BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041849
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94B60|CLPP4_ARATH ATP-dependent Clp protease proteolytic subunit 4, chloroplastic
OS=Arabidopsis thaliana GN=CLPP4 PE=1 SV=1
Length = 292
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/225 (79%), Positives = 207/225 (92%)
Query: 68 QTPATAMRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNS 127
QT +A+RGAE+D MGLLL+ERIVFLG++IDDFVADAI+SQLLLLDA+DP KDI+LF+NS
Sbjct: 67 QTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINS 126
Query: 128 PGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPM 187
PGGSLSATMAIYDVVQLVRADVST+ALG++ASTAS+ILG GTKGKRFAMPNTR+MIHQP+
Sbjct: 127 PGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPL 186
Query: 188 GGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGII 247
GGASGQ +DVEIQA+E+MHNK+N T II+G T RSFEQV KDIDRDRYMSPIEAVEYG+I
Sbjct: 187 GGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLI 246
Query: 248 DGVIDRDSIIPLVPVPEKVKPGFDYLEVRKDPRKFLTPDVPDDEI 292
DGVID DSIIPL PVP++VKP +Y E+ KDP KFLTP++PDDEI
Sbjct: 247 DGVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIPDDEI 291
>sp|Q7V9L6|CLPP3_PROMA ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus
marinus (strain SARG / CCMP1375 / SS120) GN=clpP3 PE=3
SV=1
Length = 216
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 153/212 (72%), Gaps = 4/212 (1%)
Query: 45 ISTKTLALQQQQRQHDVPLSS---APQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDF 100
I+TK + Q + + D+P S P + RG A D LL+ERI+FLG +++D
Sbjct: 2 INTKCIHPVQNKWKGDLPCSGPGVLPTVIEQSGRGERAFDIYSRLLRERIIFLGTDVNDQ 61
Query: 101 VADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSAST 160
+ADA+++Q+L L+A+DP KDI+L++NSPGGS++A +AIYD +Q V D+ T+ G++AS
Sbjct: 62 IADALVAQMLFLEAEDPEKDIQLYINSPGGSVTAGLAIYDTMQQVNPDIVTMCYGLAASM 121
Query: 161 ASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTG 220
+ +L GG+KGKR A+PN+R+MIHQP+GGA GQ +++EIQA+EI+ K+ +++ TG
Sbjct: 122 GAFLLAGGSKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKETLNNLLAEHTG 181
Query: 221 RSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 252
+S E++ +D DRD ++SP EAVEYG+ID V++
Sbjct: 182 QSLEKISEDTDRDHFLSPQEAVEYGLIDKVVN 213
>sp|Q2RL31|CLPP_MOOTA ATP-dependent Clp protease proteolytic subunit OS=Moorella
thermoacetica (strain ATCC 39073) GN=clpP PE=3 SV=1
Length = 199
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/188 (52%), Positives = 135/188 (71%), Gaps = 1/188 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P RG A D LLK+RI+FLG+ IDD VA+ +I+Q+L L+A+DP KDI L++
Sbjct: 6 PMVVEQTSRGERAYDIYSRLLKDRIIFLGSAIDDHVANLVIAQMLFLEAEDPDKDIHLYI 65
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS+SA MAI+D +Q +R DVST+ +G++AS + +L G KGKRFA+PN+ +MIHQ
Sbjct: 66 NSPGGSISAGMAIFDTMQYIRPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSEIMIHQ 125
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
PMGG GQ +D+EI A+ I+ +DN RI+S TG+ EQ+ +D DRD +M+ EA EYG
Sbjct: 126 PMGGTQGQAVDIEIHAKRILAIRDNLNRILSEITGKPLEQIARDTDRDHFMTAREAREYG 185
Query: 246 IIDGVIDR 253
+ID VI +
Sbjct: 186 LIDEVITK 193
>sp|Q5N1P6|CLPP3_SYNP6 ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
GN=clpP3 PE=3 SV=1
Length = 240
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 155/233 (66%), Gaps = 11/233 (4%)
Query: 24 FSLSKSLPLSFKPISSVKTRRISTKTLALQQQQRQHDVPLSSA--PQTPATAMRGAEA-D 80
FS SLP + +RR++ + QQ + + S A P + RG A D
Sbjct: 2 FSSHASLP--------IHSRRLAAGLDSRWQQPQIQAIAGSQAIVPTVVEQSGRGERAFD 53
Query: 81 AMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYD 140
LL+ERIVFLG +DD VAD+I++QLL L+A+DP KDI+L++NSPGGS++A MAIYD
Sbjct: 54 IYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYD 113
Query: 141 VVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQ 200
+Q V DV+T+ G++AS + +L GG +GKR A+P+ R+MIHQP+GGA GQ +D+EIQ
Sbjct: 114 TMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEIQ 173
Query: 201 AREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 253
AREI+++K +++ TG+ E+++ D DRD +MSP EA YG+ID V+ R
Sbjct: 174 AREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVLTR 226
>sp|O34125|CLPP2_SYNE7 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
elongatus (strain PCC 7942) GN=clpP2 PE=3 SV=1
Length = 240
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 155/233 (66%), Gaps = 11/233 (4%)
Query: 24 FSLSKSLPLSFKPISSVKTRRISTKTLALQQQQRQHDVPLSSA--PQTPATAMRGAEA-D 80
FS SLP + +RR++ + QQ + + S A P + RG A D
Sbjct: 2 FSSHASLP--------IHSRRLAAGLDSRWQQPQIQAIAGSQAIVPTVVEQSGRGERAFD 53
