Your job contains 1 sequence.
>041849
MDLLSVSSTSTSHLHFSLYKPPNFSLSKSLPLSFKPISSVKTRRISTKTLALQQQQRQHD
VPLSSAPQTPATAMRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKD
IRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTR
VMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIE
AVEYGIIDGVIDRDSIIPLVPVPEKVKPGFDYLEVRKDPRKFLTPDVPDDEIV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041849
(293 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2163538 - symbol:CLPP4 "CLP protease P4" speci... 936 4.8e-94 1
TAIR|locus:2033344 - symbol:CLPP3 "CLP protease proteolyt... 513 3.2e-49 1
UNIPROTKB|P63786 - symbol:clpP "ATP-dependent Clp proteas... 501 6.0e-48 1
UNIPROTKB|P0A6G7 - symbol:clpP species:83333 "Escherichia... 484 3.8e-46 1
TIGR_CMR|DET_0710 - symbol:DET_0710 "ATP-dependent Clp pr... 480 1.0e-45 1
TIGR_CMR|BA_5380 - symbol:BA_5380 "ATP-dependent Clp prot... 476 2.7e-45 1
TIGR_CMR|CHY_0325 - symbol:CHY_0325 "ATP-dependent Clp pr... 475 3.4e-45 1
TAIR|locus:2196120 - symbol:CLPP5 "nuclear encoded CLP pr... 475 3.4e-45 1
TIGR_CMR|GSU_1792 - symbol:GSU_1792 "ATP-dependent Clp pr... 470 1.2e-44 1
TIGR_CMR|SO_1794 - symbol:SO_1794 "ATP-dependent Clp prot... 470 1.2e-44 1
TIGR_CMR|CPS_3785 - symbol:CPS_3785 "ATP-dependent Clp pr... 468 1.9e-44 1
TIGR_CMR|VC_1922 - symbol:VC_1922 "ATP-dependent Clp prot... 463 6.4e-44 1
UNIPROTKB|P0A526 - symbol:clpP1 "ATP-dependent Clp protea... 445 5.2e-42 1
TIGR_CMR|CBU_0738 - symbol:CBU_0738 "ATP-dependent Clp pr... 443 8.4e-42 1
TIGR_CMR|CJE_0185 - symbol:CJE_0185 "ATP-dependent Clp pr... 437 3.6e-41 1
TIGR_CMR|NSE_0752 - symbol:NSE_0752 "ATP-dependent Clp pr... 435 5.9e-41 1
TIGR_CMR|BA_2788 - symbol:BA_2788 "ATP-dependent Clp prot... 430 2.0e-40 1
TIGR_CMR|APH_0970 - symbol:APH_0970 "ATP-dependent Clp pr... 427 4.2e-40 1
WB|WBGene00014172 - symbol:clpp-1 species:6239 "Caenorhab... 415 7.8e-39 1
ZFIN|ZDB-GENE-030131-7860 - symbol:clpp "ClpP caseinolyti... 414 9.9e-39 1
UNIPROTKB|P63783 - symbol:clpP2 "ATP-dependent Clp protea... 413 1.3e-38 1
TIGR_CMR|ECH_0901 - symbol:ECH_0901 "ATP-dependent Clp pr... 412 1.6e-38 1
TIGR_CMR|SPO_1003 - symbol:SPO_1003 "ATP-dependent Clp pr... 410 2.6e-38 1
TAIR|locus:2178282 - symbol:NCLPP7 "nuclear-encoded CLP p... 408 4.3e-38 1
GENEDB_PFALCIPARUM|PFC0310c - symbol:PFC0310c "ATP-depend... 405 8.9e-38 1
UNIPROTKB|O97252 - symbol:PFC0310c "ATP-dependent CLP pro... 405 8.9e-38 1
UNIPROTKB|Q16740 - symbol:CLPP "Putative ATP-dependent Cl... 404 1.1e-37 1
UNIPROTKB|Q2KHU4 - symbol:CLPP "Putative ATP-dependent Cl... 403 1.5e-37 1
UNIPROTKB|F1SBT2 - symbol:CLPP "ATP-dependent Clp proteas... 401 2.4e-37 1
UNIPROTKB|E2QUV8 - symbol:CLPP "ATP-dependent Clp proteas... 399 3.9e-37 1
MGI|MGI:1858213 - symbol:Clpp "ClpP caseinolytic peptidas... 399 3.9e-37 1
RGD|1588583 - symbol:Clpp "ClpP caseinolytic peptidase, A... 398 4.9e-37 1
FB|FBgn0032229 - symbol:CG5045 species:7227 "Drosophila m... 376 1.1e-34 1
UNIPROTKB|G4MLM6 - symbol:MGG_06757 "ATP-dependent Clp pr... 349 7.7e-32 1
TAIR|locus:2034625 - symbol:CLP2 "CLP protease proteolyti... 329 1.0e-29 1
TAIR|locus:2130449 - symbol:CLPR4 "CLP protease R subunit... 326 2.1e-29 1
UNIPROTKB|P0C312 - symbol:clpP "ATP-dependent Clp proteas... 305 3.5e-27 1
UNIPROTKB|P0C313 - symbol:clpP "ATP-dependent Clp proteas... 305 3.5e-27 1
UNIPROTKB|P0C314 - symbol:clpP "ATP-dependent Clp proteas... 305 3.5e-27 1
UNIPROTKB|Q6ENE9 - symbol:clpP "ATP-dependent Clp proteas... 305 3.5e-27 1
UNIPROTKB|Q6E6T0 - symbol:Q6E6T0 "ATP-dependent Clp prote... 298 1.9e-26 1
TAIR|locus:2031070 - symbol:CLPR1 "CLP protease proteolyt... 282 9.7e-25 1
GENEDB_PFALCIPARUM|PF14_0348 - symbol:PF14_0348 "ATP-depe... 245 8.0e-21 1
UNIPROTKB|Q8IL98 - symbol:PF14_0348 "ATP-dependent Clp pr... 245 8.0e-21 1
TIGR_CMR|DET_1086 - symbol:DET_1086 "ATP-dependent Clp pr... 159 3.3e-10 1
TIGR_CMR|BA_4092 - symbol:BA_4092 "prophage LambdaBa02, C... 136 4.1e-07 1
TIGR_CMR|SO_2964 - symbol:SO_2964 "ClpP protease family p... 132 1.9e-06 1
>TAIR|locus:2163538 [details] [associations]
symbol:CLPP4 "CLP protease P4" species:3702 "Arabidopsis
thaliana" [GO:0004252 "serine-type endopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid
membrane" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0009840 "chloroplastic endopeptidase Clp complex"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009532 "plastid stroma" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009658 "chloroplast organization" evidence=IMP]
[GO:0048510 "regulation of timing of transition from vegetative to
reproductive phase" evidence=IMP] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010207
"photosystem II assembly" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
[GO:0035304 "regulation of protein dephosphorylation" evidence=RCA]
[GO:0042793 "transcription from plastid promoter" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006508 GO:GO:0009941
GO:GO:0004252 GO:GO:0009658 GO:GO:0048510 GO:GO:0009535
eggNOG:COG0740 HOGENOM:HOG000285833 InterPro:IPR023562
PANTHER:PTHR10381 GO:GO:0009840 EMBL:AB022329 EMBL:AJ000930
EMBL:AB018113 EMBL:AY042832 EMBL:BT006321 EMBL:AY087717
IPI:IPI00548920 PIR:T52452 RefSeq:NP_568644.1 UniGene:At.387
UniGene:At.67124 PDB:1R91 PDBsum:1R91 ProteinModelPortal:Q94B60
SMR:Q94B60 IntAct:Q94B60 STRING:Q94B60 MEROPS:S14.010 PaxDb:Q94B60
PRIDE:Q94B60 EnsemblPlants:AT5G45390.1 GeneID:834575
KEGG:ath:AT5G45390 GeneFarm:801 TAIR:At5g45390 InParanoid:Q94B60
OMA:ERDYWMD PhylomeDB:Q94B60 ProtClustDB:CLSN2689933
Genevestigator:Q94B60 Uniprot:Q94B60
Length = 292
Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 179/225 (79%), Positives = 207/225 (92%)
Query: 68 QTPATAMRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNS 127
QT +A+RGAE+D MGLLL+ERIVFLG++IDDFVADAI+SQLLLLDA+DP KDI+LF+NS
Sbjct: 67 QTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINS 126
Query: 128 PGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPM 187
PGGSLSATMAIYDVVQLVRADVST+ALG++ASTAS+ILG GTKGKRFAMPNTR+MIHQP+
Sbjct: 127 PGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPL 186
Query: 188 GGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGII 247
GGASGQ +DVEIQA+E+MHNK+N T II+G T RSFEQV KDIDRDRYMSPIEAVEYG+I
Sbjct: 187 GGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLI 246
Query: 248 DGVIDRDSIIPLVPVPEKVKPGFDYLEVRKDPRKFLTPDVPDDEI 292
DGVID DSIIPL PVP++VKP +Y E+ KDP KFLTP++PDDEI
Sbjct: 247 DGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIPDDEI 291
>TAIR|locus:2033344 [details] [associations]
symbol:CLPP3 "CLP protease proteolytic subunit 3"
species:3702 "Arabidopsis thaliana" [GO:0004252 "serine-type
endopeptidase activity" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009840 "chloroplastic
endopeptidase Clp complex" evidence=IDA] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0009532 "plastid stroma" evidence=IDA]
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0006508 GO:GO:0009941
GO:GO:0004252 GO:GO:0009534 EMBL:AC013288 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
GO:GO:0009840 EMBL:AF032123 EMBL:AB022328 EMBL:AC079285
EMBL:AF370528 EMBL:AY072526 EMBL:AY087349 IPI:IPI00538968
PIR:T52041 PIR:T52453 RefSeq:NP_564880.1 UniGene:At.21167 PDB:1R90
PDBsum:1R90 ProteinModelPortal:Q9SXJ6 SMR:Q9SXJ6 IntAct:Q9SXJ6
STRING:Q9SXJ6 MEROPS:S14.A03 PaxDb:Q9SXJ6 PRIDE:Q9SXJ6
ProMEX:Q9SXJ6 EnsemblPlants:AT1G66670.1 GeneID:842985
KEGG:ath:AT1G66670 GeneFarm:804 TAIR:At1g66670 InParanoid:Q9SXJ6
OMA:NMLLRQR PhylomeDB:Q9SXJ6 ProtClustDB:CLSN2689048
Genevestigator:Q9SXJ6 Uniprot:Q9SXJ6
Length = 309
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 96/206 (46%), Positives = 141/206 (68%)
Query: 63 LSSAPQTPATAMRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIR 122
+ S Q+P+ E D +LL++RIVFLG+ +DD AD +ISQLLLLDA+D +DI
Sbjct: 68 IDSVAQSPSRLPSFEELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDIT 127
Query: 123 LFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVM 182
LF+NSPGGS++A M IYD ++ +ADVSTV LG++AS + +L G+KGKR+ MPN++VM
Sbjct: 128 LFINSPGGSITAGMGIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVM 187
Query: 183 IHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAV 242
IHQP+G A G+ ++ I+ RE+M++K +I S TG+ +++ D DRD +++P EA
Sbjct: 188 IHQPLGTAGGKATEMSIRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAK 247
Query: 243 EYGIIDGVIDRDSIIPLVPVPEKVKP 268
EYG+ID VID + P+ + P
Sbjct: 248 EYGLIDAVIDDGKPGLIAPIGDGTPP 273
>UNIPROTKB|P63786 [details] [associations]
symbol:clpP "ATP-dependent Clp protease proteolytic
subunit" species:196620 "Staphylococcus aureus subsp. aureus MW2"
[GO:0042802 "identical protein binding" evidence=IPI]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 MEROPS:S14.001
eggNOG:COG0740 HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562
PANTHER:PTHR10381 TIGRFAMs:TIGR00493 OMA:LVHPPQA
ProtClustDB:PRK00277 EMBL:BA000033 RefSeq:NP_645547.1 PDB:3ST9
PDB:3STA PDBsum:3ST9 PDBsum:3STA ProteinModelPortal:P63786
SMR:P63786 STRING:P63786 EnsemblBacteria:EBSTAT00000026409
GeneID:1002841 GenomeReviews:BA000033_GR KEGG:sam:MW0730
PATRIC:19568014 BioCyc:SAUR196620:GJ9Z-751-MONOMER BindingDB:P63786
EvolutionaryTrace:P63786 Uniprot:P63786
Length = 195
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 97/186 (52%), Positives = 130/186 (69%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++QKD DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
Query: 246 IIDGVI 251
+ID V+
Sbjct: 185 LIDEVM 190
>UNIPROTKB|P0A6G7 [details] [associations]
symbol:clpP species:83333 "Escherichia coli K-12"
