.6 35 59-96 37-72 (131)
156 3hrs_A Metalloregulator SCAR; 91.0 0.19 6.4E-06 35.6 3.4 35 58-95 17-51 (214)
157 1bja_A Transcription regulator 90.9 0.21 7.2E-06 32.2 3.3 42 50-95 20-62 (95)
158 1sd4_A Penicillinase repressor 90.8 0.11 3.7E-06 32.9 1.9 47 48-95 12-59 (126)
159 1z6r_A MLC protein; transcript 90.8 0.23 7.8E-06 37.7 3.9 46 47-96 17-62 (406)
160 2obp_A Putative DNA-binding pr 90.7 0.24 8.3E-06 31.8 3.5 34 59-95 34-67 (96)
161 2fxa_A Protease production reg 90.7 0.11 3.7E-06 36.5 1.9 43 49-95 51-93 (207)
162 1p4x_A Staphylococcal accessor 90.6 0.14 4.9E-06 37.4 2.6 44 49-95 161-205 (250)
163 2oz6_A Virulence factor regula 90.3 0.16 5.5E-06 33.9 2.5 32 61-95 164-195 (207)
164 3dv8_A Transcriptional regulat 90.2 0.21 7.2E-06 33.6 3.0 32 61-95 169-200 (220)
165 2vn2_A DNAD, chromosome replic 90.0 0.33 1.1E-05 31.8 3.8 33 61-96 51-83 (128)
166 2yu3_A DNA-directed RNA polyme 89.8 0.16 5.3E-06 32.8 1.9 46 48-96 39-85 (95)
167 3e97_A Transcriptional regulat 89.8 0.24 8.2E-06 33.8 3.0 33 60-95 174-206 (231)
168 3u1d_A Uncharacterized protein 89.6 0.32 1.1E-05 33.7 3.6 45 48-95 31-77 (151)
169 3ryp_A Catabolite gene activat 89.5 0.21 7E-06 33.4 2.5 32 61-95 167-198 (210)
170 1z05_A Transcriptional regulat 89.5 0.28 9.5E-06 37.7 3.5 50 41-96 36-85 (429)
171 2qlz_A Transcription factor PF 89.4 0.062 2.1E-06 39.3 -0.2 45 47-96 13-57 (232)
172 2gau_A Transcriptional regulat 89.4 0.27 9.1E-06 33.6 3.0 33 60-95 179-211 (232)
173 2fmy_A COOA, carbon monoxide o 89.4 0.26 8.9E-06 33.4 2.9 33 60-95 166-198 (220)
174 1ft9_A Carbon monoxide oxidati 89.3 0.28 9.7E-06 33.3 3.1 32 61-95 163-194 (222)
175 2zcw_A TTHA1359, transcription 89.1 0.23 7.8E-06 33.3 2.5 32 61-95 146-177 (202)
176 3iwz_A CAP-like, catabolite ac 89.1 0.23 7.8E-06 33.7 2.5 32 61-95 187-218 (230)
177 3d0s_A Transcriptional regulat 89.1 0.28 9.7E-06 33.3 3.0 32 61-95 177-208 (227)
178 4ev0_A Transcription regulator 88.7 0.25 8.5E-06 33.2 2.5 33 60-95 162-194 (216)
179 1jhg_A Trp operon repressor; c 88.5 0.43 1.5E-05 31.0 3.4 39 47-90 46-84 (101)
180 1r7j_A Conserved hypothetical 88.3 0.4 1.4E-05 30.2 3.1 32 62-96 21-52 (95)
181 3dkw_A DNR protein; CRP-FNR, H 88.3 0.27 9.1E-06 33.3 2.4 33 60-95 177-209 (227)
182 3b02_A Transcriptional regulat 88.2 0.24 8.3E-06 33.1 2.1 32 61-95 139-170 (195)
183 3la7_A Global nitrogen regulat 88.1 0.36 1.2E-05 33.5 3.0 33 60-95 192-224 (243)
184 3e6c_C CPRK, cyclic nucleotide 88.0 0.37 1.3E-05 33.4 3.0 33 60-95 176-208 (250)
185 1zyb_A Transcription regulator 87.9 0.31 1E-05 33.6 2.6 32 61-95 186-217 (232)
186 1v4r_A Transcriptional repress 87.2 0.26 9E-06 30.6 1.7 34 59-95 32-66 (102)
187 3cta_A Riboflavin kinase; stru 87.1 0.35 1.2E-05 34.2 2.5 34 60-96 26-59 (230)
188 2esh_A Conserved hypothetical 86.1 1.7 5.8E-05 27.7 5.3 47 47-95 14-66 (118)
189 2gqq_A Leucine-responsive regu 85.7 0.12 4E-06 34.9 -0.6 45 47-95 14-58 (163)
190 2w48_A Sorbitol operon regulat 85.6 0.59 2E-05 34.6 3.2 33 60-95 20-52 (315)
191 3kcc_A Catabolite gene activat 85.5 0.47 1.6E-05 33.4 2.5 32 61-95 217-248 (260)
192 2bgc_A PRFA; bacterial infecti 85.2 0.87 3E-05 31.3 3.7 32 61-95 169-201 (238)
193 2v79_A DNA replication protein 84.8 0.8 2.7E-05 30.6 3.3 33 60-95 50-82 (135)
194 1hsj_A Fusion protein consisti 84.1 0.44 1.5E-05 36.5 1.9 43 51-96 409-452 (487)
195 4ham_A LMO2241 protein; struct 83.8 1.1 3.9E-05 29.1 3.6 34 59-95 35-69 (134)
196 3fx3_A Cyclic nucleotide-bindi 83.7 0.59 2E-05 31.9 2.3 30 61-93 178-207 (237)
197 4esf_A PADR-like transcription 83.4 1.9 6.4E-05 27.9 4.5 44 47-95 12-61 (117)
198 2b0l_A GTP-sensing transcripti 83.4 0.56 1.9E-05 29.8 1.9 34 59-95 40-74 (102)
199 1p4x_A Staphylococcal accessor 83.3 0.7 2.4E-05 33.7 2.7 42 51-95 39-81 (250)
200 3tqn_A Transcriptional regulat 83.1 0.74 2.5E-05 29.3 2.4 34 59-95 30-64 (113)
201 1o5l_A Transcriptional regulat 82.5 0.26 8.8E-06 33.5 0.0 32 61-95 164-195 (213)
202 1stz_A Heat-inducible transcri 82.0 1.2 4E-05 34.0 3.5 39 54-96 30-70 (338)
203 3oio_A Transcriptional regulat 81.9 1.3 4.4E-05 27.6 3.2 35 52-89 13-48 (113)
204 3mn2_A Probable ARAC family tr 81.7 0.98 3.3E-05 27.9 2.6 34 53-89 9-43 (108)
205 3iwf_A Transcription regulator 81.6 0.57 1.9E-05 30.2 1.4 42 48-92 19-63 (107)
206 2o3f_A Putative HTH-type trans 81.2 0.47 1.6E-05 30.5 1.0 42 48-92 23-67 (111)
207 3f8b_A Transcriptional regulat 80.9 2.3 7.9E-05 27.2 4.2 46 47-95 13-64 (116)
208 3oou_A LIN2118 protein; protei 80.7 1.3 4.3E-05 27.4 2.8 29 60-91 20-48 (108)
209 2ek5_A Predicted transcription 80.7 1.3 4.6E-05 29.0 3.1 34 59-95 25-59 (129)
210 1bia_A BIRA bifunctional prote 80.1 1.3 4.6E-05 33.0 3.2 43 49-95 8-50 (321)
211 3by6_A Predicted transcription 80.0 1.1 3.7E-05 29.2 2.4 34 59-95 32-66 (126)
212 1yg2_A Gene activator APHA; vi 80.0 1.8 6.1E-05 29.5 3.6 46 48-95 4-54 (179)
213 3c7j_A Transcriptional regulat 79.7 1.3 4.6E-05 31.5 3.0 34 59-95 47-80 (237)
214 3elk_A Putative transcriptiona 79.6 1.3 4.3E-05 28.7 2.6 44 47-95 15-64 (117)
215 3mkl_A HTH-type transcriptiona 79.2 1.9 6.5E-05 27.2 3.3 33 52-87 13-46 (120)
216 2xzm_8 RPS25E,; ribosome, tran 78.9 1.3 4.6E-05 30.6 2.6 33 60-95 62-94 (143)
217 3hhh_A Transcriptional regulat 78.8 2.9 0.0001 26.9 4.2 47 47-95 14-63 (116)
218 1xma_A Predicted transcription 78.3 1.5 5.2E-05 29.4 2.8 44 47-95 42-93 (145)
219 2p5k_A Arginine repressor; DNA 78.2 2 6.8E-05 23.9 2.9 31 53-87 12-47 (64)
220 3u5c_Z RP45, S31, YS23, 40S ri 78.1 1.6 5.6E-05 28.8 2.8 33 60-95 58-90 (108)
221 1fx7_A Iron-dependent represso 77.9 1.7 5.7E-05 30.7 3.0 31 63-96 26-56 (230)
222 3kor_A Possible Trp repressor; 77.6 1.7 5.7E-05 29.1 2.8 37 47-89 64-100 (119)
223 3neu_A LIN1836 protein; struct 77.6 1.7 5.7E-05 28.1 2.8 33 60-95 35-68 (125)
224 1cf7_A Protein (transcription 77.5 1.9 6.6E-05 26.4 2.8 34 59-95 28-62 (76)
225 1tc3_C Protein (TC3 transposas 77.4 1 3.6E-05 23.0 1.4 28 61-91 21-48 (51)
226 2vxz_A Pyrsv_GP04; viral prote 77.2 1.8 6.2E-05 30.5 3.0 42 50-96 15-56 (165)
227 2k9s_A Arabinose operon regula 77.1 2.5 8.5E-05 26.0 3.4 34 53-89 10-45 (107)
228 3l7w_A Putative uncharacterize 76.8 1.8 6.2E-05 27.2 2.7 44 47-95 10-57 (108)
229 2pjp_A Selenocysteine-specific 76.6 1.6 5.6E-05 28.0 2.5 33 60-95 19-51 (121)
230 2qq9_A Diphtheria toxin repres 76.4 1.8 6.1E-05 30.6 2.8 34 60-96 23-56 (226)
231 3frw_A Putative Trp repressor 76.2 2.2 7.6E-05 28.1 3.0 38 47-90 47-84 (107)
232 3lsg_A Two-component response 76.0 2 7E-05 26.1 2.7 28 60-90 18-45 (103)
233 1bl0_A Protein (multiple antib 75.5 1.9 6.5E-05 27.6 2.6 36 52-90 17-53 (129)
234 2qlz_A Transcription factor PF 74.9 1.3 4.6E-05 32.1 1.9 33 60-95 177-209 (232)
235 2o0m_A Transcriptional regulat 73.7 0.67 2.3E-05 34.9 0.0 42 50-95 24-65 (345)
236 2zcm_A Biofilm operon icaabcd 73.2 3.5 0.00012 26.6 3.5 31 37-74 9-40 (192)
237 1sgm_A Putative HTH-type trans 73.1 4.6 0.00016 25.6 4.0 22 53-74 17-39 (191)
238 3qkx_A Uncharacterized HTH-typ 72.3 4.3 0.00015 25.7 3.7 30 38-74 11-41 (188)
239 1lva_A Selenocysteine-specific 71.6 4 0.00014 29.5 3.7 42 50-94 145-187 (258)
240 1jko_C HIN recombinase, DNA-in 70.6 1.7 5.9E-05 22.6 1.2 22 62-86 22-43 (52)
241 2xdn_A HTH-type transcriptiona 70.4 5.5 0.00019 26.1 4.0 31 37-74 13-44 (210)
242 2p8t_A Hypothetical protein PH 70.4 3.3 0.00011 29.7 3.1 33 60-95 29-61 (200)
243 1uxc_A FRUR (1-57), fructose r 70.1 2.5 8.7E-05 24.7 2.0 15 79-93 33-47 (65)
244 2gmg_A Hypothetical protein PF 69.5 3.3 0.00011 27.2 2.6 23 50-74 15-37 (105)
245 3ppb_A Putative TETR family tr 69.5 5.4 0.00019 25.3 3.7 23 52-74 19-42 (195)
246 3sxy_A Transcriptional regulat 69.4 2.6 8.9E-05 29.1 2.3 34 59-95 33-66 (218)
247 2hyt_A TETR-family transcripti 69.4 6 0.00021 25.8 4.0 31 37-74 14-45 (197)
248 1u8b_A ADA polyprotein; protei 69.0 3.1 0.00011 26.6 2.4 33 53-89 86-118 (133)
249 3gzi_A Transcriptional regulat 69.0 7.2 0.00025 25.4 4.3 32 37-75 19-51 (218)
250 3rkx_A Biotin-[acetyl-COA-carb 68.8 4.2 0.00014 30.6 3.5 42 50-94 7-49 (323)
251 2qko_A Possible transcriptiona 68.4 8.2 0.00028 25.4 4.5 31 37-74 30-61 (215)
252 2eh3_A Transcriptional regulat 67.8 5.8 0.0002 25.4 3.6 29 39-74 6-35 (179)
253 2fq4_A Transcriptional regulat 67.7 4.6 0.00016 26.3 3.1 31 37-74 14-45 (192)
254 3ccy_A Putative TETR-family tr 67.1 6.2 0.00021 25.7 3.7 31 37-74 16-47 (203)
255 4esb_A Transcriptional regulat 67.0 2.9 9.8E-05 26.8 1.9 45 49-95 12-59 (115)
256 2yve_A Transcriptional regulat 67.0 6.4 0.00022 25.5 3.7 23 52-74 14-37 (185)
257 3iz6_V 40S ribosomal protein S 67.0 1.5 5.1E-05 29.0 0.5 33 60-95 59-91 (108)
258 3bqz_B HTH-type transcriptiona 66.7 5 0.00017 25.6 3.1 22 53-74 13-35 (194)
259 1sfu_A 34L protein; protein/Z- 66.6 4.3 0.00015 25.0 2.6 33 60-95 28-60 (75)
260 3ic7_A Putative transcriptiona 66.3 1.1 3.7E-05 29.2 -0.2 34 59-95 32-66 (126)
261 3pfi_A Holliday junction ATP-d 66.1 3.9 0.00013 29.5 2.7 34 59-95 277-311 (338)
262 2wui_A MEXZ, transcriptional r 66.0 6.5 0.00022 25.9 3.7 31 37-74 13-44 (210)
263 3vpr_A Transcriptional regulat 65.8 5.3 0.00018 25.8 3.1 29 39-74 7-36 (190)
264 3dpj_A Transcription regulator 65.8 5.3 0.00018 25.6 3.1 30 38-74 11-41 (194)
265 2dg8_A Putative TETR-family tr 65.5 5.4 0.00019 25.9 3.1 22 53-74 20-42 (193)
266 3kz9_A SMCR; transcriptional r 65.5 6.8 0.00023 25.0 3.6 31 37-74 19-50 (206)
267 2fd5_A Transcriptional regulat 65.5 6 0.0002 25.2 3.3 22 53-74 18-40 (180)
268 3lwj_A Putative TETR-family tr 65.0 5.5 0.00019 25.7 3.1 22 53-74 23-45 (202)
269 3f1b_A TETR-like transcription 64.8 5.7 0.00019 25.5 3.1 22 53-74 25-47 (203)
270 3nrg_A TETR family transcripti 64.7 6.9 0.00024 25.4 3.5 31 37-74 15-46 (217)
271 2dg7_A Putative transcriptiona 64.5 5.9 0.0002 25.6 3.1 22 53-74 18-40 (195)
272 2iu5_A DHAS, YCEG, HTH-type dh 64.4 6.1 0.00021 25.6 3.2 31 37-74 15-46 (195)
273 3bru_A Regulatory protein, TET 64.4 7.6 0.00026 25.4 3.7 31 37-74 32-63 (222)
274 1hw1_A FADR, fatty acid metabo 64.2 5.2 0.00018 27.7 3.0 34 59-95 28-62 (239)
275 2hs5_A Putative transcriptiona 63.9 4.1 0.00014 28.8 2.4 34 59-95 49-82 (239)
276 2l0k_A Stage III sporulation p 63.7 3.7 0.00013 25.9 1.9 32 51-87 12-43 (93)
277 3vp5_A Transcriptional regulat 63.5 8 0.00027 25.2 3.7 31 37-74 14-45 (189)
278 3egq_A TETR family transcripti 63.4 5.6 0.00019 25.1 2.8 22 53-74 15-37 (170)
279 3dcf_A Transcriptional regulat 63.4 8.1 0.00028 25.0 3.7 31 37-74 33-64 (218)
280 3qph_A TRMB, A global transcri 63.4 0.42 1.5E-05 36.4 -3.1 33 60-95 31-63 (342)
281 3kkc_A TETR family transcripti 63.2 4.8 0.00017 25.4 2.5 43 37-86 14-65 (177)
282 2nx4_A Transcriptional regulat 62.9 6.4 0.00022 25.7 3.1 31 37-74 12-43 (194)
283 2i10_A Putative TETR transcrip 62.8 6.2 0.00021 26.0 3.1 30 38-74 14-44 (202)
284 3b81_A Transcriptional regulat 62.7 5.2 0.00018 25.7 2.6 31 37-74 13-44 (203)
285 3knw_A Putative transcriptiona 62.4 6.6 0.00023 25.4 3.1 31 37-74 16-47 (212)
286 3jsj_A Putative TETR-family tr 62.4 6.3 0.00022 25.2 3.0 21 53-74 20-41 (190)
287 3him_A Probable transcriptiona 62.4 6.1 0.00021 25.4 2.9 22 53-74 27-49 (211)
288 4hku_A LMO2814 protein, TETR t 62.2 5.5 0.00019 25.8 2.7 22 53-74 18-40 (178)
289 1pb6_A Hypothetical transcript 62.2 6.7 0.00023 25.4 3.1 31 37-74 20-51 (212)
290 2q24_A Putative TETR family tr 62.1 6.5 0.00022 25.4 3.0 29 38-74 18-47 (194)
291 2pij_A Prophage PFL 6 CRO; tra 61.9 7.5 0.00026 21.5 2.9 32 50-87 5-36 (67)
292 2di3_A Bacterial regulatory pr 61.8 5.8 0.0002 27.7 2.9 35 59-96 25-60 (239)
293 3on4_A Transcriptional regulat 61.6 5.3 0.00018 25.3 2.5 22 53-74 21-43 (191)
294 3bjb_A Probable transcriptiona 61.5 6.8 0.00023 25.9 3.1 31 37-74 24-55 (207)
295 2ibd_A Possible transcriptiona 61.5 6.9 0.00024 25.6 3.1 31 37-74 16-47 (204)
296 3dn7_A Cyclic nucleotide bindi 61.4 1.7 5.8E-05 28.6 0.0 27 60-89 167-193 (194)
297 2gen_A Probable transcriptiona 61.3 7.1 0.00024 25.5 3.1 30 38-74 10-40 (197)
298 2guh_A Putative TETR-family tr 61.3 6.6 0.00023 26.4 3.0 38 36-83 40-78 (214)
299 2x48_A CAG38821; archeal virus 61.3 4.4 0.00015 21.8 1.7 24 60-86 30-53 (55)
300 3anp_C Transcriptional repress 61.2 7 0.00024 25.5 3.0 43 38-87 12-63 (204)
301 2rae_A Transcriptional regulat 61.1 7.3 0.00025 25.2 3.1 22 53-74 28-50 (207)
302 3ihu_A Transcriptional regulat 61.1 5 0.00017 27.7 2.4 34 59-95 37-70 (222)
303 3crj_A Transcription regulator 61.1 5.4 0.00019 26.2 2.5 31 37-74 16-47 (199)
304 3he0_A Transcriptional regulat 61.0 5.6 0.00019 25.4 2.5 22 53-74 22-44 (196)
305 3lhq_A Acrab operon repressor 61.0 7.3 0.00025 25.1 3.1 30 38-74 17-47 (220)
306 2f07_A YVDT; helix-turn-helix, 60.8 7.1 0.00024 25.5 3.0 43 38-87 13-64 (197)
307 3qbm_A TETR transcriptional re 60.5 6 0.0002 25.2 2.6 22 53-74 18-40 (199)
308 3bhq_A Transcriptional regulat 60.5 7.4 0.00025 25.6 3.1 30 38-74 15-45 (211)
309 2o7t_A Transcriptional regulat 60.4 7.5 0.00026 25.2 3.1 30 38-74 11-41 (199)
310 3qqa_A CMER; alpha-helical, he 60.3 7.3 0.00025 25.3 3.0 30 38-74 22-52 (216)
311 3cdl_A Transcriptional regulat 60.2 5.9 0.0002 25.9 2.6 44 38-88 12-64 (203)
312 2d6y_A Putative TETR family re 60.1 7.4 0.00025 25.6 3.0 30 38-74 11-41 (202)
313 2g7g_A RHA04620, putative tran 59.9 5.4 0.00018 27.1 2.4 29 38-74 14-42 (213)
314 2wv0_A YVOA, HTH-type transcri 59.6 7.4 0.00025 27.7 3.1 34 59-95 31-65 (243)
315 2hxo_A Putative TETR-family tr 59.1 10 0.00035 26.2 3.8 31 37-74 18-49 (237)
316 2g7s_A Transcriptional regulat 59.0 8 0.00027 24.4 3.0 22 53-74 19-41 (194)
317 3dew_A Transcriptional regulat 59.0 6.3 0.00022 25.1 2.5 22 53-74 19-41 (206)
318 3f0c_A TETR-molecule A, transc 58.7 8.1 0.00028 25.1 3.0 30 38-74 14-44 (216)
319 2qtq_A Transcriptional regulat 58.4 8.6 0.00029 24.8 3.1 31 37-74 18-49 (213)
320 3bwg_A Uncharacterized HTH-typ 58.2 7.9 0.00027 27.4 3.1 34 59-95 26-60 (239)
321 1rkt_A Protein YFIR; transcrip 58.2 6.6 0.00023 25.7 2.5 31 37-74 14-45 (205)
322 3rd3_A Probable transcriptiona 58.1 6 0.00021 25.2 2.3 22 53-74 21-43 (197)
323 3g7r_A Putative transcriptiona 58.1 8.6 0.00029 25.6 3.1 32 36-74 36-68 (221)
324 3vib_A MTRR; helix-turn-helix 57.9 8.5 0.00029 25.2 3.0 29 39-74 14-43 (210)
325 1vi0_A Transcriptional regulat 57.9 6.4 0.00022 26.0 2.4 22 53-74 19-41 (206)
326 2np5_A Transcriptional regulat 57.7 6.6 0.00023 25.8 2.5 30 38-74 12-42 (203)
327 3cjd_A Transcriptional regulat 57.7 8.1 0.00028 25.4 2.9 31 37-74 14-45 (198)
328 3on2_A Probable transcriptiona 57.7 4 0.00014 26.0 1.3 22 53-74 23-45 (199)
329 3cwr_A Transcriptional regulat 57.6 6.8 0.00023 25.1 2.5 31 37-74 19-50 (208)
330 2co5_A Viral protein F93; vira 57.5 8.4 0.00029 24.2 2.8 36 60-96 27-62 (99)
331 2fbq_A Probable transcriptiona 57.3 8.6 0.00029 26.0 3.0 30 38-74 10-40 (235)
332 2w53_A Repressor, SMet; antibi 57.2 7 0.00024 25.8 2.5 30 38-74 14-44 (219)
333 1t33_A Putative transcriptiona 56.7 6.5 0.00022 25.8 2.3 29 38-74 15-44 (224)
334 2xub_A DNA-directed RNA polyme 56.6 27 0.00093 27.8 6.3 52 29-95 13-64 (534)
335 1ku3_A Sigma factor SIGA; heli 56.4 8.4 0.00029 22.0 2.5 16 60-75 29-44 (73)
336 3col_A Putative transcription 56.4 5.7 0.00019 25.2 1.9 22 53-74 21-43 (196)
337 2qib_A TETR-family transcripti 56.4 9 0.00031 25.7 3.0 30 38-74 16-46 (231)
338 1ui5_A A-factor receptor homol 56.2 9.5 0.00032 25.4 3.1 30 38-74 12-42 (215)
339 3ni7_A Bacterial regulatory pr 56.2 15 0.00052 24.7 4.2 30 38-74 10-40 (213)
340 3edp_A LIN2111 protein; APC883 56.1 9 0.00031 27.1 3.1 34 59-95 30-64 (236)
341 3bni_A Putative TETR-family tr 55.9 9.6 0.00033 25.5 3.1 31 37-74 45-76 (229)
342 3ljl_A Transcriptional regulat 55.9 5 0.00017 25.5 1.5 22 53-74 25-47 (156)
343 3c2b_A Transcriptional regulat 55.7 7.5 0.00026 25.4 2.5 30 38-74 18-48 (221)
344 3gbg_A TCP pilus virulence reg 55.6 10 0.00035 26.5 3.3 33 52-87 175-208 (276)
345 3to7_A Histone acetyltransfera 55.4 9.3 0.00032 28.9 3.2 33 57-95 204-236 (276)
346 1zk8_A Transcriptional regulat 55.3 5.2 0.00018 25.5 1.6 22 53-74 19-41 (183)
347 3mvp_A TETR/ACRR transcription 55.2 7.6 0.00026 25.1 2.4 30 38-74 29-59 (217)
348 2oer_A Probable transcriptiona 55.2 8.2 0.00028 25.5 2.6 31 37-74 26-57 (214)
349 1jhf_A LEXA repressor; LEXA SO 55.1 12 0.00041 25.4 3.5 32 62-95 26-57 (202)
350 3q0w_A HTH-type transcriptiona 54.9 10 0.00034 25.5 3.1 30 38-74 47-77 (236)
351 2xi8_A Putative transcription 54.6 10 0.00035 20.3 2.6 23 60-85 13-35 (66)
352 3rh2_A Hypothetical TETR-like 54.4 8.1 0.00028 25.2 2.5 22 53-74 14-36 (212)
353 2gfn_A HTH-type transcriptiona 54.2 7.9 0.00027 25.7 2.4 30 38-74 12-42 (209)
354 2oi8_A Putative regulatory pro 53.8 8.7 0.0003 25.9 2.6 32 36-74 17-49 (216)
355 2zb9_A Putative transcriptiona 53.7 8.6 0.00029 25.2 2.5 22 53-74 34-56 (214)
356 3kkd_A Transcriptional regulat 53.7 9.2 0.00031 25.6 2.7 31 37-74 37-68 (237)
357 3s5r_A Transcriptional regulat 53.7 11 0.00036 24.5 2.9 22 53-74 21-43 (216)
358 2hyj_A Putative TETR-family tr 53.3 6.8 0.00023 25.7 2.0 31 37-74 14-45 (200)
359 1neq_A DNA-binding protein NER 53.3 5.6 0.00019 23.6 1.4 22 60-84 21-42 (74)
360 2ras_A Transcriptional regulat 53.2 7.6 0.00026 25.3 2.2 31 37-74 13-44 (212)
361 2hxi_A Putative transcriptiona 53.1 12 0.0004 26.1 3.3 31 37-74 31-62 (241)
362 2pq8_A Probable histone acetyl 53.1 7.7 0.00026 29.4 2.4 32 58-95 205-236 (278)
363 1d5y_A ROB transcription facto 52.9 6.8 0.00023 27.6 2.0 36 52-90 9-45 (292)
364 3aqt_A Bacterial regulatory pr 52.8 9.4 0.00032 25.9 2.7 32 36-74 47-79 (245)
365 3c07_A Putative TETR-family tr 52.7 14 0.00048 25.9 3.6 32 36-74 42-74 (273)
366 2p7v_B Sigma-70, RNA polymeras 52.5 9.7 0.00033 21.4 2.3 16 60-75 24-39 (68)
367 3bqy_A Putative TETR family tr 52.2 8.6 0.0003 26.0 2.4 22 53-74 13-35 (209)
368 2zcx_A SCO7815, TETR-family tr 52.1 12 0.0004 25.5 3.0 31 37-74 25-56 (231)
369 3f8m_A GNTR-family protein tra 52.0 11 0.00039 26.8 3.1 34 59-95 33-67 (248)
370 3v6g_A Probable transcriptiona 51.7 12 0.00042 24.9 3.1 22 53-74 25-47 (208)
371 2v57_A TETR family transcripti 51.6 15 0.0005 23.3 3.3 30 37-74 16-45 (190)
372 2id6_A Transcriptional regulat 51.1 6.8 0.00023 25.6 1.7 22 53-74 16-38 (202)
373 3f2g_A Alkylmercury lyase; MER 51.0 13 0.00044 27.1 3.2 33 52-88 28-60 (220)
374 3nnr_A Transcriptional regulat 51.0 9.8 0.00034 25.2 2.5 22 53-74 16-38 (228)
375 3fiw_A Putative TETR-family tr 50.9 10 0.00035 25.7 2.6 31 37-74 27-58 (211)
376 3ri2_A Transcriptional regulat 50.8 19 0.00064 23.3 3.8 45 47-95 22-69 (123)
377 3hta_A EBRA repressor; TETR fa 50.3 10 0.00034 25.3 2.5 31 37-74 30-61 (217)
378 2qwt_A Transcriptional regulat 50.1 18 0.00063 23.4 3.7 31 37-74 15-45 (196)
379 2id3_A Putative transcriptiona 50.0 10 0.00035 25.3 2.5 31 37-74 42-73 (225)
380 2hku_A A putative transcriptio 50.0 14 0.00048 24.2 3.1 31 37-74 22-52 (215)
381 2of7_A Putative TETR-family tr 49.9 13 0.00045 25.5 3.0 32 36-74 49-81 (260)
382 1tty_A Sigma-A, RNA polymerase 49.8 12 0.00041 22.2 2.5 16 60-75 37-52 (87)
383 2jj7_A Hemolysin II regulatory 49.5 5.4 0.00018 25.5 0.9 22 53-74 18-40 (186)
384 2z99_A Putative uncharacterize 49.3 9.9 0.00034 27.6 2.4 41 49-96 103-143 (219)
385 3eet_A Putative GNTR-family tr 49.3 13 0.00045 26.9 3.1 34 59-95 50-84 (272)
386 2qc0_A Uncharacterized protein 48.9 11 0.00037 28.7 2.7 42 51-96 302-343 (373)
387 3g1o_A Transcriptional regulat 48.8 13 0.00045 25.2 2.9 30 38-74 46-76 (255)
388 1z0x_A Transcriptional regulat 48.8 11 0.00038 25.5 2.5 22 53-74 16-39 (220)
389 3loc_A HTH-type transcriptiona 48.5 5.6 0.00019 25.6 0.9 20 55-74 31-51 (212)
390 3geu_A Intercellular adhesion 48.2 4.1 0.00014 26.2 0.2 22 53-74 14-36 (189)
391 3lmm_A Uncharacterized protein 48.0 12 0.0004 30.5 2.9 42 50-95 434-480 (583)
392 1t6s_A Conserved hypothetical 47.8 5.9 0.0002 27.4 1.0 41 49-96 97-137 (162)
393 2k9l_A RNA polymerase sigma fa 47.7 22 0.00074 21.1 3.4 37 51-90 37-74 (76)
394 3bs3_A Putative DNA-binding pr 47.7 15 0.00052 20.3 2.7 15 60-74 22-36 (76)
395 3omt_A Uncharacterized protein 47.6 11 0.00037 21.1 2.0 15 60-74 20-34 (73)
396 4aci_A HTH-type transcriptiona 47.1 6.3 0.00022 25.2 1.0 22 53-74 25-47 (191)
397 4a0z_A Transcription factor FA 46.9 13 0.00044 25.9 2.6 40 50-93 16-55 (190)
398 1pdn_C Protein (PRD paired); p 46.8 21 0.00071 21.5 3.4 31 61-94 33-63 (128)
399 3mnl_A KSTR, transcriptional r 46.8 6.4 0.00022 25.3 1.0 22 53-74 31-53 (203)
400 3pas_A TETR family transcripti 46.5 6.4 0.00022 24.9 0.9 22 53-74 19-41 (195)
401 2y2z_A SIM16, SIMR, putative r 46.4 13 0.00043 26.5 2.6 31 37-74 29-60 (267)
402 3o60_A LIN0861 protein; PSI, M 46.3 25 0.00087 23.1 4.0 22 53-74 30-53 (185)
403 2g7l_A TETR-family transcripti 46.1 11 0.00038 26.3 2.2 31 37-74 21-52 (243)
404 2fq3_A Transcription regulator 46.1 38 0.0013 21.8 4.6 41 52-95 57-98 (104)
405 2qen_A Walker-type ATPase; unk 46.1 26 0.0009 24.5 4.2 41 50-95 286-331 (350)
406 3b7h_A Prophage LP1 protein 11 46.0 14 0.00047 20.6 2.3 15 60-74 19-33 (78)
407 2r1j_L Repressor protein C2; p 46.0 9.3 0.00032 20.6 1.5 23 60-85 17-39 (68)
408 3lsj_A DEST; transcriptional r 46.0 13 0.00044 24.3 2.4 31 37-74 13-45 (220)
409 2iai_A Putative transcriptiona 45.8 11 0.00037 25.2 2.0 22 53-74 41-63 (230)
410 2opt_A Actii protein; helical 45.8 13 0.00043 25.9 2.5 27 54-83 18-45 (234)
411 2g3b_A Putative TETR-family tr 45.6 6.6 0.00023 26.0 0.9 22 53-74 14-36 (208)
412 3e7q_A Transcriptional regulat 45.6 6.8 0.00023 25.2 1.0 22 53-74 25-47 (215)
413 1zug_A Phage 434 CRO protein; 45.4 16 0.00056 19.8 2.5 14 60-73 15-28 (71)
414 3frq_A Repressor protein MPHR( 45.1 7 0.00024 25.2 1.0 20 55-74 21-41 (195)
415 2a6c_A Helix-turn-helix motif; 45.1 15 0.00053 21.2 2.5 15 60-74 30-44 (83)
416 1y7y_A C.AHDI; helix-turn-heli 44.7 17 0.00059 19.9 2.5 23 60-85 25-47 (74)
417 2l8n_A Transcriptional repress 44.0 6.3 0.00022 23.1 0.5 33 61-93 9-53 (67)
418 1r69_A Repressor protein CI; g 43.7 18 0.00062 19.5 2.5 13 61-73 14-26 (69)
419 1adr_A P22 C2 repressor; trans 43.6 11 0.00036 20.9 1.5 23 60-85 17-39 (76)
420 3lmm_A Uncharacterized protein 43.4 5 0.00017 32.7 0.0 41 51-95 521-561 (583)
421 3maj_A DNA processing chain A; 43.4 12 0.00041 29.3 2.2 42 49-95 331-372 (382)
422 2ou2_A Histone acetyltransfera 43.2 22 0.00074 26.9 3.5 29 61-95 212-240 (280)
423 2b5a_A C.BCLI; helix-turn-heli 43.0 19 0.00064 19.9 2.5 23 60-85 22-44 (77)
424 2jpc_A SSRB; DNA binding prote 42.8 15 0.00051 19.8 2.0 16 60-75 12-27 (61)
425 2wiu_B HTH-type transcriptiona 42.8 14 0.00049 21.1 2.1 24 60-86 24-47 (88)
426 3nxc_A HTH-type protein SLMA; 42.6 15 0.0005 23.7 2.2 19 56-74 39-58 (212)
427 2o8x_A Probable RNA polymerase 42.3 17 0.00058 19.9 2.3 16 60-75 30-45 (70)
428 2dql_A PEX protein; circadian 42.2 23 0.00079 22.4 3.1 41 52-95 28-73 (115)
429 3t76_A VANU, transcriptional r 42.2 18 0.00063 21.9 2.5 15 60-74 36-50 (88)
430 2pz9_A Putative regulatory pro 41.6 8.4 0.00029 25.7 1.0 22 53-74 41-63 (226)
431 2o38_A Hypothetical protein; a 41.5 29 0.001 22.0 3.6 15 60-74 52-66 (120)
432 1gdt_A GD resolvase, protein ( 41.4 20 0.0007 23.9 2.9 23 61-86 158-180 (183)
433 3eup_A Transcriptional regulat 41.4 5.9 0.0002 25.4 0.1 22 53-74 22-44 (204)
434 2r0q_C Putative transposon TN5 41.1 16 0.00055 25.0 2.4 23 61-86 175-197 (209)
435 3qq6_A HTH-type transcriptiona 41.0 12 0.00042 21.5 1.5 24 60-86 22-45 (78)
436 2xpw_A Tetracycline repressor 40.6 8.9 0.00031 25.9 1.0 15 60-74 22-36 (207)
437 2elh_A CG11849-PA, LD40883P; s 40.4 16 0.00056 21.7 2.1 25 62-89 39-63 (87)
438 2k9q_A Uncharacterized protein 40.4 13 0.00043 21.1 1.5 23 60-85 14-36 (77)
439 2ict_A Antitoxin HIGA; helix-t 39.8 17 0.00058 21.4 2.1 24 60-86 20-43 (94)
440 3t72_q RNA polymerase sigma fa 39.7 21 0.00072 22.3 2.6 16 60-75 38-53 (99)
441 2jn6_A Protein CGL2762, transp 39.5 17 0.00058 21.7 2.0 29 61-92 23-51 (97)
442 3f6w_A XRE-family like protein 39.4 13 0.00045 21.1 1.5 23 60-85 26-48 (83)
443 1y10_A Hypothetical protein RV 39.3 19 0.00064 28.1 2.7 27 60-89 64-91 (407)
444 1k78_A Paired box protein PAX5 39.2 30 0.001 21.9 3.4 31 61-94 48-78 (149)
445 2np3_A Putative TETR-family re 39.0 8.8 0.0003 25.1 0.7 22 53-74 41-63 (212)
446 1t6s_A Conserved hypothetical 39.0 31 0.001 23.7 3.5 29 58-89 19-49 (162)
447 3npi_A TETR family regulatory 38.9 10 0.00034 25.8 1.0 21 54-74 30-51 (251)
448 3s8q_A R-M controller protein; 38.8 14 0.00048 21.0 1.5 23 60-85 23-45 (82)
449 1fse_A GERE; helix-turn-helix 38.8 25 0.00084 19.4 2.6 16 60-75 25-40 (74)
450 2ewt_A BLDD, putative DNA-bind 38.7 19 0.00065 19.6 2.0 23 60-85 20-44 (71)
451 2ra5_A Putative transcriptiona 38.5 6.5 0.00022 28.0 -0.0 34 59-95 37-71 (247)
452 2zfw_A PEX; five alpha-helices 38.4 27 0.00091 23.5 3.1 41 52-95 50-95 (148)
453 1ldj_A Cullin homolog 1, CUL-1 38.4 15 0.00052 30.6 2.2 34 59-95 601-634 (760)
454 3kjx_A Transcriptional regulat 37.5 19 0.00066 25.7 2.4 24 60-86 9-32 (344)
455 1z4h_A TORI, TOR inhibition pr 37.5 16 0.00054 20.8 1.6 24 60-86 9-32 (66)
456 2ef8_A C.ECOT38IS, putative tr 37.1 16 0.00053 20.7 1.5 15 60-74 22-36 (84)
457 3kz3_A Repressor protein CI; f 37.1 15 0.00053 20.9 1.5 15 60-74 24-38 (80)
458 3l9f_A Putative uncharacterize 36.7 17 0.00057 25.6 1.9 43 51-95 41-88 (204)
459 3h5n_A MCCB protein; ubiquitin 36.3 29 0.001 26.1 3.3 35 58-95 48-82 (353)
460 3hh0_A Transcriptional regulat 36.2 29 0.00098 23.0 3.0 28 61-95 4-31 (146)
461 1g2h_A Transcriptional regulat 35.9 50 0.0017 18.4 3.6 22 63-87 35-56 (61)
462 2lfc_A Fumarate reductase, fla 35.7 18 0.00062 24.0 1.9 22 61-85 95-116 (160)
463 3ke2_A Uncharacterized protein 35.5 28 0.00094 23.2 2.7 40 49-93 23-62 (117)
464 3eqx_A FIC domain containing t 34.9 21 0.00071 27.4 2.3 42 51-96 302-343 (373)
465 3fmy_A HTH-type transcriptiona 34.9 30 0.001 19.5 2.6 16 60-75 23-38 (73)
466 2kpj_A SOS-response transcript 34.9 18 0.0006 21.4 1.6 23 60-85 21-43 (94)
467 3hug_A RNA polymerase sigma fa 33.9 26 0.00089 20.7 2.3 16 60-75 52-67 (92)
468 3k9t_A Putative peptidase; str 33.4 17 0.0006 29.0 1.7 45 48-95 389-433 (435)
469 2vpr_A Tetracycline resistance 33.2 9.5 0.00032 25.9 0.1 15 60-74 23-37 (207)
470 3keo_A Redox-sensing transcrip 33.2 18 0.00062 25.8 1.6 35 52-89 22-57 (212)
471 3bd1_A CRO protein; transcript 33.1 24 0.00081 20.1 1.9 21 63-86 13-33 (79)
472 1lmb_3 Protein (lambda repress 32.2 20 0.00068 20.7 1.5 15 60-74 29-43 (92)
473 2ozu_A Histone acetyltransfera 32.1 54 0.0019 24.8 4.1 31 59-95 212-242 (284)
474 1hlv_A CENP-B, major centromer 32.0 30 0.001 21.4 2.4 25 60-87 24-48 (131)
475 3htu_A Vacuolar protein-sortin 31.8 40 0.0014 20.7 2.9 33 60-92 26-63 (79)
476 4fe7_A Xylose operon regulator 31.6 26 0.00088 26.0 2.3 28 60-90 320-347 (412)
477 2vt3_A REX, redox-sensing tran 31.5 21 0.00071 25.3 1.7 35 51-88 22-57 (215)
478 3trb_A Virulence-associated pr 31.5 20 0.0007 22.2 1.5 24 60-86 26-49 (104)
479 4ac0_A Tetracycline repressor 31.3 12 0.00041 25.5 0.4 15 60-74 22-36 (202)
480 1nd9_A Translation initiation 31.2 29 0.00099 18.0 1.9 26 62-93 3-28 (49)
481 2dt5_A AT-rich DNA-binding pro 31.2 20 0.0007 25.2 1.6 36 50-88 16-52 (211)
482 3gpv_A Transcriptional regulat 31.1 37 0.0013 22.4 2.9 28 61-95 16-43 (148)
483 2k6x_A Sigma-A, RNA polymerase 31.0 63 0.0021 18.8 3.6 34 60-93 22-57 (72)
484 1ntc_A Protein (nitrogen regul 31.0 52 0.0018 19.7 3.3 32 52-88 57-88 (91)
485 3g5g_A Regulatory protein; tra 31.0 42 0.0014 20.3 2.9 23 60-85 40-62 (99)
486 2kfs_A Conserved hypothetical 31.0 11 0.00037 26.0 0.1 25 59-86 29-53 (148)
487 1in4_A RUVB, holliday junction 30.9 42 0.0014 24.4 3.4 34 59-95 274-308 (334)
488 3mzy_A RNA polymerase sigma-H 30.8 31 0.0011 21.4 2.3 16 60-75 123-138 (164)
489 2zhg_A Redox-sensitive transcr 30.7 43 0.0015 22.3 3.1 29 60-95 10-38 (154)
490 3cec_A Putative antidote prote 30.6 22 0.00074 21.3 1.5 23 60-85 30-52 (104)
491 1hqc_A RUVB; extended AAA-ATPa 30.5 36 0.0012 23.9 2.8 34 59-95 262-296 (324)
492 2rek_A Putative TETR-family tr 30.4 29 0.00097 22.2 2.1 14 61-74 35-48 (199)
493 1x57_A Endothelial differentia 30.4 47 0.0016 19.2 3.0 15 60-74 25-39 (91)
494 1j9i_A GPNU1 DBD;, terminase s 30.4 12 0.0004 21.3 0.2 22 62-86 3-24 (68)
495 2e1n_A PEX, period extender; c 30.3 31 0.0011 22.7 2.3 42 51-95 39-85 (138)
496 3dpl_C Cullin-5; ubiquitin, NE 30.2 23 0.0008 27.0 1.9 29 60-91 214-242 (382)
497 2z99_A Putative uncharacterize 30.2 47 0.0016 24.0 3.4 29 58-89 27-55 (219)
498 1x3u_A Transcriptional regulat 29.8 42 0.0014 18.8 2.6 16 60-75 30-45 (79)
499 2ev1_A Hypothetical protein RV 29.2 36 0.0012 24.7 2.7 26 60-88 76-102 (222)
500 3qwg_A ESX-1 secretion-associa 29.0 26 0.0009 22.5 1.8 13 60-72 23-35 (123)
No 1
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=99.64 E-value=2.3e-16 Score=121.05 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=71.7
Q ss_pred ccCCCCcHHHHHHHHHhccCcchhhHHhHHHHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCC--CCCCcccHHH
Q 041844 7 YGENNSSDELLQAQLLNCANPCLDNTFSFINSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQI--HPTKTRCLHF 83 (97)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~--~~~~~~~L~R 83 (97)
+++....+|+.+++.++ ++++++++.+++|++| ++|||||+|++++ +|+|++|||+++|+ +|.++..|+|
T Consensus 8 ~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~l~~a--~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~r 80 (364)
T 3p9c_A 8 TAADMAASADEDACMFA-----LQLASSSVLPMTLKNA--IELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDR 80 (364)
T ss_dssp -----CHHHHHHHHHHH-----HHHTTTTHHHHHHHHH--HHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHH
T ss_pred CCCCccchHHHHHHHHH-----HHHHHhHHHHHHHHHH--HHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHH
Confidence 34444778899999999 9999999999999999 9999999999875 79999999999997 7744559999
Q ss_pred HHHHHHhcCcccc
Q 041844 84 LVCSLVRSGFFNL 96 (97)
Q Consensus 84 lLR~Laa~gif~e 96 (97)
+||+|++.|+|++
T Consensus 81 lLr~L~~~g~l~~ 93 (364)
T 3p9c_A 81 ILRLLASYNVVTC 93 (364)
T ss_dssp HHHHHHHTTSEEE
T ss_pred HHHHHHhCCCEEE
Confidence 9999999999975
No 2
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=99.56 E-value=1.6e-15 Score=115.01 Aligned_cols=77 Identities=42% Similarity=0.736 Sum_probs=70.5
Q ss_pred cHHHHHHHHHhccCcchhhHHhHHHHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 041844 13 SDELLQAQLLNCANPCLDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSG 92 (97)
Q Consensus 13 ~~~~~~~~~~~~~~p~~~l~~~~~~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~g 92 (97)
+++.++++.++ ++++++++.+++|+++ ++|||||+|+++++|+|++|||+++|++|.+++.|+|+||+|++.|
T Consensus 4 ~~~~~~~~~~l-----~~~~~~~~~~~~l~~a--~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~g 76 (358)
T 1zg3_A 4 ESELYHAQIHL-----YKHVYNFVSSMALKSA--MELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNG 76 (358)
T ss_dssp TSCCTTHHHHH-----HHHHTTHHHHHHHHHH--HHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTT
T ss_pred hHHhhhHHHHH-----HHHHHHHHHHHHHHHH--HHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCC
Confidence 35677888899 9999999999999999 9999999998866799999999999998767899999999999999
Q ss_pred cccc
Q 041844 93 FFNL 96 (97)
Q Consensus 93 if~e 96 (97)
+|++
T Consensus 77 ll~~ 80 (358)
T 1zg3_A 77 FFAK 80 (358)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 9975
No 3
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.55 E-value=3.8e-15 Score=112.74 Aligned_cols=81 Identities=36% Similarity=0.651 Sum_probs=72.8
Q ss_pred CCCCcHHHHHHHHHhccCcchhhHHhHHHHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHH
Q 041844 9 ENNSSDELLQAQLLNCANPCLDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSL 88 (97)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~p~~~l~~~~~~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~L 88 (97)
|..+.++.++++..+ ++++++++.+++|+++ ++|||||+|+.+++|+|++|||+++|++|.+++.|+|+||+|
T Consensus 6 ~~~~~~~~~~a~~~l-----~~~~~~~~~~~~l~~a--~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L 78 (352)
T 1fp2_A 6 NGRKPSEIFKAQALL-----YKHIYAFIDSMSLKWA--VEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYL 78 (352)
T ss_dssp --CCSTHHHHHHHHH-----HHHHTTHHHHHHHHHH--HHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHH
T ss_pred cCCChHHHhhHHHHH-----HHHHHHHHHHHHHHHH--HHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHH
Confidence 445567899999999 9999999999999999 999999999886679999999999999876678999999999
Q ss_pred HhcCcccc
Q 041844 89 VRSGFFNL 96 (97)
Q Consensus 89 aa~gif~e 96 (97)
++.|+|++
T Consensus 79 ~~~gll~~ 86 (352)
T 1fp2_A 79 AHNGFFEI 86 (352)
T ss_dssp HHTTSEEE
T ss_pred HhCCeEEE
Confidence 99999975
No 4
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=99.54 E-value=4.8e-15 Score=113.67 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=67.5
Q ss_pred CcHHHHHHHHHhccCcchhhHHhHHHHHHHHHHHHHhcChhHHHhhC---CCCCCHHHHHHHhC-CCCCCcccHHHHHHH
Q 041844 12 SSDELLQAQLLNCANPCLDNTFSFINSMSLKCVKLIQVGIPDIIHNH---TKPMTLNQLLGALQ-IHPTKTRCLHFLVCS 87 (97)
Q Consensus 12 ~~~~~~~~~~~~~~~p~~~l~~~~~~s~aL~~a~~veLgI~D~La~~---~gp~s~~ELA~~~g-~~~~~~~~L~RlLR~ 87 (97)
+..++.+++.++ ++++++++.+++|++| ++|||||+|+++ ++|+|++|||+++| .+|.++..|+|+||+
T Consensus 14 ~~~~~~~~~~~~-----~~l~~~~~~~~~l~~a--~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~ 86 (368)
T 3reo_A 14 THSSDEEANLFA-----MQLASAAVLPMALKAA--IELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRL 86 (368)
T ss_dssp ---CHHHHHHHH-----HHHHTTTHHHHHHHHH--HHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHH
T ss_pred CchHHHHHHHHH-----HHHHHHHHHHHHHHHH--HHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHH
Confidence 445788889999 9999999999999999 999999999884 36899999999998 466445699999999
Q ss_pred HHhcCcccc
Q 041844 88 LVRSGFFNL 96 (97)
Q Consensus 88 Laa~gif~e 96 (97)
|++.|+|++
T Consensus 87 L~~~gll~~ 95 (368)
T 3reo_A 87 LASYSVVTY 95 (368)
T ss_dssp HHHTTSEEE
T ss_pred HHhCCCeEE
Confidence 999999975
No 5
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.49 E-value=1.6e-14 Score=110.23 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=67.7
Q ss_pred HHHHHHHHHhccCcchhhHHhHHHHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCc
Q 041844 14 DELLQAQLLNCANPCLDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGF 93 (97)
Q Consensus 14 ~~~~~~~~~~~~~p~~~l~~~~~~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gi 93 (97)
.+.++++.++ ++++++++.+++|+++ ++|||||+|+.+++|+|++|||+++|++| ..|+|+||+|++.|+
T Consensus 10 ~~~~~a~~~l-----~~l~~g~~~~~~l~~a--~~lgifd~L~~~~~~~t~~eLA~~~g~~~---~~l~rlLr~l~~~g~ 79 (363)
T 3dp7_A 10 CTAAEAQRLA-----QEIAFGPVVFQVSRLM--LKFGIFQLLSGKREGYTLQEISGRTGLTR---YAAQVLLEASLTIGT 79 (363)
T ss_dssp CCSTTHHHHH-----HHHHHHHHHHHHHHHH--HHTTHHHHHHTCTTCBCHHHHHHHHTCCH---HHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHH-----HHHHhhHHHHHHHHHH--HHhCHHHHHHhcCCCCCHHHHHHHhCcCH---HHHHHHHHHHhhCCC
Confidence 4677899999 9999999999999999 99999999987678999999999999955 899999999999999
Q ss_pred ccc
Q 041844 94 FNL 96 (97)
Q Consensus 94 f~e 96 (97)
|++
T Consensus 80 l~~ 82 (363)
T 3dp7_A 80 ILL 82 (363)
T ss_dssp EEE
T ss_pred eEe
Confidence 975
No 6
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=99.49 E-value=2.8e-14 Score=109.02 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=62.2
Q ss_pred HHHHHhccCcchhhHHhHHHHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 18 QAQLLNCANPCLDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 18 ~~~~~~~~~p~~~l~~~~~~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++...+ ++++.||+.|++|++| ++|||||+|+++++|+|+.|||+++|++| ..++|+||+|++.|+|+
T Consensus 7 ~~~~~L-----~~l~~Gf~~s~~L~aa--~eLglfd~L~~~~~p~t~~eLA~~~g~~~---~~l~rlLr~L~~~gll~ 74 (353)
T 4a6d_A 7 QAYRLL-----NDYANGFMVSQVLFAA--CELGVFDLLAEAPGPLDVAAVAAGVRASA---HGTELLLDICVSLKLLK 74 (353)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHH--HHHTHHHHHHHSSSCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHH--HHcCHHHHHhcCCCCCCHHHHHHhhCcCH---HHHHHHHHHHHHCCCEE
Confidence 455566 7889999999999999 99999999998889999999999999954 99999999999999986
No 7
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.45 E-value=4.8e-14 Score=107.54 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=66.4
Q ss_pred CcHHHHHHHHHhccCcch--hhHHhHHHHHHHHHHHHHhcChhHHHhhCCCC---CCHHHHHHHhCC---CCCCcccHHH
Q 041844 12 SSDELLQAQLLNCANPCL--DNTFSFINSMSLKCVKLIQVGIPDIIHNHTKP---MTLNQLLGALQI---HPTKTRCLHF 83 (97)
Q Consensus 12 ~~~~~~~~~~~~~~~p~~--~l~~~~~~s~aL~~a~~veLgI~D~La~~~gp---~s~~ELA~~~g~---~~~~~~~L~R 83 (97)
..++.++++..+ | +++++++.+++|+++ ++|||||+|+++++| +|++|||+++|+ +|.+++.|+|
T Consensus 15 ~~~~~~~~~~~l-----~~~~l~~~~~~~~~l~~a--~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~r 87 (372)
T 1fp1_D 15 ATSEQTEDSACL-----SAMVLTTNLVYPAVLNAA--IDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDR 87 (372)
T ss_dssp ----CCHHHHHH-----HHHHHHHTTHHHHHHHHH--HHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHH
T ss_pred chhhhhhHHHHH-----HHHHHHHHHHHHHHHHHH--HHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHH
Confidence 344567788888 8 999999999999999 999999999874336 999999999999 7666789999
Q ss_pred HHHHHHhcCcccc
Q 041844 84 LVCSLVRSGFFNL 96 (97)
Q Consensus 84 lLR~Laa~gif~e 96 (97)
+||+|++.|+|++
T Consensus 88 lLr~L~~~gll~~ 100 (372)
T 1fp1_D 88 MLRLLASYSVLTS 100 (372)
T ss_dssp HHHHHHHTTSEEE
T ss_pred HHHHHhhCCceEe
Confidence 9999999999975
No 8
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.42 E-value=1.3e-13 Score=104.39 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=64.8
Q ss_pred CcHHHHHHHHHhccCcchhhHHhHHHHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 041844 12 SSDELLQAQLLNCANPCLDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRS 91 (97)
Q Consensus 12 ~~~~~~~~~~~~~~~p~~~l~~~~~~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~ 91 (97)
++-...++...+ ++++++++.+++|++| ++|||||+|++ +|+|++|||+++|++| ..|+|+||+|++.