Query: 81 AMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYD 140
LL+ERIVFLG +DD VAD+I++QLL L+A+DP KDI+L++NSPGGS++A MAIYD
Sbjct: 54 IYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYD 113
Query: 141 VVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQ 200
+Q V DV+T+ G++AS + +L GG +GKR A+P+ R+MIHQP+GGA GQ +D+EIQ
Sbjct: 114 TMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEIQ 173
Query: 201 AREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 253
AREI+++K +++ TG+ E+++ D DRD +MSP EA YG+ID V+ R
Sbjct: 174 AREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVLTR 226
>sp|Q9SXJ6|CLPP3_ARATH ATP-dependent Clp protease proteolytic subunit 3, chloroplastic
OS=Arabidopsis thaliana GN=CLPP3 PE=1 SV=1
Length = 309
Score = 209 bits (533), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/253 (43%), Positives = 161/253 (63%), Gaps = 6/253 (2%)
Query: 4 LSVSSTSTSHLHFSLYKPPNFSL-SKSLPLSFKPI---SSVKTRRISTKTLALQQQQRQH 59
L+ SSTS + K NF + + +P + KP SS+ + +TL+
Sbjct: 7 LASSSTSNPICLLNPGKNLNFPIRNHRIPKTSKPFCVRSSMSLSKPPRQTLSSNWDVSSF 66
Query: 60 DVPLSSAPQTPATAMRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTK 119
+ S Q+P+ E D +LL++RIVFLG+ +DD AD +ISQLLLLDA+D +
Sbjct: 67 SI--DSVAQSPSRLPSFEELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSER 124
Query: 120 DIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNT 179
DI LF+NSPGGS++A M IYD ++ +ADVSTV LG++AS + +L G+KGKR+ MPN+
Sbjct: 125 DITLFINSPGGSITAGMGIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNS 184
Query: 180 RVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPI 239
+VMIHQP+G A G+ ++ I+ RE+M++K +I S TG+ +++ D DRD +++P
Sbjct: 185 KVMIHQPLGTAGGKATEMSIRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPW 244
Query: 240 EAVEYGIIDGVID 252
EA EYG+ID VID
Sbjct: 245 EAKEYGLIDAVID 257
>sp|Q3ANI8|CLPP1_SYNSC ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus
sp. (strain CC9605) GN=clpP1 PE=3 SV=2
Length = 207
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 90/168 (53%), Positives = 133/168 (79%)
Query: 85 LLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQL 144
LL+ERI+FLG +DD VADA+++Q+L L+A+DP KDI++++NSPGGS++A +AIYD +Q
Sbjct: 29 LLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYINSPGGSVTAGLAIYDTMQQ 88
Query: 145 VRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREI 204
V DV T+ G++AS + +L GGTKGKR A+PN R+MIHQP+GGA GQ +D+EIQA+EI
Sbjct: 89 VAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKEI 148
Query: 205 MHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 252
++ K+ +++ TG+ +++ +D DRD ++SP EAVEYG+ID V+D
Sbjct: 149 LYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVVD 196
>sp|Q3B0U1|CLPP2_SYNS9 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain CC9902) GN=clpP2 PE=3 SV=1
Length = 207
Score = 208 bits (529), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 91/168 (54%), Positives = 132/168 (78%)
Query: 85 LLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQL 144
LL+ERI+FLG +DD VADA+++Q+L L+A+DP KDI+++VNSPGGS++A +AIYD +Q
Sbjct: 29 LLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYVNSPGGSVTAGLAIYDTMQQ 88
Query: 145 VRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREI 204
V DV T+ G++AS + +L GGTKGKR A+PN R+MIHQP+GGA GQ +D+EIQA+EI
Sbjct: 89 VAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKEI 148
Query: 205 MHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 252
+ K+ +++ TG+ +++ +D DRD ++SP EAVEYG+ID V+D
Sbjct: 149 LFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVVD 196
>sp|Q46ID4|CLPP3_PROMT ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus
marinus (strain NATL2A) GN=clpP3 PE=3 SV=1
Length = 194
Score = 207 bits (527), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 89/167 (53%), Positives = 134/167 (80%)
Query: 85 LLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQL 144
LL+ERI+FLG +++D VADA+++Q+L L+A DP KDI+L+VNSPGGS++A +AIYD +Q
Sbjct: 22 LLRERIIFLGTDVNDQVADALVAQMLFLEADDPEKDIQLYVNSPGGSVTAGLAIYDTMQQ 81
Query: 145 VRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREI 204
V DV T+ G++AS + +L GGTKGKR A+PN+R+MIHQP+GGA GQ +++EIQA+EI
Sbjct: 82 VSPDVITICYGLAASMGAFLLSGGTKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEI 141
Query: 205 MHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 251
++ K+ +++ TG++ +++ +D DRD ++SP EAVEYG+ID V+
Sbjct: 142 LYLKETLNSLLAEHTGQNIQKISEDTDRDHFLSPQEAVEYGLIDKVV 188
>sp|B1L812|CLPP_THESQ ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp.