[GO:0009408 "response to heat" evidence=IEP] [GO:0004252
"serine-type endopeptidase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IDA] [GO:0006515 "misfolded or incompletely
synthesized protein catabolic process" evidence=IDA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008236 "serine-type peptidase activity"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009266
"response to temperature stimulus" evidence=EXP] HAMAP:MF_00444
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005829
GO:GO:0005524 GO:GO:0016020 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0004252
GO:GO:0008236 GO:GO:0009408 EMBL:U82664 GO:GO:0006515
eggNOG:COG0740 HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562
PANTHER:PTHR10381 TIGRFAMs:TIGR00493 OMA:LVHPPQA
ProtClustDB:PRK00277 EMBL:J05534 PIR:B36575 RefSeq:NP_414971.1
RefSeq:YP_488729.1 PDB:1TYF PDB:1YG6 PDB:1YG8 PDB:2FZS PDB:3HLN
PDB:3MT6 PDBsum:1TYF PDBsum:1YG6 PDBsum:1YG8 PDBsum:2FZS
PDBsum:3HLN PDBsum:3MT6 ProteinModelPortal:P0A6G7 SMR:P0A6G7
DIP:DIP-31838N IntAct:P0A6G7 SWISS-2DPAGE:P0A6G7 PaxDb:P0A6G7
PRIDE:P0A6G7 EnsemblBacteria:EBESCT00000004586
EnsemblBacteria:EBESCT00000016552 EnsemblBacteria:EBESCT00000232597
GeneID:12931742 GeneID:945082 KEGG:ecj:Y75_p0425 KEGG:eco:b0437
PATRIC:32116027 EchoBASE:EB0156 EcoGene:EG10158
BioCyc:EcoCyc:EG10158-MONOMER BioCyc:ECOL316407:JW0427-MONOMER
BioCyc:MetaCyc:EG10158-MONOMER EvolutionaryTrace:P0A6G7
Genevestigator:P0A6G7 Uniprot:P0A6G7
Length = 207
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 88/198 (44%), Positives = 137/198 (69%)
Query: 56 QRQHDVP-LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLD 113
+R + P ++ P RG + D LLKER++FL ++D +A+ I++Q+L L+
Sbjct: 6 ERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLE 65
Query: 114 AQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKR 173
A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS + +L G KGKR
Sbjct: 66 AENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKR 125
Query: 174 FAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRD 233
F +PN+RVMIHQP+GG GQ D+EI AREI+ K +++ TG+S EQ+++D +RD
Sbjct: 126 FCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERD 185
Query: 234 RYMSPIEAVEYGIIDGVI 251
R++S EAVEYG++D ++
Sbjct: 186 RFLSAPEAVEYGLVDSIL 203
>TIGR_CMR|DET_0710 [details] [associations]
symbol:DET_0710 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 EMBL:CP000027
GenomeReviews:CP000027_GR MEROPS:S14.001 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
ProtClustDB:PRK00277 OMA:ERDYWMD RefSeq:YP_181451.1
ProteinModelPortal:Q3Z8J8 SMR:Q3Z8J8 STRING:Q3Z8J8 GeneID:3229949
KEGG:det:DET0710 PATRIC:21608483 BioCyc:DETH243164:GJNF-711-MONOMER
Uniprot:Q3Z8J8
Length = 200
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 93/193 (48%), Positives = 135/193 (69%)
Query: 62 PLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKD 120
P + P ++ RG A D LLLKERI+FLG+ I+D VA+ +I+QLL LD +DP KD
Sbjct: 4 PENVVPMVIESSARGERAFDIYSLLLKERIIFLGSQINDQVANLVIAQLLFLDREDPDKD 63
Query: 121 IRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTR 180
I L+++SPGG +SA +A+YD +QL+R VST+ +G++AS A+++L G KGKR+A+PN
Sbjct: 64 ISLYIHSPGGVISAGLAMYDTMQLIRPKVSTICVGVAASMATVLLCAGAKGKRYALPNAT 123
Query: 181 VMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIE 240
+ +HQ MGGA GQ D+EI AREIM +D I+ TG+ E++ D DRD Y++ +
Sbjct: 124 IHMHQAMGGAQGQASDIEIAAREIMRQQDILRNILVKHTGQPMEKIIHDSDRDYYLNAQQ 183
Query: 241 AVEYGIIDGVIDR 253
AVEYG+ID ++ +
Sbjct: 184 AVEYGLIDEILQK 196
>TIGR_CMR|BA_5380 [details] [associations]
symbol:BA_5380 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:198094 "Bacillus anthracis str. Ames"
[GO:0006508 "proteolysis" evidence=ISS] [GO:0009368 "endopeptidase
Clp complex" evidence=ISS] HAMAP:MF_00444 InterPro:IPR001907
InterPro:IPR018215 PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382
Pfam:PF00574 GO:GO:0005524 GO:GO:0005737 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006508
GO:GO:0004252 MEROPS:S14.001 eggNOG:COG0740 HOGENOM:HOG000285833
KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381 TIGRFAMs:TIGR00493
OMA:LVHPPQA ProtClustDB:PRK00277 RefSeq:NP_847553.1
RefSeq:YP_022039.1 RefSeq:YP_031239.1 ProteinModelPortal:Q81X63
SMR:Q81X63 IntAct:Q81X63 DNASU:1084924
EnsemblBacteria:EBBACT00000008224 EnsemblBacteria:EBBACT00000015397
EnsemblBacteria:EBBACT00000024106 GeneID:1084924 GeneID:2818633
GeneID:2848145 KEGG:ban:BA_5380 KEGG:bar:GBAA_5380 KEGG:bat:BAS5000
BioCyc:BANT260799:GJAJ-5075-MONOMER
BioCyc:BANT261594:GJ7F-5251-MONOMER Uniprot:Q81X63
Length = 193
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 87/177 (49%), Positives = 130/177 (73%)
Query: 75 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS 133
RG A D LLK+RI+ LG+ IDD VA++I+SQLL L++QDP KDI +++NSPGGS++
Sbjct: 13 RGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSIT 72
Query: 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQ 193
A MAIYD +Q ++ VST+ +GM+AS + +L G KGKR+A+PN+ MIHQP+GGA GQ
Sbjct: 73 AGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEAMIHQPLGGAQGQ 132
Query: 194 VLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGV 250
++EI A+ I+ ++ +I++ TG+ E +Q+D DRD +M+ +A+EYG+ID +
Sbjct: 133 ATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKALEYGLIDKI 189
>TIGR_CMR|CHY_0325 [details] [associations]
symbol:CHY_0325 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006508
GO:GO:0004252 MEROPS:S14.001 eggNOG:COG0740 HOGENOM:HOG000285833
KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381 TIGRFAMs:TIGR00493
OMA:LVHPPQA ProtClustDB:PRK00277 RefSeq:YP_359188.1
ProteinModelPortal:Q3AF96 SMR:Q3AF96 STRING:Q3AF96 GeneID:3726391
KEGG:chy:CHY_0325 PATRIC:21273821
BioCyc:CHYD246194:GJCN-326-MONOMER Uniprot:Q3AF96
Length = 195
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 87/178 (48%), Positives = 127/178 (71%)
Query: 75 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS 133
RG + D LLK+R +F+G IDD VA+ +I+Q+L L+A+DP KDI L++NSPGG ++
Sbjct: 14 RGERSYDIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVIT 73
Query: 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQ 193
A MAIYD +Q ++ DVST+ +G +AS + +L G KGKRF++P R+MIHQP+GG GQ
Sbjct: 74 AGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQ 133
Query: 194 VLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 251
D++I AREI+ +D +++ TG+ E++++D +RD +MS EA EYGIID VI
Sbjct: 134 ATDIDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKEYGIIDEVI 191
>TAIR|locus:2196120 [details] [associations]
symbol:CLPP5 "nuclear encoded CLP protease 5"
species:3702 "Arabidopsis thaliana" [GO:0004252 "serine-type
endopeptidase activity" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009840 "chloroplastic
endopeptidase Clp complex" evidence=IDA] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0009532 "plastid stroma" evidence=IDA]
[GO:0009579 "thylakoid" evidence=IDA] [GO:0000023 "maltose
metabolic process" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR001907 InterPro:IPR018215
PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0006508
GO:GO:0009941 GO:GO:0004252 EMBL:AC022521 GO:GO:0009534
eggNOG:COG0740 HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562
PANTHER:PTHR10381 GO:GO:0009840 EMBL:AB022326 EMBL:AJ012278
EMBL:BT024859 EMBL:AY084394 IPI:IPI00546407 PIR:T52455
RefSeq:NP_563657.1 UniGene:At.21093 PDB:1R92 PDBsum:1R92
ProteinModelPortal:Q9S834 SMR:Q9S834 IntAct:Q9S834 STRING:Q9S834
MEROPS:S14.A01 PaxDb:Q9S834 PRIDE:Q9S834 ProMEX:Q9S834
EnsemblPlants:AT1G02560.1 GeneID:839433 KEGG:ath:AT1G02560
GeneFarm:806 TAIR:At1g02560 InParanoid:Q9S834 OMA:QGLGMVP
PhylomeDB:Q9S834 ProtClustDB:CLSN2687625 Genevestigator:Q9S834
Uniprot:Q9S834
Length = 298
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 91/190 (47%), Positives = 134/190 (70%)
Query: 62 PLSSAPQTPATAMRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDI 121
P + Q P ++ + L + RI+ G +DD +A+ I++QLL LDA DPTKDI
Sbjct: 96 PAYAQGQGPPPMVQERFQSIISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDI 155
Query: 122 RLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRV 181
++VNSPGGS++A MAI+D ++ +R DVSTV +G++AS + +L GTKGKR+++PN+R+
Sbjct: 156 VMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRI 215
Query: 182 MIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEA 241
MIHQP+GGA G D++IQA E++H+K N ++ TG+S E++ +D DRD +MS EA
Sbjct: 216 MIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEA 275
Query: 242 VEYGIIDGVI 251
EYG+IDGVI
Sbjct: 276 KEYGLIDGVI 285
>TIGR_CMR|GSU_1792 [details] [associations]
symbol:GSU_1792 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:243231 "Geobacter sulfurreducens PCA"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 EMBL:AE017180
GenomeReviews:AE017180_GR MEROPS:S14.001 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
TIGRFAMs:TIGR00493 OMA:LVHPPQA ProtClustDB:PRK00277
RefSeq:NP_952842.1 ProteinModelPortal:Q74C82 SMR:Q74C82
GeneID:2686403 KEGG:gsu:GSU1792 PATRIC:22026431
BioCyc:GSUL243231:GH27-1812-MONOMER Uniprot:Q74C82
Length = 199
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 87/182 (47%), Positives = 131/182 (71%)
Query: 75 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS 133
RG + D LLK+RI+FLG +DD VA+ +I+Q+L L+A+DP KDI L++NSPGG ++
Sbjct: 12 RGERSYDIYSRLLKDRIIFLGGPVDDHVANLVIAQMLFLEAEDPDKDIHLYINSPGGVVT 71
Query: 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQ 193
+ MAIYD +Q ++A VST+ +G +AS +L+L GG KGKRF++ ++R+MIHQP+GG GQ
Sbjct: 72 SGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLKHSRIMIHQPLGGFQGQ 131