T Consensus 15 ~~~~~~~~~~~l-----~~~~~~~~~~~~l~~a--~~lglf~~l~~--g~~t~~elA~~~g~~~---~~l~rlLr~l~~~ 82 (348)
T 3lst_A 15 GDMDRLQSALAL-----YEEAMGYTYAAALRAA--AAVGVADHLVD--GPRTPAELAAATGTDA---DALRRVLRLLAVR 82 (348)
T ss_dssp -CCCHHHHHHHH-----HHHHTTHHHHHHHHHH--HHHTGGGGGTT--SCBCHHHHHHHHTCCH---HHHHHHHHHHHHT
T ss_pred CCCCCchHHHHH-----HHHHHHHHHHHHHHHH--HHcCchhHhhC--CCCCHHHHHHHhCcCH---HHHHHHHHHHHhC
Confidence 333455788888 9999999999999999 99999999965 7999999999999955 8999999999999
Q ss_pred Ccccc
Q 041844 92 GFFNL 96 (97)
Q Consensus 92 gif~e 96 (97)
|+|++
T Consensus 83 g~l~~ 87 (348)
T 3lst_A 83 DVVRE 87 (348)
T ss_dssp TSEEE
T ss_pred CCEEe
Confidence 99975
No 9
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.40 E-value=2.8e-13 Score=102.50 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=66.7
Q ss_pred CCcHHHHHHHHHhccCcchhhHH-hHHHHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHH
Q 041844 11 NSSDELLQAQLLNCANPCLDNTF-SFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLV 89 (97)
Q Consensus 11 ~~~~~~~~~~~~~~~~p~~~l~~-~~~~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~La 89 (97)
+++++.++++.++ +++++ +++.+++|+++ ++|||||+|++ +|+|++|||+++|+++ ..|+|+||+|+
T Consensus 22 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~a--~~lgif~~L~~--~~~t~~eLA~~~g~~~---~~l~rlLr~L~ 89 (359)
T 1x19_A 22 MSNNDLLNYYHRA-----NELVFKGLIEFSCMKAA--IELDLFSHMAE--GPKDLATLAADTGSVP---PRLEMLLETLR 89 (359)
T ss_dssp ECCCHHHHHHHHH-----HHHHTHHHHHHHHHHHH--HHHTHHHHHTT--CCBCHHHHHHHHTCCH---HHHHHHHHHHH
T ss_pred CCccccCCcchHH-----HHHHHHHHHHHHHHHHH--HHcCcHHHHcC--CCCCHHHHHHHhCcCh---HHHHHHHHHHH
Confidence 3456778888888 99887 89999999999 99999999975 8999999999999954 99999999999
Q ss_pred hcCcccc
Q 041844 90 RSGFFNL 96 (97)
Q Consensus 90 a~gif~e 96 (97)
+.|+|++
T Consensus 90 ~~gll~~ 96 (359)
T 1x19_A 90 QMRVINL 96 (359)
T ss_dssp HTTSEEE
T ss_pred hCCCeEe
Confidence 9999975
No 10
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.33 E-value=1.9e-12 Score=98.86 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=62.2
Q ss_pred HHHHHHHhccCcchhhHHhHHHHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 16 LLQAQLLNCANPCLDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 16 ~~~~~~~~~~~p~~~l~~~~~~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.......+ ++++++++.+++|+++ ++|||||+|++ +|+|++|||+++|++| ..|+|+||+|++.|+|+
T Consensus 35 ~~~~~~~l-----~~l~~~~~~~~~l~~a--~~lglf~~l~~--g~~t~~eLA~~~g~~~---~~l~rlLr~L~~~g~l~ 102 (369)
T 3gwz_A 35 RAAAEETV-----NDILQGAWKARAIHVA--VELGVPELLQE--GPRTATALAEATGAHE---QTLRRLLRLLATVGVFD 102 (369)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHH--HHHTTGGGGTT--SCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSSE
T ss_pred CChHHHHH-----HHHHHHHHHHHHHHHH--HHCChhhhhcC--CCCCHHHHHHHHCcCH---HHHHHHHHHHHhCCCEE
Confidence 33556667 9999999999999999 99999999974 7999999999999955 89999999999999998
Q ss_pred c
Q 041844 96 L 96 (97)
Q Consensus 96 e 96 (97)
+
T Consensus 103 ~ 103 (369)
T 3gwz_A 103 D 103 (369)
T ss_dssp E
T ss_pred E
Confidence 6
No 11
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.31 E-value=1.7e-12 Score=97.10 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=57.8
Q ss_pred chhhHHhHHHHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 28 CLDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 28 ~~~l~~~~~~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
+++++.+++.+++|++| ++|||||+|++ ||+|++|||+++|++| ..|+|+||+|++.|+|.+
T Consensus 9 l~~~~~g~~~~~~l~~a--~~lglf~~l~~--g~~t~~elA~~~~~~~---~~l~rlLr~l~~~gl~~~ 70 (332)
T 3i53_A 9 GLRALADLATPMAVRVA--ATLRVADHIAA--GHRTAAEIASAAGAHA---DSLDRLLRHLVAVGLFTR 70 (332)
T ss_dssp CHHHHTCCHHHHHHHHH--HHHTHHHHHHT--TCCBHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhhHHHHHHHHH--HHcChHHHHhc--CCCCHHHHHHHHCcCH---HHHHHHHHHHHhCCcEEe
Confidence 38889999999999999 99999999975 7999999999999955 899999999999999976
No 12
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.31 E-value=3.4e-12 Score=95.13 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=57.4
Q ss_pred hhhHHhHHHHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 29 LDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 29 ~~l~~~~~~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++++++++.+++|+++ ++|||||+|++ +|+|++|||+++|+++ +.|+|+||+|++.|+|++
T Consensus 13 ~~~~~~~~~~~~l~~~--~~lgi~~~l~~--~~~t~~ela~~~~~~~---~~l~r~Lr~L~~~g~l~~ 73 (334)
T 2ip2_A 13 IQVVTGEWKSRCVYVA--TRLGLADLIES--GIDSDETLAAAVGSDA---ERIHRLMRLLVAFEIFQG 73 (334)
T ss_dssp HHHHHHHHHHHHHHHH--HHTTHHHHHHT--TCCSHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHH--HHcCcHHHHhC--CCCCHHHHHHHhCcCH---HHHHHHHHHHHhCCceEe
Confidence 8899999999999999 99999999965 7999999999999955 999999999999999975
No 13
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.27 E-value=1.6e-12 Score=97.55 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=56.1
Q ss_pred hhhHHhHHHHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 29 LDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 29 ~~l~~~~~~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++++++++.+++|+++ ++|||||+|+ + |+|++|||+++|++| ..|+|+||+|++.|+|++
T Consensus 29 ~~~~~~~~~~~~l~~a--~~lgif~~l~--~-~~t~~elA~~~~~~~---~~l~rlLr~L~~~gll~~ 88 (352)
T 3mcz_A 29 VKLSDQYRQSAILHYA--VADKLFDLTQ--T-GRTPAEVAASFGMVE---GKAAILLHALAALGLLTK 88 (352)
T ss_dssp HHHHHTHHHHHHHHHH--HHTTHHHHTT--S-CBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHH--HHCChHHHhC--C-CCCHHHHHHHhCcCh---HHHHHHHHHHHHCCCeEe
Confidence 8889999999999999 9999999994 3 999999999999955 899999999999999975
No 14
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.24 E-value=6.1e-12 Score=93.24 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=56.9
Q ss_pred hhhHHhHHHHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 29 LDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 29 ~~l~~~~~~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++++++++.+++|+++ ++|||||+|++ +|+|++|||+++|+++ +.|+|+||+|++.|+|++
T Consensus 11 ~~~~~~~~~~~~l~~~--~~l~i~~~l~~--~~~t~~ela~~~~~~~---~~l~r~L~~L~~~g~l~~ 71 (335)
T 2r3s_A 11 FNTVNAYQRSAAIKAA--VELNVFTAISQ--GIESSQSLAQKCQTSE---RGMRMLCDYLVIIGFMTK 71 (335)
T ss_dssp HHHHTTHHHHHHHHHH--HHTTHHHHHTT--SEECHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHH--HHcChHHHHhc--CCCCHHHHHHHhCCCc---hHHHHHHHHHHhcCCeEe
Confidence 7888899999999999 99999999975 7999999999999954 999999999999999964
No 15
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.19 E-value=2.4e-11 Score=91.57 Aligned_cols=61 Identities=25% Similarity=0.303 Sum_probs=57.0
Q ss_pred hhhHHhHHHHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 29 LDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 29 ~~l~~~~~~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++++++++.+++|+++ ++|||||+|+. +|+|++|||+++|+++ ..|+|+||+|++.|+|.+
T Consensus 21 ~~~~~~~~~~~~l~~~--~~l~i~~~l~~--~~~t~~eLA~~~g~~~---~~l~r~Lr~L~~~Gll~~ 81 (374)
T 1qzz_A 21 LKNLGNLVTPMALRVA--ATLRLVDHLLA--GADTLAGLADRTDTHP---QALSRLVRHLTVVGVLEG 81 (374)
T ss_dssp HHTTTCCHHHHHHHHH--HHTTHHHHHHT--TCCSHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEC
T ss_pred HHHHHhhHHHHHHHHH--HHcChHHHHhC--CCCCHHHHHHHhCcCH---HHHHHHHHHHhhCCCEEE
Confidence 7888999999999999 99999999954 7999999999999954 999999999999999976
No 16
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.11 E-value=5.7e-11 Score=89.32 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=56.9
Q ss_pred hhhHHhHHHHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 29 LDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 29 ~~l~~~~~~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++++++++.+++|+++ ++|||||+|+. +|+|++|||+++|+++ ..++|+||+|++.|+|++
T Consensus 24 ~~~~~~~~~~~~l~~~--~~l~i~~~l~~--~~~t~~ela~~~~~~~---~~l~r~L~~L~~~g~~~~ 84 (360)
T 1tw3_A 24 LIRLGSLHTPMVVRTA--ATLRLVDHILA--GARTVKALAARTDTRP---EALLRLIRHLVAIGLLEE 84 (360)
T ss_dssp HHHHHCSHHHHHHHHH--HHTTHHHHHHT--TCCBHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhHHHHHHHHHH--HHhCHHHHHhC--CCCCHHHHHHHhCcCH---HHHHHHHHHHHHCCCEEe
Confidence 7889999999999999 99999999954 8999999999999954 999999999999999975
No 17
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.07 E-value=0.00027 Score=42.42 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=38.3
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+..|.++|.++++|+|..|||+.+|++. ..+.|++..|...|++.
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr---~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPK---KTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEe
Confidence 4457788877667999999999999954 89999999999999864
No 18
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=97.01 E-value=0.00046 Score=51.16 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=38.4
Q ss_pred cChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 49 VGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 49 LgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
+.|.+.++.+++++|+.|||+++|++. ..++|+|+.|+..|++..
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~k---sTv~RlL~tL~~~G~v~~ 77 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPK---SSAHGLLAVMTELDLLAR 77 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC-----CHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEE
Confidence 367888888778999999999999955 899999999999999864
No 19
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=96.96 E-value=0.00042 Score=42.11 Aligned_cols=46 Identities=11% Similarity=0.213 Sum_probs=38.3
Q ss_pred HhcChhHHHhhCC-CCCCHHHHHHHh-----CCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHT-KPMTLNQLLGAL-----QIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~-gp~s~~ELA~~~-----g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+..|.+.|.+++ ++.|+.||++.+ ++ +...++|.|..|+..|++.
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i---s~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI---GLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCeE
Confidence 3455778887665 799999999999 77 4489999999999999875
No 20
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=96.69 E-value=0.00094 Score=43.92 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=38.7
Q ss_pred HhcChhHHHhhCCCC-CCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKP-MTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp-~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+..|...|.++++| +|+.|||+.++++ ...++|.++.|...|++.
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~s---~sTV~r~L~~L~~~GlV~ 73 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSLKLD---VSTVQRSVKKLHEKEILQ 73 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHHTSC---HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCcC---HHHHHHHHHHHHHCCCEE
Confidence 345566777777778 9999999999994 489999999999999885
No 21
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.68 E-value=0.0012 Score=47.76 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=38.4
Q ss_pred cChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 49 VGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 49 LgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
+.|.+.|+++++++|+.|||+.+|++. ..++|+|+.|...|++..
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~---stv~r~l~~L~~~G~v~~ 55 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSV---SNAYKYMVVLEEKGFVLR 55 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEEE
Confidence 356677877667899999999999954 899999999999998864
No 22
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=96.57 E-value=0.0011 Score=48.01 Aligned_cols=44 Identities=9% Similarity=0.159 Sum_probs=37.9
Q ss_pred ChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 50 GIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
.|.+.+.++++++|+.|||+.+|++. ..++|+|+.|...|++..
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~---stv~r~l~~L~~~G~v~~ 53 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPR---STVQRIINALEEEFLVEA 53 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCH---HHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEE
Confidence 56677877667899999999999954 899999999999998863
No 23
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=96.55 E-value=0.0005 Score=50.40 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=37.8
Q ss_pred ChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 50 GIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
.|.+.++++++++|+.|||+++|++. ..++|+|+.|+..|++..
T Consensus 10 ~IL~~l~~~~~~lsl~eia~~lgl~k---sT~~RlL~tL~~~G~v~~ 53 (260)
T 3r4k_A 10 TLLTYFNHGRLEIGLSDLTRLSGMNK---ATVYRLMSELQEAGFVEQ 53 (260)
T ss_dssp HHHTTCBTTBSEEEHHHHHHHHCSCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEE
Confidence 56677776568999999999999954 899999999999999864
No 24
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.50 E-value=0.0023 Score=39.86 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=38.1
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
.++.|.+.| . +++|..|||+.+|+++ ..++|.++.|...|++..
T Consensus 32 ~r~~Il~~L-~--~~~~~~eLa~~l~is~---~tv~~~L~~L~~~Glv~~ 75 (96)
T 1y0u_A 32 VRRKILRML-D--KGRSEEEIMQTLSLSK---KQLDYHLKVLEAGFCIER 75 (96)
T ss_dssp HHHHHHHHH-H--TTCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHH-c--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEE
Confidence 566788888 5 7899999999999954 899999999999998863
No 25
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=96.48 E-value=0.0023 Score=41.84 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 59 TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
+++.|..|||+.+++++ ..++|+|+.|...|++..
T Consensus 24 ~~~~s~~ela~~~~i~~---~~v~~il~~L~~~Glv~~ 58 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSE---HYLEQLVSPLRNAGLVKS 58 (129)
T ss_dssp SCCBCHHHHHHHTTSCH---HHHHHHHHHHHHTTSEEE
T ss_pred CCcCCHHHHHHHHCcCH---HHHHHHHHHHHHCCceEe
Confidence 47899999999999955 899999999999998763
No 26
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.42 E-value=0.0043 Score=38.82 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=37.6
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
..+.|...|.+ +++|..|||+.+|+++ ..+.+-|+.|...|++.
T Consensus 24 ~r~~Il~~L~~--~~~~~~ela~~l~is~---~tvs~~L~~L~~~Glv~ 67 (102)
T 3pqk_A 24 VRLMLVCTLVE--GEFSVGELEQQIGIGQ---PTLSQQLGVLRESGIVE 67 (102)
T ss_dssp HHHHHHHHHHT--CCBCHHHHHHHHTCCT---THHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeE
Confidence 55666777754 7899999999999965 79999999999999885
No 27
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=96.34 E-value=0.0014 Score=47.90 Aligned_cols=44 Identities=9% Similarity=0.206 Sum_probs=36.7
Q ss_pred ChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 50 GIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
.|.+.|+.+++++|+.|||+.+|++. ..++|+|+.|...|++..
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~k---stv~r~l~tL~~~G~v~~ 70 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPK---TTVVRLVATMCARSVLTS 70 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEE
Confidence 45566655557999999999999954 899999999999998863
No 28
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.32 E-value=0.0041 Score=38.72 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=35.3
Q ss_pred hhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 51 IPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 51 I~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|-+.|.++ |.+|++|||+.+++++ ..++|.|..|...|++.
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~VS~---~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNTPQ---PMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTCCH---HHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 45677654 7999999999999955 99999999999999874
No 29
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.32 E-value=0.0023 Score=39.83 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|+|.|+.|||+.+|+.+ ..++|-|..|...|++.
T Consensus 22 g~~psv~EIa~~lgvS~---~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSI---YQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp TSCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCcEE
Confidence 78999999999999944 78999999999999875
No 30
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.31 E-value=0.0042 Score=39.69 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=37.4
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|...|.. +++|..|||+.+|+++ ..+.|.++.|...|++.
T Consensus 26 ~r~~IL~~L~~--~~~s~~eLa~~lgis~---stvs~~L~~L~~~GlV~ 69 (108)
T 2kko_A 26 RRLQILDLLAQ--GERAVEAIATATGMNL---TTASANLQALKSGGLVE 69 (108)
T ss_dssp TTHHHHHHHTT--CCEEHHHHHHHHTCCH---HHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHc--CCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeE
Confidence 45666777754 7999999999999954 89999999999999885
No 31
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.29 E-value=0.002 Score=40.00 Aligned_cols=44 Identities=23% Similarity=0.375 Sum_probs=38.1
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|...|.+ +++|..|||+.+|+++ ..+.|-|+.|...|++.
T Consensus 24 ~r~~Il~~L~~--~~~~~~ela~~l~is~---~tvs~~L~~L~~~Glv~ 67 (98)
T 3jth_A 24 RRLQILCMLHN--QELSVGELCAKLQLSQ---SALSQHLAWLRRDGLVT 67 (98)
T ss_dssp HHHHHHHHTTT--SCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeE
Confidence 55667777865 7999999999999954 89999999999999985
No 32
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.27 E-value=0.0032 Score=38.20 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=35.4
Q ss_pred ChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 50 GIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.|.+.|... +++|..|||+.+|+++ ..++|.|+.|...|++.
T Consensus 4 ~Il~~L~~~-~~~s~~eLa~~lgvs~---~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 4 EILEFLNRH-NGGKTAEIAEALAVTD---YQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHS-CCCCHHHHHHHHTSCH---HHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 356667654 6899999999999954 89999999999999886
No 33
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=96.25 E-value=0.0017 Score=47.30 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=37.2
Q ss_pred ChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 50 GIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
.|.+.|..+++++|+.|||+.+|++. ..++|+|+.|...|++..
T Consensus 18 ~iL~~l~~~~~~~~~~eia~~~gl~~---stv~r~l~~L~~~G~v~~ 61 (257)
T 2g7u_A 18 AVLLAFDAQRPNPTLAELATEAGLSR---PAVRRILLTLQKLGYVAG 61 (257)
T ss_dssp HHHHTCSSSCSSCBHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEe
Confidence 55677765567899999999999954 899999999999998853
No 34
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.25 E-value=0.0033 Score=38.46 Aligned_cols=45 Identities=7% Similarity=0.093 Sum_probs=38.3
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|...|.. ++++|..|||+.+|+++ ..+.|.++.|...|++.
T Consensus 25 ~~~~il~~l~~-~~~~s~~ela~~l~is~---~tvs~~l~~L~~~glv~ 69 (99)
T 3cuo_A 25 KRLLILCMLSG-SPGTSAGELTRITGLSA---SATSQHLARMRDEGLID 69 (99)
T ss_dssp HHHHHHHHHTT-CCSEEHHHHHHHHCCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHh-CCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 56677777854 46999999999999954 89999999999999885
No 35
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.25 E-value=0.02 Score=36.99 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=35.8
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
.++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++..
T Consensus 38 ~~~~vL~~l~~~-~~~t~~eLa~~l~~~~---~tvs~~l~~L~~~Glv~r 83 (142)
T 3ech_A 38 PDVHVLKLIDEQ-RGLNLQDLGRQMCRDK---ALITRKIRELEGRNLVRR 83 (142)
T ss_dssp HHHHHHHHHHHT-TTCCHHHHHHHHC------CHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHhC-CCcCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEee
Confidence 455566667664 5899999999999955 899999999999999863
No 36
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.23 E-value=0.0035 Score=39.75 Aligned_cols=44 Identities=7% Similarity=0.121 Sum_probs=37.5
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|...|.+ +++|..|||+.+|+++ ..+.|.++.|...|++.
T Consensus 27 ~r~~IL~~L~~--~~~~~~ela~~l~is~---stvs~~L~~L~~~Glv~ 70 (106)
T 1r1u_A 27 NRIRIMELLSV--SEASVGHISHQLNLSQ---SNVSHQLKLLKSVHLVK 70 (106)
T ss_dssp HHHHHHHHHHH--CCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeE
Confidence 55667777764 7899999999999954 89999999999999875
No 37
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=96.21 E-value=0.0014 Score=48.12 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=37.2
Q ss_pred ChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 50 GIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
.|.+.|+.+++++|+.|||+.+|++. ..++|+|+.|...|++..
T Consensus 25 ~iL~~l~~~~~~~~~~eia~~~gl~~---stv~r~l~tL~~~G~v~~ 68 (265)
T 2ia2_A 25 AVIRCFDHRNQRRTLSDVARATDLTR---ATARRFLLTLVELGYVAT 68 (265)
T ss_dssp HHHHTCCSSCSSEEHHHHHHHHTCCH---HHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEe
Confidence 55677765567899999999999954 899999999999998863
No 38
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.19 E-value=0.0046 Score=38.90 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=36.9
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|...|.. +++|..|||+.+|+++ ..+.|.++.|...|++.
T Consensus 22 ~r~~IL~~L~~--~~~~~~ela~~l~is~---~tv~~~l~~L~~~gli~ 65 (114)
T 2oqg_A 22 TRWEILTELGR--ADQSASSLATRLPVSR---QAIAKHLNALQACGLVE 65 (114)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHSSSCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCee
Confidence 45566677744 7899999999999954 89999999999999885
No 39
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.05 E-value=0.003 Score=40.84 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=38.5
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
..+.|...|.+ +|+|+.|||+.+|+++ ..+.+.|+.|...|++.
T Consensus 19 ~R~~Il~~L~~--~~~~~~eLa~~l~is~---~tvs~hL~~L~~~GlV~ 62 (118)
T 3f6o_A 19 TRRAVLGRLSR--GPATVSELAKPFDMAL---PSFMKHIHFLEDSGWIR 62 (118)
T ss_dssp HHHHHHHHHHT--CCEEHHHHHTTCCSCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHhCcCH---HHHHHHHHHHHHCCCeE
Confidence 66777888864 8999999999999954 89999999999999985
No 40
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.03 E-value=0.0054 Score=39.98 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=39.0
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|...|.. .+++|..|||+.+|+++ ..+.|.|+.|...|++.
T Consensus 43 ~rl~IL~~L~~-~~~~s~~eLa~~l~is~---stvs~~L~~L~~~Glv~ 87 (122)
T 1u2w_A 43 NRAKITYALCQ-DEELCVCDIANILGVTI---ANASHHLRTLYKQGVVN 87 (122)
T ss_dssp HHHHHHHHHHH-SSCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHH-CCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeE
Confidence 56788888874 37899999999999954 89999999999999875
No 41
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.01 E-value=0.005 Score=39.32 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=35.4
Q ss_pred hhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 51 IPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 51 I~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|-+.|.+. |.+|++|||+.+++++ ..++|.|..|...|++.
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~VS~---~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQTPQ---PLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTCCH---HHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 45677654 7999999999999955 99999999999999875
No 42
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=95.88 E-value=0.0048 Score=39.07 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=36.4
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+.|...+...|+++|..|||+.+|++. ..+++.|+.|...|++.
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgvs~---~tV~~~L~~L~~~GlV~ 64 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNIKV---NDVRKKLNLLEEQGFVS 64 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTSCH---HHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 3456666644455899999999999954 88999999999999875
No 43
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=95.82 E-value=0.0043 Score=38.09 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 59 TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
.+++|..|||+.+|+++ ..++|+++.|...|++..
T Consensus 34 ~~~~t~~ela~~l~is~---~tv~~~l~~L~~~g~v~~ 68 (109)
T 2d1h_A 34 EKPITSEELADIFKLSK---TTVENSLKKLIELGLVVR 68 (109)
T ss_dssp CSCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeEe
Confidence 47899999999999954 899999999999998863
No 44
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=95.81 E-value=0.0054 Score=39.36 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=34.4
Q ss_pred hhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 51 IPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 51 I~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+...|....+++|..|||+.+|+++ ..+.|+++.|...|++.
T Consensus 31 il~~L~~~~~~~t~~ela~~l~~~~---stvs~~l~~L~~~G~v~ 72 (152)
T 1ku9_A 31 VYAILYLSDKPLTISDIMEELKISK---GNVSMSLKKLEELGFVR 72 (152)
T ss_dssp HHHHHHHCSSCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 3445532347899999999999954 89999999999999886
No 45
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=95.81 E-value=0.0074 Score=39.92 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=39.0
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHh-----CCCCCCcccHHHHHHHHHhcCcccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGAL-----QIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~-----g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
.+.-|.+.|.+.+++.|+.||.+.+ ++ +...++|.|..|+..|++.+
T Consensus 12 qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i---s~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 12 QRAAISTLLETLDDFRSAQELHDELRRRGENI---GLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCEEE
Confidence 4556778887777899999999998 44 55899999999999998763
No 46
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=95.79 E-value=0.0047 Score=37.69 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=39.9
Q ss_pred HHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 40 SLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 40 aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++..- .++.|...|..+ +++|..|||+.+|+++ ..+.|.++.|...|++.
T Consensus 12 ~l~~~--~~~~iL~~L~~~-~~~~~~ela~~l~is~---~tvs~~l~~L~~~gli~ 61 (100)
T 1ub9_A 12 ILGNP--VRLGIMIFLLPR-RKAPFSQIQKVLDLTP---GNLDSHIRVLERNGLVK 61 (100)
T ss_dssp HHHSH--HHHHHHHHHHHH-SEEEHHHHHHHTTCCH---HHHHHHHHHHHHTTSEE
T ss_pred ccCCh--HHHHHHHHHHhc-CCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 34444 566677777543 6899999999999954 89999999999999886
No 47
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=95.78 E-value=0.0062 Score=37.23 Aligned_cols=45 Identities=18% Similarity=0.314 Sum_probs=36.6
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|...|..+ +++|..|||+.+|+++ ..+.|.++.|...|++.
T Consensus 21 ~~~~il~~l~~~-~~~s~~ela~~l~is~---~tv~~~l~~L~~~glv~ 65 (109)
T 1sfx_A 21 SDVRIYSLLLER-GGMRVSEIARELDLSA---RFVRDRLKVLLKRGFVR 65 (109)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEE
Confidence 344556666543 6899999999999954 89999999999999886
No 48
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=95.70 E-value=0.011 Score=39.72 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=39.3
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCC-CC-CCcccHHHHHHHHHhcCcccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQI-HP-TKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~-~~-~~~~~L~RlLR~Laa~gif~e 96 (97)
.+.-|.+.|...+++.|+.||.+.+.- .| -+...++|.|..|+..|++..
T Consensus 23 qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 23 QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 455678888777789999999999832 11 155889999999999999863
No 49
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=95.69 E-value=0.007 Score=39.54 Aligned_cols=46 Identities=11% Similarity=0.136 Sum_probs=37.7
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
+..|...|..+++++|..|||+.+++++ ..+.|+++.|...|++..
T Consensus 41 q~~vL~~l~~~~~~~t~~eLa~~l~i~~---~tvs~~l~~Le~~Glv~r 86 (150)
T 3fm5_A 41 SYSVLVLACEQAEGVNQRGVAATMGLDP---SQIVGLVDELEERGLVVR 86 (150)
T ss_dssp HHHHHHHHHHSTTCCCSHHHHHHHTCCH---HHHHHHHHHHHTTTSEEC
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHCCCH---hHHHHHHHHHHHCCCEEe
Confidence 4445556666667899999999999954 899999999999999863
No 50
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.68 E-value=0.0097 Score=41.24 Aligned_cols=51 Identities=14% Similarity=0.248 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 36 INSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 36 ~~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
-...+|++. +.|.. ...++|.|+.|||+.+++++ ..|+++|+.|...|++.
T Consensus 25 ~~~yAlr~L--~~LA~----~~~~~~~s~~eIA~~~~i~~---~~l~kil~~L~~aGlv~ 75 (159)
T 3lwf_A 25 KGRYGLTIT--LELAK----RIGDGPISLRSIAQDKNLSE---HYLEQLIGPLRNAGIVK 75 (159)
T ss_dssp HHHHHHHHH--HHHHH----TTTSCCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHH--HHHHh----cCCCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCeEE
Confidence 344566666 54432 12347899999999999955 99999999999999876
No 51
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.67 E-value=0.0098 Score=39.02 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=37.7
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++.|...|....+++|..|||+.+++++ ..+.|+++.|...|++..
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i~~---~tvs~~l~~Le~~Gli~r 94 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKVTN---GNVSGLVNRLIKDGMVVK 94 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSSCC---SCHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCh---hhHHHHHHHHHHCCCEEe
Confidence 4456666744457999999999999955 899999999999999863
No 52
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=95.65 E-value=0.0074 Score=37.30 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=33.3
Q ss_pred HHHhhCCCCCCHHHHHHHhCCCCCCccc-HHHHHHHHHhcCccc
Q 041844 53 DIIHNHTKPMTLNQLLGALQIHPTKTRC-LHFLVCSLVRSGFFN 95 (97)
Q Consensus 53 D~La~~~gp~s~~ELA~~~g~~~~~~~~-L~RlLR~Laa~gif~ 95 (97)
..+..+++++|..|||+.+++++ .. +.|+++.|...|++.
T Consensus 22 ~~l~~~~~~~t~~eLa~~l~is~---~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 22 LEFEKKGYEPSLAEIVKASGVSE---KTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHHTTCCCCHHHHHHHHCCCH---HHHHTTHHHHHHHTTSEE
T ss_pred HHHHhcCCCCCHHHHHHHHCCCc---hHHHHHHHHHHHHCCCee
Confidence 34555545899999999999954 89 999999999999875
No 53
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=95.64 E-value=0.0072 Score=38.78 Aligned_cols=45 Identities=22% Similarity=0.168 Sum_probs=37.5
Q ss_pred hcChhHHHhhCC-CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHT-KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~-gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+..|...|..++ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 33 ~~~vL~~l~~~~~~~~t~~ela~~l~~~~---~tvs~~l~~Le~~Gli~ 78 (139)
T 3eco_A 33 QGHTLGYLYAHQQDGLTQNDIAKALQRTG---PTVSNLLRNLERKKLIY 78 (139)
T ss_dssp HHHHHHHHHHSTTTCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHhCCCc---ccHHHHHHHHHHCCCEe
Confidence 445556676665 6999999999999954 89999999999999986
No 54
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.63 E-value=0.0098 Score=38.05 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=36.4
Q ss_pred hcChhHHHhhCCC-CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTK-PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~g-p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+..|...|..+++ ++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l~~~~---~tvs~~l~~Le~~Gli~ 81 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEFSIKS---STATVLLQRMEIKKLLY 81 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCCCc---chHHHHHHHHHHCCCEE
Confidence 3445556666543 899999999999954 89999999999999885
No 55
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.62 E-value=0.011 Score=38.19 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=37.7
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|...|..+.+++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 36 ~~~~iL~~l~~~~~~~~~~~la~~l~i~~---~~vs~~l~~Le~~glv~ 81 (147)
T 2hr3_A 36 SQLVVLGAIDRLGGDVTPSELAAAERMRS---SNLAALLRELERGGLIV 81 (147)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHTTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCCCh---hhHHHHHHHHHHCCCEe
Confidence 34556666765347999999999999954 89999999999999885
No 56
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.55 E-value=0.01 Score=38.90 Aligned_cols=44 Identities=9% Similarity=0.178 Sum_probs=37.9
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|+..|.+ ++.|..|||+.+|+++ ..+.|.++.|...|++.
T Consensus 47 ~rl~IL~~L~~--~~~s~~ela~~lgis~---stvs~~L~~Le~~Glv~ 90 (122)
T 1r1t_A 47 NRLRLLSLLAR--SELCVGDLAQAIGVSE---SAVSHQLRSLRNLRLVS 90 (122)
T ss_dssp HHHHHHHHHTT--CCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeE
Confidence 56677888864 7899999999999954 89999999999999875
No 57
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.46 E-value=0.0094 Score=38.00 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=36.6
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 40 ~~~iL~~l~~~-~~~t~~ela~~l~~~~---~tvs~~l~~L~~~glv~ 83 (140)
T 2nnn_A 40 QWAALVRLGET-GPCPQNQLGRLTAMDA---ATIKGVVERLDKRGLIQ 83 (140)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHTTCCH---HHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEE
Confidence 45566667554 5999999999999954 89999999999999885
No 58
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=95.46 E-value=0.013 Score=38.75 Aligned_cols=45 Identities=18% Similarity=0.373 Sum_probs=37.9
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|...|.. ++++|..|||+.+|+++ ..+.|.++.|...|++.
T Consensus 4 ~~~~il~~L~~-~~~~~~~ela~~lg~s~---~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 4 IDLRILKILQY-NAKYSLDEIAREIRIPK---ATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHHHTT-CTTSCHHHHHHHHTSCH---HHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEE
Confidence 45567777865 46899999999999954 89999999999999886
No 59
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.45 E-value=0.013 Score=37.99 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=36.2
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~~~---~tvs~~l~~Le~~Glv~ 85 (148)
T 3nrv_A 42 EWRIISVLSSA-SDCSVQKISDILGLDK---AAVSRTVKKLEEKKYIE 85 (148)
T ss_dssp HHHHHHHHHHS-SSBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEE
Confidence 34455556554 5999999999999954 89999999999999986
No 60
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=95.44 E-value=0.0098 Score=40.15 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+++.|+.|||+.+++++ ..|.++|+.|...|++.
T Consensus 26 ~~~~s~~~IA~~~~i~~---~~l~kil~~L~~aGlv~ 59 (143)
T 3t8r_A 26 QGCISLKSIAEENNLSD---LYLEQLVGPLRNAGLIR 59 (143)
T ss_dssp SCCEEHHHHHHHTTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCEEE
Confidence 36899999999999955 89999999999999975
No 61
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=95.42 E-value=0.013 Score=38.12 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=32.2
Q ss_pred hcChhHHHhhCC-CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 48 QVGIPDIIHNHT-KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 48 eLgI~D~La~~~-gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
+..|...|..++ +++|..|||+.+++++ ..+.|+++.|...|++..