(strain RQ2) GN=clpP PE=3 SV=1
Length = 203
Score = 207 bits (527), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 131/172 (76%)
Query: 80 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIY 139
D LLK+RIVFLG+ IDD+VA+ +I+QLL L+A+DP KD+ L++NSPGGS++A +AIY
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 87
Query: 140 DVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEI 199
D +Q ++ DVST+ +G +AS A+++L G KGKR+A+PN R+MIHQP+GGA G DVEI
Sbjct: 88 DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEI 147
Query: 200 QAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 251
RE++ KD RI+S TG+ E+++KD DRD +MS EA EYGI+D V+
Sbjct: 148 ITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199
>sp|A5IJ91|CLPP_THEP1 ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=clpP PE=3 SV=1
Length = 203
Score = 207 bits (527), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 131/172 (76%)
Query: 80 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIY 139
D LLK+RIVFLG+ IDD+VA+ +I+QLL L+A+DP KD+ L++NSPGGS++A +AIY
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 87
Query: 140 DVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEI 199
D +Q ++ DVST+ +G +AS A+++L G KGKR+A+PN R+MIHQP+GGA G DVEI
Sbjct: 88 DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEI 147
Query: 200 QAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 251
RE++ KD RI+S TG+ E+++KD DRD +MS EA EYGI+D V+
Sbjct: 148 ITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199
>sp|Q9WZF9|CLPP_THEMA ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=clpP PE=3 SV=1
Length = 203
Score = 207 bits (527), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 131/172 (76%)
Query: 80 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIY 139
D LLK+RIVFLG+ IDD+VA+ +I+QLL L+A+DP KD+ L++NSPGGS++A +AIY
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 87
Query: 140 DVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEI 199
D +Q ++ DVST+ +G +AS A+++L G KGKR+A+PN R+MIHQP+GGA G DVEI
Sbjct: 88 DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEI 147
Query: 200 QAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 251
RE++ KD RI+S TG+ E+++KD DRD +MS EA EYGI+D V+
Sbjct: 148 ITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199
>sp|Q0AWF0|CLPP_SYNWW ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas
wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3
SV=1
Length = 200
Score = 207 bits (527), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 129/172 (75%)
Query: 80 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIY 139
D LLK+RI+FLG+ IDD VA+ +I+QLL L+A+DP KDI L++NSPGGS++A MAIY
Sbjct: 20 DIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPGGSITAGMAIY 79
Query: 140 DVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEI 199
D +Q +R DVST+ +G++AS + +L G KGKR+A+PN +MIHQP GG GQ D+EI
Sbjct: 80 DTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMIHQPAGGTQGQATDIEI 139
Query: 200 QAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 251
AR IM+ K++ +I++ TG+ E++QKD DRD +M+ EA EYGIID VI
Sbjct: 140 HARRIMNMKESLNKILAERTGQPLERIQKDTDRDYFMTAQEAKEYGIIDEVI 191
>sp|Q59993|CLPP2_SYNY3 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=clpP2 PE=3 SV=1
Length = 226
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/184 (52%), Positives = 137/184 (74%), Gaps = 1/184 (0%)
Query: 80 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIY 139
D LL+ERI+FLG +DD VAD+I++QLL LDA+DP KDI+L++NSPGGS+ A +AIY
Sbjct: 39 DIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAIY 98
Query: 140 DVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEI 199
D +Q +R DV T+ G++AS + +L GG KGKR A+P++R+MIHQP+GGA GQ +++EI
Sbjct: 99 DTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMALPSSRIMIHQPLGGAQGQAVEIEI 158
Query: 200 QAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSII-P 258
QAREI++ KD ++ TG+ E++Q+D +RD +MS EA EYG+ID VI R ++ P
Sbjct: 159 QAREILYIKDRLNTMLVEHTGQPMEKLQEDTERDFFMSAEEAKEYGLIDQVISRPNLPDP 218
Query: 259 LVPV 262
PV
Sbjct: 219 TTPV 222
>sp|Q8DLI2|CLPP1_THEEB ATP-dependent Clp protease proteolytic subunit 1
OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP1
PE=3 SV=1
Length = 229
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 149/225 (66%), Gaps = 23/225 (10%)
Query: 56 QRQHDVPLSSAPQTPATAM----------------RGAEA-DAMGLLLKERIVFLGNN-- 96
Q ++D PLS+ ++PA + RG A D LL+ERI+FLG
Sbjct: 3 QSRYDHPLSAILRSPALNLPPTHANIVPMVVEQSGRGERAFDIYSRLLRERIIFLGGGAG 62
Query: 97 ----IDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTV 152