Query: 194 VLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 253
D+ I A+EI+ K I++ TG+ +V+ D +RD +MS EA +YGIID +I+R
Sbjct: 132 ATDIHIHAQEILKLKKRLNEILAENTGQQLAKVEADTERDYFMSGAEAKDYGIIDNIIER 191
Query: 254 DS 255
++
Sbjct: 192 NT 193
>TIGR_CMR|SO_1794 [details] [associations]
symbol:SO_1794 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:211586 "Shewanella oneidensis MR-1"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 EMBL:AE014299
GenomeReviews:AE014299_GR MEROPS:S14.001 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
TIGRFAMs:TIGR00493 OMA:LVHPPQA ProtClustDB:PRK00277
RefSeq:NP_717403.1 ProteinModelPortal:Q8EG19 SMR:Q8EG19
GeneID:1169567 KEGG:son:SO_1794 PATRIC:23523211 Uniprot:Q8EG19
Length = 202
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 86/195 (44%), Positives = 134/195 (68%)
Query: 60 DVPLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPT 118
D+ + P +G + D LLKERI+FL +++ +A+ I++QLL L+++ P
Sbjct: 6 DIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPD 65
Query: 119 KDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPN 178
KDI L++NSPGGS++A MAIYD +Q ++ +VSTV +G +AS + +L GG KGKRF +PN
Sbjct: 66 KDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPN 125
Query: 179 TRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSP 238
+RVMIHQP+GG GQ D+ I A+EI+ K+ ++++ TG+ E +++D DRD +MS
Sbjct: 126 SRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNQMLADHTGQPLEVIERDTDRDNFMSA 185
Query: 239 IEAVEYGIIDGVIDR 253
+AVEYG++D V+ +
Sbjct: 186 TQAVEYGLVDAVMTK 200
>TIGR_CMR|CPS_3785 [details] [associations]
symbol:CPS_3785 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:167879 "Colwellia psychrerythraea 34H"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 EMBL:CP000083
GenomeReviews:CP000083_GR MEROPS:S14.001 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
TIGRFAMs:TIGR00493 OMA:LVHPPQA RefSeq:YP_270452.1
ProteinModelPortal:Q47XL8 SMR:Q47XL8 STRING:Q47XL8 GeneID:3522356
KEGG:cps:CPS_3785 PATRIC:21470483
BioCyc:CPSY167879:GI48-3807-MONOMER Uniprot:Q47XL8
Length = 220
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 85/209 (40%), Positives = 138/209 (66%)
Query: 46 STKTLALQQQQRQHDVPLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADA 104
S ++ + Q + + P +G + D LLKER++FL ++D +A+
Sbjct: 8 SQRSSQVSSQSSATGIESALVPMVVEQTAKGERSYDIYSRLLKERVIFLCGQVEDHMANL 67
Query: 105 IISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLI 164
II+QLL L+++ P KDI L++NSPGGS++A MAIYD ++ ++ ++STV +G +AS + +
Sbjct: 68 IIAQLLFLESESPDKDIYLYINSPGGSVTAGMAIYDTMKFIKPNISTVCIGQAASMGAFL 127
Query: 165 LGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFE 224
L GG KGKR+ +PN RVMIHQP+GG GQ D EI A+EI+ KD ++++ TG++ +
Sbjct: 128 LSGGEKGKRYCLPNARVMIHQPLGGFQGQASDFEIHAKEILFIKDKLNKLMAEHTGQTLD 187
Query: 225 QVQKDIDRDRYMSPIEAVEYGIIDGVIDR 253
+V +D DRD ++S AVEYG++D ++++
Sbjct: 188 KVSQDTDRDNFLSAEAAVEYGLVDSILEQ 216
>TIGR_CMR|VC_1922 [details] [associations]
symbol:VC_1922 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006508
GO:GO:0004252 MEROPS:S14.001 eggNOG:COG0740 KO:K01358
InterPro:IPR023562 PANTHER:PTHR10381 TIGRFAMs:TIGR00493 OMA:LVHPPQA
ProtClustDB:PRK00277 PIR:G82139 RefSeq:NP_231556.1
ProteinModelPortal:Q9KQS6 SMR:Q9KQS6 DNASU:2613551 GeneID:2613551
KEGG:vch:VC1922 PATRIC:20082888 Uniprot:Q9KQS6
Length = 200
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 82/186 (44%), Positives = 130/186 (69%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P RG + D LLKER++FL ++D +A+ +++QLL L++++P KDI L++
Sbjct: 10 PMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYI 69
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A M+IYD +Q ++ +VSTV +G + S + +L GG GKR+ +PN+RVMIHQ
Sbjct: 70 NSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQ 129
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GG GQ D++I A+EI+ K+ R+++ TG+ E +++D DRD +MS +AVEYG
Sbjct: 130 PLGGFQGQASDIQIHAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYG 189
Query: 246 IIDGVI 251
++D V+
Sbjct: 190 LVDAVL 195
>UNIPROTKB|P0A526 [details] [associations]
symbol:clpP1 "ATP-dependent Clp protease proteolytic
subunit 1" species:1773 "Mycobacterium tuberculosis" [GO:0005829
"cytosol" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005829
GO:GO:0005886 GO:GO:0005524 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006508 GO:GO:0004252 EMBL:BX842579
eggNOG:COG0740 HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562
PANTHER:PTHR10381 PIR:D70865 RefSeq:NP_337022.1
RefSeq:YP_006515898.1 RefSeq:YP_177883.1 PDB:2C8T PDB:2CBY PDB:2CE3
PDBsum:2C8T PDBsum:2CBY PDBsum:2CE3 ProteinModelPortal:P0A526
SMR:P0A526 MEROPS:S14.008 PhosSite:P12071649 PRIDE:P0A526
EnsemblBacteria:EBMYCT00000001586 EnsemblBacteria:EBMYCT00000071224
GeneID:13319171 GeneID:888176 GeneID:925798 KEGG:mtc:MT2536
KEGG:mtu:Rv2461c KEGG:mtv:RVBD_2461c PATRIC:18127330
TubercuList:Rv2461c OMA:DPTRDIS ProtClustDB:PRK00277
EvolutionaryTrace:P0A526 Uniprot:P0A526
Length = 200
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 80/169 (47%), Positives = 121/169 (71%)
Query: 85 LLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQL 144
LL ERI+FLG+ ++D +A+ + +Q+LLL A+D +KDI L++NSPGGS+SA MAIYD + L
Sbjct: 24 LLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVL 83
Query: 145 VRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREI 204
D++T A+GM+AS +L GTKGKR+A+P+ R+++HQP+GG +G D+ IQA +
Sbjct: 84 APCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQF 143
Query: 205 MHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 253
K R+ + FTG+ E+++ D DRDR+ + EA+EYG +D +I R
Sbjct: 144 AVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 192
>TIGR_CMR|CBU_0738 [details] [associations]
symbol:CBU_0738 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:227377 "Coxiella burnetii RSA 493"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 EMBL:AE016828
GenomeReviews:AE016828_GR MEROPS:S14.001 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
TIGRFAMs:TIGR00493 ProtClustDB:PRK00277 OMA:ARMNELM
RefSeq:NP_819764.1 PDB:3Q7H PDBsum:3Q7H ProteinModelPortal:Q83DJ2
SMR:Q83DJ2 GeneID:1208629 KEGG:cbu:CBU_0738 PATRIC:17930167
BioCyc:CBUR227377:GJ7S-735-MONOMER Uniprot:Q83DJ2
Length = 195
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 80/185 (43%), Positives = 126/185 (68%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P RG A D LLK+R++FL ++D +A+ I+Q+L L++++P KDI L++
Sbjct: 6 PMVVEQTSRGERAYDIYSRLLKDRVIFLVGQVEDHMANLAIAQMLFLESENPNKDINLYI 65
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGG++++ MAIYD +Q V+ DV T+ +G +AS +L+L GG KGKR +P++ VMIHQ
Sbjct: 66 NSPGGAVTSAMAIYDTMQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMIHQ 125
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
+GG GQ D++I A++ D +I++ TG+ E+V+KD +RD +++P EAVEYG
Sbjct: 126 VLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYG 185
Query: 246 IIDGV 250
+ID +
Sbjct: 186 LIDSI 190
>TIGR_CMR|CJE_0185 [details] [associations]
symbol:CJE_0185 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:195099 "Campylobacter jejuni RM1221"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 EMBL:CP000025
GenomeReviews:CP000025_GR MEROPS:S14.001 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
TIGRFAMs:TIGR00493 ProtClustDB:PRK00277 OMA:ERDYWMD
RefSeq:YP_178209.1 ProteinModelPortal:Q5HWX6 SMR:Q5HWX6
STRING:Q5HWX6 GeneID:3230948 KEGG:cjr:CJE0185 PATRIC:20042079
BioCyc:CJEJ195099:GJC0-190-MONOMER Uniprot:Q5HWX6
Length = 194
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 84/188 (44%), Positives = 127/188 (67%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P + RG + D LLK+RI+ L I D +A +I++QLL L+A+DPTKDI L++
Sbjct: 4 PYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYLYI 63
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGG +++ +IYD + ++ DV T+ +G +AS + +L G +GKRFA+PN+R+MIHQ
Sbjct: 64 NSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQ 123
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ D+EIQA+EI+ K I++ T + ++ KD +RD +MS EA EYG
Sbjct: 124 PLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSAQEAKEYG 183
Query: 246 IIDGVIDR 253
+ID V+++
Sbjct: 184 LIDKVLEK 191
>TIGR_CMR|NSE_0752 [details] [associations]
symbol:NSE_0752 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 EMBL:CP000237
GenomeReviews:CP000237_GR MEROPS:S14.001 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
RefSeq:YP_506627.1 ProteinModelPortal:Q2GD19 SMR:Q2GD19
STRING:Q2GD19 GeneID:3931620 KEGG:nse:NSE_0752 PATRIC:22681509
ProtClustDB:CLSK2527690 BioCyc:NSEN222891:GHFU-763-MONOMER
Uniprot:Q2GD19
Length = 201
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 89/192 (46%), Positives = 129/192 (67%)
Query: 61 VPLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTK 119
VP+ QTP RG A D LLKER+VFL I+D +A I++QLL L+A++P K
Sbjct: 4 VPMV-VDQTP----RGERAYDIFSRLLKERVVFLTGPIEDGMASLIVAQLLFLEAENPDK 58
Query: 120 DIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNT 179
DI +++NSPGG ++A ++IYD +Q ++ VSTV +G +AS ASLIL G +GKRFA+P++
Sbjct: 59 DIFMYINSPGGVVTAGLSIYDTMQYIKPSVSTVCVGQAASAASLILASGAEGKRFALPHS 118
Query: 180 RVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPI 239
RVM+HQP GG GQ D+EI +EI+ K I TG + ++++ ++RD ++SP
Sbjct: 119 RVMVHQPSGGVRGQATDMEIHVKEILQLKRMINEIYQKHTGETIKKIETLLERDTFLSPE 178
Query: 240 EAVEYGIIDGVI 251
EA + GIID +I
Sbjct: 179 EAKKVGIIDDII 190
>TIGR_CMR|BA_2788 [details] [associations]
symbol:BA_2788 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:198094 "Bacillus anthracis str. Ames"