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~---~~vs~~l~~L~~~Glv~r 89 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGRRG---ASITSMLQGLEKKGYIER 89 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCC
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCh---hHHHHHHHHHHHCCCEEe
Confidence 344455566554 7999999999999955 899999999999999863
No 62
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.37 E-value=0.013 Score=37.54 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=36.3
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|....+++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l~~s~---~~vs~~l~~L~~~glv~ 83 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSVGVEG---PTLARLLDGLESQGLVR 83 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCCh---hhHHHHHHHHHHCCCee
Confidence 3445556633457999999999999954 89999999999999885
No 63
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.35 E-value=0.0078 Score=41.12 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
..+|.-- ..+.|...|.+ +++|+.|||+.+|+++ ..+.+-|+.|...|++..
T Consensus 52 l~aL~~p--~R~~IL~~L~~--~~~t~~eLa~~lgls~---stvs~hL~~L~~aGlV~~ 103 (151)
T 3f6v_A 52 LEVAAEP--TRRRLVQLLTS--GEQTVNNLAAHFPASR---SAISQHLRVLTEAGLVTP 103 (151)
T ss_dssp HHHHTSH--HHHHHHHHGGG--CCEEHHHHHTTSSSCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHhCCH--HHHHHHHHHHh--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEE
Confidence 3444455 67788888864 7999999999999954 899999999999999863
No 64
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.34 E-value=0.013 Score=37.65 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=36.6
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|...|. .+++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 38 ~~~~iL~~l~--~~~~~~~ela~~l~~s~---~tvs~~l~~Le~~glv~ 81 (146)
T 2gxg_A 38 LDFLVLRATS--DGPKTMAYLANRYFVTQ---SAITASVDKLEEMGLVV 81 (146)
T ss_dssp HHHHHHHHHT--TSCBCHHHHHHHTTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHh--cCCcCHHHHHHHhCCCc---hhHHHHHHHHHHCCCEE
Confidence 3445556676 57999999999999954 89999999999999886
No 65
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=95.34 E-value=0.017 Score=36.76 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=37.7
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|+..|.+ ++.|..|||+.+++++ ..+.|.++.|...|++.
T Consensus 33 ~~~~il~~L~~--~~~s~~ela~~l~is~---stvsr~l~~Le~~Glv~ 76 (119)
T 2lkp_A 33 SRLMILTQLRN--GPLPVTDLAEAIGMEQ---SAVSHQLRVLRNLGLVV 76 (119)
T ss_dssp HHHHHHHHHHH--CCCCHHHHHHHHSSCH---HHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHH--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 56677777876 6899999999999954 89999999999999874
No 66
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.30 E-value=0.0058 Score=39.62 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=37.3
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|...|.. ++.|..|||+.+|+++ ..+.|.|+.|...|++.
T Consensus 22 ~r~~IL~~L~~--~~~~~~eLa~~lgis~---stvs~~L~~L~~~GlV~ 65 (118)
T 2jsc_A 22 TRCRILVALLD--GVCYPGQLAAHLGLTR---SNVSNHLSCLRGCGLVV 65 (118)
T ss_dssp HHHHHHHHHHT--TCCSTTTHHHHHSSCH---HHHHHHHHHHTTTTSEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCceE
Confidence 55667777764 6899999999999954 89999999999999885
No 67
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=95.25 E-value=0.015 Score=37.48 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=36.0
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
.+..|...|..+ + +|..|||+.+++++ ..+.|+++.|...|++..
T Consensus 39 ~~~~iL~~l~~~-~-~t~~eLa~~l~~s~---~tvs~~l~~L~~~Glv~r 83 (146)
T 3tgn_A 39 TQEHILMLLSEE-S-LTNSELARRLNVSQ---AAVTKAIKSLVKEGMLET 83 (146)
T ss_dssp HHHHHHHHHTTC-C-CCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHhC-C-CCHHHHHHHHCCCH---HHHHHHHHHHHHCCCeEe
Confidence 344555666553 3 99999999999954 899999999999999863
No 68
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=95.25 E-value=0.02 Score=38.02 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=37.8
Q ss_pred HhcChhHHHhhCC-CCCCHHHHHHHhCC-C-CCCcccHHHHHHHHHhcCcccc
Q 041844 47 IQVGIPDIIHNHT-KPMTLNQLLGALQI-H-PTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 47 veLgI~D~La~~~-gp~s~~ELA~~~g~-~-~~~~~~L~RlLR~Laa~gif~e 96 (97)
.+.-|.+.|.+.+ ++.|+.||.+.+.- . .-+...++|.|..|+..|++.+
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 4455778887766 89999999999831 1 1155889999999999998863
No 69
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=95.25 E-value=0.016 Score=37.58 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=31.4
Q ss_pred CCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 58 HTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 58 ~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+++.|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 28 ~~~~~s~~ela~~l~is~---~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAP---SSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp TTSCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred cCCCcCHHHHHHHhCCCh---HHHHHHHHHHHHCCCEE
Confidence 457899999999999954 89999999999999885
No 70
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=95.21 E-value=0.02 Score=38.82 Aligned_cols=50 Identities=6% Similarity=0.153 Sum_probs=39.2
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCC--CCCCcccHHHHHHHHHhcCcccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQI--HPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~--~~~~~~~L~RlLR~Laa~gif~e 96 (97)
.+.-|.+.|...+++.|+.||.+.+.- +..+...++|.|..|+..|++.+
T Consensus 28 qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 28 QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 555678888777789999999999831 11155899999999999998853
No 71
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=95.13 E-value=0.02 Score=37.99 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=37.6
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+..|.+.|.++ +++|..|||+++|+++ ..+.|.++.|...|++.
T Consensus 6 ~d~~il~~L~~~-~~~s~~ela~~lg~s~---~tv~~~l~~L~~~G~i~ 50 (144)
T 2cfx_A 6 IDLNIIEELKKD-SRLSMRELGRKIKLSP---PSVTERVRQLESFGIIK 50 (144)
T ss_dssp HHHHHHHHHHHC-SCCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeE
Confidence 345667777664 6899999999999954 89999999999999875
No 72
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=95.13 E-value=0.017 Score=36.74 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=36.4
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++..
T Consensus 31 ~~~iL~~l~~~-~~~~~~ela~~l~~s~---~tvs~~l~~L~~~glv~~ 75 (138)
T 3bpv_A 31 QVACLLRIHRE-PGIKQDELATFFHVDK---GTIARTLRRLEESGFIER 75 (138)
T ss_dssp HHHHHHHHHHS-TTCBHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEe
Confidence 34455566554 7899999999999954 899999999999998863
No 73
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=95.11 E-value=0.016 Score=39.00 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
...++++. +.|.. + .+++.|+.|||+.+++++ ..|+++|+.|...|++.
T Consensus 13 ~~yAl~~L--~~La~----~-~~~~~~~~~iA~~~~i~~---~~l~kil~~L~~~Glv~ 61 (149)
T 1ylf_A 13 FSIAVHIL--SILKN----N-PSSLCTSDYMAESVNTNP---VVIRKIMSYLKQAGFVY 61 (149)
T ss_dssp HHHHHHHH--HHHHH----S-CGGGCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH--HHHHh----C-CCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEE
Confidence 34566766 54432 1 246899999999999955 99999999999999876
No 74
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=95.09 E-value=0.02 Score=38.05 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=37.4
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+..|...|..+ +++|..|||+.+|+++ ..+.|.++.|...|++.
T Consensus 8 ~~~~iL~~L~~~-~~~s~~ela~~lg~s~---~tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 8 IDRILVRELAAD-GRATLSELATRAGLSV---SAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 455666777653 6899999999999954 89999999999999884
No 75
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=95.07 E-value=0.02 Score=40.01 Aligned_cols=40 Identities=18% Similarity=0.436 Sum_probs=34.0
Q ss_pred HHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 53 DIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 53 D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+.+.+++.|.|..|||+.+|+++ ..++|.|+.|...|++.
T Consensus 16 ~~~~~~g~~~s~~eia~~lgl~~---~tv~~~l~~Le~~G~i~ 55 (196)
T 3k2z_A 16 EFIEKNGYPPSVREIARRFRITP---RGALLHLIALEKKGYIE 55 (196)
T ss_dssp HHHHHHSSCCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCCCCHHHHHHHcCCCc---HHHHHHHHHHHHCCCEE
Confidence 44556677999999999999954 57999999999999875
No 76
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=95.04 E-value=0.028 Score=37.19 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=36.3
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+..|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 48 q~~iL~~l~~~-~~~t~~eLa~~l~~~~---~tvs~~l~~Le~~Glv~ 91 (162)
T 3k0l_A 48 QFTALSVLAAK-PNLSNAKLAERSFIKP---QSANKILQDLLANGWIE 91 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCG---GGHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCcCeE
Confidence 33455566654 5899999999999955 89999999999999986
No 77
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=95.04 E-value=0.014 Score=39.29 Aligned_cols=46 Identities=20% Similarity=0.092 Sum_probs=37.6
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++.|...|...++++|..|||+.++++ ...+.|+++.|...|++..
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l~i~---~~tvs~~l~~Le~~GlV~r 100 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAIGIE---QPSLVRTLDQLEDKGLISR 100 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTSC---HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCC---HhhHHHHHHHHHHCCCEEe
Confidence 444555666656789999999999994 4899999999999999863
No 78
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.04 E-value=0.021 Score=36.23 Aligned_cols=44 Identities=14% Similarity=0.400 Sum_probs=36.1
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 35 ~~~iL~~l~~~-~~~~~~ela~~l~~~~---~tvs~~l~~L~~~gli~ 78 (139)
T 3bja_A 35 QFGVIQVLAKS-GKVSMSKLIENMGCVP---SNMTTMIQRMKRDGYVM 78 (139)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHCSSCC---TTHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCCh---hHHHHHHHHHHHCCCee
Confidence 44455566553 6899999999999955 89999999999999885
No 79
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=95.01 E-value=0.015 Score=39.41 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=37.1
Q ss_pred hcChhHHHhhCCCC--CCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 48 QVGIPDIIHNHTKP--MTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 48 eLgI~D~La~~~gp--~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++.|...|..+++| +|..|||+.+++++ ..+.|+++.|...|++..
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~is~---~tvs~~l~~Le~~GlV~r 118 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAISG---PSTSNRIVRLLEKGLIER 118 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSCCS---GGGSSHHHHHHHHTSEEC
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHCcCEEe
Confidence 44455667665544 99999999999955 899999999999998863
No 80
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.00 E-value=0.13 Score=33.38 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=36.0
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+..|...| . .+++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 40 q~~iL~~l-~-~~~~t~~eLa~~l~~~~---~~vs~~l~~Le~~Glv~ 82 (151)
T 3kp7_A 40 QSHVLNML-S-IEALTVGQITEKQGVNK---AAVSRRVKKLLNAELVK 82 (151)
T ss_dssp HHHHHHHH-H-HSCBCHHHHHHHHCSCS---SHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-H-cCCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEE
Confidence 33456667 3 47999999999999955 89999999999999986
No 81
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=94.97 E-value=0.035 Score=38.27 Aligned_cols=48 Identities=15% Similarity=0.420 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
..+|++. +.|.. + .++++|..|||+.+++++ ..|.++|+.|...|++.
T Consensus 12 ~yAlr~l--~~La~----~-~~~~~s~~~IA~~~~is~---~~l~kil~~L~~aGlv~ 59 (162)
T 3k69_A 12 SVAVHSI--LYLDA----H-RDSKVASRELAQSLHLNP---VMIRNILSVLHKHGYLT 59 (162)
T ss_dssp HHHHHHH--HHHHT----T-TTSCBCHHHHHHHHTSCG---GGTHHHHHHHHHTTSSE
T ss_pred HHHHHHH--HHHHh----C-CCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 3466666 44332 1 247899999999999965 99999999999999875
No 82
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=94.97 E-value=0.023 Score=37.88 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=37.7
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+..|.+.|.++ +++|..|||+.+|+++ ..+.|.++.|...|++.
T Consensus 8 ~~~~il~~L~~~-~~~s~~ela~~lg~s~---~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 8 IDKKIIKILQND-GKAPLREISKITGLAE---STIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHCSCH---HHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeE
Confidence 455667777664 6899999999999954 89999999999999875
No 83
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=94.92 E-value=0.023 Score=38.26 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=37.5
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+..|.+.|.++ +++|..|||+++|+++ ..+.|.++.|...|++.
T Consensus 11 ~~~~il~~L~~~-~~~s~~ela~~lg~s~---~tv~~~l~~L~~~G~i~ 55 (162)
T 2p5v_A 11 TDIKILQVLQEN-GRLTNVELSERVALSP---SPCLRRLKQLEDAGIVR 55 (162)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEe
Confidence 455667777664 6899999999999954 89999999999999875
No 84
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=94.90 E-value=0.025 Score=36.90 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=36.5
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+..|...|.. ++++|..|||+.+|+++ ..+.|.++.|...|++.
T Consensus 6 ~~~il~~L~~-~~~~~~~ela~~lg~s~---~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 6 DKIILEILEK-DARTPFTEIAKKLGISE---TAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTSCH---HHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEe
Confidence 4456677765 36899999999999954 89999999999999885
No 85
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=94.83 E-value=0.029 Score=37.59 Aligned_cols=47 Identities=6% Similarity=0.210 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
..++++. +.| +.+.+. |+.|||+.+++++ ..|.+||+.|...|++..
T Consensus 9 ~yAl~~L--~~L------a~~~~~-s~~~IA~~~~i~~---~~l~kIl~~L~~aGlv~s 55 (145)
T 1xd7_A 9 AVAIHIL--SLI------SMDEKT-SSEIIADSVNTNP---VVVRRMISLLKKADILTS 55 (145)
T ss_dssp HHHHHHH--HHH------HTCSCC-CHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHH--HHH------HhCCCC-CHHHHHHHHCcCH---HHHHHHHHHHHHCCceEe
Confidence 4466666 443 333345 9999999999955 999999999999999863
No 86
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=94.79 E-value=0.037 Score=35.55 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=30.1
Q ss_pred CCCC--HHHHHHHh-CCCCCCcccHHHHHHHHHhcCcccc
Q 041844 60 KPMT--LNQLLGAL-QIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 60 gp~s--~~ELA~~~-g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
|+.+ ..||++.+ |+.+ ..|.|.|+.|...|+++.
T Consensus 39 g~~~~~~~eL~~~l~gis~---~~ls~~L~~Le~~GlV~r 75 (111)
T 3df8_A 39 GSTRQNFNDIRSSIPGISS---TILSRRIKDLIDSGLVER 75 (111)
T ss_dssp SSSCBCHHHHHHTSTTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCHHHHHHHccCCCH---HHHHHHHHHHHHCCCEEE
Confidence 6777 99999999 8954 899999999999999863
No 87
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=94.75 E-value=0.026 Score=37.39 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=37.8
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+..|.+.|.. ++++|..|||+.+|+++ ..+.|.++.|...|++.
T Consensus 10 ~d~~il~~L~~-~~~~s~~ela~~lg~s~---~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 10 VDMQLVKILSE-NSRLTYRELADILNTTR---QRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHTTSCH---HHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 45567777876 47899999999999954 88999999999999875
No 88
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=94.74 E-value=0.016 Score=38.15 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=38.0
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHh--CCCCCCcccHHHHHHHHHhcCcccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGAL--QIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~--g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++-.|.+.|.++ |++|+.|||+.+ |+.+ ..+.+-++.|...|+++.
T Consensus 14 ~d~~IL~~L~~~-g~~s~~eLA~~l~~giS~---~aVs~rL~~Le~~GLV~~ 61 (111)
T 3b73_A 14 WDDRILEIIHEE-GNGSPKELEDRDEIRISK---SSVSRRLKKLADHDLLQP 61 (111)
T ss_dssp HHHHHHHHHHHH-SCBCHHHHHTSTTCCSCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHhcCCCH---HHHHHHHHHHHHCCCEEe
Confidence 455667778654 699999999999 8854 899999999999999863
No 89
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=94.73 E-value=0.027 Score=37.49 Aligned_cols=45 Identities=16% Similarity=0.357 Sum_probs=37.4
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+..|.+.|.++ +++|..|||+++|+++ ..+.|.++.|...|++.
T Consensus 9 ~d~~il~~L~~~-~~~s~~ela~~lg~s~---~tv~~~l~~L~~~G~i~ 53 (152)
T 2cg4_A 9 LDRGILEALMGN-ARTAYAELAKQFGVSP---ETIHVRVEKMKQAGIIT 53 (152)
T ss_dssp HHHHHHHHHHHC-TTSCHHHHHHHHTSCH---HHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHcCCcc
Confidence 345566777664 6899999999999954 89999999999999875
No 90
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=94.71 E-value=0.02 Score=35.11 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=36.8
Q ss_pred HhcChhHHHhhCC--CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHT--KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~--gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+-.|.+.|...+ +++|+.|||+++|++ ...+.|.|..|...|++.
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs---~~tV~~~L~~L~~~G~I~ 62 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGTP---KKEINRVLYSLAKKGKLQ 62 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCCC---HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcC---HHHHHHHHHHHHHCCCEE
Confidence 4455666776543 489999999999994 478999999999999874
No 91
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=94.71 E-value=0.022 Score=36.82 Aligned_cols=44 Identities=7% Similarity=0.073 Sum_probs=36.0
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+..|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 33 q~~iL~~l~~~-~~~t~~eLa~~l~~~~---~tvs~~l~~Le~~Glv~ 76 (145)
T 3g3z_A 33 LFAVLYTLATE-GSRTQKHIGEKWSLPK---QTVSGVCKTLAGQGLIE 76 (145)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEe
Confidence 44455566554 5799999999999954 89999999999999986
No 92
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=94.70 E-value=0.029 Score=38.09 Aligned_cols=45 Identities=9% Similarity=0.160 Sum_probs=38.2
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+..|.+.|.+ ++++|..|||+++|+++ ..+.|-++.|...|++.
T Consensus 4 ~d~~il~~L~~-~~~~s~~~la~~lg~s~---~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 4 LDRKILRILQE-DSTLAVADLAKKVGLST---TPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHTT-CSCSCHHHHHHHHTCCH---HHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCee
Confidence 45667788865 47999999999999955 89999999999999875
No 93
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=94.68 E-value=0.029 Score=36.76 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=37.0
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++.|...|.. .+++|..|||+.+++++ ..+.|+++.|...|++..
T Consensus 51 ~~~iL~~l~~-~~~~t~~ela~~l~is~---~tvs~~l~~Le~~glv~r 95 (162)
T 2fa5_A 51 EWRVITILAL-YPGSSASEVSDRTAMDK---VAVSRAVARLLERGFIRR 95 (162)
T ss_dssp HHHHHHHHHH-STTCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEee
Confidence 4455666765 36899999999999954 899999999999999863
No 94
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=94.67 E-value=0.014 Score=37.62 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=36.0
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+..|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 39 ~~~iL~~l~~~-~~~t~~eLa~~l~~~~---~~vs~~l~~L~~~Glv~ 82 (143)
T 3oop_A 39 QWSVLEGIEAN-EPISQKEIALWTKKDT---PTVNRIVDVLLRKELIV 82 (143)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCCH---hhHHHHHHHHHHCCCee
Confidence 34445556544 7999999999999954 89999999999999986
No 95
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=94.64 E-value=0.016 Score=36.70 Aligned_cols=43 Identities=21% Similarity=0.134 Sum_probs=35.3
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
...|-+.|... | +|+.|||+++|+.. ..++|.|..|...|++.
T Consensus 19 ~~~IL~lL~~~-g-~sa~eLAk~LgiSk---~aVr~~L~~Le~eG~I~ 61 (82)
T 1oyi_A 19 VCEAIKTIGIE-G-ATAAQLTRQLNMEK---REVNKALYDLQRSAMVY 61 (82)
T ss_dssp HHHHHHHHSSS-T-EEHHHHHHHSSSCH---HHHHHHHHHHHHHTSSE
T ss_pred HHHHHHHHHHc-C-CCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 34556777653 3 99999999999954 89999999999999875
No 96
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=94.64 E-value=0.021 Score=36.25 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=33.7
Q ss_pred hhHHHhhCCCCCCHHHHHHHh-CCCCCCcccHHHHHHHHHhcCcccc
Q 041844 51 IPDIIHNHTKPMTLNQLLGAL-QIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 51 I~D~La~~~gp~s~~ELA~~~-g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
|...|. .++++..||++.+ |+++ ..+.+.|+.|...|+++.
T Consensus 19 IL~~L~--~~~~~~~eLa~~l~~is~---~tls~~L~~Le~~GlI~r 60 (107)
T 2hzt_A 19 ILXHLT--HGKKRTSELKRLMPNITQ---KMLTQQLRELEADGVINR 60 (107)
T ss_dssp HHHHHT--TCCBCHHHHHHHCTTSCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHH--hCCCCHHHHHHHhcCCCH---HHHHHHHHHHHHCCCEEE
Confidence 334453 3799999999999 9954 899999999999999863
No 97
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=94.62 E-value=0.026 Score=36.05 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=32.9
Q ss_pred hHHHhhCCCCCCHHHHHHHh-CCCCCCcccHHHHHHHHHhcCccc
Q 041844 52 PDIIHNHTKPMTLNQLLGAL-QIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 52 ~D~La~~~gp~s~~ELA~~~-g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
...|.. ++++..|||+.+ ++++ ..+.|.++.|...|++.
T Consensus 28 L~~L~~--~~~~~~eLa~~l~~is~---~tvs~~L~~Le~~GlI~ 67 (112)
T 1z7u_A 28 MDELFQ--GTKRNGELMRALDGITQ---RVLTDRLREMEKDGLVH 67 (112)
T ss_dssp HHHHHH--SCBCHHHHHHHSTTCCH---HHHHHHHHHHHHHTSEE
T ss_pred HHHHHh--CCCCHHHHHHHhccCCH---HHHHHHHHHHHHCCCEE
Confidence 344544 789999999999 9944 89999999999999986
No 98
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=94.61 E-value=0.03 Score=37.48 Aligned_cols=50 Identities=10% Similarity=0.081 Sum_probs=39.0
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCC-CC-CCcccHHHHHHHHHhcCcccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQI-HP-TKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~-~~-~~~~~L~RlLR~Laa~gif~e 96 (97)
.+.-|.+.|.+.+++.|+.||.+.+.- .| -+...++|.|..|+..|++.+
T Consensus 15 qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 15 QRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 445677888776789999999999842 11 156889999999999998753
No 99
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=94.61 E-value=0.02 Score=38.19 Aligned_cols=45 Identities=16% Similarity=0.109 Sum_probs=34.6
Q ss_pred hcChhHHHhhC-CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNH-TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~-~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|..+ ++++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 48 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~---~tvs~~l~~Le~~Glv~ 93 (168)
T 3u2r_A 48 QYNTLRLLRSVHPEGMATLQIADRLISRA---PDITRLIDRLDDRGLVL 93 (168)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHC---C---THHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCCCh---hhHHHHHHHHHHCCCEe
Confidence 44455566665 37999999999999955 89999999999999986
No 100
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=94.60 E-value=0.023 Score=36.19 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=36.9
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 32 ~~~~iL~~l~~~-~~~~~~ela~~l~is~---~~vs~~l~~L~~~gli~ 76 (142)
T 3bdd_A 32 TRYSILQTLLKD-APLHQLALQERLQIDR---AAVTRHLKLLEESGYII 76 (142)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEE
Confidence 345566667654 5899999999999954 89999999999999875
No 101
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.53 E-value=0.027 Score=36.72 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=35.9
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|.. .+++|..|||+.++++ ...+.|+++.|...|++.
T Consensus 45 ~~~iL~~l~~-~~~~t~~ela~~l~i~---~~tvs~~l~~Le~~Glv~ 88 (155)
T 3cdh_A 45 EWRVLACLVD-NDAMMITRLAKLSLME---QSRMTRIVDQMDARGLVT 88 (155)
T ss_dssp HHHHHHHHSS-CSCBCHHHHHHHTTCC---HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHH-CCCcCHHHHHHHHCCC---HHHHHHHHHHHHHCCCEE
Confidence 3445555654 3689999999999994 489999999999999986
No 102
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=94.51 E-value=0.022 Score=36.86 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=36.1
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~~~---~~vs~~l~~Le~~Glv~ 85 (152)
T 3bj6_A 42 QRAILEGLSLT-PGATAPQLGAALQMKR---QYISRILQEVQRAGLIE 85 (152)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCee
Confidence 34455566654 5899999999999954 89999999999999886
No 103
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=94.50 E-value=0.016 Score=34.86 Aligned_cols=47 Identities=13% Similarity=0.340 Sum_probs=36.2
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCC-CCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHP-TKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~-~~~~~L~RlLR~Laa~gif~ 95 (97)
+..|.+.|.. .++.|..||++.++.++ -++..+.|+++.|...|++.
T Consensus 11 e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~ 58 (82)
T 1p6r_A 11 ELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALN 58 (82)
T ss_dssp HHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeE
Confidence 4455666665 47999999999997421 14588999999999999886
No 104
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=94.50 E-value=0.038 Score=34.41 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=36.7
Q ss_pred HhcChhHHHhhCC--CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHT--KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~--gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++-.|.+.|.+.+ .++|+.|||+++|++. ..+.|.|..|...|++.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr---~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPK---KEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 4555667776543 4799999999999943 78999999999999875
No 105
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.47 E-value=0.026 Score=37.01 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=37.1
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 45 ~~~~iL~~l~~~-~~~t~~ela~~l~is~---~tvs~~l~~Le~~Gli~ 89 (154)
T 2eth_A 45 TELYAFLYVALF-GPKKMKEIAEFLSTTK---SNVTNVVDSLEKRGLVV 89 (154)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHTTSCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEE
Confidence 355566667654 5899999999999944 89999999999999886
No 106
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.46 E-value=0.025 Score=36.23 Aligned_cols=44 Identities=23% Similarity=0.195 Sum_probs=36.0
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 35 ~~~iL~~l~~~-~~~~~~~la~~l~~s~---~tvs~~l~~L~~~glv~ 78 (145)
T 2a61_A 35 QFDILQKIYFE-GPKRPGELSVLLGVAK---STVTGLVKRLEADGYLT 78 (145)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCc---hhHHHHHHHHHHCCCee
Confidence 44455566553 6899999999999954 89999999999999885
No 107
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=94.39 E-value=0.036 Score=38.17 Aligned_cols=45 Identities=18% Similarity=0.354 Sum_probs=38.0
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++..|.+.|..+ +++|..|||+++|+++ ..+.|.++.|...|++.
T Consensus 18 ~d~~IL~~L~~~-~~~s~~eLA~~lglS~---~tv~~~l~~L~~~G~I~ 62 (171)
T 2ia0_A 18 LDRNILRLLKKD-ARLTISELSEQLKKPE---STIHFRIKKLQERGVIE 62 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 456677778764 6899999999999954 89999999999999875
No 108
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=94.39 E-value=0.027 Score=36.36 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=35.7
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 44 ~~~iL~~l~~~-~~~t~~ela~~l~~~~---~tvs~~l~~Le~~Glv~ 87 (150)
T 2rdp_A 44 QFVALQWLLEE-GDLTVGELSNKMYLAC---STTTDLVDRMERNGLVA 87 (150)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCc---hhHHHHHHHHHHCCCee
Confidence 34445556553 6899999999999954 89999999999999885
No 109
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=94.39 E-value=0.025 Score=36.30 Aligned_cols=44 Identities=9% Similarity=0.068 Sum_probs=36.0
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 31 ~~~iL~~l~~~-~~~t~~~la~~l~~s~---~~vs~~l~~Le~~gli~ 74 (144)
T 1lj9_A 31 QYLYLVRVCEN-PGIIQEKIAELIKVDR---TTAARAIKRLEEQGFIY 74 (144)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHC-cCcCHHHHHHHHCCCH---hHHHHHHHHHHHCCCEE
Confidence 34455566654 5899999999999954 89999999999999885
No 110
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=94.37 E-value=0.045 Score=38.62 Aligned_cols=44 Identities=25% Similarity=0.362 Sum_probs=38.4
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+..|...|.+ +++|..|||+.+|+++ ..+.|.++.|...|++.
T Consensus 21 ~~~~IL~~L~~--~~~s~~eLA~~lglS~---stv~~~l~~Le~~GlI~ 64 (192)
T 1uly_A 21 TRRKILKLLRN--KEMTISQLSEILGKTP---QTIYHHIEKLKEAGLVE 64 (192)
T ss_dssp HHHHHHHHHTT--CCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 66778888863 7999999999999954 89999999999999875
No 111
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=94.35 E-value=0.023 Score=36.63 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=35.3
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|..++ + |..|||+.+++++ ..+.|+++.|...|++.
T Consensus 39 ~~~iL~~l~~~~-~-~~~~la~~l~~~~---~tvs~~l~~Le~~Glv~ 81 (144)
T 3f3x_A 39 DFSILKATSEEP-R-SMVYLANRYFVTQ---SAITAAVDKLEAKGLVR 81 (144)
T ss_dssp HHHHHHHHHHSC-E-EHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHCC-C-CHHHHHHHHCCCh---hHHHHHHHHHHHCCCEE
Confidence 445566676654 4 9999999999954 89999999999999886
No 112
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=94.34 E-value=0.033 Score=36.22 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 21 ~~~~~~ela~~l~vs~---~tvs~~l~~Le~~Glv~ 53 (142)
T 1on2_A 21 GYARVSDIAEALAVHP---SSVTKMVQKLDKDEYLI 53 (142)
T ss_dssp SSCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEE
Confidence 6899999999999954 89999999999999885
No 113
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=94.28 E-value=0.042 Score=37.88 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=38.1
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+..|.+.|..+ +.+|..|||+++|+++ ..+.|-++.|...|++.
T Consensus 28 ~d~~IL~~L~~~-~~~s~~eLA~~lglS~---~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 28 IDKKIIKILQND-GKAPLREISKITGLAE---STIHERIRKLRESGVIK 72 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCeE
Confidence 566677778764 6899999999999954 88999999999999875
No 114
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=94.21 E-value=0.029 Score=37.98 Aligned_cols=50 Identities=8% Similarity=0.105 Sum_probs=38.3
Q ss_pred HhcChhHHHhhCC-CCCCHHHHHHHhCC-CC-CCcccHHHHHHHHHhcCcccc
Q 041844 47 IQVGIPDIIHNHT-KPMTLNQLLGALQI-HP-TKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 47 veLgI~D~La~~~-gp~s~~ELA~~~g~-~~-~~~~~L~RlLR~Laa~gif~e 96 (97)
.+.-|.+.|.+.+ ++.|+.||.+.+.- .| .+...++|.|+.|+..|++..
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 4455778887666 79999999999832 11 155889999999999998853
No 115
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=94.19 E-value=0.029 Score=36.50 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=36.8
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++..
T Consensus 43 ~~~iL~~l~~~-~~~t~~eLa~~l~~~~---~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 43 QLAMINVIYST-PGISVADLTKRLIITG---SSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEe
Confidence 44555566654 6899999999999954 899999999999998863
No 116
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=94.18 E-value=0.038 Score=35.44 Aligned_cols=44 Identities=11% Similarity=0.272 Sum_probs=36.2
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 39 ~~~iL~~l~~~-~~~~~~ela~~l~~~~---~tvs~~l~~L~~~gli~ 82 (142)
T 2bv6_A 39 QFLVLTILWDE-SPVNVKKVVTELALDT---GTVSPLLKRMEQVDLIK 82 (142)
T ss_dssp HHHHHHHHHHS-SEEEHHHHHHHTTCCT---TTHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCCh---hhHHHHHHHHHHCCCEE
Confidence 44555566654 5899999999999955 89999999999999885
No 117
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=94.09 E-value=0.029 Score=36.62 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=36.6
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
+..|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++..
T Consensus 43 q~~iL~~l~~~-~~~~~~eLa~~l~~~~---~~vs~~l~~L~~~Glv~r 87 (149)
T 4hbl_A 43 QYLVMLTLWEE-NPQTLNSIGRHLDLSS---NTLTPMLKRLEQSGWVKR 87 (149)
T ss_dssp HHHHHHHHHHS-SSEEHHHHHHHHTCCH---HHHHHHHHHHHHHTSEEC
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEee
Confidence 44445556554 7899999999999954 899999999999999863
No 118
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=94.01 E-value=0.04 Score=34.41 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=35.0
Q ss_pred ChhHHHhhCCCCCCHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCccc
Q 041844 50 GIPDIIHNHTKPMTLNQLLGALQIHPTKTR-CLHFLVCSLVRSGFFN 95 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~g~~~~~~~-~L~RlLR~Laa~gif~ 95 (97)
.|.+.|..+ ||.|+.|||+.+|+.+ . .++|.|..|...|++.
T Consensus 15 ~IL~~Lk~~-g~~ta~eiA~~Lgit~---~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 15 KICDYLFNV-SDSSALNLAKNIGLTK---ARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHT-CCEEHHHHHHHHCGGG---HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHc-CCcCHHHHHHHcCCCc---HHHHHHHHHHHHHCCCEE
Confidence 455667554 6999999999999954 7 8999999999999874
No 119
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=94.00 E-value=0.036 Score=35.26 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=35.4
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 36 ~~~iL~~l~~~-~~~~~~~la~~l~~~~---~tvs~~l~~L~~~gli~ 79 (138)
T 1jgs_A 36 QFKVLCSIRCA-ACITPVELKKVLSVDL---GALTRMLDRLVCKGWVE 79 (138)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHCCCh---HHHHHHHHHHHHCCCEE
Confidence 34445556543 6899999999999954 89999999999999886
No 120
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=93.97 E-value=0.034 Score=34.25 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=35.4
Q ss_pred hcChhHHHhhCCCCCCHHHH----HHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQL----LGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~EL----A~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++.|...|.. .+++|..|| |+.++++ +..+.|+++.|...|++..
T Consensus 10 q~~iL~~l~~-~~~~~~~el~~~la~~l~is---~~tvs~~l~~Le~~gli~r 58 (99)
T 1tbx_A 10 EAIVLAYLYD-NEGIATYDLYKKVNAEFPMS---TATFYDAKKFLIQEGFVKE 58 (99)
T ss_dssp HHHHHHHHTT-CTTCBHHHHHHHHHTTSCCC---HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHH-cCCcCHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCEEE
Confidence 3445555654 368999999 8888994 4899999999999998863
No 121
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=93.93 E-value=0.035 Score=36.55 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=37.3
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCC-CCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHP-TKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~-~~~~~L~RlLR~Laa~gif~ 95 (97)
.+..|...|..+.+++|..||++.++.++ -++..+.|++.-|...|++.
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~ 59 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVL 59 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEE
Confidence 34455666765447999999999998321 14589999999999999886
No 122
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=93.93 E-value=0.039 Score=37.89 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=38.0
Q ss_pred HhcChhHHHhhC-CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNH-TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~-~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+..|...|..+ ++++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 42 ~q~~vL~~L~~~~~~~~t~~eLa~~l~is~---~tvs~~l~~Le~~GlV~ 88 (189)
T 3nqo_A 42 RQYMTILSILHLPEEETTLNNIARKMGTSK---QNINRLVANLEKNGYVD 88 (189)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEE
Confidence 455566667654 37999999999999954 89999999999999986
No 123
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.89 E-value=0.028 Score=35.79 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=36.5
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 37 ~~~~iL~~l~~~-~~~t~~ela~~l~~s~---~~vs~~l~~Le~~glv~ 81 (142)
T 2fbi_A 37 QQWRVIRILRQQ-GEMESYQLANQACILR---PSMTGVLARLERDGIVR 81 (142)
T ss_dssp HHHHHHHHHHHH-CSEEHHHHHHHTTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCH---hHHHHHHHHHHHCCCEE
Confidence 345555666553 5899999999999954 89999999999999885
No 124
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=93.85 E-value=0.021 Score=36.80 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=36.1
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++..
T Consensus 42 ~~~iL~~l~~~-~~~~~~~la~~l~~~~---~tvs~~l~~L~~~glv~r 86 (147)
T 1z91_A 42 QYLALLLLWEH-ETLTVKKMGEQLYLDS---GTLTPMLKRMEQQGLITR 86 (147)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHTTTCCH---HHHHHHHHHHHHHTSEEC
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCc---CcHHHHHHHHHHCCCEEe
Confidence 44455556554 5899999999999954 899999999999998863
No 125
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=93.84 E-value=0.035 Score=36.52 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=35.3
Q ss_pred cChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 49 VGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 49 LgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
..|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 53 ~~vL~~l~~~-~~~t~~eLa~~l~~~~---~tvs~~l~~Le~~Glv~ 95 (159)
T 3s2w_A 53 FPFLMRLYRE-DGINQESLSDYLKIDK---GTTARAIQKLVDEGYVF 95 (159)
T ss_dssp HHHHHHHHHS-CSEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEE
Confidence 3344556554 7899999999999954 89999999999999986
No 126
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=93.80 E-value=0.042 Score=39.19 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=37.7
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
..+.|...|.. +|+|..|||+.+|+++ ..+++.|+.|...|++..
T Consensus 16 ~rl~IL~~L~~--~~~s~~eLa~~l~is~---stvs~hLk~Le~~GLV~~ 60 (202)
T 2p4w_A 16 TRRRILFLLTK--RPYFVSELSRELGVGQ---KAVLEHLRILEEAGLIES 60 (202)
T ss_dssp HHHHHHHHHHH--SCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCceEE
Confidence 55566667754 7999999999999954 899999999999999863
No 127
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=93.74 E-value=0.038 Score=36.28 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=36.5
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 54 ~~~iL~~l~~~-~~~t~~ela~~l~is~---~tvs~~l~~Le~~Gli~ 97 (162)
T 3cjn_A 54 KMRALAILSAK-DGLPIGTLGIFAVVEQ---STLSRALDGLQADGLVR 97 (162)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCh---hHHHHHHHHHHHCCCEE
Confidence 44556667654 6899999999999954 89999999999999885
No 128
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=93.74 E-value=0.039 Score=35.87 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=35.9
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|..+ +++|..|||+.++++ ...+.|+++.|...|++.
T Consensus 49 ~~~iL~~l~~~-~~~t~~ela~~l~~s---~~tvs~~l~~Le~~glv~ 92 (153)
T 2pex_A 49 QYLVMLVLWET-DERSVSEIGERLYLD---SATLTPLLKRLQAAGLVT 92 (153)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTCC---HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhC-CCcCHHHHHHHhCCC---cccHHHHHHHHHHCCCEe
Confidence 34455556554 689999999999994 489999999999999886
No 129
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=93.71 E-value=0.029 Score=37.53 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=36.3
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 47 ~~~iL~~L~~~-~~~t~~eLa~~l~is~---~tvs~~l~~Le~~GlV~ 90 (168)
T 2nyx_A 47 QFRTLVILSNH-GPINLATLATLLGVQP---SATGRMVDRLVGAELID 90 (168)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHHTSCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEE
Confidence 44555666554 5899999999999954 89999999999999986
No 130
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=93.69 E-value=0.063 Score=35.73 Aligned_cols=41 Identities=20% Similarity=0.098 Sum_probs=34.2
Q ss_pred hHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 52 PDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 52 ~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
--.|...+++.+..|||+.+++++ ..+.|++..|...|++.
T Consensus 37 L~~L~~~~~~~~~~eLa~~l~~~~---~tvs~~v~~Le~~GlV~ 77 (151)
T 4aik_A 37 LYNINRLPPEQSQIQLAKAIGIEQ---PSLVRTLDQLEEKGLIT 77 (151)
T ss_dssp HHHHHHSCTTSCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCcHHHHHHHHCcCH---HHHHHHHHHHHhCCCeE
Confidence 334555567789999999999954 89999999999999885
No 131
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=93.67 E-value=0.026 Score=37.34 Aligned_cols=44 Identities=16% Similarity=0.112 Sum_probs=35.8
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 55 q~~vL~~l~~~-~~~t~~eLa~~l~~~~---~~vs~~l~~Le~~Glv~ 98 (161)
T 3e6m_A 55 KLRLLSSLSAY-GELTVGQLATLGVMEQ---STTSRTVDQLVDEGLAA 98 (161)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEE
Confidence 33455556554 5899999999999954 89999999999999986
No 132
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=93.43 E-value=0.054 Score=35.95 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+++|..|||+.+++++ ..+.|++..|...|++.
T Consensus 51 ~~~t~~eLa~~l~~~~---~tvsr~v~~Le~~glVr 83 (148)
T 4fx0_A 51 IDLTMSELAARIGVER---TTLTRNLEVMRRDGLVR 83 (148)
T ss_dssp ---CHHHHHHHHTCCH---HHHHHHHHHHHHTTSBC
T ss_pred CCcCHHHHHHHHCCCh---hhHHHHHHHHHHCCCEE
Confidence 5799999999999954 89999999999999884
No 133
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=93.33 E-value=0.02 Score=35.41 Aligned_cols=32 Identities=0% Similarity=0.100 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFF 94 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif 94 (97)
+++|..|||+.+++++ ..+.|++..|...|++
T Consensus 29 ~~~t~~eLa~~l~i~~---~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 29 NDVYIQYIASKVNSPH---SYVWLIIKKFEEAKMV 60 (95)
T ss_dssp CCEEHHHHHHHSSSCH---HHHHHHHHHHHHTTSE
T ss_pred CCcCHHHHHHHHCcCH---HHHHHHHHHHHHCcCc
Confidence 3499999999999954 8999999999999987
No 134
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=93.29 E-value=0.07 Score=35.79 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
|+++..||++.+|+++ ..|.+.|+.|...|+++.
T Consensus 36 g~~~~~eLa~~lgis~---~tls~~L~~Le~~GlI~r 69 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAK---NILAARLRNLVEHGVMVA 69 (146)
T ss_dssp TCCSHHHHHHHHCCCH---HHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEEE
Confidence 7899999999999954 899999999999999863
No 135
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=93.23 E-value=0.033 Score=35.75 Aligned_cols=48 Identities=8% Similarity=0.151 Sum_probs=37.6
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCC-CCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHP-TKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~-~~~~~L~RlLR~Laa~gif~ 95 (97)
.+..|-+.|.+ .+++|+.||++.++.++ -++..+.|+|.-|...|++.
T Consensus 36 ~e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~ 84 (99)
T 2k4b_A 36 AELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLS 84 (99)
T ss_dssp SCSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEE
Confidence 45566677765 36999999999998631 14578999999999999886
No 136
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.22 E-value=0.031 Score=36.27 Aligned_cols=44 Identities=9% Similarity=0.311 Sum_probs=35.8
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|...|..+ +++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 39 ~~~iL~~l~~~-~~~t~~ela~~l~~s~---~tvs~~l~~Le~~glv~ 82 (155)
T 1s3j_A 39 QLFVLASLKKH-GSLKVSEIAERMEVKP---SAVTLMADRLEQKNLIA 82 (155)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHHTSCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEe
Confidence 34455566553 5899999999999954 89999999999999885
No 137
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=93.17 E-value=0.054 Score=41.11 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 36 INSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 36 ~~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
..+.+++.. .+..|.+.|. .+++|-.|||+.+|..+ ..+.++++.|...|++.|
T Consensus 12 ~~~~~~~~~--~~~~il~~l~--~~~~sr~~la~~~gls~---~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 12 HMPKSVRAE--NISRILKRIM--KSPVSRVELAEELGLTK---TTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp ------------CCCSHHHHH--HSCBCHHHHHHHHTCCH---HHHHHHHHHHHHHTSEEE
T ss_pred cCchhHHHH--HHHHHHHHHH--cCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEe
Confidence 346778877 8888999997 37999999999999954 899999999999999875
No 138
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=93.14 E-value=0.032 Score=36.04 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=33.7
Q ss_pred hhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 51 IPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 51 I~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|...|.. .+++|..|||+.+++++ ..+.|+++.|...|++.
T Consensus 41 vL~~l~~-~~~~t~~eLa~~l~~~~---~tvs~~l~~L~~~Glv~ 81 (140)
T 3hsr_A 41 VLMAIEN-DEKLNIKKLGERVFLDS---GTLTPLLKKLEKKDYVV 81 (140)
T ss_dssp HHHHSCT-TCEEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHH-cCCcCHHHHHHHHCCCh---hhHHHHHHHHHHCCCeE
Confidence 3344443 37899999999999954 89999999999999886
No 139
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=93.05 E-value=0.036 Score=35.77 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=36.4
Q ss_pred hcChhHHHhhC-CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 48 QVGIPDIIHNH-TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 48 eLgI~D~La~~-~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
+..|...|..+ ++++|..|||+.+++++ ..+.|++..|...|++..
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~---~tvs~~l~~Le~~Glv~r 85 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNYKQ---PQVVKAVKILSQEDYFDK 85 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSSHH---HHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEe
Confidence 33444556554 26899999999999954 899999999999999863
No 140
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=93.01 E-value=0.093 Score=31.41 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=38.4
Q ss_pred cChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 49 VGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 49 LgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
-.|-|-|.++||-+.++..++..|++ .+-+..+||-|...|+++
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV~---kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGVE---KQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCCC---HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCCC---HHHHHHHHHHHHHCCCee
Confidence 34567788888999999999999994 489999999999999875
No 141
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=92.97 E-value=0.055 Score=41.00 Aligned_cols=40 Identities=8% Similarity=0.061 Sum_probs=35.6
Q ss_pred ChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 50 GIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
||+..| + +|.|+.|||..+|.++ ..++++|+.|++.|+++
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~~~---~~v~~~L~~l~~~gll~ 86 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEEPL---PLVVAILESLNELGYVT 86 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHh-c--CCCCHHHHHHHhCCCh---HHHHHHHHHHhhCCcEE
Confidence 778888 4 6999999999999954 89999999999999875
No 142
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=92.97 E-value=0.063 Score=39.37 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=36.1
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++.|...|..+ +++|..|||+.+|+++ ..+.|+++.|...|++..