IDD VAD+I++QLL LDA+DP KDI L++NSPGGS++A MAIYD ++ +R DV T+
Sbjct: 63 DRRGIDDAVADSIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMAIYDTMKHIRPDVCTL 122
Query: 153 ALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFT 212
G++AS + +L GGT GKR A+PN R+MIHQP+GGA GQ +D+EIQAREI+++K
Sbjct: 123 CFGLAASMGAFLLSGGTPGKRMALPNARIMIHQPLGGAQGQAVDIEIQAREILYHKRKLN 182
Query: 213 RIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSII 257
++S TG+ E+++ D +RD +MS EA YG+ID V+ R +++
Sbjct: 183 ELLSQHTGQPIERIEADTERDFFMSAEEAKAYGLIDQVVTRQTLL 227
>sp|Q7UZK7|CLPP3_PROMP ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4)
GN=clpP3 PE=3 SV=1
Length = 215
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 95/199 (47%), Positives = 141/199 (70%), Gaps = 1/199 (0%)
Query: 57 RQHDVPLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQ 115
R D S+ P + RG A D LL+ERI+FLG I+D V+D++++QLL L+A+
Sbjct: 16 RDIDKSRSAVPTVVEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAE 75
Query: 116 DPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFA 175
DP KDI++++NSPGGS++A +AIYD +Q + DV T+ G++AS + +L GG KGKR A
Sbjct: 76 DPHKDIQIYINSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLA 135
Query: 176 MPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRY 235
+PN+R+MIHQP+GGA GQ +++EIQA+EI+ K +++ T +S E++ +D +RD +
Sbjct: 136 LPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAKHTNQSLEKINEDTERDYF 195
Query: 236 MSPIEAVEYGIIDGVIDRD 254
+SP EAVEYG+ID VI D
Sbjct: 196 LSPEEAVEYGLIDKVIKND 214
>sp|Q7UA36|CLPP1_SYNPX ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus
sp. (strain WH8102) GN=clpP1 PE=3 SV=1
Length = 224
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 146/203 (71%), Gaps = 4/203 (1%)
Query: 54 QQQRQHDVPLSS---APQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQL 109
Q + + ++P+S+ P + RG A D LL+ERI+FLG +DD VADA+++Q+
Sbjct: 11 QNRWRAEMPISAPGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQM 70
Query: 110 LLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGT 169
L L+A+DP KDI++++NSPGGS++A +AIYD +Q V DV T+ G++AS + +L GG
Sbjct: 71 LFLEAEDPEKDIQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGC 130
Query: 170 KGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKD 229
KGKR A+PN R+MIHQP+GGA GQ +D+EIQA+EI+ K+ +++ TG+ +++ +D
Sbjct: 131 KGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLMADHTGQPLDKIAED 190
Query: 230 IDRDRYMSPIEAVEYGIIDGVID 252
DRD ++SP EAV+YG+ID V+D
Sbjct: 191 TDRDYFLSPAEAVQYGLIDRVVD 213
>sp|Q7V992|CLPP1_PROMM ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus
marinus (strain MIT 9313) GN=clpP1 PE=3 SV=1
Length = 224
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/195 (49%), Positives = 141/195 (72%), Gaps = 4/195 (2%)
Query: 62 PLSS---APQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDP 117
P+SS P + RG A D LL+ERI+FLG +DD VADA+++Q+L L+A+DP
Sbjct: 19 PVSSPGILPTVVEQSGRGERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDP 78
Query: 118 TKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMP 177
KDI++++NSPGGS++A +AIYD +Q V DV T+ G++AS + +L GGTKGKR A+P
Sbjct: 79 EKDIQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALP 138
Query: 178 NTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMS 237
N R+MIHQP+GGA GQ +D+EIQA+EI+ K+ +++ TG+ ++ +D DRD ++S
Sbjct: 139 NARIMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLNKIAEDTDRDHFLS 198
Query: 238 PIEAVEYGIIDGVID 252
P +AVEYG+ID V+D
Sbjct: 199 PAKAVEYGLIDRVVD 213
>sp|B2A158|CLPP_NATTJ ATP-dependent Clp protease proteolytic subunit OS=Natranaerobius
thermophilus (strain ATCC BAA-1301 / DSM 18059 /
JW/NM-WN-LF) GN=clpP PE=3 SV=1
Length = 197
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 131/174 (75%)
Query: 80 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIY 139
D LLK+RI+F+G I+D +A+++I+Q+L L+++DP KDI L++NSPGG + A +AIY
Sbjct: 19 DIYSRLLKDRIIFIGTGINDDIANSVIAQMLFLESEDPDKDIHLYINSPGGHVHAGLAIY 78
Query: 140 DVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEI 199
D +Q +R+DVST+ +GM+AS +++L G +GKRF +PN+R+M+HQPMGGA GQ DVEI
Sbjct: 79 DTMQYIRSDVSTICVGMAASMGAVLLAAGNEGKRFCLPNSRIMLHQPMGGAQGQAADVEI 138
Query: 200 QAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 253
AREIM K+ +I++ TG+ EQ+ KD DRD +MS EA +YG+ID V+ R
Sbjct: 139 HAREIMKTKERLNQILAHHTGQPVEQISKDTDRDFFMSSEEAQKYGVIDDVLKR 192
>sp|Q317Y6|CLPP4_PROM9 ATP-dependent Clp protease proteolytic subunit 4 OS=Prochlorococcus
marinus (strain MIT 9312) GN=clpP4 PE=3 SV=1
Length = 219