[GO:0006508 "proteolysis" evidence=ISS] [GO:0009368 "endopeptidase
Clp complex" evidence=ISS] HAMAP:MF_00444 InterPro:IPR001907
InterPro:IPR018215 PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382
Pfam:PF00574 GO:GO:0005524 GO:GO:0005737 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006508
GO:GO:0004252 RefSeq:NP_845137.1 RefSeq:YP_019430.1
RefSeq:YP_028858.1 ProteinModelPortal:Q81PL4 SMR:Q81PL4
MEROPS:S14.001 DNASU:1086459 EnsemblBacteria:EBBACT00000008369
EnsemblBacteria:EBBACT00000015150 EnsemblBacteria:EBBACT00000020004
GeneID:1086459 GeneID:2817074 GeneID:2849926 KEGG:ban:BA_2788
KEGG:bar:GBAA_2788 KEGG:bat:BAS2599 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 OMA:DIVTICI ProtClustDB:CLSK916804
BioCyc:BANT260799:GJAJ-2663-MONOMER
BioCyc:BANT261594:GJ7F-2758-MONOMER InterPro:IPR023562
PANTHER:PTHR10381 TIGRFAMs:TIGR00493 Uniprot:Q81PL4
Length = 193
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 81/174 (46%), Positives = 122/174 (70%)
Query: 80 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIY 139
D LLK+RIV +G+ I+D VA ++++QLL L+A+D KDI L++NSPGGS +A AI
Sbjct: 19 DIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 78
Query: 140 DVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEI 199
D + L++ DV T+ +G +AS +L+L G KGKRFA+PN+ +MIHQP+GGA GQ ++EI
Sbjct: 79 DTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEI 138
Query: 200 QAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 253
A+ I+ K + ++I+ TG+ E+V D +RD +M+ EA YGI+D V+ +
Sbjct: 139 TAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKAYGIVDDVVTK 192
>TIGR_CMR|APH_0970 [details] [associations]
symbol:APH_0970 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 EMBL:CP000235
GenomeReviews:CP000235_GR MEROPS:S14.001 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
TIGRFAMs:TIGR00493 ProtClustDB:PRK00277 RefSeq:YP_505537.1
ProteinModelPortal:Q2GJB4 SMR:Q2GJB4 STRING:Q2GJB4 GeneID:3930516
KEGG:aph:APH_0970 PATRIC:20950656 OMA:ARMNELM
BioCyc:APHA212042:GHPM-982-MONOMER Uniprot:Q2GJB4
Length = 197
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 84/192 (43%), Positives = 126/192 (65%)
Query: 63 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDI 121
++ P RG A D LLKERI+F+ I+D +A I++QL+ L+A+DP KDI
Sbjct: 1 MNLVPMVVEQTGRGERAYDIYSRLLKERIIFVTGPIEDEMASLIVAQLVFLEAEDPEKDI 60
Query: 122 RLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRV 181
+++NSPGG ++A ++IYD +Q ++ +V+T+ LG +AS SL+L G G R A+PN+RV
Sbjct: 61 SMYINSPGGVVTAGLSIYDTMQYIKPNVATLCLGQAASMGSLLLCAGAPGMRCALPNSRV 120
Query: 182 MIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEA 241
MIHQP GG GQ D+EI AREI+ K I TG+S E+++ ++RD +M +A
Sbjct: 121 MIHQPSGGFRGQATDIEIHAREILEIKRRLNEIFVRHTGKSLEEIESSMERDNFMIAEKA 180
Query: 242 VEYGIIDGVIDR 253
++GIID VI++
Sbjct: 181 RDFGIIDKVIEK 192
>WB|WBGene00014172 [details] [associations]
symbol:clpp-1 species:6239 "Caenorhabditis elegans"
[GO:0004252 "serine-type endopeptidase activity" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0030163 "protein catabolic process" evidence=IMP]
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0005759 GO:GO:0006508 GO:GO:0010171
GO:GO:0040017 GO:GO:0040018 GO:GO:0004252 GO:GO:0040035
GO:GO:0030163 MEROPS:S14.001 eggNOG:COG0740 HOGENOM:HOG000285833
InterPro:IPR023562 PANTHER:PTHR10381 EMBL:Z49073 PIR:C88288
RefSeq:NP_001254239.1 RefSeq:NP_001254240.1 RefSeq:NP_001254241.1
ProteinModelPortal:Q27539 SMR:Q27539 STRING:Q27539 PaxDb:Q27539
EnsemblMetazoa:ZK970.2d GeneID:174594 KEGG:cel:CELE_ZK970.2
CTD:174594 WormBase:ZK970.2a WormBase:ZK970.2b WormBase:ZK970.2d
GeneTree:ENSGT00390000005830 InParanoid:Q27539 OMA:LVHPPQA
BRENDA:3.4.21.92 NextBio:884698 Uniprot:Q27539
Length = 221
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 78/179 (43%), Positives = 120/179 (67%)
Query: 80 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIY 139
D LL++RIV L +DDF+A A+I+QLL L ++ K I +++NSPGGS++A +AIY
Sbjct: 41 DIYSRLLRDRIVCLMTPVDDFIASALIAQLLFLQSESGKKPIHMYINSPGGSVTAGLAIY 100
Query: 140 DVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEI 199
D +Q++ A VST +G ++S SL+L G KG R A+PN+R+M+HQP GGA G D+ I
Sbjct: 101 DTIQMISAPVSTWVIGQASSMGSLLLCAGEKGMRSALPNSRIMVHQPSGGAQGTCSDIVI 160
Query: 200 QAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIP 258
+A EI K I TG S+++++K +DRDR+MS EA+++G++D + + +P
Sbjct: 161 RAEEITRLKRRLNEIYVHHTGMSYDEIEKTLDRDRFMSAHEALKFGLVDQIETHNGSMP 219
>ZFIN|ZDB-GENE-030131-7860 [details] [associations]
symbol:clpp "ClpP caseinolytic peptidase,
ATP-dependent, proteolytic subunit homolog (E. coli)" species:7955
"Danio rerio" [GO:0004252 "serine-type endopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008236 "serine-type peptidase activity"
evidence=IEA] HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215
PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574
ZFIN:ZDB-GENE-030131-7860 GO:GO:0006508 GO:GO:0004252 EMBL:BX649502
InterPro:IPR023562 PANTHER:PTHR10381 GeneTree:ENSGT00390000005830
OMA:LVHPPQA MEROPS:S14.003 HOVERGEN:HBG001689 IPI:IPI00481150
UniGene:Dr.76726 SMR:Q5PNM4 Ensembl:ENSDART00000006604
Ensembl:ENSDART00000131951 InParanoid:Q5PNM4 Uniprot:Q5PNM4
Length = 266
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 90/212 (42%), Positives = 127/212 (59%)
Query: 44 RISTKTLALQQQQRQHDVPLSSAPQTPATAM---RGAEA-DAMGLLLKERIVFLGNNIDD 99
R TL + + Q P SS P P RG A D LL+ERI+ + IDD
Sbjct: 7 RCGVSTLRVSRSVHQSS-PWSS-PLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDD 64
Query: 100 FVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSAS 159
VA +I+QLL L ++ K I +++NSPGG +++ +AIYD +Q + +ST +G +AS
Sbjct: 65 SVASLVIAQLLFLQSESNNKPIHMYINSPGGVVTSGLAIYDTMQYILNPISTWCVGQAAS 124
Query: 160 TASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFT 219
SL+L GT G R ++PN R+M+HQP GGA GQ D+ IQA EI+ K I S T
Sbjct: 125 MGSLLLAAGTAGMRHSLPNARIMVHQPSGGARGQATDIAIQAEEILKLKRQINNIYSKHT 184
Query: 220 GRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 251
G+ E ++ ++RDRYMSP+EA ++GIID V+
Sbjct: 185 GQLLETIESVMERDRYMSPMEAQDFGIIDKVL 216
>UNIPROTKB|P63783 [details] [associations]
symbol:clpP2 "ATP-dependent Clp protease proteolytic
subunit 2" species:1773 "Mycobacterium tuberculosis" [GO:0005515
"protein binding" evidence=IPI] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005829
GO:GO:0005886 GO:GO:0005524 GO:GO:0040007 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006508 GO:GO:0004252 EMBL:BX842579 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
BRENDA:3.4.21.92 PIR:C70865 RefSeq:NP_216976.1 RefSeq:NP_337021.1
RefSeq:YP_006515897.1 ProteinModelPortal:P63783 SMR:P63783
IntAct:P63783 MEROPS:S14.009 PRIDE:P63783
EnsemblBacteria:EBMYCT00000002187 EnsemblBacteria:EBMYCT00000071970
GeneID:13319170 GeneID:888174 GeneID:925797 KEGG:mtc:MT2535
KEGG:mtu:Rv2460c KEGG:mtv:RVBD_2460c PATRIC:18127328
TubercuList:Rv2460c OMA:IQGQVSD ProtClustDB:PRK12553 Uniprot:P63783
Length = 214
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 82/177 (46%), Positives = 120/177 (67%)
Query: 78 EADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMA 137
E++ L +ERI+FLG +DD A+ I++QLL+L++ DP +DI +++NSPGG ++ MA
Sbjct: 29 ESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITMYINSPGGGFTSLMA 88
Query: 138 IYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPM--GGASGQVL 195
IYD +Q VRAD+ TV LG +AS A+++L GT GKR A+PN RV+IHQP G GQ
Sbjct: 89 IYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSLSGVIQGQFS 148
Query: 196 DVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 252
D+EIQA EI + ++ TG+ ++KD DRD+ ++ EA +YGIID V++
Sbjct: 149 DLEIQAAEIERMRTLMETTLARHTGKDAGVIRKDTDRDKILTAEEAKDYGIIDTVLE 205
>TIGR_CMR|ECH_0901 [details] [associations]
symbol:ECH_0901 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006508
GO:GO:0004252 MEROPS:S14.001 eggNOG:COG0740 HOGENOM:HOG000285833
KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381 TIGRFAMs:TIGR00493
ProtClustDB:PRK00277 RefSeq:YP_507695.1 ProteinModelPortal:Q2GFT8
SMR:Q2GFT8 STRING:Q2GFT8 GeneID:3928015 KEGG:ech:ECH_0901
PATRIC:20577202 OMA:RDPVEIF BioCyc:ECHA205920:GJNR-904-MONOMER
Uniprot:Q2GFT8
Length = 199
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 80/192 (41%), Positives = 124/192 (64%)
Query: 63 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDI 121
++ P RG A D LLKERI+F+ I+D +A I++QL+ L++++P K+I
Sbjct: 1 MTLVPMVVEQTSRGERAYDIYSRLLKERIIFITGPIEDQMASLIVAQLIFLESENPEKEI 60
Query: 122 RLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRV 181
+++NSPGG ++A ++IYD +Q ++ VST+ LG +AS SL+L G G R+A+PN+R+
Sbjct: 61 CMYINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGSLLLAAGEPGMRYALPNSRI 120
Query: 182 MIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEA 241
MIHQP GG GQ D+EI A+EI+ K I TGR +V +++RD +M +A
Sbjct: 121 MIHQPSGGFQGQATDIEIHAKEILDIKGRLNDIYVKHTGRDLSEVVANMERDNFMRAEKA 180
Query: 242 VEYGIIDGVIDR 253
++GIID VI++
Sbjct: 181 KDFGIIDKVIEK 192
>TIGR_CMR|SPO_1003 [details] [associations]
symbol:SPO_1003 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0009368
"endopeptidase Clp complex" evidence=ISS] HAMAP:MF_00444
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006508
GO:GO:0004252 MEROPS:S14.001 eggNOG:COG0740 HOGENOM:HOG000285833
KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381 OMA:LVHPPQA
ProtClustDB:PRK00277 RefSeq:YP_166255.1 ProteinModelPortal:Q5LUQ0
SMR:Q5LUQ0 GeneID:3193881 KEGG:sil:SPO1003 PATRIC:23375299
Uniprot:Q5LUQ0
Length = 209
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 80/190 (42%), Positives = 122/190 (64%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P RG A D LLKERI+F+ I D ++ I++QLL L+A++P K+I +++