T Consensus 154 ~~~IL~~L~~~-~~~s~~eLA~~lglsk---sTv~r~L~~Le~~GlV~r 198 (244)
T 2wte_A 154 EMKLLNVLYET-KGTGITELAKMLDKSE---KTLINKIAELKKFGILTQ 198 (244)
T ss_dssp HHHHHHHHHHH-TCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEE
Confidence 34455555543 6899999999999954 899999999999998863
No 143
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=92.84 E-value=0.073 Score=33.56 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHhC-CCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPMTLNQLLGALQ-IHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~s~~ELA~~~g-~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++++..||++.++ +++ ..+.+.|+.|...|+++
T Consensus 36 ~~~~~~~eL~~~l~gis~---~~ls~~L~~Le~~GlV~ 70 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISE---KMLIDELKFLCGKGLIK 70 (107)
T ss_dssp TSCEEHHHHHHHSTTCCH---HHHHHHHHHHHHTTSEE
T ss_pred hCCcCHHHHHHHcccCCH---HHHHHHHHHHHHCCCEE
Confidence 37999999999995 844 89999999999999986
No 144
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=92.62 E-value=0.053 Score=35.96 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHh-CCCCCCcccHHHHHHHHHhcCcccc
Q 041844 60 KPMTLNQLLGAL-QIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 60 gp~s~~ELA~~~-g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++++..||++.+ |+++ ..|.+.|+.|...|+++.
T Consensus 47 g~~~~~eLa~~l~gis~---~tls~~L~~Le~~GlV~r 81 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSE---XMLAQSLQALEQDGFLNR 81 (131)
T ss_dssp CCEEHHHHHHHSTTCCH---HHHHHHHHHHHHHTCEEE
T ss_pred CCCCHHHHHHHhccCCH---HHHHHHHHHHHHCCcEEE
Confidence 799999999999 6944 899999999999999863
No 145
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=92.55 E-value=0.047 Score=36.06 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++++|..|||+.+++++ ..+.|++.-|...|++.
T Consensus 49 ~~~~t~~eLa~~l~~~~---~tvs~~v~~Le~~Glv~ 82 (147)
T 4b8x_A 49 SGELPMSKIGERLMVHP---TSVTNTVDRLVRSGLVA 82 (147)
T ss_dssp GGEEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCCcCHHHHHHHHCCCH---HHHHHHHHHHHhCCCEE
Confidence 37899999999999954 89999999999999986
No 146
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=92.49 E-value=0.068 Score=33.85 Aligned_cols=43 Identities=9% Similarity=0.026 Sum_probs=34.6
Q ss_pred ChhHHHhhCC-CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 50 GIPDIIHNHT-KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 50 gI~D~La~~~-gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.|...|..++ ..++..||+.+++++. ..+.|+|+.|...|++.
T Consensus 24 ~Vl~~I~~~g~~gi~qkeLa~~~~l~~---~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 24 LVYQIIEDAGNKGIWSRDVRYKSNLPL---TEINKILKNLESKKLIK 67 (91)
T ss_dssp HHHHHHHHHCTTCEEHHHHHHHTTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEE
Confidence 3445555433 5799999999999954 89999999999999886
No 147
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=92.47 E-value=0.11 Score=34.78 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=37.0
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCC-CC-CCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQI-HP-TKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~-~~-~~~~~L~RlLR~Laa~gif~ 95 (97)
.+.-|.+.|.+++ +.|+.||.+.+.- .| .+...++|.|..|+..|++.
T Consensus 20 qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 20 QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 4455677777666 9999999998743 12 25688999999999999875
No 148
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=92.46 E-value=0.038 Score=35.01 Aligned_cols=45 Identities=20% Similarity=0.400 Sum_probs=33.9
Q ss_pred ChhHHHhhCCCCCCHHHHHHHhCCCC-CCcccHHHHHHHHHhcCccc
Q 041844 50 GIPDIIHNHTKPMTLNQLLGALQIHP-TKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~g~~~-~~~~~L~RlLR~Laa~gif~ 95 (97)
.|...|.. .+++|..|||+.++.++ -.+..+.|++..|...|++.
T Consensus 14 ~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~ 59 (123)
T 1okr_A 14 EVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFID 59 (123)
T ss_dssp HHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeE
Confidence 34445544 37899999999998420 03489999999999999885
No 149
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=92.30 E-value=0.15 Score=35.01 Aligned_cols=50 Identities=6% Similarity=-0.068 Sum_probs=39.1
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCC---C-CCcccHHHHHHHHHhcCcccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIH---P-TKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~---~-~~~~~L~RlLR~Laa~gif~e 96 (97)
.+.-|.+.|.+.+++.|+.||.+.+.-. | .+...++|.|..|+..|++.+
T Consensus 34 qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 34 QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4556788887777899999999887321 1 256789999999999998763
No 150
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=92.30 E-value=0.11 Score=32.81 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=35.2
Q ss_pred ChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcc
Q 041844 50 GIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFF 94 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif 94 (97)
.|.+.|.++|+|++..|||+.+|++ ..-+.++|..|-..|.+
T Consensus 23 kVLe~LkeaG~PlkageIae~~Gvd---KKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQAP---KRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTSC---HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHcCCc
Confidence 4567788888999999999999994 47799999998877754
No 151
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=92.29 E-value=0.11 Score=34.19 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=32.6
Q ss_pred HHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 53 DIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 53 D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
..|.. +++.|..+||+.+|+++ ..+.|.++.|...|++.
T Consensus 47 ~~l~~-~~~~~~~~la~~l~vs~---~tvs~~l~~Le~~Glv~ 85 (155)
T 2h09_A 47 DLIRE-VGEARQVDMAARLGVSQ---PTVAKMLKRLATMGLIE 85 (155)
T ss_dssp HHHHH-HSCCCHHHHHHHHTSCH---HHHHHHHHHHHHTTCEE
T ss_pred HHHHh-CCCcCHHHHHHHhCcCH---HHHHHHHHHHHHCCCEE
Confidence 34544 36799999999999954 89999999999999875
No 152
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=92.16 E-value=0.071 Score=33.31 Aligned_cols=44 Identities=14% Similarity=0.372 Sum_probs=34.0
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++.|...+..+ +++|+.|||+.+|+++ ..+.|-++.|... ++.
T Consensus 28 ~Rl~IL~~l~~~-~~~~~~ela~~l~is~---stvs~hL~~L~~~-lv~ 71 (99)
T 2zkz_A 28 MRLKIVNELYKH-KALNVTQIIQILKLPQ---STVSQHLCKMRGK-VLK 71 (99)
T ss_dssp HHHHHHHHHHHH-SCEEHHHHHHHHTCCH---HHHHHHHHHHBTT-TBE
T ss_pred HHHHHHHHHHHC-CCcCHHHHHHHHCcCH---HHHHHHHHHHHHH-hhh
Confidence 555666433322 7899999999999954 8999999999887 764
No 153
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=91.94 E-value=0.064 Score=37.36 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=36.7
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhC-CCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQ-IHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g-~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+.+.|...|.+ +|+|+.||++.++ ++ ...+++-|+.|...|+++
T Consensus 24 ~Rl~il~~L~~--~~~~~~~l~~~l~~~~---~~~~s~Hl~~L~~aglv~ 68 (182)
T 4g6q_A 24 LRWRITQLLIG--RSLTTRELAELLPDVA---TTTLYRQVGILVKAGVLM 68 (182)
T ss_dssp HHHHHHHHTTT--SCEEHHHHHHHCTTBC---HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHhcCCC---HHHHHHHHHHHHHCCCeE
Confidence 56677788854 8999999999996 63 368999999999999986
No 154
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=91.80 E-value=0.17 Score=35.04 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=37.3
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGF 93 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gi 93 (97)
-...|.+.|.+.++++|..|||+.+|++. ..++|=++.|...|+
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~---~Ti~rdi~~L~~~G~ 65 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSR---QVIVQDIAYLRSLGY 65 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCH---HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCC
Confidence 45567788876667899999999999954 889999999999887
No 155
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=91.74 E-value=0.1 Score=34.95 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHh-CCCCCCcccHHHHHHHHHhcCcccc
Q 041844 59 TKPMTLNQLLGAL-QIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 59 ~gp~s~~ELA~~~-g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
.|+++..||++.+ |+++ ..|.+.|+.|...|+++.
T Consensus 37 ~g~~rf~eL~~~l~gIs~---~~Ls~~L~~Le~~GLV~R 72 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQ---RMLTLQLRELEADGIVHR 72 (131)
T ss_dssp TSCBCHHHHHHHCTTSCH---HHHHHHHHHHHHTTSEEE
T ss_pred cCCcCHHHHHHHhcccCH---HHHHHHHHHHHHCCCEEE
Confidence 3799999999999 8854 899999999999999863
No 156
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=90.96 E-value=0.19 Score=35.63 Aligned_cols=35 Identities=11% Similarity=0.241 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 58 HTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 58 ~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++++|..+||+.+++++ ..+.|+++.|...|++.
T Consensus 17 ~~~~~~~~~lA~~l~vs~---~tvs~~l~~Le~~GlV~ 51 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSP---PAVTEMMKKLLAEELLI 51 (214)
T ss_dssp SCSCCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred cCCCcCHHHHHHHHCCCh---hHHHHHHHHHHHCCCEE
Confidence 458999999999999954 89999999999999885
No 157
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=90.90 E-value=0.21 Score=32.22 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=34.5
Q ss_pred ChhHHHhhCCCCCCHHHHHH-HhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 50 GIPDIIHNHTKPMTLNQLLG-ALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~-~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.|.=.|++++ +.|+.+||+ ..+. |...+.|=++.|...|+++
T Consensus 20 siL~~L~~~~-~~t~~~Lae~~l~~---drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 20 TILITIAKKD-FITAAEVREVHPDL---GNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp HHHHHHHHST-TBCHHHHHHTCTTS---CHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHCC-CCCHHHHHHHHhcc---cHHHHHHHHHHHHHCCCee
Confidence 3444566665 999999999 9888 5589999999999999874
No 158
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=90.83 E-value=0.11 Score=32.93 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=35.8
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCC-CCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHP-TKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~-~~~~~L~RlLR~Laa~gif~ 95 (97)
+..|...|.++ +|+|..|||+.++.+. -++..+.+++.-|...|++.
T Consensus 12 q~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~ 59 (126)
T 1sd4_A 12 EWDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIK 59 (126)
T ss_dssp HHHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceE
Confidence 34445556554 6899999999998531 14589999999999999886
No 159
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=90.78 E-value=0.23 Score=37.72 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=38.4
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
-+..|.+.|.++ +++|-.|||+.+|+.+ ..+.++++.|...|++.|
T Consensus 17 n~~~il~~l~~~-~~~sr~~la~~~~ls~---~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 17 NAGAVYRLIDQL-GPVSRIDLSRLAQLAP---ASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHHSS-CSCCHHHHHHHTTCCH---HHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCcEEe
Confidence 344567777654 7999999999999954 899999999999999876
No 160
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=90.75 E-value=0.24 Score=31.82 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+++++..|||+.+++ +...|.|.+..|...|+++
T Consensus 34 g~~~s~~eLa~~l~l---~~stLsR~l~rLe~~GLV~ 67 (96)
T 2obp_A 34 ATPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLAD 67 (96)
T ss_dssp CCCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEE
T ss_pred CCCcCHHHHHHHhCC---chhhHHHHHHHHHHCCCEE
Confidence 478999999999999 4489999999999999875
No 161
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=90.67 E-value=0.11 Score=36.45 Aligned_cols=43 Identities=12% Similarity=0.069 Sum_probs=35.0
Q ss_pred cChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 49 VGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 49 LgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
..|...|..+ +++|..|||+.++++ +..+.|+++.|...|++.
T Consensus 51 ~~iL~~L~~~-~~~t~~eLa~~l~i~---~stvs~~l~~Le~~GlV~ 93 (207)
T 2fxa_A 51 HHILWIAYQL-NGASISEIAKFGVMH---VSTAFNFSKKLEERGYLR 93 (207)
T ss_dssp HHHHHHHHHH-TSEEHHHHHHHTTCC---HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHC-CCcCHHHHHHHHCCC---HHHHHHHHHHHHHCCCEE
Confidence 3344455544 589999999999995 489999999999999885
No 162
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=90.60 E-value=0.14 Score=37.41 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=35.9
Q ss_pred cChhHHHhhCC-CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 49 VGIPDIIHNHT-KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 49 LgI~D~La~~~-gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
..|...|..++ +++|..|||+.+++++ ..+.|++.-|...|++.
T Consensus 161 ~~vL~~L~~~~~~~~t~~eLa~~l~i~~---~tvt~~v~rLe~~GlV~ 205 (250)
T 1p4x_A 161 FTILAIITSQNKNIVLLKDLIETIHHKY---PQTVRALNNLKKQGYLI 205 (250)
T ss_dssp HHHHHHHHTTTTCCEEHHHHHHHSSSCH---HHHHHHHHHHHHHTSSE
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCCCh---hhHHHHHHHHHHCCCEE
Confidence 34455566655 3699999999999954 89999999999999886
No 163
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=90.32 E-value=0.16 Score=33.89 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=29.3
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++|-.+||+.+|+.+ ..+.|+++.|...|+++
T Consensus 164 ~~t~~~lA~~lg~sr---~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 164 KITRQEIGRIVGCSR---EMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp ECCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEE
Confidence 589999999999955 89999999999999875
No 164
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=90.25 E-value=0.21 Score=33.62 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=29.6
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++|-.+||+.+|+.+ ..+.|+++.|...|+++
T Consensus 169 ~~t~~~lA~~lg~sr---~tvsR~l~~L~~~g~I~ 200 (220)
T 3dv8_A 169 KITHETIANHLGSHR---EVITRMLRYFQVEGLVK 200 (220)
T ss_dssp CCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEE
Confidence 899999999999955 89999999999999875
No 165
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=90.01 E-value=0.33 Score=31.80 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=29.3
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
..|.++||+.+++++ ..+.|+++.|...|++..
T Consensus 51 ~ps~~~LA~~l~~s~---~~V~~~l~~Le~kGlI~~ 83 (128)
T 2vn2_A 51 FPTPAELAERMTVSA---AECMEMVRRLLQKGMIAI 83 (128)
T ss_dssp SCCHHHHHHTSSSCH---HHHHHHHHHHHHTTSSEE
T ss_pred CCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEE
Confidence 379999999999944 899999999999999863
No 166
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.81 E-value=0.16 Score=32.80 Aligned_cols=46 Identities=9% Similarity=0.016 Sum_probs=36.9
Q ss_pred hcChhHHHhhCC-CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 48 QVGIPDIIHNHT-KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 48 eLgI~D~La~~~-gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
|.-|..+|.++| ..++..||..+++++. ..+.|+++.|...|++..
T Consensus 39 E~lVy~~I~~aGn~GIw~kdL~~~tnL~~---~~vtkiLK~LE~k~lIK~ 85 (95)
T 2yu3_A 39 EKLVYQIIEDAGNKGIWSRDVRYKSNLPL---TEINKILKNLESKKLIKA 85 (95)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHHTCCH---HHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHhCCCH---HHHHHHHHHHHhCCCEEE
Confidence 444566666554 6799999999999955 889999999999998753
No 167
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=89.78 E-value=0.24 Score=33.77 Aligned_cols=33 Identities=6% Similarity=0.138 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
-++|-.+||+.+|+.+ ..+.|+|+.|...|+++
T Consensus 174 ~~~t~~~iA~~lg~sr---~tvsR~l~~L~~~g~I~ 206 (231)
T 3e97_A 174 LPLGTQDIMARTSSSR---ETVSRVLKRLEAHNILE 206 (231)
T ss_dssp ECCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHhCCcH---HHHHHHHHHHHHCCcEE
Confidence 3789999999999955 89999999999999876
No 168
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=89.57 E-value=0.32 Score=33.71 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=35.2
Q ss_pred hcChhHHHhhCC-CCCCHHHHHHHhC-CCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHT-KPMTLNQLLGALQ-IHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~-gp~s~~ELA~~~g-~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+.|...|..+. ++.|+.||++.++ +. ...++|-|+.|+..|+++
T Consensus 31 R~~IL~~Ll~~p~~~~ta~eL~~~l~~lS---~aTVyrhL~~L~eaGLV~ 77 (151)
T 3u1d_A 31 RLDVLHQILAQPDGVLSVEELLYRNPDET---EANLRYHVDELVDRGIVE 77 (151)
T ss_dssp HHHHHHHHHHSTTSCBCHHHHHHHCTTSC---HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHhcCCCC---HHHHHHHHHHHHHCCCeE
Confidence 344555554443 6789999999988 73 489999999999999986
No 169
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=89.55 E-value=0.21 Score=33.42 Aligned_cols=32 Identities=6% Similarity=0.040 Sum_probs=29.4
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++|-.+||+.+|+.+ ..+.|+++.|...|+++
T Consensus 167 ~~t~~~iA~~lg~sr---~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGCSR---ETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCcH---HHHHHHHHHHHHCCcEE
Confidence 689999999999955 89999999999999875
No 170
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=89.45 E-value=0.28 Score=37.70 Aligned_cols=50 Identities=12% Similarity=0.216 Sum_probs=40.8
Q ss_pred HHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 41 LKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 41 L~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
+|.. -+..|.+.|.++ +++|-.|||+.+|+.+ ..+.++++.|...|++.|
T Consensus 36 ~r~~--n~~~il~~l~~~-~~~sr~ela~~~gls~---~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 36 IKQI--NAGRVYKLIDQK-GPISRIDLSKESELAP---ASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHH--HHHHHHHHHHHH-CSBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHH--HHHHHHHHHHHc-CCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEe
Confidence 4444 455677888664 7999999999999954 899999999999999875
No 171
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=89.42 E-value=0.062 Score=39.31 Aligned_cols=45 Identities=7% Similarity=0.094 Sum_probs=38.3
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
..+.|...|.. +|+|..|||+.+|+.+ ..+.+.|+.|...|++..
T Consensus 13 ~R~~IL~~L~~--g~~s~~ELa~~lglS~---stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 13 VRRDLLSHLTC--MECYFSLLSSKVSVSS---TAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHHHHTT--TTTCSSSSCTTCCCCH---HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEE
Confidence 55667777864 7999999999999954 899999999999999864
No 172
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=89.37 E-value=0.27 Score=33.55 Aligned_cols=33 Identities=6% Similarity=0.004 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
-++|-.|||+.+|+.+ ..+.|+++.|...|+++
T Consensus 179 ~~~t~~~lA~~lg~sr---~tvsR~l~~l~~~g~I~ 211 (232)
T 2gau_A 179 IYLSREELATLSNMTV---SNAIRTLSTFVSERMLA 211 (232)
T ss_dssp CCCCHHHHHHHTTSCH---HHHHHHHHHHHHTTSEE
T ss_pred cccCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEe
Confidence 4789999999999955 89999999999999875
No 173
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=89.36 E-value=0.26 Score=33.41 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
-++|-.+||+.+|+.+ ..+.|+++.|...|+++
T Consensus 166 ~~~t~~~lA~~lg~sr---~tvsR~l~~l~~~g~I~ 198 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTR---QTVSVLLNDFKKMGILE 198 (220)
T ss_dssp CSSCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEE
T ss_pred ccCCHHHHHHHhCCcH---HHHHHHHHHHHHCCCEE
Confidence 3789999999999955 89999999999999876
No 174
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=89.26 E-value=0.28 Score=33.34 Aligned_cols=32 Identities=13% Similarity=0.308 Sum_probs=29.2
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++|-.+||+.+|+.+ ..+.|+++.|...|+++
T Consensus 163 ~~t~~~lA~~lG~sr---~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 163 DFTVEEIANLIGSSR---QTTSTALNSLIKEGYIS 194 (222)
T ss_dssp CCCHHHHHHHHCSCH---HHHHHHHHHHHHTTSSE
T ss_pred cCCHHHHHHHhCCcH---HHHHHHHHHHHHCCcEE
Confidence 589999999999955 89999999999999876
No 175
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=89.14 E-value=0.23 Score=33.33 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=29.2
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++|-.|||+.+|+.+ ..+.|+++.|...|+++
T Consensus 146 ~~t~~~lA~~lg~sr---~tvsR~l~~L~~~g~I~ 177 (202)
T 2zcw_A 146 KATHDELAAAVGSVR---ETVTKVIGELAREGYIR 177 (202)
T ss_dssp ECCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEE
Confidence 589999999999955 89999999999999875
No 176
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=89.14 E-value=0.23 Score=33.68 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=29.2
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|+|-.+||+.+|+.+ ..+.|+++.|...|+++
T Consensus 187 ~lt~~~lA~~lg~sr---~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 187 RVSRQELARLVGCSR---EMAGRVLKKLQADGLLH 218 (230)
T ss_dssp ECCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCcH---HHHHHHHHHHHHCCCEE
Confidence 479999999999955 89999999999999876
No 177
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=89.08 E-value=0.28 Score=33.30 Aligned_cols=32 Identities=6% Similarity=0.201 Sum_probs=29.4
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++|-.|||+.+|+.+ ..+.|+++.|...|+++
T Consensus 177 ~~t~~~lA~~lg~sr---~tvsR~l~~l~~~g~I~ 208 (227)
T 3d0s_A 177 DLTQEEIAQLVGASR---ETVNKALADFAHRGWIR 208 (227)
T ss_dssp CCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCcH---HHHHHHHHHHHHCCCEE
Confidence 689999999999955 89999999999999875
No 178
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=88.73 E-value=0.25 Score=33.16 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
-++|-.|||+.+|+.+ ..+.|+++.|...|+++
T Consensus 162 ~~~t~~~lA~~lg~sr---~tvsR~l~~l~~~g~I~ 194 (216)
T 4ev0_A 162 FQIRHHELAALAGTSR---ETVSRVLHALAEEGVVR 194 (216)
T ss_dssp EECCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEE
Confidence 3689999999999955 89999999999999875
No 179
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=88.49 E-value=0.43 Score=31.01 Aligned_cols=39 Identities=18% Similarity=0.053 Sum_probs=32.5
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVR 90 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa 90 (97)
..+||+..|.. |++|-.|||+.+|++. ..+.|+=|.|-.
T Consensus 46 ~R~~l~~~L~~--ge~TQREIA~~lGiS~---stISRi~r~L~~ 84 (101)
T 1jhg_A 46 TRVRIIEELLR--GEMSQRELKNELGAGI---ATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHH--CCSCHHHHHHHHCCCH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCcCHHHHHHHHCCCh---hhhhHHHHHHHH
Confidence 56788888866 7899999999999954 889999887754
No 180
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=88.32 E-value=0.4 Score=30.16 Aligned_cols=32 Identities=3% Similarity=-0.063 Sum_probs=29.3
Q ss_pred CCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 62 MTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 62 ~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
++..+||..+|+++ ..+.+.+..|...|++..
T Consensus 21 ~~~t~La~~~~ls~---~~~~~~l~~L~~~GLI~~ 52 (95)
T 1r7j_A 21 SPKTRIMYGANLSY---ALTGRYIKMLMDLEIIRQ 52 (95)
T ss_dssp BCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCcCH---HHHHHHHHHHHHCCCeEE
Confidence 89999999999955 999999999999998863
No 181
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=88.27 E-value=0.27 Score=33.27 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
-++|-.+||+.+|+.+ ..+.|+++.|...|+++
T Consensus 177 ~~~t~~~lA~~lg~sr---~tvsR~l~~l~~~g~I~ 209 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQP---ETFSRIMHRLGDEGIIH 209 (227)
T ss_dssp CCSCTHHHHHHTTSCH---HHHHHHHHHHHHHTSEE
T ss_pred ecCCHHHHHHHhCCCH---HHHHHHHHHHHHCCcEE
Confidence 4689999999999955 89999999999999875
No 182
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=88.23 E-value=0.24 Score=33.10 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=29.2
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++|-.|||+.+|+.+ ..+.|+|+.|...|+++
T Consensus 139 ~~t~~~lA~~lg~sr---~tvsR~l~~L~~~g~I~ 170 (195)
T 3b02_A 139 TVSHEEIADATASIR---ESVSKVLADLRREGLIA 170 (195)
T ss_dssp ECCHHHHHHTTTSCH---HHHHHHHHHHHHHTSEE
T ss_pred cCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEE
Confidence 589999999999955 89999999999999875
No 183
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=88.09 E-value=0.36 Score=33.52 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
-++|-.|||+.+|+.+ ..+.|+|+.|...|+++
T Consensus 192 ~~lt~~~lA~~lG~sr---~tvsR~l~~L~~~GlI~ 224 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTR---VTVTRLLGDLREKKMIS 224 (243)
T ss_dssp SCCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred ccCCHHHHHHHHCCcH---HHHHHHHHHHHHCCCEE
Confidence 3789999999999955 89999999999999875
No 184
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=87.96 E-value=0.37 Score=33.43 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
-++|-.+||+.+|+.+ ..+.|+++.|...|+++
T Consensus 176 ~~~t~~~iA~~lG~sr---~tvsR~l~~L~~~g~I~ 208 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHH---VTVSRVLASLKRENILD 208 (250)
T ss_dssp CCCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHhCCcH---HHHHHHHHHHHHCCCeE
Confidence 3789999999999955 89999999999999885
No 185
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=87.93 E-value=0.31 Score=33.57 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=29.2
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++|-.|||+.+|+.+ ..+.|+++.|...|+++
T Consensus 186 ~~t~~~lA~~lG~sr---~tvsR~l~~l~~~glI~ 217 (232)
T 1zyb_A 186 KVKMDDLARCLDDTR---LNISKTLNELQDNGLIE 217 (232)
T ss_dssp ECCHHHHHHHHTSCH---HHHHHHHHHHHHTTSCE
T ss_pred cCCHHHHHHHhCCCh---hHHHHHHHHHHHCCCEE
Confidence 589999999999955 89999999999999875
No 186
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=87.16 E-value=0.26 Score=30.64 Aligned_cols=34 Identities=6% Similarity=0.230 Sum_probs=29.7
Q ss_pred CCCC-CHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPM-TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~-s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+..+ |..|||+.+|++. ..+++.++.|...|++.
T Consensus 32 g~~lps~~eLa~~~~vSr---~tvr~al~~L~~~Gli~ 66 (102)
T 1v4r_A 32 GDTLPSVADIRAQFGVAA---KTVSRALAVLKSEGLVS 66 (102)
T ss_dssp TSBCCCHHHHHHHSSSCT---THHHHHTTTTTTSSCCE
T ss_pred cCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 4556 9999999999955 88999999999999875
No 187
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=87.08 E-value=0.35 Score=34.17 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
+++|..++|+.+++++ +.+.|.++.|...|+|..
T Consensus 26 ~~~s~s~aA~~L~isq---~avSr~I~~LE~~~L~~R 59 (230)
T 3cta_A 26 AYLTSSKLADMLGISQ---QSASRIIIDLEKNGYITR 59 (230)
T ss_dssp EECCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEE
Confidence 5789999999999954 899999999999999863
No 188
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=86.09 E-value=1.7 Score=27.71 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=35.6
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhC---C-C-CCCc-ccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQ---I-H-PTKT-RCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g---~-~-~~~~-~~L~RlLR~Laa~gif~ 95 (97)
.++-|-..|.. +|++-.||+..+. . . ..++ ..|+++|+-|...|+++
T Consensus 14 ~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~ 66 (118)
T 2esh_A 14 LASTILLLVAE--KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLS 66 (118)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeE
Confidence 44555566765 7999999999984 1 1 0267 78999999999999885
No 189
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=85.67 E-value=0.12 Score=34.89 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=35.3
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++..|.+.|.. ++.+|..|||+.+|+++ ..+++-++.|...|++.
T Consensus 14 l~~~Il~~l~~-~~~ls~~eLa~~lgvSr---~~vr~al~~L~~~Gli~ 58 (163)
T 2gqq_A 14 IDRNILNELQK-DGRISNVELSKRVGLSP---TPCLERVRRLERQGFIQ 58 (163)
T ss_dssp HHHHHHHHHHH-CSSCCTTGGGTSSSCCT---TTSSSTHHHHHHHTSEE
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEE
Confidence 34455565655 46789999999999965 77888999999999875
No 190
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=85.62 E-value=0.59 Score=34.64 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+.+|..|||+++|++. ..++|.|..|...|+++
T Consensus 20 ~~~~~~ela~~l~vS~---~tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 20 QDMTQAQIARELGIYR---TTISRLLKRGREQGIVT 52 (315)
T ss_dssp SCCCHHHHHHHTTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEE
Confidence 6799999999999954 89999999999999885
No 191
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=85.53 E-value=0.47 Score=33.38 Aligned_cols=32 Identities=6% Similarity=0.040 Sum_probs=29.4
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++|-.+||+.+|+.+ ..+.|+|+.|...|+++
T Consensus 217 ~lt~~~lA~~lG~sr---~tvsR~l~~L~~~GlI~ 248 (260)
T 3kcc_A 217 KITRQEIGQIVGCSR---ETVGRILKMLEDQNLIS 248 (260)
T ss_dssp ECCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCCH---HHHHHHHHHHHHCCCEE
Confidence 689999999999955 89999999999999876
No 192
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=85.18 E-value=0.87 Score=31.34 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=28.8
Q ss_pred CCCHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCccc
Q 041844 61 PMTLNQLLGALQIHPTKTR-CLHFLVCSLVRSGFFN 95 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~-~L~RlLR~Laa~gif~ 95 (97)
++|-.|||+.+|+ .++ .+.|+|+.|...|+++
T Consensus 169 ~~t~~~lA~~lG~---sr~etvsR~l~~l~~~glI~ 201 (238)
T 2bgc_A 169 NLTMQELGYSSGI---AHSSAVSRIISKLKQEKVIV 201 (238)
T ss_dssp CCCHHHHHHHTTC---CCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCC---ChHHHHHHHHHHHHHCCCEE
Confidence 7899999999999 444 9999999999999875
No 193
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=84.82 E-value=0.8 Score=30.63 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
...|.++||+++|+++ ..+.|++..|...|+++
T Consensus 50 ~~ps~~~LA~~~~~s~---~~v~~~L~~L~~KGlI~ 82 (135)
T 2v79_A 50 YFPTPNQLQEGMSISV---EECTNRLRMFIQKGFLF 82 (135)
T ss_dssp CSCCHHHHHTTSSSCH---HHHHHHHHHHHHHTSCE
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 5689999999999954 89999999999999886
No 194
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=84.12 E-value=0.44 Score=36.50 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=34.8
Q ss_pred hhHHHhhC-CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 51 IPDIIHNH-TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 51 I~D~La~~-~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
|...|.++ ++++|..|||+.++++ +..+.|++.-|...|++..
T Consensus 409 vl~~l~~~~~~~~~~~~l~~~~~~~---~~~~t~~~~~le~~g~v~r 452 (487)
T 1hsj_A 409 ILNHILRSESNEISSKEIAKCSEFK---PYYLTKALQKLKDLKLLSK 452 (487)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSCCC---HHHHHHHHHHHHTTTTSCC
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCCC---HHHHHHHHHHHHHCCCEee
Confidence 44455554 2689999999999995 4899999999999998864
No 195
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=83.80 E-value=1.1 Score=29.13 Aligned_cols=34 Identities=9% Similarity=0.205 Sum_probs=29.4
Q ss_pred CCCC-CHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPM-TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~-s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|..+ |..+||+.+|++. ..+++-++.|...|++.
T Consensus 35 G~~LPser~La~~~gVSr---~tVReAl~~L~~eGlv~ 69 (134)
T 4ham_A 35 GEKILSIREFASRIGVNP---NTVSKAYQELERQEVII 69 (134)
T ss_dssp TCEECCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCCCccHHHHHHHHCCCH---HHHHHHHHHHHHCCcEE
Confidence 3456 8899999999954 88999999999999875
No 196
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=83.67 E-value=0.59 Score=31.86 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=27.5
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGF 93 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gi 93 (97)
|+|-.+||+.+|+.+ ..+.|+++.|...|+
T Consensus 178 ~~t~~~iA~~lg~sr---~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKP---ESLSRAFSRLKAAGV 207 (237)
T ss_dssp CSCTHHHHHHTTCCH---HHHHHHHHHHGGGTE
T ss_pred cCCHHHHHHHhCCCH---HHHHHHHHHHHHCCe
Confidence 678999999999955 899999999999996
No 197
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=83.41 E-value=1.9 Score=27.85 Aligned_cols=44 Identities=11% Similarity=0.177 Sum_probs=34.0
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHh------CCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGAL------QIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~------g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+++-|--+|.. +|++--||+..+ ++ ++..|+++|+-|...|+++
T Consensus 12 l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~ 61 (117)
T 4esf_A 12 LEGCVLEIISR--RETYGYEITRHLNDLGFTEV---VEGTVYTILVRLEKKKLVN 61 (117)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTC---CHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEE
Confidence 33334445655 799999999987 44 5589999999999999886
No 198
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=83.36 E-value=0.56 Score=29.80 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=29.4
Q ss_pred CCCC-CHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPM-TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~-s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.+ |..|||+.+|+.. ..+++-++.|...|++.
T Consensus 40 g~~lps~~eLa~~lgVSr---~tVr~al~~L~~~GlI~ 74 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITR---SVIVNALRKLESAGVIE 74 (102)
T ss_dssp TEEEECHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCcCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 3455 9999999999954 88999999999999875
No 199
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=83.33 E-value=0.7 Score=33.67 Aligned_cols=42 Identities=10% Similarity=0.237 Sum_probs=34.1
Q ss_pred hhHHHhhCC-CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 51 IPDIIHNHT-KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 51 I~D~La~~~-gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|-..|.+++ +++|..|||+.+++++ ..+.|++.-|...|++.
T Consensus 39 vL~~L~~~~~~~~~~~el~~~l~~~~---~t~t~~l~rLe~~G~i~ 81 (250)
T 1p4x_A 39 LLTYLFHQQENTLPFKKIVSDLCYKQ---SDLVQHIKVLVKHSYIS 81 (250)
T ss_dssp HHHHHHSCSCSEEEHHHHHHHSSSCG---GGTHHHHHHHHHTTSCE
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCCH---hhHHHHHHHHHHCCCEE
Confidence 334455443 6899999999999954 89999999999999885
No 200
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=83.07 E-value=0.74 Score=29.32 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=29.4
Q ss_pred CCCC-CHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPM-TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~-s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|..+ |..|||+.+|++. ..+++.++.|...|++.
T Consensus 30 G~~lPs~~~La~~~~vSr---~tvr~al~~L~~~Gli~ 64 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINP---LTVSKAYQSLLDDNVIE 64 (113)
T ss_dssp TCEECCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCcCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 3456 8999999999954 88999999999999875
No 201
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=82.45 E-value=0.26 Score=33.52 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=0.0
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++|-.+||+.+|+.+ ..+.|+++.|...|+++
T Consensus 164 ~~t~~~lA~~lg~sr---~tvsR~l~~L~~~G~I~ 195 (213)
T 1o5l_A 164 PVTLEELSRLFGCAR---PALSRVFQELEREGYIE 195 (213)
T ss_dssp -----------------------------------
T ss_pred CCCHHHHHHHhCCCH---HHHHHHHHHHHHCCeEE
Confidence 789999999999965 89999999999999875
No 202
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=81.98 E-value=1.2 Score=34.03 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=32.9
Q ss_pred HHhhCCCCCCHHHHHHHh--CCCCCCcccHHHHHHHHHhcCcccc
Q 041844 54 IIHNHTKPMTLNQLLGAL--QIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 54 ~La~~~gp~s~~ELA~~~--g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
.|.. ++|.++.+||+.. +++| ..++|-|..|...|++..
T Consensus 30 yl~~-~~pV~s~~La~~~~l~VS~---aTIRrDL~~LE~~GlL~r 70 (338)
T 1stz_A 30 YIEN-KKPVSSQRVLEVSNIEFSS---ATIRNDMKKLEYLGYIYQ 70 (338)
T ss_dssp HHHH-CSCBCHHHHHHHSCCCSCH---HHHHHHHHHHHHTTSEEC
T ss_pred HHHc-CCCccHHHHHHHhCCCCCH---HHHHHHHHHHHHCCCEEE
Confidence 4544 5899999999998 7744 899999999999998763
No 203
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=81.89 E-value=1.3 Score=27.62 Aligned_cols=35 Identities=11% Similarity=0.241 Sum_probs=26.9
Q ss_pred hHHHhhC-CCCCCHHHHHHHhCCCCCCcccHHHHHHHHH
Q 041844 52 PDIIHNH-TKPMTLNQLLGALQIHPTKTRCLHFLVCSLV 89 (97)
Q Consensus 52 ~D~La~~-~gp~s~~ELA~~~g~~~~~~~~L~RlLR~La 89 (97)
.+.|.++ ..++|+++||+.+|+++ ..|.|+.+...
T Consensus 13 ~~~i~~~~~~~~~~~~lA~~~~~S~---~~l~r~fk~~~ 48 (113)
T 3oio_A 13 VSLMEANIEEPLSTDDIAYYVGVSR---RQLERLFKQYL 48 (113)
T ss_dssp HHHHHTCSSSCCCHHHHHHHHTSCH---HHHHHHHHHHT
T ss_pred HHHHHhhhcCCCCHHHHHHHHCcCH---HHHHHHHHHHH
Confidence 3455554 36899999999999955 88999988654
No 204
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=81.74 E-value=0.98 Score=27.89 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=25.8
Q ss_pred HHHhhC-CCCCCHHHHHHHhCCCCCCcccHHHHHHHHH
Q 041844 53 DIIHNH-TKPMTLNQLLGALQIHPTKTRCLHFLVCSLV 89 (97)
Q Consensus 53 D~La~~-~gp~s~~ELA~~~g~~~~~~~~L~RlLR~La 89 (97)
+.|.++ ..+.|+++||+.+|+++ ..|.|+.+...
T Consensus 9 ~~i~~~~~~~~~~~~lA~~~~~s~---~~l~r~fk~~~ 43 (108)
T 3mn2_A 9 EYIEANWMRPITIEKLTALTGISS---RGIFKAFQRSR 43 (108)
T ss_dssp HHHHHHTTSCCCHHHHHHHHTCCH---HHHHHHHHHHT
T ss_pred HHHHHcccCCCCHHHHHHHHCCCH---HHHHHHHHHHh
Confidence 444333 36899999999999955 88999988654
No 205
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=81.63 E-value=0.57 Score=30.18 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=30.5
Q ss_pred hcChhHHHhhCC---CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 041844 48 QVGIPDIIHNHT---KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSG 92 (97)
Q Consensus 48 eLgI~D~La~~~---gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~g 92 (97)
+-.|++.|-++. ..+|+.|||+++++++ ..+.|+-|.|--.|
T Consensus 19 e~~ia~yil~~~~~~~~~si~elA~~~~vS~---aTv~Rf~kkLGf~g 63 (107)
T 3iwf_A 19 EKKIAQFILNYPHKVVNMTSQEIANQLETSS---TSIIRLSKKVTPGG 63 (107)
T ss_dssp HHHHHHHHHHCHHHHTTCCHHHHHHHHTSCH---HHHHHHHHHHSTTH
T ss_pred HHHHHHHHHhCHHHHHHCCHHHHHHHHCCCH---HHHHHHHHHhCCCC
Confidence 444556555543 5799999999999955 78888888775444
No 206
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=81.24 E-value=0.47 Score=30.55 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=30.0
Q ss_pred hcChhHHHhhCC---CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 041844 48 QVGIPDIIHNHT---KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSG 92 (97)
Q Consensus 48 eLgI~D~La~~~---gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~g 92 (97)
+-.|++.|-++. ..+|+.|||+++++.+ ..+.|+-|.|--.|
T Consensus 23 e~~ia~yil~~~~~~~~~si~elA~~~~vS~---aTv~Rf~kklG~~g 67 (111)
T 2o3f_A 23 ERKLADYILAHPHXAIESTVNEISALANSSD---AAVIRLCXSLGLKG 67 (111)
T ss_dssp HHHHHHHHHHCHHHHHTCCHHHHHHHTTCCH---HHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHChHHHHhcCHHHHHHHHCCCH---HHHHHHHHHcCCCC
Confidence 444556665543 4689999999999955 78888888665544
No 207
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=80.95 E-value=2.3 Score=27.21 Aligned_cols=46 Identities=9% Similarity=0.179 Sum_probs=34.5
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhC------CCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQ------IHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g------~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++-|--.|.. +|++--||...+. ... ++..|+++|+-|...|+++
T Consensus 13 l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i-~~gtly~~L~rLe~~GlI~ 64 (116)
T 3f8b_A 13 TNVILLNVLKQ--GDNYVYGIIKQVKEASNGEMEL-NEATLYTIFKRLEKDGIIS 64 (116)
T ss_dssp HHHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCC-CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHCCCEE
Confidence 44444555655 8999999998872 122 5689999999999999886
No 208
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=80.73 E-value=1.3 Score=27.42 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRS 91 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~ 91 (97)
.++|+++||+.+|+++ ..|.|+.+.....
T Consensus 20 ~~~~~~~lA~~~~~S~---~~l~r~fk~~~G~ 48 (108)
T 3oou_A 20 EGMSLKTLGNDFHINA---VYLGQLFQKEMGE 48 (108)
T ss_dssp SCCCHHHHHHHHTSCH---HHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHHHHHCc
Confidence 5899999999999955 8899999866533
No 209
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=80.71 E-value=1.3 Score=29.00 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=29.5
Q ss_pred CCCC-CHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPM-TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~-s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|..+ |..+||+.+|++. ..+++.++.|...|++.
T Consensus 25 G~~LPse~~La~~~gvSr---~tVr~Al~~L~~~Gli~ 59 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINP---ATARNGLTLLVEAGILY 59 (129)
T ss_dssp TSCBCCHHHHHHHTTCCH---HHHHHHHHHHHTTTSEE
T ss_pred CCcCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEE
Confidence 3566 8999999999954 78999999999999875
No 210
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=80.09 E-value=1.3 Score=33.04 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=35.4
Q ss_pred cChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 49 VGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 49 LgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
..|.+.|.+ ++++|..|||+.+++++ ..++|-++.|...|+..
T Consensus 8 ~~Il~~L~~-~~~~s~~eLa~~l~vS~---~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 8 LKLIALLAN-GEFHSGEQLGETLGMSR---AAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHTT-SSCBCHHHHHHHHTSCH---HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHc-CCCcCHHHHHHHHCCCH---HHHHHHHHHHHhCCCcE
Confidence 346677753 57899999999999954 89999999999999763
No 211
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=80.03 E-value=1.1 Score=29.23 Aligned_cols=34 Identities=9% Similarity=0.080 Sum_probs=29.6
Q ss_pred CCCC-CHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPM-TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~-s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|..+ |..+||+.+|++. ..+++.++.|...|++.
T Consensus 32 G~~lPse~~La~~~~vSr---~tvr~Al~~L~~~Gli~ 66 (126)
T 3by6_A 32 NDQLPSVRETALQEKINP---NTVAKAYKELEAQKVIR 66 (126)
T ss_dssp TCEECCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCcCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 3566 9999999999954 88999999999999875
No 212
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=79.97 E-value=1.8 Score=29.50 Aligned_cols=46 Identities=7% Similarity=0.033 Sum_probs=34.8
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCC-----CCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQI-----HPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~-----~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++-|-..|.. +|++-.||++.+.- -+..+..|++.|+-|...|+++
T Consensus 4 ~~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~ 54 (179)
T 1yg2_A 4 PHVILTVLST--RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVT 54 (179)
T ss_dssp HHHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeE
Confidence 3344556765 89999999999841 0114589999999999999886
No 213
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=79.65 E-value=1.3 Score=31.48 Aligned_cols=34 Identities=6% Similarity=0.050 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|..++..|||+.+|++. ..+++-|+.|...|++.
T Consensus 47 G~~L~e~~La~~lgVSr---~~VReAL~~L~~~Glv~ 80 (237)
T 3c7j_A 47 GTALRQQELATLFGVSR---MPVREALRQLEAQSLLR 80 (237)
T ss_dssp TCBCCHHHHHHHHTSCH---HHHHHHHHHHHHTTSEE
T ss_pred cCeeCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEE
Confidence 46789999999999954 88999999999999875
No 214
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=79.61 E-value=1.3 Score=28.69 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=34.1
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhC------CCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQ------IHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g------~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++-|-..|.. +|++--||++.+. ++ +..|++.|+.|...|+++
T Consensus 15 l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i~---~gtly~~L~~Le~~GlI~ 64 (117)
T 3elk_A 15 ITLYILKELVK--RPMHGYELQKSMFETTGQALP---QGSIYILLKTMKERGFVI 64 (117)
T ss_dssp HHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCCC---TTHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCCC---cchHHHHHHHHHHCCCEE
Confidence 44444555655 7999999998876 43 389999999999999886
No 215
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=79.19 E-value=1.9 Score=27.16 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=25.4
Q ss_pred hHHHhhC-CCCCCHHHHHHHhCCCCCCcccHHHHHHH
Q 041844 52 PDIIHNH-TKPMTLNQLLGALQIHPTKTRCLHFLVCS 87 (97)
Q Consensus 52 ~D~La~~-~gp~s~~ELA~~~g~~~~~~~~L~RlLR~ 87 (97)
.+.|..+ ..++|+++||+.+|+++ ..|.|+++.