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 92/192 (47%), Positives = 140/192 (72%), Gaps = 1/192 (0%)
Query: 63 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDI 121
+ + P + RG A D LL+ERI+FLG+ I+D V+D++++QLL L+A+DP KDI
Sbjct: 28 IGAVPTVIEQSGRGERAFDIYSRLLRERIIFLGSGINDQVSDSLVAQLLFLEAEDPEKDI 87
Query: 122 RLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRV 181
++++NSPGGS++A MAIYD +Q + DV T+ G++AS + +L GG KGKR A+PN+R+
Sbjct: 88 QIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRI 147
Query: 182 MIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEA 241
MIHQP+GGA GQ +++EIQA+EI+ K +++ TG+ E++ +D +RD ++SP EA
Sbjct: 148 MIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEA 207
Query: 242 VEYGIIDGVIDR 253
VEYG+ID VI +
Sbjct: 208 VEYGLIDKVIKK 219
>sp|Q8CTE0|CLPP_STAES ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=clpP PE=3 SV=1
Length = 194
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 131/187 (70%), Gaps = 1/187 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++Q+D DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAAEAKEYG 184
Query: 246 IIDGVID 252
+ID V++
Sbjct: 185 LIDEVME 191
>sp|Q5HQW0|CLPP_STAEQ ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=clpP PE=3
SV=1
Length = 194
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 131/187 (70%), Gaps = 1/187 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++Q+D DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAAEAKEYG 184
Query: 246 IIDGVID 252
+ID V++
Sbjct: 185 LIDEVME 191
>sp|P63786|CLPP_STAAW ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain MW2) GN=clpP PE=1 SV=1
Length = 195
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++QKD DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
Query: 246 IIDGVI 251
+ID V+
Sbjct: 185 LIDEVM 190
>sp|A8Z045|CLPP_STAAT ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain USA300 / TCH1516) GN=clpP PE=3 SV=1
Length = 195
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++QKD DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
Query: 246 IIDGVI 251
+ID V+
Sbjct: 185 LIDEVM 190
>sp|Q6GB62|CLPP_STAAS ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain MSSA476) GN=clpP PE=3 SV=1
Length = 195
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++QKD DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
Query: 246 IIDGVI 251
+ID V+
Sbjct: 185 LIDEVM 190
>sp|Q6GIM3|CLPP_STAAR ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain MRSA252) GN=clpP PE=3 SV=1
Length = 195
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++QKD DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
Query: 246 IIDGVI 251
+ID V+
Sbjct: 185 LIDEVM 190
>sp|P99089|CLPP_STAAN ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain N315) GN=clpP PE=1 SV=1
Length = 195
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++QKD DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
Query: 246 IIDGVI 251
+ID V+
Sbjct: 185 LIDEVM 190
>sp|P63785|CLPP_STAAM ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=clpP PE=1 SV=1
Length = 195
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++QKD DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
Query: 246 IIDGVI 251
+ID V+
Sbjct: 185 LIDEVM 190
>sp|A6QF76|CLPP_STAAE ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain Newman) GN=clpP PE=3 SV=1
Length = 195
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++QKD DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
Query: 246 IIDGVI 251
+ID V+
Sbjct: 185 LIDEVM 190
>sp|Q5HHQ0|CLPP_STAAC ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain COL) GN=clpP PE=3 SV=1
Length = 195
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++QKD DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
Query: 246 IIDGVI 251
+ID V+
Sbjct: 185 LIDEVM 190
>sp|Q2YSF8|CLPP_STAAB ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain bovine RF122 / ET3-1) GN=clpP PE=3 SV=1
Length = 195
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++QKD DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
Query: 246 IIDGVI 251
+ID V+
Sbjct: 185 LIDEVM 190
>sp|A5IQX2|CLPP_STAA9 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain JH9) GN=clpP PE=3 SV=1
Length = 195
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++QKD DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
Query: 246 IIDGVI 251
+ID V+
Sbjct: 185 LIDEVM 190
>sp|Q2G036|CLPP_STAA8 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain NCTC 8325) GN=clpP PE=1 SV=1
Length = 195