Sbjct: 14 PMVVEQTSRGERAYDIFSRLLKERIIFINGPIHDGMSHLIVAQLLHLEAENPNKEISIYI 73
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGG +++ ++IYD +Q ++ ST+ +G +AS S++L GG KG RF++PN+R+M+HQ
Sbjct: 74 NSPGGVVTSGLSIYDTMQYIKPKCSTLVIGQAASMGSVLLAGGEKGMRFSLPNSRIMVHQ 133
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P GG GQ D+ I A E KD I TG++ + V+K +DRD +MSP EA E+G
Sbjct: 134 PSGGYQGQASDIMIHAAETQKLKDRLYDIYVKHTGQTKKAVEKALDRDNFMSPEEAKEWG 193
Query: 246 IIDGVIDRDS 255
ID +++ S
Sbjct: 194 HIDEIVESRS 203
>TAIR|locus:2178282 [details] [associations]
symbol:NCLPP7 "nuclear-encoded CLP protease P7"
species:3702 "Arabidopsis thaliana" [GO:0004252 "serine-type
endopeptidase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009840
"chloroplastic endopeptidase Clp complex" evidence=IDA] [GO:0005759
"mitochondrial matrix" evidence=IDA] [GO:0009532 "plastid stroma"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0050897 "cobalt ion binding" evidence=IDA] [GO:0019243
"methylglyoxal catabolic process to D-lactate" evidence=RCA]
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005739
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008270
GO:GO:0006508 EMBL:AB006708 GO:GO:0004252 GO:GO:0050897
GO:GO:0009535 eggNOG:COG0740 HOGENOM:HOG000285833 KO:K01358
InterPro:IPR023562 PANTHER:PTHR10381 OMA:LVHPPQA EMBL:AK118523
EMBL:BT005261 IPI:IPI00533430 RefSeq:NP_568427.1 UniGene:At.31024
PDB:1R8V PDBsum:1R8V ProteinModelPortal:Q9FN42 SMR:Q9FN42
STRING:Q9FN42 MEROPS:S14.A02 PaxDb:Q9FN42 PRIDE:Q9FN42
EnsemblPlants:AT5G23140.1 GeneID:832378 KEGG:ath:AT5G23140
GeneFarm:805 TAIR:At5g23140 InParanoid:Q9FN42 PhylomeDB:Q9FN42
ProtClustDB:CLSN2917700 Genevestigator:Q9FN42 GO:GO:0009840
Uniprot:Q9FN42
Length = 241
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 81/190 (42%), Positives = 122/190 (64%)
Query: 64 SSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIR 122
S P + RG A D LLKERI+ + I+D + +++QLL L++++P+K I
Sbjct: 31 SLIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIH 90
Query: 123 LFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVM 182
+++NSPGG ++A +AIYD +Q +R+ +ST+ LG +AS ASL+L G KG+R ++PN VM
Sbjct: 91 MYLNSPGGHVTAGLAIYDTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVM 150
Query: 183 IHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAV 242
IHQP GG SGQ D+ I ++I+ D + TG+ + V ++DRD +M+P EA
Sbjct: 151 IHQPSGGYSGQAKDITIHTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPEEAK 210
Query: 243 EYGIIDGVID 252
+GIID VID
Sbjct: 211 AFGIIDEVID 220
>GENEDB_PFALCIPARUM|PFC0310c [details] [associations]
symbol:PFC0310c "ATP-dependent CLP protease,
putative" species:5833 "Plasmodium falciparum" [GO:0030163 "protein
catabolic process" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215
PRINTS:PR00127 PROSITE:PS00382 Pfam:PF00574 GO:GO:0006508
GO:GO:0004252 GO:GO:0030163 EMBL:AL844502 KO:K01358
InterPro:IPR023562 PANTHER:PTHR10381 GO:GO:0020011
RefSeq:XP_001351149.1 PDB:2F6I PDBsum:2F6I
ProteinModelPortal:O97252 SMR:O97252 MEROPS:S14.011
EnsemblProtists:PFC0310c:mRNA GeneID:814391 KEGG:pfa:PFC0310c
EuPathDB:PlasmoDB:PF3D7_0307400 ProtClustDB:CLSZ2500462
EvolutionaryTrace:O97252 Uniprot:O97252
Length = 370
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 78/179 (43%), Positives = 121/179 (67%)
Query: 74 MRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS 133
++ + D K+RI++L + I+ AD +ISQLL LD + DI++++NSPGGS++
Sbjct: 180 IKDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHN-DIKIYINSPGGSIN 238
Query: 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQ 193
+AI D+ +++D+ T++ G+ AS AS+IL G KGKR ++PN R+MIHQP+G A G
Sbjct: 239 EGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGH 298
Query: 194 VLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 252
D+EIQ +EI++ K +S FT ++ E ++KD DRD YM+ +EA +YGIID VI+
Sbjct: 299 PQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIE 357
>UNIPROTKB|O97252 [details] [associations]
symbol:PFC0310c "ATP-dependent CLP protease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] [GO:0030163 "protein catabolic process" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00382 Pfam:PF00574 GO:GO:0006508 GO:GO:0004252
GO:GO:0030163 EMBL:AL844502 KO:K01358 InterPro:IPR023562
PANTHER:PTHR10381 GO:GO:0020011 RefSeq:XP_001351149.1 PDB:2F6I
PDBsum:2F6I ProteinModelPortal:O97252 SMR:O97252 MEROPS:S14.011
EnsemblProtists:PFC0310c:mRNA GeneID:814391 KEGG:pfa:PFC0310c
EuPathDB:PlasmoDB:PF3D7_0307400 ProtClustDB:CLSZ2500462
EvolutionaryTrace:O97252 Uniprot:O97252
Length = 370
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 78/179 (43%), Positives = 121/179 (67%)
Query: 74 MRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS 133
++ + D K+RI++L + I+ AD +ISQLL LD + DI++++NSPGGS++
Sbjct: 180 IKDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHN-DIKIYINSPGGSIN 238
Query: 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQ 193
+AI D+ +++D+ T++ G+ AS AS+IL G KGKR ++PN R+MIHQP+G A G
Sbjct: 239 EGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGH 298
Query: 194 VLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 252
D+EIQ +EI++ K +S FT ++ E ++KD DRD YM+ +EA +YGIID VI+
Sbjct: 299 PQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIE 357
>UNIPROTKB|Q16740 [details] [associations]
symbol:CLPP "Putative ATP-dependent Clp protease
proteolytic subunit, mitochondrial" species:9606 "Homo sapiens"
[GO:0004252 "serine-type endopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0005759 "mitochondrial matrix" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008233 "peptidase
activity" evidence=TAS] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005739
GO:GO:0005524 GO:GO:0005759 GO:GO:0006508 GO:GO:0004252
GO:GO:0008233 eggNOG:COG0740 HOGENOM:HOG000285833 KO:K01358
InterPro:IPR023562 PANTHER:PTHR10381 OMA:LVHPPQA BRENDA:3.4.21.92
MEROPS:S14.003 CTD:8192 HOVERGEN:HBG001689 OrthoDB:EOG46T32D
EMBL:Z50853 EMBL:AK311973 EMBL:BC002956 IPI:IPI00003870 PIR:S68421
RefSeq:NP_006003.1 UniGene:Hs.515092 PDB:1TG6 PDBsum:1TG6
ProteinModelPortal:Q16740 SMR:Q16740 DIP:DIP-50384N IntAct:Q16740
STRING:Q16740 PhosphoSite:Q16740 DMDM:3023512 PaxDb:Q16740
PeptideAtlas:Q16740 PRIDE:Q16740 DNASU:8192 Ensembl:ENST00000245816
GeneID:8192 KEGG:hsa:8192 UCSC:uc002mem.1 GeneCards:GC19P006315
HGNC:HGNC:2084 HPA:HPA010649 MIM:601119 neXtProt:NX_Q16740
PharmGKB:PA26610 InParanoid:Q16740 PhylomeDB:Q16740
EvolutionaryTrace:Q16740 GenomeRNAi:8192 NextBio:30886
ArrayExpress:Q16740 Bgee:Q16740 CleanEx:HS_CLPP
Genevestigator:Q16740 GermOnline:ENSG00000125656 Uniprot:Q16740
Length = 277
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 90/215 (41%), Positives = 128/215 (59%)
Query: 43 RRISTKTL--ALQQQQRQHDVPLSSAPQTPATAM---RGAEA-DAMGLLLKERIVFLGNN 96
+R +TL L Q+ H + P P RG A D LL+ERIV +
Sbjct: 31 QRPPQRTLQNGLALQRCLHATATRALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGP 90
Query: 97 IDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGM 156
IDD VA +I+QLL L ++ K I +++NSPGG ++A +AIYD +Q + + T +G
Sbjct: 91 IDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQ 150
Query: 157 SASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIIS 216
+AS SL+L GT G R ++PN+R+MIHQP GGA GQ D+ IQA EIM K I +
Sbjct: 151 AASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYA 210
Query: 217 GFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 251
T +S + ++ ++RDRYMSP+EA E+GI+D V+
Sbjct: 211 KHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVL 245
>UNIPROTKB|Q2KHU4 [details] [associations]
symbol:CLPP "Putative ATP-dependent Clp protease
proteolytic subunit, mitochondrial" species:9913 "Bos taurus"
[GO:0005759 "mitochondrial matrix" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004252 "serine-type endopeptidase activity" evidence=IEA]
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005759 GO:GO:0006508 GO:GO:0004252 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
GeneTree:ENSGT00390000005830 OMA:LVHPPQA EMBL:BC112880
IPI:IPI00700802 RefSeq:NP_001039879.1 UniGene:Bt.54443 HSSP:P0A6G7
ProteinModelPortal:Q2KHU4 SMR:Q2KHU4 STRING:Q2KHU4 MEROPS:S14.003
PRIDE:Q2KHU4 Ensembl:ENSBTAT00000019577 GeneID:535981
KEGG:bta:535981 CTD:8192 HOVERGEN:HBG001689 InParanoid:Q2KHU4
OrthoDB:EOG46T32D NextBio:20876866 Uniprot:Q2KHU4
Length = 272
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 86/204 (42%), Positives = 123/204 (60%)
Query: 52 LQQQQRQHDVPLSSAPQTPATAM---RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIIS 107
L Q+ H + P P RG A D LL+ERIV + IDD VA +I+
Sbjct: 38 LAPQRNLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIA 97
Query: 108 QLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGG 167
QLL L ++ K I +++NSPGG +++ +AIYD +Q + + T +G +AS SL+L
Sbjct: 98 QLLFLQSESNKKPIHMYINSPGGVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAA 157
Query: 168 GTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQ 227
GT G R ++PN+R+MIHQP GGA GQ D+ IQA EIM K I + T +S + ++
Sbjct: 158 GTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVIE 217
Query: 228 KDIDRDRYMSPIEAVEYGIIDGVI 251
++RDRYMSP+EA E+GI+D V+
Sbjct: 218 SAMERDRYMSPMEAQEFGILDKVL 241
>UNIPROTKB|F1SBT2 [details] [associations]
symbol:CLPP "ATP-dependent Clp protease proteolytic
subunit" species:9823 "Sus scrofa" [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0004252
"serine-type endopeptidase activity" evidence=IEA] HAMAP:MF_00444
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005739
GO:GO:0006508 GO:GO:0004252 InterPro:IPR023562 PANTHER:PTHR10381