T Consensus 13 ~~~i~~~~~~~~~~~~lA~~~~~S~---~~l~r~fk~ 46 (120)
T 3mkl_A 13 CTVINNNIAHEWTLARIASELLMSP---SLLKKKLRE 46 (120)
T ss_dssp HHHHHTSTTSCCCHHHHHHHTTCCH---HHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 3445444 36899999999999955 889888875
No 216
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=78.93 E-value=1.3 Score=30.60 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.-+|.+.|++++++ +-++-+++||.|...|++.
T Consensus 62 KlITpsvlseRlkI---~gSLARkaLreL~~kGlIk 94 (143)
T 2xzm_8 62 KVLTVSTVVEKLKV---NGSLARQLMRTMADRKLVE 94 (143)
T ss_dssp SEECHHHHHHHHCB---CHHHHHHHHHHHHHTTSEE
T ss_pred eeecHHHHHHHhcc---hHHHHHHHHHHHHHCCCEE
Confidence 46899999999999 4489999999999999875
No 217
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=78.76 E-value=2.9 Score=26.89 Aligned_cols=47 Identities=11% Similarity=0.069 Sum_probs=34.7
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhC---CCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQ---IHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g---~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++-|--+|.. +|++--||++.+. .-..++..|+++|+-|...|+++
T Consensus 14 l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~ 63 (116)
T 3hhh_A 14 LEGLVLAIIQR--KETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVI 63 (116)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEE
Confidence 44444555655 7999999999973 10115589999999999999886
No 218
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=78.32 E-value=1.5 Score=29.38 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=35.2
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhC--------CCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQ--------IHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g--------~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++-|...|.. +|++-.||++.++ + ++..|+++|+-|...|+++
T Consensus 42 ~~~~IL~~L~~--~~~~gyeI~~~l~~~~~~~~~i---s~gtLy~~L~rLE~~GlI~ 93 (145)
T 1xma_A 42 VDTIILSLLIE--GDSYGYEISKNIRIKTDELYVI---KETTLYSAFARLEKNGYIK 93 (145)
T ss_dssp HHHHHHHHHHH--CCEEHHHHHHHHHHHHTTSCCC---CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHhhCCccCc---ChhHHHHHHHHHHHCCCEE
Confidence 55556666765 7899999988873 5 4589999999999999885
No 219
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=78.15 E-value=2 Score=23.87 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=23.3
Q ss_pred HHHhhCCCCCCHHHHHHHh-----CCCCCCcccHHHHHHH
Q 041844 53 DIIHNHTKPMTLNQLLGAL-----QIHPTKTRCLHFLVCS 87 (97)
Q Consensus 53 D~La~~~gp~s~~ELA~~~-----g~~~~~~~~L~RlLR~ 87 (97)
..+.. .++.|+.||++.+ +++ ...++|-|..
T Consensus 12 ~ll~~-~~~~t~~el~~~l~~~~~~vs---~~Tv~R~L~~ 47 (64)
T 2p5k_A 12 EIITS-NEIETQDELVDMLKQDGYKVT---QATVSRDIKE 47 (64)
T ss_dssp HHHHH-SCCCSHHHHHHHHHHTTCCCC---HHHHHHHHHH
T ss_pred HHHHc-CCCCCHHHHHHHHHHhCCCcC---HHHHHHHHHH
Confidence 34443 4799999999999 773 4778888873
No 220
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=78.10 E-value=1.6 Score=28.78 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.-+|++.|++++++.- ++-+++||.|...|++.
T Consensus 58 KlITpsvlseRlkI~g---SLAR~aLreL~~kGlIk 90 (108)
T 3u5c_Z 58 RYVSVSVLVDRLKIGG---SLARIALRHLEKEGIIK 90 (108)
T ss_dssp SSBSHHHHHHTTCCCT---THHHHHHHHHSSSSSCE
T ss_pred eEEeHHHhhhhhhhhH---HHHHHHHHHHHHCCCEE
Confidence 5689999999999954 89999999999999875
No 221
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=77.92 E-value=1.7 Score=30.70 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=27.1
Q ss_pred CHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 63 TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 63 s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
+..|||+.+++++ ..+.|+++.|...|++..
T Consensus 26 ~~~~La~~l~vs~---~tvs~~l~~Le~~GlV~r 56 (230)
T 1fx7_A 26 LRARIAERLDQSG---PTVSQTVSRMERDGLLRV 56 (230)
T ss_dssp CHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred cHHHHHHHHCcCH---HHHHHHHHHHHHCCCEEE
Confidence 4499999999944 899999999999998863
No 222
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=77.63 E-value=1.7 Score=29.14 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=31.0
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHH
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLV 89 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~La 89 (97)
-++.|+..|.+ | +|..|||+.+|+.+ ..+.|+-|.|-
T Consensus 64 ~R~eV~klL~~--G-~syreIA~~~g~S~---aTIsRv~r~L~ 100 (119)
T 3kor_A 64 QRLQVAKMIKQ--G-YTYATIEQESGAST---ATISRVKRSLQ 100 (119)
T ss_dssp HHHHHHHHHHH--T-CCHHHHHHHHCCCH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHc--C-CCHHHHHHHHCCCH---HHHHHHHHHHh
Confidence 45778888876 5 99999999999954 88999999875
No 223
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=77.56 E-value=1.7 Score=28.13 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=28.9
Q ss_pred CCC-CHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPM-TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~-s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
..+ |..|||+.+|++. ..+++.++.|+..|++.
T Consensus 35 ~~Lps~~~La~~~~vSr---~tvr~Al~~L~~~G~i~ 68 (125)
T 3neu_A 35 DKLPSVREMGVKLAVNP---NTVSRAYQELERAGYIY 68 (125)
T ss_dssp CBCCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCeEE
Confidence 455 7999999999954 88999999999999875
No 224
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=77.52 E-value=1.9 Score=26.41 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHhCC-CCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPMTLNQLLGALQI-HPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~-~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.+++.++|..+++ .- ..++.|.-+|.+.|+++
T Consensus 28 ~~~i~l~~aa~~L~v~~k---RRiYDI~NVLe~igli~ 62 (76)
T 1cf7_A 28 DGVLDLKLAADTLAVRQK---RRIYDITNVLEGIGLIE 62 (76)
T ss_dssp TTEEEHHHHHHHTTTCCT---HHHHHHHHHHHHHTSEE
T ss_pred CCcCcHHHHHHHhCCccc---eehhhHHHHHhHhccee
Confidence 478999999999999 54 89999999999999986
No 225
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=77.40 E-value=1 Score=22.99 Aligned_cols=28 Identities=11% Similarity=0.263 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRS 91 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~ 91 (97)
.+|..|||..+|+++ ..++|.++.....
T Consensus 21 g~s~~~IA~~lgis~---~Tv~~~~~~~~~~ 48 (51)
T 1tc3_C 21 NVSLHEMSRKISRSR---HCIRVYLKDPVSY 48 (51)
T ss_dssp TCCHHHHHHHHTCCH---HHHHHHHHCSTTT
T ss_pred CCCHHHHHHHHCcCH---HHHHHHHhhHHhc
Confidence 479999999999954 7888888754433
No 226
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=77.24 E-value=1.8 Score=30.49 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=35.3
Q ss_pred ChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 50 GIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
.|-+.|. .|+.|..+||.++|++- ....=+++.|...|++.+
T Consensus 15 ~ILE~Lk--~G~~~t~~Iak~LGlSh---g~aq~~Ly~LeREG~V~~ 56 (165)
T 2vxz_A 15 DILALLA--DGCKTTSLIQQRLGLSH---GRAKALIYVLEKEGRVTR 56 (165)
T ss_dssp HHHHHHT--TCCEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSCEE
T ss_pred HHHHHHH--hCCccHHHHHHHhCCcH---HHHHHHHHHHHhcCceEE
Confidence 4567776 48999999999999943 789999999999998764
No 227
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=77.12 E-value=2.5 Score=25.98 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=26.0
Q ss_pred HHHhhCC--CCCCHHHHHHHhCCCCCCcccHHHHHHHHH
Q 041844 53 DIIHNHT--KPMTLNQLLGALQIHPTKTRCLHFLVCSLV 89 (97)
Q Consensus 53 D~La~~~--gp~s~~ELA~~~g~~~~~~~~L~RlLR~La 89 (97)
+.|.++- .+.|+++||+.+|+++ ..|.|+.+.-.
T Consensus 10 ~~i~~~~~~~~~~~~~lA~~~~~S~---~~l~r~fk~~~ 45 (107)
T 2k9s_A 10 QYISDHLADSNFDIASVAQHVCLSP---SRLSHLFRQQL 45 (107)
T ss_dssp HHHHHTSSCSSCCHHHHHHHTTSCH---HHHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHCCCH---HHHHHHHHHHH
Confidence 4454432 6899999999999955 88999988654
No 228
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=76.84 E-value=1.8 Score=27.21 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=33.4
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHh----CCCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGAL----QIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~----g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.++-|--.|.. +|++-.||+..+ ++ ++..|+++|+-|...|+++
T Consensus 10 l~~~IL~~L~~--~~~~gyel~~~l~~~~~i---~~~tly~~L~~Le~~GlI~ 57 (108)
T 3l7w_A 10 IEYLILAIVSK--HDSYGYDISQTIKLIASI---KESTLYPILKKLEKAGYLS 57 (108)
T ss_dssp HHHHHHHHHHH--SCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHhCC---CcChHHHHHHHHHHCCCeE
Confidence 34444555655 788888888886 45 4589999999999999886
No 229
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=76.55 E-value=1.6 Score=28.04 Aligned_cols=33 Identities=9% Similarity=0.224 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.|.++.|||..++++ +..+.++++.|+..|.+.
T Consensus 19 ~p~~~~~la~~~~~~---~~~~~~~l~~l~~~G~l~ 51 (121)
T 2pjp_A 19 EPWWVRDLAKETGTD---EQAMRLTLRQAAQQGIIT 51 (121)
T ss_dssp SCEEHHHHHHHTTCC---HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHhCCC---HHHHHHHHHHHHHCCCEE
Confidence 678999999999994 488999999999999653
No 230
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=76.37 E-value=1.8 Score=30.57 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
.+.+..+||+.+++++ ..+.++++-|...|++..
T Consensus 23 ~~~~~~~la~~l~vs~---~tvs~~l~~Le~~GlV~r 56 (226)
T 2qq9_A 23 VTPLRARIAERLEQSG---PTVSQTVARMERDGLVVV 56 (226)
T ss_dssp CCCBHHHHHHHHTCCH---HHHHHHHHHHHHTTSEEE
T ss_pred CCccHHHHHHHHCCCH---HHHHHHHHHHHHCCCEEE
Confidence 3446699999999954 899999999999998863
No 231
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=76.24 E-value=2.2 Score=28.06 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=31.2
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVR 90 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa 90 (97)
-.+.|+..|.+ | .|..||++.+|++. ..+.|+-|.|-.
T Consensus 47 qR~~Ia~lL~~--G-~SyreIa~~tG~St---aTIsRv~r~L~~ 84 (107)
T 3frw_A 47 QRFEVAKMLTD--K-RTYLDISEKTGAST---ATISRVNRSLNY 84 (107)
T ss_dssp HHHHHHHHHHT--T-CCHHHHHHHHCCCH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--C-CCHHHHHHHHCccH---HHHHHHHHHHHc
Confidence 56778888866 4 99999999999944 789999988864
No 232
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=76.02 E-value=2 Score=26.13 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVR 90 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa 90 (97)
++.|++|||+.+|+++ ..|.|+.+....
T Consensus 18 ~~~~~~~lA~~~~~S~---~~l~r~fk~~~g 45 (103)
T 3lsg_A 18 SQFTLSVLSEKLDLSS---GYLSIMFKKNFG 45 (103)
T ss_dssp TTCCHHHHHHHTTCCH---HHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHHHHHC
Confidence 5899999999999955 889998886543
No 233
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=75.54 E-value=1.9 Score=27.57 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=27.1
Q ss_pred hHHHhhC-CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 041844 52 PDIIHNH-TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVR 90 (97)
Q Consensus 52 ~D~La~~-~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa 90 (97)
.+.|..+ ..++|+++||+.+|+++ ..|.|+++....
T Consensus 17 ~~~i~~~~~~~~sl~~lA~~~~~S~---~~l~r~fk~~~G 53 (129)
T 1bl0_A 17 LDWIEDNLESPLSLEKVSERSGYSK---WHLQRMFKKETG 53 (129)
T ss_dssp HHHHHTTTTSCCCCHHHHHHSSSCH---HHHHHHHHHHHS
T ss_pred HHHHHHccCCCCCHHHHHHHHCcCH---HHHHHHHHHHHC
Confidence 3445444 36799999999999954 889999886543
No 234
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=74.92 E-value=1.3 Score=32.10 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.|..+||..+|+++ +.+.-.|+.|+..|++.
T Consensus 177 ~~~t~~~la~~~~l~~---~~V~~~l~~L~~~~~v~ 209 (232)
T 2qlz_A 177 GRATVEELSDRLNLKE---REVREKISEMARFVPVK 209 (232)
T ss_dssp SEEEHHHHHHHHTCCH---HHHHHHHHHHTTTSCEE
T ss_pred CCCCHHHHHHHhCcCH---HHHHHHHHHHHhcCCeE
Confidence 8999999999999955 89999999999999884
No 235
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=73.74 E-value=0.67 Score=34.88 Aligned_cols=42 Identities=19% Similarity=0.130 Sum_probs=0.0
Q ss_pred ChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 50 GIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.|...|... +++|..|||+.+++++ ..++|.+..|...|+++
T Consensus 24 ~iL~~l~~~-~~~t~~eLa~~l~vs~---~Tv~r~l~~Le~~Glv~ 65 (345)
T 2o0m_A 24 QILRNIYWM-QPIGRRSLSETMGITE---RVLRTETDVLKQLNLIE 65 (345)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 445555443 6899999999999955 89999999999999885
No 236
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=73.18 E-value=3.5 Score=26.63 Aligned_cols=31 Identities=10% Similarity=0.183 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
....+.+| .+.+.+.| ...|+.+||++.|+.
T Consensus 9 ~~~Il~aA-------~~lf~~~G~~~~t~~~IA~~agvs 40 (192)
T 2zcm_A 9 KDKIIDNA-------ITLFSEKGYDGTTLDDISKSVNIK 40 (192)
T ss_dssp HHHHHHHH-------HHHHHHHCTTTCCHHHHHHHTTCC
T ss_pred HHHHHHHH-------HHHHHHcCcccCCHHHHHHHhCCC
Confidence 35667777 34555666 789999999999984
No 237
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=73.08 E-value=4.6 Score=25.62 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=17.4
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ..+|+.+||++.|+.
T Consensus 17 ~l~~~~G~~~~t~~~Ia~~agvs 39 (191)
T 1sgm_A 17 RLSQLQGYHATGLNQIVKESGAP 39 (191)
T ss_dssp HHHHHHCTTTCCHHHHHHHHCCC
T ss_pred HHHHHcCccccCHHHHHHHHCCC
Confidence 4455555 689999999999984
No 238
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=72.27 E-value=4.3 Score=25.69 Aligned_cols=30 Identities=3% Similarity=0.144 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
...+.+| .+.+.+.| ...|+.+||++.|++
T Consensus 11 ~~Il~aa-------~~l~~~~G~~~~ti~~Ia~~agvs 41 (188)
T 3qkx_A 11 EQIFSAT-------DRLMAREGLNQLSMLKLAKEANVA 41 (188)
T ss_dssp HHHHHHH-------HHHHHHSCSTTCCHHHHHHHHTCC
T ss_pred HHHHHHH-------HHHHHhcCcccCCHHHHHHHhCCC
Confidence 3455566 34556666 679999999999984
No 239
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=71.62 E-value=4 Score=29.53 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=32.4
Q ss_pred ChhHHHhhCC-CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcc
Q 041844 50 GIPDIIHNHT-KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFF 94 (97)
Q Consensus 50 gI~D~La~~~-gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif 94 (97)
.|.+.+.+++ .|-++.||+..++.+ ...+..+|+.|+..|.+
T Consensus 145 ~i~~~~~~~g~~pp~~~dl~~~l~~~---~~~~~~~l~~l~~~g~l 187 (258)
T 1lva_A 145 DLEDKYRVSRWQPPSFKEVAGSFNLD---PSELEELLHYLVREGVL 187 (258)
T ss_dssp HHHHHHHHHTTSCCBHHHHHHHTTCC---HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHCCCCCCCHHHHHhHhCCC---HHHHHHHHHHHHHCCCE
Confidence 3445554444 577999999999994 48899999999999954
No 240
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=70.59 E-value=1.7 Score=22.55 Aligned_cols=22 Identities=18% Similarity=-0.085 Sum_probs=18.1
Q ss_pred CCHHHHHHHhCCCCCCcccHHHHHH
Q 041844 62 MTLNQLLGALQIHPTKTRCLHFLVC 86 (97)
Q Consensus 62 ~s~~ELA~~~g~~~~~~~~L~RlLR 86 (97)
.|..|||..+|++. ..++|.++
T Consensus 22 ~s~~~ia~~lgvs~---~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAIIFGIGV---STLYRYFP 43 (52)
T ss_dssp CCHHHHHHTTSCCH---HHHHHHSC
T ss_pred CCHHHHHHHHCCCH---HHHHHHHH
Confidence 89999999999954 67777664
No 241
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=70.44 E-value=5.5 Score=26.13 Aligned_cols=31 Identities=6% Similarity=0.068 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| .+.+.+.| ...|+++||++.|+.
T Consensus 13 r~~Il~aA-------~~lf~~~G~~~~s~~~IA~~aGvs 44 (210)
T 2xdn_A 13 RAQIIEAA-------ERAFYKRGVARTTLADIAELAGVT 44 (210)
T ss_dssp HHHHHHHH-------HHHHHHHCSTTCCHHHHHHHHTCC
T ss_pred HHHHHHHH-------HHHHHHcCcccCcHHHHHHHHCCC
Confidence 34456666 34455556 789999999999984
No 242
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=70.43 E-value=3.3 Score=29.75 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+|++..+||+.+++.+ +.++.+++.|...|+++
T Consensus 29 ~~V~~~~LA~~LgvS~---~SV~~~lkkL~e~GLV~ 61 (200)
T 2p8t_A 29 EPLGRKQISERLELGE---GSVRTLLRKLSHLDIIR 61 (200)
T ss_dssp SCBCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCccHHHHHHHhCCCH---HHHHHHHHHHHHCCCEE
Confidence 7899999999999954 89999999999999875
No 243
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=70.07 E-value=2.5 Score=24.70 Aligned_cols=15 Identities=0% Similarity=0.213 Sum_probs=7.8
Q ss_pred ccHHHHHHHHHhcCc
Q 041844 79 RCLHFLVCSLVRSGF 93 (97)
Q Consensus 79 ~~L~RlLR~Laa~gi 93 (97)
+...||++.....|+
T Consensus 33 et~~rI~~aa~~lgY 47 (65)
T 1uxc_A 33 KTVEKVMAVVREHNY 47 (65)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCC
Confidence 444555555555554
No 244
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=69.49 E-value=3.3 Score=27.18 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=19.7
Q ss_pred ChhHHHhhCCCCCCHHHHHHHhCCC
Q 041844 50 GIPDIIHNHTKPMTLNQLLGALQIH 74 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~g~~ 74 (97)
.|++.|. ++|+|+.||+..+|+.
T Consensus 15 ~Ii~lL~--~~plta~ei~~~l~i~ 37 (105)
T 2gmg_A 15 KIIELLL--EGDYSPSELARILDMR 37 (105)
T ss_dssp HHHHHTT--TSCBCTTHHHHSSCCC
T ss_pred HHHHHHH--cCCCCHHHHHHHhCCC
Confidence 5678885 4899999999999994
No 245
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=69.49 E-value=5.4 Score=25.29 Aligned_cols=23 Identities=0% Similarity=0.008 Sum_probs=18.3
Q ss_pred hHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 52 PDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 52 ~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.+.+.+.| ...|+.+||++.|++
T Consensus 19 ~~l~~~~G~~~~tv~~Ia~~agvs 42 (195)
T 3ppb_A 19 LQLFVSQGFHGTSTATIAREAGVA 42 (195)
T ss_dssp HHHHHHTCSTTSCHHHHHHHHTCC
T ss_pred HHHHHhcCcccCCHHHHHHHhCCC
Confidence 35566666 789999999999984
No 246
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=69.44 E-value=2.6 Score=29.13 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|..+|-.+||+.+|++. ..++.-|+.|.+.|+++
T Consensus 33 G~~L~e~~La~~lgVSR---tpVREAL~~L~~eGlv~ 66 (218)
T 3sxy_A 33 GEKLNVRELSEKLGISF---TPVRDALLQLATEGLVK 66 (218)
T ss_dssp TCEECHHHHHHHHTCCH---HHHHHHHHHHHHHTSEE
T ss_pred CCEeCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEE
Confidence 46789999999999954 78999999999999886
No 247
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=69.40 E-value=6 Score=25.80 Aligned_cols=31 Identities=6% Similarity=0.174 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| .+.+.+.| ...|+++||++.|+.
T Consensus 14 r~~Il~aA-------~~lf~~~G~~~~s~~~IA~~aGvs 45 (197)
T 2hyt_A 14 RATLLATA-------RKVFSERGYADTSMDDLTAQASLT 45 (197)
T ss_dssp HHHHHHHH-------HHHHHHHCTTTCCHHHHHHHHTCC
T ss_pred HHHHHHHH-------HHHHHHhCcccCCHHHHHHHhCCC
Confidence 44566677 34555566 789999999999985
No 248
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=69.02 E-value=3.1 Score=26.61 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=25.8
Q ss_pred HHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHH
Q 041844 53 DIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLV 89 (97)
Q Consensus 53 D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~La 89 (97)
+.|.+ ..+.|++|||..+|.++ ..+.|+.+.-.
T Consensus 86 ~~i~~-~~~~sl~~lA~~~g~S~---~~f~r~Fk~~~ 118 (133)
T 1u8b_A 86 RLLEQ-ETPVTLEALADQVAMSP---FHLHRLFKATT 118 (133)
T ss_dssp HHTCS-SSCCCHHHHHHHHTSCH---HHHHHHHHHHT
T ss_pred HHHHh-cCCCCHHHHHHHHCcCH---HHHHHHHHHHH
Confidence 44543 47899999999999954 88999988554
No 249
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=69.00 E-value=7.2 Score=25.39 Aligned_cols=32 Identities=3% Similarity=0.173 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIHP 75 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~~ 75 (97)
....+.+| .+.+.+.| ...|+.+||++.|+..
T Consensus 19 r~~Il~aA-------~~l~~~~G~~~~t~~~IA~~agvs~ 51 (218)
T 3gzi_A 19 RDKLILAA-------RNLFIERPYAQVSIREIASLAGTDP 51 (218)
T ss_dssp HHHHHHHH-------HHHHHTSCCSCCCHHHHHHHHTSCT
T ss_pred HHHHHHHH-------HHHHHHCCCCcCCHHHHHHHhCCCH
Confidence 34566666 34566666 6799999999999953
No 250
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=68.82 E-value=4.2 Score=30.61 Aligned_cols=42 Identities=10% Similarity=0.153 Sum_probs=33.9
Q ss_pred ChhHHHhhC-CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcc
Q 041844 50 GIPDIIHNH-TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFF 94 (97)
Q Consensus 50 gI~D~La~~-~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif 94 (97)
.|.+.|.++ +.++|..|||+.+|++. ..+.+-++.|...|+.
T Consensus 7 ~iL~~L~~~~g~~~Sg~eLa~~lgvSr---~aV~k~i~~L~~~G~~ 49 (323)
T 3rkx_A 7 DVLQLLYKNKPNYISGQSIAESLNISR---TAVKKVIDQLKLEGCK 49 (323)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHHTSCH---HHHHHHHHHHHHTTCE
T ss_pred HHHHHHHhCCCCccCHHHHHHHHCCCH---HHHHHHHHHHHhcCCe
Confidence 456667543 46999999999999944 8899999999999973
No 251
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=68.44 E-value=8.2 Score=25.35 Aligned_cols=31 Identities=3% Similarity=0.122 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| .+.+.+.| ..+|+.+||++.|+.
T Consensus 30 r~~Il~aa-------~~lf~~~G~~~~tv~~IA~~agvs 61 (215)
T 2qko_A 30 RAALVNAA-------IEVLAREGARGLTFRAVDVEANVP 61 (215)
T ss_dssp HHHHHHHH-------HHHHHHTCTTTCCHHHHHHHSSST
T ss_pred HHHHHHHH-------HHHHHHhChhhccHHHHHHHcCCC
Confidence 34556666 34566666 679999999999984
No 252
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=67.78 E-value=5.8 Score=25.39 Aligned_cols=29 Identities=3% Similarity=0.198 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 39 MSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 39 ~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
..+.+| .+.+.+.| ...|+++||++.|+.
T Consensus 6 ~Il~aA-------~~lf~~~Gy~~~s~~~Ia~~agvs 35 (179)
T 2eh3_A 6 RILEVS-------KELFFEKGYQGTSVEEIVKRANLS 35 (179)
T ss_dssp HHHHHH-------HHHHHHHCSTTCCHHHHHHHHTCC
T ss_pred HHHHHH-------HHHHHHcCCccCCHHHHHHHhCCC
Confidence 456666 34455566 789999999999984
No 253
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=67.67 E-value=4.6 Score=26.28 Aligned_cols=31 Identities=10% Similarity=0.231 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| .+.+.+.| ...|+++||++.|+.
T Consensus 14 r~~Il~aA-------~~lf~e~G~~~~t~~~IA~~agvs 45 (192)
T 2fq4_A 14 QKAILSAS-------YELLLESGFKAVTVDKIAERAKVS 45 (192)
T ss_dssp HHHHHHHH-------HHHHHHHCTTTCCHHHHHHHHTCC
T ss_pred HHHHHHHH-------HHHHHHcCcccccHHHHHHHcCCC
Confidence 34456666 34455556 789999999999984
No 254
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=67.06 E-value=6.2 Score=25.72 Aligned_cols=31 Identities=3% Similarity=0.109 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
....+.+| .+.+.+.| ...|+++||++.|+.
T Consensus 16 r~~Il~aA-------~~lf~~~G~~~~s~~~Ia~~agvs 47 (203)
T 3ccy_A 16 RDTIIERA-------AAMFARQGYSETSIGDIARACECS 47 (203)
T ss_dssp HHHHHHHH-------HHHHHHTCTTTSCHHHHHHHTTCC
T ss_pred HHHHHHHH-------HHHHHHcCcccCCHHHHHHHhCCC
Confidence 34566666 34566666 789999999999984
No 255
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=67.02 E-value=2.9 Score=26.81 Aligned_cols=45 Identities=13% Similarity=0.057 Sum_probs=33.3
Q ss_pred cChhHHHhhCCCCCCHHHHHHHhC---CCCCCcccHHHHHHHHHhcCccc
Q 041844 49 VGIPDIIHNHTKPMTLNQLLGALQ---IHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 49 LgI~D~La~~~gp~s~~ELA~~~g---~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+-|--.|.. +|++--||+..+. .-..++..|+++|+-|...|+++
T Consensus 12 ~~IL~~L~~--~~~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~ 59 (115)
T 4esb_A 12 GCILYIISQ--EEVYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIE 59 (115)
T ss_dssp HHHHHHHHH--SCEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeE
Confidence 334445655 7999999998875 11115589999999999999886
No 256
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=67.00 E-value=6.4 Score=25.52 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=18.2
Q ss_pred hHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 52 PDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 52 ~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.+.+.+.| ...|+.+||++.|++
T Consensus 14 ~~l~~~~G~~~~t~~~Ia~~agvs 37 (185)
T 2yve_A 14 IDYIGEYSLETLSYDSLAEATGLS 37 (185)
T ss_dssp HHHHHHSCSTTCCHHHHHHHHCCC
T ss_pred HHHHHHcChhhccHHHHHHHhCCC
Confidence 35566666 789999999999984
No 257
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=66.99 E-value=1.5 Score=28.97 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.-+|++.|++++++.- ++-+++||.|...|++.
T Consensus 59 KlITpsvlseRlkI~g---SLAR~aLreL~~kGlIk 91 (108)
T 3iz6_V 59 KQITPSVLSERLRING---SLARQAIKDLESRGAIR 91 (108)
T ss_dssp SSEEEHHHHHHHHTCC---HHHHHHHHHHHHHHTSC
T ss_pred eEEeHHHHHhhhcccH---HHHHHHHHHHHHCCCEE
Confidence 5789999999999954 89999999999999875
No 258
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=66.75 E-value=5 Score=25.59 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=17.4
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 13 ~l~~~~G~~~~ti~~Ia~~agvs 35 (194)
T 3bqz_B 13 ELFIKNGYNATTTGEIVKLSESS 35 (194)
T ss_dssp HHHHHHTTTTCCHHHHHHHTTCC
T ss_pred HHHHHcCCccCCHHHHHHHhCCC
Confidence 4455555 789999999999984
No 259
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=66.63 E-value=4.3 Score=25.04 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+..|+.+||.++|+. ..-+.|+|=.|...|.+.
T Consensus 28 ~~~Ta~~IAkkLg~s---K~~vNr~LY~L~kkG~V~ 60 (75)
T 1sfu_A 28 DYTTAISLSNRLKIN---KKKINQQLYKLQKEDTVK 60 (75)
T ss_dssp CEECHHHHHHHTTCC---HHHHHHHHHHHHHTTSEE
T ss_pred cchHHHHHHHHHCCC---HHHHHHHHHHHHHCCCEe
Confidence 459999999999994 367999999888888663
No 260
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=66.32 E-value=1.1 Score=29.17 Aligned_cols=34 Identities=3% Similarity=0.028 Sum_probs=28.4
Q ss_pred CCCC-CHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPM-TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~-s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|..+ |..+||+.+|++. ..+++.++.|...|++.
T Consensus 32 G~~lPs~~~La~~~~vSr---~tvr~Al~~L~~~G~i~ 66 (126)
T 3ic7_A 32 EGRIPSVREYASIVEVNA---NTVMRSYEYLQSQEVIY 66 (126)
T ss_dssp TSEECCTTTTTTCC-CCS---GGGHHHHHHHHTTTSEE
T ss_pred CCcCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEE
Confidence 3456 8899999999965 88999999999999875
No 261
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=66.14 E-value=3.9 Score=29.47 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHhCCCCCCcccHHHHHH-HHHhcCccc
Q 041844 59 TKPMTLNQLLGALQIHPTKTRCLHFLVC-SLVRSGFFN 95 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~~~~~~~~L~RlLR-~Laa~gif~ 95 (97)
+++.+..++|+.+|++ ...++|.|+ +|...|++.
T Consensus 277 ~~~~~~~~~a~~lg~~---~~tl~~~l~~~l~~~gli~ 311 (338)
T 3pfi_A 277 QKPIGLASIAAALSED---ENTIEDVIEPYLLANGYIE 311 (338)
T ss_dssp SCCBCHHHHHHHTTCC---HHHHHHTTHHHHHHTTSEE
T ss_pred CCCchHHHHHHHhCCC---HHHHHHHHhHHHHHcCcee
Confidence 4678999999999994 489999999 999988864
No 262
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=65.99 E-value=6.5 Score=25.89 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
....|.+| .+.+.+.| ...|+++||++.|+.
T Consensus 13 r~~Il~aA-------~~lf~~~G~~~~s~~~IA~~aGvs 44 (210)
T 2wui_A 13 RDGILDAA-------ERVFLEKGVGTTAMADLADAAGVS 44 (210)
T ss_dssp HHHHHHHH-------HHHHHHSCTTTCCHHHHHHHHTSC
T ss_pred HHHHHHHH-------HHHHHHcCccccCHHHHHHHhCCC
Confidence 34566666 34555666 789999999999984
No 263
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=65.84 E-value=5.3 Score=25.78 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 39 MSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 39 ~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
..+.+| . +.+.+.| ...|+++||++.|+.
T Consensus 7 ~Il~aA--~-----~lf~~~G~~~~s~~~IA~~agvs 36 (190)
T 3vpr_A 7 RILEEA--A-----KLFTEKGYEATSVQDLAQALGLS 36 (190)
T ss_dssp HHHHHH--H-----HHHHHHCSTTCCHHHHHHHHTCC
T ss_pred HHHHHH--H-----HHHHHhCcccCCHHHHHHHhCCC
Confidence 455666 3 4455556 779999999999984
No 264
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=65.81 E-value=5.3 Score=25.63 Aligned_cols=30 Identities=7% Similarity=0.145 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
-..+.+| .+.+.+.| ...|+.+||++.|++
T Consensus 11 ~~Il~aA-------~~l~~~~G~~~~t~~~IA~~Agvs 41 (194)
T 3dpj_A 11 DQIVAAA-------DELFYRQGFAQTSFVDISAAVGIS 41 (194)
T ss_dssp HHHHHHH-------HHHHHHHCTTTCCHHHHHHHHTCC
T ss_pred HHHHHHH-------HHHHHHcCcccCCHHHHHHHHCCC
Confidence 3455566 34555556 789999999999984
No 265
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=65.52 E-value=5.4 Score=25.86 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=16.9
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ..+|+.+||++.|+.
T Consensus 20 ~l~~~~G~~~~ti~~IA~~agvs 42 (193)
T 2dg8_A 20 DLIAEEGIARVSHRRIAQRAGVP 42 (193)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTSC
T ss_pred HHHHHhChhhccHHHHHHHhCCC
Confidence 4455555 678999999999984
No 266
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=65.52 E-value=6.8 Score=25.03 Aligned_cols=31 Identities=3% Similarity=0.067 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| . +.+.+.| ...|+.+||++.|+.
T Consensus 19 r~~Il~aa--~-----~l~~~~G~~~~s~~~Ia~~agvs 50 (206)
T 3kz9_A 19 KQQLMEIA--L-----EVFARRGIGRGGHADIAEIAQVS 50 (206)
T ss_dssp HHHHHHHH--H-----HHHHHSCCSSCCHHHHHHHHTSC
T ss_pred HHHHHHHH--H-----HHHHhcCcccccHHHHHHHhCCC
Confidence 34456666 3 4455666 679999999999984
No 267
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=65.47 E-value=6 Score=25.20 Aligned_cols=22 Identities=9% Similarity=0.246 Sum_probs=16.9
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|++
T Consensus 18 ~l~~~~G~~~~s~~~IA~~agvs 40 (180)
T 2fd5_A 18 QALLERGAVEPSVGEVMGAAGLT 40 (180)
T ss_dssp HHHHHHTTTSCCHHHHHHHTTCC
T ss_pred HHHHHhCcccCCHHHHHHHhCCC
Confidence 4455555 679999999999984
No 268
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=65.05 E-value=5.5 Score=25.65 Aligned_cols=22 Identities=5% Similarity=0.226 Sum_probs=17.3
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 23 ~l~~~~G~~~~t~~~Ia~~agvs 45 (202)
T 3lwj_A 23 DLFIEKGYYNTSIRDIIALSEVG 45 (202)
T ss_dssp HHHHHHCTTTCCHHHHHHHHCSC
T ss_pred HHHHHcCcccCCHHHHHHHhCCC
Confidence 4455555 679999999999984
No 269
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=64.82 E-value=5.7 Score=25.45 Aligned_cols=22 Identities=9% Similarity=0.336 Sum_probs=17.4
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ..+|+.+||++.|+.
T Consensus 25 ~l~~~~G~~~~ti~~Ia~~agvs 47 (203)
T 3f1b_A 25 DVFSDRGFHETSMDAIAAKAEIS 47 (203)
T ss_dssp HHHHHHCTTTCCHHHHHHHTTSC
T ss_pred HHHHHcCcccccHHHHHHHhCCc
Confidence 4555555 689999999999984
No 270
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=64.73 E-value=6.9 Score=25.39 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
....+.+| .+.+.+.| ...|+.+||++.|+.
T Consensus 15 r~~Il~aA-------~~lf~~~G~~~~t~~~IA~~agvs 46 (217)
T 3nrg_A 15 RSRLIDVL-------LDEFAQNDYDSVSINRITERAGIA 46 (217)
T ss_dssp HHHHHHHH-------HHHHHHSCGGGCCHHHHHHHHTCC
T ss_pred HHHHHHHH-------HHHHHhcCcccCCHHHHHHHhCCc
Confidence 34555666 34555666 679999999999984
No 271
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=64.46 E-value=5.9 Score=25.59 Aligned_cols=22 Identities=9% Similarity=0.271 Sum_probs=16.4
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 18 ~l~~~~G~~~~t~~~Ia~~agvs 40 (195)
T 2dg7_A 18 ELYSEHGYDNVTVTDIAERAGLT 40 (195)
T ss_dssp HHHHHSCGGGCCHHHHHHHTTCC
T ss_pred HHHHhcCccccCHHHHHHHhCCC
Confidence 4455555 668999999999984
No 272
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=64.43 E-value=6.1 Score=25.65 Aligned_cols=31 Identities=10% Similarity=0.383 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| .+.+.+.| ...|+++||++.|+.
T Consensus 15 r~~Il~aa-------~~lf~~~G~~~~tv~~Ia~~agvs 46 (195)
T 2iu5_A 15 QKIIAKAF-------KDLMQSNAYHQISVSDIMQTAKIR 46 (195)
T ss_dssp HHHHHHHH-------HHHHHHSCGGGCCHHHHHHHHTSC
T ss_pred HHHHHHHH-------HHHHHhCCCCeeCHHHHHHHhCCC
Confidence 34455666 34555665 679999999999984
No 273
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=64.38 E-value=7.6 Score=25.37 Aligned_cols=31 Identities=6% Similarity=0.204 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| .+.+.+.| ...|+.+||++.|+.
T Consensus 32 r~~Il~aA-------~~l~~~~G~~~~t~~~IA~~aGvs 63 (222)
T 3bru_A 32 HQSLIRAG-------LEHLTEKGYSSVGVDEILKAARVP 63 (222)
T ss_dssp HHHHHHHH-------HHHHHHSCTTTCCHHHHHHHHTCC
T ss_pred HHHHHHHH-------HHHHHHcCCCcCcHHHHHHHhCCC
Confidence 45566666 35566666 789999999999984
No 274
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=64.17 E-value=5.2 Score=27.70 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=29.7
Q ss_pred CCCC-CHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPM-TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~-s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|..+ |-.|||+.+|++. ..++.-|+.|...|++.
T Consensus 28 G~~LPsE~eLa~~~gVSR---~tVReAL~~L~~eGlv~ 62 (239)
T 1hw1_A 28 GTILPAERELSELIGVTR---TTLREVLQRLARDGWLT 62 (239)
T ss_dssp TSBCCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCcEE
Confidence 4567 8999999999954 78999999999999875
No 275
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=63.89 E-value=4.1 Score=28.81 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|..++-.|||+.+|++. ..++.-|+.|.+.|++.
T Consensus 49 G~~L~e~~La~~lgVSR---tpVREAL~~L~~eGlv~ 82 (239)
T 2hs5_A 49 GARLSEPDICAALDVSR---NTVREAFQILIEDRLVA 82 (239)
T ss_dssp TCEECHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred cCEeCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEE
Confidence 45789999999999954 78999999999999885
No 276
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=63.70 E-value=3.7 Score=25.90 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=23.6
Q ss_pred hhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHH
Q 041844 51 IPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCS 87 (97)
Q Consensus 51 I~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~ 87 (97)
|.+.|... .+|+.|||..+|+++ ..++|.|..
T Consensus 12 I~~~l~~~--~~ti~dlA~~~gVS~---~TVsR~L~~ 43 (93)
T 2l0k_A 12 IGKYIVET--KKTVRVIAKEFGVSK---STVHKDLTE 43 (93)
T ss_dssp HHHHHHHH--CCCHHHHHHHHTSCH---HHHHHHHTT
T ss_pred HHHHHHHc--CCCHHHHHHHHCCCH---HHHHHHHcC
Confidence 45666553 389999999999954 778887753
No 277
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=63.54 E-value=8 Score=25.19 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| . +.+.+.| ..+|+.+||+++|+.
T Consensus 14 r~~Il~aa--~-----~l~~~~G~~~~ti~~Ia~~agvs 45 (189)
T 3vp5_A 14 RNRVYDAC--L-----NEFQTHSFHEAKIMHIVKALDIP 45 (189)
T ss_dssp HHHHHHHH--H-----HHHHHSCTTTCCHHHHHHHHTCC
T ss_pred HHHHHHHH--H-----HHHHHCCcccccHHHHHHHhCCC
Confidence 34555666 3 4455666 689999999999984
No 278
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=63.44 E-value=5.6 Score=25.07 Aligned_cols=22 Identities=0% Similarity=0.220 Sum_probs=17.4
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 15 ~l~~~~G~~~~t~~~Ia~~agvs 37 (170)
T 3egq_A 15 RLYMKKPPHEVSIEEIAREAKVS 37 (170)
T ss_dssp HHHTTSCGGGCCHHHHHHHHTSC
T ss_pred HHHHhcCCccCcHHHHHHHhCCC
Confidence 4555555 679999999999984
No 279
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=63.40 E-value=8.1 Score=24.98 Aligned_cols=31 Identities=6% Similarity=0.244 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| .+.+.+.| ..+|+.+||++.|+.
T Consensus 33 r~~Il~aa-------~~l~~~~G~~~~tv~~Ia~~agvs 64 (218)
T 3dcf_A 33 RTQIIKVA-------TELFREKGYYATSLDDIADRIGFT 64 (218)
T ss_dssp HHHHHHHH-------HHHHHHTCTTTCCHHHHHHHHTCC
T ss_pred HHHHHHHH-------HHHHHHcCcccCcHHHHHHHhCCC
Confidence 45566666 35566666 689999999999984
No 280
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=63.38 E-value=0.42 Score=36.39 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|+.|+.|||+.+|++. ..+++.|+.|...|++.
T Consensus 31 g~~t~~eia~~~gv~~---~~Vy~~L~~L~~~GlV~ 63 (342)
T 3qph_A 31 GPSTAKEISTKSGIPY---NRVYDTISSLKLRGFVT 63 (342)
T ss_dssp HHHHHSCCSSSTTSSS---CSCCHHHHHHHHHTSEE
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 6899999999999955 78999999999999875
No 281
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=63.21 E-value=4.8 Score=25.42 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC--------CCCcccHHHHHH
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH--------PTKTRCLHFLVC 86 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~--------~~~~~~L~RlLR 86 (97)
.-..+.+| .+.+.+.| ...|+.+||++.|+. +++.+++..++.
T Consensus 14 r~~Il~aa-------~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 65 (177)
T 3kkc_A 14 KVAIYNAF-------ISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCE 65 (177)
T ss_dssp HHHHHHHH-------HHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTCSSTHHHHHHHHH
T ss_pred HHHHHHHH-------HHHHHhCChhHhhHHHHHHHhCCcHhhHHHHcCCHHHHHHHHHH
Confidence 34556666 34555566 689999999999984 334455544444
No 282
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=62.90 E-value=6.4 Score=25.68 Aligned_cols=31 Identities=3% Similarity=-0.016 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
....+.+| .+.+.+.| ...|+++||++.|+.
T Consensus 12 r~~Il~aA-------~~lf~~~G~~~~s~~~IA~~aGvs 43 (194)
T 2nx4_A 12 RRSITAAA-------WRLIAARGIEAANMRDIATEAGYT 43 (194)
T ss_dssp HHHHHHHH-------HHHHHHHCTTTCCHHHHHHHHTCC
T ss_pred HHHHHHHH-------HHHHHhcCcccCCHHHHHHHhCCC
Confidence 34566666 34455566 789999999999984
No 283
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=62.84 E-value=6.2 Score=25.96 Aligned_cols=30 Identities=17% Similarity=0.374 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
-..+.+| . +.+.+.| ...|+++||++.|+.
T Consensus 14 ~~Il~aA--~-----~lF~~~Gy~~ts~~~IA~~aGvs 44 (202)
T 2i10_A 14 QVALQTA--M-----ELFWRQGYEGTSITDLTKALGIN 44 (202)
T ss_dssp HHHHHHH--H-----HHHHHHTTTTCCHHHHHHHHTCC
T ss_pred HHHHHHH--H-----HHHHHhCcccCCHHHHHHHhCCC
Confidence 3456666 3 3444556 788999999999984
No 284
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=62.71 E-value=5.2 Score=25.73 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
....+.+| .+.+.+.| ...|+.+||++.|+.
T Consensus 13 r~~Il~aA-------~~lf~~~G~~~~s~~~Ia~~agvs 44 (203)
T 3b81_A 13 RTELANKI-------WDIFIANGYENTTLAFIINKLGIS 44 (203)
T ss_dssp HHHHHHHH-------HHHHHHHCSTTCCHHHHHHHHTCC
T ss_pred HHHHHHHH-------HHHHHHcCcccCcHHHHHHHhCCC
Confidence 34456666 34455556 679999999999984
No 285
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=62.41 E-value=6.6 Score=25.38 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
....+.+| . +.+.+.| ...|+.+||++.|+.