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++QKD DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
Query: 246 IIDGVI 251
+ID V+
Sbjct: 185 LIDEVM 190
>sp|Q2FIM5|CLPP_STAA3 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain USA300) GN=clpP PE=3 SV=1
Length = 195
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++QKD DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
Query: 246 IIDGVI 251
+ID V+
Sbjct: 185 LIDEVM 190
>sp|A6TZP7|CLPP_STAA2 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain JH1) GN=clpP PE=3 SV=1
Length = 195
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++QKD DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
Query: 246 IIDGVI 251
+ID V+
Sbjct: 185 LIDEVM 190
>sp|A7WZR9|CLPP_STAA1 ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
aureus (strain Mu3 / ATCC 700698) GN=clpP PE=3 SV=1
Length = 195
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ RI+S TG+S E++QKD DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
Query: 246 IIDGVI 251
+ID V+
Sbjct: 185 LIDEVM 190
>sp|Q5KVD9|CLPP_GEOKA ATP-dependent Clp protease proteolytic subunit OS=Geobacillus
kaustophilus (strain HTA426) GN=clpP PE=3 SV=1
Length = 196
Score = 204 bits (518), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 96/180 (53%), Positives = 134/180 (74%), Gaps = 1/180 (0%)
Query: 75 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS 133
RG A D LLK+RIVFLG+ IDD VA++I+SQLL L A+DP KDI L++NSPGGS++
Sbjct: 13 RGERAYDIYSRLLKDRIVFLGSPIDDQVANSIVSQLLFLAAEDPDKDISLYINSPGGSIT 72
Query: 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQ 193
A +AIYD +Q ++ DVST+ +GM+AS + +L G KGKRFA+PN+ +MIHQP+GGA GQ
Sbjct: 73 AGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQ 132
Query: 194 VLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 253
++EI A+ I+ +D RI+S TG+ E +++D DRD +M+ +A+EYGIID V+ R
Sbjct: 133 ATEIEIAAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAQKAMEYGIIDRVLTR 192
>sp|Q8YQX8|CLPP2_NOSS1 ATP-dependent Clp protease proteolytic subunit 2 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=clpP2 PE=3 SV=1
Length = 232
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 130/172 (75%)
Query: 85 LLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQL 144
LL+ERI+FLG IDD VA+ I++QLL LDA+D KDI+L++NSPGGS+ A MAIYD +Q
Sbjct: 50 LLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAIYDTIQQ 109
Query: 145 VRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREI 204
+R DV T+ G++AS + +L GTKGKR ++P++R+MIHQP+GGA GQ +D+EIQAREI
Sbjct: 110 IRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREI 169
Query: 205 MHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI 256
++ K ++++ TG+ E+++ D DRD +MS EA YG+ID VI R ++
Sbjct: 170 LYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAKNYGLIDQVISRQNL 221
>sp|Q3M726|CLPP3_ANAVT ATP-dependent Clp protease proteolytic subunit 3 OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=clpP3 PE=3
SV=2
Length = 214
Score = 202 bits (513), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 130/172 (75%)
Query: 85 LLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQL 144
LL+ERI+FLG IDD VA+ I++QLL LDA+D KDI+L++NSPGGS+ A MAIYD +Q
Sbjct: 32 LLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAIYDTIQQ 91
Query: 145 VRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREI 204
+R DV T+ G++AS + +L GTKGKR ++P++R+MIHQP+GGA GQ +D+EIQAREI
Sbjct: 92 IRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREI 151
Query: 205 MHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI 256
++ K ++++ TG+ E+++ D DRD +MS EA YG+ID VI R ++
Sbjct: 152 LYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAKNYGLIDQVISRQNL 203
>sp|A4ISQ2|CLPP_GEOTN ATP-dependent Clp protease proteolytic subunit OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=clpP PE=3 SV=1
Length = 196
Score = 202 bits (513), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 95/180 (52%), Positives = 133/180 (73%), Gaps = 1/180 (0%)
Query: 75 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS 133
RG A D LLK+RI+FLG+ IDD VA++I+SQLL L A+DP KDI L++NSPGGS++
Sbjct: 13 RGERAYDIYSRLLKDRIIFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSIT 72
Query: 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQ 193
A +AIYD +Q ++ DVST+ +GM+AS + +L G KGKRFA+PN+ VMIHQP+GGA GQ
Sbjct: 73 AGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQGQ 132
Query: 194 VLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 253
++EI A+ I+ +D RI++ TG+ E +++D DRD +M+ +A EYGIID V+ R