GeneTree:ENSGT00390000005830 OMA:LVHPPQA EMBL:CU929921
EMBL:AEMK01192585 EMBL:FP312741 Ensembl:ENSSSCT00000014789
Uniprot:F1SBT2
Length = 273
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 87/204 (42%), Positives = 123/204 (60%)
Query: 52 LQQQQRQHDVPLSSAPQTPATAM---RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIIS 107
L Q+ H + P P RG A D LL+ERIV + IDD VA +I+
Sbjct: 38 LVMQRSLHATVSRALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIA 97
Query: 108 QLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGG 167
QLL L ++ K I +++NSPGG +++ +AIYD +Q + + T +G +AS SL+L
Sbjct: 98 QLLFLQSESNKKPIHMYINSPGGVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAA 157
Query: 168 GTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQ 227
GT G R ++PN+R+MIHQP GGA GQ D+ IQA EIM K I + T +S + +
Sbjct: 158 GTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVIV 217
Query: 228 KDIDRDRYMSPIEAVEYGIIDGVI 251
K ++RDRYMSP+EA E+GI+D V+
Sbjct: 218 KAMERDRYMSPMEAQEFGILDKVL 241
>UNIPROTKB|E2QUV8 [details] [associations]
symbol:CLPP "ATP-dependent Clp protease proteolytic
subunit" species:9615 "Canis lupus familiaris" [GO:0006508
"proteolysis" evidence=IEA] [GO:0004252 "serine-type endopeptidase
activity" evidence=IEA] HAMAP:MF_00444 InterPro:IPR001907
InterPro:IPR018215 PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382
Pfam:PF00574 GO:GO:0006508 GO:GO:0004252 InterPro:IPR023562
PANTHER:PTHR10381 GeneTree:ENSGT00390000005830 EMBL:AAEX03012495
Ensembl:ENSCAFT00000029683 OMA:NEESAME NextBio:20897274
Uniprot:E2QUV8
Length = 301
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 81/178 (45%), Positives = 116/178 (65%)
Query: 75 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS 133
RG A D LL+ERIV + IDD VA +I+QLL L ++ K I +++NSPGG ++
Sbjct: 92 RGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGMVT 151
Query: 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQ 193
+ +AIYD +Q + + T +G +AS SL+L GT G R ++PN+R+MIHQP GGA GQ
Sbjct: 152 SGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQ 211
Query: 194 VLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 251
D+ IQA EIM K I + T +S + ++ ++RDRYMSP+EA E+GI+D V+
Sbjct: 212 ATDIAIQAEEIMKLKKQLYGIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVL 269
>MGI|MGI:1858213 [details] [associations]
symbol:Clpp "ClpP caseinolytic peptidase, ATP-dependent,
proteolytic subunit" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0004252 "serine-type
endopeptidase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISO;IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0006515 "misfolded or incompletely synthesized
protein catabolic process" evidence=ISA] [GO:0008233 "peptidase
activity" evidence=ISA] [GO:0008236 "serine-type peptidase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042802 "identical protein binding" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 MGI:MGI:1858213
GO:GO:0005739 GO:GO:0005524 GO:GO:0005759 GO:GO:0004252
GO:GO:0006515 eggNOG:COG0740 HOGENOM:HOG000285833 KO:K01358
InterPro:IPR023562 PANTHER:PTHR10381 GeneTree:ENSGT00390000005830
OMA:LVHPPQA BRENDA:3.4.21.92 MEROPS:S14.003 CTD:8192
HOVERGEN:HBG001689 OrthoDB:EOG46T32D EMBL:AJ005253 EMBL:AJ012249
EMBL:AJ012250 EMBL:AJ012251 EMBL:AJ012252 EMBL:AJ012253
EMBL:AK004024 EMBL:AK145765 EMBL:AK168053 EMBL:BC001998
IPI:IPI00133270 RefSeq:NP_059089.1 UniGene:Mm.287892
ProteinModelPortal:O88696 SMR:O88696 STRING:O88696
PhosphoSite:O88696 REPRODUCTION-2DPAGE:IPI00133270
REPRODUCTION-2DPAGE:O88696 PaxDb:O88696 PRIDE:O88696
Ensembl:ENSMUST00000002735 GeneID:53895 KEGG:mmu:53895
UCSC:uc008ddm.2 InParanoid:O88696 NextBio:310791 Bgee:O88696
Genevestigator:O88696 GermOnline:ENSMUSG00000002660 Uniprot:O88696
Length = 272
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 81/178 (45%), Positives = 116/178 (65%)
Query: 75 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS 133
RG A D LL+ERIV + IDD VA +I+QLL L ++ K I +++NSPGG ++
Sbjct: 64 RGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVT 123
Query: 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQ 193
A +AIYD +Q + + T +G +AS SL+L G+ G R ++PN+R+MIHQP GGA GQ
Sbjct: 124 AGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQ 183
Query: 194 VLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 251
D+ IQA EIM K I + T +S + ++ ++RDRYMSP+EA E+GI+D V+
Sbjct: 184 ATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVL 241
>RGD|1588583 [details] [associations]
symbol:Clpp "ClpP caseinolytic peptidase, ATP-dependent,
proteolytic subunit homolog (E. coli)" species:10116 "Rattus
norvegicus" [GO:0005515 "protein binding" evidence=IPI] [GO:0005739
"mitochondrion" evidence=ISO;IDA] [GO:0042802 "identical protein
binding" evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] NCBI:XP_001055676 REFSEQ:XM_001055676
Length = 272
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 81/178 (45%), Positives = 116/178 (65%)
Query: 75 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS 133
RG A D LL+ERIV + IDD VA +I+QLL L ++ K I +++NSPGG ++
Sbjct: 64 RGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVT 123
Query: 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQ 193
A +AIYD +Q + + T +G +AS SL+L G+ G R ++PN+R+MIHQP GGA GQ
Sbjct: 124 AGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQ 183
Query: 194 VLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 251
D+ IQA EIM K I + T +S + ++ ++RDRYMSP+EA E+GI+D V+
Sbjct: 184 ATDIAIQAEEIMKLKRQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVL 241
>FB|FBgn0032229 [details] [associations]
symbol:CG5045 species:7227 "Drosophila melanogaster"
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0004252 "serine-type
endopeptidase activity" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215
PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574
EMBL:AE014134 GO:GO:0006508 GO:GO:0004252 KO:K01358
InterPro:IPR023562 PANTHER:PTHR10381 GeneTree:ENSGT00390000005830
OMA:LVHPPQA MEROPS:S14.003 HSSP:P19245 EMBL:AY119497 EMBL:FM245207
RefSeq:NP_609388.1 UniGene:Dm.11171 SMR:Q9VKY3 MINT:MINT-974885
STRING:Q9VKY3 EnsemblMetazoa:FBtr0080000 EnsemblMetazoa:FBtr0332189
GeneID:34402 KEGG:dme:Dmel_CG5045 UCSC:CG5045-RA
FlyBase:FBgn0032229 InParanoid:Q9VKY3 OrthoDB:EOG4VHHP8
GenomeRNAi:34402 NextBio:788329 Uniprot:Q9VKY3
Length = 253
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 75/179 (41%), Positives = 112/179 (62%)
Query: 75 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS 133
RG A D LLKERI+ L NI D ++ +++QLL L +++ K I L++NSPGG ++
Sbjct: 39 RGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVT 98
Query: 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQ 193
A +AIYD +Q V+ ++T +G + S SL+L G G R+++PN R+MIHQP GGA GQ
Sbjct: 99 AGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQGQ 158
Query: 194 VLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 252
D+ I A EI+ K T I ++E++ ++RD +M+P EA GIID V++
Sbjct: 159 ATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMSGRMERDHFMTPEEAKVLGIIDHVLE 217
>UNIPROTKB|G4MLM6 [details] [associations]
symbol:MGG_06757 "ATP-dependent Clp protease proteolytic
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] HAMAP:MF_00444 InterPro:IPR001907
InterPro:IPR018215 PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382
Pfam:PF00574 GO:GO:0006508 GO:GO:0004252 EMBL:CM001231
MEROPS:S14.001 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
RefSeq:XP_003709471.1 ProteinModelPortal:G4MLM6
EnsemblFungi:MGG_06757T0 GeneID:2684930 KEGG:mgr:MGG_06757
Uniprot:G4MLM6
Length = 274
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 75/201 (37%), Positives = 123/201 (61%)
Query: 58 QHDVPLSSAPQTPATAMRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDP 117
Q VP+ + A R +D LL+ERIV L IDD+ ++ +QLL L+ P
Sbjct: 44 QAGVPMPLVTEVTAGGWR--TSDIFSKLLQERIVCLNGPIDDWTQASVTAQLLWLEQDSP 101
Query: 118 TKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMP 177
K I L++NSPGG +S+ +AIYD + + + V TV +GM+AS +++L GG G+R+A+P
Sbjct: 102 HKPITLYINSPGGQVSSGLAIYDTMNYISSPVHTVCVGMAASMGAILLLGGAAGQRYALP 161
Query: 178 NTRVMIHQPMGGASGQVLDVEIQAREIMHNK----DNFTRIISGFTGRS-F--EQVQKDI 230
++++M+HQP+G GQ D+ I A++I + D R ++ GR F ++V + +
Sbjct: 162 HSQIMVHQPLGSTQGQASDIIIYAKQITRIRSQINDIMRRHLNTAAGRERFAAQEVDEMM 221
Query: 231 DRDRYMSPIEAVEYGIIDGVI 251
+RD+Y++ EAVE GI+D ++
Sbjct: 222 ERDKYLTADEAVELGIVDKIL 242
>TAIR|locus:2034625 [details] [associations]
symbol:CLP2 "CLP protease proteolytic subunit 2"
species:3702 "Arabidopsis thaliana" [GO:0004252 "serine-type
endopeptidase activity" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009840 "chloroplastic
endopeptidase Clp complex" evidence=IDA] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA]
[GO:0009658 "chloroplast organization" evidence=IMP] [GO:0006364
"rRNA processing" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010207 "photosystem II assembly"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
[GO:0035304 "regulation of protein dephosphorylation" evidence=RCA]
[GO:0042793 "transcription from plastid promoter" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR001907 PRINTS:PR00127 Pfam:PF00574
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006508 GO:GO:0009941
GO:GO:0004252 GO:GO:0009658 GO:GO:0009534 GO:GO:0010287
eggNOG:COG0740 HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562
PANTHER:PTHR10381 GO:GO:0009840 EMBL:AB022327 EMBL:AC025416
EMBL:AY057617 EMBL:AY062770 EMBL:AY081641 IPI:IPI00516669
PIR:T52454 RefSeq:NP_563907.1 UniGene:At.20902 PDB:1R97 PDBsum:1R97