T Consensus 16 r~~Il~aa--~-----~l~~~~G~~~~ti~~IA~~agvs 47 (212)
T 3knw_A 16 RQHILDSG--F-----HLVLRKGFVGVGLQEILKTSGVP 47 (212)
T ss_dssp HHHHHHHH--H-----HHHHHHCSTTCCHHHHHHHHTCC
T ss_pred HHHHHHHH--H-----HHHHHcCCccCCHHHHHHHhCCC
Confidence 34455566 3 4455555 689999999999984
No 286
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=62.39 E-value=6.3 Score=25.23 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=16.4
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| . .|+.+||++.|+.
T Consensus 20 ~lf~~~G~~-~t~~~IA~~aGvs 41 (190)
T 3jsj_A 20 ALTYRDGVG-IGVEALCKAAGVS 41 (190)
T ss_dssp HHHHHHCTT-CCHHHHHHHHTCC
T ss_pred HHHHHhCcc-ccHHHHHHHhCCC
Confidence 4455556 7 9999999999984
No 287
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=62.37 E-value=6.1 Score=25.37 Aligned_cols=22 Identities=9% Similarity=0.265 Sum_probs=16.9
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 27 ~l~~~~G~~~~t~~~Ia~~agvs 49 (211)
T 3him_A 27 EVFAAKGYGATTTREIAASLDMS 49 (211)
T ss_dssp HHHHHHCSTTCCHHHHHHHTTCC
T ss_pred HHHHHcCCCcCCHHHHHHHhCCC
Confidence 4455555 679999999999984
No 288
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=62.19 E-value=5.5 Score=25.76 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=16.2
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 18 ~lf~~~G~~~~s~~~IA~~aGvs 40 (178)
T 4hku_A 18 KIIYEKGMEKTTLYDIASNLNVT 40 (178)
T ss_dssp HHHHHHCGGGCCHHHHHHHTTSC
T ss_pred HHHHHhCcccccHHHHHHHhCcC
Confidence 3344555 678999999999974
No 289
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=62.16 E-value=6.7 Score=25.35 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| . +.+.+.| ...|+.+||++.|+.
T Consensus 20 r~~Il~aa--~-----~l~~~~G~~~~s~~~Ia~~agvs 51 (212)
T 1pb6_A 20 KKAILSAA--L-----DTFSQFGFHGTRLEQIAELAGVS 51 (212)
T ss_dssp HHHHHHHH--H-----HHHHHHCTTTCCHHHHHHHTTSC
T ss_pred HHHHHHHH--H-----HHHHHcCcchhhHHHHHHHHCCC
Confidence 44566666 3 4455555 789999999999984
No 290
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=62.10 E-value=6.5 Score=25.41 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
-..+.+| .+.+.+.| . .|+.+||++.|+.
T Consensus 18 ~~Il~aA-------~~lf~~~G~~-~s~~~IA~~agvs 47 (194)
T 2q24_A 18 DKILAAA-------VRVFSEEGLD-AHLERIAREAGVG 47 (194)
T ss_dssp HHHHHHH-------HHHHHHHCTT-CCHHHHHHHTTCC
T ss_pred HHHHHHH-------HHHHHhcCcC-CCHHHHHHHhCCC
Confidence 3455566 34455556 6 8999999999984
No 291
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=61.88 E-value=7.5 Score=21.47 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=24.6
Q ss_pred ChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHH
Q 041844 50 GIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCS 87 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~ 87 (97)
.|.+.+.+. . |..++|+.+|+.+ ..+.+.+|.
T Consensus 5 ~l~~~~~~~--g-s~~~~A~~lgis~---~~vs~~~~~ 36 (67)
T 2pij_A 5 PLSKYLEEH--G-TQSALAAALGVNQ---SAISQMVRA 36 (67)
T ss_dssp EHHHHHHHT--C-CHHHHHHHHTSCH---HHHHHHHHT
T ss_pred HHHHHHHHc--C-CHHHHHHHHCcCH---HHHHHHHcC
Confidence 456667663 3 9999999999954 789998873
No 292
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=61.77 E-value=5.8 Score=27.69 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=29.4
Q ss_pred CCCC-CHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 59 TKPM-TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 59 ~gp~-s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
|..+ |-.|||+.+|++. ..++.-|+.|.+.|+++-
T Consensus 25 G~~LpsE~~La~~lgVSR---tpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 25 GDHLPSERALSETLGVSR---SSLREALRVLEALGTIST 60 (239)
T ss_dssp TCBCCCHHHHHHHHTCCH---HHHHHHHHHHHHHTSEEC
T ss_pred CCcCCCHHHHHHHHCCCH---HHHHHHHHHHHHCCCeEe
Confidence 4567 5779999999954 789999999999999863
No 293
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=61.62 E-value=5.3 Score=25.31 Aligned_cols=22 Identities=14% Similarity=0.406 Sum_probs=16.8
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 21 ~l~~~~G~~~~t~~~IA~~agvs 43 (191)
T 3on4_A 21 ALIQKDGYNAFSFKDIATAINIK 43 (191)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTCC
T ss_pred HHHHHhCcccCCHHHHHHHhCCC
Confidence 4455555 679999999999984
No 294
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=61.50 E-value=6.8 Score=25.95 Aligned_cols=31 Identities=3% Similarity=0.122 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| .+.+.+.| ...|+++||++.|+.
T Consensus 24 r~~Il~AA-------~~lf~e~G~~~~s~~~IA~~AGVs 55 (207)
T 3bjb_A 24 HVRMLEAA-------IELATEKELARVQMHEVAKRAGVA 55 (207)
T ss_dssp HHHHHHHH-------HHHHHHSCGGGCCHHHHHHHHTCC
T ss_pred HHHHHHHH-------HHHHHHcCcccCCHHHHHHHhCCC
Confidence 34566666 34566666 678999999999984
No 295
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=61.46 E-value=6.9 Score=25.56 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| .+.+.+.| ...|+++||++.|+.
T Consensus 16 r~~Il~aA-------~~lf~~~G~~~~s~~~IA~~agvs 47 (204)
T 2ibd_A 16 RTELLDIA-------ATLFAERGLRATTVRDIADAAGIL 47 (204)
T ss_dssp HHHHHHHH-------HHHHHHHCSTTCCHHHHHHHTTSC
T ss_pred HHHHHHHH-------HHHHHHcCchhcCHHHHHHHhCCC
Confidence 44566666 34455556 789999999999984
No 296
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=61.38 E-value=1.7 Score=28.56 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLV 89 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~La 89 (97)
-++|-.+||+.+|+.+ ..+.|+++-|.
T Consensus 167 ~~~t~~~iA~~lG~sr---etlsR~l~~l~ 193 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTP---EYLSEIRKKYI 193 (194)
T ss_dssp ------------------------------
T ss_pred HHCCHHHHHHHhCCCH---HHHHHHHHhhc
Confidence 5789999999999966 89999998764
No 297
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=61.33 E-value=7.1 Score=25.50 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
-..+.+| . +.+.+.| ...|+++||++.|+.
T Consensus 10 ~~Il~aA--~-----~lf~~~G~~~ts~~~IA~~aGvs 40 (197)
T 2gen_A 10 DEILQAA--L-----ACFSEHGVDATTIEMIRDRSGAS 40 (197)
T ss_dssp HHHHHHH--H-----HHHHHHCTTTCCHHHHHHHHCCC
T ss_pred HHHHHHH--H-----HHHHHcCcccCCHHHHHHHHCCC
Confidence 3455566 2 4455556 789999999999984
No 298
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=61.31 E-value=6.6 Score=26.35 Aligned_cols=38 Identities=8% Similarity=0.113 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCCCCCcccHHH
Q 041844 36 INSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIHPTKTRCLHF 83 (97)
Q Consensus 36 ~~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~~~~~~~L~R 83 (97)
.....+.+| .+.+.+.| ...|+.+||++.|+.. ..+++
T Consensus 40 ~r~~Il~AA-------~~lf~e~G~~~~tv~~IA~~AGvs~---~tlY~ 78 (214)
T 2guh_A 40 SRSLIVDAA-------GRAFATRPYREITLKDIAEDAGVSA---PLIIK 78 (214)
T ss_dssp HHHHHHHHH-------HHHHHHSCGGGCCHHHHHHHHTSCH---HHHHH
T ss_pred HHHHHHHHH-------HHHHHHcChhhcCHHHHHHHhCCCH---HHHHH
Confidence 445566677 45566666 6799999999999943 45544
No 299
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=61.26 E-value=4.4 Score=21.84 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVC 86 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR 86 (97)
...|..|||+.+|+++ ..++|.++
T Consensus 30 ~g~s~~eIA~~lgis~---~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSE---RKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHH
Confidence 3579999999999954 77777664
No 300
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=61.17 E-value=7 Score=25.48 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC--------CCCcccHHHHHHH
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH--------PTKTRCLHFLVCS 87 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~--------~~~~~~L~RlLR~ 87 (97)
-..+.+| .+.+.+.| ...|+++||++.|+. +++.+++.-+++.
T Consensus 12 ~~Il~aA-------~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y~yF~sKe~L~~~~~~~ 63 (204)
T 3anp_C 12 ERIFRAA-------MELFRNRGFQETTATEIAKAAHVSRGTFFNYYPYKEAVLLDYGSQ 63 (204)
T ss_dssp HHHHHHH-------HHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSTHHHHHHHHHH
T ss_pred HHHHHHH-------HHHHHHcCcccccHHHHHHHcCCchHHHHHHcCCHHHHHHHHHHH
Confidence 3456666 34455555 689999999999984 4455555555543
No 301
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=61.11 E-value=7.3 Score=25.23 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=16.9
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 28 ~l~~~~G~~~~ti~~Ia~~agvs 50 (207)
T 2rae_A 28 ELFTEQGFDATSVDEVAEASGIA 50 (207)
T ss_dssp HHHHHHCTTTSCHHHHHHHTTSC
T ss_pred HHHHHcCcccCCHHHHHHHhCCC
Confidence 4455555 678999999999984
No 302
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=61.10 E-value=5 Score=27.72 Aligned_cols=34 Identities=9% Similarity=0.185 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|..++-.|||+.+|++. ..++.-|+.|.+.|+++
T Consensus 37 G~~L~E~~La~~lgVSR---tpVREAl~~L~~eGlv~ 70 (222)
T 3ihu_A 37 GQRLVETDLVAHFGVGR---NSVREALQRLAAEGIVD 70 (222)
T ss_dssp TCEECHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCccCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEE
Confidence 46788999999999954 78999999999999986
No 303
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=61.06 E-value=5.4 Score=26.20 Aligned_cols=31 Identities=6% Similarity=0.156 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| .+.+.+.| ...|+++||++.|+.
T Consensus 16 r~~Il~aA-------~~lf~~~G~~~~s~~~IA~~agvs 47 (199)
T 3crj_A 16 TEEIMQAT-------YRALREHGYADLTIQRIADEYGKS 47 (199)
T ss_dssp HHHHHHHH-------HHHHHHHTTTTCCHHHHHHHHTSC
T ss_pred HHHHHHHH-------HHHHHHcCcccCCHHHHHHHhCCC
Confidence 34566666 34555666 789999999999983
No 304
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=61.03 E-value=5.6 Score=25.38 Aligned_cols=22 Identities=9% Similarity=0.289 Sum_probs=17.0
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|++
T Consensus 22 ~lf~~~G~~~~tv~~Ia~~agvs 44 (196)
T 3he0_A 22 QLIAESGFQGLSMQKLANEAGVA 44 (196)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTSC
T ss_pred HHHHHhCcccCCHHHHHHHhCCC
Confidence 4455555 679999999999984
No 305
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=60.98 E-value=7.3 Score=25.09 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
-..+.+| .+.+.+.| ...|+.+||++.|+.
T Consensus 17 ~~Il~aa-------~~l~~~~G~~~~ti~~Ia~~agvs 47 (220)
T 3lhq_A 17 QHILDVA-------LRLFSQQGVSATSLAEIANAAGVT 47 (220)
T ss_dssp HHHHHHH-------HHHHHHHCSTTCCHHHHHHHHTCC
T ss_pred HHHHHHH-------HHHHHHcCcccCCHHHHHHHhCCC
Confidence 4455556 34455555 679999999999984
No 306
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=60.78 E-value=7.1 Score=25.50 Aligned_cols=43 Identities=7% Similarity=0.149 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC--------CCCcccHHHHHHH
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH--------PTKTRCLHFLVCS 87 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~--------~~~~~~L~RlLR~ 87 (97)
-..+.+| .+.+.+.| ...|+++||++.|+. +++.+++.-+++.
T Consensus 13 ~~Il~aA-------~~lf~~~G~~~~s~~~Ia~~Agvskgt~Y~yF~sKe~L~~~~~~~ 64 (197)
T 2f07_A 13 EKILQAA-------IEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAEN 64 (197)
T ss_dssp HHHHHHH-------HHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSSTTHHHHHHHH
T ss_pred HHHHHHH-------HHHHHHhCcccCCHHHHHHHhCCCchHHHHhCCCHHHHHHHHHHH
Confidence 3455666 34455556 779999999999973 5555665555443
No 307
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=60.51 E-value=6 Score=25.25 Aligned_cols=22 Identities=5% Similarity=0.202 Sum_probs=17.3
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 18 ~l~~~~G~~~~t~~~IA~~agvs 40 (199)
T 3qbm_A 18 ALFNVSGYAGTAISDIMAATGLE 40 (199)
T ss_dssp HHHHHHCSTTCCHHHHHHHHTCC
T ss_pred HHHHHhCcCcCCHHHHHHHhCCC
Confidence 4455556 789999999999984
No 308
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=60.48 E-value=7.4 Score=25.57 Aligned_cols=30 Identities=0% Similarity=0.008 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
-..+.+| . +.+.+.| ...|+++||++.|+.
T Consensus 15 ~~Il~aA--~-----~lf~~~G~~~ts~~~IA~~aGvs 45 (211)
T 3bhq_A 15 REIIQAA--T-----AAFISKGYDGTSMEEIATKAGAS 45 (211)
T ss_dssp HHHHHHH--H-----HHHHHHCSTTCCHHHHHHHHTCC
T ss_pred HHHHHHH--H-----HHHHHhCcccCCHHHHHHHhCCC
Confidence 3456666 2 4455555 779999999999984
No 309
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=60.37 E-value=7.5 Score=25.22 Aligned_cols=30 Identities=7% Similarity=0.204 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
...+.+| .+.+.+.| ...|+.+||++.|+.
T Consensus 11 ~~Il~aA-------~~lf~~~G~~~~t~~~IA~~agvs 41 (199)
T 2o7t_A 11 EHIITTT-------CNLYRTHHHDSLTMENIAEQAGVG 41 (199)
T ss_dssp HHHHHHH-------HHHHHHSCGGGCCHHHHHHHHTCC
T ss_pred HHHHHHH-------HHHHHHCCCccCCHHHHHHHhCCC
Confidence 3455566 35566666 678999999999984
No 310
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=60.35 E-value=7.3 Score=25.26 Aligned_cols=30 Identities=3% Similarity=0.060 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
-..+.+| . +.+.+.| ...|+.+||++.|+.
T Consensus 22 ~~Il~aA--~-----~lf~~~G~~~~t~~~IA~~agvs 52 (216)
T 3qqa_A 22 EKIKAVA--L-----ELFLTKGYQETSLSDIIKLSGGS 52 (216)
T ss_dssp HHHHHHH--H-----HHHHHTCTTTCCHHHHHHHHTTS
T ss_pred HHHHHHH--H-----HHHHHcChhhCCHHHHHHHhCCC
Confidence 4455666 3 4455566 779999999999984
No 311
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=60.17 E-value=5.9 Score=25.95 Aligned_cols=44 Identities=9% Similarity=0.218 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC--------CCCcccHHHHHHHH
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH--------PTKTRCLHFLVCSL 88 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~--------~~~~~~L~RlLR~L 88 (97)
-..+.+| . +.+.+.| ...|+++||++.|+. +++.+++..+++..
T Consensus 12 ~~Il~aA--~-----~lf~~~G~~~~s~~~IA~~aGvsk~tlY~~F~sKe~L~~a~~~~~ 64 (203)
T 3cdl_A 12 ESIVQAA--I-----AEFGDRGFEITSMDRIAARAEVSKRTVYNHFPSKEELFAEMLQRL 64 (203)
T ss_dssp HHHHHHH--H-----HHHHHHCTTTCCHHHHHHHTTSCHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHH--H-----HHHHHcCchhcCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence 4456666 3 3444555 689999999999973 44555555555443
No 312
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=60.11 E-value=7.4 Score=25.60 Aligned_cols=30 Identities=3% Similarity=0.096 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
-..+.+| .+.+.+.| ...|+.+||++.|+.
T Consensus 11 ~~Il~aA-------~~lf~~~G~~~~s~~~IA~~aGvs 41 (202)
T 2d6y_A 11 ARIFEAA-------VAEFARHGIAGARIDRIAAEARAN 41 (202)
T ss_dssp HHHHHHH-------HHHHHHHTTTSCCHHHHHHHHTCC
T ss_pred HHHHHHH-------HHHHHHcCcccCCHHHHHHHhCCC
Confidence 3455666 34455555 689999999999984
No 313
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=59.94 E-value=5.4 Score=27.08 Aligned_cols=29 Identities=7% Similarity=0.257 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~ 74 (97)
..++.+| + +.+.+.| ..|+.+||+++|+.
T Consensus 14 ~~Il~aA--~-----~l~~~~G-~~s~~~IA~~aGvs 42 (213)
T 2g7g_A 14 ERIAEAA--L-----ELVDRDG-DFRMPDLARHLNVQ 42 (213)
T ss_dssp HHHHHHH--H-----HHHHHHS-SCCHHHHHHHTTSC
T ss_pred HHHHHHH--H-----HHHHHcC-CCCHHHHHHHhCCC
Confidence 3456666 3 4455566 99999999999984
No 314
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=59.58 E-value=7.4 Score=27.67 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=29.5
Q ss_pred CCCC-CHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPM-TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~-s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|..+ |-.|||+..|++. ..+++-++.|+..|++.
T Consensus 31 g~~lPse~~La~~~~vSr---~tvr~Al~~L~~~G~i~ 65 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGISR---MTVRQALSNLVNEGLLY 65 (243)
T ss_dssp TCBCCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred cCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCcEE
Confidence 4566 8999999999944 78999999999999875
No 315
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=59.13 E-value=10 Score=26.23 Aligned_cols=31 Identities=10% Similarity=0.208 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-.++.+| + +++.+.| ..+|+.+||+++|+.
T Consensus 18 r~~Il~aA--~-----~l~~~~G~~~~s~~~IA~~aGvs 49 (237)
T 2hxo_A 18 RERIVGAA--V-----ELLDTVGERGLTFRALAERLATG 49 (237)
T ss_dssp HHHHHHHH--H-----HHHHHTTTTTCCHHHHHHHHTSC
T ss_pred HHHHHHHH--H-----HHHHhcCcccCCHHHHHHHHCCC
Confidence 34566666 3 4455555 689999999999984
No 316
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=59.01 E-value=8 Score=24.43 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=17.0
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 19 ~l~~~~G~~~~ti~~Ia~~agvs 41 (194)
T 2g7s_A 19 TLIIRGGYNSFSYADISQVVGIR 41 (194)
T ss_dssp HHHHHHCGGGCCHHHHHHHHCCC
T ss_pred HHHHHcCcccCCHHHHHHHhCCC
Confidence 4455555 678999999999984
No 317
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=58.97 E-value=6.3 Score=25.13 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=16.8
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 19 ~l~~~~G~~~~t~~~Ia~~agvs 41 (206)
T 3dew_A 19 ELFAQKGFYGVSIRELAQAAGAS 41 (206)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTCC
T ss_pred HHHhcCCcccCcHHHHHHHhCCC
Confidence 4444555 679999999999984
No 318
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=58.75 E-value=8.1 Score=25.09 Aligned_cols=30 Identities=7% Similarity=0.114 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
-..+.+| . +.+.+.| ...|+.+||++.|+.
T Consensus 14 ~~Il~aA--~-----~lf~~~G~~~~ti~~Ia~~agvs 44 (216)
T 3f0c_A 14 ELIINAA--Q-----KRFAHYGLCKTTMNEIASDVGMG 44 (216)
T ss_dssp HHHHHHH--H-----HHHHHHCSSSCCHHHHHHHHTCC
T ss_pred HHHHHHH--H-----HHHHHcCCCcCCHHHHHHHhCCC
Confidence 3455566 3 3455555 679999999999984
No 319
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=58.40 E-value=8.6 Score=24.76 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| .+.+.+.| ...|+.+||++.|+.
T Consensus 18 r~~Il~aa-------~~lf~~~G~~~~t~~~Ia~~agvs 49 (213)
T 2qtq_A 18 RDLLLQTA-------SNIMREGDVVDISLSELSLRSGLN 49 (213)
T ss_dssp HHHHHHHH-------HHHHHHHTSSCCCHHHHHHHHCCC
T ss_pred HHHHHHHH-------HHHHHHcCcccccHHHHHHHhCCC
Confidence 34455566 24454555 689999999999984
No 320
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=58.17 E-value=7.9 Score=27.39 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=29.5
Q ss_pred CCCC-CHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPM-TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~-s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|..+ |-.|||+..|++. ..+++-++.|+..|++.
T Consensus 26 g~~lPse~~La~~~~vSr---~tvr~Al~~L~~~g~i~ 60 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSK---STITKSLELLEQKGAIF 60 (239)
T ss_dssp TCBCCCHHHHHHHTTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCCCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCcEE
Confidence 4567 8999999999954 78999999999999875
No 321
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=58.17 E-value=6.6 Score=25.68 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| . +.+.+.| ...|+++||++.|+.
T Consensus 14 r~~Il~aA--~-----~lf~~~Gy~~ts~~~IA~~agvs 45 (205)
T 1rkt_A 14 QAEILEAA--K-----TVFKRKGFELTTMKDVVEESGFS 45 (205)
T ss_dssp HHHHHHHH--H-----HHHHHHCSTTCCHHHHHHHHTSC
T ss_pred HHHHHHHH--H-----HHHHHcCcccCCHHHHHHHHCCC
Confidence 34566666 3 4455556 789999999999983
No 322
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=58.12 E-value=6 Score=25.19 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=16.8
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 21 ~lf~~~G~~~~t~~~IA~~agvs 43 (197)
T 3rd3_A 21 RIMAVKGFSGVGLNEILQSAGVP 43 (197)
T ss_dssp HHHHHHCSTTCCHHHHHHHHTCC
T ss_pred HHHHHCCcccCCHHHHHHHhCCC
Confidence 4454555 679999999999984
No 323
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=58.07 E-value=8.6 Score=25.58 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 36 INSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 36 ~~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
..-..+.+| . +.+.+.| ...|+.+||++.|+.
T Consensus 36 ~r~~Il~aA--~-----~lf~~~G~~~~t~~~IA~~AGvs 68 (221)
T 3g7r_A 36 ARARLLGTA--T-----RIFYAEGIHSVGIDRITAEAQVT 68 (221)
T ss_dssp HHHHHHHHH--H-----HHHHHHCSTTSCHHHHHHHHTCC
T ss_pred HHHHHHHHH--H-----HHHHHhCcccCCHHHHHHHhCCC
Confidence 345566666 3 4455556 789999999999984
No 324
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=57.87 E-value=8.5 Score=25.16 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 39 MSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 39 ~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
..+.+| . +.+.+.| ...|+.+||++.|+.
T Consensus 14 ~Il~aA--~-----~lf~~~G~~~~s~~~IA~~aGvs 43 (210)
T 3vib_A 14 HLMLAA--L-----ETFYRKGIARTSLNEIAQAAGVT 43 (210)
T ss_dssp HHHHHH--H-----HHHHHHCTTTCCHHHHHHHHTSC
T ss_pred HHHHHH--H-----HHHHHhCcccCCHHHHHHHHCcC
Confidence 455566 2 4455556 789999999999984
No 325
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=57.85 E-value=6.4 Score=26.00 Aligned_cols=22 Identities=5% Similarity=0.208 Sum_probs=16.6
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+++||++.|+.
T Consensus 19 ~lf~~~Gy~~~s~~~IA~~AGvs 41 (206)
T 1vi0_A 19 EVIAENGYHQSQVSKIAKQAGVA 41 (206)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTSC
T ss_pred HHHHHhCcccCCHHHHHHHhCCC
Confidence 4445555 678999999999984
No 326
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=57.74 E-value=6.6 Score=25.79 Aligned_cols=30 Identities=3% Similarity=0.035 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
...+.+| .+.+.+.| ...|+++||++.|+.
T Consensus 12 ~~Il~AA-------~~lf~~~G~~~~s~~~IA~~AGvs 42 (203)
T 2np5_A 12 ERLAAAL-------FDVAAESGLEGASVREVAKRAGVS 42 (203)
T ss_dssp HHHHHHH-------HHHHHHHCGGGCCHHHHHHHHTCC
T ss_pred HHHHHHH-------HHHHHHhChhhccHHHHHHHhCCC
Confidence 4456666 34455555 678999999999983
No 327
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=57.66 E-value=8.1 Score=25.38 Aligned_cols=31 Identities=6% Similarity=0.028 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
....+.+| .+.+.+.| ..+|+.+||++.|+.
T Consensus 14 r~~Il~aA-------~~l~~e~G~~~~s~~~IA~~agvs 45 (198)
T 3cjd_A 14 REKLIDLA-------EAQIEAEGLASLRARELARQADCA 45 (198)
T ss_dssp HHHHHHHH-------HHHHHHHCGGGCCHHHHHHHHTSC
T ss_pred HHHHHHHH-------HHHHHhCChhhcCHHHHHHHhCCC
Confidence 34456666 34455555 679999999999984
No 328
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=57.65 E-value=4 Score=26.01 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=15.5
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 23 ~lf~~~G~~~~t~~~IA~~agvs 45 (199)
T 3on2_A 23 STLEKDGVDGLSLRQLAREAGVS 45 (199)
T ss_dssp HHHHHHCGGGCCHHHHHHHTC--
T ss_pred HHHHhcChhhhhHHHHHHHhCCC
Confidence 4455555 678999999999974
No 329
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=57.64 E-value=6.8 Score=25.08 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| .+.+.+.| ...|+.+||++.|+.
T Consensus 19 r~~Il~aa-------~~lf~~~G~~~~ti~~Ia~~agvs 50 (208)
T 3cwr_A 19 RESIVGAA-------QRLLSSGGAAAMTMEGVASEAGIA 50 (208)
T ss_dssp HHHHHHHH-------HHHHHHHCGGGCCHHHHHHHHTCC
T ss_pred HHHHHHHH-------HHHHHHcCHHhccHHHHHHHhCCC
Confidence 34455556 34455555 678999999999984
No 330
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=57.48 E-value=8.4 Score=24.22 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
+.-...+|.+..+..+ ++..|+.+|+-|...|+++.
T Consensus 27 g~~i~~ei~~~~~~~i-s~GtlYp~L~rLe~~GlI~~ 62 (99)
T 2co5_A 27 KKRLRSEILKRFDIDI-SDGVLYPLIDSLIDDKILRE 62 (99)
T ss_dssp GGGHHHHHHHHHCCBC-CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhCCCC-CCCcHHHHHHHHHHCCCEEE
Confidence 3445678888876544 66899999999999998863
No 331
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=57.29 E-value=8.6 Score=25.98 Aligned_cols=30 Identities=7% Similarity=0.110 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
-..|.+| . +.+.+.| ...|+++||++.|+.
T Consensus 10 ~~Il~AA--~-----~lF~e~G~~~ts~~~IA~~AGvs 40 (235)
T 2fbq_A 10 ERILDAA--E-----QLFAEKGFAETSLRLITSKAGVN 40 (235)
T ss_dssp HHHHHHH--H-----HHHHHHCSTTCCHHHHHHHHTSC
T ss_pred HHHHHHH--H-----HHHHHcCccccCHHHHHHHhCCC
Confidence 4566666 3 4455566 689999999999984
No 332
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=57.15 E-value=7 Score=25.77 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
-..+.+| .+.+.+.| ...|+++||++.|+.
T Consensus 14 ~~Il~aA-------~~lf~~~G~~~~s~~~IA~~aGvs 44 (219)
T 2w53_A 14 EGILDAA-------EACFHEHGVARTTLEMIGARAGYT 44 (219)
T ss_dssp HHHHHHH-------HHHHHHHCTTTCCHHHHHHHHTSC
T ss_pred HHHHHHH-------HHHHHHhCcccCCHHHHHHHhCCC
Confidence 4456666 34455555 779999999999973
No 333
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=56.67 E-value=6.5 Score=25.81 Aligned_cols=29 Identities=7% Similarity=-0.054 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
...+.+| .+.+.+.| . .|+.+||++.|++
T Consensus 15 ~~Il~aA-------~~lf~~~G~~-~s~~~IA~~agvs 44 (224)
T 1t33_A 15 SQLIAAA-------LAQFGEYGLH-ATTRDIAALAGQN 44 (224)
T ss_dssp HHHHHHH-------HHHHHHHGGG-SCHHHHHHHHTSC
T ss_pred HHHHHHH-------HHHHHHhCcc-ccHHHHHHHhCCC
Confidence 4456666 34455556 7 9999999999984
No 334
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=56.62 E-value=27 Score=27.82 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=38.7
Q ss_pred hhhHHhHHHHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 29 LDNTFSFINSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 29 ~~l~~~~~~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++-.||.+.+.+..+- +.. |+.|+.+|+..++.++ ..++.-|-.|..+|++.
T Consensus 13 i~~~FG~~~~~V~~~L----------l~~--G~ltL~~I~~~t~L~~---~~Vk~~L~vLIQh~lV~ 64 (534)
T 2xub_A 13 LQEHFGEIVEKIGVHL----------IRT--GSQPLRVIAHDTGTSL---DQVKKALCVLVQHNLVS 64 (534)
T ss_dssp HHHHHHHHHHHHHHHH----------HHH--CSEEHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred HHHhcChHHHHHHHHH----------Hhc--CCcCHHHHHHHhCCCH---HHHHHHHHHHHhcCCee
Confidence 5556666655444333 333 7999999999999955 88999999999998763
No 335
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=56.45 E-value=8.4 Score=21.99 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHhCCCC
Q 041844 60 KPMTLNQLLGALQIHP 75 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~ 75 (97)
..+|..|||+.+|+++
T Consensus 29 ~~~s~~eIA~~l~is~ 44 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTR 44 (73)
T ss_dssp SCCCHHHHHHHHTCCH
T ss_pred CCCCHHHHHHHHCCCH
Confidence 5799999999999954
No 336
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=56.40 E-value=5.7 Score=25.22 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=16.8
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 21 ~l~~~~G~~~~ti~~Ia~~agvs 43 (196)
T 3col_A 21 AIILAEGPAGVSTTKVAKRVGIA 43 (196)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTSC
T ss_pred HHHHhcCcccCCHHHHHHHhCCc
Confidence 4455555 679999999999984
No 337
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=56.38 E-value=9 Score=25.72 Aligned_cols=30 Identities=10% Similarity=0.258 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
-..+.+| .+.+.+.| ..+|+.+||++.|++
T Consensus 16 ~~Il~AA-------~~l~~~~G~~~~tv~~IA~~agvs 46 (231)
T 2qib_A 16 QQLIGVA-------LDLFSRRSPDEVSIDEIASAAGIS 46 (231)
T ss_dssp HHHHHHH-------HHHHHHSCGGGCCHHHHHHHHTSC
T ss_pred HHHHHHH-------HHHHHHcCchhcCHHHHHHHhCCC
Confidence 4455566 34555666 679999999999984
No 338
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=56.25 E-value=9.5 Score=25.38 Aligned_cols=30 Identities=10% Similarity=0.279 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
-..+.+| .+.+.+.| ...|+++||++.|+.
T Consensus 12 ~~Il~aA-------~~lf~~~Gy~~ts~~~IA~~AGvs 42 (215)
T 1ui5_A 12 ATIIGAA-------ADLFDRRGYESTTLSEIVAHAGVT 42 (215)
T ss_dssp HHHHHHH-------HHHHHHHCTTTCCHHHHHHHHTCC
T ss_pred HHHHHHH-------HHHHHHhCcccCCHHHHHHHhCCC
Confidence 4456666 34455556 789999999999984
No 339
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=56.24 E-value=15 Score=24.67 Aligned_cols=30 Identities=7% Similarity=0.213 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
...+.+| .+.+.++| ...|+.+||++.|+.
T Consensus 10 ~~Il~aA-------~~l~~~~G~~~~tv~~Ia~~agvs 40 (213)
T 3ni7_A 10 DAIVDTA-------VELAAHTSWEAVRLYDIAARLAVS 40 (213)
T ss_dssp HHHHHHH-------HHHHHHSCSTTCCHHHHHHHTTSC
T ss_pred HHHHHHH-------HHHHHHcCccccCHHHHHHHhCCC
Confidence 4456666 34556666 789999999999984
No 340
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=56.14 E-value=9 Score=27.13 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=28.3
Q ss_pred CCCC-CHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPM-TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~-s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|..+ |-.|||+..|++. ..+++-++.|+..|++.
T Consensus 30 g~~lPse~~La~~~~vSr---~tvr~Al~~L~~~G~i~ 64 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSR---TTIRRAVDLLVEEGLVV 64 (236)
T ss_dssp CC--CCHHHHHHHTTCCH---HHHHHHHHHHHHTTSEE
T ss_pred cCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 4567 8999999999954 78999999999999875
No 341
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=55.93 E-value=9.6 Score=25.55 Aligned_cols=31 Identities=6% Similarity=0.110 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| .+.+.+.| ..+|+.+||++.|+.
T Consensus 45 r~~Il~aA-------~~l~~~~G~~~~tv~~IA~~AGvs 76 (229)
T 3bni_A 45 LTRILDAC-------ADLLDEVGYDALSTRAVALRADVP 76 (229)
T ss_dssp HHHHHHHH-------HHHHHHHCTTTCCHHHHHHHHTCC
T ss_pred HHHHHHHH-------HHHHHhcChhhccHHHHHHHHCCC
Confidence 34556666 34555555 679999999999984
No 342
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=55.88 E-value=5 Score=25.53 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=16.4
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|++
T Consensus 25 ~lf~~~G~~~~ti~~Ia~~agvs 47 (156)
T 3ljl_A 25 DQLLRLGYDKMSYTTLSQQTGVS 47 (156)
T ss_dssp HHHHHTHHHHCCHHHHHHHHTCC
T ss_pred HHHHHhChhhcCHHHHHHHHCCC
Confidence 4444555 568999999999984
No 343
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=55.70 E-value=7.5 Score=25.44 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
...+.+| .+.+.+.| ...|+.+||++.|+.
T Consensus 18 ~~Il~aA-------~~lf~~~G~~~~s~~~IA~~agvs 48 (221)
T 3c2b_A 18 NAVLDQA-------LRLLVEGGEKALTTSGLARAANCS 48 (221)
T ss_dssp HHHHHHH-------HHHHHHHCGGGCCHHHHHHHHTCC
T ss_pred HHHHHHH-------HHHHHhCCcccCCHHHHHHHhCCC
Confidence 4455666 24455555 679999999999984
No 344
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=55.64 E-value=10 Score=26.52 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=25.3
Q ss_pred hHHHhhC-CCCCCHHHHHHHhCCCCCCcccHHHHHHH
Q 041844 52 PDIIHNH-TKPMTLNQLLGALQIHPTKTRCLHFLVCS 87 (97)
Q Consensus 52 ~D~La~~-~gp~s~~ELA~~~g~~~~~~~~L~RlLR~ 87 (97)
.+.|.++ ..++|+++||+.+|+++ ..|.|+.+.
T Consensus 175 ~~~i~~~~~~~~sl~~lA~~~~~S~---~~l~r~fk~ 208 (276)
T 3gbg_A 175 SCLVKSDITRNWRWADICGELRTNR---MILKKELES 208 (276)
T ss_dssp HHHHHHTTTSCCCHHHHHHHHTCCH---HHHHHHHHT
T ss_pred HHHHHHhhcCCCCHHHHHHHHCcCH---HHHHHHHHH
Confidence 3445444 36899999999999955 889998873
No 345
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=55.37 E-value=9.3 Score=28.92 Aligned_cols=33 Identities=9% Similarity=0.218 Sum_probs=25.4
Q ss_pred hCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 57 NHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 57 ~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++++.+|+.+|+..+|+.+ .-|+..|..+|++.
T Consensus 204 ~~~~~isi~~is~~Tgi~~------~Dii~tL~~l~~l~ 236 (276)
T 3to7_A 204 EHQKEITIDEISSMTSMTT------TDILHTAKTLNILR 236 (276)
T ss_dssp HTCSEEEHHHHHHHHCBCH------HHHHHHHHHTTCEE
T ss_pred hcCCceeHHHHHHHhCCCH------HHHHHHHHHCCCEE
Confidence 3456899999999999944 44777888888764
No 346
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=55.27 E-value=5.2 Score=25.48 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=16.4
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 19 ~l~~~~G~~~~t~~~Ia~~agvs 41 (183)
T 1zk8_A 19 EIADANGVQEVTLASLAQTLGVR 41 (183)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTSC
T ss_pred HHHHhcCccccCHHHHHHHcCCC
Confidence 4455555 578999999999973
No 347
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=55.21 E-value=7.6 Score=25.09 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
-..+.+| . +.+.+.| ...|+.+||++.|+.
T Consensus 29 ~~Il~aA--~-----~l~~~~G~~~~t~~~Ia~~agvs 59 (217)
T 3mvp_A 29 NKILQVA--K-----DLFSDKTYFNVTTNEIAKKADVS 59 (217)
T ss_dssp HHHHHHH--H-----HHHHHHCGGGCCHHHHHHHHTSC
T ss_pred HHHHHHH--H-----HHHHHcCccccCHHHHHHHhCCC
Confidence 4455566 3 3445555 679999999999984
No 348
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=55.16 E-value=8.2 Score=25.55 Aligned_cols=31 Identities=6% Similarity=0.167 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..|.+| . +.+.+.| ...|+++||++.|+.
T Consensus 26 r~~Il~aA--~-----~lf~e~G~~~~s~~~IA~~aGvs 57 (214)
T 2oer_A 26 VASILEAA--V-----QVLASEGAQRFTTARVAERAGVS 57 (214)
T ss_dssp HHHHHHHH--H-----HC------CCCCHHHHHHHHTCC
T ss_pred HHHHHHHH--H-----HHHHhhCcccccHHHHHHHhCCC
Confidence 34566677 3 3445555 779999999999984
No 349
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=55.11 E-value=12 Score=25.36 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=25.9
Q ss_pred CCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 62 MTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 62 ~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
-|..|||+++|+.. +..+.+.++.|+..|.+.
T Consensus 26 ps~~elA~~lgiss--~~tv~~~~~~l~~~~~l~ 57 (202)
T 1jhf_A 26 PTRAEIAQRLGFRS--PNAAEEHLKALARKGVIE 57 (202)
T ss_dssp CCHHHHHHHTTCSS--HHHHHHHHHHHHHTTSEE
T ss_pred ccHHHHHHHhCCCC--hHHHHHHHHHHHHCCCce
Confidence 48999999999940 378999999998877654
No 350
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=54.94 E-value=10 Score=25.49 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
-..+.+| .+.+.+.| ...|+.+||++.|+.
T Consensus 47 ~~Il~aA-------~~lf~e~G~~~~t~~~IA~~aGvs 77 (236)
T 3q0w_A 47 LAILATA-------ENLLEDRPLADISVDDLAKGAGIS 77 (236)
T ss_dssp HHHHHHH-------HHHHHHSCGGGCCHHHHHHHHTCC
T ss_pred HHHHHHH-------HHHHHHcCcccCCHHHHHHHhCCc
Confidence 4456666 34555666 679999999999984
No 351
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=54.61 E-value=10 Score=20.30 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLV 85 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlL 85 (97)
..+|..|||..+|+++ ..+.++.
T Consensus 13 ~g~s~~~lA~~~gis~---~~i~~~e 35 (66)
T 2xi8_A 13 KKISQSELAALLEVSR---QTINGIE 35 (66)
T ss_dssp TTCCHHHHHHHHTSCH---HHHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHH
Confidence 4578888888888743 4444443
No 352
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=54.44 E-value=8.1 Score=25.24 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=16.6
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 14 ~lf~~~G~~~~s~~~IA~~Agvs 36 (212)
T 3rh2_A 14 ELFNEHGERTITTNHIAAHLDIS 36 (212)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTCC
T ss_pred HHHHHcCcccCCHHHHHHHhCCC
Confidence 3445555 678999999999984
No 353
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=54.17 E-value=7.9 Score=25.67 Aligned_cols=30 Identities=10% Similarity=0.016 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
-..|.+| .+.+.+.| ...|+++||++.|+.
T Consensus 12 ~~Il~aA-------~~lf~~~G~~~~s~~~IA~~aGvs 42 (209)
T 2gfn_A 12 RALADAV-------LALIAREGISAVTTRAVAEESGWS 42 (209)
T ss_dssp HHHHHHH-------HHHHHHHCGGGCCHHHHHHHHSSC
T ss_pred HHHHHHH-------HHHHHHhCcccCCHHHHHHHHCCC
Confidence 3455666 24455555 678999999999984
No 354
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=53.83 E-value=8.7 Score=25.86 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 36 INSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 36 ~~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.....+.+| .+.+.+.| ...|+.+||++.|+.
T Consensus 17 ~r~~il~aA-------~~l~~~~G~~~~s~~~IA~~agvs 49 (216)
T 2oi8_A 17 VRAEIKDHA-------WEQIATAGASALSLNAIAKRMGMS 49 (216)
T ss_dssp HHHHHHHHH-------HHHHHHHCTTSCCHHHHHHHTTCC
T ss_pred HHHHHHHHH-------HHHHHhcCcccCCHHHHHHHhCCC
Confidence 344566666 34455555 679999999999984
No 355
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=53.71 E-value=8.6 Score=25.16 Aligned_cols=22 Identities=5% Similarity=0.226 Sum_probs=17.0
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 34 ~lf~~~G~~~~t~~~IA~~agvs 56 (214)
T 2zb9_A 34 ELLLTEGTAQLTFERVARVSGVS 56 (214)
T ss_dssp HHHHHHCGGGCCHHHHHHHHCCC
T ss_pred HHHHHhCcccCCHHHHHHHHCCC
Confidence 4455555 679999999999984
No 356
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=53.70 E-value=9.2 Score=25.58 Aligned_cols=31 Identities=10% Similarity=0.184 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
....|.+| . +.+.+.| ...|+.+||++.|+.
T Consensus 37 r~~Il~AA--~-----~lf~~~G~~~~s~~~IA~~AGvs 68 (237)
T 3kkd_A 37 RQAILDAA--M-----RLIVRDGVRAVRHRAVAAEAQVP 68 (237)
T ss_dssp HHHHHHHH--H-----HHHHHHCGGGCCHHHHHHHHTSC
T ss_pred HHHHHHHH--H-----HHHHhcChhhcCHHHHHHHhCCC
Confidence 34566666 3 4455556 679999999999984
No 357
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=53.69 E-value=11 Score=24.45 Aligned_cols=22 Identities=5% Similarity=0.279 Sum_probs=17.0
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 21 ~l~~~~G~~~~ti~~Ia~~agvs 43 (216)
T 3s5r_A 21 TLFAEQGIAATTMAEIAASVGVN 43 (216)
T ss_dssp HHHHHHCTTTCCHHHHHHTTTCC
T ss_pred HHHHHcCcccCCHHHHHHHHCCC
Confidence 4455555 679999999999984
No 358
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=53.33 E-value=6.8 Score=25.72 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
....|.+| . +.+.+.| ...|+++||++.|+.
T Consensus 14 r~~Il~aA--~-----~lf~~~G~~~~s~~~IA~~aGvs 45 (200)
T 2hyj_A 14 RGRILGRA--A-----EIASEEGLDGITIGRLAEELEMS 45 (200)
T ss_dssp HHHHHHHH--H-----HHHHHHCGGGCCHHHHHHHHTCC
T ss_pred HHHHHHHH--H-----HHHHHcCcccCCHHHHHHHhCCC
Confidence 34566666 3 4455555 678999999999973
No 359
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=53.25 E-value=5.6 Score=23.58 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=16.1
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFL 84 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~Rl 84 (97)
..+|..|||+++|+++ ..|.++
T Consensus 21 ~glT~~~LA~~~Gvs~---stls~~ 42 (74)
T 1neq_A 21 RKLSLSALSRQFGYAP---TTLANA 42 (74)
T ss_dssp TSCCHHHHHHHHSSCH---HHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHH
Confidence 5689999999999843 555544
No 360
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=53.24 E-value=7.6 Score=25.30 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
....+.+| .+.+.+.| ...|+.+||++.|+.