Sbjct: 133 ATEIEIAAKRILFLRDKLNRILAENTGQPIEVIERDTDRDNFMTAQKAQEYGIIDRVLTR 192
>sp|Q4L4J5|CLPP_STAHJ ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=clpP PE=3 SV=1
Length = 195
Score = 201 bits (512), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/186 (51%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P T RG A D LLK+RI+ LG+ IDD VA++I+SQLL L AQD KDI L++
Sbjct: 5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYI 64
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A AIYD +Q ++ DV T+ +GM+AS S +L G KGKRFA+PN VMIHQ
Sbjct: 65 NSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQ 124
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA GQ ++EI A I+ ++ +I++ TG+S E++QKD DRD +++ EA EYG
Sbjct: 125 PLGGAQGQATEIEIAANHILKTREKLNKILAERTGQSIEKIQKDTDRDNFLTADEAKEYG 184
Query: 246 IIDGVI 251
+ID V+
Sbjct: 185 LIDNVM 190
>sp|A4XTZ5|CLPP_PSEMY ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas
mendocina (strain ymp) GN=clpP PE=3 SV=1
Length = 213
Score = 200 bits (509), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 89/188 (47%), Positives = 132/188 (70%), Gaps = 1/188 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P + RG A D LLKER++FL ++D++A+ I +QLL L+A++P KDI L++
Sbjct: 21 PMVIEQSARGERAYDIYSRLLKERVIFLVGQVEDYMANLICAQLLFLEAENPDKDIHLYI 80
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS++A MAIYD +Q ++ADVST +G + S + +L GG KGKRF +PN+RVMIHQ
Sbjct: 81 NSPGGSVTAGMAIYDTMQFIKADVSTTCIGQACSMGAFLLAGGAKGKRFCLPNSRVMIHQ 140
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GG GQ D+EI A+EI+ ++ +++ TG+S E +++D +RD +MS AVEYG
Sbjct: 141 PLGGFQGQASDIEIHAKEILFIRERLNELLAHHTGQSLETIERDTNRDNFMSAPRAVEYG 200
Query: 246 IIDGVIDR 253
I+D V ++
Sbjct: 201 IVDAVHEK 208
>sp|Q9K709|CLPP1_BACHD ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=clpP1 PE=3 SV=1
Length = 194
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/179 (51%), Positives = 129/179 (72%), Gaps = 1/179 (0%)
Query: 75 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS 133
RG A D LLK+RI+ LG IDD VA++I++QLL L A+DP KDI L++NSPGGS++
Sbjct: 13 RGERAYDIYSRLLKDRIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDISLYINSPGGSIT 72
Query: 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQ 193
A MAIYD +Q ++ +VST+ +GM+AS + +L G KGKRFA+PN+ VMIHQP+GG GQ
Sbjct: 73 AGMAIYDTMQYIKPNVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGTRGQ 132
Query: 194 VLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 252
D+EI R I+ ++ RI++ TG+ EQ+ KD DRD +M+ +A EYG+ID VI+
Sbjct: 133 ASDIEIHTRRILEMRETLNRILAERTGQPLEQIAKDTDRDNFMTAEKAREYGLIDKVIE 191
>sp|A8ZXB7|CLPP_DESOH ATP-dependent Clp protease proteolytic subunit OS=Desulfococcus
oleovorans (strain DSM 6200 / Hxd3) GN=clpP PE=3 SV=1
Length = 205
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 130/178 (73%), Gaps = 1/178 (0%)
Query: 75 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS 133
RG A D LLK+RIVF+G+ IDD A+ +I+QLL L+++DP KDI ++NSPGG +S
Sbjct: 13 RGERAFDIYSRLLKDRIVFIGSAIDDETANLLIAQLLFLESEDPDKDINFYINSPGGKVS 72
Query: 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQ 193
A MAIYD +Q +++D++TV +G +AS + +L G KGKRF++PN+R+MIHQPMGGA GQ
Sbjct: 73 AGMAIYDTMQYIKSDIATVCIGHAASMGAFLLAAGAKGKRFSLPNSRIMIHQPMGGAQGQ 132
Query: 194 VLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 251
D+ IQA+EI+ KD +I++ TG+ EQ+Q D DRD +MS EA YGI+D VI
Sbjct: 133 ASDIAIQAKEILRMKDILNQILAHHTGKPLEQIQVDTDRDFFMSGEEAKAYGIVDHVI 190
>sp|Q0A6A7|CLPP_ALHEH ATP-dependent Clp protease proteolytic subunit OS=Alkalilimnicola
ehrlichei (strain MLHE-1) GN=clpP PE=3 SV=1
Length = 214
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/202 (47%), Positives = 142/202 (70%), Gaps = 11/202 (5%)
Query: 66 APQTPATAM---------RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQ 115
AP+ AT + RG A D LLKER++FL ++D +A+ I++QLL L+++
Sbjct: 10 APEIEATGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDHMANLIVAQLLFLESE 69
Query: 116 DPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFA 175
+P KDI +++NSPGG+++A +AIYD +Q ++ DVSTV +G +AS +L+L GGTKGKR+A
Sbjct: 70 NPDKDIHIYINSPGGAVTAGLAIYDTMQFIKPDVSTVCIGQAASMGALLLTGGTKGKRYA 129
Query: 176 MPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRY 235
+PN+R+MIHQP+GG GQ DV+I AREI+ +D RI++ TG+ E + +D DRD +
Sbjct: 130 LPNSRMMIHQPLGGFQGQATDVDIHAREILDMRDRLNRIMAHHTGQDMETIARDTDRDNF 189
Query: 236 MSPIEAVEYGIIDGVI-DRDSI 256
MSP A EYG++D V+ DR ++
Sbjct: 190 MSPDTACEYGLVDAVLADRKAL 211
>sp|A0LDT4|CLPP_MAGSM ATP-dependent Clp protease proteolytic subunit OS=Magnetococcus sp.