ProteinModelPortal:Q9XJ36 SMR:Q9XJ36 IntAct:Q9XJ36 STRING:Q9XJ36
PaxDb:Q9XJ36 PRIDE:Q9XJ36 ProMEX:Q9XJ36 EnsemblPlants:AT1G12410.1
GeneID:837797 KEGG:ath:AT1G12410 GeneFarm:808 TAIR:At1g12410
InParanoid:Q9XJ36 OMA:IWNALYR PhylomeDB:Q9XJ36
ProtClustDB:CLSN2687781 Genevestigator:Q9XJ36 Uniprot:Q9XJ36
Length = 279
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 61/172 (35%), Positives = 109/172 (63%)
Query: 80 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIY 139
D L +ER++F+G NID+ ++ I++ +L LD D ++ I +++N PGG L+ ++AIY
Sbjct: 89 DIWNALYRERVIFIGQNIDEEFSNQILATMLYLDTLDDSRRIYMYLNGPGGDLTPSLAIY 148
Query: 140 DVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEI 199
D ++ +++ V T +G++ + A +L G KG RFAMP +R+ + P G A GQ D++
Sbjct: 149 DTMKSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQSPAGAARGQADDIQN 208
Query: 200 QAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 251
+A+E+ +D ++ TG+ E+V KD+ R + + EA+EYG+ID ++
Sbjct: 209 EAKELSRIRDYLFNELAKNTGQPAERVFKDLSRVKRFNAEEAIEYGLIDKIV 260
>TAIR|locus:2130449 [details] [associations]
symbol:CLPR4 "CLP protease R subunit 4" species:3702
"Arabidopsis thaliana" [GO:0004252 "serine-type endopeptidase
activity" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0009532 "plastid stroma" evidence=IDA]
[GO:0000302 "response to reactive oxygen species" evidence=IMP]
[GO:0010468 "regulation of gene expression" evidence=IMP]
[GO:0009627 "systemic acquired resistance" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0031347
"regulation of defense response" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA] [GO:0009536
"plastid" evidence=IDA] InterPro:IPR001907 PRINTS:PR00127
Pfam:PF00574 GO:GO:0009570 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0006508 GO:GO:0009941 GO:GO:0004252 GO:GO:0000302
GO:GO:0010468 EMBL:Z97342 EMBL:AL161545 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
EMBL:AK117499 EMBL:AY081275 EMBL:BT000050 EMBL:AY087492
IPI:IPI00525806 PIR:G71438 RefSeq:NP_567521.1 UniGene:At.19677
PDB:1R99 PDBsum:1R99 ProteinModelPortal:Q8LB10 SMR:Q8LB10
IntAct:Q8LB10 STRING:Q8LB10 PaxDb:Q8LB10 PRIDE:Q8LB10 ProMEX:Q8LB10
EnsemblPlants:AT4G17040.1 GeneID:827412 KEGG:ath:AT4G17040
GeneFarm:809 TAIR:At4g17040 InParanoid:Q8LB10 OMA:YFSPSEA
PhylomeDB:Q8LB10 ProtClustDB:CLSN2689477 Genevestigator:Q8LB10
Uniprot:Q8LB10
Length = 305
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 78/219 (35%), Positives = 115/219 (52%)
Query: 41 KTRRISTKTLALQQQQRQHDVPLSSAPQTPATAMRGAEADAMGLLLKERIVFLGNNIDDF 100
K R S L + + V P + +A D L K RIV+LG ++
Sbjct: 66 KLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLGMSLVPS 125
Query: 101 VADAIISQLLLLDAQDPTKDIRLFVNSPG--------GSLSATMAIYDVVQLVRADVSTV 152
V + I+++ L L +D K I L++NS G G + AIYDV+ V+ + T+
Sbjct: 126 VTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVKPPIFTL 185
Query: 153 ALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFT 212
+G + A+L+L G KG R A+P++ +MI QP+ GQ DVEI +EI H K
Sbjct: 186 CVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQATDVEIARKEIKHIKTEMV 245
Query: 213 RIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 251
++ S G+S EQ++ D+ R +Y SP EAVEYGIID V+
Sbjct: 246 KLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVV 284
>UNIPROTKB|P0C312 [details] [associations]
symbol:clpP "ATP-dependent Clp protease proteolytic
subunit" species:4530 "Oryza sativa" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215
PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574
GO:GO:0005524 GO:GO:0009536 GO:GO:0006508 GO:GO:0004252
EMBL:AY522331 GO:GO:0009535 HOGENOM:HOG000285833 InterPro:IPR023562
PANTHER:PTHR10381 GO:GO:0009840 ProteinModelPortal:P0C312
Gramene:P0C312 Genevestigator:P0C312 Uniprot:P0C312
Length = 216
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 78/215 (36%), Positives = 116/215 (53%)
Query: 61 VPLSSAPQTPATAMRGAEA---DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDP 117
+P+ P+ P EA D ++ +ER +FLG I V + I ++ L +D
Sbjct: 1 MPIG-VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDG 59
Query: 118 TKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMP 177
DI LF+NSPGG L + MAI+D +Q V D+ T+ LG++AS AS IL GG KR A P
Sbjct: 60 ISDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFP 119
Query: 178 NTRVMIHQPMGGA-SGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM 236
+ R+M+HQP + + ++ E+ ++ TR+ + TG+ F V +D++RD +M
Sbjct: 120 HARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFM 179
Query: 237 SPIEAVEYGIIDGVIDR--DSIIPLVPV--PEKVK 267
S EA YG++D V D D PV PE K
Sbjct: 180 SADEAKAYGLVDIVGDEMLDEHCDTDPVWFPEMFK 214
>UNIPROTKB|P0C313 [details] [associations]
symbol:clpP "ATP-dependent Clp protease proteolytic
subunit" species:39946 "Oryza sativa Indica Group" [GO:0009536
"plastid" evidence=IC] HAMAP:MF_00444 InterPro:IPR001907
InterPro:IPR018215 PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382
Pfam:PF00574 GO:GO:0005524 GO:GO:0009536 GO:GO:0006508
GO:GO:0004252 EMBL:AY522329 GO:GO:0009535 InterPro:IPR023562
PANTHER:PTHR10381 GO:GO:0009840 ProtClustDB:CHL00028
RefSeq:YP_654230.1 ProteinModelPortal:P0C313 GeneID:4126873
Gramene:P0C313 Uniprot:P0C313
Length = 216
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 78/215 (36%), Positives = 116/215 (53%)
Query: 61 VPLSSAPQTPATAMRGAEA---DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDP 117
+P+ P+ P EA D ++ +ER +FLG I V + I ++ L +D
Sbjct: 1 MPIG-VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDG 59
Query: 118 TKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMP 177
DI LF+NSPGG L + MAI+D +Q V D+ T+ LG++AS AS IL GG KR A P
Sbjct: 60 ISDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFP 119
Query: 178 NTRVMIHQPMGGA-SGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM 236
+ R+M+HQP + + ++ E+ ++ TR+ + TG+ F V +D++RD +M
Sbjct: 120 HARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFM 179
Query: 237 SPIEAVEYGIIDGVIDR--DSIIPLVPV--PEKVK 267
S EA YG++D V D D PV PE K
Sbjct: 180 SADEAKAYGLVDIVGDEMLDEHCDTDPVWFPEMFK 214
>UNIPROTKB|P0C314 [details] [associations]
symbol:clpP "ATP-dependent Clp protease proteolytic
subunit" species:39947 "Oryza sativa Japonica Group" [GO:0009536
"plastid" evidence=IC] HAMAP:MF_00444 InterPro:IPR001907
InterPro:IPR018215 PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382
Pfam:PF00574 GO:GO:0005524 GO:GO:0009536 GO:GO:0006508
GO:GO:0004252 EMBL:X15901 EMBL:AY522330 GenomeReviews:AY522330_GR
GO:GO:0009535 eggNOG:COG0740 KO:K01358 InterPro:IPR023562
PANTHER:PTHR10381 GO:GO:0009840 MEROPS:S14.002 ProtClustDB:CHL00028
PIR:JQ0251 RefSeq:NP_039410.1 ProteinModelPortal:P0C314
STRING:P0C314 GeneID:3131474 KEGG:osa:3131474 Gramene:P0C314
Uniprot:P0C314
Length = 216
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 78/215 (36%), Positives = 116/215 (53%)
Query: 61 VPLSSAPQTPATAMRGAEA---DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDP 117
+P+ P+ P EA D ++ +ER +FLG I V + I ++ L +D
Sbjct: 1 MPIG-VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDG 59
Query: 118 TKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMP 177
DI LF+NSPGG L + MAI+D +Q V D+ T+ LG++AS AS IL GG KR A P
Sbjct: 60 ISDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFP 119
Query: 178 NTRVMIHQPMGGA-SGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM 236
+ R+M+HQP + + ++ E+ ++ TR+ + TG+ F V +D++RD +M
Sbjct: 120 HARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFM 179
Query: 237 SPIEAVEYGIIDGVIDR--DSIIPLVPV--PEKVK 267
S EA YG++D V D D PV PE K
Sbjct: 180 SADEAKAYGLVDIVGDEMLDEHCDTDPVWFPEMFK 214
>UNIPROTKB|Q6ENE9 [details] [associations]
symbol:clpP "ATP-dependent Clp protease proteolytic
subunit" species:4536 "Oryza nivara" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215
PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574
GO:GO:0005524 GO:GO:0009536 GO:GO:0009570 GO:GO:0006508
GO:GO:0004252 EMBL:AP006728 InterPro:IPR023562 PANTHER:PTHR10381
RefSeq:YP_052774.1 ProteinModelPortal:Q6ENE9 MEROPS:S14.002
GeneID:2885922 Gramene:Q6ENE9 ProtClustDB:CHL00028 Uniprot:Q6ENE9
Length = 216
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 78/215 (36%), Positives = 116/215 (53%)
Query: 61 VPLSSAPQTPATAMRGAEA---DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDP 117
+P+ P+ P EA D ++ +ER +FLG I V + I ++ L +D
Sbjct: 1 MPIG-VPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDG 59
Query: 118 TKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMP 177
DI LF+NSPGG L + MAI+D +Q V D+ T+ LG++AS AS IL GG KR A P
Sbjct: 60 ISDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFP 119
Query: 178 NTRVMIHQPMGGA-SGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYM 236
+ R+M+HQP + + ++ E+ ++ TR+ + TG+ F V +D++RD +M
Sbjct: 120 HARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFM 179
Query: 237 SPIEAVEYGIIDGVIDR--DSIIPLVPV--PEKVK 267
S EA YG++D V D D PV PE K
Sbjct: 180 SADEAKAYGLVDIVGDEMLDEHCDTDPVWFPEMFK 214
>UNIPROTKB|Q6E6T0 [details] [associations]
symbol:Q6E6T0 "ATP-dependent Clp protease proteolytic
subunit" species:39947 "Oryza sativa Japonica Group" [GO:0009536
"plastid" evidence=IC] HAMAP:MF_00444 InterPro:IPR001907
InterPro:IPR018215 PRINTS:PR00127 PROSITE:PS00382 Pfam:PF00574
GO:GO:0009536 GO:GO:0006508 GO:GO:0004252 GO:GO:0009535
HOGENOM:HOG000285833 InterPro:IPR023562 PANTHER:PTHR10381
GO:GO:0009840 EMBL:AY538587 ProteinModelPortal:Q6E6T0 STRING:Q6E6T0
Gramene:Q6E6T0 Uniprot:Q6E6T0
Length = 209
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 72/193 (37%), Positives = 107/193 (55%)