T Consensus 13 r~~Il~aA-------~~lf~~~G~~~~s~~~IA~~agvs 44 (212)
T 2ras_A 13 RARLVDVA-------QAIVEERGGAGLTLSELAARAGIS 44 (212)
T ss_dssp HHHHHHHH-------HHHHHHHTSSCCCHHHHHHHHTSC
T ss_pred HHHHHHHH-------HHHHHHhCcccCcHHHHHHHhCCC
Confidence 34456666 34455555 789999999999983
No 361
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=53.12 E-value=12 Score=26.06 Aligned_cols=31 Identities=10% Similarity=0.239 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-.++.+| + +.+.+.| ...|+.+||+++|+.
T Consensus 31 r~~Il~aA--~-----~l~~~~G~~~~s~~~IA~~aGvs 62 (241)
T 2hxi_A 31 TEQILDAA--A-----ELLLAGDAETFSVRKLAASLGTD 62 (241)
T ss_dssp HHHHHHHH--H-----HHHSSSSCCCCCHHHHHHHTTSC
T ss_pred HHHHHHHH--H-----HHHHhcCcccCCHHHHHHHhCcC
Confidence 34566667 3 4455555 679999999999984
No 362
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=53.11 E-value=7.7 Score=29.38 Aligned_cols=32 Identities=9% Similarity=0.183 Sum_probs=20.4
Q ss_pred CCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 58 HTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 58 ~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+.+.+|+.||++++|+.+ .-|+..|..+|++.
T Consensus 205 ~~~~isi~~is~~T~i~~------~Dii~tL~~l~~l~ 236 (278)
T 2pq8_A 205 FRGTLSIKDLSQMTSITQ------NDIISTLQSLNMVK 236 (278)
T ss_dssp ------CHHHHHHHCBCH------HHHHHHHHHTTCEE
T ss_pred cCCCccHHHHHHHhCCCH------HHHHHHHHHCCCEE
Confidence 347999999999999943 44777777888764
No 363
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=52.94 E-value=6.8 Score=27.62 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=27.6
Q ss_pred hHHHhhC-CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 041844 52 PDIIHNH-TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVR 90 (97)
Q Consensus 52 ~D~La~~-~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa 90 (97)
.+.|.++ ..+.|+++||+.+|+++ ..|.|+.+..+.
T Consensus 9 ~~~i~~~~~~~~~~~~la~~~~~s~---~~l~r~f~~~~g 45 (292)
T 1d5y_A 9 LIWLEGHLDQPLSLDNVAAKAGYSK---WHLQRMFKDVTG 45 (292)
T ss_dssp HHHHHTTSSSSCCCHHHHTTTSSCH---HHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCCHHHHHHHHCcCH---HHHHHHHHHHHC
Confidence 3555554 37899999999999955 889999886553
No 364
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=52.77 E-value=9.4 Score=25.95 Aligned_cols=32 Identities=3% Similarity=0.124 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 36 INSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 36 ~~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
..-..+.+| .+.+.+.| ..+|+.+||++.|+.
T Consensus 47 ~r~~Il~aA-------~~lf~~~G~~~~t~~~IA~~aGvs 79 (245)
T 3aqt_A 47 TRARLITSA-------RTLMAERGVDNVGIAEITEGANIG 79 (245)
T ss_dssp HHHHHHHHH-------HHHHHHHCGGGCCHHHHHHHTTSC
T ss_pred HHHHHHHHH-------HHHHHhcCcccCcHHHHHHHhCCC
Confidence 345556666 34455555 679999999999984
No 365
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=52.75 E-value=14 Score=25.94 Aligned_cols=32 Identities=6% Similarity=0.158 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 36 INSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 36 ~~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
..-..+.+| .+.+.+.| ..+|+.+||++.|+.
T Consensus 42 tr~~Il~AA-------~~lf~e~G~~~~S~~~IA~~AGVs 74 (273)
T 3c07_A 42 TRALILETA-------MRLFQERGYDRTTMRAIAQEAGVS 74 (273)
T ss_dssp HHHHHHHHH-------HHHHHHTCSTTCCHHHHHHHHTSC
T ss_pred HHHHHHHHH-------HHHHHhCCccccCHHHHHHHHCCC
Confidence 345566666 35566666 779999999999984
No 366
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=52.48 E-value=9.7 Score=21.41 Aligned_cols=16 Identities=13% Similarity=0.194 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHhCCCC
Q 041844 60 KPMTLNQLLGALQIHP 75 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~ 75 (97)
..+|..|||+.+|+++
T Consensus 24 ~g~s~~eIA~~lgis~ 39 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTR 39 (68)
T ss_dssp SCCCHHHHHHHHTCCH
T ss_pred CCCCHHHHHHHHCcCH
Confidence 5799999999999954
No 367
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=52.18 E-value=8.6 Score=26.04 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=16.5
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||+++|+.
T Consensus 13 ~l~~~~G~~~~s~~~IA~~aGvs 35 (209)
T 3bqy_A 13 DLLNESGLDTLTMRRLAQAMDVQ 35 (209)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTSC
T ss_pred HHHHhCCcccCCHHHHHHHhCCC
Confidence 3344445 678999999999984
No 368
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=52.10 E-value=12 Score=25.49 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| . +.+.+.| ...|+.+||++.|+.
T Consensus 25 r~~Il~aA--~-----~lf~~~G~~~~s~~~IA~~agvs 56 (231)
T 2zcx_A 25 EEAILDAA--R-----ELGTERGIREITLTDIAATVGMH 56 (231)
T ss_dssp HHHHHHHH--H-----HHHHHHCSTTCCHHHHHHHHTSC
T ss_pred HHHHHHHH--H-----HHHHhCCcccCCHHHHHHHhCCC
Confidence 34566666 3 4455555 679999999999984
No 369
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=51.98 E-value=11 Score=26.80 Aligned_cols=34 Identities=9% Similarity=0.205 Sum_probs=29.6
Q ss_pred CCCC-CHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPM-TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~-s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|..+ |-.|||+..|++. ..+++-|+.|+..|++.
T Consensus 33 g~~lPse~~La~~~~vSr---~tvr~Al~~L~~~G~i~ 67 (248)
T 3f8m_A 33 GDPFPAEREIAEQFEVAR---ETVRQALRELLIDGRVE 67 (248)
T ss_dssp TCBCCCHHHHHHHTTCCH---HHHHHHHHHHHHTTSEE
T ss_pred CCcCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 4567 8999999999954 78999999999999874
No 370
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=51.69 E-value=12 Score=24.93 Aligned_cols=22 Identities=5% Similarity=0.161 Sum_probs=17.0
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 25 ~lf~~~G~~~~s~~~IA~~AGvs 47 (208)
T 3v6g_A 25 RVIARQGLGGLSHRRVAAEANVP 47 (208)
T ss_dssp HHHHHHCTTCCCHHHHHHHHTSC
T ss_pred HHHHHhCcccCCHHHHHHHhCCC
Confidence 4455555 679999999999984
No 371
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=51.64 E-value=15 Score=23.35 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| .+.+.+. ...|+.+||++.|+.
T Consensus 16 r~~Il~aA-------~~lf~~~-~~~t~~~Ia~~agvs 45 (190)
T 2v57_A 16 RRAILDAA-------MLVLADH-PTAALGDIAAAAGVG 45 (190)
T ss_dssp HHHHHHHH-------HHHHTTC-TTCCHHHHHHHHTCC
T ss_pred HHHHHHHH-------HHHHHHc-CCCCHHHHHHHhCCC
Confidence 34456666 3445555 789999999999984
No 372
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=51.07 E-value=6.8 Score=25.62 Aligned_cols=22 Identities=5% Similarity=0.157 Sum_probs=16.1
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+++||++.|+.
T Consensus 16 ~lf~~~Gy~~~s~~~IA~~Agvs 38 (202)
T 2id6_A 16 EVFGKKGYDRATTDEIAEKAGVA 38 (202)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTCC
T ss_pred HHHHHcCcccCCHHHHHHHhCCC
Confidence 3444444 568999999999984
No 373
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=51.03 E-value=13 Score=27.08 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=24.1
Q ss_pred hHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHH
Q 041844 52 PDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSL 88 (97)
Q Consensus 52 ~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~L 88 (97)
...|+ .|.|.|.++||+.+|.+. +.+.++|..+
T Consensus 28 lr~la-~Grpv~~~~LA~~~g~~~---~~v~~~L~~l 60 (220)
T 3f2g_A 28 LRELA-KGRPVSRTTLAGILDWPA---ERVAAVLEQA 60 (220)
T ss_dssp HHHHT-TTSCBCHHHHHHHHTCCH---HHHHHHHHHC
T ss_pred HHHHh-cCCCCCHHHHHHHhCcCH---HHHHHHHHhC
Confidence 45566 579999999999999843 5555555544
No 374
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=51.00 E-value=9.8 Score=25.20 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=16.4
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|++
T Consensus 16 ~lf~~~G~~~~t~~~IA~~Agvs 38 (228)
T 3nnr_A 16 ELFNDKGERNITTNHIAAHLAIS 38 (228)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTCC
T ss_pred HHHHHhChhhcCHHHHHHHhCCC
Confidence 3444455 678999999999984
No 375
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=50.86 E-value=10 Score=25.69 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| . +.+.+.| ...|+.+||++.|+.
T Consensus 27 r~~Il~aA--~-----~l~~~~G~~~~s~~~IA~~aGvs 58 (211)
T 3fiw_A 27 RETVITEA--L-----DLLDEVGLDGVSTRRLAKRLGVE 58 (211)
T ss_dssp HHHHHHHH--H-----HHHHHHCGGGCCHHHHHHHHTSC
T ss_pred HHHHHHHH--H-----HHHHhcCcccCCHHHHHHHhCCC
Confidence 34556666 3 3444444 568999999999984
No 376
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=50.82 E-value=19 Score=23.33 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=32.5
Q ss_pred HhcChhHHHhhCCCCCCHHHHHHHhC---CCCCCcccHHHHHHHHHhcCccc
Q 041844 47 IQVGIPDIIHNHTKPMTLNQLLGALQ---IHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 47 veLgI~D~La~~~gp~s~~ELA~~~g---~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
+++-|--+| . +|++--||...+. ... ++..|+++|+-|...|+++
T Consensus 22 l~~~IL~lL--~-~p~~GYei~~~l~~~~~~i-s~gtlY~~L~rLe~~GlI~ 69 (123)
T 3ri2_A 22 LVMLVLSQL--R-EPAYGYALVKSLADHGIPI-EANTLYPLMRRLESQGLLA 69 (123)
T ss_dssp HHHHHHHHT--T-SCEEHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHH--c-CCCCHHHHHHHHHHhCCCC-CcchHHHHHHHHHHCCCEE
Confidence 444445555 3 6888888888752 222 5589999999999999886
No 377
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=50.27 E-value=10 Score=25.28 Aligned_cols=31 Identities=3% Similarity=0.143 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| . +.+.+.| ...|+++||++.|+.
T Consensus 30 r~~Il~AA--~-----~lf~~~G~~~~t~~~IA~~aGvs 61 (217)
T 3hta_A 30 RQRIIDAA--I-----RVVGQKGIAGLSHRTVAAEADVP 61 (217)
T ss_dssp HHHHHHHH--H-----HHHHHHTGGGCCHHHHHHHHTCC
T ss_pred HHHHHHHH--H-----HHHHHcCcccCCHHHHHHHcCCC
Confidence 34455666 3 4455555 578999999999984
No 378
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=50.07 E-value=18 Score=23.39 Aligned_cols=31 Identities=6% Similarity=0.093 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~ 74 (97)
....+.+| .+.+.+.|-..|+.+||++.|+.
T Consensus 15 r~~Il~aA-------~~lf~~~G~~~t~~~IA~~agvs 45 (196)
T 2qwt_A 15 RARVLEVA-------YDTFAAEGLGVPMDEIARRAGVG 45 (196)
T ss_dssp HHHHHHHH-------HHHHHHTCTTSCHHHHHHHTTSC
T ss_pred HHHHHHHH-------HHHHHhcCCCCCHHHHHHHhCCC
Confidence 34456666 34455555358999999999984
No 379
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=49.97 E-value=10 Score=25.31 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| .+.+.+.| ...|+.+||++.|+.
T Consensus 42 r~~Il~aA-------~~lf~~~G~~~~t~~~IA~~Agvs 73 (225)
T 2id3_A 42 REAVLLAA-------GDALAADGFDALDLGEIARRAGVG 73 (225)
T ss_dssp HHHHHHHH-------HHHHHHHCGGGCCHHHHHHHHTCC
T ss_pred HHHHHHHH-------HHHHHHhCcccCCHHHHHHHHCCC
Confidence 44556666 34455555 679999999999984
No 380
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=49.95 E-value=14 Score=24.15 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcChhHHHhhCCCCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHTKPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| . +.+.+.|...|+.+||++.|+.
T Consensus 22 r~~Il~aA--~-----~lf~~~G~~~s~~~IA~~aGvs 52 (215)
T 2hku_A 22 RDALFTAA--T-----ELFLEHGEGVPITQICAAAGAH 52 (215)
T ss_dssp HHHHHHHH--H-----HHHHHHCTTSCHHHHHHHHTCC
T ss_pred HHHHHHHH--H-----HHHHHhCCCcCHHHHHHHhCCC
Confidence 34556666 3 3333333679999999999984
No 381
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=49.88 E-value=13 Score=25.51 Aligned_cols=32 Identities=9% Similarity=0.136 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 36 INSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 36 ~~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.....+.+| .+.+.+.| ..+|+.+||++.|+.
T Consensus 49 tr~~Il~AA-------~~lf~e~G~~~~Ti~~IA~~AGvs 81 (260)
T 2of7_A 49 TREAIRAAT-------YGLIRQQGYEATTVEQIAERAEVS 81 (260)
T ss_dssp HHHHHHHHH-------HHHHHHHCSTTCCHHHHHHHHTSC
T ss_pred HHHHHHHHH-------HHHHHHhCcccccHHHHHHHhCCC
Confidence 344556666 34455555 679999999999984
No 382
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=49.85 E-value=12 Score=22.23 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHhCCCC
Q 041844 60 KPMTLNQLLGALQIHP 75 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~ 75 (97)
..+|..|||..+|+++
T Consensus 37 ~~~s~~EIA~~lgis~ 52 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTR 52 (87)
T ss_dssp SCCCHHHHHHHHTCCH
T ss_pred CCCCHHHHHHHHCCCH
Confidence 6899999999999954
No 383
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=49.49 E-value=5.4 Score=25.50 Aligned_cols=22 Identities=0% Similarity=0.141 Sum_probs=15.9
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+++||++.|+.
T Consensus 18 ~l~~~~G~~~~t~~~IA~~agvs 40 (186)
T 2jj7_A 18 KKFGERGYEGTSIQEIAKEAKVN 40 (186)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTSC
T ss_pred HHHHHcCCccCCHHHHHHHhCCC
Confidence 3444444 568999999999984
No 384
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=49.32 E-value=9.9 Score=27.64 Aligned_cols=41 Identities=10% Similarity=0.224 Sum_probs=32.9
Q ss_pred cChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 49 VGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 49 LgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
|.+..+|+-+ +|+|-.||++..|+.+ ..++|.|...|++.+
T Consensus 103 LEtLaiIAy~-QPITR~eI~~irGv~~------~~~v~~Lle~gLI~e 143 (219)
T 2z99_A 103 LETLAVVAYR-QPVTRARVSAVRGVNV------DAVMRTLLARGLITE 143 (219)
T ss_dssp HHHHHHHHHH-CSEEHHHHHHHHTSCC------HHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCCCH------HHHHHHHHHCCCEEE
Confidence 3455666654 7999999999999942 689999999999875
No 385
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=49.30 E-value=13 Score=26.94 Aligned_cols=34 Identities=6% Similarity=0.046 Sum_probs=29.6
Q ss_pred CCCC-CHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPM-TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~-s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|..+ |-.|||+..|++. ..+++-|+.|+..|++.
T Consensus 50 g~~lPse~~La~~~~vSr---~tvr~Al~~L~~~G~i~ 84 (272)
T 3eet_A 50 HTRLPSQARIREEYGVSD---TVALEARKVLMAEGLVE 84 (272)
T ss_dssp TSBCCCHHHHHHHHTCCH---HHHHHHHHHHHHTTSEE
T ss_pred cCCCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCCEE
Confidence 3566 8999999999954 78999999999999875
No 386
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=48.92 E-value=11 Score=28.69 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=32.3
Q ss_pred hhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 51 IPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 51 I~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
|.+.+-.+ .-.+.+++++.+|++. ...+|.++.|+..|++.+
T Consensus 302 ll~~l~~~-p~~t~~~~~~~~gvS~---~Ta~r~L~~L~e~GiL~~ 343 (373)
T 2qc0_A 302 LVQVIFEQ-PYCRIQNLVESGLAKR---QTASVYLKQLCDIGVLEE 343 (373)
T ss_dssp HHHHHHHC-SEEEHHHHHHTSSSCH---HHHHHHHHHHHHTTSCEE
T ss_pred HHHHHHhC-CcccHHHHHHHhCCCH---HHHHHHHHHHHHCCcEEE
Confidence 34444431 2358999999999954 899999999999999864
No 387
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=48.83 E-value=13 Score=25.23 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 38 SMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 38 s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
...+.+| .+.+.+.| ...|+.+||++.|+.
T Consensus 46 ~~Il~AA-------~~lf~~~G~~~~t~~~IA~~aGvs 76 (255)
T 3g1o_A 46 LAILATA-------ENLLEDRPLADISVDDLAKGAGIS 76 (255)
T ss_dssp HHHHHHH-------HHHHTTSCGGGCCHHHHHHHHTCC
T ss_pred HHHHHHH-------HHHHHHcCCccCcHHHHHHHhCCC
Confidence 3456666 34555555 679999999999984
No 388
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=48.80 E-value=11 Score=25.51 Aligned_cols=22 Identities=9% Similarity=0.397 Sum_probs=17.0
Q ss_pred HHHhhC-C-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNH-T-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~-~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+. | ...|+.+||+++|+.
T Consensus 16 ~l~~~~~G~~~~s~~~IA~~aGvs 39 (220)
T 1z0x_A 16 SLLEKSPTLEQLSMRKVAKQLGVQ 39 (220)
T ss_dssp HHHHHSCCGGGCCHHHHHHHHTSC
T ss_pred HHHHhcCCcccCCHHHHHHHcCCC
Confidence 455566 5 578999999999984
No 389
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=48.50 E-value=5.6 Score=25.65 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=14.9
Q ss_pred HhhCC-CCCCHHHHHHHhCCC
Q 041844 55 IHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 55 La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.| ...|+.+||++.|+.
T Consensus 31 f~~~G~~~~s~~~IA~~aGvs 51 (212)
T 3loc_A 31 FSQFGFHGTRLEQIAELAGVS 51 (212)
T ss_dssp HHHHHHHHCCHHHHHHHHTSC
T ss_pred HHHhCcccCCHHHHHHHHCcC
Confidence 44444 568899999999984
No 390
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=48.20 E-value=4.1 Score=26.15 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=15.6
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 14 ~l~~~~G~~~~ti~~IA~~agvs 36 (189)
T 3geu_A 14 TLFSEKGYDGTTLDDIAKSVNIK 36 (189)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTCC
T ss_pred HHHHHcCcccCCHHHHHHHhCCC
Confidence 3344444 568899999999984
No 391
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=48.05 E-value=12 Score=30.50 Aligned_cols=42 Identities=7% Similarity=0.013 Sum_probs=33.8
Q ss_pred ChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHh-----cCccc
Q 041844 50 GIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVR-----SGFFN 95 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa-----~gif~ 95 (97)
-|.+.|..+ +.+|..+|++.++.++ ....|.|+.|.. .|+++
T Consensus 434 ~iL~~l~~~-~~it~~~la~~l~~s~---~~~~~~L~~L~~~~~~~~glie 480 (583)
T 3lmm_A 434 IVLYLLFQR-PFITIDVVARGLQSGK---EAARNALEAARQTTVAGAPLII 480 (583)
T ss_dssp HHHHHHHHS-SSBCHHHHHHHHTSCH---HHHHHHHHHHHTCEETTEESEE
T ss_pred HHHHHHHHC-CCcCHHHHHHHhCcCH---HHHHHHHHHHHhhhccccceEE
Confidence 455666554 6899999999999954 889999999998 77765
No 392
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=47.78 E-value=5.9 Score=27.42 Aligned_cols=41 Identities=12% Similarity=0.293 Sum_probs=32.3
Q ss_pred cChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 49 VGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 49 LgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
|.+..+|+-+ +|+|-.||++..|++ ...++|.|...|++.+
T Consensus 97 LEtLaiIay~-qPiTR~eI~~irGv~------~~~~v~~L~e~glI~e 137 (162)
T 1t6s_A 97 LEVLAVVAWH-QPVTKGEIQQIRGAS------PDYSIDRLLARGLIEV 137 (162)
T ss_dssp HHHHHHHHHH-CSEEHHHHHHHHTCC------CCSHHHHHHHTTSEEE
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCCC------HHHHHHHHHHCCCEEE
Confidence 4455667654 799999999999983 4568899999998875
No 393
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=47.75 E-value=22 Score=21.13 Aligned_cols=37 Identities=8% Similarity=0.170 Sum_probs=26.2
Q ss_pred hhHHHhhCC-CCCCHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 041844 51 IPDIIHNHT-KPMTLNQLLGALQIHPTKTRCLHFLVCSLVR 90 (97)
Q Consensus 51 I~D~La~~~-gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa 90 (97)
|.+.|..+| =..++.|||..+|++ ..-+.++++.+-.
T Consensus 37 iI~~LD~~GYL~~~l~eia~~l~~~---~~eve~vL~~lQ~ 74 (76)
T 2k9l_A 37 LLNYLNEKGFLSKSVEEISDVLRCS---VEELEKVRQKVLR 74 (76)
T ss_dssp HHHHCTTSSTTCCCHHHHHHHHTSC---HHHHHHHHHHHHT
T ss_pred HHHhcCCCCCCCCCHHHHHHHcCCC---HHHHHHHHHHHhc
Confidence 456665544 357899999999984 4778888776643
No 394
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=47.68 E-value=15 Score=20.28 Aligned_cols=15 Identities=20% Similarity=-0.004 Sum_probs=11.0
Q ss_pred CCCCHHHHHHHhCCC
Q 041844 60 KPMTLNQLLGALQIH 74 (97)
Q Consensus 60 gp~s~~ELA~~~g~~ 74 (97)
..+|..|||..+|++
T Consensus 22 ~g~s~~~lA~~~gis 36 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKS 36 (76)
T ss_dssp TTCCHHHHHHHHTCC
T ss_pred cCCCHHHHHHHHCcC
Confidence 457788888888763
No 395
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=47.64 E-value=11 Score=21.08 Aligned_cols=15 Identities=27% Similarity=0.014 Sum_probs=10.9
Q ss_pred CCCCHHHHHHHhCCC
Q 041844 60 KPMTLNQLLGALQIH 74 (97)
Q Consensus 60 gp~s~~ELA~~~g~~ 74 (97)
..+|..|||..+|++
T Consensus 20 ~glsq~~lA~~~gis 34 (73)
T 3omt_A 20 KGKTNLWLTETLDKN 34 (73)
T ss_dssp HTCCHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHCcC
Confidence 457778888888763
No 396
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=47.06 E-value=6.3 Score=25.19 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=16.0
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 25 ~l~~~~G~~~~t~~~IA~~agvs 47 (191)
T 4aci_A 25 RCFAEHGYEGATVRRLEEATGKS 47 (191)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTCC
T ss_pred HHHHHhCcccCCHHHHHHHHCCC
Confidence 3344444 568999999999984
No 397
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=46.86 E-value=13 Score=25.92 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=30.1
Q ss_pred ChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCc
Q 041844 50 GIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGF 93 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gi 93 (97)
.|.+.|.++ +.+|..|||+.+++++ ..++|=+..|.--++
T Consensus 16 ~i~~~l~~~-~~~~~~~la~~~~vs~---~TiRrDl~eL~~~~l 55 (190)
T 4a0z_A 16 AIRQQIDSN-PFITDHELSDLFQVSI---QTIRLDRTYLNIPEL 55 (190)
T ss_dssp HHHHHHHHC-TTCCHHHHHHHHTSCH---HHHHHHHHHHTCCCH
T ss_pred HHHHHHHHC-CCEeHHHHHHHHCCCH---HHHHHHHHHhcCcch
Confidence 355667653 6899999999999954 788888877765543
No 398
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=46.83 E-value=21 Score=21.47 Aligned_cols=31 Identities=10% Similarity=0.201 Sum_probs=24.4
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFF 94 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif 94 (97)
..|..+||..+|+++ ..++|.++.....|.+
T Consensus 33 g~s~~~ia~~lgis~---~Tv~~w~~~~~~~g~~ 63 (128)
T 1pdn_C 33 GIRPCVISRQLRVSH---GCVSKILNRYQETGSI 63 (128)
T ss_dssp TCCHHHHHHHHTCCH---HHHHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHCcCH---HHHHHHHHHHHhhCCc
Confidence 478999999999954 8899998877665643
No 399
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=46.78 E-value=6.4 Score=25.27 Aligned_cols=22 Identities=5% Similarity=0.140 Sum_probs=16.0
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 31 ~l~~~~G~~~~t~~~Ia~~agvs 53 (203)
T 3mnl_A 31 AIASKGGYEAVQMRAVADRADVA 53 (203)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTCC
T ss_pred HHHHHcCCccCCHHHHHHHcCCC
Confidence 3444444 568999999999984
No 400
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=46.47 E-value=6.4 Score=24.94 Aligned_cols=22 Identities=9% Similarity=0.225 Sum_probs=16.0
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|++
T Consensus 19 ~l~~~~G~~~~t~~~Ia~~agvs 41 (195)
T 3pas_A 19 REVADHGFSATSVGKIAKAAGLS 41 (195)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTSC
T ss_pred HHHHHcChHhcCHHHHHHHhCCC
Confidence 3344444 568999999999984
No 401
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=46.38 E-value=13 Score=26.54 Aligned_cols=31 Identities=3% Similarity=0.195 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-.++.+| + +.+.+.| ...|+.+||+++|+.
T Consensus 29 r~~Il~AA--~-----~L~~e~G~~~~Smr~IA~~aGVs 60 (267)
T 2y2z_A 29 RDQIVRAA--V-----KVADTEGVEAASMRRVAAELGAG 60 (267)
T ss_dssp HHHHHHHH--H-----HHHHHHCTTTCCHHHHHHHHTCC
T ss_pred HHHHHHHH--H-----HHHHhcCcccCCHHHHHHHhCCC
Confidence 34566666 3 3344445 679999999999984
No 402
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=46.25 E-value=25 Score=23.07 Aligned_cols=22 Identities=9% Similarity=0.369 Sum_probs=17.4
Q ss_pred HH-HhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DI-IHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~-La~~~-gp~s~~ELA~~~g~~ 74 (97)
+. +.+.| ..+|+.+||++.|+.
T Consensus 30 ~lF~~~~g~~~~tv~~Ia~~Agvs 53 (185)
T 3o60_A 30 RFYVEDRTFESISIKDLCEQARVS 53 (185)
T ss_dssp HHHHTTCCTTTCCHHHHHHHHTCC
T ss_pred HHHHhcCCcccCCHHHHHHHhCCC
Confidence 44 45556 789999999999984
No 403
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=46.15 E-value=11 Score=26.30 Aligned_cols=31 Identities=10% Similarity=0.227 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcChhHHHhhCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.-.++.+| + +.+.+.| ...|+.+||+++|+.
T Consensus 21 r~~Il~AA--~-----~l~~e~G~~~~S~~~IA~~aGvs 52 (243)
T 2g7l_A 21 RRWIVDTA--V-----ALMRAEGLEKVTMRRLAQELDTG 52 (243)
T ss_dssp HHHHHHHH--H-----HHHHHHCSSSCCHHHHHHHTTSC
T ss_pred HHHHHHHH--H-----HHHHhcCchhcCHHHHHHHHCCC
Confidence 34556666 3 3444445 679999999999984
No 404
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=46.13 E-value=38 Score=21.80 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=31.7
Q ss_pred hHHHhhCC-CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 52 PDIIHNHT-KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 52 ~D~La~~~-gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+...... .-+|..+.-..+.. |...+.||.++|..-|++.
T Consensus 57 I~~yr~nP~~yLT~t~~r~~l~g---Dv~~i~RVh~FLe~wGLIN 98 (104)
T 2fq3_A 57 VNSYRLNPNEYFSVTTARRNVSG---DAAALFRLHKFLTKWGLIN 98 (104)
T ss_dssp HHHHHHCTTSCCCHHHHHHHSCS---CHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHhCCceeeeHHHHHHHccc---cHHHHHHHHHHHHHcCeec
Confidence 34444443 67899998887754 6799999999999999875
No 405
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=46.05 E-value=26 Score=24.55 Aligned_cols=41 Identities=17% Similarity=0.057 Sum_probs=31.5
Q ss_pred ChhHHHhhCCCCCCHHHHHHHh-----CCCCCCcccHHHHHHHHHhcCccc
Q 041844 50 GIPDIIHNHTKPMTLNQLLGAL-----QIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 50 gI~D~La~~~gp~s~~ELA~~~-----g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+...++. ++.+.++|+..+ +. +...+.+.++.|...|++.
T Consensus 286 ~~l~~la~--g~~~~~~l~~~~~~~~~~~---~~~~~~~~l~~L~~~gli~ 331 (350)
T 2qen_A 286 DILRAIAL--GYNRWSLIRDYLAVKGTKI---PEPRLYALLENLKKMNWIV 331 (350)
T ss_dssp HHHHHHHT--TCCSHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCEE
Confidence 45566665 578999998876 66 3367899999999999875
No 406
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=46.04 E-value=14 Score=20.59 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=11.2
Q ss_pred CCCCHHHHHHHhCCC
Q 041844 60 KPMTLNQLLGALQIH 74 (97)
Q Consensus 60 gp~s~~ELA~~~g~~ 74 (97)
..+|..|||..+|++
T Consensus 19 ~g~sq~~lA~~~gis 33 (78)
T 3b7h_A 19 QNLTINRVATLAGLN 33 (78)
T ss_dssp TTCCHHHHHHHHTCC
T ss_pred cCCCHHHHHHHHCcC
Confidence 457888888888863
No 407
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=46.04 E-value=9.3 Score=20.61 Aligned_cols=23 Identities=4% Similarity=-0.084 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLV 85 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlL 85 (97)
..+|..|||..+|+++ ..+.|+.
T Consensus 17 ~g~s~~~lA~~~gis~---~~i~~~e 39 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSN---VAISQWE 39 (68)
T ss_dssp HTCCHHHHHHHHTSCH---HHHHHHH
T ss_pred cCCCHHHHHHHHCCCH---HHHHHHH
Confidence 3578888888888743 4455443
No 408
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=45.97 E-value=13 Score=24.31 Aligned_cols=31 Identities=10% Similarity=0.187 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcChhHHHh-hCC-CCCCHHHHHHHhCCC
Q 041844 37 NSMSLKCVKLIQVGIPDIIH-NHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 37 ~s~aL~~a~~veLgI~D~La-~~~-gp~s~~ELA~~~g~~ 74 (97)
.-..+.+| .+.+. +.| ...|+.+||++.|++
T Consensus 13 r~~Il~aa-------~~l~~~~~G~~~~ti~~Ia~~Agvs 45 (220)
T 3lsj_A 13 RHALMSAA-------RHLMESGRGFGSLSLREVTRAAGIV 45 (220)
T ss_dssp HHHHHHHH-------HHHTTTSCCGGGCCHHHHHHHHTSC
T ss_pred HHHHHHHH-------HHHHHhCCCcccCCHHHHHHHhCCC
Confidence 34455566 34555 555 679999999999984
No 409
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=45.84 E-value=11 Score=25.24 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=16.6
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 41 ~lf~~~G~~~~t~~~IA~~Agvs 63 (230)
T 2iai_A 41 QVFIERGYDGTSMEHLSKAAGIS 63 (230)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTSC
T ss_pred HHHHHcCccccCHHHHHHHHCCC
Confidence 4444555 678999999999983
No 410
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=45.79 E-value=13 Score=25.93 Aligned_cols=27 Identities=15% Similarity=0.237 Sum_probs=18.8
Q ss_pred HHhhCC-CCCCHHHHHHHhCCCCCCcccHHH
Q 041844 54 IIHNHT-KPMTLNQLLGALQIHPTKTRCLHF 83 (97)
Q Consensus 54 ~La~~~-gp~s~~ELA~~~g~~~~~~~~L~R 83 (97)
.+.+.| ..+|+.+||+++|+.+ ..|++
T Consensus 18 l~~~~G~~~~S~r~IA~~aGvs~---~tlY~ 45 (234)
T 2opt_A 18 ILDAEGLDALSMRRLAQELKTGH---ASLYA 45 (234)
T ss_dssp HHHHHCGGGCCHHHHHHHHTCCH---HHHHH
T ss_pred HHHhCCccccCHHHHHHHHCCCh---hHHHH
Confidence 344444 5789999999999843 55554
No 411
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=45.62 E-value=6.6 Score=26.04 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=15.4
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+++||++.|+.
T Consensus 14 ~lf~~~G~~~~s~~~IA~~AGvs 36 (208)
T 2g3b_A 14 TAIAQRGIRGLRVNDVAEVAGVS 36 (208)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTSC
T ss_pred HHHHHhCcccCCHHHHHHHhCCC
Confidence 3344444 568899999999984
No 412
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=45.59 E-value=6.8 Score=25.22 Aligned_cols=22 Identities=5% Similarity=0.214 Sum_probs=16.0
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 25 ~l~~~~G~~~~t~~~Ia~~agvs 47 (215)
T 3e7q_A 25 ACLKRHGFQGASVRKICAEAGVS 47 (215)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTCC
T ss_pred HHHHHcCcccCCHHHHHHHhCCC
Confidence 3344444 578999999999984
No 413
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=45.37 E-value=16 Score=19.81 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=9.4
Q ss_pred CCCCHHHHHHHhCC
Q 041844 60 KPMTLNQLLGALQI 73 (97)
Q Consensus 60 gp~s~~ELA~~~g~ 73 (97)
..+|..|||..+|+
T Consensus 15 ~glsq~~lA~~~gi 28 (71)
T 1zug_A 15 LKMTQTELATKAGV 28 (71)
T ss_dssp TTCCHHHHHHHHTS
T ss_pred cCCCHHHHHHHhCC
Confidence 35667777777776
No 414
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=45.14 E-value=7 Score=25.20 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=13.9
Q ss_pred HhhCC-CCCCHHHHHHHhCCC
Q 041844 55 IHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 55 La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.| ...|+.+||++.|+.
T Consensus 21 ~~~~G~~~~t~~~IA~~agvs 41 (195)
T 3frq_A 21 LKRCGPIEFTLSGVAKEVGLS 41 (195)
T ss_dssp HHHHHHHHCCHHHHHHHHTCC
T ss_pred HHhhCcccCCHHHHHHHhCCC
Confidence 43434 467888888888874
No 415
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=45.12 E-value=15 Score=21.24 Aligned_cols=15 Identities=13% Similarity=0.047 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHhCCC
Q 041844 60 KPMTLNQLLGALQIH 74 (97)
Q Consensus 60 gp~s~~ELA~~~g~~ 74 (97)
..+|-.|||+.+|++
T Consensus 30 ~glsq~elA~~~gis 44 (83)
T 2a6c_A 30 SGLTQFKAAELLGVT 44 (83)
T ss_dssp TTCCHHHHHHHHTSC
T ss_pred cCCCHHHHHHHHCcC
Confidence 568889999998874
No 416
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=44.71 E-value=17 Score=19.88 Aligned_cols=23 Identities=9% Similarity=-0.067 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLV 85 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlL 85 (97)
..+|..|||..+|+++ ..+.|+.
T Consensus 25 ~g~s~~~lA~~~gis~---~~i~~~e 47 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDR---SYVGGVE 47 (74)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHH
Confidence 4578888888888743 4444443
No 417
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=44.03 E-value=6.3 Score=23.06 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhCCCC------------CCcccHHHHHHHHHhcCc
Q 041844 61 PMTLNQLLGALQIHP------------TKTRCLHFLVCSLVRSGF 93 (97)
Q Consensus 61 p~s~~ELA~~~g~~~------------~~~~~L~RlLR~Laa~gi 93 (97)
.+|..|||..+|+++ ..++...||++.....|+
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln~~~~vs~~t~~rV~~~a~~lgY 53 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGY 53 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTTCCCCSCHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCC
Confidence 468888888888621 133455667776666665
No 418
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=43.67 E-value=18 Score=19.49 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=8.3
Q ss_pred CCCHHHHHHHhCC
Q 041844 61 PMTLNQLLGALQI 73 (97)
Q Consensus 61 p~s~~ELA~~~g~ 73 (97)
.+|..|||..+|+
T Consensus 14 glsq~~lA~~~gi 26 (69)
T 1r69_A 14 GLNQAELAQKVGT 26 (69)
T ss_dssp TCCHHHHHHHHTS
T ss_pred CCCHHHHHHHHCc
Confidence 4566666666665
No 419
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=43.64 E-value=11 Score=20.94 Aligned_cols=23 Identities=4% Similarity=-0.084 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLV 85 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlL 85 (97)
..+|..|||+.+|+++ ..+.|+.
T Consensus 17 ~gls~~~lA~~~gis~---~~i~~~e 39 (76)
T 1adr_A 17 LKIRQAALGKMVGVSN---VAISQWE 39 (76)
T ss_dssp HTCCHHHHHHHHTSCH---HHHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHH
Confidence 3578888888888743 4454443
No 420
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=43.45 E-value=5 Score=32.71 Aligned_cols=41 Identities=10% Similarity=-0.025 Sum_probs=0.0
Q ss_pred hhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 51 IPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 51 I~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|.+.|.++ |.+|..||++.+|+++ ...+|+|+-|+..|++.
T Consensus 521 I~~~l~~~-g~it~~di~~l~~ls~---~qa~~~L~~Lv~~G~l~ 561 (583)
T 3lmm_A 521 AMLWLSEV-GDLATSDLMAMCGVSR---GTAKACVDGLVDEERVV 561 (583)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHc-CCcCHHHHHHHHCCCH---HHHHHHHHHHHHCCcEE
Confidence 44555443 7899999999999955 67899999999999875
No 421
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=43.42 E-value=12 Score=29.29 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=32.6
Q ss_pred cChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 49 VGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 49 LgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
-.|.+.|.. +|+++++|+.++|.++ ..+..+|-.|.-.|++.
T Consensus 331 ~~vl~~l~~--~~~~~D~l~~~~gl~~---~~v~~~L~~LEl~G~v~ 372 (382)
T 3maj_A 331 TRILALLGP--SPVGIDDLIRLSGISP---AVVRTILLELELAGRLE 372 (382)
T ss_dssp HHHHHHCCS--SCEEHHHHHHHHCCCH---HHHHHHHHHHHHTTCCE
T ss_pred HHHHHhhCC--CCCCHHHHHHHHCcCH---HHHHHHHHHHHhCCcEE
Confidence 356777743 7999999999999944 67777777788888765
No 422
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=43.22 E-value=22 Score=26.94 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=23.3
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
.+|+.||++++|+.+ .-|+..|..+|++.
T Consensus 212 ~isi~~is~~T~i~~------~Dii~tL~~l~~l~ 240 (280)
T 2ou2_A 212 QITINEISEITSIKK------EDVISTLQYLNLIN 240 (280)
T ss_dssp CCBHHHHHHHHCBCH------HHHHHHHHHTTCCC
T ss_pred ceeHHHHHHHhCCCH------HHHHHHHHHCCcEE
Confidence 799999999999954 33777888888764
No 423
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=43.05 E-value=19 Score=19.95 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLV 85 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlL 85 (97)
..+|..|||..+|+++ ..+.|+.
T Consensus 22 ~glsq~~lA~~~gis~---~~i~~~e 44 (77)
T 2b5a_A 22 KGVSQEELADLAGLHR---TYISEVE 44 (77)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHH
T ss_pred cCCCHHHHHHHHCCCH---HHHHHHH
Confidence 4578888888888742 4444443
No 424
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=42.80 E-value=15 Score=19.81 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHhCCCC
Q 041844 60 KPMTLNQLLGALQIHP 75 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~ 75 (97)
..+|..|||+.+|+++
T Consensus 12 ~g~s~~eIA~~l~is~ 27 (61)
T 2jpc_A 12 EGYTNHGISEKLHISI 27 (61)
T ss_dssp TSCCSHHHHHHTCSCH
T ss_pred cCCCHHHHHHHhCCCH
Confidence 3678999999999954
No 425
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=42.80 E-value=14 Score=21.08 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVC 86 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR 86 (97)
..+|..|||..+|+++ ..+.|+.+
T Consensus 24 ~glsq~~lA~~~gis~---~~i~~~e~ 47 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQ---ATISNFEN 47 (88)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHHH
T ss_pred cCCCHHHHHHHhCCCH---HHHHHHHc
Confidence 4688999999999843 56666654
No 426
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=42.65 E-value=15 Score=23.68 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=12.4
Q ss_pred hhCC-CCCCHHHHHHHhCCC
Q 041844 56 HNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 56 a~~~-gp~s~~ELA~~~g~~ 74 (97)
.+.| ...|+.+||++.|++
T Consensus 39 ~~~G~~~~t~~~Ia~~agvs 58 (212)
T 3nxc_A 39 SSDGSQRITTAKLAASVGVS 58 (212)
T ss_dssp C------CCHHHHHHHTTSC
T ss_pred hcCChhhcCHHHHHHHhCCC
Confidence 4445 689999999999984
No 427
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=42.32 E-value=17 Score=19.91 Aligned_cols=16 Identities=0% Similarity=-0.145 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHhCCCC
Q 041844 60 KPMTLNQLLGALQIHP 75 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~ 75 (97)
...|..|||+.+|+++
T Consensus 30 ~g~s~~eIA~~lgis~ 45 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPV 45 (70)
T ss_dssp SCCCHHHHHHHHTSCH
T ss_pred cCCCHHHHHHHHCcCH
Confidence 4689999999999954
No 428
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=42.19 E-value=23 Score=22.37 Aligned_cols=41 Identities=10% Similarity=-0.018 Sum_probs=30.0
Q ss_pred hHHHhhCCCCCCHHHHHHHhC-----CCCCCcccHHHHHHHHHhcCccc
Q 041844 52 PDIIHNHTKPMTLNQLLGALQ-----IHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 52 ~D~La~~~gp~s~~ELA~~~g-----~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
-.+|.. +|++--||...+. ... ++..|+++|+-|...|+++
T Consensus 28 L~lL~~--~~~~Gyei~~~l~~~~~~~~i-s~gtLY~~L~rLe~~GlI~ 73 (115)
T 2dql_A 28 LYVLLQ--GESYGTELIQQLETEHPTYRL-SDTVLYSAIKFLEDNRAIT 73 (115)
T ss_dssp HHHHTT--SCBCHHHHHHHHHHHCTTEEC-CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHh--CCCCHHHHHHHHHHHcCCCCC-CcchHHHHHHHHHHCCCEE
Confidence 344543 7888888877763 112 5589999999999999875
No 429
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=42.16 E-value=18 Score=21.88 Aligned_cols=15 Identities=20% Similarity=0.302 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHhCCC
Q 041844 60 KPMTLNQLLGALQIH 74 (97)
Q Consensus 60 gp~s~~ELA~~~g~~ 74 (97)
..+|..|||+++|+.
T Consensus 36 ~glTq~eLA~~~GiS 50 (88)
T 3t76_A 36 RDMKKGELREAVGVS 50 (88)
T ss_dssp TTCCHHHHHHHHTCC
T ss_pred cCCCHHHHHHHHCcC
Confidence 456777777777763
No 430
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=41.63 E-value=8.4 Score=25.71 Aligned_cols=22 Identities=5% Similarity=0.120 Sum_probs=15.0
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 41 ~lf~~~G~~~~s~~~IA~~aGvs 63 (226)
T 2pz9_A 41 EEFARHGIAGARVDRIAKQARTS 63 (226)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTSC
T ss_pred HHHHHhCcccCcHHHHHHHHCCC
Confidence 3344444 567899999998874
No 431
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=41.51 E-value=29 Score=22.05 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHhCCC
Q 041844 60 KPMTLNQLLGALQIH 74 (97)
Q Consensus 60 gp~s~~ELA~~~g~~ 74 (97)
..+|-.|||+.+|++
T Consensus 52 ~glTQ~eLA~~lGis 66 (120)
T 2o38_A 52 ARLSQAAAAARLGIN 66 (120)
T ss_dssp TTCCHHHHHHHHTCC
T ss_pred cCCCHHHHHHHHCcC
Confidence 578999999999974
No 432
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=41.37 E-value=20 Score=23.91 Aligned_cols=23 Identities=4% Similarity=0.085 Sum_probs=19.1
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHH
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVC 86 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR 86 (97)
..|..+||..+|++. ..++|+++
T Consensus 158 G~s~~~Ia~~l~is~---~tv~r~l~ 180 (183)
T 1gdt_A 158 GLGASHISKTMNIAR---STVYKVIN 180 (183)
T ss_dssp TCCHHHHHHHHTCCH---HHHHHHHH
T ss_pred CCCHHHHHHHHCcCH---HHHHHHHh
Confidence 479999999999954 78888875
No 433
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=41.35 E-value=5.9 Score=25.38 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=15.8
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|+.