(strain MC-1) GN=clpP PE=3 SV=1
Length = 202
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 92/195 (47%), Positives = 133/195 (68%), Gaps = 1/195 (0%)
Query: 63 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDI 121
+S P T RG A D LLKER+VFL +++ +A+ +++QLL L++++P KDI
Sbjct: 1 MSLVPMVVETTNRGERAYDIYSRLLKERVVFLVGQVEEHMANLVVAQLLFLESENPEKDI 60
Query: 122 RLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRV 181
L++NSPGGS++A MAIYD +Q +R VST+ +G +AS +++L G GKR +PN RV
Sbjct: 61 HLYINSPGGSVTAGMAIYDTMQFIRPSVSTLCIGQAASMGAVLLAAGEAGKRLVLPNARV 120
Query: 182 MIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEA 241
MIHQP+GG SGQ D EI AREI+ ++N +++S TG+ EQVQ D +RD ++S EA
Sbjct: 121 MIHQPLGGFSGQASDFEIHAREILRIRENLNQVLSHHTGKPLEQVQLDTERDNFLSATEA 180
Query: 242 VEYGIIDGVIDRDSI 256
VEYG++D VI +
Sbjct: 181 VEYGLVDKVISHREL 195
>sp|Q7MX09|CLPP_PORGI ATP-dependent Clp protease proteolytic subunit OS=Porphyromonas
gingivalis (strain ATCC BAA-308 / W83) GN=clpP PE=3 SV=1
Length = 222
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 129/178 (72%)
Query: 77 AEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATM 136
A+ D L+ +RI+FLG IDD+ A+ I +QLL LD+ DP KDI +++NSPGGS+ A
Sbjct: 43 AQMDVFSRLMMDRIIFLGTQIDDYTANVIQAQLLYLDSADPGKDISIYLNSPGGSVYAGY 102
Query: 137 AIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLD 196
IYD +Q + DV+T+ GM+AS AS++L GTKGKRFA+P++RVMIHQP+GG GQ D
Sbjct: 103 GIYDTMQYIGCDVATICTGMAASMASVLLVAGTKGKRFALPHSRVMIHQPLGGMQGQASD 162
Query: 197 VEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRD 254
+EI AREI+ K IIS +G+ EQV+KD DRD +M+ EA+EYG+ID +++++
Sbjct: 163 LEIAAREILRVKKELYTIISSHSGKPVEQVEKDSDRDYWMTAPEALEYGMIDKILEKN 220
>sp|B7GL34|CLPP_ANOFW ATP-dependent Clp protease proteolytic subunit OS=Anoxybacillus
flavithermus (strain DSM 21510 / WK1) GN=clpP PE=3 SV=1
Length = 196
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 131/180 (72%), Gaps = 1/180 (0%)
Query: 75 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLS 133
RG A D LLK+RI+ LG+ IDD VA++I+SQLL L A+DP KDI L++NSPGGS++
Sbjct: 13 RGERAYDIYSRLLKDRIIILGSPIDDHVANSIVSQLLFLAAEDPEKDISLYINSPGGSIT 72
Query: 134 ATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQPMGGASGQ 193
A MAIYD +Q ++ DVST+ +GM+AS + +L G KGKRFA+PN+ +MIHQP+GG GQ
Sbjct: 73 AGMAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGVQGQ 132
Query: 194 VLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 253
++EI A+ I+ +D RI+S TG+ E +++D DRD +M+ +A EYG+ID V+ R
Sbjct: 133 ATEIEIAAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAEKAKEYGLIDRVLTR 192
>sp|Q2JIP1|CLPP2_SYNJB ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain JA-2-3B'a(2-13)) GN=clpP2 PE=3 SV=1
Length = 200
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 90/188 (47%), Positives = 137/188 (72%), Gaps = 1/188 (0%)
Query: 67 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 125
P + RG A D LL++RI+FLG +DD +A+ I++Q+L L+++DP KDI L++
Sbjct: 3 PTVIEQSARGERAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYI 62
Query: 126 NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 185
NSPGGS+ A MAIYD +Q ++ DVST+ +G++AS + +L GGTKGKR A+P+ R+MIHQ
Sbjct: 63 NSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQ 122
Query: 186 PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 245
P+GGA G D+EIQA+EI+ K++ +++ TG+ E++++D DRD +M+P +A EYG
Sbjct: 123 PLGGAQGPATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYG 182
Query: 246 IIDGVIDR 253
+ID VI +
Sbjct: 183 LIDQVISK 190
>sp|Q472D3|CLPP_CUPPJ ATP-dependent Clp protease proteolytic subunit OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=clpP PE=3
SV=1
Length = 216
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 144/214 (67%), Gaps = 7/214 (3%)
Query: 43 RRISTKTLALQQQQRQHDVPLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFV 101
R +T+ AL+ Q L P + RG A D LLKER+VFL ++D
Sbjct: 9 RLATTQASALETQ------GLGLVPMVVEQSGRGERAYDIYSRLLKERVVFLVGEVNDQT 62
Query: 102 ADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTA 161
A+ +++QLL L++++P KDI L++NSPGGS+SA +AIYD +Q V+ DV T+ +GM+AS
Sbjct: 63 ANLVVAQLLFLESENPDKDISLYINSPGGSVSAGLAIYDTMQFVKPDVQTLCMGMAASMG 122
Query: 162 SLILGGGTKGKRFAMPNTRVMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGR 221
+ +L G KGKR A+PN+R+MIHQP+GGA GQ D+EIQAREI++ ++ I+S TG+
Sbjct: 123 AFLLAAGAKGKRSALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNSILSEVTGQ 182
Query: 222 SFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 255
E++ +D DRD +MS +AV+YG+ID VI R S
Sbjct: 183 PVEKIARDTDRDNFMSGDQAVDYGLIDKVIARRS 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,941,897
Number of Sequences: 539616
Number of extensions: 4422752
Number of successful extensions: 13289
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 12310
Number of HSP's gapped (non-prelim): 774
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)