Query: 80 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIY 139
D ++ +ER +FLG I V + I ++ L +D DI LF+NSPGG L + MAI+
Sbjct: 15 DLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIF 74
Query: 140 DVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGA-SGQVLDVE 198
D +Q V D+ + LG++AS AS IL GG KR A P+ R+M+HQP + +
Sbjct: 75 DTMQTVTPDIYAICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFL 134
Query: 199 IQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR--DSI 256
++ E+ ++ TR+ + TG+ F V +D++RD +MS EA YG++D V D D
Sbjct: 135 LEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDEMLDEH 194
Query: 257 IPLVPV--PEKVK 267
PV PE K
Sbjct: 195 CDTDPVWFPEMFK 207
>TAIR|locus:2031070 [details] [associations]
symbol:CLPR1 "CLP protease proteolytic subunit 1"
species:3702 "Arabidopsis thaliana" [GO:0004252 "serine-type
endopeptidase activity" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009840 "chloroplastic
endopeptidase Clp complex" evidence=IDA] [GO:0009532 "plastid
stroma" evidence=IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] InterPro:IPR001907 PRINTS:PR00127 Pfam:PF00574
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006508 GO:GO:0009941
GO:GO:0004252 GO:GO:0009534 EMBL:AC015445 eggNOG:COG0740
InterPro:IPR023562 PANTHER:PTHR10381 GO:GO:0009840 EMBL:AB022330
EMBL:AY045677 EMBL:BT000572 IPI:IPI00529610 PIR:T52451
RefSeq:NP_564560.1 UniGene:At.23793 UniGene:At.75198 PDB:1R96
PDBsum:1R96 ProteinModelPortal:Q9XJ35 SMR:Q9XJ35 IntAct:Q9XJ35
STRING:Q9XJ35 PaxDb:Q9XJ35 PRIDE:Q9XJ35 EnsemblPlants:AT1G49970.1
GeneID:841420 KEGG:ath:AT1G49970 GeneFarm:810 TAIR:At1g49970
HOGENOM:HOG000006365 InParanoid:Q9XJ35 OMA:AIDMWIK PhylomeDB:Q9XJ35
ProtClustDB:CLSN2688619 Genevestigator:Q9XJ35 Uniprot:Q9XJ35
Length = 387
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 66/192 (34%), Positives = 109/192 (56%)
Query: 75 RGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPG----- 129
R A D LLL RI +LG I V + +++Q + LD +PTK I L++NSPG
Sbjct: 166 RTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEK 225
Query: 130 ----GSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
GS + AI D + ++DV T+ GM+ A+++L G KG R P++ ++
Sbjct: 226 METVGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYL 285
Query: 186 P-MGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEY 244
P + +SG +D+ I+A+E+ N + + +++ TG+S EQ+ +DI R +Y+ A++Y
Sbjct: 286 PKVNRSSGAAIDMWIKAKELDANTEYYIELLAKGTGKSKEQINEDIKRPKYLQAQAAIDY 345
Query: 245 GIIDGVID-RDS 255
GI D + D +DS
Sbjct: 346 GIADKIADSQDS 357
>GENEDB_PFALCIPARUM|PF14_0348 [details] [associations]
symbol:PF14_0348 "ATP-dependent Clp protease
proteolytic subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0020011 "apicoplast" evidence=ISS] InterPro:IPR001907
PRINTS:PR00127 Pfam:PF00574 GO:GO:0006508 GO:GO:0004252
EMBL:AE014187 HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562
PANTHER:PTHR10381 GO:GO:0020011 RefSeq:XP_001348522.1 PDBsum:4GM2
PDBsum:4HNK HSSP:P19245 ProteinModelPortal:Q8IL98
EnsemblProtists:PF14_0348:mRNA GeneID:811930 KEGG:pfa:PF14_0348
EuPathDB:PlasmoDB:PF3D7_1436800 OMA:GDSAVMR ProtClustDB:CLSZ2847446
Uniprot:Q8IL98
Length = 244
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 57/182 (31%), Positives = 100/182 (54%)
Query: 84 LLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPG----------GSLS 133
LLL +RI+FL + I +++ IISQLL L+ + K I L++NS G ++
Sbjct: 63 LLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGIT 122
Query: 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGAS-G 192
++I DV+ + +DV T LG + A ++ G KG RF++ N+ ++Q
Sbjct: 123 DVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFN 182
Query: 193 QVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 252
Q ++EIQ +EIM+ K IIS T + + ++RD+Y + EAV++ +ID +++
Sbjct: 183 QATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILE 242
Query: 253 RD 254
++
Sbjct: 243 KE 244
>UNIPROTKB|Q8IL98 [details] [associations]
symbol:PF14_0348 "ATP-dependent Clp protease proteolytic
subunit" species:36329 "Plasmodium falciparum 3D7" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR001907 PRINTS:PR00127
Pfam:PF00574 GO:GO:0006508 GO:GO:0004252 EMBL:AE014187
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
GO:GO:0020011 RefSeq:XP_001348522.1 PDBsum:4GM2 PDBsum:4HNK
HSSP:P19245 ProteinModelPortal:Q8IL98
EnsemblProtists:PF14_0348:mRNA GeneID:811930 KEGG:pfa:PF14_0348
EuPathDB:PlasmoDB:PF3D7_1436800 OMA:GDSAVMR ProtClustDB:CLSZ2847446
Uniprot:Q8IL98
Length = 244
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 57/182 (31%), Positives = 100/182 (54%)
Query: 84 LLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPG----------GSLS 133
LLL +RI+FL + I +++ IISQLL L+ + K I L++NS G ++
Sbjct: 63 LLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGIT 122
Query: 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGAS-G 192
++I DV+ + +DV T LG + A ++ G KG RF++ N+ ++Q
Sbjct: 123 DVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFN 182
Query: 193 QVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 252
Q ++EIQ +EIM+ K IIS T + + ++RD+Y + EAV++ +ID +++
Sbjct: 183 QATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILE 242
Query: 253 RD 254
++
Sbjct: 243 KE 244
>TIGR_CMR|DET_1086 [details] [associations]
symbol:DET_1086 "ATP-dependent Clp protease, proteolytic
subunit ClpP, putative" species:243164 "Dehalococcoides ethenogenes
195" [GO:0009368 "endopeptidase Clp complex" evidence=ISS]
InterPro:IPR001907 PRINTS:PR00127 Pfam:PF00574 GO:GO:0006508
GO:GO:0004252 EMBL:CP000027 GenomeReviews:CP000027_GR
eggNOG:COG0740 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
RefSeq:YP_181801.1 ProteinModelPortal:Q3Z7J8 STRING:Q3Z7J8
GeneID:3229625 KEGG:det:DET1086 PATRIC:21609213
HOGENOM:HOG000232515 OMA:GDITVWI ProtClustDB:CLSK925866
BioCyc:DETH243164:GJNF-1087-MONOMER Uniprot:Q3Z7J8
Length = 242
Score = 159 (61.0 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 49/181 (27%), Positives = 90/181 (49%)
Query: 74 MRGAEADAMGLLLKERIVFLGNNIDD--FVADAIISQLLLLDAQDPTKDIRLFVNSPGGS 131
+R E D+ G +R ++L I D + D + QL + +I L++NSPGG
Sbjct: 9 VRNEEPDSFG---SDRTLYLDGEISDETWFGDEVTPQLFKDELSSGDGNITLWINSPGGD 65
Query: 132 LSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGAS 191
+ A IY+++ DV+ ++AS AS+I GTK P +MIH P A
Sbjct: 66 VFAAAQIYNMLMDYPHDVTVKIDALAASAASVIAMAGTKV--CMSPVAMMMIHNPATIAI 123
Query: 192 GQVLDVEIQAREIMHN-KDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGV 250
G +++ +A ++++ K++ +G S ++ + +D + +M+ EAV+ G D +
Sbjct: 124 GDTEEMQ-KAIDMLNEVKESIMNAYEIKSGLSRHKISQLMDAETWMNAKEAVKLGFADEI 182
Query: 251 I 251
+
Sbjct: 183 L 183
>TIGR_CMR|BA_4092 [details] [associations]
symbol:BA_4092 "prophage LambdaBa02, Clp protease family
protein" species:198094 "Bacillus anthracis str. Ames" [GO:0006508
"proteolysis" evidence=ISS] InterPro:IPR001907 PRINTS:PR00127
Pfam:PF00574 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006508 GO:GO:0004252
InterPro:IPR023562 PANTHER:PTHR10381 HOGENOM:HOG000232515
RefSeq:NP_846331.1 RefSeq:YP_020737.2 RefSeq:YP_030054.1
ProteinModelPortal:Q81W90 DNASU:1086588
EnsemblBacteria:EBBACT00000008678 EnsemblBacteria:EBBACT00000018702
EnsemblBacteria:EBBACT00000023556 GeneID:1086588 GeneID:2814699
GeneID:2851717 KEGG:ban:BA_4092 KEGG:bar:GBAA_4092 KEGG:bat:BAS3804
OMA:TINLHIN ProtClustDB:CLSK644195
BioCyc:BANT260799:GJAJ-3861-MONOMER
BioCyc:BANT261594:GJ7F-3979-MONOMER Uniprot:Q81W90
Length = 251
Score = 136 (52.9 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 43/138 (31%), Positives = 69/138 (50%)
Query: 116 DPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFA 175
D K I L++NSPGGS+ TMAI ++Q A + + G+ AS AS++ K +A
Sbjct: 54 DDIKTINLYINSPGGSVFETMAIIAMLQRHHAKIISYIDGIGASCASVLPMISDKIIMYA 113
Query: 176 MPNTRVMIHQPMGGASGQVLDVEIQAREIMH-NKDNFTRIISGFTGRSFEQVQKDI-DRD 233
N+ +MIH ASG + A +I N+ ++ + E K + D +
Sbjct: 114 --NSMMMIHNAWTYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAE 171
Query: 234 RYMSPIEAVEYGIIDGVI 251
++S EA+ YG+ D +I
Sbjct: 172 TWLSAEEAMGYGLCDEII 189
>TIGR_CMR|SO_2964 [details] [associations]
symbol:SO_2964 "ClpP protease family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0006508
"proteolysis" evidence=ISS] InterPro:IPR001907 InterPro:IPR018215
PRINTS:PR00127 PROSITE:PS00381 Pfam:PF00574 GO:GO:0006508
GO:GO:0004252 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR023562 PANTHER:PTHR10381 RefSeq:NP_718533.1
ProteinModelPortal:Q8ED07 GeneID:1170652 KEGG:son:SO_2964
PATRIC:23525568 HOGENOM:HOG000138775 OMA:NSPGGDF
ProtClustDB:CLSK865009 Uniprot:Q8ED07
Length = 284
Score = 132 (51.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 39/142 (27%), Positives = 69/142 (48%)
Query: 119 KDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPN 178
KD+ +++NSPGG + +AIY+ ++ + V+T LG++AS AS+I G RF +
Sbjct: 70 KDVTVYINSPGGDMFEGIAIYNRLREHKGKVTTKVLGLAASAASVIYMAGEDDARFVASS 129
Query: 179 TRVMIHQPMGGASGQVLDVEIQAREIMHNKDNF-TRIISGFT---GRSFEQVQKDIDRDR 234
+MIH A G R I + + F ++ + G+S + + +D +
Sbjct: 130 AFLMIHNCWVFAIGN----RHALRNIADDMEEFDAAMVDLYVEGCGQSEKVIATMMDEET 185
Query: 235 YMSPIEAVEYGIIDGVIDRDSI 256
++ +AVE G + D I
Sbjct: 186 FIRGKKAVELGFAADTLSADEI 207
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 293 257 0.00086 114 3 11 22 0.45 33
32 0.48 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 47
No. of states in DFA: 531 (57 KB)
Total size of DFA: 145 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.68u 0.22s 22.90t Elapsed: 00:00:01
Total cpu time: 22.69u 0.22s 22.91t Elapsed: 00:00:01
Start: Sat May 11 08:19:24 2013 End: Sat May 11 08:19:25 2013