T Consensus 22 ~lf~~~G~~~~ti~~IA~~agvs 44 (204)
T 3eup_A 22 PVFNVKGLAGTSLTDLTEATNLT 44 (204)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTCC
T ss_pred HHHHHcCcccCCHHHHHHHhCCC
Confidence 3344444 568999999999983
No 434
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=41.15 E-value=16 Score=25.04 Aligned_cols=23 Identities=4% Similarity=0.092 Sum_probs=18.8
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHH
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVC 86 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR 86 (97)
..|..+||..+|++. ..++|+++
T Consensus 175 G~s~~~Ia~~l~is~---~tv~r~l~ 197 (209)
T 2r0q_C 175 GQAISKIAKEVNITR---QTVYRIKH 197 (209)
T ss_dssp TCCHHHHHHHHTCCH---HHHHHHHT
T ss_pred CCCHHHHHHHHCcCH---HHHHHHHh
Confidence 479999999999944 77888776
No 435
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=40.99 E-value=12 Score=21.52 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVC 86 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR 86 (97)
..+|..|||..+|+++ ..+.++.+
T Consensus 22 ~gltq~elA~~~gis~---~~is~~E~ 45 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAK---SYLSSIER 45 (78)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 4688888888888743 55555543
No 436
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=40.62 E-value=8.9 Score=25.93 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHhCCC
Q 041844 60 KPMTLNQLLGALQIH 74 (97)
Q Consensus 60 gp~s~~ELA~~~g~~ 74 (97)
...|..+||+++|+.
T Consensus 22 ~~~s~~~IA~~~Gvs 36 (207)
T 2xpw_A 22 DGLTTRKLAQKLGIE 36 (207)
T ss_dssp HHCCHHHHHHHHTCC
T ss_pred ccCCHHHHHHHhCCC
Confidence 468899999999984
No 437
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=40.38 E-value=16 Score=21.70 Aligned_cols=25 Identities=4% Similarity=-0.126 Sum_probs=20.7
Q ss_pred CCHHHHHHHhCCCCCCcccHHHHHHHHH
Q 041844 62 MTLNQLLGALQIHPTKTRCLHFLVCSLV 89 (97)
Q Consensus 62 ~s~~ELA~~~g~~~~~~~~L~RlLR~La 89 (97)
.|..+||..+|+++ ..|+|.++...
T Consensus 39 ~s~~~iA~~~gIs~---sTl~rW~k~~~ 63 (87)
T 2elh_A 39 ESKASVARDIGVPE---STLRGWCKNED 63 (87)
T ss_dssp CCHHHHHHHHTCCH---HHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCH---HHHHHHHHHHH
Confidence 78999999999954 88999886543
No 438
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=40.37 E-value=13 Score=21.09 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLV 85 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlL 85 (97)
..+|..|||+++|+++ ..+.++.
T Consensus 14 ~glsq~~lA~~~gis~---~~i~~~e 36 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISR---QQLCNIE 36 (77)
T ss_dssp HTCCHHHHHHHHTSCH---HHHHHHH
T ss_pred cCCCHHHHHHHhCCCH---HHHHHHH
Confidence 4678888999888742 4444443
No 439
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=39.76 E-value=17 Score=21.35 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVC 86 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR 86 (97)
..+|..|||..+|+++ ..+.++.+
T Consensus 20 ~gltq~~lA~~~gis~---~~is~~e~ 43 (94)
T 2ict_A 20 LNVSLREFARAMEIAP---STASRLLT 43 (94)
T ss_dssp HTCCHHHHHHHHTCCH---HHHHHHHH
T ss_pred cCCCHHHHHHHhCCCH---HHHHHHHc
Confidence 3578888898888743 55555544
No 440
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=39.68 E-value=21 Score=22.31 Aligned_cols=16 Identities=13% Similarity=0.194 Sum_probs=14.3
Q ss_pred CCCCHHHHHHHhCCCC
Q 041844 60 KPMTLNQLLGALQIHP 75 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~ 75 (97)
.++|..|||..+|+++
T Consensus 38 e~~s~~EIA~~lgiS~ 53 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTR 53 (99)
T ss_pred CCCCHHHHHHHHCcCH
Confidence 6899999999999954
No 441
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=39.50 E-value=17 Score=21.72 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSG 92 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~g 92 (97)
..|+.++|..+|+++ ..|+|-++.....|
T Consensus 23 g~s~~~ia~~~gIs~---~tl~rW~~~~~~~g 51 (97)
T 2jn6_A 23 GASLQQIANDLGINR---VTLKNWIIKYGSNH 51 (97)
T ss_dssp GSCHHHHHHHHTSCH---HHHHHHHHHHCCCS
T ss_pred CChHHHHHHHHCcCH---HHHHHHHHHHhhcC
Confidence 578999999999954 88999887655444
No 442
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=39.41 E-value=13 Score=21.13 Aligned_cols=23 Identities=13% Similarity=0.002 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLV 85 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlL 85 (97)
..+|-.|||+.+|+++ ..+.|+.
T Consensus 26 ~gltq~elA~~~gis~---~~is~~e 48 (83)
T 3f6w_A 26 AGITQKELAARLGRPQ---SFVSKTE 48 (83)
T ss_dssp HTCCHHHHHHHHTSCH---HHHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHH
Confidence 4688999999999742 4444443
No 443
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=39.28 E-value=19 Score=28.08 Aligned_cols=27 Identities=4% Similarity=-0.004 Sum_probs=21.1
Q ss_pred CCC-CHHHHHHHhCCCCCCcccHHHHHHHHH
Q 041844 60 KPM-TLNQLLGALQIHPTKTRCLHFLVCSLV 89 (97)
Q Consensus 60 gp~-s~~ELA~~~g~~~~~~~~L~RlLR~La 89 (97)
+.. |..|+|+.+|+++ +.++|+-|.|-
T Consensus 64 ~~y~t~~~~a~~~g~~~---~~~~r~wralG 91 (407)
T 1y10_A 64 GTYVSAREISENYGVDL---ELLQRVQRAVG 91 (407)
T ss_dssp SCEECHHHHHHHHTCCH---HHHHHHHHHTT
T ss_pred cCcCCHHHHHHHhCCCH---HHHHHHHHHcC
Confidence 445 9999999999954 77888888553
No 444
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=39.15 E-value=30 Score=21.94 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=24.8
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFF 94 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif 94 (97)
..|..+||..+|+++ ..++|.++.....|.+
T Consensus 48 G~s~~~iA~~lgis~---~TV~rw~~~~~~~G~~ 78 (149)
T 1k78_A 48 GVRPCDISRQLRVSH---GCVSKILGRYYETGSI 78 (149)
T ss_dssp TCCHHHHHHHHTCCH---HHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHCcCH---HHHHHHHHHHHHcCCC
Confidence 478999999999954 8899998877666643
No 445
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=38.98 E-value=8.8 Score=25.14 Aligned_cols=22 Identities=5% Similarity=0.105 Sum_probs=1.4
Q ss_pred HHHhhCC-CCCCHHHHHHHhCCC
Q 041844 53 DIIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 53 D~La~~~-gp~s~~ELA~~~g~~ 74 (97)
+.+.+.| ...|+.+||++.|++
T Consensus 41 ~l~~~~G~~~~ti~~IA~~agvs 63 (212)
T 2np3_A 41 VCFAERGFDATSLRRIAETAGVD 63 (212)
T ss_dssp HHC--------------------
T ss_pred HHHHHcCcccccHHHHHHHcCCC
Confidence 4455555 668999999999973
No 446
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=38.98 E-value=31 Score=23.72 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHhC--CCCCCcccHHHHHHHHH
Q 041844 58 HTKPMTLNQLLGALQ--IHPTKTRCLHFLVCSLV 89 (97)
Q Consensus 58 ~~gp~s~~ELA~~~g--~~~~~~~~L~RlLR~La 89 (97)
.+.|+|+.+||+.++ ++ ...+..+|..|.
T Consensus 19 ~~~pvs~~~La~~~~~~~~---~~~v~~~l~~L~ 49 (162)
T 1t6s_A 19 SEEPVNLQTLSQITAHKFT---PSELQEAVDELN 49 (162)
T ss_dssp CSSCBCHHHHHHHTTCCCC---HHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCcCCC---HHHHHHHHHHHH
Confidence 468999999999999 63 356777766664
No 447
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=38.85 E-value=10 Score=25.77 Aligned_cols=21 Identities=5% Similarity=0.071 Sum_probs=15.0
Q ss_pred HHhhCC-CCCCHHHHHHHhCCC
Q 041844 54 IIHNHT-KPMTLNQLLGALQIH 74 (97)
Q Consensus 54 ~La~~~-gp~s~~ELA~~~g~~ 74 (97)
.+.+.| ...|+.+||++.|+.
T Consensus 30 lf~~~G~~~~t~~~IA~~aGvs 51 (251)
T 3npi_A 30 LFSELGFSDAKLEAIAKKSGMS 51 (251)
T ss_dssp HHHHHHHHHCCHHHHHHHHCCC
T ss_pred HHHHcCccccCHHHHHHHHCCC
Confidence 344444 568899999999984
No 448
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=38.82 E-value=14 Score=21.02 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=16.1
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLV 85 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlL 85 (97)
..+|..|||..+|+++ ..+.|+.
T Consensus 23 ~glsq~~lA~~~gis~---~~i~~~e 45 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDR---TYISGIE 45 (82)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHH
T ss_pred cCCCHHHHHHHhCcCH---HHHHHHH
Confidence 5688999999998843 4455543
No 449
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=38.76 E-value=25 Score=19.44 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHhCCCC
Q 041844 60 KPMTLNQLLGALQIHP 75 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~ 75 (97)
...|..|||+.+|+.+
T Consensus 25 ~g~s~~eIA~~l~is~ 40 (74)
T 1fse_A 25 QDKTTKEIASELFISE 40 (74)
T ss_dssp TTCCHHHHHHHHTSCH
T ss_pred cCCCHHHHHHHHCCCH
Confidence 3569999999999954
No 450
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=38.67 E-value=19 Score=19.65 Aligned_cols=23 Identities=9% Similarity=-0.003 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHhC--CCCCCcccHHHHH
Q 041844 60 KPMTLNQLLGALQ--IHPTKTRCLHFLV 85 (97)
Q Consensus 60 gp~s~~ELA~~~g--~~~~~~~~L~RlL 85 (97)
..+|..|+|..+| +++ ..+.++.
T Consensus 20 ~glsq~~lA~~~g~~is~---~~i~~~e 44 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKA---VVVGSYE 44 (71)
T ss_dssp TTCCHHHHHHHTTTSSCH---HHHHHHH
T ss_pred cCCCHHHHHHHHCCcCCH---HHHHHHH
Confidence 4678888888888 632 4444443
No 451
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=38.52 E-value=6.5 Score=28.05 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=3.1
Q ss_pred CCCC-CHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPM-TLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~-s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|..+ |-.|||+..|++. ..+++-++.|...|++.
T Consensus 37 g~~lPse~~La~~~~vSr---~tvr~Al~~L~~~G~i~ 71 (247)
T 2ra5_A 37 GSLLGNEIELAARLGLSR---PTVRQAIQSLVDKGLLV 71 (247)
T ss_dssp ----------------------------------CEEE
T ss_pred CCCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCCEE
Confidence 3566 8999999999954 78999999999999875
No 452
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=38.36 E-value=27 Score=23.45 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=30.0
Q ss_pred hHHHhhCCCCCCHHHHHHHhC-----CCCCCcccHHHHHHHHHhcCccc
Q 041844 52 PDIIHNHTKPMTLNQLLGALQ-----IHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 52 ~D~La~~~gp~s~~ELA~~~g-----~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
-.+|.. +|++--||...+. ... ++..|+++|+-|...|+++
T Consensus 50 L~lL~~--~p~~GYeI~k~l~~~~~~~~i-s~gtLYp~L~rLE~~GlI~ 95 (148)
T 2zfw_A 50 LAVLRH--EDSYGTELIQHLETHWPNYRL-SDTVLYTALKFLEDEQIIS 95 (148)
T ss_dssp HHHHTT--CCEEHHHHHHHHHHHCTTEEC-CSHHHHHHHHHHHHTSSEE
T ss_pred HHHHHh--CCCcHHHHHHHHHHHcCCCCC-ChhHHHHHHHHHHHCCCEE
Confidence 344543 7888888887763 112 4489999999999999885
No 453
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=38.35 E-value=15 Score=30.64 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
...+|.+||++.+|+++ ..|.|.|..|+..|++.
T Consensus 601 ~~~~t~~ei~~~t~i~~---~~l~r~L~~l~k~~iL~ 634 (760)
T 1ldj_A 601 EDAYTVQQLTDSTQIKM---DILAQVLQILLKSKLLV 634 (760)
T ss_dssp SSEEEHHHHHHHTCCCH---HHHHHHHHHHHHTTTEE
T ss_pred CCCcCHHHHHHHHCcCH---HHHHHHHHHHHHCCcce
Confidence 36899999999999944 88999999999999876
No 454
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=37.49 E-value=19 Score=25.67 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVC 86 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR 86 (97)
+..|+.|||+..|++. ..+.|+|+
T Consensus 9 ~~~ti~diA~~agVS~---~TVSr~Ln 32 (344)
T 3kjx_A 9 RPLTLRDVSEASGVSE---MTVSRVLR 32 (344)
T ss_dssp -CCCHHHHHHHHCCCS---HHHHHHHT
T ss_pred CCCCHHHHHHHHCCCH---HHHHHHHc
Confidence 5789999999999954 66776663
No 455
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=37.49 E-value=16 Score=20.78 Aligned_cols=24 Identities=4% Similarity=-0.035 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVC 86 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR 86 (97)
.-++..|+|+.+|+.. ..++|+++
T Consensus 9 ~~l~~~eva~~lgvsr---stiy~~~~ 32 (66)
T 1z4h_A 9 SLVDLKFIMADTGFGK---TFIYDRIK 32 (66)
T ss_dssp SEECHHHHHHHHSSCH---HHHHHHHH
T ss_pred cccCHHHHHHHHCcCH---HHHHHHHH
Confidence 4579999999999944 78888876
No 456
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=37.15 E-value=16 Score=20.68 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHhCCC
Q 041844 60 KPMTLNQLLGALQIH 74 (97)
Q Consensus 60 gp~s~~ELA~~~g~~ 74 (97)
..+|..|||..+|++
T Consensus 22 ~glsq~~lA~~~gis 36 (84)
T 2ef8_A 22 ASLSQSELAIFLGLS 36 (84)
T ss_dssp TTCCHHHHHHHHTCC
T ss_pred cCCCHHHHHHHhCCC
Confidence 468888999988874
No 457
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=37.09 E-value=15 Score=20.90 Aligned_cols=15 Identities=0% Similarity=0.111 Sum_probs=10.8
Q ss_pred CCCCHHHHHHHhCCC
Q 041844 60 KPMTLNQLLGALQIH 74 (97)
Q Consensus 60 gp~s~~ELA~~~g~~ 74 (97)
..+|-.|||+.+|++
T Consensus 24 ~gltq~~lA~~~gvs 38 (80)
T 3kz3_A 24 LGLSYESVADKMGMG 38 (80)
T ss_dssp HTCCHHHHHHHTTSC
T ss_pred cCCCHHHHHHHhCcC
Confidence 356778888888863
No 458
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=36.67 E-value=17 Score=25.64 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=32.3
Q ss_pred hhHHHhhCCCCCCHHHHHHHhCC-----CCCCcccHHHHHHHHHhcCccc
Q 041844 51 IPDIIHNHTKPMTLNQLLGALQI-----HPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 51 I~D~La~~~gp~s~~ELA~~~g~-----~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|--.|. .+|++--||++.+.- -+..+..|++.|+-|...|+++
T Consensus 41 IL~lL~--~~p~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~ 88 (204)
T 3l9f_A 41 ILGILS--KKERSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKIT 88 (204)
T ss_dssp HHHHTS--SCCEEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTSEE
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCCeE
Confidence 344564 389999999998731 0114589999999999999886
No 459
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=36.30 E-value=29 Score=26.11 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 58 HTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 58 ~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
-+|..|+.||.+.++. ++..+..++..|...|++.
T Consensus 48 ldG~~tl~ei~~~l~~---~~~~v~~~i~~L~~~g~l~ 82 (353)
T 3h5n_A 48 FITPSSYTAALETANI---PEKDFSNCFRFLKENFFII 82 (353)
T ss_dssp TSSCBCHHHHHTTCCS---CHHHHHHHHHHHHHTTSEE
T ss_pred hcCCCCHHHHHHHcCC---CHHHHHHHHHHHHHCCCEe
Confidence 3489999999999987 3488999999999999775
No 460
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=36.23 E-value=29 Score=22.98 Aligned_cols=28 Identities=0% Similarity=-0.013 Sum_probs=23.3
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
..|+.|+|+.+|+++ +.+|+....|++.
T Consensus 4 ~~tI~evA~~~Gvs~-------~tLR~ye~~GLl~ 31 (146)
T 3hh0_A 4 AWLISEFASVGDVTV-------RALRYYDKINLLK 31 (146)
T ss_dssp CBCHHHHHHHHTCCH-------HHHHHHHHTTSSC
T ss_pred CCcHHHHHHHHCcCH-------HHHHHHHHCCCCC
Confidence 578999999999954 4788888889875
No 461
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=35.89 E-value=50 Score=18.37 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=17.7
Q ss_pred CHHHHHHHhCCCCCCcccHHHHHHH
Q 041844 63 TLNQLLGALQIHPTKTRCLHFLVCS 87 (97)
Q Consensus 63 s~~ELA~~~g~~~~~~~~L~RlLR~ 87 (97)
+..+.|+.+|++. ..|+|-|+-
T Consensus 35 n~~~aA~~LGIsr---~tL~rklkk 56 (61)
T 1g2h_A 35 STRKLAQRLGVSH---TAIANKLKQ 56 (61)
T ss_dssp SHHHHHHHTTSCT---HHHHHHHHT
T ss_pred CHHHHHHHhCCCH---HHHHHHHHH
Confidence 5778899999965 788888873
No 462
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=35.72 E-value=18 Score=24.05 Aligned_cols=22 Identities=18% Similarity=-0.068 Sum_probs=16.1
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHH
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLV 85 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlL 85 (97)
.-|++|||+++|+++ +.|..-+
T Consensus 95 adTleeLA~~~gid~---~~L~~TV 116 (160)
T 2lfc_A 95 KGSLESAAEQAGIVV---DELVQTV 116 (160)
T ss_dssp CSSHHHHHHHHTCCH---HHHHHHH
T ss_pred cCCHHHHHHHhCCCH---HHHHHHH
Confidence 459999999999954 5554433
No 463
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=35.53 E-value=28 Score=23.18 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=31.0
Q ss_pred cChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCc
Q 041844 49 VGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGF 93 (97)
Q Consensus 49 LgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gi 93 (97)
|=|+-.|.. +.| |+..|.+.+|.+. ..+.+.+..|...||
T Consensus 23 Lyla~lId~-~~~-nvp~L~~~TGmPR---RTiQd~I~aL~elgI 62 (117)
T 3ke2_A 23 LYLAHLMDD-ARH-NLLSLGKLTGMPR---RTLQDAIASFADIGI 62 (117)
T ss_dssp HHHHHHHHH-SCC-CHHHHHHHHCCCH---HHHHHHHHTGGGGTC
T ss_pred HHHHHHHhc-CCC-CHHHHHHHHCCCH---hHHHHHHHHhhhCCe
Confidence 334455555 455 9999999999954 889999999998886
No 464
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=34.94 E-value=21 Score=27.37 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=32.2
Q ss_pred hhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCcccc
Q 041844 51 IPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFNL 96 (97)
Q Consensus 51 I~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~e 96 (97)
+.+.|-.+ +..|+.++++.+++.. ....|.++.|+..|++++
T Consensus 302 ll~~l~~~-p~~t~~~~~~~~~~S~---~TA~r~L~~L~e~GiL~~ 343 (373)
T 3eqx_A 302 LVQVIFEQ-PYCRIQNLVESGLAKR---QTASVYLKQLCDIGVLEE 343 (373)
T ss_dssp HHHHHHHC-SEEEHHHHHHTSSSCH---HHHHHHHHHHHHTTSCEE
T ss_pred HHHHHHHC-CCccHHHHHHHhCcCH---HHHHHHHHHHHHCCcEEE
Confidence 33444332 3478999999999944 789999999999999875
No 465
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=34.93 E-value=30 Score=19.54 Aligned_cols=16 Identities=6% Similarity=-0.145 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHhCCCC
Q 041844 60 KPMTLNQLLGALQIHP 75 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~ 75 (97)
..+|-.|+|+.+|+++
T Consensus 23 ~gltq~elA~~~gvs~ 38 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGV 38 (73)
T ss_dssp TTCCHHHHHHHHCSCT
T ss_pred cCCCHHHHHHHhCcCH
Confidence 4688889999988743
No 466
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=34.88 E-value=18 Score=21.39 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=16.0
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLV 85 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlL 85 (97)
..+|..|||+.+|+++ ..+.|+.
T Consensus 21 ~glsq~~lA~~~gis~---~~is~~e 43 (94)
T 2kpj_A 21 SEKTQLEIAKSIGVSP---QTFNTWC 43 (94)
T ss_dssp SSSCHHHHHHHHTCCH---HHHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHH
Confidence 5689999999999742 4444443
No 467
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=33.93 E-value=26 Score=20.72 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHhCCCC
Q 041844 60 KPMTLNQLLGALQIHP 75 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~ 75 (97)
..+|..|||+.+|+.+
T Consensus 52 ~g~s~~eIA~~lgis~ 67 (92)
T 3hug_A 52 RGWSTAQIATDLGIAE 67 (92)
T ss_dssp SCCCHHHHHHHHTSCH
T ss_pred cCCCHHHHHHHHCcCH
Confidence 5789999999999954
No 468
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=33.42 E-value=17 Score=29.03 Aligned_cols=45 Identities=9% Similarity=0.100 Sum_probs=37.2
Q ss_pred hcChhHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 48 QVGIPDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 48 eLgI~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.+.+.|.-.+|..|+-|||+++|++ ...+.-..+.|...|+++
T Consensus 389 ~~~~l~~L~~~dG~~slldia~~~~~~---~~~~~~~~~~l~~~~l~~ 433 (435)
T 3k9t_A 389 EFAMFWVLNMSDGKNSLLDIAYKSGME---FRRIKYAADALYRVELLK 433 (435)
T ss_dssp HHHHHHHHHHCEEEEEHHHHHHHHTCC---HHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhccCCccHHHHHHHhCcC---HHHHHHHHHHHHHccCcc
Confidence 445677777777999999999999994 478888899999998875
No 469
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcr regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=33.25 E-value=9.5 Score=25.92 Aligned_cols=15 Identities=13% Similarity=0.270 Sum_probs=11.8
Q ss_pred CCCCHHHHHHHhCCC
Q 041844 60 KPMTLNQLLGALQIH 74 (97)
Q Consensus 60 gp~s~~ELA~~~g~~ 74 (97)
...|+.+||+++|+.
T Consensus 23 ~~~s~~~IA~~agvs 37 (207)
T 2vpr_A 23 EGLTTRKLAQKIGVE 37 (207)
T ss_dssp HHCCHHHHHHHHTCC
T ss_pred ccCCHHHHHHHhCCC
Confidence 457888888888873
No 470
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=33.23 E-value=18 Score=25.81 Aligned_cols=35 Identities=11% Similarity=0.022 Sum_probs=24.2
Q ss_pred hHHHhhCC-CCCCHHHHHHHhCCCCCCcccHHHHHHHHH
Q 041844 52 PDIIHNHT-KPMTLNQLLGALQIHPTKTRCLHFLVCSLV 89 (97)
Q Consensus 52 ~D~La~~~-gp~s~~ELA~~~g~~~~~~~~L~RlLR~La 89 (97)
...|.+.| ..+|..|||+.+|++| ..++|=+-++-
T Consensus 22 l~~l~~~g~~~isS~ela~~~gv~~---~qiRkDls~fg 57 (212)
T 3keo_A 22 FKRFNTDGIEKASSKQIADALGIDS---ATVRRDFSYFG 57 (212)
T ss_dssp HHHHHHTTCCEECHHHHHHHHTSCH---HHHHHHHHTTG
T ss_pred HHHHHHCCCeEECHHHHHHHHCCCH---HHHHHHHHHHh
Confidence 34455555 6689999999999955 66766554443
No 471
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=33.08 E-value=24 Score=20.08 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=15.3
Q ss_pred CHHHHHHHhCCCCCCcccHHHHHH
Q 041844 63 TLNQLLGALQIHPTKTRCLHFLVC 86 (97)
Q Consensus 63 s~~ELA~~~g~~~~~~~~L~RlLR 86 (97)
|-.|||..+|+++ ..+.++.+
T Consensus 13 sq~~lA~~lgvs~---~~is~~e~ 33 (79)
T 3bd1_A 13 SVSALAASLGVRQ---SAISNWRA 33 (79)
T ss_dssp SHHHHHHHHTCCH---HHHHHHHH
T ss_pred CHHHHHHHHCCCH---HHHHHHHH
Confidence 8899999999843 55666554
No 472
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=32.22 E-value=20 Score=20.74 Aligned_cols=15 Identities=0% Similarity=0.076 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHhCCC
Q 041844 60 KPMTLNQLLGALQIH 74 (97)
Q Consensus 60 gp~s~~ELA~~~g~~ 74 (97)
..+|-.|||..+|++
T Consensus 29 ~glsq~~lA~~~gis 43 (92)
T 1lmb_3 29 LGLSQESVADKMGMG 43 (92)
T ss_dssp HTCCHHHHHHHHTSC
T ss_pred cCCCHHHHHHHHCcC
Confidence 357888888888874
No 473
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=32.07 E-value=54 Score=24.81 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 59 TKPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
++.+|+.||+..+|+.+ .-|+..|..+|++.
T Consensus 212 ~~~isi~~is~~T~i~~------~DIi~tL~~l~~l~ 242 (284)
T 2ozu_A 212 DKQISIKKLSKLTGICP------QDITSTLHHLRMLD 242 (284)
T ss_dssp ----CHHHHHHHHCBCH------HHHHHHHHHTTCC-
T ss_pred CCcEeHHHHHHHhCCCH------HHHHHHHHHCCCEE
Confidence 46899999999999954 33677777777664
No 474
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=31.95 E-value=30 Score=21.43 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCS 87 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~ 87 (97)
+..+..++|...|+++ ..|+|+++.
T Consensus 24 g~~~~~~~A~~~gvs~---stl~~~~~~ 48 (131)
T 1hlv_A 24 PDLRKGEIARRFNIPP---STLSTILKN 48 (131)
T ss_dssp TTSCHHHHHHHHTCCH---HHHHHHHHT
T ss_pred CCCcHHHHHHHhCCCH---HHHHHHHhc
Confidence 4556668999999854 788888774
No 475
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=31.82 E-value=40 Score=20.68 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHh-----CCCCCCcccHHHHHHHHHhcC
Q 041844 60 KPMTLNQLLGAL-----QIHPTKTRCLHFLVCSLVRSG 92 (97)
Q Consensus 60 gp~s~~ELA~~~-----g~~~~~~~~L~RlLR~Laa~g 92 (97)
..+|+-||.+-- ..|.-|+..|.|.|+.|+..|
T Consensus 26 sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~g 63 (79)
T 3htu_A 26 SVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEH 63 (79)
T ss_dssp SEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTT
T ss_pred ceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcC
Confidence 568999998832 123336799999999999887
No 476
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=31.62 E-value=26 Score=25.99 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVR 90 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa 90 (97)
.++|+++||+.+|+++ ..|.|+++.-..
T Consensus 320 ~~~~~~~~a~~~~~s~---~~l~r~f~~~~g 347 (412)
T 4fe7_A 320 KGIKVDQVLDAVGISR---SNLEKRFKEEVG 347 (412)
T ss_dssp GTCCHHHHHHHTTCCH---HHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHCcCH---HHHHHHHHHHHC
Confidence 6899999999999955 889999886543
No 477
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=31.46 E-value=21 Score=25.32 Aligned_cols=35 Identities=9% Similarity=0.132 Sum_probs=24.5
Q ss_pred hhHHHhhCC-CCCCHHHHHHHhCCCCCCcccHHHHHHHH
Q 041844 51 IPDIIHNHT-KPMTLNQLLGALQIHPTKTRCLHFLVCSL 88 (97)
Q Consensus 51 I~D~La~~~-gp~s~~ELA~~~g~~~~~~~~L~RlLR~L 88 (97)
....|.+.| .-+|..|||+++|++| ..++|=+-++
T Consensus 22 ~l~~l~~~g~~~iss~~l~~~~~~~~---~~iRkdls~f 57 (215)
T 2vt3_A 22 FLKNLHASGKQRVSSAELSDAVKVDS---ATIRRDFSYF 57 (215)
T ss_dssp HHHHHHHTTCCEECHHHHHHHHCCCH---HHHHHHHHHT
T ss_pred HHHHHHHcCCcEECHHHHHHHhCCCH---HHeechHHHH
Confidence 334455555 5689999999999955 7777655554
No 478
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=31.45 E-value=20 Score=22.23 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVC 86 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR 86 (97)
..+|..|||..+|+++ ..+.++.+
T Consensus 26 ~gltq~eLA~~lGis~---~~is~ie~ 49 (104)
T 3trb_A 26 DKMSANQLAKHLAIPT---NRVTAILN 49 (104)
T ss_dssp TSCCHHHHHHHHTSCH---HHHHHHHT
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHHc
Confidence 5689999999999843 55555543
No 479
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=31.32 E-value=12 Score=25.45 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHhCCC
Q 041844 60 KPMTLNQLLGALQIH 74 (97)
Q Consensus 60 gp~s~~ELA~~~g~~ 74 (97)
...|+.+||+++|+.
T Consensus 22 ~~~s~~~IA~~aGvs 36 (202)
T 4ac0_A 22 EGLTTRKLAQKLGVE 36 (202)
T ss_dssp HHCCHHHHHHHHTSC
T ss_pred ccCCHHHHHHHhCCC
Confidence 467888888888873
No 480
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=31.25 E-value=29 Score=18.04 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=17.9
Q ss_pred CCHHHHHHHhCCCCCCcccHHHHHHHHHhcCc
Q 041844 62 MTLNQLLGALQIHPTKTRCLHFLVCSLVRSGF 93 (97)
Q Consensus 62 ~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gi 93 (97)
+++.|||..+|+. ..+++-.|...|+
T Consensus 3 ~rv~~lAkel~~~------~k~l~~~l~~~g~ 28 (49)
T 1nd9_A 3 VTIKTLAAERQTS------VERLVQQFADAGI 28 (49)
T ss_dssp ECTTHHHHHHSSS------HHHHHHHHHHHTS
T ss_pred ccHHHHHHHHCcC------HHHHHHHHHHcCC
Confidence 4567888888873 3466666777776
No 481
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=31.24 E-value=20 Score=25.25 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=25.1
Q ss_pred ChhHHHhhCC-CCCCHHHHHHHhCCCCCCcccHHHHHHHH
Q 041844 50 GIPDIIHNHT-KPMTLNQLLGALQIHPTKTRCLHFLVCSL 88 (97)
Q Consensus 50 gI~D~La~~~-gp~s~~ELA~~~g~~~~~~~~L~RlLR~L 88 (97)
.....|.+.| .-+|..|||+.+|++| ..+++=+-++
T Consensus 16 r~l~~l~~~g~~~iss~~l~~~~~~~~---~~iRkdls~~ 52 (211)
T 2dt5_A 16 RILEELEAQGVHRTSSEQLGGLAQVTA---FQVRKDLSYF 52 (211)
T ss_dssp HHHHHHHHTTCCEECHHHHHHHHTSCH---HHHHHHHHHT
T ss_pred HHHHHHHHcCCcEECHHHHHHHhCCCH---HHeechHHHH
Confidence 3345555555 5689999999999955 7777655554
No 482
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=31.06 E-value=37 Score=22.36 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=23.4
Q ss_pred CCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 61 PMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 61 p~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
..|+.|+|+.+|+++ +-+|+-...|++.
T Consensus 16 ~~~I~evA~~~gvs~-------~tLR~Ye~~Gll~ 43 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTI-------SQIRYYDKQGLFP 43 (148)
T ss_dssp CBCHHHHHHHTTCCH-------HHHHHHHHTTCCT
T ss_pred ceeHHHHHHHHCcCH-------HHHHHHHHCCCCC
Confidence 578999999999954 5788888899884
No 483
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=31.04 E-value=63 Score=18.78 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHhCCCC--CCcccHHHHHHHHHhcCc
Q 041844 60 KPMTLNQLLGALQIHP--TKTRCLHFLVCSLVRSGF 93 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~--~~~~~L~RlLR~Laa~gi 93 (97)
|-+|.+||...++-+. -+++.+..++..|..+||
T Consensus 22 G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI 57 (72)
T 2k6x_A 22 GYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGI 57 (72)
T ss_dssp SSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCC
T ss_pred CCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCC
Confidence 6899999999887533 477899999999999985
No 484
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=31.02 E-value=52 Score=19.70 Aligned_cols=32 Identities=9% Similarity=-0.012 Sum_probs=22.3
Q ss_pred hHHHhhCCCCCCHHHHHHHhCCCCCCcccHHHHHHHH
Q 041844 52 PDIIHNHTKPMTLNQLLGALQIHPTKTRCLHFLVCSL 88 (97)
Q Consensus 52 ~D~La~~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~L 88 (97)
-+.|...+|- ..+.|+.+|++. ..|+|-|+-+
T Consensus 57 ~~aL~~~~gn--~~~aA~~LGIsr---~tL~rklkk~ 88 (91)
T 1ntc_A 57 TTALRHTQGH--KQEAARLLGWGA---ATLTAKLKEL 88 (91)
T ss_dssp HHHHHHTTTC--TTHHHHHTTCCH---HHHHHHHHHH
T ss_pred HHHHHHhCCC--HHHHHHHHCcCH---HHHHHHHHHh
Confidence 3456665554 447899999954 7898888754
No 485
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=31.01 E-value=42 Score=20.27 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLV 85 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlL 85 (97)
..+|-.|||+.+|+++ ..+.|+.
T Consensus 40 ~gltq~elA~~~gis~---~~is~iE 62 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDR---TYISGIE 62 (99)
T ss_dssp TTCCHHHHHHHHTCCH---HHHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHH
Confidence 5678888888888742 4444443
No 486
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=30.99 E-value=11 Score=25.96 Aligned_cols=25 Identities=8% Similarity=-0.011 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHhCCCCCCcccHHHHHH
Q 041844 59 TKPMTLNQLLGALQIHPTKTRCLHFLVC 86 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~~~~~~~~L~RlLR 86 (97)
..-+|+.|.|+.+|++. ..+++++|
T Consensus 29 ~~~LTv~EVAe~LgVs~---srV~~LIr 53 (148)
T 2kfs_A 29 EPTYDLPRVAELLGVPV---SKVAQQLR 53 (148)
T ss_dssp SCEEEHHHHHHHHTCCH---HHHHHHHH
T ss_pred CceEcHHHHHHHhCCCH---HHHHHHHH
Confidence 36789999999999943 77888776
No 487
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=30.95 E-value=42 Score=24.38 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHhCCCCCCcccHHHHHH-HHHhcCccc
Q 041844 59 TKPMTLNQLLGALQIHPTKTRCLHFLVC-SLVRSGFFN 95 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~~~~~~~~L~RlLR-~Laa~gif~ 95 (97)
++|.++.+||+.+|.+ +..+.++.. +|...|+++
T Consensus 274 ~~~~~~~~l~~~~~~~---~~t~~~~~~~~l~~~g~i~ 308 (334)
T 1in4_A 274 GGPVGLNALAASLGVE---ADTLSEVYEPYLLQAGFLA 308 (334)
T ss_dssp TCCBCHHHHHHHHTSC---HHHHHHHTHHHHHHTTSEE
T ss_pred CCcchHHHHHHHhCCC---cchHHHHHHHHHHHcCCee
Confidence 6899999999999984 467777766 888888775
No 488
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=30.79 E-value=31 Score=21.43 Aligned_cols=16 Identities=6% Similarity=0.108 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHhCCCC
Q 041844 60 KPMTLNQLLGALQIHP 75 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~ 75 (97)
..+|..|||+.+|+++
T Consensus 123 ~g~s~~EIA~~lgis~ 138 (164)
T 3mzy_A 123 RGYSYREIATILSKNL 138 (164)
T ss_dssp TTCCHHHHHHHHTCCH
T ss_pred cCCCHHHHHHHHCCCH
Confidence 6889999999999954
No 489
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=30.74 E-value=43 Score=22.31 Aligned_cols=29 Identities=7% Similarity=0.008 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhcCccc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
..+|+.|+|+.+|+++ +-+|+....|++.
T Consensus 10 ~~~~i~e~A~~~gvs~-------~TLR~ye~~Gll~ 38 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAV-------SALHFYESKGLIT 38 (154)
T ss_dssp CCBCHHHHHHHHTSCH-------HHHHHHHHTTSSC
T ss_pred cCCCHHHHHHHHCcCH-------HHHHHHHHcCCCC
Confidence 4689999999999954 4778888888774
No 490
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=30.57 E-value=22 Score=21.31 Aligned_cols=23 Identities=4% Similarity=0.140 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHH
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLV 85 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlL 85 (97)
..+|..|||..+|+++ ..+.|+.
T Consensus 30 ~gltq~~lA~~~gis~---~~is~~e 52 (104)
T 3cec_A 30 LDINTANFAEILGVSN---QTIQEVI 52 (104)
T ss_dssp HTCCHHHHHHHHTSCH---HHHHHHH
T ss_pred cCCCHHHHHHHHCcCH---HHHHHHH
Confidence 4578888888888742 4444443
No 491
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=30.51 E-value=36 Score=23.94 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHhCCCCCCcccHHHHH-HHHHhcCccc
Q 041844 59 TKPMTLNQLLGALQIHPTKTRCLHFLV-CSLVRSGFFN 95 (97)
Q Consensus 59 ~gp~s~~ELA~~~g~~~~~~~~L~RlL-R~Laa~gif~ 95 (97)
+.+.+.+++|+.+|+++ ..|+|.| +++...|++.
T Consensus 262 g~~~~~~~~a~~lgi~~---~tl~~~l~~~~i~~~li~ 296 (324)
T 1hqc_A 262 GGPVGLATLATALSEDP---GTLEEVHEPYLIRQGLLK 296 (324)
T ss_dssp SSCCCHHHHHHHTTSCH---HHHHHHTHHHHHHTTSEE
T ss_pred CCCchHHHHHHHhCCCH---HHHHHHHhHHHHHhcchh
Confidence 46889999999999954 7788844 4588888764
No 492
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=30.45 E-value=29 Score=22.23 Aligned_cols=14 Identities=7% Similarity=0.150 Sum_probs=11.9
Q ss_pred CCCHHHHHHHhCCC
Q 041844 61 PMTLNQLLGALQIH 74 (97)
Q Consensus 61 p~s~~ELA~~~g~~ 74 (97)
..|+.+||++.|+.
T Consensus 35 ~~s~~~Ia~~agvs 48 (199)
T 2rek_A 35 DASLEEIARRAGVG 48 (199)
T ss_dssp GCCHHHHHHHHTCC
T ss_pred CCCHHHHHHHhCCc
Confidence 46899999999984
No 493
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=30.40 E-value=47 Score=19.16 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHhCCC
Q 041844 60 KPMTLNQLLGALQIH 74 (97)
Q Consensus 60 gp~s~~ELA~~~g~~ 74 (97)
..+|..|||..+|++
T Consensus 25 ~glsq~~lA~~~gis 39 (91)
T 1x57_A 25 KGLTQKDLATKINEK 39 (91)
T ss_dssp TTCCHHHHHHHHTSC
T ss_pred cCCCHHHHHHHHCcC
Confidence 457777777777763
No 494
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=30.35 E-value=12 Score=21.35 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=17.0
Q ss_pred CCHHHHHHHhCCCCCCcccHHHHHH
Q 041844 62 MTLNQLLGALQIHPTKTRCLHFLVC 86 (97)
Q Consensus 62 ~s~~ELA~~~g~~~~~~~~L~RlLR 86 (97)
+|..|+|+.+|+++ ..|+|..+
T Consensus 3 lt~~e~a~~LgvS~---~Tl~rw~~ 24 (68)
T 1j9i_A 3 VNKKQLADIFGASI---RTIQNWQE 24 (68)
T ss_dssp EEHHHHHHHTTCCH---HHHHHHTT
T ss_pred cCHHHHHHHHCcCH---HHHHHHHH
Confidence 57889999999954 77777654
No 495
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=30.32 E-value=31 Score=22.73 Aligned_cols=42 Identities=10% Similarity=0.081 Sum_probs=30.2
Q ss_pred hhHHHhhCCCCCCHHHHHHHhC-----CCCCCcccHHHHHHHHHhcCccc
Q 041844 51 IPDIIHNHTKPMTLNQLLGALQ-----IHPTKTRCLHFLVCSLVRSGFFN 95 (97)
Q Consensus 51 I~D~La~~~gp~s~~ELA~~~g-----~~~~~~~~L~RlLR~Laa~gif~ 95 (97)
|-.+|.. +|++--||.+.+. ... ++..|+++|+-|...|+++
T Consensus 39 IL~lL~~--~~~~Gyei~k~l~~~~~~~~i-s~gtLYp~L~rLe~~GlI~ 85 (138)
T 2e1n_A 39 VLAVLRH--EDSYGTELIQHLETHWPNYRL-SDTVLYTALKFLEDEQIIS 85 (138)
T ss_dssp HHHHHTT--SCEEHHHHHHHHHHHSTTEEC-CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHcCCCCC-CccHHHHHHHHHHHCCCEE
Confidence 3444543 7888888777663 112 5589999999999999875
No 496
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=30.24 E-value=23 Score=27.03 Aligned_cols=29 Identities=21% Similarity=0.151 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 041844 60 KPMTLNQLLGALQIHPTKTRCLHFLVCSLVRS 91 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~~~~~~L~RlLR~Laa~ 91 (97)
..+|.+||++.+|+++ ..|.|.|..|+..
T Consensus 214 ~~lt~~ei~~~t~i~~---~~L~r~L~sL~~~ 242 (382)
T 3dpl_C 214 EKISFENLKLATELPD---AELRRTLWSLVAF 242 (382)
T ss_dssp CCEEHHHHHHHHCCCH---HHHHHHHHHHHCC
T ss_pred CcCcHHHHHHHHCcCH---HHHHHHHHHHhcc
Confidence 5899999999999944 8899999999863
No 497
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=30.20 E-value=47 Score=24.01 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHhCCCCCCcccHHHHHHHHH
Q 041844 58 HTKPMTLNQLLGALQIHPTKTRCLHFLVCSLV 89 (97)
Q Consensus 58 ~~gp~s~~ELA~~~g~~~~~~~~L~RlLR~La 89 (97)
.+.|+|+.+||+.++.++ ..+..+|..|.
T Consensus 27 a~epvs~~~La~~l~~~~---~~v~~~l~~L~ 55 (219)
T 2z99_A 27 IDTPVTADALAAATEQPV---YRVAAKLQLMA 55 (219)
T ss_dssp CSSCBCHHHHHHHHTSCH---HHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCH---HHHHHHHHHHH
Confidence 468999999999999843 56777776664
No 498
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=29.83 E-value=42 Score=18.76 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHhCCCC
Q 041844 60 KPMTLNQLLGALQIHP 75 (97)
Q Consensus 60 gp~s~~ELA~~~g~~~ 75 (97)
..+|..|||+.+|+.+
T Consensus 30 ~g~s~~eIA~~l~is~ 45 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISP 45 (79)
T ss_dssp TTCCHHHHHHHTTSCH
T ss_pred cCCCHHHHHHHHCcCH
Confidence 5689999999999954
No 499
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=29.17 E-value=36 Score=24.72 Aligned_cols=26 Identities=4% Similarity=0.038 Sum_probs=20.1
Q ss_pred CCC-CHHHHHHHhCCCCCCcccHHHHHHHH
Q 041844 60 KPM-TLNQLLGALQIHPTKTRCLHFLVCSL 88 (97)
Q Consensus 60 gp~-s~~ELA~~~g~~~~~~~~L~RlLR~L 88 (97)
... |..|+|+.+|+++ +.++|+=|.|
T Consensus 76 ~~yvT~~eVAe~aGv~~---e~~rr~wRal 102 (222)
T 2ev1_A 76 GTYVSAREISENYGVDL---ELLQRVQRAV 102 (222)
T ss_dssp SCEECHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred cCcCCHHHHHHHHCcCH---HHHHHHHHHh
Confidence 334 9999999999954 7777777743
No 500
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=29.03 E-value=26 Score=22.54 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=9.6
Q ss_pred CCCCHHHHHHHhC
Q 041844 60 KPMTLNQLLGALQ 72 (97)
Q Consensus 60 gp~s~~ELA~~~g 72 (97)
+++|..|||+.+|
T Consensus 23 ~~lT~~elA~~~~ 35 (123)
T 3qwg_A 23 GPHTSAEVIAALK 35 (123)
T ss_dssp CSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHc
Confidence 4677777777776
Done!